Query 015301
Match_columns 409
No_of_seqs 828 out of 1441
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 10:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 3.5E-53 1.2E-57 368.4 39.0 290 33-385 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 6.3E-53 2.2E-57 354.3 38.4 290 35-385 27-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 5.7E-52 1.9E-56 352.2 41.5 293 33-383 48-340 (340)
4 2pbi_B Guanine nucleotide-bind 100.0 1.5E-51 5E-56 351.1 41.8 298 32-383 56-354 (354)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-51 1.1E-55 348.1 38.3 316 34-390 9-339 (345)
6 3iz6_a 40S ribosomal protein R 100.0 3.7E-52 1.3E-56 358.7 32.3 307 34-388 60-377 (380)
7 4g56_B MGC81050 protein; prote 100.0 1.1E-51 3.8E-56 352.0 34.4 298 35-389 37-346 (357)
8 2ynn_A Coatomer subunit beta'; 100.0 4.6E-50 1.6E-54 335.0 39.0 293 31-386 4-302 (304)
9 4gqb_B Methylosome protein 50; 100.0 5.8E-51 2E-55 344.6 33.8 294 37-388 27-333 (344)
10 1nr0_A Actin interacting prote 100.0 6.1E-50 2.1E-54 365.6 41.3 360 4-388 106-569 (611)
11 1nr0_A Actin interacting prote 100.0 1.2E-49 4E-54 363.8 41.4 324 4-389 21-358 (611)
12 2ymu_A WD-40 repeat protein; u 100.0 2.7E-49 9.2E-54 360.8 43.3 327 4-383 224-577 (577)
13 4ery_A WD repeat-containing pr 100.0 1.4E-48 4.8E-53 328.0 40.8 292 34-385 17-311 (312)
14 3frx_A Guanine nucleotide-bind 100.0 1.2E-48 4E-53 328.6 39.7 291 34-386 11-317 (319)
15 1erj_A Transcriptional repress 100.0 2.5E-48 8.5E-53 336.4 38.8 301 37-386 61-389 (393)
16 2hes_X YDR267CP; beta-propelle 100.0 3E-48 1E-52 327.8 38.1 307 34-386 8-328 (330)
17 1gxr_A ESG1, transducin-like e 100.0 4.1E-48 1.4E-52 329.2 37.9 319 4-384 12-335 (337)
18 2xzm_R RACK1; ribosome, transl 100.0 7.5E-48 2.6E-52 327.4 38.8 292 33-387 14-341 (343)
19 2ymu_A WD-40 repeat protein; u 100.0 2.8E-47 9.7E-52 347.5 45.1 329 4-386 19-416 (577)
20 2pm9_A Protein WEB1, protein t 100.0 6.1E-48 2.1E-52 337.8 28.7 336 3-387 14-415 (416)
21 4aow_A Guanine nucleotide-bind 100.0 6.5E-46 2.2E-50 316.0 40.4 293 35-388 33-339 (340)
22 1r5m_A SIR4-interacting protei 100.0 2.4E-46 8.2E-51 328.6 37.8 332 3-385 47-424 (425)
23 4e54_B DNA damage-binding prot 100.0 2.4E-47 8.2E-52 334.9 30.0 304 35-389 114-433 (435)
24 1vyh_C Platelet-activating fac 100.0 4.4E-46 1.5E-50 323.8 36.1 278 4-343 111-410 (410)
25 3ei3_B DNA damage-binding prot 100.0 1E-45 3.5E-50 319.8 38.1 308 35-386 68-382 (383)
26 3ow8_A WD repeat-containing pr 100.0 1.5E-45 5.3E-50 309.4 35.1 277 4-343 35-320 (321)
27 3zwl_B Eukaryotic translation 100.0 7.6E-45 2.6E-49 313.0 39.8 291 34-388 26-348 (369)
28 3gre_A Serine/threonine-protei 100.0 7.1E-47 2.4E-51 332.9 27.3 346 8-383 34-437 (437)
29 4gqb_B Methylosome protein 50; 100.0 3.5E-45 1.2E-49 309.3 35.9 282 4-346 33-333 (344)
30 3dm0_A Maltose-binding peripla 100.0 8.8E-45 3E-49 337.0 39.0 290 35-386 377-693 (694)
31 3odt_A Protein DOA1; ubiquitin 100.0 2.7E-44 9.2E-49 302.4 36.7 289 33-390 11-300 (313)
32 1k8k_C P40, ARP2/3 complex 41 100.0 4.4E-45 1.5E-49 314.9 32.2 299 35-389 3-364 (372)
33 1sq9_A Antiviral protein SKI8; 100.0 6.2E-45 2.1E-49 316.7 33.4 293 34-387 10-396 (397)
34 2ynn_A Coatomer subunit beta'; 100.0 2E-44 6.7E-49 300.9 34.4 250 81-389 9-262 (304)
35 4g56_B MGC81050 protein; prote 100.0 5.5E-45 1.9E-49 310.7 31.4 284 3-347 44-346 (357)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.1E-44 1.1E-48 305.1 35.2 303 4-351 19-342 (345)
37 1got_B GT-beta; complex (GTP-b 100.0 2.2E-44 7.4E-49 305.6 33.7 277 4-341 58-340 (340)
38 3k26_A Polycomb protein EED; W 100.0 7.6E-45 2.6E-49 312.6 31.4 303 35-385 13-365 (366)
39 1pgu_A Actin interacting prote 100.0 1.4E-43 4.7E-48 325.8 41.0 362 4-388 21-574 (615)
40 3vl1_A 26S proteasome regulato 100.0 3.7E-44 1.3E-48 314.1 34.7 319 5-386 60-419 (420)
41 1erj_A Transcriptional repress 100.0 7.7E-44 2.6E-48 308.2 35.8 288 4-345 67-390 (393)
42 3i2n_A WD repeat-containing pr 100.0 4.6E-44 1.6E-48 306.7 33.6 296 35-388 13-355 (357)
43 4a11_B DNA excision repair pro 100.0 1.8E-43 6E-48 308.7 37.2 314 26-391 29-370 (408)
44 4h5i_A Guanine nucleotide-exch 100.0 2.3E-44 8E-49 307.6 29.8 299 40-389 14-346 (365)
45 2oaj_A Protein SNI1; WD40 repe 100.0 2E-43 6.9E-48 333.6 38.7 351 3-388 19-607 (902)
46 3sfz_A APAF-1, apoptotic pepti 100.0 5.6E-44 1.9E-48 352.8 36.0 372 4-390 660-1162(1249)
47 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-44 7.2E-49 319.0 29.2 294 35-387 202-518 (524)
48 4gga_A P55CDC, cell division c 100.0 1.2E-42 4.1E-47 303.7 38.9 286 42-389 107-398 (420)
49 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-43 2.2E-47 345.2 40.7 359 4-390 618-1038(1249)
50 2pbi_B Guanine nucleotide-bind 100.0 3E-43 1E-47 299.8 33.1 278 4-341 67-354 (354)
51 2pm9_A Protein WEB1, protein t 100.0 3.4E-44 1.1E-48 314.1 27.9 297 40-391 12-342 (416)
52 3dwl_C Actin-related protein 2 100.0 1.4E-44 4.6E-49 312.2 24.9 298 34-384 5-377 (377)
53 1r5m_A SIR4-interacting protei 100.0 6.9E-43 2.4E-47 306.6 35.4 291 35-388 40-363 (425)
54 1pgu_A Actin interacting prote 100.0 2.1E-42 7.1E-47 317.9 39.0 326 4-386 119-614 (615)
55 4ggc_A P55CDC, cell division c 100.0 9.2E-42 3.1E-46 287.6 38.6 300 26-387 7-316 (318)
56 4aez_A CDC20, WD repeat-contai 100.0 3.1E-42 1E-46 299.4 35.6 287 38-391 89-385 (401)
57 3frx_A Guanine nucleotide-bind 100.0 8.1E-42 2.8E-46 287.0 35.7 282 4-345 20-318 (319)
58 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-42 9.1E-47 326.0 35.2 372 4-384 101-659 (902)
59 3iz6_a 40S ribosomal protein R 100.0 2.1E-43 7.1E-48 304.1 25.3 288 4-346 69-377 (380)
60 1gxr_A ESG1, transducin-like e 100.0 5.2E-42 1.8E-46 291.5 33.5 291 39-390 8-300 (337)
61 1yfq_A Cell cycle arrest prote 100.0 4.6E-42 1.6E-46 292.5 30.3 299 36-384 7-322 (342)
62 3vl1_A 26S proteasome regulato 100.0 2E-42 7E-47 303.1 28.9 284 41-389 57-368 (420)
63 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-41 7.6E-46 320.9 37.8 294 32-387 5-303 (814)
64 2pm7_B Protein transport prote 100.0 1.3E-41 4.5E-46 282.9 31.5 259 34-343 3-284 (297)
65 3dw8_B Serine/threonine-protei 100.0 1.3E-41 4.4E-46 300.5 33.4 310 37-384 25-444 (447)
66 2xzm_R RACK1; ribosome, transl 100.0 4.5E-41 1.5E-45 285.7 35.3 293 4-346 24-342 (343)
67 3f3f_A Nucleoporin SEH1; struc 100.0 1.6E-41 5.5E-46 290.0 31.6 313 33-389 4-340 (351)
68 2hes_X YDR267CP; beta-propelle 100.0 4.6E-41 1.6E-45 283.8 33.4 288 4-344 17-328 (330)
69 2pm7_B Protein transport prote 100.0 7.9E-41 2.7E-45 278.2 33.6 254 81-386 5-285 (297)
70 3mmy_A MRNA export factor; mRN 100.0 5E-41 1.7E-45 289.1 33.4 304 29-387 28-347 (368)
71 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.3E-40 1.5E-44 290.2 39.4 308 8-387 124-443 (445)
72 4ery_A WD repeat-containing pr 100.0 3.6E-40 1.2E-44 276.8 37.1 277 4-343 26-311 (312)
73 3v7d_B Cell division control p 100.0 3.4E-40 1.2E-44 292.6 37.5 285 34-390 115-425 (464)
74 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-40 8E-45 290.7 34.9 277 37-390 130-418 (435)
75 3mkq_A Coatomer beta'-subunit; 100.0 2.6E-40 8.8E-45 313.6 37.0 321 3-386 15-386 (814)
76 3v7d_B Cell division control p 100.0 1.6E-39 5.3E-44 288.4 38.9 319 10-384 129-461 (464)
77 3bg1_A Protein SEC13 homolog; 100.0 2.5E-41 8.4E-46 283.7 25.5 259 34-343 7-292 (316)
78 3jrp_A Fusion protein of prote 100.0 2.3E-39 7.9E-44 279.8 35.8 264 33-345 4-288 (379)
79 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-39 1.8E-43 283.2 38.0 281 32-389 110-394 (445)
80 3zwl_B Eukaryotic translation 100.0 6E-39 2E-43 276.2 36.1 297 3-351 34-353 (369)
81 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-39 5.5E-44 280.1 32.6 241 4-262 11-274 (372)
82 3bg1_A Protein SEC13 homolog; 100.0 1.9E-40 6.3E-45 278.3 24.5 255 81-386 9-293 (316)
83 3dm0_A Maltose-binding peripla 100.0 7.8E-39 2.7E-43 297.2 36.4 297 4-343 385-692 (694)
84 2aq5_A Coronin-1A; WD40 repeat 100.0 1.8E-39 6.1E-44 282.3 29.8 297 40-390 34-346 (402)
85 4h5i_A Guanine nucleotide-exch 100.0 9.6E-40 3.3E-44 279.1 27.6 282 4-345 17-344 (365)
86 4aow_A Guanine nucleotide-bind 100.0 2.8E-38 9.5E-43 268.9 36.5 288 4-346 41-339 (340)
87 1sq9_A Antiviral protein SKI8; 100.0 7.6E-39 2.6E-43 278.3 32.4 314 3-346 18-397 (397)
88 3dwl_C Actin-related protein 2 100.0 5.5E-40 1.9E-44 283.4 24.7 240 4-261 14-280 (377)
89 2j04_B YDR362CP, TAU91; beta p 100.0 9.6E-40 3.3E-44 289.2 24.5 271 37-387 130-429 (524)
90 2j04_A TAU60, YPL007P, hypothe 100.0 2E-39 6.8E-44 279.9 25.4 291 4-374 18-349 (588)
91 3ei3_B DNA damage-binding prot 100.0 2.3E-38 7.9E-43 273.7 32.2 277 4-344 76-382 (383)
92 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.2E-38 2.1E-42 276.5 34.0 310 40-387 4-392 (450)
93 3i2n_A WD repeat-containing pr 100.0 4.7E-38 1.6E-42 269.4 31.1 304 3-347 20-356 (357)
94 3gre_A Serine/threonine-protei 100.0 5.3E-39 1.8E-43 282.8 25.7 283 47-390 34-363 (437)
95 4gga_A P55CDC, cell division c 100.0 4.3E-37 1.5E-41 268.6 36.5 294 5-362 109-413 (420)
96 3k26_A Polycomb protein EED; W 100.0 2E-38 6.8E-43 272.6 27.4 289 3-343 20-365 (366)
97 4aez_A CDC20, WD repeat-contai 100.0 4.3E-37 1.5E-41 267.0 34.8 285 5-351 97-387 (401)
98 3jrp_A Fusion protein of prote 100.0 9.4E-38 3.2E-42 269.7 30.2 254 81-386 7-287 (379)
99 3jro_A Fusion protein of prote 100.0 2.4E-38 8.3E-43 295.2 28.1 262 34-344 3-285 (753)
100 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-38 6E-43 274.1 24.5 265 38-385 13-296 (588)
101 3vu4_A KMHSV2; beta-propeller 100.0 2.9E-37 9.8E-42 263.1 31.6 286 34-390 13-340 (355)
102 2xyi_A Probable histone-bindin 100.0 1.9E-37 6.5E-42 271.5 31.2 263 80-387 123-411 (430)
103 4e54_B DNA damage-binding prot 100.0 5.5E-38 1.9E-42 275.5 27.6 282 4-348 122-434 (435)
104 3odt_A Protein DOA1; ubiquitin 100.0 5.3E-37 1.8E-41 257.9 32.3 280 3-352 20-304 (313)
105 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-37 4E-42 264.8 25.8 283 46-386 42-333 (343)
106 4a11_B DNA excision repair pro 100.0 3E-36 1E-40 263.0 35.2 317 3-386 45-405 (408)
107 3dw8_B Serine/threonine-protei 100.0 7.8E-37 2.7E-41 269.9 30.4 249 3-265 30-376 (447)
108 4gq1_A NUP37; propeller, trans 100.0 9.9E-38 3.4E-42 269.7 23.4 265 90-385 94-388 (393)
109 4ggc_A P55CDC, cell division c 100.0 1.2E-34 4.1E-39 244.1 36.3 278 5-346 29-317 (318)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 6.4E-36 2.2E-40 260.0 28.9 289 4-347 37-345 (402)
111 3jro_A Fusion protein of prote 100.0 2.1E-36 7.1E-41 282.2 27.5 256 81-388 5-287 (753)
112 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-35 6E-40 259.8 31.2 294 7-364 137-433 (435)
113 1yfq_A Cell cycle arrest prote 100.0 1.2E-35 4.2E-40 252.8 28.9 253 81-389 7-285 (342)
114 2w18_A PALB2, fancn, partner a 100.0 1.6E-34 5.5E-39 234.3 32.6 280 43-384 42-355 (356)
115 3f3f_A Nucleoporin SEH1; struc 100.0 5.6E-35 1.9E-39 249.5 30.6 302 3-351 13-344 (351)
116 2xyi_A Probable histone-bindin 100.0 4.5E-35 1.5E-39 256.4 28.4 274 35-345 123-411 (430)
117 3bws_A Protein LP49; two-domai 100.0 7.9E-34 2.7E-38 249.6 35.2 283 40-386 122-432 (433)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-33 5.4E-38 248.4 34.1 204 38-260 100-337 (450)
119 1l0q_A Surface layer protein; 100.0 9.6E-33 3.3E-37 239.3 38.2 268 53-389 3-278 (391)
120 3mmy_A MRNA export factor; mRN 100.0 2.3E-33 7.8E-38 241.2 30.1 275 3-342 41-344 (368)
121 3vu4_A KMHSV2; beta-propeller 100.0 6.5E-33 2.2E-37 236.2 32.3 295 3-346 21-338 (355)
122 1l0q_A Surface layer protein; 100.0 1E-31 3.4E-36 232.9 37.9 286 35-389 27-345 (391)
123 4gq1_A NUP37; propeller, trans 100.0 3.4E-33 1.2E-37 241.3 24.4 243 41-343 90-388 (393)
124 3lrv_A PRE-mRNA-splicing facto 100.0 4.4E-33 1.5E-37 236.6 23.1 232 92-389 43-295 (343)
125 3bws_A Protein LP49; two-domai 100.0 4.3E-31 1.5E-35 232.1 29.6 291 39-389 59-393 (433)
126 1nir_A Nitrite reductase; hemo 100.0 3.9E-29 1.3E-33 223.3 36.3 334 6-390 142-518 (543)
127 1nir_A Nitrite reductase; hemo 100.0 1.5E-29 5.2E-34 226.0 33.0 283 47-390 144-462 (543)
128 2w18_A PALB2, fancn, partner a 100.0 4.6E-30 1.6E-34 208.3 26.5 258 21-342 64-355 (356)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.4E-30 1.2E-34 223.7 26.4 288 39-393 61-394 (415)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.6E-30 1.2E-34 223.5 25.1 264 35-368 112-410 (415)
131 2ecf_A Dipeptidyl peptidase IV 100.0 7E-29 2.4E-33 232.7 30.7 285 40-386 36-413 (741)
132 2ecf_A Dipeptidyl peptidase IV 100.0 4.7E-29 1.6E-33 233.8 29.4 328 4-386 39-459 (741)
133 1k32_A Tricorn protease; prote 100.0 3E-28 1E-32 235.7 35.1 363 4-388 17-463 (1045)
134 1k32_A Tricorn protease; prote 100.0 2.2E-28 7.7E-33 236.6 31.7 330 4-385 55-501 (1045)
135 1xfd_A DIP, dipeptidyl aminope 100.0 3.6E-28 1.2E-32 227.4 29.1 324 4-373 19-427 (723)
136 1ri6_A Putative isomerase YBHE 100.0 1.3E-27 4.5E-32 203.3 28.6 281 54-385 7-307 (343)
137 2z3z_A Dipeptidyl aminopeptida 100.0 2.6E-27 8.8E-32 220.8 31.8 326 6-388 30-437 (706)
138 2ojh_A Uncharacterized protein 100.0 2E-27 7E-32 197.7 26.1 257 57-377 17-293 (297)
139 3u4y_A Uncharacterized protein 100.0 4.9E-26 1.7E-30 192.5 34.8 280 47-388 4-306 (331)
140 3vgz_A Uncharacterized protein 100.0 4.5E-26 1.5E-30 194.6 34.2 282 38-377 38-335 (353)
141 1xfd_A DIP, dipeptidyl aminope 100.0 2.9E-28 1E-32 227.9 22.2 292 41-387 17-394 (723)
142 2z3z_A Dipeptidyl aminopeptida 100.0 8.4E-26 2.9E-30 210.7 30.6 319 3-384 83-474 (706)
143 3hfq_A Uncharacterized protein 100.0 2.8E-25 9.5E-30 189.1 30.7 276 61-385 15-316 (347)
144 1pby_B Quinohemoprotein amine 100.0 1.3E-25 4.4E-30 190.4 27.7 275 53-389 2-313 (337)
145 1ri6_A Putative isomerase YBHE 100.0 6.4E-25 2.2E-29 186.7 32.0 278 37-368 34-335 (343)
146 3o4h_A Acylamino-acid-releasin 100.0 4.5E-26 1.6E-30 207.4 25.5 277 40-386 21-315 (582)
147 1z68_A Fibroblast activation p 99.9 2.5E-25 8.4E-30 207.9 24.5 327 4-388 18-445 (719)
148 3u4y_A Uncharacterized protein 99.9 1.7E-23 5.8E-28 176.9 31.7 255 35-346 35-306 (331)
149 1jmx_B Amine dehydrogenase; ox 99.9 6.7E-24 2.3E-28 180.8 28.5 283 45-389 4-328 (349)
150 2ojh_A Uncharacterized protein 99.9 5E-24 1.7E-28 177.2 25.7 206 33-262 34-258 (297)
151 3pe7_A Oligogalacturonate lyas 99.9 7.6E-24 2.6E-28 183.2 27.5 292 33-385 23-381 (388)
152 3scy_A Hypothetical bacterial 99.9 4.7E-23 1.6E-27 176.3 31.4 278 51-385 12-336 (361)
153 1z68_A Fibroblast activation p 99.9 1E-24 3.5E-29 203.7 22.3 285 45-386 20-391 (719)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 5E-23 1.7E-27 179.2 31.0 196 4-216 39-278 (434)
155 3hfq_A Uncharacterized protein 99.9 3.9E-23 1.3E-27 175.9 27.9 266 37-348 36-323 (347)
156 3vgz_A Uncharacterized protein 99.9 5.7E-23 2E-27 175.3 28.8 244 87-389 42-306 (353)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 3.4E-23 1.2E-27 180.2 27.4 214 39-263 35-279 (434)
158 3scy_A Hypothetical bacterial 99.9 1.5E-21 5E-26 167.0 36.2 281 39-364 48-360 (361)
159 1pby_B Quinohemoprotein amine 99.9 9.5E-23 3.3E-27 172.8 26.9 248 42-356 35-322 (337)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.8E-22 1.3E-26 170.6 28.5 288 54-387 4-342 (365)
161 3o4h_A Acylamino-acid-releasin 99.9 7.2E-23 2.5E-27 186.4 22.5 232 85-384 21-274 (582)
162 4a5s_A Dipeptidyl peptidase 4 99.9 6.9E-21 2.4E-25 177.9 34.1 332 4-388 19-451 (740)
163 1jmx_B Amine dehydrogenase; ox 99.9 5.5E-21 1.9E-25 162.8 29.0 277 5-354 3-335 (349)
164 4a5s_A Dipeptidyl peptidase 4 99.9 9.4E-22 3.2E-26 183.7 25.5 289 40-392 16-359 (740)
165 3azo_A Aminopeptidase; POP fam 99.9 2.5E-20 8.5E-25 172.5 32.7 322 4-385 26-410 (662)
166 3c5m_A Oligogalacturonate lyas 99.9 8.2E-22 2.8E-26 170.9 21.1 294 42-388 37-386 (396)
167 2oiz_A Aromatic amine dehydrog 99.9 2.7E-20 9.1E-25 158.3 27.1 283 50-387 13-335 (361)
168 2oiz_A Aromatic amine dehydrog 99.9 5.3E-20 1.8E-24 156.4 27.5 268 35-368 46-360 (361)
169 3azo_A Aminopeptidase; POP fam 99.9 3.5E-20 1.2E-24 171.6 27.4 300 34-388 17-371 (662)
170 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.1E-20 2.4E-24 156.5 26.2 251 39-345 38-342 (365)
171 3pe7_A Oligogalacturonate lyas 99.9 2E-20 7E-25 161.6 21.2 231 7-262 41-329 (388)
172 2gop_A Trilobed protease; beta 99.9 8.2E-19 2.8E-23 149.2 30.5 258 41-385 15-330 (347)
173 2dg1_A DRP35, lactonase; beta 99.9 6.2E-19 2.1E-23 149.0 28.7 284 41-385 6-315 (333)
174 1q7f_A NHL, brain tumor CG1071 99.9 4.8E-18 1.6E-22 140.2 32.2 244 85-386 29-280 (286)
175 3fvz_A Peptidyl-glycine alpha- 99.9 6.6E-19 2.3E-23 148.1 26.7 245 86-387 24-323 (329)
176 1q7f_A NHL, brain tumor CG1071 99.9 4E-18 1.4E-22 140.7 30.5 247 37-346 26-282 (286)
177 2xdw_A Prolyl endopeptidase; a 99.8 8.2E-18 2.8E-22 156.5 33.2 284 50-388 81-416 (710)
178 3c5m_A Oligogalacturonate lyas 99.8 2.5E-19 8.6E-24 155.2 19.4 232 4-263 38-330 (396)
179 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-17 3.6E-22 140.8 27.9 256 39-344 22-322 (329)
180 1qks_A Cytochrome CD1 nitrite 99.8 1.4E-16 4.7E-21 142.1 35.7 278 50-387 165-478 (567)
181 2bkl_A Prolyl endopeptidase; m 99.8 9.1E-18 3.1E-22 155.7 28.0 280 49-388 76-399 (695)
182 2xdw_A Prolyl endopeptidase; a 99.8 2.1E-17 7.3E-22 153.7 29.2 248 38-346 122-416 (710)
183 2z2n_A Virginiamycin B lyase; 99.8 1.5E-15 5E-20 126.1 37.0 283 37-387 11-296 (299)
184 2dg1_A DRP35, lactonase; beta 99.8 4.4E-17 1.5E-21 137.6 27.7 233 4-261 8-262 (333)
185 2bkl_A Prolyl endopeptidase; m 99.8 2.7E-17 9.3E-22 152.5 28.1 250 38-347 118-400 (695)
186 2gop_A Trilobed protease; beta 99.8 2.2E-16 7.7E-21 134.1 28.5 182 41-262 59-291 (347)
187 3e5z_A Putative gluconolactona 99.8 2.5E-16 8.7E-21 130.5 27.4 247 34-347 21-289 (296)
188 1rwi_B Serine/threonine-protei 99.8 2E-16 6.8E-21 129.3 25.7 242 87-389 25-267 (270)
189 2mad_H Methylamine dehydrogena 99.8 5.5E-15 1.9E-19 125.5 34.4 288 47-390 27-354 (373)
190 1qks_A Cytochrome CD1 nitrite 99.8 2E-14 6.9E-19 128.2 39.2 302 40-390 196-542 (567)
191 2qc5_A Streptogramin B lactona 99.8 2.4E-14 8.1E-19 118.9 36.2 279 39-385 18-299 (300)
192 1rwi_B Serine/threonine-protei 99.8 4.6E-16 1.6E-20 127.2 25.4 242 42-347 25-267 (270)
193 3e5z_A Putative gluconolactona 99.8 8.4E-16 2.9E-20 127.4 26.3 232 4-262 30-286 (296)
194 3sjl_D Methylamine dehydrogena 99.8 2.5E-15 8.6E-20 125.7 28.9 293 46-389 38-366 (386)
195 1yr2_A Prolyl oligopeptidase; 99.8 8.6E-16 2.9E-20 143.5 29.0 279 49-389 115-444 (741)
196 3dsm_A Uncharacterized protein 99.7 1.4E-15 4.6E-20 127.7 25.8 260 60-385 15-301 (328)
197 3no2_A Uncharacterized protein 99.7 2.8E-15 9.6E-20 122.0 26.8 186 51-263 4-196 (276)
198 3no2_A Uncharacterized protein 99.7 2.3E-15 7.9E-20 122.5 26.2 213 96-373 4-230 (276)
199 1yr2_A Prolyl oligopeptidase; 99.7 1.7E-15 5.7E-20 141.6 27.6 202 39-261 161-392 (741)
200 2z2n_A Virginiamycin B lyase; 99.7 1.1E-13 3.7E-18 114.8 34.5 234 3-261 16-254 (299)
201 3dsm_A Uncharacterized protein 99.7 3.6E-14 1.2E-18 119.0 30.5 258 41-363 44-319 (328)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 2E-14 6.8E-19 120.2 28.7 248 87-387 19-300 (314)
203 3c75_H MADH, methylamine dehyd 99.7 1.3E-14 4.3E-19 123.8 27.4 290 50-390 82-406 (426)
204 3sjl_D Methylamine dehydrogena 99.7 8E-14 2.7E-18 116.7 29.0 259 45-366 82-384 (386)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 3.3E-13 1.1E-17 112.8 30.2 251 36-344 13-299 (314)
206 2mad_H Methylamine dehydrogena 99.7 2E-12 6.9E-17 109.8 34.2 242 45-351 70-357 (373)
207 3hrp_A Uncharacterized protein 99.7 1.8E-13 6.2E-18 118.0 27.9 254 41-342 131-408 (409)
208 3g4e_A Regucalcin; six bladed 99.7 5.3E-13 1.8E-17 110.3 28.9 228 87-373 14-259 (297)
209 3hrp_A Uncharacterized protein 99.6 2.4E-13 8.1E-18 117.2 27.1 249 87-385 132-409 (409)
210 2qc5_A Streptogramin B lactona 99.6 7.2E-12 2.4E-16 103.8 33.8 234 3-261 21-259 (300)
211 3iuj_A Prolyl endopeptidase; h 99.6 1.5E-13 5.2E-18 127.2 24.6 204 38-262 126-359 (693)
212 2qe8_A Uncharacterized protein 99.6 3.1E-13 1E-17 114.2 22.7 284 41-383 17-318 (343)
213 1xip_A Nucleoporin NUP159; bet 99.6 6.2E-14 2.1E-18 117.9 17.2 175 42-250 39-232 (388)
214 1xip_A Nucleoporin NUP159; bet 99.6 2.8E-13 9.7E-18 113.9 19.0 169 4-203 40-231 (388)
215 3dr2_A Exported gluconolactona 99.6 3.4E-12 1.2E-16 105.9 25.1 227 4-259 47-303 (305)
216 3g4e_A Regucalcin; six bladed 99.6 3.1E-11 1E-15 99.8 30.5 224 4-251 15-261 (297)
217 1mda_H Methylamine dehydrogena 99.6 1E-12 3.4E-17 110.4 21.5 270 63-390 47-350 (368)
218 3c75_H MADH, methylamine dehyd 99.5 6.3E-12 2.2E-16 107.3 25.5 244 45-351 122-409 (426)
219 2ghs_A AGR_C_1268P; regucalcin 99.5 2.9E-11 1E-15 101.2 29.0 225 88-373 51-289 (326)
220 3dr2_A Exported gluconolactona 99.5 1.2E-11 4E-16 102.7 26.2 208 31-262 35-267 (305)
221 3iuj_A Prolyl endopeptidase; h 99.5 2.3E-12 7.8E-17 119.4 23.3 242 84-388 127-407 (693)
222 2ghs_A AGR_C_1268P; regucalcin 99.5 1.2E-10 4.3E-15 97.4 30.1 222 4-252 51-292 (326)
223 2qe8_A Uncharacterized protein 99.5 9.5E-12 3.2E-16 105.0 19.4 234 86-386 17-278 (343)
224 1kb0_A Quinohemoprotein alcoho 99.4 3.9E-11 1.3E-15 110.2 23.3 309 52-390 77-511 (677)
225 1yiq_A Quinohemoprotein alcoho 99.4 5E-11 1.7E-15 109.7 23.2 311 52-390 70-509 (689)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.4 6.7E-10 2.3E-14 95.2 28.9 267 51-389 52-340 (376)
227 1yiq_A Quinohemoprotein alcoho 99.4 2.2E-10 7.5E-15 105.4 27.3 323 51-388 120-571 (689)
228 2ece_A 462AA long hypothetical 99.4 2.7E-09 9.3E-14 90.1 30.3 245 95-374 93-399 (462)
229 1kb0_A Quinohemoprotein alcoho 99.4 8.8E-10 3E-14 101.3 30.0 322 51-386 127-567 (677)
230 1fwx_A Nitrous oxide reductase 99.4 2.9E-10 9.9E-15 99.4 24.4 245 96-388 100-433 (595)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.6E-08 5.3E-13 86.6 34.9 263 51-383 102-375 (376)
232 2hz6_A Endoplasmic reticulum t 99.4 6.1E-13 2.1E-17 113.2 6.9 202 96-367 8-215 (369)
233 2ece_A 462AA long hypothetical 99.4 7E-10 2.4E-14 93.6 24.0 200 47-262 88-352 (462)
234 1mda_H Methylamine dehydrogena 99.4 8.3E-11 2.8E-15 98.8 18.6 249 45-365 69-366 (368)
235 2hz6_A Endoplasmic reticulum t 99.3 4.9E-13 1.7E-17 113.8 5.1 184 153-390 8-196 (369)
236 3hxj_A Pyrrolo-quinoline quino 99.3 1.1E-10 3.6E-15 98.3 19.3 267 41-388 60-326 (330)
237 1npe_A Nidogen, entactin; glyc 99.3 8.9E-08 3E-12 77.6 31.4 251 53-368 2-263 (267)
238 3hxj_A Pyrrolo-quinoline quino 99.2 2.3E-09 7.8E-14 90.0 21.4 259 45-384 24-282 (330)
239 2iwa_A Glutamine cyclotransfer 99.2 1.4E-08 4.9E-13 80.5 23.8 200 145-388 23-239 (266)
240 4a2l_A BT_4663, two-component 99.2 6.7E-07 2.3E-11 84.5 38.7 326 4-387 175-527 (795)
241 4a2l_A BT_4663, two-component 99.2 1.3E-06 4.6E-11 82.4 39.5 285 40-387 262-572 (795)
242 1kv9_A Type II quinohemoprotei 99.1 1.7E-08 5.9E-13 92.6 24.2 308 52-390 66-492 (668)
243 2fp8_A Strictosidine synthase; 99.1 7.1E-08 2.4E-12 80.6 25.2 207 36-260 14-267 (322)
244 1npe_A Nidogen, entactin; glyc 99.1 1E-06 3.4E-11 71.4 31.3 233 98-388 2-240 (267)
245 2iwa_A Glutamine cyclotransfer 99.1 1E-07 3.5E-12 75.6 24.3 196 42-263 22-238 (266)
246 1kv9_A Type II quinohemoprotei 99.1 7.2E-08 2.5E-12 88.6 26.3 165 52-224 117-337 (668)
247 2fp8_A Strictosidine synthase; 99.1 1.3E-07 4.3E-12 79.0 25.6 253 87-387 20-314 (322)
248 1k3i_A Galactose oxidase precu 99.1 8.9E-09 3E-13 94.7 20.0 120 45-178 190-328 (656)
249 1fwx_A Nitrous oxide reductase 99.1 5.1E-08 1.8E-12 85.5 22.8 197 45-262 89-361 (595)
250 1w6s_A Methanol dehydrogenase 99.1 1.5E-07 5.3E-12 84.5 26.0 198 52-268 62-348 (599)
251 2ad6_A Methanol dehydrogenase 99.1 1.9E-07 6.5E-12 84.0 26.2 311 52-390 62-498 (571)
252 3v9f_A Two-component system se 99.0 6E-06 2E-10 77.9 36.8 283 40-386 312-611 (781)
253 3qqz_A Putative uncharacterize 99.0 1.8E-06 6.2E-11 68.1 27.8 210 35-259 21-250 (255)
254 3nol_A Glutamine cyclotransfer 99.0 1.8E-07 6.1E-12 73.3 21.4 185 145-375 45-244 (262)
255 3v9f_A Two-component system se 99.0 2E-05 7E-10 74.2 39.4 280 40-387 362-657 (781)
256 2p4o_A Hypothetical protein; p 99.0 1.4E-06 4.8E-11 72.0 26.8 227 87-376 33-278 (306)
257 1w6s_A Methanol dehydrogenase 99.0 4E-06 1.4E-10 75.4 31.4 167 46-215 111-341 (599)
258 3nol_A Glutamine cyclotransfer 99.0 1.6E-07 5.4E-12 73.6 18.9 181 43-252 45-245 (262)
259 2ad6_A Methanol dehydrogenase 98.9 2.1E-06 7E-11 77.3 28.5 303 52-371 115-522 (571)
260 1flg_A Protein (quinoprotein e 98.9 7.2E-06 2.5E-10 73.9 31.8 56 334-390 465-520 (582)
261 3nok_A Glutaminyl cyclase; bet 98.9 2.5E-07 8.5E-12 72.4 19.2 182 145-374 57-253 (268)
262 2p4o_A Hypothetical protein; p 98.9 2.9E-06 9.9E-11 70.1 26.0 195 41-261 32-241 (306)
263 1flg_A Protein (quinoprotein e 98.9 1.1E-05 3.8E-10 72.6 31.4 162 52-215 117-354 (582)
264 3v64_C Agrin; beta propeller, 98.9 1.9E-05 6.6E-10 66.4 30.6 196 41-262 34-234 (349)
265 3nok_A Glutaminyl cyclase; bet 98.9 6.4E-07 2.2E-11 70.2 19.7 181 42-251 56-254 (268)
266 3mbr_X Glutamine cyclotransfer 98.9 2.3E-06 7.9E-11 66.5 22.7 185 145-375 23-223 (243)
267 2xe4_A Oligopeptidase B; hydro 98.9 1.9E-07 6.5E-12 87.2 19.9 196 42-260 175-398 (751)
268 3tc9_A Hypothetical hydrolase; 98.8 4E-06 1.4E-10 72.6 25.6 155 41-215 137-300 (430)
269 2xbg_A YCF48-like protein; pho 98.8 2.9E-05 9.8E-10 64.7 33.8 280 41-384 36-320 (327)
270 3mbr_X Glutamine cyclotransfer 98.8 5.1E-06 1.7E-10 64.5 22.7 184 41-252 21-224 (243)
271 3tc9_A Hypothetical hydrolase; 98.8 4.3E-06 1.5E-10 72.4 24.0 154 87-262 138-301 (430)
272 3v65_B Low-density lipoprotein 98.8 2.3E-05 7.9E-10 66.9 27.8 254 43-363 79-337 (386)
273 3v65_B Low-density lipoprotein 98.8 2.2E-05 7.5E-10 67.0 27.6 206 35-263 110-319 (386)
274 3v64_C Agrin; beta propeller, 98.8 3.6E-05 1.2E-09 64.7 27.9 202 39-263 71-276 (349)
275 2xe4_A Oligopeptidase B; hydro 98.7 3.8E-06 1.3E-10 78.5 23.8 193 4-213 176-395 (751)
276 1k3i_A Galactose oxidase precu 98.7 7.9E-07 2.7E-11 81.9 18.8 113 90-215 190-322 (656)
277 4hw6_A Hypothetical protein, I 98.7 3.9E-05 1.3E-09 66.5 26.9 197 41-260 139-372 (433)
278 4hw6_A Hypothetical protein, I 98.7 1.7E-05 5.9E-10 68.7 23.5 235 3-261 140-432 (433)
279 3qqz_A Putative uncharacterize 98.6 4.1E-05 1.4E-09 60.4 23.0 164 82-262 23-204 (255)
280 3p5b_L Low density lipoprotein 98.6 0.00015 5E-09 62.2 28.5 206 35-263 106-321 (400)
281 3kya_A Putative phosphatase; s 98.6 0.00011 3.8E-09 63.8 26.7 160 42-214 140-339 (496)
282 1ijq_A LDL receptor, low-densi 98.6 0.00017 5.9E-09 59.7 31.7 184 54-262 3-195 (316)
283 3sov_A LRP-6, low-density lipo 98.6 0.00018 6.1E-09 59.5 27.5 186 54-262 6-197 (318)
284 3p5b_L Low density lipoprotein 98.6 0.00029 1E-08 60.4 31.5 187 54-262 85-277 (400)
285 1ijq_A LDL receptor, low-densi 98.5 0.00025 8.5E-09 58.7 28.9 202 39-264 28-240 (316)
286 3kya_A Putative phosphatase; s 98.5 0.00026 9E-09 61.5 27.2 266 87-388 140-477 (496)
287 2p9w_A MAL S 1 allergenic prot 98.4 0.00037 1.3E-08 56.7 24.2 178 34-215 6-214 (334)
288 3m0c_C LDL receptor, low-densi 98.4 0.0012 4.2E-08 61.4 31.3 187 54-262 397-589 (791)
289 3m0c_C LDL receptor, low-densi 98.3 0.0011 3.7E-08 61.8 28.1 209 35-265 418-635 (791)
290 3sov_A LRP-6, low-density lipo 98.3 0.00083 2.8E-08 55.5 28.8 229 99-388 6-240 (318)
291 2xbg_A YCF48-like protein; pho 98.3 0.0009 3.1E-08 55.7 28.2 223 4-255 38-272 (327)
292 3amr_A 3-phytase; beta-propell 98.3 0.00047 1.6E-08 56.6 22.4 193 153-385 39-262 (355)
293 1n7d_A LDL receptor, low-densi 98.3 2.2E-05 7.4E-10 72.5 15.2 241 61-364 385-634 (699)
294 3a9g_A Putative uncharacterize 98.2 0.0017 5.8E-08 54.5 25.7 233 3-250 30-330 (354)
295 3s94_A LRP-6, low-density lipo 98.2 0.0034 1.2E-07 57.1 37.4 204 39-264 38-245 (619)
296 2p9w_A MAL S 1 allergenic prot 98.2 0.00059 2E-08 55.5 19.7 168 180-386 8-215 (334)
297 2ism_A Putative oxidoreductase 98.2 0.0021 7.3E-08 53.9 24.2 234 3-250 32-333 (352)
298 3amr_A 3-phytase; beta-propell 98.2 0.0011 3.9E-08 54.4 21.4 194 51-261 39-262 (355)
299 2vpj_A Kelch-like protein 12; 98.2 0.00081 2.8E-08 55.2 21.0 145 96-262 14-184 (301)
300 2xzh_A Clathrin heavy chain 1; 98.1 0.0019 6.4E-08 52.2 32.9 268 61-388 48-334 (365)
301 2ism_A Putative oxidoreductase 98.1 0.0025 8.6E-08 53.5 26.7 104 87-204 32-153 (352)
302 2xn4_A Kelch-like protein 2; s 98.1 0.0025 8.7E-08 52.2 22.8 186 52-262 16-229 (302)
303 2vpj_A Kelch-like protein 12; 98.1 0.0029 9.8E-08 51.9 22.9 188 51-262 14-231 (301)
304 2xn4_A Kelch-like protein 2; s 98.1 0.0023 8E-08 52.5 22.0 65 324-388 204-278 (302)
305 1n7d_A LDL receptor, low-densi 98.0 4.1E-05 1.4E-09 70.7 11.3 203 41-264 406-616 (699)
306 1zgk_A Kelch-like ECH-associat 98.0 0.0053 1.8E-07 50.5 22.6 188 50-262 23-240 (308)
307 1zgk_A Kelch-like ECH-associat 97.9 0.0049 1.7E-07 50.7 21.6 145 96-262 24-193 (308)
308 3ii7_A Kelch-like protein 7; p 97.9 0.006 2E-07 50.1 22.7 102 97-215 12-126 (306)
309 1bpo_A Protein (clathrin); cla 97.9 0.0073 2.5E-07 50.9 33.5 268 61-388 47-333 (494)
310 3ei3_A DNA damage-binding prot 97.9 0.022 7.6E-07 55.7 36.9 192 40-252 553-757 (1158)
311 3sre_A PON1, serum paraoxonase 97.9 0.0076 2.6E-07 50.2 22.7 159 88-262 52-252 (355)
312 3pbp_A Nucleoporin NUP82; beta 97.8 0.0038 1.3E-07 52.5 18.7 123 42-170 67-209 (452)
313 3sre_A PON1, serum paraoxonase 97.8 0.0069 2.4E-07 50.4 20.3 200 42-259 51-295 (355)
314 3ii7_A Kelch-like protein 7; p 97.8 0.011 3.8E-07 48.5 26.2 186 53-262 13-225 (306)
315 3ei3_A DNA damage-binding prot 97.8 0.036 1.2E-06 54.3 30.6 184 154-383 844-1059(1158)
316 1xi4_A Clathrin heavy chain; a 97.8 0.0049 1.7E-07 60.0 20.5 269 61-389 47-334 (1630)
317 4asc_A Kelch repeat and BTB do 97.7 0.014 4.6E-07 48.2 21.9 141 99-262 7-174 (315)
318 4asc_A Kelch repeat and BTB do 97.7 0.014 4.7E-07 48.2 23.2 183 54-262 7-221 (315)
319 3pbp_A Nucleoporin NUP82; beta 97.7 0.0077 2.6E-07 50.7 18.9 159 49-212 29-208 (452)
320 1bpo_A Protein (clathrin); cla 97.6 0.029 1E-06 47.4 27.7 217 106-389 47-292 (494)
321 2uvk_A YJHT; unknown function, 97.4 0.043 1.5E-06 46.1 20.5 145 51-214 19-224 (357)
322 2woz_A Kelch repeat and BTB do 97.4 0.043 1.5E-06 45.3 20.0 105 151-262 54-184 (318)
323 4a0p_A LRP6, LRP-6, low-densit 97.4 0.08 2.7E-06 48.2 42.8 334 3-388 124-551 (628)
324 4a0p_A LRP6, LRP-6, low-densit 97.3 0.09 3.1E-06 47.9 40.8 199 40-263 36-238 (628)
325 3das_A Putative oxidoreductase 97.3 0.051 1.8E-06 45.1 25.4 236 3-250 33-326 (347)
326 1tl2_A L10, protein (tachylect 97.3 0.0067 2.3E-07 46.0 12.3 103 3-111 42-158 (236)
327 3s94_A LRP-6, low-density lipo 97.3 0.1 3.4E-06 47.5 35.1 198 144-387 350-552 (619)
328 2woz_A Kelch repeat and BTB do 97.3 0.056 1.9E-06 44.5 23.0 183 54-262 18-231 (318)
329 2uvk_A YJHT; unknown function, 97.2 0.055 1.9E-06 45.4 19.2 53 153-206 65-128 (357)
330 3sbq_A Nitrous-oxide reductase 97.2 0.09 3.1E-06 46.1 22.1 275 55-373 73-452 (638)
331 3a9g_A Putative uncharacterize 97.2 0.071 2.4E-06 44.7 30.4 104 87-204 30-153 (354)
332 2g8s_A Glucose/sorbosone dehyd 97.2 0.074 2.5E-06 44.6 25.7 234 3-249 19-340 (353)
333 2xzh_A Clathrin heavy chain 1; 97.2 0.068 2.3E-06 43.4 28.6 201 46-264 72-292 (365)
334 2g8s_A Glucose/sorbosone dehyd 97.2 0.082 2.8E-06 44.3 29.9 57 324-380 288-348 (353)
335 3s25_A Hypothetical 7-bladed b 97.0 0.11 3.7E-06 42.4 21.3 102 148-262 58-176 (302)
336 2be1_A Serine/threonine-protei 96.9 0.12 4.1E-06 42.7 17.0 193 53-265 11-234 (339)
337 1xi4_A Clathrin heavy chain; a 96.9 0.13 4.4E-06 50.7 19.3 220 106-389 47-292 (1630)
338 2zwa_A Leucine carboxyl methyl 96.7 0.25 8.6E-06 45.7 19.4 152 50-215 396-576 (695)
339 2zwa_A Leucine carboxyl methyl 96.6 0.3 1E-05 45.2 19.2 156 95-263 396-578 (695)
340 1tl2_A L10, protein (tachylect 96.5 0.17 5.8E-06 38.5 18.8 154 87-261 42-207 (236)
341 1cru_A Protein (soluble quinop 96.3 0.5 1.7E-05 41.1 20.8 110 87-204 28-162 (454)
342 2be1_A Serine/threonine-protei 96.0 0.51 1.7E-05 39.0 19.3 112 155-270 11-138 (339)
343 1cru_A Protein (soluble quinop 96.0 0.68 2.3E-05 40.3 32.7 116 40-162 26-163 (454)
344 3ott_A Two-component system se 95.4 1.8 6E-05 40.7 39.5 284 42-387 192-503 (758)
345 3das_A Putative oxidoreductase 95.3 1.1 3.6E-05 37.3 27.9 253 87-373 33-325 (347)
346 3s25_A Hypothetical 7-bladed b 95.1 1.1 3.8E-05 36.4 27.8 172 49-262 22-216 (302)
347 3sbq_A Nitrous-oxide reductase 92.6 1.4 4.9E-05 38.8 10.9 114 87-204 324-453 (638)
348 3qhy_B Beta-lactamase inhibito 91.7 4.3 0.00015 32.5 20.5 184 41-262 63-246 (282)
349 3uc1_A DNA gyrase subunit A; D 91.4 5.2 0.00018 32.9 23.4 210 41-262 42-279 (327)
350 4hvt_A Ritya.17583.B, post-pro 91.0 9.9 0.00034 35.3 21.5 202 43-262 131-381 (711)
351 2wg3_C Hedgehog-interacting pr 89.4 10 0.00034 33.0 28.1 119 41-162 14-158 (463)
352 3b7f_A Glycosyl hydrolase, BNR 88.8 10 0.00034 32.1 29.7 166 40-207 54-254 (394)
353 3qhy_B Beta-lactamase inhibito 88.5 8.3 0.00028 30.9 21.8 144 87-262 25-168 (282)
354 3uc1_A DNA gyrase subunit A; D 87.0 11 0.00039 30.8 21.5 169 40-215 94-278 (327)
355 4gq2_M Nucleoporin NUP120; bet 86.9 19 0.00066 34.8 14.8 72 144-215 237-316 (950)
356 1wp5_A Topoisomerase IV; broke 85.8 13 0.00046 30.4 25.6 154 95-262 3-174 (323)
357 2wg3_C Hedgehog-interacting pr 83.5 22 0.00074 31.0 27.8 101 3-105 15-158 (463)
358 3b7f_A Glycosyl hydrolase, BNR 82.7 21 0.00071 30.1 28.8 105 144-253 116-254 (394)
359 3zwu_A Alkaline phosphatase PH 80.3 7.1 0.00024 35.1 8.3 57 317-373 479-548 (592)
360 3ott_A Two-component system se 80.2 39 0.0013 31.6 41.8 282 41-385 146-447 (758)
361 3no0_A DNA gyrase subunit A; D 78.3 24 0.00081 28.1 23.4 206 40-262 23-246 (276)
362 1suu_A DNA gyrase subunit A; t 77.8 27 0.00092 28.4 26.7 159 95-262 6-181 (312)
363 4a9v_A PHOX; hydrolase, beta-p 73.6 15 0.00052 32.7 8.2 57 317-373 479-548 (592)
364 4gq2_M Nucleoporin NUP120; bet 71.8 75 0.0026 30.8 20.1 35 318-352 240-274 (950)
365 3no0_A DNA gyrase subunit A; D 71.2 37 0.0013 27.0 22.7 206 145-386 26-246 (276)
366 3q6k_A 43.2 kDa salivary prote 70.6 47 0.0016 27.9 21.6 174 41-215 87-305 (381)
367 3l6v_A GYRA, DNA gyrase subuni 70.0 48 0.0016 27.8 26.1 161 93-262 3-180 (370)
368 1wp5_A Topoisomerase IV; broke 69.9 44 0.0015 27.3 26.1 204 50-262 3-225 (323)
369 1zi0_A DNA gyrase subunit A; b 69.4 44 0.0015 27.1 25.0 209 42-262 43-277 (307)
370 1suu_A DNA gyrase subunit A; t 68.9 45 0.0016 27.1 27.3 205 50-263 6-232 (312)
371 3q6k_A 43.2 kDa salivary prote 68.3 53 0.0018 27.6 18.2 85 165-253 124-245 (381)
372 4a9v_A PHOX; hydrolase, beta-p 68.1 47 0.0016 29.8 10.0 62 41-104 476-549 (592)
373 3zwu_A Alkaline phosphatase PH 67.5 23 0.00078 31.9 8.2 59 43-103 478-548 (592)
374 4fhn_B Nucleoporin NUP120; pro 67.0 21 0.00072 35.4 8.7 37 144-180 239-275 (1139)
375 4fhn_B Nucleoporin NUP120; pro 64.1 7 0.00024 38.7 4.8 37 41-77 238-274 (1139)
376 3f7f_A Nucleoporin NUP120; nuc 60.3 18 0.00062 33.3 6.3 35 41-77 222-256 (729)
377 1olz_A Semaphorin 4D; developm 60.0 79 0.0027 29.0 10.4 71 41-111 397-477 (663)
378 3l6v_A GYRA, DNA gyrase subuni 58.5 81 0.0028 26.4 26.2 212 40-262 45-316 (370)
379 3f7f_A Nucleoporin NUP120; nuc 58.3 73 0.0025 29.5 9.7 37 144-182 223-259 (729)
380 3kci_A Probable E3 ubiquitin-p 57.8 84 0.0029 26.4 30.4 115 145-262 107-241 (389)
381 1sqj_A OXG-RCBH, oligoxylogluc 57.6 1.3E+02 0.0044 28.4 20.6 64 40-104 14-83 (789)
382 1zi0_A DNA gyrase subunit A; b 56.9 77 0.0026 25.6 27.6 204 50-262 1-226 (307)
383 2cn3_A Xyloglucanase, beta-1,4 49.9 1.7E+02 0.0056 27.4 18.9 62 41-103 23-90 (737)
384 1q47_A Semaphorin 3A; beta pro 48.0 67 0.0023 28.2 7.7 56 326-381 422-487 (495)
385 3kci_A Probable E3 ubiquitin-p 41.6 1.6E+02 0.0053 24.7 26.8 202 53-262 63-293 (389)
386 3al9_A Plexin-A2; beta-propell 40.4 62 0.0021 28.8 6.4 71 41-111 400-476 (539)
387 3al9_A Plexin-A2; beta-propell 38.8 83 0.0028 28.0 6.9 58 324-381 412-476 (539)
388 3nvq_A Semaphorin-7A; beta-pro 38.5 1.3E+02 0.0046 27.0 8.1 56 326-381 381-444 (590)
389 1q47_A Semaphorin 3A; beta pro 33.6 1.2E+02 0.004 26.7 7.0 70 42-111 405-487 (495)
390 1olz_A Semaphorin 4D; developm 30.8 2.2E+02 0.0074 26.3 8.4 56 326-381 416-477 (663)
391 1sqj_A OXG-RCBH, oligoxylogluc 29.5 3.6E+02 0.012 25.4 19.7 61 143-204 15-83 (789)
392 3mez_B Mannose-specific lectin 28.1 1.3E+02 0.0044 19.7 8.8 24 236-261 60-83 (113)
393 4gz8_A Semaphorin-3A; multi-do 27.8 1.9E+02 0.0066 26.6 7.5 56 326-381 430-495 (667)
394 4gz8_A Semaphorin-3A; multi-do 25.7 1.8E+02 0.0063 26.7 7.0 70 42-111 413-495 (667)
395 3oky_B Putative uncharacterize 24.8 3.1E+02 0.01 24.6 8.0 56 326-381 421-495 (565)
396 1zvt_A Topoisomerase IV subuni 24.3 2.5E+02 0.0087 21.8 16.4 105 156-263 4-115 (256)
397 3a0f_A Xyloglucanase; beta-pro 22.9 4.7E+02 0.016 24.5 19.6 64 39-103 19-93 (763)
398 3hx6_A Type 4 fimbrial biogene 22.7 4.2E+02 0.014 23.8 8.5 56 334-389 222-287 (570)
399 3nvq_A Semaphorin-7A; beta-pro 22.2 3E+02 0.01 24.9 7.5 70 42-111 363-444 (590)
400 3oky_A Plexin-A2; transmembran 21.8 2.8E+02 0.0096 25.6 7.4 58 324-381 411-475 (681)
401 3ol2_B Plexin-B1; beta-propell 20.3 3.2E+02 0.011 24.2 7.3 55 327-381 402-461 (528)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-53 Score=368.38 Aligned_cols=290 Identities=22% Similarity=0.333 Sum_probs=258.6
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.++..... ..+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~---l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE---ECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE---EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 457889999999999999999999999999999999998855443 45677799999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+.+.+..... .+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.++.+
T Consensus 178 d~~~~~~~~~~---------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 178 DFQGFECIRTM---------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp ETTSSCEEECC---------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred eCCCCceeEEE---------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 99876542211 245668999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC--------------------CCeEEEEeCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD--------------------GRYFISNGKD 252 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d 252 (409)
+ +++.+|++++.|+.|++||++ .......+.+|...|.+++|+|+ +.+|++++.|
T Consensus 243 ~-~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D 317 (410)
T 1vyh_C 243 N-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317 (410)
T ss_dssp C-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred C-CCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence 9 899999999999999999975 66777888899999999999996 6789999999
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 332 (409)
+.|++||+++ +..+..+.+|.. .+.+++|+|++++|++|+
T Consensus 318 ~~i~iwd~~~----------------------------------~~~~~~~~~h~~------~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 318 KTIKMWDVST----------------------------------GMCLMTLVGHDN------WVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp SEEEEEETTT----------------------------------TEEEEEEECCSS------CEEEEEECSSSSCEEEEE
T ss_pred CeEEEEECCC----------------------------------CceEEEEECCCC------cEEEEEEcCCCCEEEEEe
Confidence 9999999987 455666777763 345567899999999999
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||.|++|++.
T Consensus 358 ~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999863
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-53 Score=354.30 Aligned_cols=290 Identities=15% Similarity=0.251 Sum_probs=254.3
Q ss_pred eeecCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 35 KVDGMNSRVYTSQFSND----GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.+.+|.+.|++++|+|+ +++|++|+.|++|+||++..+.. .......+|...|.+++|+|++.++++++.|+.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45689999999999985 67999999999999999987632 23344677888999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+||+.+++...... .+...+.+++|+|++++|++++.++.|++||+++++....+..|...|.++
T Consensus 106 lWd~~~~~~~~~~~---------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~ 170 (321)
T 3ow8_A 106 LWDLENGKQIKSID---------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170 (321)
T ss_dssp EEETTTTEEEEEEE---------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred EEECCCCCEEEEEe---------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE
Confidence 99998876432221 123358889999999999999999999999999999998999999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+|+ |++++|++++.||.|++||++ .++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+++
T Consensus 171 ~~s-pdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-------- 237 (321)
T 3ow8_A 171 AYS-PDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-------- 237 (321)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT--------
T ss_pred EEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC--------
Confidence 999 899999999999999999975 6778888999999999999999999999999999999999987
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
......+.+|. ..+.+++|+|++++|++++.|+.|++||+.+++++.+
T Consensus 238 --------------------------~~~~~~~~~h~------~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 238 --------------------------ANLAGTLSGHA------SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp --------------------------CCEEEEECCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred --------------------------cceeEEEcCCC------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence 34455566665 2345678999999999999999999999999999999
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
+.+|...|.+++|+|++++|++++.||.|++||.+
T Consensus 286 ~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 286 FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.7e-52 Score=352.19 Aligned_cols=293 Identities=19% Similarity=0.323 Sum_probs=252.2
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
...+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+... ..|...|.+++|+|++++|++++.|+.+++|
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe---ecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4578899999999999999999999999999999999988655443 3456689999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
++.+........ ....+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|
T Consensus 125 ~~~~~~~~~~~~-----------~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 125 NLKTREGNVRVS-----------RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp ETTTCSBSCEEE-----------EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ECccCCCcceeE-----------EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 998754211110 01124566899999998875 889999999999999999999999999999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+ |++++|++|+.||.|++||++ .+.....+.+|...|.+++|+|++++|++++.||.|++||+++..
T Consensus 193 ~-~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~-------- 259 (340)
T 1got_B 193 A-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-------- 259 (340)
T ss_dssp C-TTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------
T ss_pred C-CCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--------
Confidence 9 789999999999999999976 677788889999999999999999999999999999999998732
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
.+..+..+.. ...+.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 260 --------------------------~~~~~~~~~~----~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 260 --------------------------ELMTYSHDNI----ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp --------------------------EEEEECCTTC----CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --------------------------EEEEEccCCc----ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee
Confidence 2222221111 1124567899999999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+|...|.+++|+|++++|++|+.||.|++||
T Consensus 310 ~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-51 Score=351.09 Aligned_cols=298 Identities=19% Similarity=0.293 Sum_probs=252.4
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
....+.+|.+.|++++|+|++++||+|+.||+|++||..++....... .|...|.+++|+|++.+|++++.|+.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---MPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---cCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 345789999999999999999999999999999999998875554432 34457999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|++.............. + ..|...|.+++|+|++..|++++.|+.|++||+++++.+..+.+|...|.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~-----~----~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKS-----V----AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203 (354)
T ss_dssp EECCCCTTCCSGGGCEE-----E----EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEecccccccccccee-----e----eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence 99875432211111000 0 13566899999999999999999999999999999999999999999999999
Q ss_pred EeCC-CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 192 FADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 192 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
++|. ++++|++|+.||.|++||++ .+.....+.+|...|.+++|+|++.+|++++.|+.|++||++...
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~------ 273 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR------ 273 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------
Confidence 9853 56899999999999999976 677888889999999999999999999999999999999998732
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
.+..+..+... ..+.+++|+|++++|++|+.|+.|++||+.+++.+..
T Consensus 274 ----------------------------~~~~~~~~~~~----~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 321 (354)
T 2pbi_B 274 ----------------------------EVAIYSKESII----FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321 (354)
T ss_dssp ----------------------------EEEEECCTTCC----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred ----------------------------EEEEEcCCCcc----cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE
Confidence 22222222111 1234567999999999999999999999999999999
Q ss_pred eccCCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 351 LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+.+|...|++++|+|++++|++++.||.|++|+
T Consensus 322 l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 322 LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999996
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-51 Score=348.14 Aligned_cols=316 Identities=18% Similarity=0.291 Sum_probs=247.9
Q ss_pred ceeecCCC-CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNS-RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~-~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
.++.+|.+ .|++++|+|+|++||+|+.|++|+|||++++..........+|...|.+++|+|++++|++++.|+.+++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 46778987 99999999999999999999999999998875444444456788899999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe---eeeEEcCCCCCeEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---CSLRIPAHKSDVNT 189 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~v~~ 189 (409)
++..+....... ..+|...|.+++|+|++++|++++.|+.|++||+.++. .+..+.+|...|.+
T Consensus 89 ~~~~~~~~~~~~-------------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 89 KKNQDDFECVTT-------------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp EECCC-EEEEEE-------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred EccCCCeEEEEE-------------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence 987654322111 12466689999999999999999999999999998763 45667889999999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
++|+ |++++|++++.|+.|++||.+. ........+.+|...|.+++|+|++++|++++.|+.|++||..........
T Consensus 156 ~~~~-p~~~~l~s~s~d~~i~~w~~~~--~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 156 VVWH-PSQELLASASYDDTVKLYREEE--DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp EEEC-SSSSCEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred EEEC-CCCCEEEEEeCCCcEEEEEecC--CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc
Confidence 9999 8899999999999999999751 122345678899999999999999999999999999999997542211110
Q ss_pred cccccccccccccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA-- 346 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~-- 346 (409)
.... ..+....+..+.+ |. ..+++++|+|++..|++++.|+.|++|+...+.
T Consensus 233 ~~~~-------------------~~~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 287 (345)
T 3fm0_A 233 ACSG-------------------SDPSWKCICTLSGFHS------RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP 287 (345)
T ss_dssp CCC----------------------CEEEEEEEECSSCS------SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT
T ss_pred eeec-------------------cCCccceeEEecCCCC------CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc
Confidence 0000 0000112223332 22 345677899999999999999999999987542
Q ss_pred -------eEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCccc
Q 015301 347 -------QVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 347 -------~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
......+|...|++++|+|++. +|++++.||.|++|++...+..
T Consensus 288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 1223468999999999999985 9999999999999999876543
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.7e-52 Score=358.66 Aligned_cols=307 Identities=20% Similarity=0.320 Sum_probs=254.0
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.++.+|.+.|++++|+|++++|++|+.|++|+|||+.++..... ...|...|.+++|+|++++|++|+.|+.+++|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~---~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA---IKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE---EECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE---EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 47899999999999999999999999999999999998865544 344666899999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEE-----cCCCCCe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRI-----PAHKSDV 187 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~v 187 (409)
+.+....... ........+|...+.++.|+|+ +..|++|+.|+.|++||+.+++.+..+ .+|...|
T Consensus 137 ~~~~~~~~~~--------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 137 LSSQADRDGN--------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp CCCCSSCCCS--------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CCCCccccCC--------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 9764321100 0011122356778999999996 457999999999999999999988776 6799999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.+++|+|.++++|++|+.|+.|++||++ ........+.+|...|.+++|+|++++|++++.||+|++||+++...
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-- 283 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLR---ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-- 283 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETT---TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE--
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECC---CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE--
Confidence 9999997799999999999999999986 24466778889999999999999999999999999999999987432
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccce-eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL-RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
+..+..+... ......+.+++|+|+|++|++|+.||.|++||+.+++
T Consensus 284 --------------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 284 --------------------------------LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp --------------------------------EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred --------------------------------EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 2222221110 0011224566899999999999999999999999999
Q ss_pred eEEEe----ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 347 QVAKL----DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+..+ .+|.+.|++++|+|++++|++|+.||.|++|++....
T Consensus 332 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 88777 6899999999999999999999999999999997653
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-51 Score=352.02 Aligned_cols=298 Identities=19% Similarity=0.241 Sum_probs=233.0
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeC------CCcEEEEEcCCCeeeeee-eecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQ------ESNIKVYNVDKNWKIQKD-IETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~------d~~i~vw~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
...+|...|++++|||||++||+|+. |+.|++|+..++...... .....|...|.+++|+|++++ ++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCC
Confidence 34689999999999999999999997 778999998776433222 223456668999999999865 5677899
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.|++||+.+++......... .+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~-----------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAK-----------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp CEEEC--------CCCCEEE-----------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEEeeccccceeEEEeecc-----------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 99999998876543332211 2466689999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee--eeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG--VLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 264 (409)
.+++|+|....++++++.||.|++||++ .++... ....|...+.+++|+|++ .+|++++.|+.|++||+++
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-- 258 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTR----KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-- 258 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTT----SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC--
T ss_pred EEEEEccCCCceeeeeccCCceEEEECC----CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC--
Confidence 9999995455689999999999999986 333333 334567789999999974 6788999999999999987
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEcc
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~ 343 (409)
.+.+..+.+|.. .+.+++|+|++ ++|++|+.|++|+|||++
T Consensus 259 --------------------------------~~~~~~~~~~~~------~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 259 --------------------------------PDSAQTSAVHSQ------NITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp --------------------------------GGGCEEECCCSS------CEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred --------------------------------CcEeEEEeccce------eEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 344556666653 34566788887 689999999999999999
Q ss_pred CCceEEEeccCCcceeeeEEec-CcCeEEeecCCCeEEEEecCCCcc
Q 015301 344 SGAQVAKLDFHNAPVRDCCWHP-IYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 344 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+++.+..+ +|.+.|++++|+| ++++|+|++.||.|++|+++...+
T Consensus 301 ~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 301 FSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 99887665 6999999999998 788999999999999999976544
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.6e-50 Score=335.00 Aligned_cols=293 Identities=15% Similarity=0.205 Sum_probs=247.2
Q ss_pred CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
....++.+|.+.|++++|+|++++|++++.||+|++||++++..+... ..|..+|.+++|+|++++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 345678999999999999999999999999999999999988655543 34566899999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNT 189 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~ 189 (409)
+||+.+++..... .+|...|.+++|+|++++|++|+.|+.|++||++++ .....+.+|...|.+
T Consensus 81 vwd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 81 VFNYNTGEKVVDF---------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp EEETTTCCEEEEE---------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred EEECCCCcEEEEE---------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 9999887643221 145568999999999999999999999999999877 555678899999999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
++|+|.++.+|++|+.|++|++||++ ....... ..+|...+..+.|+| ++.+|++++.|+.|++||+++
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---- 217 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---- 217 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence 99996578999999999999999976 3333333 345667899999986 678999999999999999987
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
+..+..+.+|.. .+...+|+|++++|++|+.||.|++||+.+++
T Consensus 218 ------------------------------~~~~~~~~~h~~------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 218 ------------------------------KSCVATLEGHMS------NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ------------------------------TEEEEEEECCSS------CEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------------CccceeeCCCCC------CEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 455667777763 34456799999999999999999999999999
Q ss_pred eEEEeccCCcceeeeEEecCcC--eEEeecCCCeEEEEecCC
Q 015301 347 QVAKLDFHNAPVRDCCWHPIYP--MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 347 ~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~ 386 (409)
.+..+..|...+.+++|+|++. ++++|+.| .+.+|++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred eeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 9999999999999999999876 57777655 577888765
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.8e-51 Score=344.60 Aligned_cols=294 Identities=18% Similarity=0.228 Sum_probs=233.3
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------e-eeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKN-------W-KIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-------~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
..|...|.+++|+|||++|++++ |+++++||.... . ..........+...|.+++|+|++ .|++|+.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 46788899999999999999887 678888873210 0 000001112244579999999985 6889999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
|++||+.+++......... .+|...|++++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.
T Consensus 105 v~lWd~~~~~~~~~~~~~~-----------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCK-----------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEEECTTSSCEEEEEEE-----------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeccCCCceeEeeccc-----------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 9999998876543322111 24666899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee--eccccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL--MGHLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
+++|+|.+..+|++++.|++|++||++ .++....+ ..|...+.+++|+|+ +++|++++.||.|++||+++
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--- 246 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTR----CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--- 246 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETT----SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred EEEecCCCCCceeeecccccccccccc----ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC---
Confidence 999995555789999999999999976 45554444 345567899999985 56788999999999999987
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEccC
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~~ 344 (409)
++.+..+.+|.. .+.+++|+|++ ++|++|+.|++|+|||+.+
T Consensus 247 -------------------------------~~~~~~~~~h~~------~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 247 -------------------------------TSCVLSSAVHSQ------CVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp ---------------------------------CCEEEECCSS------CEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred -------------------------------CcEEEEEcCCCC------CEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 455677777763 34566899987 5899999999999999988
Q ss_pred CceEEEeccCCcceeeeEEecCcC-eEEeecCCCeEEEEecCCCc
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYP-MLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 388 (409)
++.+ .+.+|.+.|++++|+|+++ +|+++|.||+|++|+++...
T Consensus 290 ~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 290 SELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 8764 5688999999999999987 57799999999999997643
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.1e-50 Score=365.62 Aligned_cols=360 Identities=13% Similarity=0.184 Sum_probs=249.6
Q ss_pred ceeeEEecCceeEeeccce-----EEEEeeecCCCceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH-----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
.++++|||||+++++.+.. .++.+-.......+.+|.+.|++++|+|++. .|++|+.|++|++||..+++...
T Consensus 106 v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~- 184 (611)
T 1nr0_A 106 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS- 184 (611)
T ss_dssp EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-
T ss_pred eEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee-
Confidence 5689999999988875432 2333323344557899999999999999987 59999999999999988764433
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (409)
...+|...|.+++|+|++++|++++.|+.|++||+.+++......... ....+|...|.+++|+|++++|
T Consensus 185 --~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--------~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 185 --TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--------LKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp --EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--------SSSCSSSSCEEEEEECTTSSEE
T ss_pred --eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc--------ccccccCCCEEEEEECCCCCEE
Confidence 345688899999999999999999999999999998776432221000 0112577789999999999999
Q ss_pred EEEEecCeEEEEECCCCeeee-------------------------------------------EEcCCCCCeEEEEEeC
Q 015301 158 VAAGSDNFIYVYDLQANKCSL-------------------------------------------RIPAHKSDVNTVCFAD 194 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~ 194 (409)
++++.|+.|++||+.+++.+. .+.+|...|.+++|+
T Consensus 255 ~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s- 333 (611)
T 1nr0_A 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS- 333 (611)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC-
T ss_pred EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe-
Confidence 999999999999998876543 335799999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc--------
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS-------- 265 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------- 265 (409)
|++++|++++.|+.|++||+. .+.....+ .+|...|.+++|++++ .+++++.|+.+++|++.....
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~----~~~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 408 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDIS----TGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETT----TCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred CCCCEEEEEeCCCcEEEEECC----CCceeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeee
Confidence 899999999999999999975 22222222 3344455555555433 344444555555554332110
Q ss_pred ------------------------------cccccccccccccccccccccccceeccc-cCccceeee-----------
Q 015301 266 ------------------------------NTTDNSRLRDYDWDYRWMEYPSYARRLKH-PHDQSLATY----------- 303 (409)
Q Consensus 266 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------- 303 (409)
....... ........+.+.+....+.. .....+..+
T Consensus 409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred ecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee--ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee
Confidence 0000000 00000011111111111100 001111111
Q ss_pred -ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC-CceEEE--eccCCcceeeeEEecCcCeEEeecCCCeE
Q 015301 304 -KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS-GAQVAK--LDFHNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
.+|. ..+.+++|+|+|++|++++.|+.|++|++.+ ++.+.. +.+|...|++++|+||+++|++++.|++|
T Consensus 487 ~~~h~------~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 487 TIVHP------AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEECS------SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccCCC------CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 2222 3456779999999999999999999999988 555443 34599999999999999999999999999
Q ss_pred EEEecCCCc
Q 015301 380 VRWEIPGIG 388 (409)
Q Consensus 380 ~iw~~~~~~ 388 (409)
++|++..+.
T Consensus 561 ~lW~~~~~~ 569 (611)
T 1nr0_A 561 IVWNMNKPS 569 (611)
T ss_dssp EEEETTCTT
T ss_pred EEEECCCcc
Confidence 999998755
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-49 Score=363.78 Aligned_cols=324 Identities=14% Similarity=0.156 Sum_probs=261.2
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..+++|||||++++..... .++..........+.+|...|++++|+|+|++||+|+.|++|+|||+.++.... ....
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~-~~~~ 99 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-KTTI 99 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-EEEE
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCccee-eEee
Confidence 4578999999987775433 344443345566889999999999999999999999999999999997553322 1234
Q ss_pred ccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-e
Q 015301 82 KALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-E 156 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 156 (409)
..|...|.+++|+|+++.|++++.+ +.|++||... ... ...+|...|.+++|+|++. .
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~~---------------~l~gh~~~v~~v~f~p~~~~~ 162 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNG---------------NLTGQARAMNSVDFKPSRPFR 162 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCB---------------CCCCCSSCEEEEEECSSSSCE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--Ccc---------------eecCCCCCceEEEECCCCCeE
Confidence 5577799999999999999998865 4788887432 111 1135666899999999987 5
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-------c
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-------G 229 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~ 229 (409)
|++++.|+.|++||..+++....+.+|...|.+++|+ |++++|++++.|++|++||++ .+.....+. +
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCS
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccc
Confidence 9999999999999999999999999999999999999 899999999999999999965 555555553 7
Q ss_pred cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 230 HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 230 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
|.+.|.+++|+|++++|++++.|++|++||+++... +..+..+...
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~----------------------------------~~~~~~~~~~ 283 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV----------------------------------EKTIPVGTRI 283 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------------------EEEEECCSSG
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce----------------------------------eeeecCCCCc
Confidence 999999999999999999999999999999987332 2222211100
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.. ......+ +++.+++++.|+.+++||..+++....+.+|...|++++|+|++++|++++.||.|++||+.++..
T Consensus 284 ~~---~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 284 ED---QQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp GG---CEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred cc---eeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 00 0111223 578899999999999999999998889999999999999999999999999999999999987643
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-49 Score=360.84 Aligned_cols=327 Identities=25% Similarity=0.346 Sum_probs=270.7
Q ss_pred ceeeEEecCceeEeeccceEEEEee--ecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYL--PVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
.++++|+|||+++++.+......++ ..+....+.+|...|++++|+|++++|++++.|+.|++|+.... ... ..
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~---~~ 299 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQ---TL 299 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEE---EE
Confidence 5789999999988775543222222 22333477899999999999999999999999999999997643 332 24
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCC-----------------------
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADG----------------------- 138 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 138 (409)
.+|...|.+++|+|+++.|++++.|+.|++||..................+.+.+..
T Consensus 300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~ 379 (577)
T 2ymu_A 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 379 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEE
T ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEE
Confidence 567779999999999999999999999999998765443222222222222222221
Q ss_pred --CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccc
Q 015301 139 --DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRC 216 (409)
Q Consensus 139 --~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 216 (409)
..|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+ |++++|++++.|+.|++||.
T Consensus 380 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~v~~w~~-- 455 (577)
T 2ymu_A 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNR-- 455 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET--
T ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEcCCCEEEEEEC--
Confidence 157778999999999999999999999999995 567788889999999999999 89999999999999999995
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
.++....+.+|...|.+++|+|++++|++++.|+.|++||...
T Consensus 456 ---~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---------------------------------- 498 (577)
T 2ymu_A 456 ---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------------------------------- 498 (577)
T ss_dssp ---TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS----------------------------------
T ss_pred ---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC----------------------------------
Confidence 5677788899999999999999999999999999999999643
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
+.+..+.+|.. .+.+++|+|++++|++++.||.|++||. +++++..+.+|.+.|++++|+||+++|+|++.|
T Consensus 499 -~~~~~~~~h~~------~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 499 -QLLQTLTGHSS------SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp -CEEEEEECCSS------CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred -CEEEEEeCCCC------CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 45666777763 3456689999999999999999999995 788999999999999999999999999999999
Q ss_pred CeEEEEe
Q 015301 377 CNIVRWE 383 (409)
Q Consensus 377 g~i~iw~ 383 (409)
|+|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-48 Score=327.99 Aligned_cols=292 Identities=28% Similarity=0.445 Sum_probs=247.8
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.+|.+.|++++|+|++++|++++.||.|++|++.++..... ...|...|.+++|+|++++|++++.|+.|++||
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 46789999999999999999999999999999999988755443 345777899999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
+.+++..... .+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+
T Consensus 94 ~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 94 VSSGKCLKTL---------------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp TTTCCEEEEE---------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCCCcEEEEE---------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence 9887543221 1345579999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+++++|++++.||.|++||++ .+.....+ ..+...+..++|+|++++|++++.|+.|++||+++.
T Consensus 159 -~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------- 224 (312)
T 4ery_A 159 -RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--------- 224 (312)
T ss_dssp -TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------
T ss_pred -CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------
Confidence 899999999999999999976 44544443 456678999999999999999999999999999873
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
..+..+.+|.......... ...+++.+|++|+.||.|++||+.+++.+..+.
T Consensus 225 -------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 225 -------------------------KCLKTYTGHKNEKYCIFAN---FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp -------------------------EEEEEECSSCCSSSCCCEE---EECSSSCEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred -------------------------cEEEEEEecCCceEEEEEE---EEeCCCcEEEEECCCCEEEEEECCCchhhhhhh
Confidence 3344455544322221111 223578999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeec--CCCeEEEEecC
Q 015301 353 FHNAPVRDCCWHPIYPMLISSS--WDCNIVRWEIP 385 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 385 (409)
+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 277 ~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 277 GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999999999999986 69999999964
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-48 Score=328.64 Aligned_cols=291 Identities=18% Similarity=0.279 Sum_probs=243.9
Q ss_pred ceeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee--eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWK--IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
.+|.+|.+.|++++|+|++ ++|++|+.|++|++|++..... ........+|...|.+++|+|++++|++++.|+.|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 3688999999999999965 8999999999999999864321 122344567888999999999999999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+||+.+++..... .+|...|.+++|+|++.+|++++.|+.|++||++ ++.+..+.+|...|.++
T Consensus 91 ~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 91 LWDVATGETYQRF---------------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EEETTTTEEEEEE---------------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred EEECCCCCeeEEE---------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 9999887643221 1456689999999999999999999999999996 56677888999999999
Q ss_pred EEeCC-----CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 191 CFADE-----TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 191 ~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
++.|. ++..|++++.|+.|++||++ .......+.+|...|.+++|+|++++|++++.||.|++||+++.
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-- 228 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-- 228 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--
Confidence 99942 34589999999999999975 66777788899999999999999999999999999999999872
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
+.+..+..+. .+.+++|+|++.+|++++.+ .+++|++...
T Consensus 229 --------------------------------~~~~~~~~~~-------~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 229 --------------------------------KAMYTLSAQD-------EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp --------------------------------EEEEEEECCS-------CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred --------------------------------cEEEEecCCC-------cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 3344444332 24567899999999988765 4999999888
Q ss_pred ceEEEec--------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 346 AQVAKLD--------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 346 ~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..+..+. .|...+.+++|+|||++|++++.||.|++||+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 7776664 3456799999999999999999999999999865
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-48 Score=336.37 Aligned_cols=301 Identities=25% Similarity=0.425 Sum_probs=242.4
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc---------------cccceEEEEEeCCCCcEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK---------------ALRWTITDTSLSPDQRFLV 101 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~ 101 (409)
.+|.+.|++++|+|||++||+|+ ++++++|++.++..+....... .+...|.+++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 36999999999999999999987 6789999999886554432211 1222499999999999999
Q ss_pred EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc
Q 015301 102 YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 181 (409)
+|+.|+.|++||+.+++..... .+|...|.+++|+|++++|++++.|+.|++||+++++....+.
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~---------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMIL---------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEE---------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 9999999999999877543221 2456689999999999999999999999999999998887776
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-------eccccceeEEEEcCCCCeEEEEeCCCc
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-------MGHLEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
+...+.+++|+|.++++|++++.||.|++||++ .+.....+ .+|...|.+++|+|++++|++++.|+.
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 567899999996699999999999999999975 44444444 578999999999999999999999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|++||+++......... .........+.+|.. .+.+++++|++++|++|+.|
T Consensus 280 v~~wd~~~~~~~~~~~~----------------------~~~~~~~~~~~~h~~------~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKT----------------------PNSGTCEVTYIGHKD------FVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp EEEEEC-------------------------------------CEEEEEECCSS------CEEEEEECGGGCEEEEEETT
T ss_pred EEEEECCCCCCcccccC----------------------CCCCcceEEEecccC------cEEEEEECCCCCEEEEEeCC
Confidence 99999986432111000 001223445556652 34566889999999999999
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEec------CcCeEEeecCCCeEEEEecCC
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP------IYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~ 386 (409)
+.|++||+.+++++..+.+|...|.+++|++ ++++|++|+.||.|++|++..
T Consensus 332 ~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 332 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999886 678999999999999999864
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-48 Score=327.78 Aligned_cols=307 Identities=19% Similarity=0.269 Sum_probs=230.2
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+.+|.++|++++|+|+ +||+|+.|++|++|++..+. ..........|...|.+++|+|++++|++++.|+.|++|
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 468899999999999987 99999999999999998752 222222233488899999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC----CeeeeEEcCCCCCeE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA----NKCSLRIPAHKSDVN 188 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~v~ 188 (409)
|+......... ........+|...|.+++|+|++++|++|+.|+.|++||+.. .+.+..+.+|...|.
T Consensus 86 ~~~~~~~~~~~--------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 86 AKEESADRTFE--------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp EC-------CC--------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred EcccCcCcccc--------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 98643211000 000111235677899999999999999999999999999943 245677889999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC--CCeEEEEeCCCcEEEeeCCCCccc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
+++|+ |++.+|++++.|++|++||.+. .....+..+.+|...|.+++|+|+ +.+|++++.|++|++||++.....
T Consensus 158 ~v~~~-p~~~~l~s~s~D~~i~iW~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 158 HVIWH-PSEALLASSSYDDTVRIWKDYD--DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234 (330)
T ss_dssp EEEEC-SSSSEEEEEETTSCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred EEEEC-CCCCEEEEEcCCCeEEEEECCC--CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence 99999 7899999999999999999751 122567788899999999999998 678999999999999998763211
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
... .......+.. |. ..+++++|++++ +|++++.||.|++||..++
T Consensus 235 ~~~--------------------------~~~~~~~~~~~h~------~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 235 DQQ--------------------------EWVCEAILPDVHK------RQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp SCE--------------------------EEEEEEECCSCCS------SCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ccc--------------------------eeEEeeecccccc------cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 000 0011122222 32 234566777654 8999999999999999877
Q ss_pred c--eEEE-eccCCc-ceeeeEEec--CcCeEEeecCCCeEEEEecCC
Q 015301 346 A--QVAK-LDFHNA-PVRDCCWHP--IYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 346 ~--~~~~-~~~~~~-~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~ 386 (409)
+ .+.. +.+|.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 282 ~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4 3333 367877 899999999 688999999999999999864
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.1e-48 Score=329.19 Aligned_cols=319 Identities=15% Similarity=0.195 Sum_probs=259.4
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee-
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI- 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~- 79 (409)
..+++|||||++++..... ..+............+|.+.|++++|+|++++|++++ ||.|++|++.++.......
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~ 90 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec
Confidence 4679999999988754321 1111111122234568999999999999999999999 9999999998764333222
Q ss_pred -ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 80 -ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 80 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
....|...|.+++|+|++++|++++.|+.|++||+.+++........ .|...+.+++|+|++++++
T Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-------------SSAPACYALAISPDSKVCF 157 (337)
T ss_dssp EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-------------CSSSCEEEEEECTTSSEEE
T ss_pred ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-------------cCCCceEEEEECCCCCEEE
Confidence 22357779999999999999999999999999999887532222111 2444799999999999999
Q ss_pred EEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
+++.|+.|++||+++++.+..+..|...|.+++|+ +++++|++++.||.|++||++ .......+ .+...+.+++
T Consensus 158 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~v~~~~ 231 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLG 231 (337)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEE
T ss_pred EEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC-CCCCEEEEEecCCcEEEEECC----CCceEeee-cCCCceEEEE
Confidence 99999999999999999999999999999999999 789999999999999999975 45555444 4778899999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
|+|+++++++++.|+.|++||+++.. ...+..|. ..+..
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~-----------------------------------~~~~~~~~------~~v~~ 270 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPD-----------------------------------KYQLHLHE------SCVLS 270 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSC-----------------------------------EEEECCCS------SCEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCC-----------------------------------eEEEcCCc------cceeE
Confidence 99999999999999999999998732 22233333 23456
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 789999999999999999999999999888555 48889999999999999999999999999997
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.5e-48 Score=327.43 Aligned_cols=292 Identities=16% Similarity=0.275 Sum_probs=236.3
Q ss_pred CceeecCCCCeEEEEE-----CC-CCCEEEEEeCCCcEEEEEcCCCee----eeeeeecccccceEEEEEeCCCCcEEEE
Q 015301 33 PWKVDGMNSRVYTSQF-----SN-DGSFFVAASQESNIKVYNVDKNWK----IQKDIETKALRWTITDTSLSPDQRFLVY 102 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~-----s~-~~~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 102 (409)
...+.+|.+.|++++| ++ ++++|++|+.|++|++||+..... ........+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3578999999999999 77 999999999999999999976421 1223345678889999999999999999
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE--
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-- 180 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-- 180 (409)
++.|+.|++||+.+++..... .+|...|.+++|+|++++|++++.|+.|++||+.... ....
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~---------------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~ 157 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRF---------------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAE 157 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEE---------------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCT
T ss_pred EcCCCcEEEEECCCCcEEEEE---------------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeec
Confidence 999999999999887543211 1456689999999999999999999999999997433 3333
Q ss_pred -cCCCCCeEEEEEeCCCC----------cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEE
Q 015301 181 -PAHKSDVNTVCFADETG----------HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISN 249 (409)
Q Consensus 181 -~~~~~~v~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 249 (409)
..|...|.+++|+ +++ .+|++++.||.|++||. .......+.+|...|.+++|+|++++|+++
T Consensus 158 ~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 158 KENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp TTSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 3688999999999 554 78999999999999994 455667788999999999999999999999
Q ss_pred eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEE
Q 015301 250 GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 329 (409)
Q Consensus 250 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 329 (409)
+.||.|++||++... .....+... ..+.+++|+|++.+++
T Consensus 232 s~dg~v~iwd~~~~~---------------------------------~~~~~~~~~-------~~v~~v~~sp~~~~la 271 (343)
T 2xzm_R 232 GKDKKLLIWDILNLT---------------------------------YPQREFDAG-------STINQIAFNPKLQWVA 271 (343)
T ss_dssp ETTCEEEEEESSCCS---------------------------------SCSEEEECS-------SCEEEEEECSSSCEEE
T ss_pred cCCCeEEEEECCCCc---------------------------------ccceeecCC-------CcEEEEEECCCCCEEE
Confidence 999999999985421 111112111 1245668999998887
Q ss_pred EEeCCCeEEEEEccCCceEE--Eec-----------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 330 TGSSDNSVYIYDLVSGAQVA--KLD-----------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 330 ~~~~dg~v~i~d~~~~~~~~--~~~-----------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
++ .|+.|++||+.+++... .+. +|...|.+++|+|++++|++|+.||.|++|+++++
T Consensus 272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 65 57789999998776533 443 67889999999999999999999999999998654
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.8e-47 Score=347.49 Aligned_cols=329 Identities=27% Similarity=0.381 Sum_probs=267.4
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+++++|||||+++++++.+ .+|+ ...+...++.+|.+.|++++|+|||++||+++.|++|+|||.... .+. .
T Consensus 19 V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~-~~~---~ 93 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQ---T 93 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---E
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC-EEE---E
Confidence 6899999999999886543 3444 233444688999999999999999999999999999999997543 333 3
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece--------------------------------
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI-------------------------------- 128 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~-------------------------------- 128 (409)
..+|...|.+++|+|++++|++++.|+.+++|+...............
T Consensus 94 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (577)
T 2ymu_A 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 173 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE
T ss_pred EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeee
Confidence 456777999999999999999999999999999764332111100000
Q ss_pred ---------eeeeeeecCC-------------------------CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC
Q 015301 129 ---------HKGLDFSADG-------------------------DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN 174 (409)
Q Consensus 129 ---------~~~~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 174 (409)
.....+.+.. ..|...|.+++|+|++++|++++.|+.|++||. ++
T Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~ 252 (577)
T 2ymu_A 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 252 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TS
T ss_pred eeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence 0000111110 146778999999999999999999999999996 46
Q ss_pred eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc
Q 015301 175 KCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
+.+..+.+|...|.+++|+ +++..|++++.|+.|++||. .+.....+.+|...|.+++|+|++++|++++.|+.
T Consensus 253 ~~~~~~~~~~~~v~~v~~~-~d~~~l~~~~~d~~i~~w~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFR-PDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEET-----TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CEEEEEecCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEeC-----CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 7788889999999999999 89999999999999999995 45677788899999999999999999999999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|++||+.. ..+..+.+|. ..+.+++|+|++++|++++.|
T Consensus 327 i~~w~~~~-----------------------------------~~~~~~~~~~------~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 327 VKLWNRNG-----------------------------------QHLQTLTGHS------SSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp EEEEETTS-----------------------------------CEEEEECCCS------SCEEEEEECTTSSEEEEEETT
T ss_pred EEEEeCCC-----------------------------------CeeEEEeCCC------CCEEEEEECCCCCEEEEEeCC
Confidence 99999765 2334444444 234556899999999999999
Q ss_pred CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 335 NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 335 g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
|.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||...
T Consensus 366 g~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~ 416 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416 (577)
T ss_dssp SEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC
T ss_pred CEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 99999995 6788899999999999999999999999999999999999654
No 20
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-48 Score=337.78 Aligned_cols=336 Identities=15% Similarity=0.209 Sum_probs=263.0
Q ss_pred cceeeEEecCce-eEeec----------cc---eEEEEeeecC--CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 015301 3 VGREVNYSGRGR-FSAAD----------SC---HVLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKV 66 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~----------~~---~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~v 66 (409)
...+++|||||+ +++++ +. ..+|...... .......|...|++++|+|++++|++++.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 356899999997 77766 22 3455544332 13334479999999999999999999999999999
Q ss_pred EEcCCCee-eeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCccee
Q 015301 67 YNVDKNWK-IQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFG 144 (409)
Q Consensus 67 w~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (409)
|++..... .........|...|.+++|+|+ +++|++++.|+.|++||+.+.+......... .......|...
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~ 167 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL------TPGQSMSSVDE 167 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB------CCCCSCCSSCC
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc------ccccccCCCCC
Confidence 99987211 1123345567789999999998 8999999999999999998876211000000 00011245668
Q ss_pred eEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcCC------CCCeEEEEEeCCCCcEEEEeeCCC---eEEEecc
Q 015301 145 IFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPAH------KSDVNTVCFADETGHLIFSGSDDS---LCKVWDR 214 (409)
Q Consensus 145 v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~ 214 (409)
|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|.+..++++++.|+ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999998 789999999999999999999998888766 789999999944457999999998 9999998
Q ss_pred cccccCCceeeeee-ccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 215 RCFISKGRANGVLM-GHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 215 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
+. .......+. +|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 248 ~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~------------------------------ 294 (416)
T 2pm9_A 248 RN---ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES------------------------------ 294 (416)
T ss_dssp TS---TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS------------------------------
T ss_pred CC---CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC------------------------------
Confidence 62 225566677 8999999999999 899999999999999999987
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEccCCceEEEec-------------------
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVSGAQVAKLD------------------- 352 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~------------------- 352 (409)
...+..+.+|.. .+.+++|+|++ .+|++++.||.|++||+.+++......
T Consensus 295 ----~~~~~~~~~~~~------~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (416)
T 2pm9_A 295 ----AEQLSQFPARGN------WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR 364 (416)
T ss_dssp ----CCEEEEEECSSS------CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------------------
T ss_pred ----CccceeecCCCC------ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccc
Confidence 344556666652 34566899998 899999999999999998765332211
Q ss_pred ----------------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 353 ----------------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 353 ----------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.|..++.+++|+|+|++|++++.||.|++|++.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16678889999999999999999999999999764
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.5e-46 Score=316.01 Aligned_cols=293 Identities=19% Similarity=0.267 Sum_probs=240.1
Q ss_pred eeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 35 KVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
+|+||.+.|++++|+|+ +++||||+.|++|+|||+...+.. .......+|...|.+++|+|++++|++++.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 68899999999999998 689999999999999999875332 223345678889999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee-eEEcCCCCCeEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS-LRIPAHKSDVNTV 190 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~v~~~ 190 (409)
|+............ +...+....+++++++|++++.|+.+++||+...... ....+|...+..+
T Consensus 113 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 113 WDLTTGTTTRRFVG---------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp EETTTTEEEEEEEC---------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred EeecccceeeeecC---------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 99987654332221 2235788899999999999999999999999766543 3456799999999
Q ss_pred EEeCC-CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 191 CFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 191 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
+|++. ...++++++.|+.|++||++ .......+.+|...|.+++|+|++++|++++.||.|++||+++.
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~------ 247 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG------ 247 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC------
Confidence 99843 24578899999999999975 77788888999999999999999999999999999999999872
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
..+..+..+. .+..+.++|++.+ ++++.|+.|++||++++..+.
T Consensus 248 ----------------------------~~~~~~~~~~-------~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 248 ----------------------------KHLYTLDGGD-------IINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp ----------------------------EEEEEEECSS-------CEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEE
T ss_pred ----------------------------ceeeeecCCc-------eEEeeecCCCCce-eeccCCCEEEEEECCCCeEEE
Confidence 3344444433 2344567887665 556679999999999887766
Q ss_pred Eec---------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 350 KLD---------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 350 ~~~---------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+. +|...|++++|+|++++|++|+.||.|++||+.++.
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 553 688899999999999999999999999999998764
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-46 Score=328.60 Aligned_cols=332 Identities=17% Similarity=0.188 Sum_probs=262.6
Q ss_pred cceeeEEecCce-eEeeccc---eEEEEe----eecC------CCceeec----------CCCCeEEEEECCCCCEEEEE
Q 015301 3 VGREVNYSGRGR-FSAADSC---HVLSRY----LPVN------GPWKVDG----------MNSRVYTSQFSNDGSFFVAA 58 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~---~~~~~~----~~~~------~~~~l~~----------h~~~v~~~~~s~~~~~l~t~ 58 (409)
.+.+++|||||+ ++++++. ..+|.. .... ....+.. |.+.|++++|+|++++|+++
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 357899999999 8887554 345555 2222 1223333 78899999999999999999
Q ss_pred eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCC
Q 015301 59 SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADG 138 (409)
Q Consensus 59 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (409)
+.||.|++|+. ++..... ...|...|.+++|+|++++|++++.|+.|++||+.+++....................
T Consensus 127 ~~dg~i~i~~~-~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 127 VENGELRLWNK-TGALLNV---LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp ETTSCEEEEET-TSCEEEE---ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred eCCCeEEEEeC-CCCeeee---ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 99999999994 4433333 3456779999999999999999999999999999887654333221111000000000
Q ss_pred CCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc
Q 015301 139 DEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI 218 (409)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 218 (409)
......+.+++|+|++ .+++++.++.|++||+.+++.+..+..|...|.+++|+ +++++|++++.||.|++||++
T Consensus 203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~--- 277 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLLSASDDGTLRIWHGG--- 277 (425)
T ss_dssp ---CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEECSS---
T ss_pred cCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECC---
Confidence 0111228889999886 58889999999999999999999999999999999999 789999999999999999975
Q ss_pred cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 219 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
.......+..|...|.+++|+|++ ++++++.|+.|++||+++ ..
T Consensus 278 -~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~----------------------------------~~ 321 (425)
T 1r5m_A 278 -NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ----------------------------------NT 321 (425)
T ss_dssp -SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT----------------------------------TE
T ss_pred -CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC----------------------------------Cc
Confidence 667777788899999999999999 999999999999999987 33
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc--------------------eEEEeccCCc--
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA--------------------QVAKLDFHNA-- 356 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--------------------~~~~~~~~~~-- 356 (409)
.+..+..|. ..+.+++|+|++++|++++.||.|++||+.+++ .+..+..|..
T Consensus 322 ~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 322 LLALSIVDG------VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp EEEEEECTT------CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred EeEecccCC------ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 444555544 234566899999999999999999999999988 8999999976
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
.|++++|+|++++|++++.||.|++|+++
T Consensus 396 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 396 YIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999999999986
No 23
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.4e-47 Score=334.85 Aligned_cols=304 Identities=14% Similarity=0.169 Sum_probs=228.7
Q ss_pred eeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w 112 (409)
...+|...|+|++|+| ++++||+|+.||+|+|||+.++.. .......+|...|++++|+| ++++|++++.||+|++|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 5668999999999999 567999999999999999987743 23345667888999999998 68999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+++........ ...+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|
T Consensus 193 d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 193 DFKGNILRVFAS-------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp ETTSCEEEEEEC-------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEE
T ss_pred eccCCceeEEec-------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeee
Confidence 997654322111 11223357899999999999999999999999986 4566778899999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSR 272 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 272 (409)
+|....+|++++.|+.|++||++.... ........+|...|++++|+|++++|++++.||.|++||+++........
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-- 335 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRG-KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-- 335 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC--
T ss_pred cCCCceEEEEecCcceeeEEecccccc-cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe--
Confidence 955556899999999999999873221 12233446799999999999999999999999999999998854332221
Q ss_pred ccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-----------e-CCCeEEEE
Q 015301 273 LRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-----------S-SDNSVYIY 340 (409)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-----------~-~dg~v~i~ 340 (409)
.|..........+...++|++.+++++ + .++.|++|
T Consensus 336 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw 383 (435)
T 4e54_B 336 --------------------------------PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF 383 (435)
T ss_dssp --------------------------------CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE
T ss_pred --------------------------------cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE
Confidence 111000000001112233334444333 3 34679999
Q ss_pred EccCCceEEEec-cCCcceeee-EEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 341 DLVSGAQVAKLD-FHNAPVRDC-CWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 341 d~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
|..+++.+..+. +|...|.++ +|+|++++|++|+ |+.|+||++.+++.
T Consensus 384 d~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 384 DGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred ECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 999999988874 678889888 6999999999876 88999999987653
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-46 Score=323.78 Aligned_cols=278 Identities=19% Similarity=0.310 Sum_probs=239.1
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
..+++|+|++.++++++. ..+|+.........+.+|.+.|++++|+|++++|++|+.|++|++||+.+...+..
T Consensus 111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~--- 187 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--- 187 (410)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC---
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE---
Confidence 568999999998888654 45666555566678999999999999999999999999999999999988755443
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|...|.+++|+|++++|++++.|+.|++||+.++...... .+|...|.+++|+|++.+|++|
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---------------TGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------------ECCSSCEEEEEECTTSSEEEEE
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------------eCCCccEEEEEECCCCCEEEEE
Confidence 4567779999999999999999999999999999887643221 1345579999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC-------------------CCcEEEEeeCCCeEEEecccccccCC
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE-------------------TGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
+.|+.|++||+.+++....+.+|...|.+++|+|. .+.+|++|+.|+.|++||++ .+
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~----~~ 328 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TG 328 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----TT
T ss_pred cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC----CC
Confidence 99999999999999999999999999999999942 16789999999999999975 77
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
..+..+.+|...|.+++|+|++++|++++.||.|++||+++ ...+.
T Consensus 329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~----------------------------------~~~~~ 374 (410)
T 1vyh_C 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----------------------------------KRCMK 374 (410)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT----------------------------------SCCCE
T ss_pred ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------------CceEE
Confidence 88888999999999999999999999999999999999977 34566
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+.+|.. .+.+++|+|++.+|++|+.||.|++|+++
T Consensus 375 ~~~~h~~------~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 375 TLNAHEH------FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCSS------CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcCCCC------cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 6677763 35677899999999999999999999863
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-45 Score=319.78 Aligned_cols=308 Identities=17% Similarity=0.173 Sum_probs=240.9
Q ss_pred eeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w 112 (409)
.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.++.... .....+|...|.+++|+| ++++|++++.|+.|++|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 678999999999999999 999999999999999999874443 334456788999999999 78999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
|+.+........ ...+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|
T Consensus 147 d~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 147 DFSGSVIQVFAK-------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp ETTSCEEEEEEC-------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred ECCCCceEEEec-------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence 998533211111 1133457999999999999999999999999999 57788889999999999999
Q ss_pred eCCCCc-EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 193 ADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 193 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
+ +++. +|++++.|+.|++||++...........+ +|...|.+++|+| ++++|++++.|+.|++||+++........
T Consensus 213 ~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 213 N-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp C-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred C-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 9 6666 99999999999999987432234555555 6999999999999 99999999999999999998855432221
Q ss_pred ccccccccccccccccccceeccccCcccee-eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLA-TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
....... .....+. .+... ......+++|++++ +|+.||.|++||+.+++.+.
T Consensus 291 ~~~~~~~-----------------~~~~~~~~~~~p~-------~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~ 344 (383)
T 3ei3_B 291 IHPHRQF-----------------QHLTPIKATWHPM-------YDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH 344 (383)
T ss_dssp ECCBCCC-----------------TTSCCCCCEECSS-------SSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE
T ss_pred ccccccc-----------------ccccceEEeccCC-------CCceEEEecCCccc--ccCCCCeEEEEecCCCceee
Confidence 1000000 0000000 00000 11223467788887 88899999999999999999
Q ss_pred Eecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 350 KLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 350 ~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+.+ |...+..++|+|++++|++++ ||.|++||+++
T Consensus 345 ~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 345 QLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9987 456777889999999999997 99999999875
No 26
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=309.40 Aligned_cols=277 Identities=21% Similarity=0.336 Sum_probs=232.2
Q ss_pred ceeeEEecC----ceeEeeccce---EEEEeeecC--CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGR----GRFSAADSCH---VLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~d----g~~~~~~~~~---~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
+.+++|+|+ +.++++++.+ .+|...... ....+.+|...|.+++|+|++.++++++.|++|++||+.++..
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~ 114 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ 114 (321)
T ss_dssp EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE
Confidence 578999985 4577775543 445443222 2246889999999999999999999999999999999999866
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
+.... .+...+.+++|+|++++|++++.+|.|++|++.+++...... .+...|.+++|+|++
T Consensus 115 ~~~~~---~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~---------------~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 115 IKSID---AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD---------------TRGKFILSIAYSPDG 176 (321)
T ss_dssp EEEEE---CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE---------------CSSSCEEEEEECTTS
T ss_pred EEEEe---CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec---------------CCCceEEEEEECCCC
Confidence 55433 344578899999999999999999999999998876432211 223369999999999
Q ss_pred CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
++|++++.|+.|++||+++++.+..+.+|..+|.+++|+ |++.+|++++.|+.|++||++ .......+.+|...|
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~~~v 251 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQ----HANLAGTLSGHASWV 251 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETT----TCCEEEEECCCSSCE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECC----CcceeEEEcCCCCce
Confidence 999999999999999999999999999999999999999 899999999999999999975 667788889999999
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
.+++|+|++++|++++.|+.|++||+++ ...+..+.+|. .
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~----------------------------------~~~~~~~~~h~------~ 291 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGT----------------------------------RTCVHTFFDHQ------D 291 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCCS------S
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCC----------------------------------CEEEEEEcCCC------C
Confidence 9999999999999999999999999987 45566666665 3
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.+++++|+|++++|++++.||.|++||..
T Consensus 292 ~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 292 QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 45677899999999999999999999963
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-45 Score=313.01 Aligned_cols=291 Identities=16% Similarity=0.215 Sum_probs=249.9
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
..+.+|.+.|++++|+|++++|++++.||.|++||+.++..+.. ...|...|.+++|+|++++|++++.||.|++||
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT---LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh---hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 47889999999999999999999999999999999998865544 345677999999999999999999999999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCCCe-----------ee
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANK-----------CS 177 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~-----------~~ 177 (409)
+.+++...... +...+.+++|+|+++++++++.+ +.|.+||+.... ..
T Consensus 103 ~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 103 VSNGQCVATWK----------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp TTTCCEEEEEE----------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred CCCCcEEEEee----------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 98876543322 22369999999999999999998 999999997653 33
Q ss_pred eEEcCCCC--CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcE
Q 015301 178 LRIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 178 ~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
..+..|.. .+.+++|+ +++++|++++.||.|++||++ ........+..|...|.+++|+|++++|++++.|+.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 242 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVS---NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNS 242 (369)
T ss_dssp EEEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETT---TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECC---CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceE
Confidence 44555666 99999999 799999999999999999975 1267778888899999999999999999999999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
++||+++. ..+..+... ..+..+.++|+++++++++.++
T Consensus 243 ~v~d~~~~----------------------------------~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 243 FLVDVSTL----------------------------------QVLKKYETD-------CPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEETTTC----------------------------------CEEEEEECS-------SCEEEEEECSSSSEEEEEECCC
T ss_pred EEEECCCC----------------------------------ceeeeecCC-------CCceeEEecCCCceEEEeecCC
Confidence 99999873 333333321 2234567899999999999988
Q ss_pred --------------eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 336 --------------SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 336 --------------~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++....
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998654
No 28
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-47 Score=332.91 Aligned_cols=346 Identities=12% Similarity=0.173 Sum_probs=251.4
Q ss_pred EEecCceeEeeccceEEEEeeecCCCcee-ecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC---Ceeeeeeeecc
Q 015301 8 NYSGRGRFSAADSCHVLSRYLPVNGPWKV-DGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDK---NWKIQKDIETK 82 (409)
Q Consensus 8 ~~s~dg~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~ 82 (409)
.|+|++..++.... |. ........+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........ .
T Consensus 34 ~f~~~~~~~~~~~~---w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~ 108 (437)
T 3gre_A 34 EFGPIQEIVRSPNM---GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT-Y 108 (437)
T ss_dssp GGCCCCCCCCCCCG---GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE-E
T ss_pred hcCCcccccccccc---cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee-c
Confidence 46788887776552 11 112222356 78999999999999 999999999999999999876 422211111 2
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcC---CCccccccceeceeeeeeeecCCCCcceeeEEEE--EcCCCCeE
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVG---SSARESLANVTEIHKGLDFSADGDEDEFGIFSVK--FSTDGQEL 157 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l 157 (409)
.|...|.+++|+|++++|++++.||.|++||+. +++........ ....+.+.+. ++...+.++. +++++.+|
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNF--GKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGG--SSCCCEEEEEEEECSSCEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCc--ccccCceEEEEEEcCCCCEE
Confidence 467799999999999999999999999999995 33322211111 1112222221 1344577777 66899999
Q ss_pred EEEEecCeEEEEECCCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccccce
Q 015301 158 VAAGSDNFIYVYDLQANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGI 234 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v 234 (409)
++++.|+.|++||+++++.+..+.. |...|++++|+ +++++|++|+.||.|++||++ .+..+..+. .|..+|
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v 260 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPI 260 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCce
Confidence 9999999999999999999999987 89999999999 889999999999999999976 566766665 788899
Q ss_pred eEEEEc----CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec--ccc
Q 015301 235 TFIDSR----RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG--HSV 308 (409)
Q Consensus 235 ~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 308 (409)
.+++|+ |++.+|++++.||.|++||+++............. .....+.+....+ .-..+.+ |.
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l------~~~~~~~~~~~- 329 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ----PSMEHFLPIEKGL------EELNFCGIRSL- 329 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC----CCGGGGSCBCSSG------GGCCCCCCCSG-
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC----Cccceeccccccc------ccceecccccC-
Confidence 999655 56789999999999999999876544332211000 0000111111000 0001222 22
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc-----------------------------------
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF----------------------------------- 353 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----------------------------------- 353 (409)
..+.+++|+ ++++|++|+.||.|++||+.+++.+..+.+
T Consensus 330 -----~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 330 -----NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp -----GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred -----CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 223455777 679999999999999999999887776665
Q ss_pred --CCcceeeeEEecC--cCeEEeecCCCeEEEEe
Q 015301 354 --HNAPVRDCCWHPI--YPMLISSSWDCNIVRWE 383 (409)
Q Consensus 354 --~~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~ 383 (409)
|...|++++|+++ +.+|++|+.||.|++|+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999995
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.5e-45 Score=309.29 Aligned_cols=282 Identities=13% Similarity=0.069 Sum_probs=222.3
Q ss_pred ceeeEEecCceeEeeccce-------EEEEeeec--C----CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 015301 4 GREVNYSGRGRFSAADSCH-------VLSRYLPV--N----GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVD 70 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-------~~~~~~~~--~----~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~ 70 (409)
..+++|||||+++++.+.. .++.+... . .......|...|++++|+|++ .|++|+.||+|+|||++
T Consensus 33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 33 LEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELD 111 (344)
T ss_dssp EEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEecc
Confidence 5689999999998876521 11111111 1 112334567889999999985 68899999999999999
Q ss_pred CCeeeeee-eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 71 KNWKIQKD-IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
+++..... ....+|...|++++|+|++++|++|+.|+.|++||+.+++..... .+|...|.+++
T Consensus 112 ~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~---------------~~h~~~V~~~~ 176 (344)
T 4gqb_B 112 ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY---------------RAHAAQVTCVA 176 (344)
T ss_dssp TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEE
T ss_pred CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------------cCcCCceEEEE
Confidence 88654432 345578889999999999999999999999999999887643221 24666899999
Q ss_pred EcCCCC-eEEEEEecCeEEEEECCCCeeeeEEc--CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee
Q 015301 150 FSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV 226 (409)
Q Consensus 150 ~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 226 (409)
|+|++. +|++++.|+.|++||+++++....+. .|...+.+++|+|.++++|++|+.||.|++||++ .++.+..
T Consensus 177 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~ 252 (344)
T 4gqb_B 177 ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----STSCVLS 252 (344)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----C--CCEE
T ss_pred ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC----CCcEEEE
Confidence 999875 67899999999999999998887763 4567899999997788899999999999999976 6788888
Q ss_pred eeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec
Q 015301 227 LMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 227 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
+.+|...|++++|+|++ ++|++++.|++|++||+++. .+..+.+
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-----------------------------------~~~~~~~ 297 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-----------------------------------ELFRSQA 297 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-----------------------------------EEEEECC
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-----------------------------------cEEEEcC
Confidence 99999999999999998 57999999999999998872 2334566
Q ss_pred ccceeeeeEEEEeeeecCCCC-EEEEEeCCCeEEEEEccCCc
Q 015301 306 HSVLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 306 ~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~v~i~d~~~~~ 346 (409)
|. ..+.+++|+|+++ +|++++.|++|++|++.+..
T Consensus 298 H~------~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 298 HR------DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CS------SCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CC------CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 65 3456778999886 57789999999999997654
No 30
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.8e-45 Score=337.01 Aligned_cols=290 Identities=22% Similarity=0.278 Sum_probs=236.3
Q ss_pred eeecCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeee--eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKI--QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
.+.+|.+.|++++|+|++ ++|+||+.|++|++|++...... .......+|...|.+++|+|++++|++|+.||.|++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 578999999999999875 79999999999999999764221 122345678889999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE---cCCCCCeE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI---PAHKSDVN 188 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~ 188 (409)
||+.++...... .+|...|.+++|+|++++|++++.|+.|++||.......... .+|...|.
T Consensus 457 wd~~~~~~~~~~---------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 457 WDLAAGVSTRRF---------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp EETTTTEEEEEE---------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred EECCCCcceeEE---------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 999887543221 145668999999999999999999999999998655433322 46889999
Q ss_pred EEEEeCCCC--cEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 189 TVCFADETG--HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 189 ~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
+++|+ +++ ..|++++.|+.|++||++ .......+.+|.+.|.+++|+|++++|++++.||.|++||+++.
T Consensus 522 ~~~~~-~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~--- 593 (694)
T 3dm0_A 522 CVRFS-PNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG--- 593 (694)
T ss_dssp EEEEC-SCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---
T ss_pred EEEEe-CCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Confidence 99999 544 689999999999999975 66777888999999999999999999999999999999999873
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+..+..+. .+.+++|+|++.+|++++ ++.|++||+.+++
T Consensus 594 -------------------------------~~~~~~~~~~-------~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 594 -------------------------------KKLYSLEANS-------VIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp -------------------------------EEEECCBCSS-------CEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred -------------------------------ceEEEecCCC-------cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 2233333222 234567899998888776 5569999999998
Q ss_pred eEEEeccCC-------------------cceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 347 QVAKLDFHN-------------------APVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 347 ~~~~~~~~~-------------------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.+..+..+. ..+++++|+|++++|++|+.||.|++|++..
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 887775332 1378899999999999999999999999853
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-44 Score=302.42 Aligned_cols=289 Identities=16% Similarity=0.211 Sum_probs=244.6
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
...+.+|.+.|++++| |++++|++++.||.|++||+.++...... ..|...|.+++|+|++++|++++.||.|++|
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV---YTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE---EECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe---ecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3578899999999999 99999999999999999999887554443 3456689999999999999999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
++............ ..|...|.+++| +++++++++.|+.|++|| .++....+..|...+.+++|
T Consensus 87 ~~~~~~~~~~~~~~------------~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~ 150 (313)
T 3odt_A 87 PLFATSGEDPLYTL------------IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV 150 (313)
T ss_dssp ETTCCTTSCC-CEE------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred EeeecCCCCcccch------------hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence 99775432221111 245567999999 677999999999999999 67788888899999999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 271 (409)
.|++++++++++.||.|++|| .......+.. |...+.+++|+|++. +++++.||.|++||+++
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d------~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~--------- 214 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQ------NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT--------- 214 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEE------TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT---------
T ss_pred ccCCCCEEEEEECCCCEEEEe------cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc---------
Confidence 966999999999999999999 3445555665 889999999999988 99999999999999987
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+..+..+.+|. ..+.+++|+|++ .|++++.||.|++||+.+++.+..+
T Consensus 215 -------------------------~~~~~~~~~~~------~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 215 -------------------------GDVLRTYEGHE------SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp -------------------------CCEEEEEECCS------SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred -------------------------hhhhhhhhcCC------ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 34455666665 234566899998 5889999999999999999999999
Q ss_pred ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
..|...|.+++|+|+++ +++++.||.|++|++.+....
T Consensus 263 ~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 263 TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999999999999998 667889999999999876543
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.4e-45 Score=314.86 Aligned_cols=299 Identities=13% Similarity=0.126 Sum_probs=243.3
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
.+..|.++|++++|+|++++|++++.|+.|++||+.++. .........|...|.+++|+|++++|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 456799999999999999999999999999999998874 1122234467779999999999999999999999999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee---eeE-EcCCCCCeEEE
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC---SLR-IPAHKSDVNTV 190 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~-~~~~~~~v~~~ 190 (409)
.+++....... ..|...|.+++|+|++++|++++.|+.|++||+..++. ... ...|...|.++
T Consensus 82 ~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 82 KGRTWKPTLVI-------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp ETTEEEEEEEC-------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred CCCeeeeeEEe-------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence 77653222111 13455799999999999999999999999999988763 233 36789999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEeccccc--------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCF--------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
+|+ +++++|++++.||.|++||++.. ...+.....+..|...|.+++|+|++++|++++.||.|+
T Consensus 149 ~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 149 DWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred EEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 999 78999999999999999996411 124566777778999999999999999999999999999
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 336 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 336 (409)
+||+++ ...+..+..|. ..+.+++|+|++++|++| .|+.
T Consensus 228 i~d~~~----------------------------------~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~-~d~~ 266 (372)
T 1k8k_C 228 LADADK----------------------------------KMAVATLASET------LPLLAVTFITESSLVAAG-HDCF 266 (372)
T ss_dssp EEEGGG----------------------------------TTEEEEEECSS------CCEEEEEEEETTEEEEEE-TTSS
T ss_pred EEECCC----------------------------------CceeEEEccCC------CCeEEEEEecCCCEEEEE-eCCe
Confidence 999987 34455555554 234566788899988888 8999
Q ss_pred EEEEEccC--Cce--------------------------------E------EEe-ccCCcceeeeEEe-cCc---CeEE
Q 015301 337 VYIYDLVS--GAQ--------------------------------V------AKL-DFHNAPVRDCCWH-PIY---PMLI 371 (409)
Q Consensus 337 v~i~d~~~--~~~--------------------------------~------~~~-~~~~~~v~~~~~s-~~~---~~l~ 371 (409)
|++|++.+ ++. . ..+ .+|..+|++++|+ +++ ++|+
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~ 346 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 346 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence 99999987 421 0 233 4899999999976 666 8999
Q ss_pred eecCCCeEEEEecCCCcc
Q 015301 372 SSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 372 s~~~dg~i~iw~~~~~~~ 389 (409)
+++.||.|++|++.+.++
T Consensus 347 s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 347 TTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEETTSEEEEEEHHHHHH
T ss_pred EecCCCceEEEEecChhH
Confidence 999999999999977544
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.2e-45 Score=316.67 Aligned_cols=293 Identities=13% Similarity=0.128 Sum_probs=243.1
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe------eeeeeeecccccceEEEEEeCCC----C---cEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW------KIQKDIETKALRWTITDTSLSPD----Q---RFL 100 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~----~---~~l 100 (409)
..+.+|.+.|++++|+| ++|++++.||.|++|++.++. .... ...|...|.+++|+|+ + ++|
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS---HFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE---EECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE---EecCCCcEEEEEEecccccCCccccEE
Confidence 46789999999999999 899999999999999998875 2333 3467779999999999 9 999
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCc-----ceeeEEEEEc----CCCCe-EEEEEecCeEEEEE
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED-----EFGIFSVKFS----TDGQE-LVAAGSDNFIYVYD 170 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~v~d 170 (409)
++++.||.|++|++.+++.......... ..| ...|.+++|+ |++++ |++++.||.|++||
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKL----------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEE----------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccccccceee----------cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 9999999999999987664111000000 122 3579999999 99999 99999999999999
Q ss_pred CCC------Ceeee-----EE-------cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec---
Q 015301 171 LQA------NKCSL-----RI-------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--- 229 (409)
Q Consensus 171 ~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 229 (409)
+.+ ++.+. .+ ..|...|.+++|+ +++ +|++++.||.|++||++ .......+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYNFESQHS 228 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEEEECCC-
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECC----CCceeEEEecccc
Confidence 998 66665 66 4589999999999 777 99999999999999976 6777788888
Q ss_pred c---ccceeEEEEcCCCCeEEEEeCC---CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 230 H---LEGITFIDSRRDGRYFISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 230 ~---~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
| ...|.+++|+|++++|++++.| |.|++||+++.. .+..+
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----------------------------------~~~~~ 274 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----------------------------------RIGSL 274 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----------------------------------EEEEE
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----------------------------------cccee
Confidence 8 9999999999999999999999 999999998732 23333
Q ss_pred ec-------------ccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec------cC----------
Q 015301 304 KG-------------HSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD------FH---------- 354 (409)
Q Consensus 304 ~~-------------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~------~~---------- 354 (409)
.+ |. ..+.+++|+|++++|++++.||.|++||+.+++.+..+. +|
T Consensus 275 ~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHS------SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348 (397)
T ss_dssp CBC--------CCBSBS------SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred ccCcccccccccccccC------CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccc
Confidence 33 33 335567899999999999999999999999999999998 88
Q ss_pred -----CcceeeeEEecCc----------CeEEeecCCCeEEEEecCCC
Q 015301 355 -----NAPVRDCCWHPIY----------PMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 355 -----~~~v~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~ 387 (409)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 349 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 349 GDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999765
No 34
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-44 Score=300.93 Aligned_cols=250 Identities=20% Similarity=0.278 Sum_probs=212.2
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
..+|...|.+++|+|++++|++++.||.|++||+.++....... .|..+|.+++|+|++++|++|
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ---------------VTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---------------CCSSCEEEEEEEGGGTEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee---------------ccCCcEEEEEEeCCCCEEEEE
Confidence 45677799999999999999999999999999998875432211 234479999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 161 GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
+.|+.|++||+.+++.+..+.+|...|.+++|+ |++.+|++|+.|++|++||++ ........+.+|...|.+++|+
T Consensus 74 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~---~~~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGG---GTTEEEEEECCCCSCEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECC---CCcchhhhhcccCCcEEEEEEC
Confidence 999999999999999999999999999999999 889999999999999999975 2234556788999999999999
Q ss_pred C-CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEe
Q 015301 241 R-DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFS 318 (409)
Q Consensus 241 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 318 (409)
| ++.+|++++.|+.|++||++.... ...+. ++... +..
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~----------------------------------~~~~~~~~~~~------v~~ 189 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTP----------------------------------NFTLTTGQERG------VNY 189 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSC----------------------------------SEEEECCCTTC------EEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCc----------------------------------cceeccCCcCc------EEE
Confidence 9 678999999999999999976321 11111 22111 112
Q ss_pred eeec--CCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 319 PEYS--TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 319 ~~~s--~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..++ +++.+|++|+.|+.|++||+++++++.++.+|...|.+++|+|++++|++++.||.|++||+.+.+.
T Consensus 190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 2344 4788999999999999999999999999999999999999999999999999999999999987653
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.5e-45 Score=310.72 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=217.1
Q ss_pred cceeeEEecCceeEeeccc------eE-EEEee--ecCC----CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 015301 3 VGREVNYSGRGRFSAADSC------HV-LSRYL--PVNG----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNV 69 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~------~~-~~~~~--~~~~----~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~ 69 (409)
++++++|||||+++++++. .. ++.+. .... .....+|...|++++|+|+++ +++++.||+|+|||+
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~ 122 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEI 122 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeec
Confidence 3679999999999998764 11 22211 1111 124568999999999999986 556778999999999
Q ss_pred CCCeeeee-eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEE
Q 015301 70 DKNWKIQK-DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSV 148 (409)
Q Consensus 70 ~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (409)
.+++.... .....+|...|.+++|+|++++|++++.|+.|++||+.+++..... ..|...|.++
T Consensus 123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~---------------~~h~~~v~~v 187 (357)
T 4g56_B 123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY---------------NAHSSEVNCV 187 (357)
T ss_dssp ------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEE
T ss_pred cccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------------cCCCCCEEEE
Confidence 88754332 2334568889999999999999999999999999999887643222 2455679999
Q ss_pred EEcCCCC-eEEEEEecCeEEEEECCCCeeeeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee
Q 015301 149 KFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG 225 (409)
Q Consensus 149 ~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 225 (409)
+|+|++. ++++++.|+.|++||+++++....+ ..|...+.+++|+|.++.+|++|+.|+.|++||++ .++...
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~----~~~~~~ 263 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK----NPDSAQ 263 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS----CGGGCE
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC----CCcEeE
Confidence 9999875 7889999999999999998877654 45778899999996667899999999999999976 667788
Q ss_pred eeeccccceeEEEEcCCC-CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 226 VLMGHLEGITFIDSRRDG-RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
.+.+|...|.+++|+|++ ++|++++.|++|++||+++. +.+. ..
T Consensus 264 ~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~----------------------------------~~~~-~~ 308 (357)
T 4g56_B 264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS----------------------------------EVFR-DL 308 (357)
T ss_dssp EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC----------------------------------EEEE-EC
T ss_pred EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC----------------------------------cEeE-EC
Confidence 889999999999999987 57899999999999999872 2222 23
Q ss_pred cccceeeeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCCce
Q 015301 305 GHSVLRTLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
+|. ..+.+++|+| ++++|++++.||+|++|++.+...
T Consensus 309 ~H~------~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 309 SHR------DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp CCS------SCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCC------CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 454 2355678998 799999999999999999976533
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-44 Score=305.14 Aligned_cols=303 Identities=14% Similarity=0.141 Sum_probs=225.5
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCC--C-ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNG--P-WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~--~-~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
..+++|||||+++++++.+ .+|....... . ....+|...|.+++|+|+|++||+|+.|++|++|++..+. ...
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-~~~ 97 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-FEC 97 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--EEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-eEE
Confidence 4689999999999886644 4444332211 1 1236899999999999999999999999999999998763 223
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (409)
.....+|...|.+++|+|++++|++++.|+.|++||+.++........ ...|...|.+++|+|++++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV------------LNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE------------ECCCCSCEEEEEECSSSSCE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE------------ecCcCCCeEEEEECCCCCEE
Confidence 334567888999999999999999999999999999987543211111 12455679999999999999
Q ss_pred EEEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC-----------Ccee
Q 015301 158 VAAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----------GRAN 224 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~ 224 (409)
++++.|+.|++||..+++ ....+.+|...|.+++|+ |++++|++++.|++|++||.+..... ..++
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 999999999999998875 346788999999999999 89999999999999999996421111 1122
Q ss_pred eeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 225 GVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 225 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
..+.+ |...|.+++|+|++..|++++.|+.|++|+............ .......
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-------------------------~~~~~~~ 299 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF-------------------------SLTAHLH 299 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE-------------------------EEEEEET
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE-------------------------EEEeeec
Confidence 33333 788999999999999999999999999999875321110000 0001112
Q ss_pred ecccceeeeeEEEEeeeecCCC-CEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQ-KYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
.+|. ..+.+++|+|++ .+||+|+.||.|++|++.+++.....
T Consensus 300 ~~h~------~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 300 QAHS------QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TSSS------SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred cccc------CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 3443 345667899987 59999999999999999988766544
No 37
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-44 Score=305.60 Aligned_cols=277 Identities=18% Similarity=0.292 Sum_probs=229.7
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee-eeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK-IQKDI 79 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~ 79 (409)
+.+++|||||+++++++.+ .+|..........+..|...|.+++|+|++++|++|+.|+.|++|++.+... .....
T Consensus 58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 137 (340)
T 1got_B 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEE
Confidence 5689999999998886654 4444444444557789999999999999999999999999999999987632 22233
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
...+|...|.++.|++++. +++++.|+.|++||+.+++..... .+|...|.+++|+|++++|++
T Consensus 138 ~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 138 ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF---------------TGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECTTSSEEEE
T ss_pred EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE---------------cCCCCceEEEEECCCCCEEEE
Confidence 4556778999999998875 889999999999999887643221 245668999999999999999
Q ss_pred EEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~ 237 (409)
|+.|+.|++||+++++.+..+.+|...|.+++|+ |++++|++++.||.|++||++ .......+. .+...|.++
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSCEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECC----CCcEEEEEccCCcccceEEE
Confidence 9999999999999999999999999999999999 899999999999999999976 444444433 233579999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+|+|++++|++++.||.|++||+.+ ...+..+.+|.. .+.
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~----------------------------------~~~~~~~~~h~~------~v~ 316 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALK----------------------------------ADRAGVLAGHDN------RVS 316 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT----------------------------------CCEEEEEECCSS------CEE
T ss_pred EECCCCCEEEEECCCCeEEEEEccc----------------------------------CcEeeEeecCCC------cEE
Confidence 9999999999999999999999877 344566777763 345
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEE
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
+++|+|++.+|++|+.||.|+|||
T Consensus 317 ~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 317 CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcCCCCEEEEEcCCccEEecC
Confidence 678999999999999999999997
No 38
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.6e-45 Score=312.64 Aligned_cols=303 Identities=17% Similarity=0.223 Sum_probs=239.2
Q ss_pred eeecCCCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeeeeeeeec--ccccceEEEEEeCCC----CcEEEEEe
Q 015301 35 KVDGMNSRVYTSQFSND----GSFFVAASQESNIKVYNVDKNWKIQKDIET--KALRWTITDTSLSPD----QRFLVYAS 104 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~----~~~l~~~~ 104 (409)
...+|.++|++++|+|+ ...+++++.++.|++|++.++..+...... ..|...|.+++|+|+ +++|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 455666666779999999977555443322 235678999999998 67999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEE---
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI--- 180 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~--- 180 (409)
.||.|++||+.+++...... +|..+|.+++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYV---------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEE---------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCEEEEEEchhceEeeeec---------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 99999999998775432211 3455799999999 9999999999999999999999998888
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee----------------------------eeecccc
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG----------------------------VLMGHLE 232 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~ 232 (409)
..|...|.+++|+ +++++|++++.||.|++||++. ..... ....|..
T Consensus 158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINS----KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCS----HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCC----CccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 6899999999999 7999999999999999999862 22222 2223889
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
.|.+++|+ ++++++++.|+.|++||+++........... ......+..+..|.
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~----- 285 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS--------------------ESNVTILGRFDYSQ----- 285 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT--------------------CCCEEEEEEEECSS-----
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC--------------------CcchheeccccccC-----
Confidence 99999998 7799999999999999998754322111000 00012234444444
Q ss_pred eEEEEeeeecCC--CCEEEEEeCCCeEEEEEccCCc----eEEEeccC--CcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 313 IRCYFSPEYSTA--QKYIYTGSSDNSVYIYDLVSGA----QVAKLDFH--NAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 313 ~~~~~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..+..++|+|+ +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+
T Consensus 286 -~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 286 -CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp -CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 23455678888 9999999999999999999875 44577777 789999999999999999999999999998
Q ss_pred C
Q 015301 385 P 385 (409)
Q Consensus 385 ~ 385 (409)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
No 39
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-43 Score=325.79 Aligned_cols=362 Identities=16% Similarity=0.163 Sum_probs=271.5
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeec----CCCceeecCCCC-eEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe-
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPV----NGPWKVDGMNSR-VYTSQFSN--DGSFFVAASQESNIKVYNVDKNW- 73 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~----~~~~~l~~h~~~-v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~- 73 (409)
..+++|||||++++..... .++..... .....+.+|.+. |++++|+| ++++||+++.||.|++||+.++.
T Consensus 21 v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence 5689999999987765433 44444433 455688999999 99999999 99999999999999999997540
Q ss_pred ----eeeeeeecccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 74 ----KIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 74 ----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
..........|...|.+++|+|++++|++++.+ +.|++||.. +.... ...|...|
T Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~~~~~---------------~~~~~~~v 163 (615)
T 1pgu_A 101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLGE---------------VSGHSQRI 163 (615)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEEEE---------------CCSCSSCE
T ss_pred cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--Cccee---------------eecCCccE
Confidence 111222344567799999999999999999987 789999832 21111 12456689
Q ss_pred EEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeEEcCCCC---CeEEEEEeCCC-CcEEEEeeCCCeEEEecccccccC
Q 015301 146 FSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLRIPAHKS---DVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 146 ~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
.+++|+|+++ .+++++.|+.|++||+.+++.+..+..|.. .|.+++|+ ++ +++|++++.||.|++||++ .
T Consensus 164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~----~ 238 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK----S 238 (615)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT----T
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC----C
Confidence 9999999998 799999999999999999999999999999 99999999 67 9999999999999999975 6
Q ss_pred Cceeeee-e---ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc-------cccc------------
Q 015301 221 GRANGVL-M---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL-------RDYD------------ 277 (409)
Q Consensus 221 ~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~------------ 277 (409)
++....+ . .|...|.+++|+ ++++|++++.|+.|++||+++........... ....
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 317 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 317 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC
Confidence 6777777 5 899999999999 99999999999999999998755433221110 0000
Q ss_pred ------cccc-------------------------------------------------cccccccceecccc-------
Q 015301 278 ------WDYR-------------------------------------------------WMEYPSYARRLKHP------- 295 (409)
Q Consensus 278 ------~~~~-------------------------------------------------~~~~~~~~~~~~~~------- 295 (409)
|+.. .+.+......+...
T Consensus 318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 318 DGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKV 397 (615)
T ss_dssp TSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEE
T ss_pred CCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEE
Confidence 0000 00000000000000
Q ss_pred --------------------------------------C-----------------------------ccceeeeeccc-
Q 015301 296 --------------------------------------H-----------------------------DQSLATYKGHS- 307 (409)
Q Consensus 296 --------------------------------------~-----------------------------~~~~~~~~~~~- 307 (409)
. ...+..+....
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 398 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc
Confidence 0 11111111100
Q ss_pred -----ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc-CCcceeeeEEec----------CcCeEE
Q 015301 308 -----VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF-HNAPVRDCCWHP----------IYPMLI 371 (409)
Q Consensus 308 -----~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~v~~~~~s~----------~~~~l~ 371 (409)
........+.+++|+|++++|++++.||.|++||+.+++.+..+.+ |...|++++|+| ++++|+
T Consensus 478 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~ 557 (615)
T 1pgu_A 478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 557 (615)
T ss_dssp EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEE
Confidence 0001122356778999999999999999999999999999999988 999999999999 999999
Q ss_pred eecCCCeEEEEecCCCc
Q 015301 372 SSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 372 s~~~dg~i~iw~~~~~~ 388 (409)
+++.||.|++||+....
T Consensus 558 ~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 558 TGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp EEETTSCEEEEESSCTT
T ss_pred EEcCCCcEEEEECCCCc
Confidence 99999999999998763
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-44 Score=314.14 Aligned_cols=319 Identities=12% Similarity=0.120 Sum_probs=248.8
Q ss_pred eeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..++|||||++++++.. ..++..........+.+| ..+....|+|++++|++++.||.|++||+.++.... ..
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~ 135 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---ID 135 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE---ET
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee---ec
Confidence 36899999998887553 344544444444555666 455566889999999999999999999999774433 24
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
..|...|.+++|+|++++|++++.|+.|++||+.+++..... .+|...|.+++|+|++++|++++
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~l~s~~ 200 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL---------------IGHRATVTDIAIIDRGRNVLSAS 200 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE---------------ECCSSCEEEEEEETTTTEEEEEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE---------------cCCCCcEEEEEEcCCCCEEEEEc
Confidence 567789999999999999999999999999999877643221 13556899999999999999999
Q ss_pred ecCeEEEEECCCCeeeeEEcC---CCCCeEEEE---------------------EeCCCCcEEEEeeCCCeEEEeccccc
Q 015301 162 SDNFIYVYDLQANKCSLRIPA---HKSDVNTVC---------------------FADETGHLIFSGSDDSLCKVWDRRCF 217 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~---~~~~v~~~~---------------------~~~~~~~~l~~~~~dg~i~iwd~~~~ 217 (409)
.|+.|++||+++++.+..+.. |...+.+++ |+ +++++|++++.||.|++||++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~-- 277 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVF-- 277 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETT--
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECC--
Confidence 999999999999998888864 444455554 45 688999999999999999986
Q ss_pred ccCCceeeee-eccccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecccc
Q 015301 218 ISKGRANGVL-MGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHP 295 (409)
Q Consensus 218 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (409)
.......+ ..|...|.+++|+|++. +|++++.||.|++||+++..
T Consensus 278 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~------------------------------- 324 (420)
T 3vl1_A 278 --SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE------------------------------- 324 (420)
T ss_dssp --TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------------------------
T ss_pred --CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-------------------------------
Confidence 44444443 45888999999999999 99999999999999998732
Q ss_pred CccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC---------ceEEEeccCCcceeeeEEecC
Q 015301 296 HDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG---------AQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~s~~ 366 (409)
..+..+..+... .+... +.+++++|++++.||.|++|++... .....+..|...|.+++|+|+
T Consensus 325 --~~~~~~~~~~~~-----~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (420)
T 3vl1_A 325 --CPVGEFLINEGT-----PINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396 (420)
T ss_dssp --SCSEEEEESTTS-----CEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred --CchhhhhccCCC-----CceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence 223444443211 11222 3346889999999999999998773 223345678899999999999
Q ss_pred cC---eEEeecCCCeEEEEecCC
Q 015301 367 YP---MLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 367 ~~---~l~s~~~dg~i~iw~~~~ 386 (409)
++ .|++++.+|.+.+|++++
T Consensus 397 ~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 397 DESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCcceEEEEcCCceEEEEeccC
Confidence 99 777778899999999875
No 41
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-44 Score=308.24 Aligned_cols=288 Identities=20% Similarity=0.278 Sum_probs=224.7
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecCCCceeecC------------------CCCeEEEEECCCCCEEEEEeCCCc
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVNGPWKVDGM------------------NSRVYTSQFSNDGSFFVAASQESN 63 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~~~~~l~~h------------------~~~v~~~~~s~~~~~l~t~~~d~~ 63 (409)
..+++|||||++++++... .++..........+.+| ...|++++|+|+|++||+|+.|++
T Consensus 67 V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 4689999999999886533 22322222222233333 235999999999999999999999
Q ss_pred EEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcce
Q 015301 64 IKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 64 i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
|++||++++..... ..+|...|.+++|+|++++|++++.|+.|++||+.+++...... +..
T Consensus 147 i~iwd~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----------------~~~ 207 (393)
T 1erj_A 147 IRIWDIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----------------IED 207 (393)
T ss_dssp EEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CSS
T ss_pred EEEEECCCCcEEEE---EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE----------------cCC
Confidence 99999998855443 45677799999999999999999999999999998876532221 122
Q ss_pred eeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEE-------cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 144 GIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI-------PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 144 ~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+.+++|+| ++++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+ +++.+|++++.||.|++||++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECC
Confidence 589999999 8999999999999999999999877766 5799999999999 899999999999999999986
Q ss_pred cccc--------CCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 216 CFIS--------KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 216 ~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
.... .......+.+|...|.+++|+|++.+|++++.|+.|++||+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~------------------------- 341 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------------------------- 341 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT-------------------------
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------------
Confidence 3211 1334566788999999999999999999999999999999987
Q ss_pred cceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
+..+..+.+|..............++|++++|++|+.||.|+||++...
T Consensus 342 ---------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 342 ---------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ---------CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ---------CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 4556677777643332222112235568999999999999999998654
No 42
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.6e-44 Score=306.74 Aligned_cols=296 Identities=13% Similarity=0.188 Sum_probs=234.1
Q ss_pred eeecCCCCeEEEEECCCCCEE-EEEeC---CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC---CcEEEEEecCC
Q 015301 35 KVDGMNSRVYTSQFSNDGSFF-VAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICA 107 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l-~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg 107 (409)
.+.+|.+.|++++|+|+++.+ ++++. |+.|++|++.++...... ..+|...|.+++|+|+ +++|++++.||
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE--EEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee--eecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 557899999999999999655 56655 899999999987543322 2246678999999998 69999999999
Q ss_pred EEEEEEcCCCc-cccccceeceeeeeeeecCCCCcceeeEEEE------EcCCCCeEEEEEecCeEEEEECCCCe-eeeE
Q 015301 108 IVNIVDVGSSA-RESLANVTEIHKGLDFSADGDEDEFGIFSVK------FSTDGQELVAAGSDNFIYVYDLQANK-CSLR 179 (409)
Q Consensus 108 ~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~ 179 (409)
.|++||+.+++ ..... .+|...|.+++ |+|++++|++++.|+.|++||+.+++ .+..
T Consensus 91 ~i~iwd~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV---------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CEEEECTTSCSSCSEEE---------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred eEEEEeCCCCCccEEEE---------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 99999998775 21111 13555799995 46899999999999999999999887 6777
Q ss_pred EcCCCC----CeEEEE----EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC---CCCeEEE
Q 015301 180 IPAHKS----DVNTVC----FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR---DGRYFIS 248 (409)
Q Consensus 180 ~~~~~~----~v~~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~ 248 (409)
+..|.. .+.+++ |+ +++++|++++.||.|++||++ .... .....|...|.+++|+| ++.+|++
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYN-QEERVVCAGYDNGDIKLFDLR----NMAL-RWETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETT----TTEE-EEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred ccccCCCCCCceEEEEEEeccC-CCCCEEEEEccCCeEEEEECc----cCce-eeecCCCCceEEEEcCCCCCCCCEEEE
Confidence 765554 899998 55 789999999999999999975 4443 44467889999999999 9999999
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC-E
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-Y 327 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 327 (409)
++.||.|++||+++....... ....+.+|. ..+.+++|+|+++ +
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~~-----------------------------~~~~~~~~~------~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKGF-----------------------------ASVSEKAHK------STVWQVRHLPQNREL 274 (357)
T ss_dssp EESTTEEEEEEEEEEETTTEE-----------------------------EEEEEECCS------SCEEEEEEETTEEEE
T ss_pred ECCCCeEEEEeCcCCCcccce-----------------------------eeeccCCCc------CCEEEEEECCCCCcE
Confidence 999999999999873221110 011122443 3455678999998 8
Q ss_pred EEEEeCCCeEEEEEccCC-------------------ceEEEeccCCcceeeeEEecCcCeEE-eecCCCeEEEEecCCC
Q 015301 328 IYTGSSDNSVYIYDLVSG-------------------AQVAKLDFHNAPVRDCCWHPIYPMLI-SSSWDCNIVRWEIPGI 387 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~~~ 387 (409)
|++++.||.|++||+.++ +.+..+.+|...|++++|+|++++|+ +++.||.|++||+.+.
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999999999854 46778889999999999999999888 8999999999999865
Q ss_pred c
Q 015301 388 G 388 (409)
Q Consensus 388 ~ 388 (409)
.
T Consensus 355 ~ 355 (357)
T 3i2n_A 355 N 355 (357)
T ss_dssp -
T ss_pred c
Confidence 4
No 43
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=308.70 Aligned_cols=314 Identities=16% Similarity=0.249 Sum_probs=242.1
Q ss_pred EeeecCCCceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeee----------cccccceEEEEEeC
Q 015301 26 RYLPVNGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIE----------TKALRWTITDTSLS 94 (409)
Q Consensus 26 ~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~----------~~~~~~~v~~~~~s 94 (409)
.+........+.+|.+.|++++|+| ++++||+|+.||.|++||+.++........ ...|...|.+++|+
T Consensus 29 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 108 (408)
T 4a11_B 29 GLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY 108 (408)
T ss_dssp TEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC
T ss_pred ccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc
Confidence 3334455567889999999999999 999999999999999999998744333221 12477899999999
Q ss_pred C-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEecCeEEEEE
Q 015301 95 P-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSDNFIYVYD 170 (409)
Q Consensus 95 ~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d 170 (409)
| ++.+|++++.||.|++||+.+++....... ...+.++.|++. +.++++++.++.|++||
T Consensus 109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF----------------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp TTCTTCEEEEETTSEEEEEETTTTEEEEEEEC----------------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred cCCCcEEEEEeCCCeEEEeeCCCCccceeccC----------------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 9 788999999999999999998765433321 225888999884 45999999999999999
Q ss_pred CCCCeeeeEEcCCCCCeEEEEEeCCCCc-EEEEeeCCCeEEEeccccccc------------CCceeeeeeccccceeEE
Q 015301 171 LQANKCSLRIPAHKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFIS------------KGRANGVLMGHLEGITFI 237 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~v~~~ 237 (409)
+.+++.+..+..|...|.+++|+ +++. +|++++.||.|++||++.... ..........|...|.++
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcceeeeecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99999999999999999999999 5555 799999999999999863210 011112225788999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+|+|++++|++++.||.|++||+++......... +..........+
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~ 297 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG----------------------------------KVCNNSKKGLKF 297 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----------------------------------CCCCCCSSCCCC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccc----------------------------------ccccccccccee
Confidence 9999999999999999999999988543221110 000000000011
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
... ...+..+++++.++.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++|++...+..+
T Consensus 298 ~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 298 TVS-CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEC-CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EEe-cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 111 1234567777889999999999999999999999999999999999999999999999999998876543
No 44
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-44 Score=307.63 Aligned_cols=299 Identities=13% Similarity=0.097 Sum_probs=222.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC-------cEEEEEcCCCeee-------eeeeecccccceEEEEEeCCCCcEEEEE--
Q 015301 40 NSRVYTSQFSNDGSFFVAASQES-------NIKVYNVDKNWKI-------QKDIETKALRWTITDTSLSPDQRFLVYA-- 103 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~-------~i~vw~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~-- 103 (409)
.-||+|++|+|||++|++|+.+. .|++|+++..... .....+..|...|.+++++ ++.++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 35899999999999999997543 5999998765321 1223445666677777764 4566655
Q ss_pred ---------ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE--ecCeEEEEECC
Q 015301 104 ---------SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDLQ 172 (409)
Q Consensus 104 ---------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~ 172 (409)
+.|+.+++|++........... ...+ .....+...+.+++|+|||+++++++ .|+.|++||++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-----SVDF-DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-----EECS-SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEee-----eece-eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence 3577899999876543211110 0000 01112334588999999999987665 58999999999
Q ss_pred CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce--eeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 173 ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA--NGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
+++.+..+. |...|.+++|+ |+++++++++.++.+.+|+. .+.. ......|...|.+++|+|+++++++++
T Consensus 166 ~~~~~~~~~-~~~~V~~v~fs-pdg~~l~s~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 166 DLTEKFEIE-TRGEVKDLHFS-TDGKVVAYITGSSLEVISTV-----TGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp TTEEEEEEE-CSSCCCEEEEC-TTSSEEEEECSSCEEEEETT-----TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred CCcEEEEeC-CCCceEEEEEc-cCCceEEeccceeEEEEEec-----cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 999988886 77889999999 89999999986665544443 3332 234566888999999999999999999
Q ss_pred CCC----cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 251 KDQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 251 ~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
.|+ .+++|++....... .....+.+|. ..+.+++|+|+|+
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~------~~V~~~~~Spdg~ 282 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSV------------------------------LRSKQVTNRF------KGITSMDVDMKGE 282 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEE------------------------------EEEEEEESSC------SCEEEEEECTTSC
T ss_pred cCCcceeEEeecccccceecc------------------------------eeeeeecCCC------CCeEeEEECCCCC
Confidence 887 68888876522110 1122333443 3356778999999
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEe-ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 327 YIYTGSSDNSVYIYDLVSGAQVAKL-DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+||+|+.|+.|+|||+.+++++.++ ++|..+|++++|+||+++|+|+|.|++|+||+++....
T Consensus 283 ~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 9999999999999999999999875 78999999999999999999999999999999976443
No 45
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-43 Score=333.59 Aligned_cols=351 Identities=9% Similarity=0.091 Sum_probs=243.2
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCc--eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPW--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.+.+++|||||+++++++.+....++...... ....|..+|.+++|+| |++|++++.|++|++||+.+++.+....
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 36799999999999987755433333333222 2235889999999999 8899999999999999999886655432
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc------------cceeceeeeeeeecC-----------
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL------------ANVTEIHKGLDFSAD----------- 137 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~------------~~~~~~~~~~~~~~~----------- 137 (409)
|...|++++|+|++++|++|+.||.|++||+.+++.... .........+.|.+.
T Consensus 97 ---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 97 ---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp ---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred ---CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 445899999999999999999999999999988764210 000001111122211
Q ss_pred ---------------------------------CCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE--E--
Q 015301 138 ---------------------------------GDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR--I-- 180 (409)
Q Consensus 138 ---------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~-- 180 (409)
...|...|.+++|+|+|++|++++.|+.|++||+++++++.. +
T Consensus 174 g~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 174 VTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp CEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred CcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 012346799999999999999999999999999999887653 2
Q ss_pred -cC-------------CCCCeEEEEEeC---CC-CcEEEEeeCC-----CeEEEecccc---------------------
Q 015301 181 -PA-------------HKSDVNTVCFAD---ET-GHLIFSGSDD-----SLCKVWDRRC--------------------- 216 (409)
Q Consensus 181 -~~-------------~~~~v~~~~~~~---~~-~~~l~~~~~d-----g~i~iwd~~~--------------------- 216 (409)
.. |...|.+++|++ |+ +.+|++|+.| ..+.+|++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 333 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ 333 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence 11 345799999963 22 2456666544 2455555210
Q ss_pred ---c-------------------------------------------ccCCcee--------------------------
Q 015301 217 ---F-------------------------------------------ISKGRAN-------------------------- 224 (409)
Q Consensus 217 ---~-------------------------------------------~~~~~~~-------------------------- 224 (409)
. ...+...
T Consensus 334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~ 413 (902)
T 2oaj_A 334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP 413 (902)
T ss_dssp EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE
T ss_pred eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcC
Confidence 0 0000000
Q ss_pred ---------------eeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 225 ---------------GVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 225 ---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
..+.+|...+.+++|+|++++|++++.|++|++||+......... .+..+
T Consensus 414 ~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~-----~~~~~---------- 478 (902)
T 2oaj_A 414 NKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNA-----SFEVN---------- 478 (902)
T ss_dssp HHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTB-----CEEEE----------
T ss_pred HHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCc-----eEEee----------
Confidence 001223333444556789999999999999999999874211000 00000
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc-----------------------
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA----------------------- 346 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~----------------------- 346 (409)
+ .+.+ -.+|. ..+.+++|+|++++||+|+.||+|+|||+.+++
T Consensus 479 --l----~~~~--~~~h~------~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 479 --L----SRTL--NKAKE------LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp --H----HHHT--TCSSS------CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred --c----hhhc--CCCCC------CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 0 0000 01332 346678999999999999999999999998762
Q ss_pred ----------------------eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 347 ----------------------QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 347 ----------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
++..+.+|.+.|++++||||| +||+|+.|++|++||+.+..
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA 607 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe
Confidence 467888999999999999999 99999999999999987643
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.6e-44 Score=352.82 Aligned_cols=372 Identities=17% Similarity=0.188 Sum_probs=287.2
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
..+++|||||+++++++. ..+|+.........+.+|...|.+++|+| ++.++++|+.|+.|++||+.++.....
T Consensus 660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~- 738 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT- 738 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE-
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe-
Confidence 578999999999888654 34555444445567889999999999999 556899999999999999998865544
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceec--------------eeeeeeeecC-------
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTE--------------IHKGLDFSAD------- 137 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~--------------~~~~~~~~~~------- 137 (409)
..+|...|.+++|+|++++|++++.||.|++||+.+++......... ......+.+.
T Consensus 739 --~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 739 --MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp --ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred --ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 34677799999999999999999999999999998765432221110 0001111111
Q ss_pred -------------------CCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 138 -------------------GDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 138 -------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
..+|...|.+++|+|+++++++++.++.|++||+.++..+..+.+|...|.+++|+ +++.
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~ 895 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-PDGS 895 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSS
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC-CCCC
Confidence 12567789999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEeeCCCeEEEeccccc-------------------------------------------------------------
Q 015301 199 LIFSGSDDSLCKVWDRRCF------------------------------------------------------------- 217 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~------------------------------------------------------------- 217 (409)
.|++++.||.|++||++..
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 975 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence 9999999999999996421
Q ss_pred --------------ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 218 --------------ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 218 --------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
...+.....+.+|...|.+++|+|++++|++++.||.|++||+.+......... ......+
T Consensus 976 l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~v~~~ 1050 (1249)
T 3sfz_A 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH-----QETVKDF 1050 (1249)
T ss_dssp EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC-----SSCEEEE
T ss_pred EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC-----CCcEEEE
Confidence 001223344557888999999999999999999999999999988654322111 1111111
Q ss_pred cccccc-----------eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 284 EYPSYA-----------RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 284 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
.+.+.. .......+..+..+.+|. ..+.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 1051 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~------~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A 1051 RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQ------GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp EECSSSEEEEEESSSEEEEEETTTTCCCEEEECCS------SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC
T ss_pred EEcCCCcEEEEECCCcEEEEECCCCceeEEEcccC------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec
Confidence 111111 122223344445555554 234567899999999999999999999999999999999
Q ss_pred cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 353 FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 353 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+|...|++++|+|++++|++++.||.|++||+.++...
T Consensus 1125 ~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 99999999999999999999999999999999876643
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-44 Score=318.99 Aligned_cols=294 Identities=15% Similarity=0.093 Sum_probs=218.5
Q ss_pred eeecCCCCeEEEEECCC------CCEEEEEeCCCcEEEEEcCCCeee--------eeeeecccccceEEEEEeCCCCcEE
Q 015301 35 KVDGMNSRVYTSQFSND------GSFFVAASQESNIKVYNVDKNWKI--------QKDIETKALRWTITDTSLSPDQRFL 100 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~------~~~l~t~~~d~~i~vw~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l 100 (409)
.+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+..+... .......+|...|++++|+|++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 46788999999999997 579999999999999999876321 0112345677899999999864 89
Q ss_pred EEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEE--EEcCCC-CeEEEEEecCeEEEEECCCCeee
Q 015301 101 VYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSV--KFSTDG-QELVAAGSDNFIYVYDLQANKCS 177 (409)
Q Consensus 101 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~ 177 (409)
++|+.||+|++||+.++..... .. ..|...|.++ +|+|++ .+|++++.|++|++||+++++..
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~--~~------------~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSF--YD------------QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSE--EE------------ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred EEEeCCCEEEEEECCCCCCceE--Ee------------ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 9999999999999986532110 00 1456689999 578887 89999999999999999998877
Q ss_pred eEEcCCCC--CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcE
Q 015301 178 LRIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 178 ~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
..+.+|.. .|.+++|+ |++..+++++.|++|++||++ .......+.+|.+.|++++|+|++++|++|+.||+|
T Consensus 347 ~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp CEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred cccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEE
Confidence 77766653 58899999 788899999999999999976 566667788999999999999999999999999999
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
++||+... .+...+.... ......++.++|+|+++.+.. ..
T Consensus 422 ~lwd~~~~-----------------------------------~~~~~~~~~~-~~~~~~v~~v~~sp~g~~~~~-~~-- 462 (524)
T 2j04_B 422 IITNAARR-----------------------------------LLHGIKNSSA-TQKSLRLWKWDYSIKDDKYRI-DS-- 462 (524)
T ss_dssp ECCBSCSS-----------------------------------TTTCC-------CCCCEEEECBCCSSSCEEEE-CC--
T ss_pred EEEechHh-----------------------------------hccccccCcc-ceeeeEEEEeccCCCCCeEEc-cC--
Confidence 99997541 1111110000 000123467789999985532 22
Q ss_pred eEEEEEcc-CCceEEEeccCCcceeeeEEecCcC---eEEeecCCCeEEEEecCCC
Q 015301 336 SVYIYDLV-SGAQVAKLDFHNAPVRDCCWHPIYP---MLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 336 ~v~i~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~~ 387 (409)
.+.+|+.. ++..+..+.+|...|.+++|+|+++ +|++|+.||.|+||++...
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 23444443 5777888999999999999999965 9999999999999998753
No 48
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-42 Score=303.74 Aligned_cols=286 Identities=16% Similarity=0.195 Sum_probs=233.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.++.|+||++ ++||+|. |++|+|||..++... ......+|...|++++|+|+|++|++|+.||.|++||+.+++...
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 4678999986 5787775 899999999998544 445566777789999999999999999999999999998876532
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
.. .+|...+.++++ ++..|++|+.|+.+++||.... ..+..+.+|...+..+.++ +++.++
T Consensus 184 ~~---------------~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~l 245 (420)
T 4gga_A 184 NM---------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHL 245 (420)
T ss_dssp EE---------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEE
T ss_pred EE---------------eCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec-CCCCee
Confidence 22 135557888777 5678999999999999998764 4456788999999999999 899999
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC-eEEE--EeCCCcEEEeeCCCCcccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-YFIS--NGKDQTTKLWDIRKMSSNTTDNSRLRDYD 277 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 277 (409)
++++.|+.+++|+.+..............|...|.+++|+|.+. .+++ |+.|+.|++||+++.
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-------------- 311 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-------------- 311 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT--------------
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc--------------
Confidence 99999999999998643333445667778999999999999765 4444 457999999999873
Q ss_pred cccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe--CCCeEEEEEccCCceEEEeccCC
Q 015301 278 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS--SDNSVYIYDLVSGAQVAKLDFHN 355 (409)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~~~~~ 355 (409)
..+..+..+.. +.+..++|+++.+++++ .|+.|+|||+.+++++.++.+|.
T Consensus 312 --------------------~~~~~~~~~~~-------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~ 364 (420)
T 4gga_A 312 --------------------ACLSAVDAHSQ-------VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT 364 (420)
T ss_dssp --------------------EEEEEEECSSC-------EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred --------------------ccceeeccccc-------eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence 33444444432 23456788898888765 68999999999999999999999
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+.|++++|+||+++|+||+.||+|++||+.+...
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 9999999999999999999999999999976543
No 49
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-43 Score=345.22 Aligned_cols=359 Identities=16% Similarity=0.169 Sum_probs=275.9
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
..+++|||||+++++++. ..+|..........+.+|.+.|.+++|+|+|++||+++.|++|++||+.++..+..
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--- 694 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT--- 694 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE---
Confidence 468999999999888654 34555544455568889999999999999999999999999999999999866554
Q ss_pred cccccceEEEEEeCC--CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 81 TKALRWTITDTSLSP--DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
..+|...|.+++|+| ++.++++++.|+.|++||+.+++..... .+|...|.+++|+|++++++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---------------~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM---------------FGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE---------------CCCSSCEEEEEECSSTTEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee---------------cCCCCCEEEEEEecCCCEEE
Confidence 345677999999999 5568999999999999999887643221 14566899999999999999
Q ss_pred EEEecCeEEEEECCCCeeeeEE-------------------------------------------------------cCC
Q 015301 159 AAGSDNFIYVYDLQANKCSLRI-------------------------------------------------------PAH 183 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~-------------------------------------------------------~~~ 183 (409)
+++.||.|++||+.+++....+ .+|
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 9999999999998776543322 267
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
...|.+++|+ +++.++++++.||.|++||+. .+.....+.+|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 840 ~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 840 HSTIQYCDFS-PYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp SSCCCEEEEC-SSTTEEEEECSSSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred CCceEEEEEc-CCCCEEEEEeCCCeEEEEEcC----CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 8889999999 899999999999999999965 77888888999999999999999999999999999999998753
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccc--eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV--LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
.......... .....................+....+... .......+.+.+++|+++++++|+.+|.|++||
T Consensus 915 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 915 CKNSAIVLKQ-----EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989 (1249)
T ss_dssp HSCCSSSEEE-----EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE
T ss_pred ceeeeecccc-----eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 2221110000 000000000000001111111111111110 001112345678999999999999999999999
Q ss_pred ccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 342 LVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++...
T Consensus 990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp TTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred cCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 9999999999999999999999999999999999999999999876543
No 50
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-43 Score=299.80 Aligned_cols=278 Identities=19% Similarity=0.284 Sum_probs=228.1
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee---eee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK---IQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~ 77 (409)
+.+++|+||++++++++.+ .+|...+......+..|...|.+++|+|+|++|++|+.|+.+++|++..... ...
T Consensus 67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~ 146 (354)
T 2pbi_B 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 146 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGG
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccccc
Confidence 5789999999998887655 3444434444557788999999999999999999999999999999865311 111
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCC
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQ 155 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 155 (409)
......|...|.+++|+|++..|++++.|+.|++||+.+++..... .+|...|.+++|+| +++
T Consensus 147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF---------------HGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------------ECCSSCEEEEEECCCSSCC
T ss_pred ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------------cCCCCCeEEEEEEeCCCCC
Confidence 2233457779999999999999999999999999999887643221 13555799999987 568
Q ss_pred eEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec--cccc
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEG 233 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~ 233 (409)
+|++|+.|+.|++||+++++++..+.+|...|.+++|+ |++++|++++.|++|++||++ .......+.. +...
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~----~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLR----ADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCTTCCSC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCcccc
Confidence 99999999999999999999999999999999999999 889999999999999999986 3444443332 3357
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 234 ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+.+++|+|++++|++++.|+.|++||+.+ +..+..+.+|.
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~----------------------------------~~~~~~l~~h~------ 326 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLK----------------------------------GSRVSILFGHE------ 326 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCCS------
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCC----------------------------------CceEEEEECCC------
Confidence 89999999999999999999999999977 34455666666
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEE
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYD 341 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d 341 (409)
..+.+++|+|++++|++|+.||.|++|+
T Consensus 327 ~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 327 NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3455678999999999999999999996
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-44 Score=314.06 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=241.8
Q ss_pred CCCeEEEEECCCCC-EEEEE----------eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 40 NSRVYTSQFSNDGS-FFVAA----------SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 40 ~~~v~~~~~s~~~~-~l~t~----------~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
...|.+++|+|+|+ +|+++ +.|+.|++|++.++..... .....|...|.+++|+|++++|++++.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-IASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-SCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-EEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 35689999999997 99999 8899999999988743222 222346678999999999999999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCe------eeeE--
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANK------CSLR-- 179 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~------~~~~-- 179 (409)
|++||+.+...... .......|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....
T Consensus 91 v~vw~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 91 LELYSTNEANNAIN-----------SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp EEEECCSSTTSCCC-----------EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred EEEeeccccccccc-----------chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc
Confidence 99999987321100 00011245668999999998 8999999999999999999876 3332
Q ss_pred -EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc------ccceeEEEEcCCC-CeEEEEeC
Q 015301 180 -IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH------LEGITFIDSRRDG-RYFISNGK 251 (409)
Q Consensus 180 -~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~ 251 (409)
...|...|.+++|+|..+.+|++++.||.|++||++ .......+..+ ...+.+++|+|++ .++++++.
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 367999999999994448999999999999999976 56666666665 7889999999997 68999999
Q ss_pred CC---cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecC-CCC
Q 015301 252 DQ---TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYST-AQK 326 (409)
Q Consensus 252 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~-~~~ 326 (409)
|+ .|++||+++.. ..+..+. +|. ..+.+++|+| +++
T Consensus 236 d~~~~~i~~~d~~~~~---------------------------------~~~~~~~~~~~------~~v~~~~~s~~~~~ 276 (416)
T 2pm9_A 236 SDNDPSILIWDLRNAN---------------------------------TPLQTLNQGHQ------KGILSLDWCHQDEH 276 (416)
T ss_dssp CSSSCCCCEEETTSTT---------------------------------SCSBCCCSCCS------SCEEEEEECSSCSS
T ss_pred CCCCceEEEEeCCCCC---------------------------------CCcEEeecCcc------CceeEEEeCCCCCC
Confidence 98 99999998732 2233333 444 2345668888 899
Q ss_pred EEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCc-CeEEeecCCCeEEEEecCCCcccC
Q 015301 327 YIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY-PMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
+|++++.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++.||.|++|++.......
T Consensus 277 ~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp CEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred eEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99999999999999999999999999999999999999999 799999999999999998766543
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-44 Score=312.24 Aligned_cols=298 Identities=12% Similarity=0.086 Sum_probs=223.7
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.....|.++|++++|+|+|++||+++.|+.|++|++.++. ........+|...|.+++|+|++++|++++.|+.|++||
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 3455678899999999999999999999999999998772 122334556888999999999999999999999999999
Q ss_pred cCCCc-cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe---eeeEEcC-CCCCeE
Q 015301 114 VGSSA-RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---CSLRIPA-HKSDVN 188 (409)
Q Consensus 114 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~-~~~~v~ 188 (409)
+.+++ ...... ...|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.
T Consensus 84 ~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 84 KRPDGTWKQTLV-------------LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp -----CCCCEEE-------------CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred cCCCCceeeeeE-------------ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 98876 111111 12355689999999999999999999999999999887 3667777 999999
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccc--------------cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFI--------------SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
+++|+ +++++|++++.|+.|++||++... ..+.....+ +|...|.+++|+|++++|++++.||.
T Consensus 151 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 151 SLDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 99999 789999999999999999974211 123445555 89999999999999999999999999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
|++||+++..... ..+..+.+|. ..+.+++|+|++++|++|+.+
T Consensus 229 i~iwd~~~~~~~~------------------------------~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 229 VTIAYPSAPEQPP------------------------------RALITVKLSQ------LPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp EC-CEECSTTSCE------------------------------EECCCEECSS------SCEEEEEEEETTEEEEEESSS
T ss_pred EEEEECCCCCCcc------------------------------eeeEeecCCC------CceEEEEEcCCCCEEEEEcCC
Confidence 9999998743210 1144455555 234566889999999999877
Q ss_pred CeEEEEEccCCc--e-------------------------E---------EEe----------------ccCCcceeeeE
Q 015301 335 NSVYIYDLVSGA--Q-------------------------V---------AKL----------------DFHNAPVRDCC 362 (409)
Q Consensus 335 g~v~i~d~~~~~--~-------------------------~---------~~~----------------~~~~~~v~~~~ 362 (409)
+.+ +|+..... . . ..+ ..|...|++++
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLR 351 (377)
T ss_dssp SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEE
T ss_pred cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEe
Confidence 766 66654211 0 0 011 13899999999
Q ss_pred EecCcC----eEEeecCCCeEEEEec
Q 015301 363 WHPIYP----MLISSSWDCNIVRWEI 384 (409)
Q Consensus 363 ~s~~~~----~l~s~~~dg~i~iw~~ 384 (409)
+.+... .|+|+|.||.|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccCCCCCceEEEEeecCCCcEEEecC
Confidence 766543 5999999999999986
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-43 Score=306.59 Aligned_cols=291 Identities=14% Similarity=0.166 Sum_probs=238.9
Q ss_pred eeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEc----CCCee------eeeeee-cc------cccceEEEEEeCCC
Q 015301 35 KVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNV----DKNWK------IQKDIE-TK------ALRWTITDTSLSPD 96 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~----~~~~~------~~~~~~-~~------~~~~~v~~~~~s~~ 96 (409)
....|.+.|++++|+|+|+ +||+++.||.|++|++ .++.. ...... .. +|...|.+++|+|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 3345669999999999999 9999999999999999 77752 222111 11 25668999999999
Q ss_pred CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee
Q 015301 97 QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC 176 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 176 (409)
+++|++++.||.|++||. +++..... ..|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 120 ~~~l~~~~~dg~i~i~~~-~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNK-TGALLNVL---------------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp SSEEEEEETTSCEEEEET-TSCEEEEE---------------CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCeEEEEeC-CCCeeeec---------------cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 999999999999999993 33221111 13455799999999999999999999999999999999
Q ss_pred eeEEcCCCCC---------------eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 177 SLRIPAHKSD---------------VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 177 ~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
+..+..+... +.+++|+ ++ ..+++++.+|.|++||++ .......+..|...|.+++|+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWV-DD-DKFVIPGPKGAIFVYQIT----EKTPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEE-ET-TEEEEECGGGCEEEEETT----CSSCSEEECCCSSCEEEEEEET
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEc-CC-CEEEEEcCCCeEEEEEcC----CCceeeeeccCCCceEEEEECC
Confidence 9888877776 9999999 54 568899999999999975 5677777888999999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
++++|++++.|+.|++||+++. ..+..+..|. ..+.+++|
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~----------------------------------~~~~~~~~~~------~~i~~~~~ 297 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNG----------------------------------NSQNCFYGHS------QSIVSASW 297 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSB----------------------------------SCSEEECCCS------SCEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCC----------------------------------ccceEecCCC------ccEEEEEE
Confidence 9999999999999999999873 3344454444 23456678
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+|++ ++++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+....
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 8988 99999999999999999999999999999999999999999999999999999999998655
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-42 Score=317.95 Aligned_cols=326 Identities=16% Similarity=0.196 Sum_probs=239.7
Q ss_pred ceeeEEecCceeEeeccce-----EEEEeeecCCCceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH-----VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-----~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
..+++|+|||+++++.+.. .+..+-.......+.+|...|++++|+|+++ ++++++.|+.|++||+.++.....
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~ 198 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 198 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee
Confidence 5789999999988876543 3333333344457889999999999999998 899999999999999988755444
Q ss_pred eeecccccc---eEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC
Q 015301 78 DIETKALRW---TITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153 (409)
Q Consensus 78 ~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (409)
...|.. .|.+++|+|+ +++|++++.||.|++||+.+++........ ...|...|.+++|+ +
T Consensus 199 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~-~ 263 (615)
T 1pgu_A 199 ---DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD-----------QEPVQGGIFALSWL-D 263 (615)
T ss_dssp ---ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT-----------TBCCCSCEEEEEES-S
T ss_pred ---ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc-----------ccccCCceEEEEEc-C
Confidence 345666 8999999999 999999999999999999887654333000 00122345555555 5
Q ss_pred CCeEEEEEecCeEEEEEC---------------------------------------------CCCeeeeEEcCCCCCeE
Q 015301 154 GQELVAAGSDNFIYVYDL---------------------------------------------QANKCSLRIPAHKSDVN 188 (409)
Q Consensus 154 ~~~l~~~~~d~~i~v~d~---------------------------------------------~~~~~~~~~~~~~~~v~ 188 (409)
+++|++++.|+.|++||+ .+++.+..+.+|...|.
T Consensus 264 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~ 343 (615)
T 1pgu_A 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGIT 343 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEE
Confidence 555555555555555554 44444455556666665
Q ss_pred EEEEeC--------------------------------CCCcEEEEeeCCCeEEEeccccccc-----------------
Q 015301 189 TVCFAD--------------------------------ETGHLIFSGSDDSLCKVWDRRCFIS----------------- 219 (409)
Q Consensus 189 ~~~~~~--------------------------------~~~~~l~~~~~dg~i~iwd~~~~~~----------------- 219 (409)
+++| | +++..|++++.|+.+++||++....
T Consensus 344 ~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~ 422 (615)
T 1pgu_A 344 ALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 422 (615)
T ss_dssp EEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEE
T ss_pred EEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEE
Confidence 5555 2 1245666666666666666542100
Q ss_pred -----------------------------------------------------CCcee-eeeeccccceeEEEEcCCCCe
Q 015301 220 -----------------------------------------------------KGRAN-GVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 220 -----------------------------------------------------~~~~~-~~~~~~~~~v~~~~~~~~~~~ 245 (409)
..... ..+..|...|.+++|+|++++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 423 LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 502 (615)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred EeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCE
Confidence 00111 445568889999999999999
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecC-
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYST- 323 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~- 323 (409)
|++++.||.|++||+.+. ..+..+.+ |. ..+.+++|+|
T Consensus 503 l~~~~~dg~i~iw~~~~~----------------------------------~~~~~~~~~h~------~~v~~~~~sp~ 542 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSR----------------------------------EVKTSRWAFRT------SKINAISWKPA 542 (615)
T ss_dssp EEEEETTSCEEEEETTTT----------------------------------EEEECCSCCCS------SCEEEEEECCC
T ss_pred EEEcCCCCeEEEeeCCCC----------------------------------cceeEeecCCC------CceeEEEEcCc
Confidence 999999999999999873 33444444 43 3355668999
Q ss_pred ---------CCCEEEEEeCCCeEEEEEccCC-ceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 324 ---------AQKYIYTGSSDNSVYIYDLVSG-AQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 324 ---------~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|++..
T Consensus 543 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 78899999999999999999999 99999999999999874
No 55
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.2e-42 Score=287.61 Aligned_cols=300 Identities=17% Similarity=0.198 Sum_probs=235.0
Q ss_pred EeeecCCCceeec--CCC--CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE
Q 015301 26 RYLPVNGPWKVDG--MNS--RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV 101 (409)
Q Consensus 26 ~~~~~~~~~~l~~--h~~--~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 101 (409)
+++|..+...|.. ... ..++|+||+++ +||+|. |++|+|||+++++.+. .+...+|...|++++|+|++++|+
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCCEEE
Confidence 4556666566653 222 35789999986 777764 8999999999985544 445667778899999999999999
Q ss_pred EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEE
Q 015301 102 YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRI 180 (409)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~ 180 (409)
+|+.||.|++||+.+++...... +|...+.++ ++++..+++++.++.+.+|+.... ..+..+
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~---------------~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMT---------------SHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE---------------CCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEECCCcEEEeecCCceeEEEec---------------CccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEE
Confidence 99999999999999886533221 233345554 456778999999999999998765 445667
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE---EEEeCCCcEEE
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF---ISNGKDQTTKL 257 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~i 257 (409)
.+|...+..+.+. +++++|++++.||.|++||++..............+...|.++.++|++..+ ++++.++.|++
T Consensus 147 ~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 147 SGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp ECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred cCccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 8899999999999 8899999999999999999874433344556666788899999999977644 35677899999
Q ss_pred eeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe--CCC
Q 015301 258 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS--SDN 335 (409)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg 335 (409)
||.+... ........ ..+....++|+++.+++++ .|+
T Consensus 226 wd~~~~~----------------------------------~~~~~~~~-------~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 226 WNVCSGA----------------------------------CLSAVDAH-------SQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp EETTTCC----------------------------------EEEEEECS-------SCEEEEEEETTTTEEEEEECTTTC
T ss_pred Eeccccc----------------------------------ccccccce-------eeeeeeeecccccceEEEEEcCCC
Confidence 9987732 11111111 1123446778888877654 799
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.|++||+.+++++.++.+|.+.|++++|+|++++|+|++.||+|++||+.+.
T Consensus 265 ~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999764
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-42 Score=299.44 Aligned_cols=287 Identities=20% Similarity=0.223 Sum_probs=231.1
Q ss_pred cCCCCe--EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC
Q 015301 38 GMNSRV--YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 38 ~h~~~v--~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~ 115 (409)
+|...+ .+++|++ ..+++++.|+.|++|++.++....... ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 676654 4466665 558888899999999999886544332 2266789999999999999999999999999998
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-CCeeeeEEcCCCCCeEEEEEeC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
+++..... ..|...|.+++| ++++|++++.||.|++||++ ....+..+.+|...|.+++|+
T Consensus 165 ~~~~~~~~---------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~- 226 (401)
T 4aez_A 165 SQTKLRTM---------------AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR- 226 (401)
T ss_dssp TCCEEEEE---------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-
T ss_pred CCeEEEEe---------------cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc-
Confidence 77543221 135557999999 56799999999999999998 566677888999999999999
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCe-EEEEe--CCCcEEEeeCCCCcccccccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY-FISNG--KDQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~~~~~~~~ 271 (409)
+++++|++++.||.|++||++ .......+..|...|.+++|+|++.. +++++ .|+.|++||+++.
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-------- 294 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-------- 294 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC--------
T ss_pred CCCCEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC--------
Confidence 799999999999999999976 67777788889999999999997754 55544 6999999999873
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE--EeCCCeEEEEEccCCceE-
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDNSVYIYDLVSGAQV- 348 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg~v~i~d~~~~~~~- 348 (409)
..+..+..+. .+.+++|+|++++|++ |+.||.|++||+.+++..
T Consensus 295 --------------------------~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 295 --------------------------ARVNTVDAGS-------QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp --------------------------CEEEEEECSS-------CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred --------------------------CEEEEEeCCC-------cEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence 3333443221 2456689999999999 448999999999986554
Q ss_pred -EEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcccC
Q 015301 349 -AKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 391 (409)
Q Consensus 349 -~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 391 (409)
..+.+|...|.+++|+|++++|++++.||.|++|++.+++...
T Consensus 342 ~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 342 QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 4467899999999999999999999999999999998876543
No 57
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.1e-42 Score=287.01 Aligned_cols=282 Identities=12% Similarity=0.198 Sum_probs=222.5
Q ss_pred ceeeEEecCc-eeEeeccce---EEEEeeecC-----CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRG-RFSAADSCH---VLSRYLPVN-----GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~~~~---~~~~~~~~~-----~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
..+++|+|++ .++++++.+ .+|...... +...+.+|...|.+++|+|+|++|++|+.|++|++||+.+++.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~ 99 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET 99 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe
Confidence 5689999975 677765543 445443322 2347889999999999999999999999999999999999866
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD- 153 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 153 (409)
+.. ..+|...|.+++|+|++.+|++++.|+.|++||+........ .+|...|.+++|+|.
T Consensus 100 ~~~---~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~----------------~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 100 YQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL----------------LGHNDWVSQVRVVPNE 160 (319)
T ss_dssp EEE---EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE----------------CCCSSCEEEEEECCC-
T ss_pred eEE---EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE----------------eccCCcEEEEEEccCC
Confidence 554 345777999999999999999999999999999964322111 245557999999985
Q ss_pred -----CCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee
Q 015301 154 -----GQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM 228 (409)
Q Consensus 154 -----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 228 (409)
+..+++++.|+.|++||+.+.+....+.+|...|.+++|+ |++++|++++.||.|++||++ ..+.+..+.
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~----~~~~~~~~~ 235 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLA----AKKAMYTLS 235 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETT----TTEEEEEEE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC----CCcEEEEec
Confidence 4489999999999999999999999999999999999999 899999999999999999975 566666665
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
. ...|.+++|+|++.+|++++.+ .+++|++...... ..+..+..
T Consensus 236 ~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~----------------------------------~~~~~~~~ 279 (319)
T 3frx_A 236 A-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLV----------------------------------DDLRPEFA 279 (319)
T ss_dssp C-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEE----------------------------------EEECCCCT
T ss_pred C-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeee----------------------------------eccCcccc
Confidence 4 4689999999999998887765 5999998763211 11111000
Q ss_pred --eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 309 --LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 309 --~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
.......+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 280 ~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 0001123456789999999999999999999999764
No 58
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-42 Score=325.96 Aligned_cols=372 Identities=8% Similarity=-0.025 Sum_probs=242.9
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCC--------------ceeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEE
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGP--------------WKVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYN 68 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--------------~~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~ 68 (409)
..+++|+|++.+++++.......++..... ..+.+|.++|++++|+|+ +..|++|+.||.| +||
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 568999999999887654322222222211 234789999999999996 5789999999999 999
Q ss_pred cCCCeeeeeeeec---------------ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce--------
Q 015301 69 VDKNWKIQKDIET---------------KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV-------- 125 (409)
Q Consensus 69 ~~~~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-------- 125 (409)
+.++......... ..|...|.+++|+|++++|++++.||.|++||+.+++.......
T Consensus 180 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~ 259 (902)
T 2oaj_A 180 LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP 259 (902)
T ss_dssp TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence 9988655443222 23456799999999999999999999999999988764321000
Q ss_pred -----------eceeeeeeeecC--------------CC-----------------------------------------
Q 015301 126 -----------TEIHKGLDFSAD--------------GD----------------------------------------- 139 (409)
Q Consensus 126 -----------~~~~~~~~~~~~--------------~~----------------------------------------- 139 (409)
......+.|.+. ..
T Consensus 260 ~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (902)
T 2oaj_A 260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL 339 (902)
T ss_dssp CTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC
T ss_pred CCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec
Confidence 001111111100 00
Q ss_pred CcceeeEEEEEcC----------CCCeEEEEEecCeEEEEECCCCeeeeE-------EcCCCCCe---------------
Q 015301 140 EDEFGIFSVKFST----------DGQELVAAGSDNFIYVYDLQANKCSLR-------IPAHKSDV--------------- 187 (409)
Q Consensus 140 ~~~~~v~~~~~~~----------~~~~l~~~~~d~~i~v~d~~~~~~~~~-------~~~~~~~v--------------- 187 (409)
.+...|.++.+.+ +...+++++.|+.|++||+.++..... +..|...|
T Consensus 340 ~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~ 419 (902)
T 2oaj_A 340 PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG 419 (902)
T ss_dssp SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence 1123344555543 233677778889999999877643221 22233344
Q ss_pred -------------------EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee--e-----eccccceeEEEEcC
Q 015301 188 -------------------NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV--L-----MGHLEGITFIDSRR 241 (409)
Q Consensus 188 -------------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~-----~~~~~~v~~~~~~~ 241 (409)
..++|+ +++++|++|+.|++|++||+............ + .+|...|.+++|+|
T Consensus 420 ~~~~~~~~~~~l~G~~~~v~sv~~s-pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp 498 (902)
T 2oaj_A 420 ALSAAQNKDYLLKGGVRTKRQKLPA-EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA 498 (902)
T ss_dssp HHHTTBCCCCSCCCSBCCCCCCCCC-SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET
T ss_pred HHhcccCCCCcccCCcCCCCccccc-ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC
Confidence 444556 68899999999999999997632110000011 1 17888999999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCccccc---cccccccccccccccccccc-ceecccc-------Cccceeeeeccccee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTT---DNSRLRDYDWDYRWMEYPSY-ARRLKHP-------HDQSLATYKGHSVLR 310 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~ 310 (409)
++++|++++.||+|++||+.+...... .......+.+....+...+. ...+... ...++..+.+|.
T Consensus 499 dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~--- 575 (902)
T 2oaj_A 499 ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK--- 575 (902)
T ss_dssp TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS---
T ss_pred CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC---
Confidence 999999999999999999987532100 00000000000000000000 0000000 012345555555
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE-----Eec-cCCcceeeeEEe-----cCc---CeEEeecCC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA-----KLD-FHNAPVRDCCWH-----PIY---PMLISSSWD 376 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~-----~~~-~~~~~v~~~~~s-----~~~---~~l~s~~~d 376 (409)
..+++++||||| +||+|+.|++|+|||++++..+. .+. +|...|++++|+ ||| ++|++++.|
T Consensus 576 ---~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 576 ---GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp ---CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred ---CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 456778899999 99999999999999998877654 233 889999999999 885 799999999
Q ss_pred CeEEEEec
Q 015301 377 CNIVRWEI 384 (409)
Q Consensus 377 g~i~iw~~ 384 (409)
|+|++||+
T Consensus 652 ~tv~~wd~ 659 (902)
T 2oaj_A 652 GEVITYKI 659 (902)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEE
Confidence 99999999
No 59
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-43 Score=304.14 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=229.2
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee----ee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK----IQ 76 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~----~~ 76 (409)
..+++|||||+++++++.+ .+|+.........+.+|...|.+++|+|+|++||+|+.|+.+++|++.+... ..
T Consensus 69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~ 148 (380)
T 3iz6_a 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMP 148 (380)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSST
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcc
Confidence 5789999999998887654 4444434444567889999999999999999999999999999999875421 11
Q ss_pred eeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CC
Q 015301 77 KDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DG 154 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 154 (409)
......+|...|.++.|+|+ +..|++|+.|+.|++||+.+++....... ....+|...|.+++|++ ++
T Consensus 149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS----------EFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC----------CSSSSCCSCEEEEEECSSSC
T ss_pred ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec----------ccCCCCccCeEEEEeecCCC
Confidence 12235578888999999997 45799999999999999998765332211 11135667899999987 88
Q ss_pred CeEEEEEecCeEEEEECC-CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc--
Q 015301 155 QELVAAGSDNFIYVYDLQ-ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-- 231 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 231 (409)
++|++|+.|+.|++||++ .++.+..+.+|...|.+++|+ |++++|++++.||+|++||++ .+..+..+..+.
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~----~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMR----TGHQLQVYNREPDR 293 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETT----TTEEEEEECCCCSS
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECC----CCcEEEEecccccc
Confidence 999999999999999997 457788899999999999999 899999999999999999976 555555544332
Q ss_pred -----cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee---
Q 015301 232 -----EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY--- 303 (409)
Q Consensus 232 -----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 303 (409)
..|.+++|+|+|++|++++.||.|++||+...+ .+..+
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----------------------------------~~~~~~~~ 339 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE----------------------------------MVLNLGTL 339 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC----------------------------------EEEEECCS
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc----------------------------------eEEEEecc
Confidence 348999999999999999999999999987632 22222
Q ss_pred -ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 304 -KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.+|. ..+.+++|+|+|++|++|+.||.|++|++...+
T Consensus 340 ~~~h~------~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 340 QNSHE------GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSCC------CCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cCCCC------CceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 3343 234566899999999999999999999987654
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.2e-42 Score=291.54 Aligned_cols=291 Identities=18% Similarity=0.247 Sum_probs=240.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
|.++|.+++|+|||++++++..++.+.+|.......... ...|...|.+++|+|++++|++++ ||.|++||+.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN---TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE---EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce---eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 557899999999999999988887777776554433322 335777999999999999999999 9999999998765
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~ 196 (409)
......... ...|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+ ++
T Consensus 84 ~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 152 (337)
T 1gxr_A 84 NKSPVSQLD----------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PD 152 (337)
T ss_dssp CCSCSEEEE----------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-TT
T ss_pred ceeeeeccc----------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-CC
Confidence 432222111 11345579999999999999999999999999999887 566778899999999999 79
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
+++|++++.||.|++||++ .......+..|...+.+++|+|++++|++++.||.|++||+++..
T Consensus 153 ~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------ 216 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR------------ 216 (337)
T ss_dssp SSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------------
T ss_pred CCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc------------
Confidence 9999999999999999975 677788888899999999999999999999999999999998732
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 356 (409)
.+..+.. . ..+.+++|+|++++|++++.++.|++||+.+++.. .+..|..
T Consensus 217 ----------------------~~~~~~~-~------~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~ 266 (337)
T 1gxr_A 217 ----------------------QLQQHDF-T------SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHES 266 (337)
T ss_dssp ----------------------EEEEEEC-S------SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSS
T ss_pred ----------------------eEeeecC-C------CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCcc
Confidence 2222221 1 22456689999999999999999999999888764 6678999
Q ss_pred ceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 357 PVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.|.+++|+|++++|++++.||.|++|++..+...
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 9999999999999999999999999999876544
No 61
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.6e-42 Score=292.49 Aligned_cols=299 Identities=15% Similarity=0.147 Sum_probs=237.4
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCc-EEEEEecCCEEEEEEc
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQR-FLVYASICAIVNIVDV 114 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~~w~~ 114 (409)
..+|.+.|++++|+|++++|++++.|+.|++|++.++...........|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 348999999999999999999999999999999988752222233346777999999999999 9999999999999999
Q ss_pred -CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC---------CeeeeEEcCCC
Q 015301 115 -GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA---------NKCSLRIPAHK 184 (409)
Q Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~ 184 (409)
.+++...... ..|...|.+++|+| +++|++++.|+.|++||+.+ ++++..+. |.
T Consensus 87 ~~~~~~~~~~~--------------~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 87 IGSPSFQALTN--------------NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK 150 (342)
T ss_dssp SSSSSEEECBS--------------CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred ccCCceEeccc--------------cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence 7765411110 01555799999999 99999999999999999987 77666666 89
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..|.+++|+ +++ +++++.|+.|++||++.. ...........|...+.+++|+| +++++++++.||.+++|+++..
T Consensus 151 ~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 151 NKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLC-EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CCEEEEEEC-SSE--EEEEESTTEEEEEESSCC-TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CceEEEEec-CCc--EEEEeCCCeEEEEECCcc-ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 999999999 554 999999999999998620 11223334556788999999999 9999999999999999999763
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeeccccee---eeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR---TLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
.... .......+..|.... .....+.+++|+|++++|++++.||.|++|
T Consensus 227 ~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 227 GDDY----------------------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp CCST----------------------------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred Cccc----------------------------ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 1000 012233444443200 011245567899999999999999999999
Q ss_pred EccCCceEEEeccC-CcceeeeEEecCcCeEEeecCCCe-EEEEec
Q 015301 341 DLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISSSWDCN-IVRWEI 384 (409)
Q Consensus 341 d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~ 384 (409)
|+.+++.+..+.+| ..+|++++ |++++|++++.||. .+.|..
T Consensus 279 d~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 279 NLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred cCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99999999999998 99999999 99999999999998 655554
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-42 Score=303.06 Aligned_cols=284 Identities=14% Similarity=0.191 Sum_probs=228.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..+++++|+|+|++|++++.|+.|++||+.++..... ...+ ..+....|+|++++|++++.||.|++||+.+++..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~---~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM---LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT---SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeE---EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 3455899999999999999999999999987643322 2222 34556678999999999999999999999876543
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
... ..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|
T Consensus 133 ~~~---------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l 196 (420)
T 3vl1_A 133 EID---------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNV 196 (420)
T ss_dssp EET---------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEE
T ss_pred eec---------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEE
Confidence 221 2456689999999999999999999999999999999999999999999999999 889999
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeec---cc---------------------cceeEEEEcCCCCeEEEEeCCCcEE
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMG---HL---------------------EGITFIDSRRDGRYFISNGKDQTTK 256 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~---------------------~~v~~~~~~~~~~~l~~~~~dg~i~ 256 (409)
++++.||.|++||++ .+.....+.. |. ..+.+++|+|++++|++++.||.|+
T Consensus 197 ~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 197 LSASLDGTIRLWECG----TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp EEEETTSCEEEEETT----TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred EEEcCCCcEEEeECC----CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 999999999999976 5556655553 22 4445555688999999999999999
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecCCCC-EEEEEeCC
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQK-YIYTGSSD 334 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~d 334 (409)
+||+++.. .+..+. .|. ..+.+++|+|+++ +|++|+.|
T Consensus 273 i~d~~~~~----------------------------------~~~~~~~~~~------~~v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 273 VHNVFSKE----------------------------------QTIQLPSKFT------CSCNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp EEETTTCC----------------------------------EEEEECCTTS------SCEEEEEECSSCTTEEEEEETT
T ss_pred EEECCCCc----------------------------------eeEEcccccC------CCceeEEEeCCCCCEEEEEeCC
Confidence 99998732 222222 232 2345668999998 99999999
Q ss_pred CeEEEEEccCCce-EEEecc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 335 NSVYIYDLVSGAQ-VAKLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 335 g~v~i~d~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
|.|++||+++++. +..+.. |...|.++.| +++++|++++.||.|++|++.....
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 9999999998754 677776 6677888855 5788999999999999999987543
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-41 Score=320.87 Aligned_cols=294 Identities=16% Similarity=0.209 Sum_probs=249.0
Q ss_pred CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 32 GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 32 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
....+.+|.+.|++++|+|+|++||+++.||.|+|||+.++..+... ..|...|.+++|+|++++|++++.||.|++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE---ecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999999988665543 356679999999999999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTV 190 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~ 190 (409)
||+.+++...... .|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.++
T Consensus 82 w~~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 82 FNYNTGEKVVDFE---------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp EETTTCCEEEEEE---------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred EECCCCcEEEEEe---------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 9998876432221 34557999999999999999999999999999887 6677788999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc-cceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-EGITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
+|+|.+++.|++++.||.|++||++ .......+..+. ..+..++|+| ++.+|++++.||.|++||+++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 217 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----- 217 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-----
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence 9994488999999999999999975 444455554444 8899999999 999999999999999999987
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
+..+..+.+|. ..+..++|+|++++|++++.||.|++||+.+++.
T Consensus 218 -----------------------------~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 218 -----------------------------KSCVATLEGHM------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp -----------------------------TEEEEEEECCS------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred -----------------------------CcEEEEEcCCC------CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 34455555554 2345667999999999999999999999999999
Q ss_pred EEEeccCCcceeeeEEecCcCe-EEeecCCCeEEEEecCCC
Q 015301 348 VAKLDFHNAPVRDCCWHPIYPM-LISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 348 ~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~ 387 (409)
+..+..|...+.+++|+|+++. +++++.|+.+.+|++...
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 9999999999999999999873 344555778899998654
No 64
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-41 Score=282.89 Aligned_cols=259 Identities=17% Similarity=0.197 Sum_probs=203.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~ 111 (409)
..+.+|.+.|++++|+|+|++||+|+.|++|+||+++.... .......+|...|.+++|+|+ +++|++++.|++|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 35779999999999999999999999999999999975421 122345678889999999874 899999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCee--eeEEcCCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKC--SLRIPAHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v 187 (409)
||+.+++....... ..|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|
T Consensus 82 Wd~~~~~~~~~~~~-------------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 82 WKEENGRWSQIAVH-------------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (297)
T ss_dssp EEBSSSCBCCCEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred EEcCCCceEEEEEe-------------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence 99987643222111 135557999999997 88999999999999999987632 35677899999
Q ss_pred EEEEEeCC------------CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC---CeEEEEeCC
Q 015301 188 NTVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---RYFISNGKD 252 (409)
Q Consensus 188 ~~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d 252 (409)
.+++|+|. ++++|++|+.|+.|++||++...........+.+|...|.+++|+|++ .+|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 99999942 257999999999999999862211122556788999999999999984 799999999
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee--ecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY--KGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
++|++||++...... ....+ ..+. ..+++++|+|++++|++
T Consensus 229 ~~v~iWd~~~~~~~~-------------------------------~~~~~~~~~~~------~~v~~~~~s~~g~~las 271 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPW-------------------------------KKTLLKEEKFP------DVLWRASWSLSGNVLAL 271 (297)
T ss_dssp SCEEEEEESSTTSCC-------------------------------EEEESSSSCCS------SCEEEEEECSSSCCEEE
T ss_pred CcEEEEEeCCCCCcc-------------------------------ceeeeecccCC------CcEEEEEECCCCCEEEE
Confidence 999999987622100 00111 1222 34567789999999999
Q ss_pred EeCCCeEEEEEcc
Q 015301 331 GSSDNSVYIYDLV 343 (409)
Q Consensus 331 ~~~dg~v~i~d~~ 343 (409)
++.||.|++|+..
T Consensus 272 ~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 272 SGGDNKVTLWKEN 284 (297)
T ss_dssp EETTSCEEEEEEC
T ss_pred EcCCCcEEEEEEC
Confidence 9999999999976
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=300.50 Aligned_cols=310 Identities=14% Similarity=0.225 Sum_probs=226.5
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--------eeeeeeccccc------------ceEEEEEeCCC
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--------IQKDIETKALR------------WTITDTSLSPD 96 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--------~~~~~~~~~~~------------~~v~~~~~s~~ 96 (409)
..|.+.|++++|+|+|++||+|+.||.|+||++.++.. ........+|. ..|.+++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 35679999999999999999999999999999987642 11122344565 67999999999
Q ss_pred C--cEEEEEecCCEEEEEEcCCCccccccceece--------------------e-----eeeeeecCCCCcceeeEEEE
Q 015301 97 Q--RFLVYASICAIVNIVDVGSSARESLANVTEI--------------------H-----KGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 97 ~--~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~--------------------~-----~~~~~~~~~~~~~~~v~~~~ 149 (409)
+ ..|++++.|+.|++||+.++........... . ..........+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 7999999999999999976543210000000 0 00000011246788999999
Q ss_pred EcCCCCeEEEEEecCeEEEEECCC-Ceeee-------EEcCCCCCeEEEEEeCCCC-cEEEEeeCCCeEEEecccccccC
Q 015301 150 FSTDGQELVAAGSDNFIYVYDLQA-NKCSL-------RIPAHKSDVNTVCFADETG-HLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 150 ~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
|+|++++|++| .|+.|++||+.+ ++... .+.+|...|.+++|+ |++ ++|++++.||.|++||++.....
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99999999998 799999999984 33333 256899999999999 666 99999999999999998732111
Q ss_pred Cceeeeeecccc------------ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 221 GRANGVLMGHLE------------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 221 ~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
......+..|.. .|.+++|+|++++|++++. +.|++||+++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------------------ 317 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------------------ 317 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------------------------
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------------------------
Confidence 112566666765 8999999999999999998 999999998621
Q ss_pred ceeccccCccceeeeecccceee---------eeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec-------
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRT---------LIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD------- 352 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~------- 352 (409)
..+..+.+|..... .....+.++|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 318 ---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~ 387 (447)
T 3dw8_B 318 ---------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNK 387 (447)
T ss_dssp ---------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCC
T ss_pred ---------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccc
Confidence 22333333331111 00012346899999999999999999999999887753 22
Q ss_pred --------------------------cCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 353 --------------------------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 353 --------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
.+...|..++|+|++++|++++.++ +++|.-
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345788999999999999998775 777764
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.5e-41 Score=285.69 Aligned_cols=293 Identities=15% Similarity=0.195 Sum_probs=219.3
Q ss_pred ceeeEE-----ec-CceeEeeccce---EEEEeeecC-------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 015301 4 GREVNY-----SG-RGRFSAADSCH---VLSRYLPVN-------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVY 67 (409)
Q Consensus 4 ~~~~~~-----s~-dg~~~~~~~~~---~~~~~~~~~-------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw 67 (409)
..+++| ++ |+.++++++.+ .+|...... ....+.+|...|++++|+|++.+|++++.|++|++|
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lw 103 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW 103 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 467888 66 89888886643 455543221 124678999999999999999999999999999999
Q ss_pred EcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEE
Q 015301 68 NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFS 147 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (409)
|+.++..+.. ..+|...|.+++|+|++++|++++.|+.|++||+........ .....|...|.+
T Consensus 104 d~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~-------------~~~~~~~~~v~~ 167 (343)
T 2xzm_R 104 DLRTGTTYKR---FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS-------------AEKENHSDWVSC 167 (343)
T ss_dssp ETTSSCEEEE---EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEEC-------------CTTTSCSSCEEE
T ss_pred ECCCCcEEEE---EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeee-------------ecccCCCceeee
Confidence 9998865544 345777999999999999999999999999999974321111 111245667999
Q ss_pred EEEcCCC----------CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc
Q 015301 148 VKFSTDG----------QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF 217 (409)
Q Consensus 148 ~~~~~~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 217 (409)
++|+|++ .+|++++.|+.|++|| .+.+....+.+|...|.+++|+ |++++|++|+.||.|++||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~- 244 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILN- 244 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSC-
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEEEECCC-
Confidence 9999986 7899999999999999 4567777888999999999999 8999999999999999999741
Q ss_pred ccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCc
Q 015301 218 ISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHD 297 (409)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (409)
....... ..+...|.+++|+|++.++++ +.|+.|++||+.+........... ...
T Consensus 245 --~~~~~~~-~~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~---------------------~~~ 299 (343)
T 2xzm_R 245 --LTYPQRE-FDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEA---------------------EPI 299 (343)
T ss_dssp --CSSCSEE-EECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCC---------------------CSG
T ss_pred --Cccccee-ecCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeec---------------------Ccc
Confidence 2222222 235567999999999987764 567889999998743221000000 000
Q ss_pred cceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 298 QSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.......+|. ..+.+++|+|+|++|++|+.||.|++|++++++
T Consensus 300 ~~~~~~~~~~------~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 300 TKAEGQKGKN------PQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp GGBTTBCCSC------CCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred hhhhhhcCCC------CceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 0001111232 234677899999999999999999999987653
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.6e-41 Score=290.04 Aligned_cols=313 Identities=15% Similarity=0.125 Sum_probs=224.7
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-eeeeecccccceEEEEEeCC--CCcEEEEEecCCEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKI-QKDIETKALRWTITDTSLSP--DQRFLVYASICAIV 109 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 109 (409)
...+.+|.+.|++++|+|++++||+++.||.|++||+.++... .......+|...|.+++|+| ++++|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999876332 22334456788999999999 69999999999999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCeeeeEEc------
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKCSLRIP------ 181 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~------ 181 (409)
++||+.++.......... .......|...|.+++|+|+ +++|++++.|+.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWN------KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp EEEEECTTSCTTSSCSEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred EEEecCCCcccccccCcc------eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 999998765322111000 01111245668999999999 9999999999999999998876544332
Q ss_pred -------CCCCCeEEEEEeCC--CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC----CeEEE
Q 015301 182 -------AHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYFIS 248 (409)
Q Consensus 182 -------~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 248 (409)
.|...+.+++|+|. ++.++++++.++.+.+|+.. .........+.+|...|.+++|+|++ ++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK--DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT--TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC--CCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 68889999999943 38999999999999888754 11223366778899999999999998 89999
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 328 (409)
++.||.|++||++.......... .. ...................
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~----------------------------------~~--~~~~~~~~~~~~~~~~~~~ 279 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEE----------------------------------SL--TNSNMFDNSADVDMDAQGR 279 (351)
T ss_dssp EETTSCEEEEEEEECC----------------------------------------------------------------
T ss_pred EcCCCeEEEEeCCCCcCccccCC----------------------------------cc--cceeccCCCcccccccccc
Confidence 99999999999987432111100 00 0000000011111111122
Q ss_pred EEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 329 YTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 329 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
..+.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 2333455677888888889999999999999999999999999999999999999987543
No 68
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-41 Score=283.80 Aligned_cols=288 Identities=16% Similarity=0.140 Sum_probs=204.8
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCC--Ccee-ec-CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNG--PWKV-DG-MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW--- 73 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~--~~~l-~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--- 73 (409)
..+++|+|+ ++++++.+ .+|....... ...+ .+ |.+.|.+++|+|++++||+|+.|++|+||+++...
T Consensus 17 v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~ 94 (330)
T 2hes_X 17 IWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT 94 (330)
T ss_dssp EEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred eeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc
Confidence 467899988 66654433 3444322111 1234 34 99999999999999999999999999999986431
Q ss_pred -eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEc
Q 015301 74 -KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFS 151 (409)
Q Consensus 74 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (409)
.........+|...|.+++|+|++++|++++.|+.|++||+..... ..... ...+|...|.+++|+
T Consensus 95 ~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~------------~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS------------VLQEHSQDVKHVIWH 162 (330)
T ss_dssp CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE------------EECCCSSCEEEEEEC
T ss_pred ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE------------EeccCCCceEEEEEC
Confidence 1122334567888999999999999999999999999999954321 11100 112456689999999
Q ss_pred CCCCeEEEEEecCeEEEEECCCC--eeeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCC----ce
Q 015301 152 TDGQELVAAGSDNFIYVYDLQAN--KCSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKG----RA 223 (409)
Q Consensus 152 ~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----~~ 223 (409)
|++.+|++++.|+.|++||..++ +++..+.+|...|.+++|+ ++ +.+|++++.|++|++||++...... ..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD-KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEec-CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 99999999999999999999776 5778889999999999999 55 6789999999999999986321111 23
Q ss_pred eeeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce-e
Q 015301 224 NGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-A 301 (409)
Q Consensus 224 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 301 (409)
...+.. |...|.+++|++++ +|++++.||.|++||..+... ... .
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~--------------------------------~~~~~ 288 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW--------------------------------KVFAK 288 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE--------------------------------EEEEE
T ss_pred eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce--------------------------------EEEec
Confidence 333444 88999999999755 899999999999999765210 011 1
Q ss_pred eeecccceeeeeEEEEeeeecC--CCCEEEEEeCCCeEEEEEccC
Q 015301 302 TYKGHSVLRTLIRCYFSPEYST--AQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~v~i~d~~~ 344 (409)
...+|.. ..+..++|+| ++++|++|+.||.|++||+++
T Consensus 289 ~~~~h~~-----~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 289 RALCHGV-----YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ESCTTTT-----SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccccc-----ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 1223331 0234557887 689999999999999999864
No 69
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.9e-41 Score=278.17 Aligned_cols=254 Identities=17% Similarity=0.211 Sum_probs=204.0
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 158 (409)
..+|...|.+++|+|++++||+|+.|+.|++||+.......... ..+|..+|.+++|++ ++++|+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~-------------l~gH~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDT-------------LTGHEGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEE-------------ECCCSSCEEEEEECCGGGCSEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEE-------------EccccCCeEEEEecCCCcCCEEE
Confidence 45688899999999999999999999999999997543211111 125677899999986 388999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
+|+.|++|++||+++++ .+..+..|...|.+++|+ |+ +.+|++++.|+.|++||++.. .......+.+|...|
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~--~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAIGV 148 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSS--SCBCCEEEECCSSCE
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCC--CceeeeeeecccCcc
Confidence 99999999999998874 556678899999999999 54 789999999999999998621 112245677899999
Q ss_pred eEEEEcCC-------------CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 235 TFIDSRRD-------------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 235 ~~~~~~~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
.+++|+|+ +++|++++.|+.|++||+++.... .....
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~------------------------------~~~~~ 198 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLES 198 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE------------------------------EEEEE
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce------------------------------EEEEE
Confidence 99999997 579999999999999998763210 01234
Q ss_pred eeecccceeeeeEEEEeeeecCCC---CEEEEEeCCCeEEEEEccCCc---eEEEe--ccCCcceeeeEEecCcCeEEee
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQ---KYIYTGSSDNSVYIYDLVSGA---QVAKL--DFHNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~v~i~d~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~s~ 373 (409)
.+.+|. ..+.+++|+|++ .+|++++.|++|+|||+.+.. ....+ ..|...|.+++|+|++++|+++
T Consensus 199 ~l~~H~------~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 199 TLEGHS------DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp EECCCS------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EecCCC------CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence 566665 345667889984 899999999999999998753 22233 5678899999999999999999
Q ss_pred cCCCeEEEEecCC
Q 015301 374 SWDCNIVRWEIPG 386 (409)
Q Consensus 374 ~~dg~i~iw~~~~ 386 (409)
+.||.|++|+...
T Consensus 273 ~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 273 GGDNKVTLWKENL 285 (297)
T ss_dssp ETTSCEEEEEECT
T ss_pred cCCCcEEEEEECC
Confidence 9999999999864
No 70
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5e-41 Score=289.06 Aligned_cols=304 Identities=12% Similarity=0.114 Sum_probs=236.8
Q ss_pred ecCCCceeecCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC-CeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 29 PVNGPWKVDGMNSRVYTSQFSND---GSFFVAASQESNIKVYNVDK-NWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 29 ~~~~~~~l~~h~~~v~~~~~s~~---~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
+......+.+|.+.|++++|+|+ |++|++|+.||.|++||+++ +..... ....|...|.+++|+|++++|++++
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEEEc
Confidence 34444577899999999999999 69999999999999999987 433322 2345777999999999999999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE--cCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF--STDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
.||.|++||+.+++..... .|...|.+++| +|++++|++++.|+.|++||+++++.+..+..
T Consensus 106 ~dg~v~iwd~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQIA----------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp TTSEEEEEETTTTEEEEEE----------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred CCCcEEEEEcCCCCceeec----------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 9999999999887643211 24557999999 89999999999999999999999999888886
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCe----EEEEeCCCcEEEe
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY----FISNGKDQTTKLW 258 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iw 258 (409)
+. .+.++.+. ...+++++.++.+++|+++.. ..........+...+.++.+.++... +++++.||.|++|
T Consensus 170 ~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 170 PE-RCYCADVI---YPMAVVATAERGLIVYQLENQ--PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp SS-CEEEEEEE---TTEEEEEEGGGCEEEEECSSS--CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred CC-CceEEEec---CCeeEEEeCCCcEEEEEeccc--cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 64 67777776 347888899999999998621 11111222233445566666655544 9999999999999
Q ss_pred eCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce------eeeeEEEEeeeecCCCCEEEEEe
Q 015301 259 DIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL------RTLIRCYFSPEYSTAQKYIYTGS 332 (409)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~~ 332 (409)
|++..... ..+..+.+|... ......+.+++|+|++++|++++
T Consensus 244 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 244 YINPPNPA-------------------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp ESSCSCHH-------------------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred ecCCCCcc-------------------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 99874210 123333333311 01112456778999999999999
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.||.|++||+.+++++..+.+|..+|++++|+|++++|++++.|+..+.|++...
T Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred cCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 9999999999999999999999999999999999999999999987777776543
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.3e-40 Score=290.16 Aligned_cols=308 Identities=20% Similarity=0.272 Sum_probs=251.1
Q ss_pred EEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc
Q 015301 8 NYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL 84 (409)
Q Consensus 8 ~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~ 84 (409)
+++++|.++++++.. .+|..........+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++.... ..+|
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h 198 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGH 198 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCC
Confidence 355667777765543 455544444456788999999999998 57999999999999999999865544 3467
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN 164 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 164 (409)
...|.++.|+ ++.|++++.||.|++||+.+++...... +|...|.+++| +++++++++.|+
T Consensus 199 ~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------------~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 199 TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM---------------GHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE---------------CCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc---------------CCcccEEEEEE--CCCEEEEEcCCC
Confidence 7799999995 5789999999999999998875432211 34557999999 788999999999
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR 244 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (409)
.|++||+.+++.+..+.+|...|.+++| ++..+++++.||.|++||++ .+.....+.+|...+.++.++ ++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~--~~ 330 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DN 330 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TT
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEEEEEe--CC
Confidence 9999999999999999999999999998 57899999999999999975 677888888999999988874 67
Q ss_pred eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC
Q 015301 245 YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA 324 (409)
Q Consensus 245 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 324 (409)
++++++.||.|++||+++. ..+..+..+.... ..+.++++ +
T Consensus 331 ~l~~~~~dg~i~vwd~~~~----------------------------------~~~~~~~~~~~~~---~~v~~~~~--~ 371 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIKTG----------------------------------QCLQTLQGPNKHQ---SAVTCLQF--N 371 (445)
T ss_dssp EEEEEETTSCEEEEETTTC----------------------------------CEEEEECSTTSCS---SCEEEEEE--C
T ss_pred EEEEEeCCCeEEEEECCCC----------------------------------cEEEEEccCCCCC---CCEEEEEE--C
Confidence 9999999999999999873 3344444421111 12233445 4
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEEe-----ccCCcceeeeEEecCcCeEEeecCCCe----EEEEecCCC
Q 015301 325 QKYIYTGSSDNSVYIYDLVSGAQVAKL-----DFHNAPVRDCCWHPIYPMLISSSWDCN----IVRWEIPGI 387 (409)
Q Consensus 325 ~~~l~~~~~dg~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~----i~iw~~~~~ 387 (409)
+++|++|+.||.|++||+.+++.+..+ ..|.+.|++++|+|++.+|++++.||. |.+||+...
T Consensus 372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 689999999999999999999998888 478899999999999999999999997 999999764
No 72
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.6e-40 Score=276.81 Aligned_cols=277 Identities=19% Similarity=0.317 Sum_probs=226.8
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+.+++|+|||+++++++.. .+|..........+.+|...|.+++|+|++++|++++.|+.|++||++++..+..
T Consensus 26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--- 102 (312)
T 4ery_A 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--- 102 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---
T ss_pred EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE---
Confidence 5789999999988876543 4444433444457889999999999999999999999999999999998865544
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
...|...|.+++|+|++++|++++.|+.|++||+.+++..... ..|..+|.+++|+|++++|+++
T Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---------------PAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe---------------cCCCCcEEEEEEcCCCCEEEEE
Confidence 3456678999999999999999999999999999877543221 1345579999999999999999
Q ss_pred EecCeEEEEECCCCeeeeEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE---
Q 015301 161 GSDNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF--- 236 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--- 236 (409)
+.|+.|++||+.+++.+..+ ..+...+..++|+ +++++|++++.||.|++||++ .+.....+.+|......
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~ 242 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKNEKYCIFA 242 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETT----TTEEEEEECSSCCSSSCCCE
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEEecCCceEEEEE
Confidence 99999999999999887766 4567789999999 899999999999999999975 66777777777655332
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
....+++.+|++++.||.|++||+++ ...+..+.+|.. .+
T Consensus 243 ~~~~~~~~~l~sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~------~v 282 (312)
T 4ery_A 243 NFSVTGGKWIVSGSEDNLVYIWNLQT----------------------------------KEIVQKLQGHTD------VV 282 (312)
T ss_dssp EEECSSSCEEEECCTTSCEEEEETTT----------------------------------CCEEEEECCCSS------CE
T ss_pred EEEeCCCcEEEEECCCCEEEEEECCC----------------------------------chhhhhhhccCC------cE
Confidence 23346788999999999999999987 345666777763 34
Q ss_pred EeeeecCCCCEEEEEe--CCCeEEEEEcc
Q 015301 317 FSPEYSTAQKYIYTGS--SDNSVYIYDLV 343 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~--~dg~v~i~d~~ 343 (409)
.+++++|++++|++++ .|+.|++|+..
T Consensus 283 ~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 283 ISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEeecCcCCceEEEEccCCccEEEecCC
Confidence 5668999999999987 69999999864
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.4e-40 Score=292.60 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=238.1
Q ss_pred ceeecCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+.+|.+.| .++.| ++++|++|+.||+|++||+.+++.+.. ..+|...|.+++|+|++ .|++|+.||.|++|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4788999885 66666 568999999999999999998865544 44677899999999988 99999999999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc--CCCCeEEEEEecCeEEEEECCCCee--------------
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGSDNFIYVYDLQANKC-------------- 176 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~~~-------------- 176 (409)
|+.+++..... .+|...|.+++|+ ++++++++++.|+.|++||+.++..
T Consensus 189 d~~~~~~~~~~---------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 189 DIKKGCCTHVF---------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp ETTTTEEEEEE---------------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred ECCCCcEEEEE---------------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 99887643221 1355679999998 5788999999999999999987653
Q ss_pred ---------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEE
Q 015301 177 ---------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 177 ---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
+..+.+|...|.++. ++++++++++.||.|++||++ ....+..+.+|...|.+++|+|++++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 326 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRCI 326 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred eccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEEE
Confidence 445678888888884 568899999999999999975 7788888899999999999999999999
Q ss_pred EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCE
Q 015301 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 327 (409)
Q Consensus 248 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 327 (409)
+++.||.|++||+++ +..+..+.+|... +..+.++ +++
T Consensus 327 sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~------v~~~~~~--~~~ 364 (464)
T 3v7d_B 327 SASMDTTIRIWDLEN----------------------------------GELMYTLQGHTAL------VGLLRLS--DKF 364 (464)
T ss_dssp EEETTSCEEEEETTT----------------------------------TEEEEEECCCSSC------EEEEEEC--SSE
T ss_pred EEeCCCcEEEEECCC----------------------------------CcEEEEEeCCCCc------EEEEEEc--CCE
Confidence 999999999999987 4556666666633 2333444 689
Q ss_pred EEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
|++++.||.|++||+.+++...... |...+..++|++++++|++++ ||.|++||+.+++..
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred EEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 9999999999999999988776664 677888899999999999998 899999999887654
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.3e-40 Score=290.74 Aligned_cols=277 Identities=24% Similarity=0.330 Sum_probs=228.8
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
.+|...|+|++| ++++|++|+.||.|++||+.+++.... ..+|...|.+++| ++++|++|+.||.|++||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE---EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 356778999887 789999999999999999998865544 4467779999999 788999999999999999988
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeee---eEEcCCCCCeEEEEEe
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCS---LRIPAHKSDVNTVCFA 193 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~ 193 (409)
++..... ..|...|.+++|+ +..+++|+.||.|++||+.+++.. ..+.+|...|.+++|.
T Consensus 203 ~~~~~~~---------------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 265 (435)
T 1p22_A 203 GEMLNTL---------------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 265 (435)
T ss_dssp CCEEEEE---------------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred CcEEEEE---------------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC
Confidence 7643221 1345579999996 458999999999999999887765 5678899999999994
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
++++++++.||.|++||++ .+..+..+.+|...|.++.++ ++++++++.||.|++||+++
T Consensus 266 ---~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~----------- 325 (435)
T 1p22_A 266 ---DKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC----------- 325 (435)
T ss_dssp ---TTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-----------
T ss_pred ---CCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC-----------
Confidence 7899999999999999975 678888899999999999994 78999999999999999987
Q ss_pred cccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc-------
Q 015301 274 RDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA------- 346 (409)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~------- 346 (409)
+..+..+.+|... +.++++ ++++|++|+.||.|++||+.+++
T Consensus 326 -----------------------~~~~~~~~~h~~~------v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 374 (435)
T 1p22_A 326 -----------------------GACLRVLEGHEEL------VRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAG 374 (435)
T ss_dssp -----------------------CCEEEEECCCSSC------EEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred -----------------------CCEEEEEeCCcCc------EEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccccc
Confidence 3455666666532 223344 68999999999999999998776
Q ss_pred --eEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 347 --QVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 347 --~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+..+.+|.+.|++++| ++++|++++.||.|++||+.+....
T Consensus 375 ~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 375 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 88899999999999999 7789999999999999999876544
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.6e-40 Score=313.59 Aligned_cols=321 Identities=16% Similarity=0.199 Sum_probs=246.2
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
...+++|||||.+++++... .+|..........+.+|.++|++++|+|++++|++++.||.|++||+.++..+...
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~- 93 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF- 93 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-
Confidence 35789999999998886543 34443333344578899999999999999999999999999999999988665543
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 158 (409)
..|...|.+++|+|++++|++++.||.|++||+.++..... .. .+|...|.+++|+| ++..|+
T Consensus 94 --~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~------------~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 94 --EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--TF------------EGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp --ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE--EE------------ECCSSCEEEEEEETTEEEEEE
T ss_pred --ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE--EE------------cCCCCcEEEEEEEcCCCCEEE
Confidence 45667899999999999999999999999999976522111 00 13455799999999 889999
Q ss_pred EEEecCeEEEEECCCCeeeeEEcCCC-CCeEEEEEeC-CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPAHK-SDVNTVCFAD-ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+++.||.|++||+.+++....+..+. ..+.+++|+| +++.+|++++.||.|++||++ .+.....+.+|...|.+
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~ 233 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSF 233 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCSSCEEE
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCCCCEEE
Confidence 99999999999999888877776554 8999999993 288999999999999999975 67778888899999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
++|+|+++++++++.||.|++||+.+.. .+..+..+. ..+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~----------------------------------~~~~~~~~~------~~v 273 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYK----------------------------------VEKTLNVGL------ERS 273 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCS----------------------------------EEEEECCSS------SSE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------------EEEEeecCC------CcE
Confidence 9999999999999999999999998733 233333332 123
Q ss_pred EeeeecCCCC--EEEEEeCCCeEEEEEccCCceE-------------------------------------------EEe
Q 015301 317 FSPEYSTAQK--YIYTGSSDNSVYIYDLVSGAQV-------------------------------------------AKL 351 (409)
Q Consensus 317 ~~~~~s~~~~--~l~~~~~dg~v~i~d~~~~~~~-------------------------------------------~~~ 351 (409)
++++++|++. +++++ .++.+.+|++...... ..+
T Consensus 274 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (814)
T 3mkq_A 274 WCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL 352 (814)
T ss_dssp EEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEE
T ss_pred EEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecC
Confidence 3445666654 23333 3444666665432111 112
Q ss_pred ccCCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 352 DFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 352 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
..+...+.+++|+|++++|++++ ||.+.+|++..
T Consensus 353 ~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 353 GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred CCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 23455678888888888888887 78888888754
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-39 Score=288.37 Aligned_cols=319 Identities=15% Similarity=0.227 Sum_probs=245.2
Q ss_pred ecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc
Q 015301 10 SGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW 86 (409)
Q Consensus 10 s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 86 (409)
++++.++++++. ..+|..........+.+|.+.|++++|+|++ +|++|+.||+|++||++++..... ..+|..
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~ 204 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNS 204 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSS
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCC
Confidence 335556666443 3455544444455788999999999999988 999999999999999998865544 445777
Q ss_pred eEEEEEeC--CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeee--------eeecCCCCcceeeEEEEEcCCCCe
Q 015301 87 TITDTSLS--PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGL--------DFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 87 ~v~~~~~s--~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.|.+++|+ +++++|++++.|+.|++||+.+................ .+.....+|...+.++ ++++++
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~ 282 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI 282 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE
Confidence 99999998 57899999999999999999877543221111000000 0111123456667776 568899
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+++++.|+.|++||+.+++.+..+.+|...|.+++|+ ++++++++++.||.|++||++ .+..+..+.+|...|.+
T Consensus 283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGL 357 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCcEEEEEeCCCCcEEE
Confidence 9999999999999999999999999999999999999 899999999999999999975 77888899999999999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEE
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCY 316 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (409)
+.|+ +.+|++++.||.|++||+++... ..... +.. ..
T Consensus 358 ~~~~--~~~l~s~s~dg~v~vwd~~~~~~----------------------------------~~~~~-~~~------~~ 394 (464)
T 3v7d_B 358 LRLS--DKFLVSAAADGSIRGWDANDYSR----------------------------------KFSYH-HTN------LS 394 (464)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTCCE----------------------------------EEEEE-CTT------CC
T ss_pred EEEc--CCEEEEEeCCCcEEEEECCCCce----------------------------------eeeec-CCC------Cc
Confidence 9997 57999999999999999987321 11111 111 11
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE-eccCCcceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
...++++++++|++|+ ||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 395 ~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 395 AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 2335778899999998 89999999999999886 67789999999997 3456666777887666543
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.5e-41 Score=283.67 Aligned_cols=259 Identities=17% Similarity=0.147 Sum_probs=198.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~~ 111 (409)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ......+|...|.+++|+| ++++|++++.|+.|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 356799999999999999999999999999999999876432 2234567888999999986 4899999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCee---eeEEcCCCCC
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANKC---SLRIPAHKSD 186 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~ 186 (409)
||+.++........ .+|...|.+++|+|+ +.+|++|+.|+.|++||+.++.. ...+.+|...
T Consensus 86 Wd~~~~~~~~~~~~-------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 86 WREENGTWEKSHEH-------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp ECCSSSCCCEEEEE-------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred EECCCCcceEEEEc-------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 99987642211111 245668999999997 78999999999999999987632 3445789999
Q ss_pred eEEEEEeCCC----------------CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC----CeE
Q 015301 187 VNTVCFADET----------------GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG----RYF 246 (409)
Q Consensus 187 v~~~~~~~~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l 246 (409)
|.+++|+|.. +.+|++|+.|+.|++||++.. ........+.+|...|.+++|+|++ .+|
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 9999999431 468999999999999997410 0114566788999999999999986 789
Q ss_pred EEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 247 ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
++++.|++|++||++...... .....+..|. ..+++++|+|+++
T Consensus 232 as~s~D~~v~iw~~~~~~~~~------------------------------~~~~~~~~~~------~~v~~v~~sp~g~ 275 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNT------------------------------WSPKLLHKFN------DVVWHVSWSITAN 275 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCC------------------------------CBCCEEEECS------SCEEEEEECTTTC
T ss_pred EEEcCCCeEEEEEccCccccc------------------------------hhhhhhhcCC------CcEEEEEEcCCCC
Confidence 999999999999987621100 0011222232 3456778999999
Q ss_pred EEEEEeCCCeEEEEEcc
Q 015301 327 YIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~ 343 (409)
+|++++.|+.|++|+..
T Consensus 276 ~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEEC
Confidence 99999999999999975
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=279.80 Aligned_cols=264 Identities=17% Similarity=0.194 Sum_probs=210.4
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVN 110 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~ 110 (409)
...+.+|.+.|++++|+|++++||+|+.||.|+||++.... .........|...|.+++|+|+ +++|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 45789999999999999999999999999999999997542 2233345667889999999987 89999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCe--eeeEEcCCCCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSD 186 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~ 186 (409)
+||+.+++....... ..|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+..|...
T Consensus 83 iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 83 IWKEENGRWSQIAVH-------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp EEEEETTEEEEEEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred EEEcCCCceeEeeee-------------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 999988753222111 134557999999999 9999999999999999998873 34456789999
Q ss_pred eEEEEEeCC------------CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC---CCeEEEEeC
Q 015301 187 VNTVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---GRYFISNGK 251 (409)
Q Consensus 187 v~~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~ 251 (409)
|.+++|+|. ++.+|++++.||.|++||++...........+.+|...|.+++|+|+ +++|++++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 999999943 68999999999999999987433333455677889999999999999 899999999
Q ss_pred CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE
Q 015301 252 DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG 331 (409)
Q Consensus 252 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 331 (409)
||.|++||++....... ..+.....+. ..+.+++|+|++++|+++
T Consensus 230 dg~i~iwd~~~~~~~~~-----------------------------~~~~~~~~~~------~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWK-----------------------------KTLLKEEKFP------DVLWRASWSLSGNVLALS 274 (379)
T ss_dssp TSCEEEEEESSTTSCCE-----------------------------EEESSSSCCS------SCEEEEEECSSSCCEEEE
T ss_pred CCEEEEEeCCCCCccce-----------------------------eeeeccccCC------CcEEEEEEcCCCCEEEEe
Confidence 99999999987421100 0011111122 235567899999999999
Q ss_pred eCCCeEEEEEccCC
Q 015301 332 SSDNSVYIYDLVSG 345 (409)
Q Consensus 332 ~~dg~v~i~d~~~~ 345 (409)
+.||.|++|++...
T Consensus 275 ~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 275 GGDNKVTLWKENLE 288 (379)
T ss_dssp ESSSSEEEEEEEET
T ss_pred cCCCcEEEEeCCCC
Confidence 99999999998743
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.3e-39 Score=283.16 Aligned_cols=281 Identities=19% Similarity=0.316 Sum_probs=235.4
Q ss_pred CCceeecCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEE
Q 015301 32 GPWKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVN 110 (409)
Q Consensus 32 ~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 110 (409)
....+.+|.+.| .|+ +++|++|++|+.||+|++||+.++..+.. ..+|...|.+++|+ +++|++++.||.|+
T Consensus 110 ~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIISGSTDRTLK 182 (445)
T ss_dssp CCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred eeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence 345788999875 554 45689999999999999999998865544 45677899999997 56999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+||+.+++..... .+|...|.+++|+ ++.+++++.||.|++||+.+++.+..+.+|...|.++
T Consensus 183 vwd~~~~~~~~~~---------------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 183 VWNAETGECIHTL---------------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEETTTTEEEEEE---------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EEECCcCcEEEEE---------------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 9999887543221 1455579999995 5679999999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
++ +++++++++.||.|++||++ .+.....+.+|...|.++.| ++.++++++.||.|++||+++
T Consensus 246 ~~---~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-------- 308 (445)
T 2ovr_B 246 QY---DGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-------- 308 (445)
T ss_dssp EE---CSSCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------
T ss_pred EE---CCCEEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------
Confidence 98 47789999999999999975 67788888899999999999 788999999999999999987
Q ss_pred ccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 350 (409)
+..+..+.+|..... . +++++++|++|+.||.|++||+.+++.+..
T Consensus 309 --------------------------~~~~~~~~~~~~~v~------~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 309 --------------------------GNCIHTLTGHQSLTS------G--MELKDNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp --------------------------CCEEEEECCCCSCEE------E--EEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --------------------------CCEEEEEcCCcccEE------E--EEEeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 344555555543221 1 223578999999999999999999999999
Q ss_pred ecc---CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 351 LDF---HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 351 ~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+.. |...|++++|+ +++|++++.||.|++||+.+++.
T Consensus 355 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 355 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 986 88899999995 57999999999999999987654
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-39 Score=276.19 Aligned_cols=297 Identities=13% Similarity=0.098 Sum_probs=237.5
Q ss_pred cceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+.+++|||||+++++++. ..+|..........+.+|.+.|.+++|+|++++|++++.||.|++||+.++.......
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 113 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK 113 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence 3678999999998887553 3455544445556788999999999999999999999999999999999886655433
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
+...|.+++|+|++++|++++.+ +.|++||+...................+.. ......+.+++|+|++
T Consensus 114 ----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 114 ----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT--HEGLDAATVAGWSTKG 187 (369)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC--CTTCCCEEEEEECGGG
T ss_pred ----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC--CcCccceeEEEEcCCC
Confidence 45589999999999999999998 999999998765433222211111000110 1112269999999999
Q ss_pred CeEEEEEecCeEEEEECCC-CeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc
Q 015301 155 QELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG 233 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 233 (409)
++|++++.||.|++||+.+ .+.+..+..|...|.+++|+ +++++|++++.||.|++||++ .......+. +...
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVS----TLQVLKKYE-TDCP 261 (369)
T ss_dssp CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEE-CSSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECC----CCceeeeec-CCCC
Confidence 9999999999999999998 78888899999999999999 799999999999999999975 556666555 7788
Q ss_pred eeEEEEcCCCCeEEEEeCCC--------------cEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 234 ITFIDSRRDGRYFISNGKDQ--------------TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
+..++|+|+++++++++.++ .+++||+.+ ...
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------------------------------~~~ 307 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF----------------------------------EEE 307 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTT----------------------------------CCE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC----------------------------------Ccc
Confidence 99999999999999999988 788888876 445
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
+..+.+|. ..+.+++|+|++++|++++.||.|++|+++++.....+
T Consensus 308 ~~~~~~~~------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 308 IGRVQGHF------GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp EEEEECCS------SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred hhheeccc------CcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 56666665 33556789999999999999999999999876554433
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-39 Score=280.06 Aligned_cols=241 Identities=12% Similarity=0.062 Sum_probs=200.7
Q ss_pred ceeeEEecCceeEeeccce---EEEEeeecC--CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCH---VLSRYLPVN--GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~---~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
+.+++|+|||+++++++.. .++...... ....+.+|...|.+++|+|++++|++++.||.|++||++++... ..
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~ 89 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-PT 89 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-EE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-ee
Confidence 5789999999988876433 344433322 45678899999999999999999999999999999999887433 33
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
.....|...|.+++|+|++++|++++.|+.|++||+........... ....|...|.+++|+|++++|+
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-----------IKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-----------ECTTCCSCEEEEEECTTSSEEE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee-----------eecccCCCeeEEEEcCCCCEEE
Confidence 33455777899999999999999999999999999987653211111 0123455799999999999999
Q ss_pred EEEecCeEEEEEC------------------CCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 159 AAGSDNFIYVYDL------------------QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 159 ~~~~d~~i~v~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
+++.|+.|++||+ ..++.+..+..|...|.+++|+ +++++|++++.||.|++||++ .
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~----~ 233 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADAD----K 233 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGG----G
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECC----C
Confidence 9999999999995 4677888888999999999999 889999999999999999976 6
Q ss_pred CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 221 GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+..+..+..|..+|.+++|+|++.+++++ .|+.|++|+++.
T Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 77888888999999999999999988877 899999999987
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-40 Score=278.34 Aligned_cols=255 Identities=20% Similarity=0.206 Sum_probs=199.5
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--CCCeEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--DGQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 158 (409)
..+|...|++++|+|++++|++|+.|+.|++||+.++....... ..+|..+|.+++|++ ++++|+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~-------------l~gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-------------LRGHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE-------------EECCSSCEEEEEECCGGGSSCEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE-------------EcCCCccEEEEEeCCCCCCCEEE
Confidence 34688899999999999999999999999999997764221111 125667899999986 489999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCC-CCcEEEEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
+++.|+.|++||+++++ ....+.+|...|.+++|+|. ++.+|++++.|+.|++||++... .......+.+|...+.
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCN 154 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcc
Confidence 99999999999998874 55677889999999999943 27899999999999999976210 0112345678899999
Q ss_pred EEEEcCC-----------------CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 236 FIDSRRD-----------------GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 236 ~~~~~~~-----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
+++|+|+ +++|++++.|+.|++||++.... ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-------------------------------~~ 203 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-------------------------------WK 203 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-------------------------------EE
T ss_pred eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-------------------------------cc
Confidence 9999997 47899999999999999864210 02
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCC----CEEEEEeCCCeEEEEEccCCc----eEEEeccCCcceeeeEEecCcCeE
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQ----KYIYTGSSDNSVYIYDLVSGA----QVAKLDFHNAPVRDCCWHPIYPML 370 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l 370 (409)
.+..+.+|.. .+.+++|+|++ ++|++++.|++|++|++.+.. ....+..|...|.+++|+|++++|
T Consensus 204 ~~~~l~~h~~------~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 277 (316)
T 3bg1_A 204 EEQKLEAHSD------WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANIL 277 (316)
T ss_dssp EEECCBCCSS------CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCE
T ss_pred eeeecccCCC------ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEE
Confidence 3445566652 34566788876 899999999999999997631 233456788999999999999999
Q ss_pred EeecCCCeEEEEecCC
Q 015301 371 ISSSWDCNIVRWEIPG 386 (409)
Q Consensus 371 ~s~~~dg~i~iw~~~~ 386 (409)
++++.||.|++|+...
T Consensus 278 as~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 278 AVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEESSSCEEEEEECT
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999999864
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.8e-39 Score=297.16 Aligned_cols=297 Identities=17% Similarity=0.243 Sum_probs=222.4
Q ss_pred ceeeEEecCc-eeEeeccce---EEEEeeecCC-----CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRG-RFSAADSCH---VLSRYLPVNG-----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~~~~---~~~~~~~~~~-----~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
..+++++|++ .++++++.+ .+|.+..... ...+.+|...|.+++|+|++++|++|+.||+|+|||+.++..
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~ 464 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS 464 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 5789999875 677766544 3444332221 246889999999999999999999999999999999998865
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
... ..+|...|.+++|+|++++|++++.|+.|++||........ ......+|...|.+++|+|++
T Consensus 465 ~~~---~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~------------~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 465 TRR---FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT------------ISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE------------ECSSTTSCSSCEEEEEECSCS
T ss_pred eeE---EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee------------eccCCCCCCCcEEEEEEeCCC
Confidence 544 34677799999999999999999999999999975442211 122234567789999999986
Q ss_pred --CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 155 --QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 155 --~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
..|++++.|+.|++||+.+++....+.+|...|++++|+ +++++|++++.||.|++||++ .+..+..+. +..
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~----~~~~~~~~~-~~~ 603 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLA----EGKKLYSLE-ANS 603 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETT----TTEEEECCB-CSS
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCceEEEec-CCC
Confidence 579999999999999999999999999999999999999 899999999999999999975 556665554 456
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
.+.+++|+|++.++++++ ++.|++||+++............... ......++......
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 661 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA---------------------EKADNSGPAATKRK 661 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------------------------------C
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc---------------------ccccccccccCCce
Confidence 799999999988777665 56699999988543322211000000 00000000000011
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
...+.+++|+|+|++|++|+.||.|+||++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1124567899999999999999999999985
No 84
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.8e-39 Score=282.33 Aligned_cols=297 Identities=15% Similarity=0.179 Sum_probs=231.4
Q ss_pred CCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeee-eeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCC
Q 015301 40 NSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKI-QKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~ 116 (409)
......++++|+...++ +++.||.|+||++...... .......+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 34456788999876544 5788999999999765433 22334567888999999999 899999999999999999988
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEE--cCCCCCeEEEEEe
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFA 193 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~ 193 (409)
+......... .. ...+|...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+ ..|...|.+++|+
T Consensus 114 ~~~~~~~~~~--~~------~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 114 GGLVLPLREP--VI------TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp TCCSSCBCSC--SE------EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred CCCccccCCc--eE------EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 7432111000 00 001456689999999998 69999999999999999999999999 8899999999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccc-eeEEEEcCCCCeEEEE---eCCCcEEEeeCCCCccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEG-ITFIDSRRDGRYFISN---GKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~ 268 (409)
+++++|++++.||.|++||++ .+.....+ ..|.+. +..+.|+|++++|+++ +.|+.|++||+++....
T Consensus 186 -~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-- 258 (402)
T 2aq5_A 186 -RDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-- 258 (402)
T ss_dssp -TTSSCEEEEETTSEEEEEETT----TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC--
T ss_pred -CCCCEEEEEecCCcEEEEeCC----CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC--
Confidence 799999999999999999976 56677776 677765 8999999999999998 78999999999874321
Q ss_pred ccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecCCCCEEEE-EeCCCeEEEEEccCCc
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYT-GSSDNSVYIYDLVSGA 346 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~ 346 (409)
+.... .+. ..+..++|+|++++|++ |+.||.|++||+.+++
T Consensus 259 -------------------------------~~~~~~~~~------~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 259 -------------------------------LSLQELDTS------SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp -------------------------------SEEEECCCC------SSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred -------------------------------ceEEeccCC------CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 11111 111 12345679999999965 5579999999999987
Q ss_pred e-EEEecc--CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 347 Q-VAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 347 ~-~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
. +..+.. |..+|.+++|+|++.++++ .|+.+++|++.+....
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 302 PFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp TCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred cceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 4 445544 5589999999999998775 4669999999875443
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.6e-40 Score=279.08 Aligned_cols=282 Identities=13% Similarity=0.134 Sum_probs=211.1
Q ss_pred ceeeEEecCceeEeeccc----------eEEEEeeecCCC----------ceeecCCCCeEEEEECCCCCEEEEE-----
Q 015301 4 GREVNYSGRGRFSAADSC----------HVLSRYLPVNGP----------WKVDGMNSRVYTSQFSNDGSFFVAA----- 58 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~----------~~~~~~~~~~~~----------~~l~~h~~~v~~~~~s~~~~~l~t~----- 58 (409)
..+++|+|||+++++++. ..+|...+.... ..|.+|...|.+++++ ++.+++|
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~ 94 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS 94 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence 468999999999998642 234444333222 2467899999998775 4566665
Q ss_pred ------eCCCcEEEEEcCCCeeeeee------eecccccceEEEEEeCCCCcEEEEEe--cCCEEEEEEcCCCccccccc
Q 015301 59 ------SQESNIKVYNVDKNWKIQKD------IETKALRWTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 59 ------~~d~~i~vw~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~ 124 (409)
+.|+++++|++......... .....+...+.+++|+|||++|++++ .|+.|++||+.+++......
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~ 174 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE 174 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC
Confidence 45788999998765322211 11223344689999999999987654 68999999998876533221
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~ 202 (409)
|...|.+++|+|+|+++++++. +.+.+|+..+++.+.. ...|...|.+++|+ |++.++++
T Consensus 175 ----------------~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~ 236 (365)
T 4h5i_A 175 ----------------TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFI-ADDTVLIA 236 (365)
T ss_dssp ----------------CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEE-ETTEEEEE
T ss_pred ----------------CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEc-CCCCEEEE
Confidence 2336999999999999999875 4577777777766543 35688899999999 89999999
Q ss_pred eeCCC----eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 203 GSDDS----LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 203 ~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
++.|+ .+++|++............+.+|...|++++|+|+|++|++|+.|+.|+|||+++
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~---------------- 300 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD---------------- 300 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT----------------
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC----------------
Confidence 98887 6888987532222233456778999999999999999999999999999999987
Q ss_pred ccccccccccceeccccCccceeee-ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATY-KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
++.+..+ .+|. ..+.+++|||||++||+|+.|++|+|||+...
T Consensus 301 ------------------~~~~~~~~~gH~------~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 301 ------------------LSMSKIFKQAHS------FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ------------------TEEEEEETTSSS------SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ------------------CcEEEEecCccc------CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3445543 5676 34567799999999999999999999999643
No 86
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.8e-38 Score=268.92 Aligned_cols=288 Identities=16% Similarity=0.237 Sum_probs=222.3
Q ss_pred ceeeEEecC-ceeEeeccc---eEEEEeeecCC-----CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGR-GRFSAADSC---HVLSRYLPVNG-----PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~d-g~~~~~~~~---~~~~~~~~~~~-----~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
+.+|+|+|+ ++++++++. ..+|++..... ...+.+|...|.+++|+|+|++|++++.|+.|++|+......
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~ 120 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT 120 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce
Confidence 578999998 578877554 45666544332 246789999999999999999999999999999999998855
Q ss_pred eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC
Q 015301 75 IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG 154 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (409)
...... +...+..+.+++++++|++++.|+.+++||+........ ....|...+..++|++++
T Consensus 121 ~~~~~~---~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 121 TRRFVG---HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV--------------QDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EEEEEC---CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE--------------CSSSCSSCEEEEEECSCS
T ss_pred eeeecC---CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE--------------EeccccCcccceEEccCC
Confidence 544333 344788899999999999999999999999876543211 112455579999998864
Q ss_pred --CeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 155 --QELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 155 --~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
.++++++.|+.|++||+.+++.+..+.+|...|++++|+ |++++|++++.||.|++||++ ....+..+. +..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~----~~~~~~~~~-~~~ 257 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLN----EGKHLYTLD-GGD 257 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETT----TTEEEEEEE-CSS
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEec----cCceeeeec-CCc
Confidence 567889999999999999999999999999999999999 899999999999999999975 566666665 456
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 233 GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
.+.++.|+|++. +++++.|+.|++||++.......... ........+|.
T Consensus 258 ~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~~~h~----- 306 (340)
T 4aow_A 258 IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQ-------------------------EVISTSSKAEP----- 306 (340)
T ss_dssp CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECC-------------------------C-------CCC-----
T ss_pred eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccc-------------------------cceeeeccCCC-----
Confidence 899999999875 56677899999999987432211110 00111122232
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+.+++|+|++++|++|+.||.|+|||+++|+
T Consensus 307 -~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 307 -PQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -CCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 345667899999999999999999999999885
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.6e-39 Score=278.33 Aligned_cols=314 Identities=13% Similarity=0.090 Sum_probs=225.4
Q ss_pred cceeeEEecCceeEeecc---ceEEEEeeecC------CCceeecCCCCeEEEEECCC----C---CEEEEEeCCCcEEE
Q 015301 3 VGREVNYSGRGRFSAADS---CHVLSRYLPVN------GPWKVDGMNSRVYTSQFSND----G---SFFVAASQESNIKV 66 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~---~~~~~~~~~~~------~~~~l~~h~~~v~~~~~s~~----~---~~l~t~~~d~~i~v 66 (409)
.+.+++|+| .++++++ ...+|...... ....+.+|...|++++|+|+ + ++|++++.||.|++
T Consensus 18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 357899999 4444433 33455544444 35678899999999999999 9 99999999999999
Q ss_pred EEcCCCee-----eeeeeecccc--cceEEEEEeC----CCCcE-EEEEecCCEEEEEEcCC------Cccccccceece
Q 015301 67 YNVDKNWK-----IQKDIETKAL--RWTITDTSLS----PDQRF-LVYASICAIVNIVDVGS------SARESLANVTEI 128 (409)
Q Consensus 67 w~~~~~~~-----~~~~~~~~~~--~~~v~~~~~s----~~~~~-l~~~~~dg~i~~w~~~~------~~~~~~~~~~~~ 128 (409)
|++.++.. .........+ ...|.+++|+ |++++ |++++.||.|++||+.+ ++..........
T Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (397)
T 1sq9_A 96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 175 (397)
T ss_dssp EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence 99987754 3333222212 4689999999 99999 99999999999999987 433221100000
Q ss_pred eeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC---C---CCCeEEEEEeCCCCcEEEE
Q 015301 129 HKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA---H---KSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~ 202 (409)
.. .......|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+ +++++|++
T Consensus 176 ~~---~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~~ 250 (397)
T 1sq9_A 176 QG---TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAI 250 (397)
T ss_dssp EE---EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEE
T ss_pred ee---eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEEE
Confidence 00 000112355679999999999 999999999999999999999999988 9 9999999999 78999999
Q ss_pred eeCC---CeEEEecccccccCCceeeeeec-------------cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 203 GSDD---SLCKVWDRRCFISKGRANGVLMG-------------HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 203 ~~~d---g~i~iwd~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
++.| |.|++||++ ....+..+.. |...|.+++|+|++++|++++.||.|++||+++....
T Consensus 251 ~~~d~~~g~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 251 AHDSNSFGCITLYETE----FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEETTEEEEEEEETT----TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EecCCCCceEEEEECC----CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 9999 999999976 6677778887 9999999999999999999999999999999874332
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC----------CEEEEEeCCCe
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ----------KYIYTGSSDNS 336 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----------~~l~~~~~dg~ 336 (409)
............. . ....+ .......|. ..+.+++|+|++ ++|++++.||.
T Consensus 327 ~~~~~~~~~~~~~-------~-----~~~~g-~~~~~~~~~------~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 327 TTLNMHCDDIEIE-------E-----DILAV-DEHGDSLAE------PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp EEEECCGGGCSSG-------G-----GCCCB-CTTSCBCSS------CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred EEEecccCcccch-------h-----hhhcc-ccccccccC------CceeEEEeccccccccccccccceEEEecCCCc
Confidence 2111000000000 0 00000 000001112 345677899998 79999999999
Q ss_pred EEEEEccCCc
Q 015301 337 VYIYDLVSGA 346 (409)
Q Consensus 337 v~i~d~~~~~ 346 (409)
|++|++.+++
T Consensus 388 i~iw~~~~g~ 397 (397)
T 1sq9_A 388 IRWFREAGGK 397 (397)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-40 Score=283.42 Aligned_cols=240 Identities=12% Similarity=0.044 Sum_probs=187.0
Q ss_pred ceeeEEecCceeEeeccc---eEEEEeeec--CCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSC---HVLSRYLPV--NGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~---~~~~~~~~~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
+.+++|||||+++++++. ..++..... .....+.+|.+.|++++|+|++++|++++.|++|++||+.++......
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 578999999999887643 345555443 445678899999999999999999999999999999999987523334
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
.....|...|.+++|+|++++|++++.|+.|++||+.+++......... ..|...|.+++|+|++++|+
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-----------RPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-----------SSCCSCEEEEEECTTSSEEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-----------cccCCCeEEEEEcCCCCEEE
Confidence 4456678899999999999999999999999999998775311111111 12556899999999999999
Q ss_pred EEEecCeEEEEECC------------------CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC
Q 015301 159 AAGSDNFIYVYDLQ------------------ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK 220 (409)
Q Consensus 159 ~~~~d~~i~v~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 220 (409)
+++.|+.|++||+. .++++..+ .|...|.+++|+ |++++|++++.||.|++||++ .
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~----~ 236 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPS----A 236 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEEC----S
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECC----C
Confidence 99999999999985 34455556 899999999999 899999999999999999976 4
Q ss_pred Cce----eeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 221 GRA----NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 221 ~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+.. +..+.+|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 444 77888999999999999999999988766655 66665
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-40 Score=289.25 Aligned_cols=271 Identities=11% Similarity=0.035 Sum_probs=201.3
Q ss_pred ecCCCCeEEEEECCCC---------CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC
Q 015301 37 DGMNSRVYTSQFSNDG---------SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA 107 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~---------~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 107 (409)
..+.+.|.+++|+|++ ++||+|+.++.. . ..+|+++.+++++.|+
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------~--------~~~~~~~~laS~s~D~ 183 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------E--------PLNEHLEMFDKEKHSS 183 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CE
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------C--------ccchhhhhhccCCCCc
Confidence 3478999999999987 799999866420 0 1368999999999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC------CCeEEEEEecCeEEEEECCCCee-----
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD------GQELVAAGSDNFIYVYDLQANKC----- 176 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~v~d~~~~~~----- 176 (409)
.|+||++.+++........ + ..|...|.+++|+|+ +.+|++++.||+|++||+.+++.
T Consensus 184 tI~iWd~~~~~~~~~~~~~-------l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQT-------I----VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp EEEEEEEETTTCCEEEEEE-------E----EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred eEEEEEccCCCCCceEEEE-------E----EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 9999999776532110000 0 023346999999996 57999999999999999976642
Q ss_pred ------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE--EEcCCC-CeEE
Q 015301 177 ------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI--DSRRDG-RYFI 247 (409)
Q Consensus 177 ------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~ 247 (409)
...+.+|...|++++|+ ++ ..|++|+.||+|++||++. ...+...+.+|...|.++ .|+|++ .+|+
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s-~~-~~lasgs~DgtV~lWD~~~---~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFL-SP-TTVVCGFKNGFVAEFDLTD---PEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEES-SS-SEEEEEETTSEEEEEETTB---CSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred eeecCceEEEEcCCCCEEEEEec-CC-CeEEEEeCCCEEEEEECCC---CCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 23678899999999999 43 4899999999999999862 123445678899999999 578887 8999
Q ss_pred EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCE
Q 015301 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 327 (409)
Q Consensus 248 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 327 (409)
+++.|++|++||+++. ..+..+.+|.... .+.+++|+|+++.
T Consensus 328 S~S~D~tvklWD~~~~----------------------------------~~~~~~~~~~~~~----~v~~v~fsp~~~~ 369 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDI----------------------------------ATTKTTVSRFRGS----NLVPVVYCPQIYS 369 (524)
T ss_dssp EEETTSEEEEECGGGH----------------------------------HHHCEEEEECSCC----SCCCEEEETTTTE
T ss_pred EeccCCeEEEEECCCC----------------------------------CcccccccccccC----cccceEeCCCcCe
Confidence 9999999999999873 2333344443111 1345679999999
Q ss_pred EEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+++++.|++|++||++++.++..+.+|.+.|++++|+|++++|++|+.||+|++||+...
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 999999999999999999988889999999999999999999999999999999998653
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=279.92 Aligned_cols=291 Identities=9% Similarity=0.045 Sum_probs=216.0
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||+++++.+.+.... .......+.+|...|.+++|+|+| .++.+.+|+.+... .... .
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~----~~~~-~ 83 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG----LLNS-Q 83 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC----SSTT-S
T ss_pred EEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCce----Eeec-C
Confidence 46899999999999988776666 244456778999999999999999 56666666654321 1111 2
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
|...|.+++|||+|+.||+++.||.|++||..+ . .... . +.. .-....+.+++|+|+|++|++|+.|
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~--l~~l-~-~~~-------~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M--LTNL-D-SKG-------NLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E--EEEC-C-CSS-------CSTTTCEEEEEECSSSSCEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e--eeec-c-CCC-------ccccccEEEEEEcCCCCEEEEEcCC
Confidence 356899999999999999999999999999543 1 0000 0 000 0001259999999999999999999
Q ss_pred CeEEEEECCCCee-------eeEE----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce---eeee-e
Q 015301 164 NFIYVYDLQANKC-------SLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA---NGVL-M 228 (409)
Q Consensus 164 ~~i~v~d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~-~ 228 (409)
|+|++||+.+++. +.++ .+|...|.+++|+ |++ +++++.|+.|++||+. .... ...+ .
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~----~~~~~~~~~tL~~ 223 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVS----ASSHQPVSRMIQN 223 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCC----SSSSCCCEEEEEC
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECC----CCccccceeeecc
Confidence 9999999998753 4565 6788899999999 777 8888999999999975 3332 2345 4
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-ccc
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHS 307 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 307 (409)
+|...|.+++|+ ++.|++++ +++|++||+.+. ....+. +|.
T Consensus 224 ~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~-----------------------------------~~~~~~~gh~ 265 (588)
T 2j04_A 224 ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY-----------------------------------SISSLKTGSL 265 (588)
T ss_dssp CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT-----------------------------------EEEEEECSCC
T ss_pred cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC-----------------------------------eEEEEEcCCC
Confidence 788899999999 68888887 699999998872 221222 454
Q ss_pred ceeeeeEEEEeeee--cCCCCEEEEEeCCCeEEEEEccC-----------------------CceEEEeccCCcceeeeE
Q 015301 308 VLRTLIRCYFSPEY--STAQKYIYTGSSDNSVYIYDLVS-----------------------GAQVAKLDFHNAPVRDCC 362 (409)
Q Consensus 308 ~~~~~~~~~~~~~~--s~~~~~l~~~~~dg~v~i~d~~~-----------------------~~~~~~~~~~~~~v~~~~ 362 (409)
..++.+++ +|++..|+++++||. ++|.... ++.+..+. +...|.+++
T Consensus 266 ------~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va 337 (588)
T 2j04_A 266 ------ENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGIS 337 (588)
T ss_dssp ------SCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEE
T ss_pred ------ceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEE
Confidence 23344577 888999999999998 8888631 11122222 244689999
Q ss_pred EecCcCeEEeec
Q 015301 363 WHPIYPMLISSS 374 (409)
Q Consensus 363 ~s~~~~~l~s~~ 374 (409)
|||||+.+|+++
T Consensus 338 ~SPdG~~lA~~~ 349 (588)
T 2j04_A 338 LSPDGYSIAIVY 349 (588)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEE
Confidence 999999999886
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.3e-38 Score=273.74 Aligned_cols=277 Identities=11% Similarity=0.129 Sum_probs=212.6
Q ss_pred ceeeEEecCc-eeEeeccc---eEEEEeeecCCCceee--cCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 4 GREVNYSGRG-RFSAADSC---HVLSRYLPVNGPWKVD--GMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~~~---~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
+.+++|+|+| +++++++. ..+|..........+. +|.+.|.+++|+| ++++|++++.|+.|++||+.+. ...
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~ 154 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQ 154 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceE
Confidence 5789999999 77777654 3455544333333443 7999999999999 7899999999999999999864 555
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ- 155 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 155 (409)
.......+...|.+++|+|++++|++++.|+.|++||+..... .. . ..|...|.+++|+|+++
T Consensus 155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~--~-------------~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEI-FK--E-------------KLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEE-EE--E-------------ECSSSCEEEEEECSSCTT
T ss_pred EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEE-EE--e-------------ccCCCcEEEEEECCCCCC
Confidence 5555555667899999999999999999999999999943211 11 1 13455799999999999
Q ss_pred eEEEEEecCeEEEEECCC----CeeeeEEcCCCCCeEEEEEeCC-CCcEEEEeeCCCeEEEecccccccCCceeeeeecc
Q 015301 156 ELVAAGSDNFIYVYDLQA----NKCSLRIPAHKSDVNTVCFADE-TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH 230 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 230 (409)
+|++++.|+.|++||+.+ +..+..+ .|...|.+++|+ + ++.+|++++.|+.|++||++ .......+..|
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s-~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~ 292 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN-PTDSTKLLTTDQRNEIRVYSSY----DWSKPDQIIIH 292 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC-TTTSCEEEEEESSSEEEEEETT----BTTSCSEEEEC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc-CCCCCEEEEEcCCCcEEEEECC----CCccccccccc
Confidence 899999999999999987 5566656 699999999999 6 99999999999999999986 34443444433
Q ss_pred c-----------------cceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 231 L-----------------EGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 231 ~-----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
. ..+..++++|++++ +++.|+.|++||+++
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~------------------------------- 339 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS------------------------------- 339 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT-------------------------------
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC-------------------------------
Confidence 2 33445677777776 778999999999987
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
+..+..+.++... ..+..++|+|++++|++|+ ||.|++||+++
T Consensus 340 ---~~~~~~l~~~~~~----~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 340 ---GGLVHQLRDPNAA----GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ---CCEEEEECBTTBC----SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ---CceeeeecCCCCC----ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 3445555543211 1222347899999999997 99999999864
No 92
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-38 Score=276.45 Aligned_cols=310 Identities=15% Similarity=0.049 Sum_probs=223.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---eeeeeeec-----------------------------------
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW---KIQKDIET----------------------------------- 81 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~----------------------------------- 81 (409)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977666 47799999998886 32221100
Q ss_pred ----------------ccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcC--CCccccccceeceeeeeeeecCCCCcc
Q 015301 82 ----------------KALRWTITDTSLSPDQRFL-VYASICAIVNIVDVG--SSARESLANVTEIHKGLDFSADGDEDE 142 (409)
Q Consensus 82 ----------------~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (409)
..|...|.+++|+|++++| ++++.||.|++||+. +++........ .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------~~~ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-------------CFS 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-------------ECS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-------------cCC
Confidence 1233369999999999996 889999999999998 55443222110 123
Q ss_pred eeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee----EEcCCCCCeEEEEEeCCC---CcEEEEeeCCCeEEEeccc
Q 015301 143 FGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL----RIPAHKSDVNTVCFADET---GHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~ 215 (409)
..|.+++|+|++++|++++.+|.|++|++.+++... .+.+|...|.+++|+ ++ +.+|++++.|+.|++||++
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEES
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEECC
Confidence 369999999999999999999999999998877554 677899999999999 77 8899999999999999975
Q ss_pred ccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc--cccccccccccccccceec
Q 015301 216 CFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL--RDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 216 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 292 (409)
.+..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++........... ..+.... .
T Consensus 229 ----~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~----~------- 292 (450)
T 2vdu_B 229 ----QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ----H------- 292 (450)
T ss_dssp ----CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTT----S-------
T ss_pred ----CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhc----c-------
Confidence 5555555 56899999999999 99999999999999999998855332221100 0000000 0
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEEEc--cCC---ceEEEeccCCcceeeeEEecC
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDL--VSG---AQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~d~--~~~---~~~~~~~~~~~~v~~~~~s~~ 366 (409)
.. ...+.... .......+..+.++|++++|++++ .++.|++|++ .++ +.+..+..| ..|.+++|+|+
T Consensus 293 ----~~-~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 293 ----LA-PPRFQNEN-NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp ----BC------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred ----cc-cccccccc-cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 00 00000000 000112234567889999999999 8999999999 555 677788877 88999999996
Q ss_pred cCeEEeecC------CCeEEEEecCCC
Q 015301 367 YPMLISSSW------DCNIVRWEIPGI 387 (409)
Q Consensus 367 ~~~l~s~~~------dg~i~iw~~~~~ 387 (409)
+.++++++. +..|.+|.+...
T Consensus 366 ~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 366 EFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred cEEEEEecccCCCCCCcceEEEEEEcC
Confidence 544444443 456888887543
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.7e-38 Score=269.38 Aligned_cols=304 Identities=12% Similarity=0.115 Sum_probs=219.9
Q ss_pred cceeeEEecCce-eEeeccc------eEEEEeeecCCC-ceeecCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q 015301 3 VGREVNYSGRGR-FSAADSC------HVLSRYLPVNGP-WKVDGMNSRVYTSQFSND---GSFFVAASQESNIKVYNVDK 71 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~------~~~~~~~~~~~~-~~l~~h~~~v~~~~~s~~---~~~l~t~~~d~~i~vw~~~~ 71 (409)
.+.+++|+|++. ++++++. ..+|........ ....+|...|++++|+|+ +++|++++.||.|++||+.+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 99 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA 99 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC
Confidence 357899999994 5555532 234443322222 223489999999999999 69999999999999999998
Q ss_pred Ce-eeeeeeecccccceEEEEE------eCCCCcEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcce
Q 015301 72 NW-KIQKDIETKALRWTITDTS------LSPDQRFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 72 ~~-~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
+. ... ....|...|.++. |+|++++|++++.||.|++||+.+++. ..... .....+..
T Consensus 100 ~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~~~~~ 165 (357)
T 3i2n_A 100 PEMPVY---SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-----------PVQGENKR 165 (357)
T ss_dssp CSSCSE---EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-----------CCTTSCCC
T ss_pred CCccEE---EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-----------ccCCCCCC
Confidence 75 333 2446777899995 578999999999999999999987652 11111 11111233
Q ss_pred eeEEEE----EcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC---CCcEEEEeeCCCeEEEecccc
Q 015301 144 GIFSVK----FSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE---TGHLIFSGSDDSLCKVWDRRC 216 (409)
Q Consensus 144 ~v~~~~----~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~ 216 (409)
.+.+++ |+|++++|++++.|+.|++||+++++.... ..|...|.+++|+ | ++++|++++.||.|++||++.
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFD-RKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEES-CSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcC-CCCCCCCEEEEECCCCeEEEEeCcC
Confidence 688888 788999999999999999999999887554 5688999999999 6 899999999999999999873
Q ss_pred cccCCceeee-----eeccccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 217 FISKGRANGV-----LMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 217 ~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
...... +.+|...|.+++|+|+++ +|++++.||.|++||++................
T Consensus 244 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~------------- 306 (357)
T 3i2n_A 244 ----QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG------------- 306 (357)
T ss_dssp ----EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC-------------
T ss_pred ----CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc-------------
Confidence 333333 348999999999999998 899999999999999987543321111000000
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEE-EEeCCCeEEEEEccCCce
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY-TGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~v~i~d~~~~~~ 347 (409)
.......+..+.+|. ..+.+++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 307 --~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 307 --VAGSVSLLQNVTLST------QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp --CCCEEEEEEEEECCS------SCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred --cccccceeeccccCC------CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 000113345555554 3456678999999998 799999999999987654
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-39 Score=282.75 Aligned_cols=283 Identities=13% Similarity=0.157 Sum_probs=218.9
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 47 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
.|+|+++.+++++ .|+... ..+... ..+|...|++++|+| ++++|++|+.||.|++||+.+.+.......
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g-~~~~~~--~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG-KLIATL--MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC-CEEEEE--CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc------cccccc-eEEeee--ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4678888887765 487443 233332 256778999999999 999999999999999999876221110100
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC---CCeeeeEEcC------------CCCCeEEE
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---ANKCSLRIPA------------HKSDVNTV 190 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~------------~~~~v~~~ 190 (409)
. ..+ .|..+|.+++|+|++++|++++.||.|++||+. +++....+.. +...+.++
T Consensus 105 ~-----~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 174 (437)
T 3gre_A 105 S-----LTY-----DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRM 174 (437)
T ss_dssp S-----EEE-----ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEE
T ss_pred e-----eec-----cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEE
Confidence 0 000 245579999999999999999999999999994 4544433321 45666676
Q ss_pred E--EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec--cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 191 C--FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 191 ~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
. ++ +++.+|++++.||.|++||++ ....+..+.. |...|.+++|+|++++|++++.||.|++||+++
T Consensus 175 ~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---- 245 (437)
T 3gre_A 175 RAFVN-EEKSLLVALTNLSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF---- 245 (437)
T ss_dssp EEEEC-SSCEEEEEEETTSEEEEEETT----TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT----
T ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeCC----CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC----
Confidence 6 44 678999999999999999976 6777778877 899999999999999999999999999999987
Q ss_pred ccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG 345 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 345 (409)
+..+..+. .+. ..+....+++.|+|++.+|++|+.||.|++||+.++
T Consensus 246 ------------------------------~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 246 ------------------------------NVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp ------------------------------TEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred ------------------------------ccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 23344443 333 244455667788899999999999999999999999
Q ss_pred ceEEEecc--------------------------CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 346 AQVAKLDF--------------------------HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 346 ~~~~~~~~--------------------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.+..+.+ |...|++++|+ ++++|++++.||.|++||+.+++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 98877764 44568888888 6789999999999999999876543
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.3e-37 Score=268.64 Aligned_cols=294 Identities=13% Similarity=0.230 Sum_probs=222.7
Q ss_pred eeeEEecCceeEee-ccceEEEEeeecCCCc--eeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAA-DSCHVLSRYLPVNGPW--KVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..|.||+++...++ +....+|......... .+.+|...|++++|+|+|++||+|+.||+|+|||+++++.+.. .
T Consensus 109 ~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~---~ 185 (420)
T 4gga_A 109 NLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN---M 185 (420)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---E
T ss_pred eeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE---E
Confidence 57899987744333 3444556544333333 3457889999999999999999999999999999999866554 4
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+|...+.+++++ +..|++|+.|+.+++||.......... ..+|...+..+.|+|+++++++++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~--------------~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT--------------LSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE--------------EECCSSCEEEEEECTTSSEEEEEE
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE--------------ecccccceeeeeecCCCCeeeeee
Confidence 5577789888875 679999999999999998765432111 013555799999999999999999
Q ss_pred ecCeEEEEECCCCe----eeeEEcCCCCCeEEEEEeCCCCcEEEEe--eCCCeEEEecccccccCCceeeeeecccccee
Q 015301 162 SDNFIYVYDLQANK----CSLRIPAHKSDVNTVCFADETGHLIFSG--SDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 162 ~d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
.|+.+++|+..+++ .+.....|...|.+++|+|.+..+++++ +.|+.|++||++ .+.....+..| ..+.
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----t~~~~~~~~~~-~~v~ 324 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDAH-SQVC 324 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT----TTEEEEEEECS-SCEE
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC----ccccceeeccc-ccee
Confidence 99999999998765 3456678999999999997777887764 579999999975 66666666544 5788
Q ss_pred EEEEcCCCCeEEEEe--CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 236 FIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
++.|+|+++.+++++ .|+.|++||+++ ...+..+.+|..
T Consensus 325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~----------------------------------~~~v~~l~gH~~----- 365 (420)
T 4gga_A 325 SILWSPHYKELISGHGFAQNQLVIWKYPT----------------------------------MAKVAELKGHTS----- 365 (420)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTT----------------------------------CCEEEEECCCSS-----
T ss_pred eeeecCCCCeEEEEEecCCCEEEEEECCC----------------------------------CcEEEEEcCCCC-----
Confidence 999999999888765 689999999987 456778888873
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeE
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCC 362 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~ 362 (409)
.+.+++|+|+|++|++|+.|++|+|||+.+..+......+...+....
T Consensus 366 -~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s 413 (420)
T 4gga_A 366 -RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSS 413 (420)
T ss_dssp -CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--------------
T ss_pred -CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence 456778999999999999999999999988776666655554443333
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2e-38 Score=272.63 Aligned_cols=289 Identities=14% Similarity=0.183 Sum_probs=221.4
Q ss_pred cceeeEEecC---c--eeEeeccc--eEEEEeeecCCCceeec-----CCCCeEEEEECCC----CCEEEEEeCCCcEEE
Q 015301 3 VGREVNYSGR---G--RFSAADSC--HVLSRYLPVNGPWKVDG-----MNSRVYTSQFSND----GSFFVAASQESNIKV 66 (409)
Q Consensus 3 ~~~~~~~s~d---g--~~~~~~~~--~~~~~~~~~~~~~~l~~-----h~~~v~~~~~s~~----~~~l~t~~~d~~i~v 66 (409)
.+.+++|+|+ + .++++... ..++..........+.. |...|++++|+|+ +++|++|+.||.|++
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 3578999984 3 35554332 34555444444444443 6688999999999 679999999999999
Q ss_pred EEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 67 YNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 67 w~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
||+.+++.+.. ...|...|.+++|+| ++++|++++.||.|++||+.+++....... ...|...|
T Consensus 100 ~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~v 164 (366)
T 3k26_A 100 INPITMQCIKH---YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG------------VEGHRDEV 164 (366)
T ss_dssp ECTTTCCEEEE---EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS------------TTSCSSCE
T ss_pred EEchhceEeee---ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc------------cccccCce
Confidence 99998865544 335677999999999 899999999999999999988764332211 12455689
Q ss_pred EEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc----------------------------CCCCCeEEEEEeCCCC
Q 015301 146 FSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP----------------------------AHKSDVNTVCFADETG 197 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~ 197 (409)
.+++|+|++++|++++.|+.|++||+.+++....+. .|...|.+++|+ +
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~ 241 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---G 241 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---T
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---C
Confidence 999999999999999999999999998876544333 399999999998 6
Q ss_pred cEEEEeeCCCeEEEeccccccc----------CCceeeeeeccccceeEEEEcCC--CCeEEEEeCCCcEEEeeCCCCcc
Q 015301 198 HLIFSGSDDSLCKVWDRRCFIS----------KGRANGVLMGHLEGITFIDSRRD--GRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 198 ~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
++|++++.||.|++||++.... .......+..|...|.+++|+|+ +++|++++.||.|++||+++...
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 6999999999999999863211 11346677789999999999999 99999999999999999987432
Q ss_pred cccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 266 NTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
.. .....+.+|... ..+.+++|+|++++|++++.||.|++||+.
T Consensus 322 ~~------------------------------~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HK------------------------------AKCTTLTHHKCG----AAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GG------------------------------CEEEEECCTTCC----SCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cc------------------------------ccceEEcccccC----CceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 11 122344444211 334567899999999999999999999985
No 97
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-37 Score=267.04 Aligned_cols=285 Identities=15% Similarity=0.213 Sum_probs=215.8
Q ss_pred eeeEEecCceeEeecc-ceEEEEeeecCCCceeec-CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc
Q 015301 5 REVNYSGRGRFSAADS-CHVLSRYLPVNGPWKVDG-MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK 82 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~l~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~ 82 (409)
.++.|+++..+.++.+ ...+|..........+.. |...|++++|+|++++|++|+.||.|++||+.++..+.. ..
T Consensus 97 ~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~ 173 (401)
T 4aez_A 97 NLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT---MA 173 (401)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---EC
T ss_pred EEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE---ec
Confidence 3567776544433333 234444433333334444 899999999999999999999999999999998865554 34
Q ss_pred cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 83 ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
.|...|.+++| ++++|++++.||.|++||+......... . ..|...|.+++|+|++++|++++.
T Consensus 174 ~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~------------~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT--L------------QGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE--E------------ECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE--E------------cCCCCCeeEEEEcCCCCEEEEEeC
Confidence 67779999999 4679999999999999999854321110 0 135557999999999999999999
Q ss_pred cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee--CCCeEEEecccccccCCceeeeeeccccceeEEEEc
Q 015301 163 DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSR 240 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (409)
|+.|++||+.+++.+..+..|...|.+++|+|....++++++ .|+.|++||++ .+.....+. +...+.+++|+
T Consensus 238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~-~~~~v~~~~~s 312 (401)
T 4aez_A 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----TGARVNTVD-AGSQVTSLIWS 312 (401)
T ss_dssp TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----TCCEEEEEE-CSSCEEEEEEC
T ss_pred CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----CCCEEEEEe-CCCcEEEEEEC
Confidence 999999999999999999999999999999955667888765 79999999975 566666664 66789999999
Q ss_pred CCCCeEEEE--eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 241 RDGRYFISN--GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 241 ~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
|++++++++ +.||.|++||+++... .....+.+|. ..+..
T Consensus 313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~--------------------------------~~~~~~~~h~------~~v~~ 354 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNNLSIWSYSSSGL--------------------------------TKQVDIPAHD------TRVLY 354 (401)
T ss_dssp SSSSEEEEEECTTTCEEEEEEEETTEE--------------------------------EEEEEEECCS------SCCCE
T ss_pred CCCCeEEEEeecCCCcEEEEecCCccc--------------------------------eeEEEecCCC------CCEEE
Confidence 999999994 4899999999876221 1122234444 23445
Q ss_pred eeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 319 PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
++|+|++++|++++.||.|++|++.+++.+...
T Consensus 355 ~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 355 SALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 689999999999999999999999998876654
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-38 Score=269.74 Aligned_cols=254 Identities=18% Similarity=0.240 Sum_probs=208.2
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 158 (409)
..+|...|.+++|+|++++|++++.||.|++||+........... .+|..+|.+++|+++ +++|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-------------TGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-------------CCCSSCEEEEEECCGGGCSEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-------------cCCCCcEEEEEeCCCCCCCEEE
Confidence 456788999999999999999999999999999974432211111 245668999999987 89999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
+++.||.|++||+.+++ .+..+..|...|.+++|+ ++ +.+|++++.||.|++||++. ........+..|...|
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCT--TSCCCEEEEECCTTCE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCC--CCceeeEEecCCCCce
Confidence 99999999999999987 677788899999999999 66 89999999999999999872 2234455677899999
Q ss_pred eEEEEcC-------------CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 235 TFIDSRR-------------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 235 ~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
.+++|+| ++.+|++++.||.|++||++..... .....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------~~~~~ 200 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLES 200 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE------------------------------EEEEE
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc------------------------------eeeEE
Confidence 9999999 6999999999999999999763211 11233
Q ss_pred eeecccceeeeeEEEEeeeecCC---CCEEEEEeCCCeEEEEEccCCc-----eEEEeccCCcceeeeEEecCcCeEEee
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTA---QKYIYTGSSDNSVYIYDLVSGA-----QVAKLDFHNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~v~i~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~ 373 (409)
.+.+|. ..+.+++|+|+ +++|++++.||.|++||+.+++ .+.....|...|++++|+|++++|+++
T Consensus 201 ~~~~h~------~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 201 TLEGHS------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp EECCCS------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EEeccc------CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 445554 33556789999 8999999999999999998864 222233488899999999999999999
Q ss_pred cCCCeEEEEecCC
Q 015301 374 SWDCNIVRWEIPG 386 (409)
Q Consensus 374 ~~dg~i~iw~~~~ 386 (409)
+.||.|++|++..
T Consensus 275 ~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 275 GGDNKVTLWKENL 287 (379)
T ss_dssp ESSSSEEEEEEEE
T ss_pred cCCCcEEEEeCCC
Confidence 9999999999974
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-38 Score=295.22 Aligned_cols=262 Identities=17% Similarity=0.199 Sum_probs=207.3
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNI 111 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~ 111 (409)
..+.+|.+.|++++|+|+|++|++|+.||+|+|||+..+. ........+|...|.+++|+|+ +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 4678999999999999999999999999999999998542 2333445678889999999988 999999999999999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEEEEEecCeEEEEECCCCe--eeeEEcCCCCCe
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELVAAGSDNFIYVYDLQANK--CSLRIPAHKSDV 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v 187 (409)
||+.+++....... ..|..+|.+++|+|+ ++.+++|+.||.|++||+.++. ....+.+|...|
T Consensus 82 wd~~~~~~~~~~~~-------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v 148 (753)
T 3jro_A 82 WKEENGRWSQIAVH-------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (753)
T ss_dssp EEEETTEEEEEEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred EECCCCcccccccc-------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCce
Confidence 99987652222111 235568999999999 9999999999999999998773 345567899999
Q ss_pred EEEEEeCC------------CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCC---CCeEEEEeCC
Q 015301 188 NTVCFADE------------TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---GRYFISNGKD 252 (409)
Q Consensus 188 ~~~~~~~~------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d 252 (409)
.+++|+|. ++.++++|+.||.|++||++...........+.+|...|.+++|+|+ +.+|++++.|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 99999943 58999999999999999987433333566778889999999999999 8999999999
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS 332 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 332 (409)
|.|++||+++...... ..+.....+. ..+.+++|+|++++|++|+
T Consensus 229 g~I~iwd~~~~~~~~~-----------------------------~~~~~~~~~~------~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWK-----------------------------KTLLKEEKFP------DVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp SCEEEEEESSSSSCCB-----------------------------CCBSSSSCCS------SCCCCEEECTTTCCEEEEC
T ss_pred CEEEEecCCCCCCcce-----------------------------eEEeccCCCC------CceEEEEEcCCCCEEEEEc
Confidence 9999999987432110 0111112222 2345668999999999999
Q ss_pred CCCeEEEEEccC
Q 015301 333 SDNSVYIYDLVS 344 (409)
Q Consensus 333 ~dg~v~i~d~~~ 344 (409)
.||.|++|++.+
T Consensus 274 ~Dg~I~vwd~~~ 285 (753)
T 3jro_A 274 GDNKVTLWKENL 285 (753)
T ss_dssp SSSCEECCBCCS
T ss_pred CCCEEEEEecCC
Confidence 999999999874
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=274.09 Aligned_cols=265 Identities=10% Similarity=0.007 Sum_probs=205.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
.....|.+++|||||+++|+++.|++|+ |...+..+ .+|...|.+++|+|+| .++.+.+|+ +
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l------~gh~~~v~~V~FsPdg-------~~~~~~~~~---~ 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI------NCNSKNLFHVKEFPLE-------FENKLDFEL---A 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC------SSBGGGTEEEEEECCC-------CCCTTTTSC---C
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee------cCCCccEEEEEECCCC-------CcceEEEEe---C
Confidence 4558899999999999999999999999 65444222 5788899999999999 345444444 3
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC-----CeEEEEE
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS-----DVNTVCF 192 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~v~~~~~ 192 (409)
+........ |...|.+++|+|+|++|++++.||.|++||.++ .+..+. |.. .|.+++|
T Consensus 75 ~~~~~~~~~--------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 75 QQNGLLNSQ--------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp CSSCSSTTS--------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEE
T ss_pred CCceEeecC--------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEE
Confidence 322222211 123699999999999999999999999999644 555566 665 4999999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCc-------eeeee----eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGR-------ANGVL----MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+ |++++|++|+.||+|++||+. .+. .+..+ .+|...|.+++|+|+| +++++.|+.+++||+.
T Consensus 138 S-PDG~~LAsgs~DGtVkIWd~~----~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 138 N-PIESSIVVGNEDGELQFFSIR----KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS 210 (588)
T ss_dssp C-SSSSCEEEEETTSEEEEEECC----CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC
T ss_pred c-CCCCEEEEEcCCCEEEEEECC----CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC
Confidence 9 899999999999999999976 232 24554 5677899999999999 8889999999999997
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeee-cccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
..... .....+. +|. ..+.+++|+ ++.||+++ ++.|++|
T Consensus 211 ~~~~~-------------------------------~~~~tL~~~h~------~~V~svaFs--g~~LASa~-~~tIkLW 250 (588)
T 2j04_A 211 ASSHQ-------------------------------PVSRMIQNASR------RKITDLKIV--DYKVVLTC-PGYVHKI 250 (588)
T ss_dssp SSSSC-------------------------------CCEEEEECCCS------SCCCCEEEE--TTEEEEEC-SSEEEEE
T ss_pred CCccc-------------------------------cceeeeccccc------CcEEEEEEE--CCEEEEEe-CCeEEEE
Confidence 73210 0122332 343 223455677 58899887 6999999
Q ss_pred EccCCceEEEeccCCcceeeeEE--ecCcCeEEeecCCCeEEEEecC
Q 015301 341 DLVSGAQVAKLDFHNAPVRDCCW--HPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 341 d~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
|+.+++......+|...|.+++| +|++..|++++.||+ ++|...
T Consensus 251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99888774444479999999999 999999999999999 999986
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.9e-37 Score=263.08 Aligned_cols=286 Identities=12% Similarity=0.130 Sum_probs=209.8
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w 112 (409)
..+.+|.+.|++++|+|||++||+|+.++ ++||+++........ .. ..+..+++.++++.+ ++++.|+.|++|
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-EM----RHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-EC----SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-ec----CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 35688999999999999999999998775 789999876443321 11 147778888888877 456778999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-eeeeEEcCCCCCeEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-KCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~ 191 (409)
|..+++...... +..+|.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...++
T Consensus 87 d~~~~~~~~~~~----------------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 87 DDVKKQDVSRIK----------------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp ETTTTEEEEEEE----------------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred ECCCCcEEEEEE----------------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 998876543222 12269999998764 4443 4889999999988 66665554 455666
Q ss_pred EeCCCCcEEEE--eeCCCeEEEeccccccc----CC-------ce-eeeeeccccceeEEEEcCCCCeEEEEeCCCc-EE
Q 015301 192 FADETGHLIFS--GSDDSLCKVWDRRCFIS----KG-------RA-NGVLMGHLEGITFIDSRRDGRYFISNGKDQT-TK 256 (409)
Q Consensus 192 ~~~~~~~~l~~--~~~dg~i~iwd~~~~~~----~~-------~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~ 256 (409)
++ + .+++. |+.||.|++||++.... .. .+ ...+.+|...|.+++|+|++++|++++.|++ |+
T Consensus 145 ~s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 145 FS-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EE-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred EE-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 77 4 55555 68999999999862110 00 11 6778899999999999999999999999998 99
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeee-c-ccceeeeeEEEEeeeecCCCCEEEEEeCC
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK-G-HSVLRTLIRCYFSPEYSTAQKYIYTGSSD 334 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 334 (409)
+||+++ +..+..+. + |. ..+.+++|+|++++|++++.|
T Consensus 222 iwd~~~----------------------------------~~~~~~~~~g~h~------~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 222 VFKTED----------------------------------GVLVREFRRGLDR------ADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp EEETTT----------------------------------CCEEEEEECTTCC------SCEEEEEECTTSCEEEEEETT
T ss_pred EEECCC----------------------------------CcEEEEEEcCCCC------CcEEEEEECCCCCEEEEEECC
Confidence 999987 34555665 3 44 345677899999999999999
Q ss_pred CeEEEEEccCCce--EEEec---------------------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 335 NSVYIYDLVSGAQ--VAKLD---------------------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 335 g~v~i~d~~~~~~--~~~~~---------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+.|++||+..+.. ...+. .+..+...++|++++++|++++.||.+++|++...++.
T Consensus 262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 9999999976531 11111 11223467899999999999999999999999765543
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.9e-37 Score=271.48 Aligned_cols=263 Identities=17% Similarity=0.269 Sum_probs=208.2
Q ss_pred ecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eE
Q 015301 80 ETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-EL 157 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 157 (409)
....|.+.|++++|+|+ +.+|++++.+|.|++|++.+......... .......+ .+|...|.+++|+|++. +|
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~-~~~~~~~~----~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG-ECQPDLRL----RGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC-CCCCSEEE----ECCSSCCCCEEECTTSTTEE
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccc-cCCCcEEe----cCCCCCeEEEEeCCCCCCeE
Confidence 34557779999999997 78999999999999999976321110000 00000001 14566799999999988 99
Q ss_pred EEEEecCeEEEEECCCCee-------eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc
Q 015301 158 VAAGSDNFIYVYDLQANKC-------SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH 230 (409)
Q Consensus 158 ~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 230 (409)
++|+.||.|++||+.++.. ...+..|...|.+++|+|.++.+|++++.||.|++||++... .......+..|
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~ 276 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAH 276 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECC
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecC
Confidence 9999999999999987322 455678999999999995588999999999999999987311 12566667789
Q ss_pred ccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 231 LEGITFIDSRRDGR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 231 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
...|++++|+|++. ++++++.||.|++||+++.. ..+..+..|.
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------~~~~~~~~h~-- 321 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------LKLHSFESHK-- 321 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEECCS--
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------CCeEEeecCC--
Confidence 99999999999987 68899999999999998732 2345555554
Q ss_pred eeeeEEEEeeeecCCCC-EEEEEeCCCeEEEEEccC--------------CceEEEeccCCcceeeeEEecCcC-eEEee
Q 015301 310 RTLIRCYFSPEYSTAQK-YIYTGSSDNSVYIYDLVS--------------GAQVAKLDFHNAPVRDCCWHPIYP-MLISS 373 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~-~l~~~~~dg~v~i~d~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 373 (409)
..+.+++|+|+++ +|++++.||.|+|||+.. .+.+..+.+|...|++++|+|+++ +|+++
T Consensus 322 ----~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 322 ----DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp ----SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred ----CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 3355678999885 799999999999999987 367788889999999999999999 89999
Q ss_pred cCCCeEEEEecCCC
Q 015301 374 SWDCNIVRWEIPGI 387 (409)
Q Consensus 374 ~~dg~i~iw~~~~~ 387 (409)
+.||.|++|++...
T Consensus 398 s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 398 SEDNIMQVWQMAEN 411 (430)
T ss_dssp ETTSEEEEEEECHH
T ss_pred ECCCCEEEeEcccc
Confidence 99999999999754
No 103
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.5e-38 Score=275.45 Aligned_cols=282 Identities=13% Similarity=0.128 Sum_probs=204.2
Q ss_pred ceeeEEec-CceeEeeccc---eEEEEeeecCCCc--eeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeee
Q 015301 4 GREVNYSG-RGRFSAADSC---HVLSRYLPVNGPW--KVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQ 76 (409)
Q Consensus 4 ~~~~~~s~-dg~~~~~~~~---~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~ 76 (409)
+.||+|+| ++.++++++. ..+|++....... .+.+|.+.|++++|+| ++++|++|+.||+|++||++++ ...
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~~ 200 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-ILR 200 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-cee
Confidence 57999999 4567777543 4555544333333 4568999999999998 6899999999999999999876 333
Q ss_pred eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-
Q 015301 77 KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ- 155 (409)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 155 (409)
.......+...+.+++|+|++++|++|+.||.|++||+....... ...|...|.+++|+|+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~----------------~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN----------------LRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCC----------------SBCCSSCEEEEEECTTCSS
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEE----------------EecccceEEeeeecCCCce
Confidence 444444555568899999999999999999999999986543211 124566899999999876
Q ss_pred eEEEEEecCeEEEEECCCCeeeeE---EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 156 ELVAAGSDNFIYVYDLQANKCSLR---IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
+|++++.|+.|++||+.+.+.... ..+|...|++++|+ +++.+|++++.||.|++||++ .+.....+..|..
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~----~~~~~~~~~~~~~ 339 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSAS----QWDCPLGLIPHPH 339 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESS----SSSSEEEECCCCC
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECC----CCccceEEecccc
Confidence 677899999999999988765443 35799999999999 899999999999999999976 4444444444432
Q ss_pred ------ceeEEEEcCCCCeEEEEe------------CCCcEEEeeCCCCcccccccccccccccccccccccccceeccc
Q 015301 233 ------GITFIDSRRDGRYFISNG------------KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKH 294 (409)
Q Consensus 233 ------~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (409)
.+....|+|++..+++++ .++.|++||..++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g------------------------------- 388 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG------------------------------- 388 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-------------------------------
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-------------------------------
Confidence 123445666666666553 2357999998773
Q ss_pred cCccceeeee-cccceeeeeEEEEee-eecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 295 PHDQSLATYK-GHSVLRTLIRCYFSP-EYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 295 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
..+..+. +|.. .+.++ +|+|+|++|++|+ |+.|+||++++++..
T Consensus 389 ---~~~~~l~~~~~~------~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 389 ---KMMCQLYDPESS------GISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ---CEEEEECCSSCC------CCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ---cEEEEEeCCCCC------cEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 3333332 2321 11222 5899999999886 789999999988753
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-37 Score=257.91 Aligned_cols=280 Identities=15% Similarity=0.130 Sum_probs=221.9
Q ss_pred cceeeEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+.+++| |++.++++++. ..+|..........+..|.+.|.+++|+|++++|++++.||.|++|++..........
T Consensus 20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp CEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 3578999 88877777554 3455543334445788999999999999999999999999999999998764333344
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELV 158 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 158 (409)
....|...|.+++| ++++|++++.||.|++|| ..+..... ..|..++.+++|.| ++++++
T Consensus 99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL---------------QAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE---------------ECCSSCEEEEEEEETTTTEEE
T ss_pred chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec---------------ccCCCceeEEEEccCCCCEEE
Confidence 45667789999999 578999999999999999 22211111 12445799999998 899999
Q ss_pred EEEecCeEEEEECCCCeeeeEEcC-CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE
Q 015301 159 AAGSDNFIYVYDLQANKCSLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+++.|+.|++|| ..+....+.. |...+.+++|+ +++. +++++.||.|++||++ .+..+..+..|...|.++
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~ 231 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV-DDGH-FISCSNDGLIKLVDMH----TGDVLRTYEGHESFVYCI 231 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEE-ETTE-EEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEE
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEc-CCCe-EEEccCCCeEEEEECC----chhhhhhhhcCCceEEEE
Confidence 999999999999 4566667766 99999999999 6776 9999999999999975 677888889999999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+|+|++ .|++++.||.|++||+++ +..+..+..+. ..+.
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~----------------------------------~~~~~~~~~~~------~~i~ 270 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKEN----------------------------------GSLKQVITLPA------ISIW 270 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTT----------------------------------CCEEEEEECSS------SCEE
T ss_pred EEecCC-CEEEEecCCEEEEEECCC----------------------------------CceeEEEeccC------ceEE
Confidence 999999 699999999999999987 34455555554 2355
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
+++|+|+++ +++++.||.|++||+++++.+....
T Consensus 271 ~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 271 SVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 678999998 6678999999999999887655443
No 105
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=264.78 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=210.4
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 46 SQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 46 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
..+.+++.+|++|+.||+|++||+.++..+.... ...|.++.|+|+ +++++.|+.|++|+............
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 3455688999999999999999999886655443 236788889988 99999999999998875321111000
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcC--CCCeEEEEEecCeEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEE
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFST--DGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFS 202 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~ 202 (409)
.. .+......|..+|.+++|+| +++++++++.|+.|++||+++++...... .|...+.+++|+ |++.+|++
T Consensus 114 ~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~las 187 (343)
T 3lrv_A 114 NK-----VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLAL 187 (343)
T ss_dssp CC-----EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEEE
T ss_pred cc-----eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEEE
Confidence 00 01111123445799999999 99999999999999999999998876663 456689999999 89999999
Q ss_pred eeCCCeEEEecccccccCCcee-eeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 203 GSDDSLCKVWDRRCFISKGRAN-GVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 203 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
|+.||.|++||++ .+... ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++......
T Consensus 188 g~~dg~i~iwd~~----~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------------ 250 (343)
T 3lrv_A 188 YSPDGILDVYNLS----SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------------ 250 (343)
T ss_dssp ECTTSCEEEEESS----CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS------------
T ss_pred EcCCCEEEEEECC----CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee------------
Confidence 9999999999986 44544 56666 999999999999999999999 55999999988432211
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccCCccee
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVR 359 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~ 359 (409)
+..+..+...... .+++|+|++++|++++. |+.|++|++.+....... .++.
T Consensus 251 -------------------~~~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~ 303 (343)
T 3lrv_A 251 -------------------YPTYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEES 303 (343)
T ss_dssp -------------------SCCCBC-----CC----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEE
T ss_pred -------------------ecccccccccccc----eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCce
Confidence 1111111111110 34689999999999998 999999999766543333 5778
Q ss_pred eeEEec---CcCeEEeecCCCeEEEEecCC
Q 015301 360 DCCWHP---IYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 360 ~~~~s~---~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.++|++ +.+.|++++.||.+.++-...
T Consensus 304 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 304 ALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp ECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred eEecCccccccceeEEEecCCceEEEEecC
Confidence 889998 888999999999999886543
No 106
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=262.95 Aligned_cols=317 Identities=18% Similarity=0.251 Sum_probs=211.5
Q ss_pred cceeeEEec-CceeEeeccc---eEEEEeeecCCCceee-------------cCCCCeEEEEECC-CCCEEEEEeCCCcE
Q 015301 3 VGREVNYSG-RGRFSAADSC---HVLSRYLPVNGPWKVD-------------GMNSRVYTSQFSN-DGSFFVAASQESNI 64 (409)
Q Consensus 3 ~~~~~~~s~-dg~~~~~~~~---~~~~~~~~~~~~~~l~-------------~h~~~v~~~~~s~-~~~~l~t~~~d~~i 64 (409)
.+.+++|+| ++.++++++. ..+|..........+. +|...|.+++|+| ++.+|++++.||.|
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 357899999 9998887553 3455544444333332 6999999999999 77899999999999
Q ss_pred EEEEcCCCeeeeeeeecccccceEEEEEeCCC---CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCc
Q 015301 65 KVYNVDKNWKIQKDIETKALRWTITDTSLSPD---QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED 141 (409)
Q Consensus 65 ~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (409)
++||+.++....... +...+.++.|+|. +.++++++.++.|++||+.+++...... .|
T Consensus 125 ~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---------------~~ 185 (408)
T 4a11_B 125 KVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---------------GH 185 (408)
T ss_dssp EEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---------------CC
T ss_pred EEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---------------CC
Confidence 999999885554432 3447899999885 4599999999999999998775432211 34
Q ss_pred ceeeEEEEEcCCCCe-EEEEEecCeEEEEECCCCe-eeeEE---------------cCCCCCeEEEEEeCCCCcEEEEee
Q 015301 142 EFGIFSVKFSTDGQE-LVAAGSDNFIYVYDLQANK-CSLRI---------------PAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 142 ~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
...|.+++|+|++++ |++++.||.|++||++++. .+..+ ..|...|.+++|+ +++++|++++
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 264 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SDGLHLLTVG 264 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TTSSEEEEEE
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CCCCEEEEec
Confidence 557999999999984 8899999999999998765 33333 5688999999999 8999999999
Q ss_pred CCCeEEEecccccccCCceeeeeecc-----ccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 205 DDSLCKVWDRRCFISKGRANGVLMGH-----LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
.||.|++||++ .+........+ ...+........+..+++++.|+.|++||+.+
T Consensus 265 ~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------------- 323 (408)
T 4a11_B 265 TDNRMRLWNSS----NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS----------------- 323 (408)
T ss_dssp TTSCEEEEETT----TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT-----------------
T ss_pred CCCeEEEEECC----CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC-----------------
Confidence 99999999986 33332222211 12222222333456677888899999999987
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCccee
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 359 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~ 359 (409)
+..+..+.+|. ..+.+++|+|++++|++++.||.|++||+.+++++.....+...
T Consensus 324 -----------------~~~~~~~~~~~------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-- 378 (408)
T 4a11_B 324 -----------------GEQITMLKGHY------KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-- 378 (408)
T ss_dssp -----------------CCEEEEECCCS------SCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------
T ss_pred -----------------CcceeeeccCC------CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--
Confidence 45566666666 23456689999999999999999999999999887665543322
Q ss_pred eeEEecC-cCeEEeecCCCeEEEEecCC
Q 015301 360 DCCWHPI-YPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 360 ~~~~s~~-~~~l~s~~~dg~i~iw~~~~ 386 (409)
..+.+. ...+.+++.|+.+++|+.+.
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 -SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------------
T ss_pred -cccccccceeecccCccCceeecCCcc
Confidence 233332 33556677899999998764
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.8e-37 Score=269.90 Aligned_cols=249 Identities=15% Similarity=0.175 Sum_probs=192.6
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecC-----------CCceeecCC------------CCeEEEEECCCC--CE
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVN-----------GPWKVDGMN------------SRVYTSQFSNDG--SF 54 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~-----------~~~~l~~h~------------~~v~~~~~s~~~--~~ 54 (409)
.+.+++|||||.++++++.. .+|...... ....+.+|. +.|++++|+|++ .+
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~ 109 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ 109 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence 35789999999999886543 444443322 134788998 889999999998 79
Q ss_pred EEEEeCCCcEEEEEcCCCeeeee-------------------------------------eeecccccceEEEEEeCCCC
Q 015301 55 FVAASQESNIKVYNVDKNWKIQK-------------------------------------DIETKALRWTITDTSLSPDQ 97 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~-------------------------------------~~~~~~~~~~v~~~~~s~~~ 97 (409)
|++++.|++|++|++.++..... .....+|...|.+++|+|++
T Consensus 110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence 99999999999999876432100 01135688899999999999
Q ss_pred cEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCe
Q 015301 98 RFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~ 175 (409)
++|+++ .|+.|++||+.+... ....... ......|...|.+++|+|++ ++|++++.||.|++||+++++
T Consensus 190 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 190 ETYLSA-DDLRINLWHLEITDRSFNIVDIK--------PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp SEEEEE-CSSEEEEEETTEEEEEEEEEECC--------CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred CEEEEe-CCCeEEEEECCCCCceeeeeecc--------cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 999998 799999999984322 1111000 00122456689999999998 999999999999999999988
Q ss_pred e----eeEEcCCCC------------CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccc------
Q 015301 176 C----SLRIPAHKS------------DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEG------ 233 (409)
Q Consensus 176 ~----~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------ 233 (409)
. +..+..|.. .|.+++|+ +++.+|++++. +.|++||++. .+..+..+..|...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~---~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNM---ENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTC---CSSCSCCEESCGGGTTTHHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCC---Cccccceeeccccccccccc
Confidence 6 677888876 89999999 79999999998 9999999861 26667777777542
Q ss_pred ---------eeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 234 ---------ITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 234 ---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
+..++|+|++++|++++.||.|++||+.+...
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23489999999999999999999999988654
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=9.9e-38 Score=269.70 Aligned_cols=265 Identities=11% Similarity=0.072 Sum_probs=181.1
Q ss_pred EEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC--------CCCeEEEEE
Q 015301 90 DTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST--------DGQELVAAG 161 (409)
Q Consensus 90 ~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~ 161 (409)
...+.+++.+|++++.|++|++||..+++..... ......+|...|++++|+| ++++|++++
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~----------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQH----------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEE----------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceee----------eecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 3344556778999999999999999877543221 1123357888999999998 789999999
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce------------------
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA------------------ 223 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------ 223 (409)
.|++|+|||+.++..+..+..|..+|.+++|+|.+.++|++++.||+|++||++........
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 99999999999988888888899999999999555578999999999999998632111100
Q ss_pred ---eeeeeccccceeEEEEc-CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 224 ---NGVLMGHLEGITFIDSR-RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 224 ---~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
.....+|...+.++.|+ |+++.|++++.|+.+++||+............. ......... ..
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~----~~~~~~~~~-----------~~ 308 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST----MKLGPKNLL-----------PN 308 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCS-----------CS
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec----CccccEEEc-----------cc
Confidence 11124577788999986 799999999999999999998754332221100 000000000 00
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeE
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
......+. ......+.+ .+++.++++|+.||.|++||+.+++.+..+..|..+|.+++|+|||++||+++.|| +
T Consensus 309 ~~~~~~~~---~~~~~~~~~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 309 VQGISLFP---SLLGACPHP--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp EEEECSSC---CSSCCEECS--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred cccccccC---cceeEEEcc--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence 01111111 111111111 22556778889999999999999999888888999999999999999999998765 5
Q ss_pred EEEecC
Q 015301 380 VRWEIP 385 (409)
Q Consensus 380 ~iw~~~ 385 (409)
.+|++.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 566553
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=244.09 Aligned_cols=278 Identities=13% Similarity=0.220 Sum_probs=214.5
Q ss_pred eeeEEecCceeEee-ccceEEEEeeecCCCce--eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 5 REVNYSGRGRFSAA-DSCHVLSRYLPVNGPWK--VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 5 ~~~~~s~dg~~~~~-~~~~~~~~~~~~~~~~~--l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
++|+||+++...++ +....+|+....+.... +.+|...|++++|+|++++||+|+.||+|++|++++++.+...
T Consensus 29 ~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~--- 105 (318)
T 4ggc_A 29 NLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--- 105 (318)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred eEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe---
Confidence 67999999844333 33344555433333333 4578889999999999999999999999999999998665543
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 161 (409)
.+|...+.++.+ ++..+++++.++.+++|+........... .+|...+..+.+++++++|++++
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL--------------SGHSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE--------------ECCSSCEEEEEECTTSSEEEEEE
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE--------------cCccCceEEEEEcCCCCEEEEEe
Confidence 445556766554 56799999999999999987664321111 13455799999999999999999
Q ss_pred ecCeEEEEECCCCee----eeEEcCCCCCeEEEEEeCCCCcEE--EEeeCCCeEEEecccccccCCceeeeeecccccee
Q 015301 162 SDNFIYVYDLQANKC----SLRIPAHKSDVNTVCFADETGHLI--FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
.|+.|++||+.+++. ......|...|.+++++|.+...+ ++++.++.|++||.+ .... .....+...+.
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~-~~~~~~~~~v~ 244 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGAC-LSAVDAHSQVC 244 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT----TCCE-EEEEECSSCEE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc----cccc-cccccceeeee
Confidence 999999999987653 344567889999999996566655 456788999999964 3333 33445777899
Q ss_pred EEEEcCCCCeEEEEe--CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 236 FIDSRRDGRYFISNG--KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
.+.|+|++..+++++ .|+.|++||+++ ++.+..+.+|.
T Consensus 245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~----------------------------------~~~~~~l~gH~------ 284 (318)
T 4ggc_A 245 SILWSPHYKELISGHGFAQNQLVIWKYPT----------------------------------MAKVAELKGHT------ 284 (318)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTT----------------------------------CCEEEEECCCS------
T ss_pred eeeecccccceEEEEEcCCCEEEEEECCC----------------------------------CcEEEEEcCCC------
Confidence 999999999887754 799999999987 46677788887
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+.+++|+|++++|++|+.||+|+|||+.+..
T Consensus 285 ~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 285 SRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 345677899999999999999999999997654
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.4e-36 Score=259.97 Aligned_cols=289 Identities=13% Similarity=0.130 Sum_probs=216.6
Q ss_pred ceeeEEecCceeEe-e---ccceEEEEeeec----CCCceeecCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCee
Q 015301 4 GREVNYSGRGRFSA-A---DSCHVLSRYLPV----NGPWKVDGMNSRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 4 ~~~~~~s~dg~~~~-~---~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
.+.++++|+...+. + ++...++.+... .....+.+|.+.|++++|+| ++++|++|+.||+|++|++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34678888876443 2 233444543222 23346889999999999999 999999999999999999988732
Q ss_pred e----eeeeecccccceEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 75 I----QKDIETKALRWTITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 75 ~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
. .......+|...|.+++|+|++ ++|++++.|+.|++||+.+++...... ...|...|.+++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~~~v~~~~ 183 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-------------PDVHPDTIYSVD 183 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-------------TTTCCSCEEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-------------cCCCCCceEEEE
Confidence 1 1223345677799999999998 699999999999999998875432221 013455799999
Q ss_pred EcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCC-eEEEEEeCCCCcEEEEe---eCCCeEEEecccccccCCcee
Q 015301 150 FSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSD-VNTVCFADETGHLIFSG---SDDSLCKVWDRRCFISKGRAN 224 (409)
Q Consensus 150 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~ 224 (409)
|+|++++|++++.|+.|++||+++++.+..+ ..|... +.+++|+ +++.+|++| +.|+.|++||++.. .....
T Consensus 184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~--~~~~~ 260 (402)
T 2aq5_A 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHL--EEPLS 260 (402)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBC--SSCSE
T ss_pred ECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccc--cCCce
Confidence 9999999999999999999999999999888 788776 8999999 789999999 79999999998621 11111
Q ss_pred eeeeccccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 225 GVLMGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 225 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
.....|...+.+++|+|++++|++ ++.||.|++||+.+... .+..+
T Consensus 261 ~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---------------------------------~~~~l 307 (402)
T 2aq5_A 261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP---------------------------------FLHYL 307 (402)
T ss_dssp EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT---------------------------------CEEEE
T ss_pred EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc---------------------------------ceEee
Confidence 222356778999999999999865 55799999999987321 12333
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
..+... ..+.+++|+|++.++++ .++.+++|++.+++.
T Consensus 308 ~~~~~~----~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 308 SMFSSK----ESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEECCS----SCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred cccccC----CcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 332211 22345678899998875 566999999988654
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=282.24 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=209.7
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC--CCeEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD--GQELV 158 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 158 (409)
..+|.+.|++++|+|++++|++|+.||.|++||+.++....... ..+|..+|.+++|+|+ +++|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~-------------l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-------------LTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE-------------ECCCSSCEEEEEECCTTSCSEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee-------------ccCCcCceEEEEecCCCCCCEEE
Confidence 45688899999999999999999999999999997543221111 1246668999999987 99999
Q ss_pred EEEecCeEEEEECCCCe--eeeEEcCCCCCeEEEEEeCCC--CcEEEEeeCCCeEEEecccccccCCceeeeeeccccce
Q 015301 159 AAGSDNFIYVYDLQANK--CSLRIPAHKSDVNTVCFADET--GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
+|+.||.|++||+.+++ .+..+..|...|.+++|+ |+ ++++++|+.||.|++||++. ........+.+|...|
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~--~~~~~~~~~~~~~~~v 148 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIIIDAHAIGV 148 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCS--SSCCCCEEEECCSSCE
T ss_pred EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeec--CCCcceeEeecCCCce
Confidence 99999999999999887 667788899999999999 66 89999999999999999872 2234455677899999
Q ss_pred eEEEEcC-------------CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 235 TFIDSRR-------------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 235 ~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
.+++|+| ++.++++++.||.|++||+++.... .....
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~------------------------------~~~~~ 198 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVLES 198 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE------------------------------EEEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc------------------------------ceeee
Confidence 9999999 5899999999999999999873211 12234
Q ss_pred eeecccceeeeeEEEEeeeecCC---CCEEEEEeCCCeEEEEEccCCc-----eEEEeccCCcceeeeEEecCcCeEEee
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTA---QKYIYTGSSDNSVYIYDLVSGA-----QVAKLDFHNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~v~i~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~ 373 (409)
.+.+|. ..+.+++|+|+ +++|++|+.||.|++||+.+++ .+.....|...|++++|+|++++|+++
T Consensus 199 ~~~~h~------~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 199 TLEGHS------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp EECCCS------SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred eecCCC------CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 455555 33566789999 9999999999999999998874 334445688999999999999999999
Q ss_pred cCCCeEEEEecCCCc
Q 015301 374 SWDCNIVRWEIPGIG 388 (409)
Q Consensus 374 ~~dg~i~iw~~~~~~ 388 (409)
+.||.|++|++....
T Consensus 273 s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 273 GGDNKVTLWKENLEG 287 (753)
T ss_dssp CSSSCEECCBCCSSS
T ss_pred cCCCEEEEEecCCCC
Confidence 999999999998543
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-35 Score=259.77 Aligned_cols=294 Identities=19% Similarity=0.263 Sum_probs=215.7
Q ss_pred eEEecCceeEeeccc---eEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc
Q 015301 7 VNYSGRGRFSAADSC---HVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA 83 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~---~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~ 83 (409)
.++++|+.++++++. ..++..........+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.+.. ...
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~ 211 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT---LIH 211 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE---ECC
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE---EcC
Confidence 355668888777553 355555444555688899999999999 789999999999999999998865544 345
Q ss_pred ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec
Q 015301 84 LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD 163 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 163 (409)
|...|.+++|++ ..|++++.||.|++||+.++......... .+|...|.+++| +++++++|+.|
T Consensus 212 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 212 HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVL------------VGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEE------------CCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEe------------cCCCCcEEEEEe--CCCEEEEEeCC
Confidence 677999999974 58999999999999999876543221111 245567999999 78899999999
Q ss_pred CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCC
Q 015301 164 NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG 243 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (409)
|.|++||+.+++.+..+.+|...|.++++. ++++++|+.||.|++||++ .+..+..+.+|...|.+++| ++
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEC--CS
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECC----CCCEEEEEeCCcCcEEEEEe--cC
Confidence 999999999999999999999999999986 5799999999999999975 67888889999999999999 68
Q ss_pred CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 244 RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
.+|++++.||.|++||+++........ ....+..+.+|... +.++++
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~~~h~~~------v~~l~~-- 393 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPA-------------------------GTLCLRTLVEHSGR------VFRLQF-- 393 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCT-------------------------TTTEEEEECCCSSC------CCCEEE--
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccc-------------------------cchheeeccCCCCC------eEEEEe--
Confidence 899999999999999987633111000 01134555666532 233445
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
++++|++|+.||.|++||+.+........ ...+...+.|.
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp CSSCEEECCSSSEEEEEC-----------------------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 68899999999999999998876554433 23345555554
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-35 Score=252.76 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=203.1
Q ss_pred cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEE
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVA 159 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 159 (409)
..+|...|.+++|+|++++|++++.|+.|++|++.++.......... .|...|.+++|+|+++ +|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~l~~ 74 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL------------RYKHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE------------ECSSCEEEEEEEESSSEEEEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee------------ecCCceEEEEECCCCCcEEEE
Confidence 34677899999999999999999999999999998765211111111 3455799999999999 9999
Q ss_pred EEecCeEEEEEC-CCCeeeeEEcC--CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC-----Cceeeeeeccc
Q 015301 160 AGSDNFIYVYDL-QANKCSLRIPA--HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----GRANGVLMGHL 231 (409)
Q Consensus 160 ~~~d~~i~v~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~ 231 (409)
++.||.|++||+ .+++. ..+.. |...|.+++|+ + +++|++++.|+.|++||++..... ......+. |.
T Consensus 75 ~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK 150 (342)
T ss_dssp EETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred EcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence 999999999999 87754 66778 99999999999 5 899999999999999998621000 34444444 88
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEeeCCC-CcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 232 EGITFIDSRRDGRYFISNGKDQTTKLWDIRK-MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
..+.+++|+|++ +++++.|+.|++||+++ ..... ......+.
T Consensus 151 ~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~--------------------------------~~~~~~~~--- 193 (342)
T 1yfq_A 151 NKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG--------------------------------TIEESGLK--- 193 (342)
T ss_dssp CCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC--------------------------------EEEECSCS---
T ss_pred CceEEEEecCCc--EEEEeCCCeEEEEECCccccccc--------------------------------eeeecCCC---
Confidence 999999999887 99999999999999986 32110 11111122
Q ss_pred eeeEEEEeeeecC-CCCEEEEEeCCCeEEEEEccCC------ceEEEeccCCc---------ceeeeEEecCcCeEEeec
Q 015301 311 TLIRCYFSPEYST-AQKYIYTGSSDNSVYIYDLVSG------AQVAKLDFHNA---------PVRDCCWHPIYPMLISSS 374 (409)
Q Consensus 311 ~~~~~~~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~------~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~ 374 (409)
..+.+++|+| +++++++++.||.|++|++... +....+..|.. .|.+++|+|++++|++++
T Consensus 194 ---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 194 ---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270 (342)
T ss_dssp ---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred ---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec
Confidence 1234667899 9999999999999999999887 77888888865 999999999999999999
Q ss_pred CCCeEEEEecCCCcc
Q 015301 375 WDCNIVRWEIPGIGE 389 (409)
Q Consensus 375 ~dg~i~iw~~~~~~~ 389 (409)
.||.|++||+.++..
T Consensus 271 ~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 271 SDGIISCWNLQTRKK 285 (342)
T ss_dssp TTSCEEEEETTTTEE
T ss_pred CCceEEEEcCccHhH
Confidence 999999999987653
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.6e-34 Score=234.29 Aligned_cols=280 Identities=13% Similarity=0.133 Sum_probs=188.6
Q ss_pred eEEEEECCCCC---EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcC
Q 015301 43 VYTSQFSNDGS---FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVG 115 (409)
Q Consensus 43 v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~ 115 (409)
+.++-|-..|- .+++++. ..|++|+..++.+.........|..+|..+.+.||..-|+..... +.|+..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 66777755443 6777775 589999999985555666667777789999999875444332211 011111111
Q ss_pred CC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE--ecCeEEEEEC-CCCeeeeEEcCCCCCeEEEE
Q 015301 116 SS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDL-QANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 116 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~-~~~~~~~~~~~~~~~v~~~~ 191 (409)
.. +......... +|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+.+|...++.++
T Consensus 121 pd~~~~~~~l~s~------------g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 121 SDDESEKQVLLKS------------GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp -----CCEEEEEE------------EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred CCccccccEEEeC------------CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 10 0000000000 111234443 4555555533 4899999999 55888888888999999999
Q ss_pred EeC--CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc---cceeEEEEcCCCCeE------------EEEeCCCc
Q 015301 192 FAD--ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL---EGITFIDSRRDGRYF------------ISNGKDQT 254 (409)
Q Consensus 192 ~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~ 254 (409)
|+| .++.+|++++.|++|+|||++ +++.+..+.+|. ..+.+++|+|+|.++ ++|+.|++
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~----TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLK----TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETT----TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECC----CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 983 277999999999999999975 788888887654 357777999999876 56778999
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee-----ecccceeeeeEEEEeeeecCCCCEEE
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY-----KGHSVLRTLIRCYFSPEYSTAQKYIY 329 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l~ 329 (409)
|++||..+... +..+ .+|... ..+..+ ++.+++
T Consensus 262 IklWd~~tgk~----------------------------------l~v~~~~~p~Gh~~~------~lsg~~--sg~~lA 299 (356)
T 2w18_A 262 LIVINPKTTLS----------------------------------VGVMLYCLPPGQAGR------FLEGDV--KDHCAA 299 (356)
T ss_dssp EEEEETTTTEE----------------------------------EEEEEECCCTTCCCC------EEEEEE--ETTEEE
T ss_pred EEEEECCCCEE----------------------------------EEEEEeeccCCCcce------eEcccc--CCCEEE
Confidence 99999887332 2111 122211 112222 277899
Q ss_pred EEeCCCeEEEEEccCCceEEEeccCCccee-eeEEecCcCeEEeecCCCeEEEEec
Q 015301 330 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVR-DCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 330 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
+|+.|++|+|||+.+++++.++++|...+. .++|+||+++|++|+.|++|++||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999999999987665 5899999999999999999999996
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.6e-35 Score=249.46 Aligned_cols=302 Identities=14% Similarity=0.149 Sum_probs=205.8
Q ss_pred cceeeEEecCceeEeeccce---EEEEeeecCC----CceeecCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe
Q 015301 3 VGREVNYSGRGRFSAADSCH---VLSRYLPVNG----PWKVDGMNSRVYTSQFSN--DGSFFVAASQESNIKVYNVDKNW 73 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~---~~~~~~~~~~----~~~l~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~ 73 (409)
.+.+++|+|+|+++++++.. .+|....... ...+.+|...|++++|+| ++++|++++.||.|++||+.++.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 36789999999988886543 4454433322 235679999999999999 69999999999999999998763
Q ss_pred e------eeeeeecccccceEEEEEeCCC--CcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceee
Q 015301 74 K------IQKDIETKALRWTITDTSLSPD--QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 74 ~------~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
. .........|...|.+++|+|+ +++|++++.||.|++||+.+++............. .......+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 170 (351)
T 3f3f_A 93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV--LSIPPANHLQSD 170 (351)
T ss_dssp CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES--CSCCCSSCSCCC
T ss_pred ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc--cccccCCcccce
Confidence 1 1223345567779999999999 99999999999999999998876544443322222 112223566789
Q ss_pred EEEEEcCC---CCeEEEEEecCeEEEEECCCCee--eeEEcCCCCCeEEEEEeCCCC----cEEEEeeCCCeEEEecccc
Q 015301 146 FSVKFSTD---GQELVAAGSDNFIYVYDLQANKC--SLRIPAHKSDVNTVCFADETG----HLIFSGSDDSLCKVWDRRC 216 (409)
Q Consensus 146 ~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~ 216 (409)
.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|.+++|+ +++ ++|++++.||.|++||++
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~- 248 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKIT- 248 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEE-
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCC-
Confidence 99999997 89999999999998888877765 66678899999999999 666 899999999999999986
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeC----CCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
..........+..........+....+..+.. ...+.+|+...
T Consensus 249 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 295 (351)
T 3f3f_A 249 ---EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ------------------------------ 295 (351)
T ss_dssp ---ECC---------------------------------------CCSEE------------------------------
T ss_pred ---CCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc------------------------------
Confidence 22222223333333333444444433333332 23344444332
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEe
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 351 (409)
...+..+.+|. ..+.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 296 ----~~~~~~~~~h~------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 296 ----VELLSEHDDHN------GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----EEEEEEECTTS------SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ----ccEEEEEeccc------ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 24455666665 33566789999999999999999999999988655444
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.5e-35 Score=256.42 Aligned_cols=274 Identities=16% Similarity=0.231 Sum_probs=208.6
Q ss_pred eeecCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCC-------eeeeeeeecccccceEEEEEeCCCCc-EEEEEec
Q 015301 35 KVDGMNSRVYTSQFSND-GSFFVAASQESNIKVYNVDKN-------WKIQKDIETKALRWTITDTSLSPDQR-FLVYASI 105 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 105 (409)
...+|.+.|++++|+|+ +.+||+++.||.|++|++... ...........|...|.+++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 45689999999999997 689999999999999999762 11223334456777999999999988 9999999
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCC---eeeeEEc
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQAN---KCSLRIP 181 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 181 (409)
||.|++|++..+........ .......|...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~--------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVID--------AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEE--------CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred CCeEEEEeCCCCCCCCceec--------cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 99999999987432111000 0001124566899999999 7788999999999999999987 5677788
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCC-eEEEEeCCCcEEEeeC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDI 260 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~ 260 (409)
.|...|++++|+|....+|++|+.||.|++||++. ....+..+..|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 89999999999944445899999999999999872 2456777888999999999999985 6899999999999999
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC-EEEEEeCCCeEEE
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK-YIYTGSSDNSVYI 339 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~v~i 339 (409)
+.......... ........+..+.+|. ..+..++|+|+++ +|++++.||.|+|
T Consensus 352 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~------~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 352 SKIGEEQSTED--------------------AEDGPPELLFIHGGHT------AKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp GGTTCCCCHHH--------------------HHHCCTTEEEECCCCS------SCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred CCCccccCccc--------------------cccCCcceEEEcCCCC------CCceEEEECCCCCCEEEEEECCCCEEE
Confidence 87332111000 0000012344444554 2345668999999 9999999999999
Q ss_pred EEccCC
Q 015301 340 YDLVSG 345 (409)
Q Consensus 340 ~d~~~~ 345 (409)
|++...
T Consensus 406 w~~~~~ 411 (430)
T 2xyi_A 406 WQMAEN 411 (430)
T ss_dssp EEECHH
T ss_pred eEcccc
Confidence 998654
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.9e-34 Score=249.56 Aligned_cols=283 Identities=11% Similarity=0.092 Sum_probs=222.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee--ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI--ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS 117 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~ 117 (409)
...+.+++|+|++.++++++.++.|++||+.+++...... ....|...|.+++|+|+++++++++.|+.|++||+.++
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3456799999988888888889999999999886553221 23467778999999999999999999999999999876
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
+...... .|...+.+++|+|+++.+++++ .++.|++||+.+++.+..+..+ ..+.+++|+ ++
T Consensus 202 ~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~-~~ 264 (433)
T 3bws_A 202 AYKATVD---------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS-KD 264 (433)
T ss_dssp CEEEEEE---------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC-TT
T ss_pred eEEEEEc---------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc-CC
Confidence 5432221 2233689999999999886555 6899999999999988877654 558999999 78
Q ss_pred CcEEEEee--------CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE-EEEeCCCcEEEeeCCCCcccc
Q 015301 197 GHLIFSGS--------DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 197 ~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 267 (409)
++.+++++ .||.|++||++ .++....+ .|...+.+++|+|+++.+ ++++.|+.|++||+++.
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---- 335 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMD----KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---- 335 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETT----TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----
T ss_pred CCEEEEEECCCCccccCCCeEEEEECC----CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----
Confidence 88888887 48899999975 44444433 566788999999999755 56688999999999862
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC--------------
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-------------- 333 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------------- 333 (409)
+.+..+... ..+..++++|++++|++++.
T Consensus 336 ------------------------------~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 336 ------------------------------KVQKSIPVF-------DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp ------------------------------EEEEEEECS-------SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred ------------------------------cEEEEecCC-------CCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 222222211 11345689999999888876
Q ss_pred -CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeec-CCCeEEEEecCC
Q 015301 334 -DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEIPG 386 (409)
Q Consensus 334 -dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 386 (409)
||.|++||+.+++.+..+.. ...+.+++|+|++++|++++ .|+.|++|+++.
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999988875 45789999999999988776 499999999864
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=248.37 Aligned_cols=204 Identities=15% Similarity=0.167 Sum_probs=169.4
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcC--CCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 38 GMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVD--KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
+|.+.|++++|+|++++| ++++.||.|++|++. ++..+... ....+...|.+++|+|++++|++++.+|.+++|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 466689999999999996 899999999999998 66444433 22345568999999999999999999999999999
Q ss_pred CCCcccc-ccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEecCeEEEEECCCCeeeeE-EcCCCCCeEE
Q 015301 115 GSSARES-LANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNT 189 (409)
Q Consensus 115 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~ 189 (409)
.+..... ..... .+|...|.+++|+|+ +++|++++.|+.|++||+.+++.+.. +.+|...|.+
T Consensus 179 ~~~~~~~~~~~~~------------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 179 NSIPEEKFTQEPI------------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS 246 (450)
T ss_dssp TSCCCSSCCCCCS------------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred CCcccccccceee------------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence 8766432 11111 134557999999999 99999999999999999999988877 5689999999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------------------------cccceeEEEEcCCCC
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------------------------HLEGITFIDSRRDGR 244 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~ 244 (409)
++|+ ++.+|++++.|+.|++||++ .++.+..+.. ....|..++|+|+++
T Consensus 247 ~~~s--d~~~l~s~~~d~~v~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 247 ICCG--KDYLLLSAGGDDKIFAWDWK----TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp EEEC--STTEEEEEESSSEEEEEETT----TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred EEEC--CCCEEEEEeCCCeEEEEECC----CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 9998 89999999999999999976 5555555542 235689999999999
Q ss_pred eEEEEe-CCCcEEEeeC
Q 015301 245 YFISNG-KDQTTKLWDI 260 (409)
Q Consensus 245 ~l~~~~-~dg~i~iwd~ 260 (409)
+|++++ .|+.|++|++
T Consensus 321 ~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEETTCSEEEEEEE
T ss_pred EEEEEECCCCeEEEEEe
Confidence 999998 8999999999
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=9.6e-33 Score=239.31 Aligned_cols=268 Identities=14% Similarity=0.088 Sum_probs=210.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
.++++++.|+.|++||+.+++...... . + ..+.+++|+|++++| ++++.|+.|++||+.+++.......
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~-~--~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP-V--G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------ 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-C--S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee-c--C-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC------
Confidence 467888999999999999886554432 2 2 258999999999987 5666899999999988765332221
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i 209 (409)
...+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+ ++++.+ ++++.++.|
T Consensus 73 ----------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 73 ----------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTV 140 (391)
T ss_dssp ----------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEE
T ss_pred ----------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC-CCCCEEEEEeCCCCEE
Confidence 11589999999999886655 5699999999999988877754 578999999 777766 788889999
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeE-EEEeCCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF-ISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
++||++ .++....+..+ ..+..++|+|+++++ ++++.++.|++||+++.
T Consensus 141 ~~~d~~----~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------------- 190 (391)
T 1l0q_A 141 SVINTV----TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------------- 190 (391)
T ss_dssp EEEETT----TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-------------------------
T ss_pred EEEECC----CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-------------------------
Confidence 999975 56666666554 456899999999987 56778899999999873
Q ss_pred ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe---CCCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS---SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
..+..+..+ .....++|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|
T Consensus 191 ---------~~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~ 253 (391)
T 1l0q_A 191 ---------SVIDTVKVE-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP 253 (391)
T ss_dssp ---------EEEEEEECS-------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT
T ss_pred ---------eEEEEEecC-------CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc
Confidence 222222221 1234567999999999888 68999999999999998888765 578999999
Q ss_pred CcCeE-EeecCCCeEEEEecCCCcc
Q 015301 366 IYPML-ISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 366 ~~~~l-~s~~~dg~i~iw~~~~~~~ 389 (409)
++++| ++++.|+.|++||+.+++.
T Consensus 254 dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 254 DGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCCcE
Confidence 99977 6778999999999987543
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=241.22 Aligned_cols=275 Identities=15% Similarity=0.087 Sum_probs=207.6
Q ss_pred cceeeEEecC---ceeEeeccce---EEEEeeecCCC--ceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 015301 3 VGREVNYSGR---GRFSAADSCH---VLSRYLPVNGP--WKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK 74 (409)
Q Consensus 3 ~~~~~~~s~d---g~~~~~~~~~---~~~~~~~~~~~--~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~ 74 (409)
.+.+++|+|+ |.++++++.. .+|........ ..+.+|.+.|++++|+|++++|++++.||.|++||+.++..
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 120 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 120 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence 3579999999 5888876543 34444331222 47789999999999999999999999999999999998854
Q ss_pred eeeeeecccccceEEEEEe--CCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC
Q 015301 75 IQKDIETKALRWTITDTSL--SPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST 152 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 152 (409)
.. ...|...|.+++| +|++++|++++.||.|++||+.+++........ ..+.++.+.+
T Consensus 121 ~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------~~~~~~~~~~ 180 (368)
T 3mmy_A 121 IQ----IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP----------------ERCYCADVIY 180 (368)
T ss_dssp EE----EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS----------------SCEEEEEEET
T ss_pred ee----eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC----------------CCceEEEecC
Confidence 43 3346678999999 999999999999999999999887653332211 1366666654
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeeeEE--cCCCCCeEEEEEeCCCCc----EEEEeeCCCeEEEecccccccCC-ceee
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSLRI--PAHKSDVNTVCFADETGH----LIFSGSDDSLCKVWDRRCFISKG-RANG 225 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~-~~~~ 225 (409)
..+++++.++.+.+|++......... ..+...+.++++. ++.. .+++++.||.|++||++.. .. ....
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~i~i~~~~~~--~~~~~~~ 255 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF-KDKQNKPTGFALGSIEGRVAIHYINPP--NPAKDNF 255 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE-ECTTSCEEEEEEEETTSEEEEEESSCS--CHHHHSE
T ss_pred --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc-ccCCCCCCeEEEecCCCcEEEEecCCC--Cccccce
Confidence 47888999999999999876544332 2344556666665 3333 3999999999999998621 11 4455
Q ss_pred eeecccc------------ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 226 VLMGHLE------------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 226 ~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
.+..|.. .|.+++|+|++++|++++.||.|++||+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~------------------------------- 304 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA------------------------------- 304 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT-------------------------------
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC-------------------------------
Confidence 6666665 799999999999999999999999999987
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
+..+..+.+|. ..+.+++|+|++++|++++.|+..+.|++
T Consensus 305 ---~~~~~~~~~~~------~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 305 ---RTKLKTSEQLD------QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---TEEEEECCCCS------SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ---CcEEEEecCCC------CCceEEEECCCCCeEEEEecccccccccc
Confidence 34455566555 33556789999999999999876555544
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.5e-33 Score=236.22 Aligned_cols=295 Identities=11% Similarity=0.092 Sum_probs=202.8
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
..++++|||||.+++++....+..+...........+...+..+++.++++.+ ++++.|++|++||..++..+... .
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~-~- 98 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI-K- 98 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE-E-
T ss_pred ceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE-E-
Confidence 35799999999998887655433222222222333333468899999998887 46778899999999998665543 2
Q ss_pred ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE-
Q 015301 82 KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA- 159 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 159 (409)
+...|.+++|+++. ++++ .++.|++||+.+. +....... +...+++++ .++++
T Consensus 99 --~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------------------~~~~~~~s~--~~la~~ 153 (355)
T 3vu4_A 99 --VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------------------FGGVCEFSN--GLLVYS 153 (355)
T ss_dssp --CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------------------EEEEEEEET--TEEEEE
T ss_pred --CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------------------CCceEEEEc--cEEEEe
Confidence 34489999999764 4433 4789999999887 33222211 133455666 56666
Q ss_pred -EEecCeEEEEECCCCe----------------eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCe-EEEecccccccCC
Q 015301 160 -AGSDNFIYVYDLQANK----------------CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL-CKVWDRRCFISKG 221 (409)
Q Consensus 160 -~~~d~~i~v~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~ 221 (409)
|+.+|.|++||+.+++ .+..+.+|...|.+++|+ |++++|++++.||+ |++||++ .+
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~----~~ 228 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-RKSDMVATCSQDGTIIRVFKTE----DG 228 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC-TTSSEEEEEETTCSEEEEEETT----TC
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-CCCCEEEEEeCCCCEEEEEECC----CC
Confidence 5789999999998765 267789999999999999 79999999999998 9999975 67
Q ss_pred ceeeeee-c-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 222 RANGVLM-G-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 222 ~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
..+..+. + |...|.+++|+|++++|++++.|+.|++||++........... .. . .+. .. .....
T Consensus 229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~--~~-~------~~~----~~-~~~~~ 294 (355)
T 3vu4_A 229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK--GW-I------NMK----YF-QSEWS 294 (355)
T ss_dssp CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT--TT-E------ECC----CC-CCSSC
T ss_pred cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc--ce-e------ecc----cc-ccccc
Confidence 7788887 5 9999999999999999999999999999999874322111000 00 0 000 00 00000
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
...+.-..... .....++|++++++|++++.||.+++|++..++
T Consensus 295 ~~~~~~~~~~~---~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 295 LCNFKLSVDKH---VRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SEEEECCCCTT---CCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eeEEEeccCCC---CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00000000000 001234789999999999999999999986543
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1e-31 Score=232.92 Aligned_cols=286 Identities=14% Similarity=0.111 Sum_probs=215.0
Q ss_pred eeecCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w 112 (409)
.+.+| ..+.+++|+|+|+++ ++++.|+.|++||+.+++...... .. ..+.+++|+|++++|++++ .++.|++|
T Consensus 27 ~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-~~---~~v~~~~~spdg~~l~~~~~~~~~v~v~ 101 (391)
T 1l0q_A 27 TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-AG---SSPQGVAVSPDGKQVYVTNMASSTLSVI 101 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-CS---SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-CC---CCccceEECCCCCEEEEEECCCCEEEEE
Confidence 45555 458999999999987 677789999999999886554432 22 2799999999999886554 67999999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVC 191 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 191 (409)
|+.+++....... ...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++
T Consensus 102 d~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 164 (391)
T 1l0q_A 102 DTTSNTVAGTVKT----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIA 164 (391)
T ss_dssp ETTTTEEEEEEEC----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred ECCCCeEEEEEeC----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEE
Confidence 9988765332211 1248899999999987 67777999999999999988888765 5679999
Q ss_pred EeCCCCcEE-EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe---CCCcEEEeeCCCCcccc
Q 015301 192 FADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG---KDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 192 ~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~ 267 (409)
|+ ++++.+ ++++.++.|++||++ .+.....+. +...+.+++|+|+++++++++ .++.|++||+++.
T Consensus 165 ~~-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---- 234 (391)
T 1l0q_A 165 VT-PDGTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---- 234 (391)
T ss_dssp EC-TTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT----
T ss_pred EC-CCCCEEEEEeCCCCEEEEEECC----CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC----
Confidence 99 677666 677889999999975 455554443 566789999999999999888 6899999999872
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE-EEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI-YTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~v~i~d~~~~~ 346 (409)
+.+..+..+.. ...++++|++++| ++++.|+.|++||+.+++
T Consensus 235 ------------------------------~~~~~~~~~~~-------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 235 ------------------------------KITARIPVGPD-------PAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp ------------------------------EEEEEEECCSS-------EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ------------------------------eEEEEEecCCC-------ccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 33344443331 2456789999877 566889999999999999
Q ss_pred eEEEeccCCccee---ee------------EEecCc----------CeEEeecCCCeEEEEecCCCcc
Q 015301 347 QVAKLDFHNAPVR---DC------------CWHPIY----------PMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 347 ~~~~~~~~~~~v~---~~------------~~s~~~----------~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.+..+..|..+.. .+ .|+.+. -.+...+.|..+++|++..+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 278 ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred EEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 9888876655421 11 222221 2456667789999999976653
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.4e-33 Score=241.34 Aligned_cols=243 Identities=9% Similarity=0.029 Sum_probs=166.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee--eeeecccccceEEEEEeCC--------CCcEEEEEecCCEEE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ--KDIETKALRWTITDTSLSP--------DQRFLVYASICAIVN 110 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~ 110 (409)
..+....+++++.+||+++.|++|+|||.+++.... ......+|...|++++|+| |+++||+++.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 333344445566789999999999999999885443 2334678999999999998 789999999999999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCCCeeeeE----------
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQANKCSLR---------- 179 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~---------- 179 (409)
+||+.++....... .|..++.+++|+|++. +|++++.|+.|++||+.+++....
T Consensus 170 ~Wd~~~~~~~~~~~---------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 170 IWRLTDEGPILAGY---------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEETTEEEEEEE---------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred EEECCCCceeeeec---------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 99997765322111 2344799999999874 799999999999999987754322
Q ss_pred ---------------EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEE-------
Q 015301 180 ---------------IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFI------- 237 (409)
Q Consensus 180 ---------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~------- 237 (409)
..+|...+.++.|+++++..|++++.|+.+++||++ .......+..|...+..+
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCSEE
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEEEccccc
Confidence 235778899999988899999999999999999975 333333333333333222
Q ss_pred -----------EEcC--CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 238 -----------DSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 238 -----------~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
.++| ++.++++++.||.|++||+.+. .......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~----------------------------------~~~~~~~ 356 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK----------------------------------DSNSIPI 356 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT----------------------------------TCCEEEE
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC----------------------------------cEEEEec
Confidence 2333 3345677888999999999873 3333444
Q ss_pred cccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 305 GHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 305 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
+|. ..+.+++|+|||++||+++.+| +.+|.+.
T Consensus 357 ~~~------~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 357 QLG------MPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ECS------SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCC------CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 443 2356779999999999998776 6666653
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-33 Score=236.59 Aligned_cols=232 Identities=7% Similarity=-0.012 Sum_probs=179.9
Q ss_pred EeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC
Q 015301 92 SLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL 171 (409)
Q Consensus 92 ~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 171 (409)
.+.+++..|++|+.||.|++||+.+++...... ...|.++.|+|+ +++++.|+.|++|+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----------------~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----------------TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----------------EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----------------cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 455688999999999999999998876543322 114777888887 899999999999966
Q ss_pred C---------CCeeeeEEc-CCCCCeEEEEEeCC--CCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEE
Q 015301 172 Q---------ANKCSLRIP-AHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFID 238 (409)
Q Consensus 172 ~---------~~~~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~ 238 (409)
. +++.+..+. .|..+|.+++|+ | +++++++++.||.|++||++ .+...... ..|...+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~----~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYE----DDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESS----SSCEEEEECCCSSCCCCEEE
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECC----CCcEEEEEecCCCCceEEEE
Confidence 5 444444443 677899999999 7 89999999999999999976 45554444 34556899999
Q ss_pred EcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccce-eeeec-ccceeeeeEEE
Q 015301 239 SRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSL-ATYKG-HSVLRTLIRCY 316 (409)
Q Consensus 239 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~ 316 (409)
|+|++.+|++|+.||.|++||+++.. .+ ..+.. |. ..+
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~----------------------------------~~~~~~~~~h~------~~v 217 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPD----------------------------------QASSRFPVDEE------AKI 217 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTT----------------------------------SCCEECCCCTT------SCE
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCC----------------------------------CCccEEeccCC------CCE
Confidence 99999999999999999999998832 22 34444 54 345
Q ss_pred EeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc---CCccee--eeEEecCcCeEEeecC-CCeEEEEecCCCcc
Q 015301 317 FSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HNAPVR--DCCWHPIYPMLISSSW-DCNIVRWEIPGIGE 389 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~~~v~--~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~ 389 (409)
.+++|+|++.+|++++ |+.|++||+++++.+..+.. |...+. +++|+|++++|++++. |+.|++|++....+
T Consensus 218 ~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 218 KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 5678999999999999 55999999999887665543 444555 5999999999999888 99999999976543
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.3e-31 Score=232.14 Aligned_cols=291 Identities=12% Similarity=0.032 Sum_probs=214.4
Q ss_pred CCCCeEEEE---ECCCCCEEEEEe--------------CCCcEEEEEcCC--CeeeeeeeecccccceEEEEEeCCCCcE
Q 015301 39 MNSRVYTSQ---FSNDGSFFVAAS--------------QESNIKVYNVDK--NWKIQKDIETKALRWTITDTSLSPDQRF 99 (409)
Q Consensus 39 h~~~v~~~~---~s~~~~~l~t~~--------------~d~~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 99 (409)
....+..++ |+|+++.++..+ .++.+.||.++. +. ......... ...+.+++|+|++.+
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~-~~~~~~~~~s~~~~~ 136 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKT-GFQPKSVRFIDNTRL 136 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEEC-SSCBCCCEESSSSEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcC-CCCceEEEEeCCCeE
Confidence 445677888 888877665432 233234555433 31 111111111 224668999998788
Q ss_pred EEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE
Q 015301 100 LVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR 179 (409)
Q Consensus 100 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 179 (409)
+++++.++.|++||+.+++......... ..+|...|.+++|+++++++++++.|+.|++||+++++.+..
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEK----------YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHH----------HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCccc----------ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE
Confidence 8888889999999998876543221111 013455799999999999999999999999999999999988
Q ss_pred EcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe--------
Q 015301 180 IPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-------- 250 (409)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------- 250 (409)
+..|...+.+++|+ ++++.+ ++++.|+.|++||++ .+.....+.. ...+.+++|+|+++++++++
T Consensus 207 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~----~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 207 VDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRK----TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp EECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred EcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECC----CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCcccc
Confidence 98899999999999 677766 555589999999975 5555555554 35589999999999999888
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE-E
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI-Y 329 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~ 329 (409)
.||.|++||+++. +.+..+ .+. .....++|+|+++.+ +
T Consensus 281 ~dg~i~~~d~~~~----------------------------------~~~~~~-~~~------~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 281 GGGRLGIYSMDKE----------------------------------KLIDTI-GPP------GNKRHIVSGNTENKIYV 319 (433)
T ss_dssp CCEEEEEEETTTT----------------------------------EEEEEE-EEE------ECEEEEEECSSTTEEEE
T ss_pred CCCeEEEEECCCC----------------------------------cEEeec-cCC------CCcceEEECCCCCEEEE
Confidence 4889999999862 112221 111 123456789999754 6
Q ss_pred EEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecC---------------CCeEEEEecCCCcc
Q 015301 330 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSW---------------DCNIVRWEIPGIGE 389 (409)
Q Consensus 330 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------dg~i~iw~~~~~~~ 389 (409)
+++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.
T Consensus 320 ~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 66889999999999999888886 6778999999999998888765 57999999987543
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=3.9e-29 Score=223.34 Aligned_cols=334 Identities=11% Similarity=0.065 Sum_probs=231.1
Q ss_pred eeEEecCceeEeeccce---EEEEeeecCCCceee-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc--CCCeeeeeee
Q 015301 6 EVNYSGRGRFSAADSCH---VLSRYLPVNGPWKVD-GMNSRVYTSQFSNDGSFFVAASQESNIKVYNV--DKNWKIQKDI 79 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~---~~~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~--~~~~~~~~~~ 79 (409)
+-+++|+++++++.... .+++....+...++. +|. +.+++|+|||++|++++.|++|++||+ .++..+....
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 34578999877765433 233222222233555 443 999999999999999999999999999 6765544332
Q ss_pred ecccccceEEEEEeCC----CCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCc-ceeeEEEEEcCC
Q 015301 80 ETKALRWTITDTSLSP----DQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDED-EFGIFSVKFSTD 153 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~----~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 153 (409)
. ...+..++|+| +|++|++++ .+++|.+||..+.+........... .. ....| ...+..+.++|+
T Consensus 220 -~---g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~----~~-~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 220 -I---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----VD-TQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp -C---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----SS-SCCEESCCCEEEEEECSS
T ss_pred -c---CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc----cC-ccccccCCceEEEEECCC
Confidence 2 23689999999 999999988 4899999999887654433221100 00 00001 125889999997
Q ss_pred CCeE-EEEEecCeEEEEECCCCeeee--EEcCCCCCeEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCceeeeeec
Q 015301 154 GQEL-VAAGSDNFIYVYDLQANKCSL--RIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 154 ~~~l-~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
+..+ ++...++.|.+||+.+.+.+. .+. +...+.+++|+ |++++|+++ ..+++|.+||+. +++....+..
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~----tg~l~~~i~~ 364 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD-SSHRYFMTAANNSNKVAVIDSK----DRRLSALVDV 364 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceEC-CCCCEEEEEecCCCeEEEEECC----CCeEEEeecc
Confidence 7655 455568999999998876544 443 56678899999 788876654 568999999965 6666666553
Q ss_pred ----cccceeEEEEcCC-CCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeee
Q 015301 230 ----HLEGITFIDSRRD-GRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATY 303 (409)
Q Consensus 230 ----~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (409)
|.+....+ ++|+ +..++++. .|++|.+||+.+..... ...+.+..+
T Consensus 365 g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~---------------------------~~~~~v~~l 416 (543)
T 1nir_A 365 GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---------------------------YAWKKVAEL 416 (543)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------------------------TBTSEEEEE
T ss_pred CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch---------------------------hcCeEEEEE
Confidence 54433333 4676 55666665 58999999997621100 012445666
Q ss_pred ecccceeeeeEEEEeeeecCCCCEEEEEe-------CCCeEEEEEccCCceE-EEe--------ccCCcceeeeEEecCc
Q 015301 304 KGHSVLRTLIRCYFSPEYSTAQKYIYTGS-------SDNSVYIYDLVSGAQV-AKL--------DFHNAPVRDCCWHPIY 367 (409)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~v~i~d~~~~~~~-~~~--------~~~~~~v~~~~~s~~~ 367 (409)
.++.. ....+.++|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.|+|+|
T Consensus 417 ~~~g~------~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 417 QGQGG------GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp ECSCS------CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EcCCC------CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 66542 223457899999999987 2679999999999876 443 3467789999999999
Q ss_pred CeEEee-----cCCCeEEEEecCCCccc
Q 015301 368 PMLISS-----SWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 368 ~~l~s~-----~~dg~i~iw~~~~~~~~ 390 (409)
+.|+.+ +.|+.|.+||..+++..
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 977755 24799999999987654
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.98 E-value=1.5e-29 Score=225.97 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=212.7
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEc--CCCccccccc
Q 015301 47 QFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDV--GSSARESLAN 124 (409)
Q Consensus 47 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~--~~~~~~~~~~ 124 (409)
+|+|++.++++++.|++|.+||..+++.+..... ++ .+..++|+|++++|++++.|+.|++||+ .+++......
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 3889999999999999999999999866554322 22 2889999999999999999999999999 5554322111
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcC----CCCeEEEEEe-cCeEEEEECCCCeeeeEEcCC-----------CCCeE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFST----DGQELVAAGS-DNFIYVYDLQANKCSLRIPAH-----------KSDVN 188 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-----------~~~v~ 188 (409)
. ...+..++|+| +|+++++++. +++|.+||..+++++..+..+ ...+.
T Consensus 220 ~----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 220 I----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp C----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred c----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence 0 12478999999 9999999885 899999999999998887642 23788
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-eeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCccc
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSN 266 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 266 (409)
.+.++|..+.++++...++.|.+||+. ....+. ....+...+..+.|+|+|+++++++ .+++|.+||+.+.+
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~----~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-- 357 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYK----DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-- 357 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECT----TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE--
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEec----CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe--
Confidence 999995566778888899999999975 222222 1223556788899999999876655 58899999998843
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCC-CCEEEEEe-CCCeEEEEEccC
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTA-QKYIYTGS-SDNSVYIYDLVS 344 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~-~dg~v~i~d~~~ 344 (409)
.+..+.............+ ++|+ +.+++++. .|++|.+||+.+
T Consensus 358 --------------------------------l~~~i~~g~~ph~g~g~~~---~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 358 --------------------------------LSALVDVGKTPHPGRGANF---VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp --------------------------------EEEEEECSSSBCCTTCEEE---EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred --------------------------------EEEeeccCCCCCCCCCccc---CCCCCccEEEeccCCCceEEEEEeCC
Confidence 2333322110000000111 3566 66667765 589999999998
Q ss_pred -------CceEEEeccCCcceeeeEEecCcCeEEeec-------CCCeEEEEecCCCccc
Q 015301 345 -------GAQVAKLDFHNAPVRDCCWHPIYPMLISSS-------WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 345 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~dg~i~iw~~~~~~~~ 390 (409)
++.+.++.+|...+..++++|++++|++++ .++.|.+||+.+.+..
T Consensus 403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 899999999999999999999999999987 2779999999987643
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=4.6e-30 Score=208.30 Aligned_cols=258 Identities=12% Similarity=0.073 Sum_probs=168.5
Q ss_pred ceEEEEeeec---CCCceeecCCCCeEEEEECCCCCEEEEEe-CC-CcEEEEEcCCC---eeeeeeeecccccceEEEEE
Q 015301 21 CHVLSRYLPV---NGPWKVDGMNSRVYTSQFSNDGSFFVAAS-QE-SNIKVYNVDKN---WKIQKDIETKALRWTITDTS 92 (409)
Q Consensus 21 ~~~~~~~~~~---~~~~~l~~h~~~v~~~~~s~~~~~l~t~~-~d-~~i~vw~~~~~---~~~~~~~~~~~~~~~v~~~~ 92 (409)
...+|+.... ...+++.+|..+|..+.|.||..-|++.. .+ ..-.++.+.-. +.........+|...|..+
T Consensus 64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l- 142 (356)
T 2w18_A 64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL- 142 (356)
T ss_dssp EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE-
T ss_pred eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec-
Confidence 3344554443 33457889999999999988654333221 11 11112222111 1111112223344445544
Q ss_pred eCCCCcEEEEEe--cCCEEEEEEcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcC---CCCeEEEEEecCeE
Q 015301 93 LSPDQRFLVYAS--ICAIVNIVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFI 166 (409)
Q Consensus 93 ~s~~~~~l~~~~--~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i 166 (409)
++++.+.+++ .|+.|++|++.. ++...... .|...+..++|++ ++.+|++++.|++|
T Consensus 143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~---------------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TI 205 (356)
T 2w18_A 143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF---------------LMPPEETILTFAEVQGMQEALLGTTIMNNI 205 (356)
T ss_dssp --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE---------------ECCCSSCEEEEEEEETSTTEEEEEETTSEE
T ss_pred --CCCcEEEecccCCCCcEEEEEECCCCceeeeec---------------cCCCceeeEEeeccCCCCceEEEecCCCcE
Confidence 5666666643 588999999844 43222111 2333588888888 77999999999999
Q ss_pred EEEECCCCeeeeEEcCCC---CCeEEEEEeCCCCcEE------------EEeeCCCeEEEecccccccCCceeeee----
Q 015301 167 YVYDLQANKCSLRIPAHK---SDVNTVCFADETGHLI------------FSGSDDSLCKVWDRRCFISKGRANGVL---- 227 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 227 (409)
+|||+++++.+.++.+|. ..+.+++|+ |++.++ ++|+.|++|++||.. .+..+..+
T Consensus 206 kIWDl~TGk~l~tL~g~~~~v~~v~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~----tgk~l~v~~~~~ 280 (356)
T 2w18_A 206 VIWNLKTGQLLKKMHIDDSYQASVCHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPK----TTLSVGVMLYCL 280 (356)
T ss_dssp EEEETTTCCEEEEEECCC---CCCEEEEEE-ETTEEEEEEC------------CCEEEEEEETT----TTEEEEEEEECC
T ss_pred EEEECCCCcEEEEEcCCCcceeeeEEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECC----CCEEEEEEEeec
Confidence 999999999999997654 467788999 788876 567889999999965 55554443
Q ss_pred -eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecc
Q 015301 228 -MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 306 (409)
Q Consensus 228 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (409)
.+|...+.+..++ +.++++++.|++|+|||+.+ ++.+.++.+|
T Consensus 281 p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t----------------------------------Gk~l~tL~gH 324 (356)
T 2w18_A 281 PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL----------------------------------GQCTALLPPV 324 (356)
T ss_dssp CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCC
T ss_pred cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC----------------------------------CcEEEEecCC
Confidence 3555554444443 77899999999999999998 5667777777
Q ss_pred cceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEc
Q 015301 307 SVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDL 342 (409)
Q Consensus 307 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~ 342 (409)
.... ...++|||||++|++|+.|++|+|||+
T Consensus 325 ~~~v-----vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 SDQH-----WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --CC-----CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCe-----EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5321 123579999999999999999999995
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=3.4e-30 Score=223.71 Aligned_cols=288 Identities=14% Similarity=0.062 Sum_probs=208.8
Q ss_pred CCCCeEEEEECCCCC-EEEEEe----CCC----cEEEEEc--CCCeeeeeeeecccccceEEEEEeCC------------
Q 015301 39 MNSRVYTSQFSNDGS-FFVAAS----QES----NIKVYNV--DKNWKIQKDIETKALRWTITDTSLSP------------ 95 (409)
Q Consensus 39 h~~~v~~~~~s~~~~-~l~t~~----~d~----~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~s~------------ 95 (409)
+...+...+|++.|. ++++|+ .|| ++++||+ .+++.+.. ....+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-NSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-EEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-eEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 335778888988875 555776 467 8999999 88765422 22334444555555553
Q ss_pred --CCcEEEEEecC------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC---
Q 015301 96 --DQRFLVYASIC------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--- 164 (409)
Q Consensus 96 --~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--- 164 (409)
.+..++.++.+ +.|++||+......... .|...+.+++|+|+|++|++++.++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~----------------~~~~~v~~~~~Spdg~~la~~s~~~~~~ 203 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH----------------RSPQPLMSPAWSPDGSKLAYVTFESGRS 203 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE----------------EESSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEe----------------CCCCcceeeEEcCCCCEEEEEEecCCCc
Confidence 25667666654 79999999754322111 1233699999999999999999875
Q ss_pred eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE-EeeCCCe--EEEecccccccCCceeeeeeccccceeEEEEcC
Q 015301 165 FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSL--CKVWDRRCFISKGRANGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (409)
.|++||+.+++.. .+..|...+.+++|+ |+++.|+ +++.++. |++||++ .+. ...+..|...+.+++|+|
T Consensus 204 ~i~~~d~~tg~~~-~l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 204 ALVIQTLANGAVR-QVASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFP 276 (415)
T ss_dssp EEEEEETTTCCEE-EEECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----TCC-EEECCCCSSCEEEEEECT
T ss_pred EEEEEECCCCcEE-EeecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECC----CCC-EEeCcCCCCcccceEECC
Confidence 9999999998865 466688899999999 7888777 6666654 8999974 333 356667888999999999
Q ss_pred CCCeEEEEeC-CC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe
Q 015301 242 DGRYFISNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS 318 (409)
Q Consensus 242 ~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (409)
+|++|++++. ++ .|.+||+.+.. ...+..+. .....
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~------~~~~~ 315 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGA-----------------------------------PQRITWEG------SQNQD 315 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSC-----------------------------------CEECCCSS------SEEEE
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCC-----------------------------------EEEEecCC------CcccC
Confidence 9999988876 45 67777877622 11111121 12346
Q ss_pred eeecCCCCEEEEEeCC---CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC---eEEEEecCCCcccCC
Q 015301 319 PEYSTAQKYIYTGSSD---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC---NIVRWEIPGIGEAPL 392 (409)
Q Consensus 319 ~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~~~~~ 392 (409)
++|+|+|++|++++.+ ..|++||+.+++.. .+..|. .+.+++|+|++++|++++.|+ .|++||+........
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence 7899999999988864 58999999988774 455554 899999999999998888776 899999986554443
Q ss_pred C
Q 015301 393 P 393 (409)
Q Consensus 393 ~ 393 (409)
+
T Consensus 394 ~ 394 (415)
T 2hqs_A 394 P 394 (415)
T ss_dssp C
T ss_pred e
Confidence 3
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=3.6e-30 Score=223.54 Aligned_cols=264 Identities=15% Similarity=0.119 Sum_probs=199.0
Q ss_pred eeecCCCCeEEEEECC--------------CCCEEEEEeCC------CcEEEEEcCCCeeeeeeeecccccceEEEEEeC
Q 015301 35 KVDGMNSRVYTSQFSN--------------DGSFFVAASQE------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLS 94 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~--------------~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s 94 (409)
.+.+|...+..+++++ .+..++.++.+ +.|++||++.. ..... ..|...+.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l---~~~~~~v~~~~~S 187 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVV---HRSPQPLMSPAWS 187 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEE---EEESSCEEEEEEC
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEE---eCCCCcceeeEEc
Confidence 4778988888888775 25666666554 79999999854 33332 3355689999999
Q ss_pred CCCcEEEEEecCC---EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEecC--eEEE
Q 015301 95 PDQRFLVYASICA---IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDN--FIYV 168 (409)
Q Consensus 95 ~~~~~l~~~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~v 168 (409)
|+|++|++++.++ .|++||+.+++..... .+...+.+++|+|+|+.|+ +++.++ .|++
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~----------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVRQVA----------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEEEE----------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEEEee----------------cCCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 9999999999875 9999999987653221 1223589999999999888 555454 5999
Q ss_pred EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-CC--eEEEecccccccCCceeeeeeccccceeEEEEcCCCCe
Q 015301 169 YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DS--LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
||+.+++. ..+..|...+.+++|+ |+++.|++++. ++ .|.+||+. .+. ...+..+...+..++|+|+|++
T Consensus 252 ~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spdG~~ 324 (415)
T 2hqs_A 252 MDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNIN----GGA-PQRITWEGSQNQDADVSSDGKF 324 (415)
T ss_dssp EETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----SSC-CEECCCSSSEEEEEEECTTSSE
T ss_pred EECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECC----CCC-EEEEecCCCcccCeEECCCCCE
Confidence 99998875 5677788899999999 88988887775 45 57777854 333 3344556678899999999999
Q ss_pred EEEEeCC---CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 246 FISNGKD---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 246 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
|++++.+ ..|.+||+.+.. ...+..+. ...+++|+
T Consensus 325 l~~~~~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~-------~~~~~~~s 362 (415)
T 2hqs_A 325 MVMVSSNGGQQHIAKQDLATGG-----------------------------------VQVLSSTF-------LDETPSLA 362 (415)
T ss_dssp EEEEEECSSCEEEEEEETTTCC-----------------------------------EEECCCSS-------SCEEEEEC
T ss_pred EEEEECcCCceEEEEEECCCCC-----------------------------------EEEecCCC-------CcCCeEEc
Confidence 9988764 589999998732 12222221 23466899
Q ss_pred CCCCEEEEEeCCC---eEEEEEccCCceEEEeccCCcceeeeEEecCcC
Q 015301 323 TAQKYIYTGSSDN---SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 323 ~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
|+|++|++++.++ .|++||+. ++....+..|.+.|.+++|+|...
T Consensus 363 pdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 363 PNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 9999999988876 89999986 666788899999999999999654
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=7e-29 Score=232.71 Aligned_cols=285 Identities=13% Similarity=0.092 Sum_probs=208.4
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CC-----cEEEEEcCCCeeeeeeeeccccc----------------------ceEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQ-ES-----NIKVYNVDKNWKIQKDIETKALR----------------------WTITDT 91 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~-d~-----~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v~~~ 91 (409)
...|.+++|||||++|++++. |+ .|++||+.+++.... .....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 467999999999999999998 88 899999998854332 3222222 347889
Q ss_pred EeCCCCcEEEEEecCCEEEEEEcCCC---ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEE
Q 015301 92 SLSPDQRFLVYASICAIVNIVDVGSS---ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYV 168 (409)
Q Consensus 92 ~~s~~~~~l~~~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 168 (409)
+|+|||++|++++. +.|++||+.++ ...... .+...+..++|+|||++|++++ ++.|++
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~----------------~~~~~~~~~~~SPDG~~la~~~-~~~i~~ 176 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT----------------HGEGFATDAKLSPKGGFVSFIR-GRNLWV 176 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC----------------CSSSCEEEEEECTTSSEEEEEE-TTEEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc----------------cCCcccccccCCCCCCEEEEEe-CCcEEE
Confidence 99999999999886 99999999887 332211 1223589999999999999886 569999
Q ss_pred EECCCCeeeeEEcCCCCC----------------eEEEEEeCCCCcEEEEeeCCC-------------------------
Q 015301 169 YDLQANKCSLRIPAHKSD----------------VNTVCFADETGHLIFSGSDDS------------------------- 207 (409)
Q Consensus 169 ~d~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~~dg------------------------- 207 (409)
||+.+++.......+... +..++|+ |+++.|++++.|+
T Consensus 177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred EecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 999988766544444332 4789999 8999998887765
Q ss_pred --------eEEEecccccccC-Cceeeeee--ccccceeEEEEcCCCCeEEEEeC-----CCcEEEeeCCCCcccccccc
Q 015301 208 --------LCKVWDRRCFISK-GRANGVLM--GHLEGITFIDSRRDGRYFISNGK-----DQTTKLWDIRKMSSNTTDNS 271 (409)
Q Consensus 208 --------~i~iwd~~~~~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~ 271 (409)
.|.+||+. . +....... .|...+..++| |||++|++++. +..|.+||+.+..
T Consensus 256 ~g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------- 323 (741)
T 2ecf_A 256 AGDANVQVKLGVISPA----EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------- 323 (741)
T ss_dssp TTSCCCEEEEEEECSS----TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-------
T ss_pred CCCCCCeeEEEEEECC----CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-------
Confidence 78888964 3 33322222 46778999999 99999987654 5689999988732
Q ss_pred cccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc-CCceEEE
Q 015301 272 RLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-SGAQVAK 350 (409)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~-~~~~~~~ 350 (409)
....+..+... .......+.|+|||+++++++.||.++||.+. +++ ...
T Consensus 324 ---------------------------~~~~~~~~~~~--~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~ 373 (741)
T 2ecf_A 324 ---------------------------QRVLAHETSPT--WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA 373 (741)
T ss_dssp ---------------------------EEEEEEEECSS--CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE
T ss_pred ---------------------------eEEEEEcCCCC--cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee
Confidence 22222222100 00012356899999999999999988888765 455 778
Q ss_pred eccCCcceeee-EEecCcCeEE-eecCCC--eEEEEecCC
Q 015301 351 LDFHNAPVRDC-CWHPIYPMLI-SSSWDC--NIVRWEIPG 386 (409)
Q Consensus 351 ~~~~~~~v~~~-~~s~~~~~l~-s~~~dg--~i~iw~~~~ 386 (409)
+..|...|..+ .|+|+++.|+ +++.|+ .+++|++..
T Consensus 374 l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 374 LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 88888888887 5999998665 555555 899999864
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=4.7e-29 Score=233.85 Aligned_cols=328 Identities=12% Similarity=0.048 Sum_probs=220.1
Q ss_pred ceeeEEecCceeEeeccc-e------EEEEeee-cCCC-ceeecCCC------------------------CeEEEEECC
Q 015301 4 GREVNYSGRGRFSAADSC-H------VLSRYLP-VNGP-WKVDGMNS------------------------RVYTSQFSN 50 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~-~------~~~~~~~-~~~~-~~l~~h~~------------------------~v~~~~~s~ 50 (409)
...++|||||++++.... . .++.+-. .... ..+..|.. .|.+++|||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 568999999998776443 1 2222211 2222 23333332 388999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe--eeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceece
Q 015301 51 DGSFFVAASQESNIKVYNVDKNW--KIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEI 128 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 128 (409)
||++|++++. +.|++||+.++. .... ...+...+..++|+|||++|++++ ++.|++||+.+++..........
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~---l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQ---LTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCB---CCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEE---cccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999986 899999998762 2222 233445799999999999999887 56999999988764332221100
Q ss_pred eeeeeeecCC----CCcceeeEEEEEcCCCCeEEEEEecC---------------------------------eEEEEEC
Q 015301 129 HKGLDFSADG----DEDEFGIFSVKFSTDGQELVAAGSDN---------------------------------FIYVYDL 171 (409)
Q Consensus 129 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~---------------------------------~i~v~d~ 171 (409)
.. +.... ......+..++|+|||++|++++.|+ .|.+||+
T Consensus 194 --~~-~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 194 --TI-GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp --SE-EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred --ce-eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 00 00000 00001257799999999999998776 8999999
Q ss_pred CC-CeeeeEEc--CCCCCeEEEEEeCCCCcEEEEeeC-----CCeEEEecccccccCCceeeeeecccc----ceeEEEE
Q 015301 172 QA-NKCSLRIP--AHKSDVNTVCFADETGHLIFSGSD-----DSLCKVWDRRCFISKGRANGVLMGHLE----GITFIDS 239 (409)
Q Consensus 172 ~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~~ 239 (409)
.+ ++...... .|...+..++| ++++.|++++. +..|++||+. .+.....+..+.. .+..++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETT----TCCEEEEEEEECSSCCCCCSCCEE
T ss_pred CCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECC----CCceEEEEEcCCCCcCCcCCceEE
Confidence 88 77654432 47788999999 57777776543 5679999965 5555555554443 4568999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+|||+++++++.||.+++|.+... +. ...+..+.. .+..+
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~---------------------------------~~-~~~l~~~~~------~v~~~ 384 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSK---------------------------------GK-AAALTHGNW------SVDEL 384 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSS---------------------------------SC-EEESCCSSS------CEEEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCC---------------------------------CC-eeeeeecce------EEEeE
Confidence 999998889999998888876531 11 222333221 11233
Q ss_pred -eecCCCCEEEE-EeCCC--eEEEEEccC-CceEEEeccCCcceeeeEEecCcCeEEeecCC----CeEEEEecCC
Q 015301 320 -EYSTAQKYIYT-GSSDN--SVYIYDLVS-GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD----CNIVRWEIPG 386 (409)
Q Consensus 320 -~~s~~~~~l~~-~~~dg--~v~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~ 386 (409)
.|+|+++.|+. ++.++ .++||++.. ++....+.. ...+..++|+||+++|+....+ +.+.+|+...
T Consensus 385 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 385 LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 58999987755 44455 899999875 555667765 6678899999999977765433 5688998754
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=3e-28 Score=235.67 Aligned_cols=363 Identities=10% Similarity=0.029 Sum_probs=236.8
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE------SNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d------~~i~vw~~~~~~~~~~ 77 (409)
.+..+|||+....... ..++...........+.+|...|.+++|||||++||+++.+ ..|++|++.++. ...
T Consensus 17 ~~~~~~S~~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~ 94 (1045)
T 1k32_A 17 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKR 94 (1045)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEE
T ss_pred EeCcEEeCCEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEE
Confidence 4678899763222223 23222223345567889999999999999999999988643 379999998874 222
Q ss_pred eeecccccceE-------EEEEeCCCCcEEEEEecC------CEEEEEEcCCCccccccceecee---------------
Q 015301 78 DIETKALRWTI-------TDTSLSPDQRFLVYASIC------AIVNIVDVGSSARESLANVTEIH--------------- 129 (409)
Q Consensus 78 ~~~~~~~~~~v-------~~~~~s~~~~~l~~~~~d------g~i~~w~~~~~~~~~~~~~~~~~--------------- 129 (409)
...|...+ ..++|+|||+.+++++.+ ..|.+|++.+++...........
T Consensus 95 ---lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 95 ---ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp ---CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred ---cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 34455567 899999999977777644 46888888766543221110000
Q ss_pred --------------------eeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCCCCCeE
Q 015301 130 --------------------KGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAHKSDVN 188 (409)
Q Consensus 130 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~ 188 (409)
..-.+.. ..+|...+.++.|+++ ..+++++.++.+.+|.+.. +.....+..|. .+.
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~-l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 248 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY 248 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred CccccccccCCCcCCEEEECCCCCeEE-CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence 0000000 0245667889999988 5666777788888887653 33445555554 467
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-----------cccceeEEEEc-CCCCeEEEEeCCCcEE
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-----------HLEGITFIDSR-RDGRYFISNGKDQTTK 256 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~ 256 (409)
..+|+ ++++.|+.+ .++.|.+||+. . ..+..+.. |...+..++|+ |+|++|++++ ++.+.
T Consensus 249 ~~~~S-pDG~~la~~-~~~~i~~~d~~----~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 249 PRHLN-TDGRRILFS-KGGSIYIFNPD----T-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF 320 (1045)
T ss_dssp EEEEE-ESSSCEEEE-ETTEEEEECTT----T-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred eeeEc-CCCCEEEEE-eCCEEEEecCC----c-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence 78999 888888877 48999999962 2 22223332 44578999999 9999999887 78899
Q ss_pred EeeCCCCcccccccc---cccccccc-cccccccccceecc---ccCccceeeeecccceeeeeEEEEeeeecCCCCEEE
Q 015301 257 LWDIRKMSSNTTDNS---RLRDYDWD-YRWMEYPSYARRLK---HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY 329 (409)
Q Consensus 257 iwd~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 329 (409)
+|++........... ......|. ...+.+......+. .........+.++. ..+..++|||||++|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~------~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 321 IQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL------GNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp EECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC------CSEEEEEECTTSSEEE
T ss_pred EEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCc------cceeeeEECCCCCEEE
Confidence 999876543221110 11111111 11111111001111 11111112222221 2345678999999999
Q ss_pred EEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC----------eEEEEecCCCc
Q 015301 330 TGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC----------NIVRWEIPGIG 388 (409)
Q Consensus 330 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----------~i~iw~~~~~~ 388 (409)
+++.++.|++||+.+++....+.+|...+.+++|+|||++|++++.++ .|++||+.++.
T Consensus 395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 999999999999999998888878999999999999999998887654 89999998764
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=2.2e-28 Score=236.56 Aligned_cols=330 Identities=12% Similarity=0.102 Sum_probs=233.4
Q ss_pred ceeeEEecCceeEeeccce------EEEEee--ecCCCceeecCCCCe-------EEEEECCCCCEEEEEeCC------C
Q 015301 4 GREVNYSGRGRFSAADSCH------VLSRYL--PVNGPWKVDGMNSRV-------YTSQFSNDGSFFVAASQE------S 62 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~------~~~~~~--~~~~~~~l~~h~~~v-------~~~~~s~~~~~l~t~~~d------~ 62 (409)
..+++|||||++++..... .....+ .......+.+|...+ .+++|||||+++++++.+ .
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~ 134 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMT 134 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCC
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccc
Confidence 4689999999988864321 111222 233356788999888 999999999977777754 3
Q ss_pred cEEEEEcCCCeeeeee----------------------------------------------eecccccceEEEEEeCCC
Q 015301 63 NIKVYNVDKNWKIQKD----------------------------------------------IETKALRWTITDTSLSPD 96 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~~s~~ 96 (409)
.|++|++.++...... .....|...+.++.|+++
T Consensus 135 ~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d 214 (1045)
T 1k32_A 135 CLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH 214 (1045)
T ss_dssp EEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT
T ss_pred eEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC
Confidence 5788887665321100 011234556778889888
Q ss_pred CcEEEEEecCCEEEEEEcCC--CccccccceeceeeeeeeecCCC------------------------C----------
Q 015301 97 QRFLVYASICAIVNIVDVGS--SARESLANVTEIHKGLDFSADGD------------------------E---------- 140 (409)
Q Consensus 97 ~~~l~~~~~dg~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------------~---------- 140 (409)
.++++++.++.+.+|.+.. +.......... .....+.+++. .
T Consensus 215 -~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~ 292 (1045)
T 1k32_A 215 -RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRI 292 (1045)
T ss_dssp -EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEE
T ss_pred -EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccccccc
Confidence 6667777888888887653 22211111110 11112222211 0
Q ss_pred -cceeeEEEEEc-CCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC-CeEEEEEeCCCCcEEEEeeCCCeEE-Eecccc
Q 015301 141 -DEFGIFSVKFS-TDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS-DVNTVCFADETGHLIFSGSDDSLCK-VWDRRC 216 (409)
Q Consensus 141 -~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~-iwd~~~ 216 (409)
|...+.+++|+ |+|++|++++ ++.|.+|++.+++.. .+..|.. .+..++|+ +++.|+.++.++.+. +||+.
T Consensus 293 ~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~- 367 (1045)
T 1k32_A 293 ISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYR- 367 (1045)
T ss_dssp EECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETT-
T ss_pred ccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECC-
Confidence 22358899999 9999999887 889999999887654 3566777 89999998 788888888888888 88864
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccC
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPH 296 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (409)
.+.. ..+..|...+..++|+|||++|++++.++.|++||+.+.
T Consensus 368 ---~~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg--------------------------------- 410 (1045)
T 1k32_A 368 ---TGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--------------------------------- 410 (1045)
T ss_dssp ---TCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---------------------------------
T ss_pred ---CCCc-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---------------------------------
Confidence 3333 334477788999999999999999999999999999873
Q ss_pred ccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC----------eEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 297 DQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN----------SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----------~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
.......++. ..+..++|||||++|++++.++ .|++||+.+++ +..+..|...+..++|+||
T Consensus 411 -~~~~~~~~~~------~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 411 -KPTVIERSRE------AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp -CEEEEEECSS------SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT
T ss_pred -ceEEeccCCC------CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC
Confidence 2222332333 1234568999999999887654 89999999887 6777788888999999999
Q ss_pred cCeEEeecCCCeEEEEecC
Q 015301 367 YPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 367 ~~~l~s~~~dg~i~iw~~~ 385 (409)
|++|++++.++...+|+..
T Consensus 483 G~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 483 SKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp SCEEEEEESCCCCCEECSS
T ss_pred CCEEEEEecccCCcCcchh
Confidence 9999999988888888754
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.97 E-value=3.6e-28 Score=227.35 Aligned_cols=324 Identities=11% Similarity=0.067 Sum_probs=211.2
Q ss_pred ceeeEEecCceeEeecc--ceEEEEeeecCCCceeecCCC---CeEEEEECCCCCEEEEEeCC---------CcEEEEEc
Q 015301 4 GREVNYSGRGRFSAADS--CHVLSRYLPVNGPWKVDGMNS---RVYTSQFSNDGSFFVAASQE---------SNIKVYNV 69 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~--~~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~~~~l~t~~~d---------~~i~vw~~ 69 (409)
..+++|||||++++... ...++..........+.+|.. .|.+++|||||++|++++.+ +.+++||+
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 56789999999877632 223343333344445566665 49999999999999999764 77889999
Q ss_pred CCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCC-----CCccee
Q 015301 70 DKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADG-----DEDEFG 144 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 144 (409)
+++.. ........+...+..++|||||+.|++++. +.|++||+.+++......... ....+.... ++....
T Consensus 99 ~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~--~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 99 PHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGK--EGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp SSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCB--TTTEEEEECCHHHHHTTSSS
T ss_pred CCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCC--CCceECcccceeEEEEeccC
Confidence 98754 333333444445888999999999999885 799999998876533221100 000000000 000012
Q ss_pred eEEEEEcCCCCeEEEEEecC----------------------------------eEEEEECCCCeeeeEEcCC------C
Q 015301 145 IFSVKFSTDGQELVAAGSDN----------------------------------FIYVYDLQANKCSLRIPAH------K 184 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~----------------------------------~i~v~d~~~~~~~~~~~~~------~ 184 (409)
+.+++|+|||+.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 47899999999999988653 7999999988865556544 5
Q ss_pred CCeEEEEEeCCCCcEEEEeeC----CCeEEEecccccccCCceeeeeecc-ccce----eEEEEcCCCCeEEEE--eCCC
Q 015301 185 SDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGRANGVLMGH-LEGI----TFIDSRRDGRYFISN--GKDQ 253 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v----~~~~~~~~~~~l~~~--~~dg 253 (409)
..+..++|+ |++++|++... +..|++||+. .++....+..+ ...+ ..++|+|||+.|+.. ..++
T Consensus 255 ~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 255 YYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp EEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred ceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCC----CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 678999999 88988877653 3579999964 45544444332 3333 378999999987754 4566
Q ss_pred ------cEEEeeC-CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCC
Q 015301 254 ------TTKLWDI-RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQK 326 (409)
Q Consensus 254 ------~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 326 (409)
.|.+||+ ..... .....+..... .....++|+|||+
T Consensus 330 ~~~~~~~l~~~d~~~~~~~--------------------------------~~~~~l~~~~~-----~~~~~~~~spdg~ 372 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSN--------------------------------DNIQSITSGDW-----DVTKILAYDEKGN 372 (723)
T ss_dssp SSSCEEEEEEECSSCCSSS--------------------------------CCCCBSCCSSS-----CEEEEEEEETTTT
T ss_pred CCcceeEEEEEeccCCCCc--------------------------------cceeEeecCCe-----EEEeeeEEcCCCC
Confidence 4666773 32110 00111111110 0112257999999
Q ss_pred EEEEEeCC---CeEEEEEccCCc--eEEEecc---CCcceeeeEEecCcCeEEee
Q 015301 327 YIYTGSSD---NSVYIYDLVSGA--QVAKLDF---HNAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 327 ~l~~~~~d---g~v~i~d~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~s~ 373 (409)
.|+..+.+ +.++||++.... ....+.. |...+..++|+||+++|+..
T Consensus 373 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 373 KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 99766655 789999986432 3344443 66778999999999977654
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.97 E-value=1.3e-27 Score=203.27 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=186.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-CEEEEEEcC--CCccccccceeceee
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-AIVNIVDVG--SSARESLANVTEIHK 130 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~~w~~~--~~~~~~~~~~~~~~~ 130 (409)
++++++.|+.|++|+++........ ....+...+.+++|+|++++|++++.+ +.|.+|++. +++.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--- 82 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--- 82 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEe-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---
Confidence 3444477999999999633222211 112244478899999999999988876 999999997 443322111110
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECC---CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-C
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQ---ANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-D 205 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~ 205 (409)
...+..++|+|++++|++++. ++.|.+||+. +.+....+.. ...+.+++|+ ++++++++++ .
T Consensus 83 -----------~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~ 149 (343)
T 1ri6_A 83 -----------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANIS-PDNRTLWVPALK 149 (343)
T ss_dssp -----------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEEC-TTSSEEEEEEGG
T ss_pred -----------CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEEC-CCCCEEEEecCC
Confidence 114788999999998877765 7899999994 4444555554 3468899999 7888777776 8
Q ss_pred CCeEEEecccccccCCceee----eeec-cccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccc
Q 015301 206 DSLCKVWDRRCFISKGRANG----VLMG-HLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 206 dg~i~iwd~~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
++.|.+||+.. .+.... .... ....+..++|+|+++++++++ .++.|.+||+........
T Consensus 150 ~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~----------- 215 (343)
T 1ri6_A 150 QDRICLFTVSD---DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE----------- 215 (343)
T ss_dssp GTEEEEEEECT---TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE-----------
T ss_pred CCEEEEEEecC---CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE-----------
Confidence 99999999751 132221 2222 334678899999999776554 789999999964111000
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-eCCCeEEEEEcc----CCceEEEeccC
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-SSDNSVYIYDLV----SGAQVAKLDFH 354 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~v~i~d~~----~~~~~~~~~~~ 354 (409)
....................++|+|++++|+++ ..++.|.+||+. +.+.+..+..+
T Consensus 216 -------------------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 276 (343)
T 1ri6_A 216 -------------------CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE 276 (343)
T ss_dssp -------------------EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS
T ss_pred -------------------EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC
Confidence 000111000000001122356799999888754 478999999998 23455556555
Q ss_pred CcceeeeEEecCcCeEEeec-CCCeEEEEecC
Q 015301 355 NAPVRDCCWHPIYPMLISSS-WDCNIVRWEIP 385 (409)
Q Consensus 355 ~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 385 (409)
.. +..++|+|++++|++++ .|+.|.+|+++
T Consensus 277 ~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 277 TQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred Cc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 44 89999999999877776 68999999665
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=2.6e-27 Score=220.85 Aligned_cols=326 Identities=9% Similarity=0.050 Sum_probs=213.7
Q ss_pred eeEEecCceeEeeccceEEEEeeecCCC-ceeecCC-----------------CCeEEEEECCCCCEEEEEeCCCcEEEE
Q 015301 6 EVNYSGRGRFSAADSCHVLSRYLPVNGP-WKVDGMN-----------------SRVYTSQFSNDGSFFVAASQESNIKVY 67 (409)
Q Consensus 6 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~l~~h~-----------------~~v~~~~~s~~~~~l~t~~~d~~i~vw 67 (409)
.+.|+ +++|+......++++....... ..+..|. ..|.+++|||| +.++.+. ++.|++|
T Consensus 30 ~~~w~-g~~~~~~~~~~i~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~ 106 (706)
T 2z3z_A 30 GLQWM-GDNYVFIEGDDLVFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGF 106 (706)
T ss_dssp TCEEE-TTEEEEEETTEEEEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEE
T ss_pred CCcCc-CCeEEEEeCCcEEEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEE
Confidence 46788 6666655433333332222221 4444443 56999999999 6666554 5999999
Q ss_pred EcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC-----Cccccccceece--eeeeeeecCCCC
Q 015301 68 NVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-----SARESLANVTEI--HKGLDFSADGDE 140 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~ 140 (409)
|+.++... .... +...+.+++|+|||++|+++ .++.|++|++.+ ++.......... ..+.. ....
T Consensus 107 d~~~~~~~-~l~~---~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~---~~~e 178 (706)
T 2z3z_A 107 DMLARKVT-YLFD---TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA---VHQR 178 (706)
T ss_dssp ETTTTEEE-EEEC---CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC---CGGG
T ss_pred ECCCCceE-EccC---CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc---hhhh
Confidence 99887433 2222 23467889999999999985 689999999987 654322211110 00000 0001
Q ss_pred cceeeEEEEEcCCCCeEEEEE---------------------------------ecCeEEEEECCCCeeeeEE--cCCCC
Q 015301 141 DEFGIFSVKFSTDGQELVAAG---------------------------------SDNFIYVYDLQANKCSLRI--PAHKS 185 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~---------------------------------~d~~i~v~d~~~~~~~~~~--~~~~~ 185 (409)
+...+.+++|+|||++|++++ .+..|++||+.+++..... ..|..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 112357899999999999987 3478999999988765443 24667
Q ss_pred CeEEEEEeCCCCcEEEEeeCCC-----eEEEecccccccCCceeeeee-c-ccc---ceeEEEEcC--CCCeEEEEeCCC
Q 015301 186 DVNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKGRANGVLM-G-HLE---GITFIDSRR--DGRYFISNGKDQ 253 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~-~-~~~---~v~~~~~~~--~~~~l~~~~~dg 253 (409)
.+.+++|+ |+++.|++++.++ .|++||+. .+.....+. . +.. .+..+.|+| +|++++++..|+
T Consensus 259 ~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 259 FLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp EEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred eEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 89999999 8999998887775 89999965 442222222 1 221 246789999 999999999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEe-eeecCCCCEEEEEe
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFS-PEYSTAQKYIYTGS 332 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~ 332 (409)
.+++|++... +..+..+..+.. .+.. ++|+|+++.|+.++
T Consensus 334 ~~~l~~~~~~---------------------------------~~~~~~l~~~~~------~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 334 WNHLYLYDTT---------------------------------GRLIRQVTKGEW------EVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp SCEEEEEETT---------------------------------SCEEEECCCSSS------CEEEEEEECTTSSEEEEEE
T ss_pred ccEEEEEECC---------------------------------CCEEEecCCCCe------EEEeeeEEcCCCCEEEEEe
Confidence 9999987521 122233333221 1122 57899998876655
Q ss_pred CC-C----eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCC----CeEEEEecCCCc
Q 015301 333 SD-N----SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWD----CNIVRWEIPGIG 388 (409)
Q Consensus 333 ~d-g----~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~ 388 (409)
.+ + .|+.||+.+++ ...+. |...+.+++|+||+++|+..+.+ +.|++||+.+++
T Consensus 375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 44 4 67777877765 34444 67779999999999987765433 569999997764
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=2e-27 Score=197.73 Aligned_cols=257 Identities=14% Similarity=0.131 Sum_probs=187.3
Q ss_pred EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC-Cccccccceeceeeeeeee
Q 015301 57 AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS-SARESLANVTEIHKGLDFS 135 (409)
Q Consensus 57 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~ 135 (409)
.++.|++|++||+.+++.. ... .|...|.+++|+|++++|++++ ++.|++||+.+ ++.......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~---~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---------- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVW---QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---------- 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEE---EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT----------
T ss_pred CCCcceeEEEEeCCCCcee-eec---cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc----------
Confidence 3467899999999988543 222 2455899999999999999886 88999999988 654322211
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEEEe--c--CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEE-EeeCCCeEE
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAAGS--D--NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIF-SGSDDSLCK 210 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~ 210 (409)
.+...+.+++|+|++++|++++. + ..|..++..+++ ...+..+ ..+..++|+ ++++.|+ +++.++.++
T Consensus 82 ----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~s-pdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 82 ----FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWS-PDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp ----TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEEC-TTSSEEEEEEEETTEEE
T ss_pred ----cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEEC-CCCCEEEEEECCCCceE
Confidence 11235888999999999999983 2 455555655555 3344433 358999999 7777666 788899999
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
+|+++. .......+..+...+.++.|+|++++|++++ .++.+.+|++...
T Consensus 155 l~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~-------------------------- 205 (297)
T 2ojh_A 155 IYSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD-------------------------- 205 (297)
T ss_dssp EEEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------------------------
T ss_pred EEEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--------------------------
Confidence 999751 2334455667778899999999999888766 5889999987631
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-----------CeEEEEEccCCce--EEEeccCCc
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-----------NSVYIYDLVSGAQ--VAKLDFHNA 356 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----------g~v~i~d~~~~~~--~~~~~~~~~ 356 (409)
...+..+..+. ..+..+.|+|++++|++++.+ +.|++||+.+++. +..+.+|..
T Consensus 206 -------~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 272 (297)
T 2ojh_A 206 -------GSSVERITDSA------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG 272 (297)
T ss_dssp -------SSCEEECCCCS------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT
T ss_pred -------CCCcEEEecCC------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc
Confidence 12233333332 234567899999999988876 5699999988865 444557888
Q ss_pred ceeeeEEecCcCeEEeecCCC
Q 015301 357 PVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 357 ~v~~~~~s~~~~~l~s~~~dg 377 (409)
.+..++|+|++++|++++.|.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 999999999999888876653
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=4.9e-26 Score=192.53 Aligned_cols=280 Identities=14% Similarity=0.129 Sum_probs=189.5
Q ss_pred EECCCCCE-EEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEEEEcCCCcc-cccc
Q 015301 47 QFSNDGSF-FVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSAR-ESLA 123 (409)
Q Consensus 47 ~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~w~~~~~~~-~~~~ 123 (409)
.|.+++++ +++.+.++.|.+||.++++...... . +...+ .++|+|+++++++++. ++.|.+||..+++. ....
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-L--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-C--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-c--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 45666555 6777889999999999886554433 2 22356 9999999997776665 88999999988764 1111
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC---eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN---FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
.. +..+..+++|+|++++++++..++ .|.+||+.+++.+..+.. ...+.+++|+ |+++++
T Consensus 80 ~~---------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-pdg~~l 142 (331)
T 3u4y_A 80 QE---------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS-PNGNGL 142 (331)
T ss_dssp EE---------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC-TTSSCE
T ss_pred cc---------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC-CCCCEE
Confidence 10 111344499999999999555443 899999999998887764 4457999999 777644
Q ss_pred -EEeeCCCe-EEEecccccccCCcee---eeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCccccccccccc
Q 015301 201 -FSGSDDSL-CKVWDRRCFISKGRAN---GVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 201 -~~~~~dg~-i~iwd~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
++...++. +.+|++.. .+... ............++|+|+|++++++ ..++.|.+||+.+....
T Consensus 143 ~~~~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-------- 211 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDA---DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-------- 211 (331)
T ss_dssp EEEEETTTTEEEEEEECT---TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC--------
T ss_pred EEEecCCCceEEEEEECC---CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc--------
Confidence 45556688 99999752 11111 1112334567899999999966555 46889999999873320
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEEEccCCce--EEEe
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDLVSGAQ--VAKL 351 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~d~~~~~~--~~~~ 351 (409)
..+..+... .....++|+|+|++|++++ .++.|.+||+.+++. +..+
T Consensus 212 -----------------------~~~~~~~~~-------~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~ 261 (331)
T 3u4y_A 212 -----------------------TLLNAVGTN-------NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSF 261 (331)
T ss_dssp -----------------------EEEEEEECS-------SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEE
T ss_pred -----------------------ceeeeccCC-------CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccc
Confidence 002222222 1123567999999776665 478899999998877 4443
Q ss_pred ccC----Ccc---eeeeEEecCcCeEEee-cCCCeEEEEecCCCc
Q 015301 352 DFH----NAP---VRDCCWHPIYPMLISS-SWDCNIVRWEIPGIG 388 (409)
Q Consensus 352 ~~~----~~~---v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~ 388 (409)
..+ ... ...++|+||+++|+++ ..++.|.+||+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 262 GHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp ECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 322 222 2458999999977554 556799999998654
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=4.5e-26 Score=194.58 Aligned_cols=282 Identities=11% Similarity=0.042 Sum_probs=206.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEE
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQ-------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIV 109 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~-------d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i 109 (409)
.....+..++|+|+|+++++++. ++.|.+||..+++....... . ..+..++|+|++++++++ ..++.|
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-D---LKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-S---SCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-C---CCcceEEECCCCCEEEEEecCCCEE
Confidence 34567889999999999888774 56899999998865544332 2 246789999999966555 557999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.+||..+++............. .......+.+++|+|+++++++++. ++.|.+||..+++.+..+..+...+
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRT------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCC------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred EEEeCCCCeeEEEEecCCCccc------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 9999988765333222110000 0001113788999999998887763 7889999999999988887666678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----cccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----HLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 262 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 262 (409)
.+++|+ ++++.+++++.++.|.+||+. .++....+.. +...+..++|+|+++++++++. ++.|.+||+.+
T Consensus 188 ~~~~~s-~dg~~l~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 188 TGLALD-SEGKRLYTTNADGELITIDTA----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCCEEE-TTTTEEEEECTTSEEEEEETT----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred ceEEEC-CCCCEEEEEcCCCeEEEEECC----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 999999 889999999999999999965 5555554443 4556788999999997776665 58999999977
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEEE
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYD 341 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~d 341 (409)
.+ .+..+..... ..++|+|+++++++++ .++.|.+||
T Consensus 263 ~~----------------------------------~~~~~~~~~~--------~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 263 GN----------------------------------ILAKVAAPES--------LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CC----------------------------------EEEEEECSSC--------CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred Cc----------------------------------EEEEEEcCCC--------ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 32 2222222111 2457899999666555 689999999
Q ss_pred ccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 342 LVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 342 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
..+++.+..+..+ ..+.+++|+|++++|+.+..++
T Consensus 301 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 301 AKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999998888754 4779999999999777665553
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=2.9e-28 Score=227.91 Aligned_cols=292 Identities=12% Similarity=0.078 Sum_probs=199.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---------CEEEE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---------AIVNI 111 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~~ 111 (409)
..+.+++|+|||+++++ +.||+|++||+.+++..............|.+++|||||++|++++.+ +.+.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 44788999999998776 689999999999885543322111111248999999999999999764 78999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe----
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV---- 187 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v---- 187 (409)
||+.+++....... ..+...+..++|+|||+.|++++. +.|++||+.+++.......+...+
T Consensus 96 ~d~~~~~~~~l~~~-------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 96 SKIPHGDPQSLDPP-------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp EESSSCCCEECCCT-------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred EECCCCceEeccCC-------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECc
Confidence 99988765222111 122334788999999999998875 799999999988776665444433
Q ss_pred --------------EEEEEeCCCCcEEEEeeCCC----------------------------------eEEEeccccccc
Q 015301 188 --------------NTVCFADETGHLIFSGSDDS----------------------------------LCKVWDRRCFIS 219 (409)
Q Consensus 188 --------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~ 219 (409)
.+++|+ |+++.|++++.|+ .|++||+.
T Consensus 162 ~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~---- 236 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN---- 236 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS----
T ss_pred ccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC----
Confidence 789999 8999998887543 78999964
Q ss_pred CCceeeeeecc------ccceeEEEEcCCCCeEEEEeC----CCcEEEeeCCCCcccccccccccccccccccccccccc
Q 015301 220 KGRANGVLMGH------LEGITFIDSRRDGRYFISNGK----DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYA 289 (409)
Q Consensus 220 ~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (409)
.+.....+..+ ...+..++|+|||+++++... +..|.+||+.+..
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~------------------------- 291 (723)
T 1xfd_A 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV------------------------- 291 (723)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-------------------------
T ss_pred CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-------------------------
Confidence 33333334333 567899999999998876643 3579999987732
Q ss_pred eeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE--EeCCC------eEEEEE-ccCCc--eEEEeccCCcce
Q 015301 290 RRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDN------SVYIYD-LVSGA--QVAKLDFHNAPV 358 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg------~v~i~d-~~~~~--~~~~~~~~~~~v 358 (409)
....+..+... ........+.|+|||+.|+. +..++ .|++|| ..+++ +...+..+...+
T Consensus 292 ---------~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 292 ---------CTKKHEDESEA-WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp ---------EEEEEEEECSS-CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred ---------ceEEEEeccCC-EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 12222111100 00000125689999997775 44566 577777 34444 145555444445
Q ss_pred ee-eEEecCcCeEEeecCC---CeEEEEecCCC
Q 015301 359 RD-CCWHPIYPMLISSSWD---CNIVRWEIPGI 387 (409)
Q Consensus 359 ~~-~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 387 (409)
.. ++|+||++.|+..+.+ +.+++|++...
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 54 6999999988765544 78999998643
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=8.4e-26 Score=210.65 Aligned_cols=319 Identities=14% Similarity=0.082 Sum_probs=207.9
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-----Ceeeee
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-----NWKIQK 77 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-----~~~~~~ 77 (409)
...+++||||+.++++.+..+............+..+...+.+++|||||++||++ .|+.|++|++.+ ++....
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~ 161 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV 161 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe
Confidence 46789999996655554433332222333445667788889999999999999985 679999999987 643322
Q ss_pred eeecccc-----------cceEEEEEeCCCCcEEEEEe---------------------------------cCCEEEEEE
Q 015301 78 DIETKAL-----------RWTITDTSLSPDQRFLVYAS---------------------------------ICAIVNIVD 113 (409)
Q Consensus 78 ~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~---------------------------------~dg~i~~w~ 113 (409)
....... ...+.+++|+|||++|++++ .+..|.+||
T Consensus 162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 1111110 01147899999999999987 346799999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----eEEEEECCCCeeeeEE-c-CCCC-
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQANKCSLRI-P-AHKS- 185 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~-~-~~~~- 185 (409)
+.+++....... ..+...+.+++|+|||++|++++.++ .|.+||+.+++....+ . .+..
T Consensus 242 ~~~~~~~~~~~~-------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 308 (706)
T 2z3z_A 242 LATGKTVYLQTG-------------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY 308 (706)
T ss_dssp TTTTEEEECCCC-------------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred CCCCceEeeccC-------------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence 988764322210 12344689999999999999988775 9999999998333333 2 2222
Q ss_pred --CeEEEEEeCC--CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeE-EEEcCCCCeEEEEeCC-C----cE
Q 015301 186 --DVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF-IDSRRDGRYFISNGKD-Q----TT 255 (409)
Q Consensus 186 --~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d-g----~i 255 (409)
.+..++|+ + +++++++++.||.+++|++. ..+.....+..+...+.. ++|+|+++.|+.++.+ + .|
T Consensus 309 ~~~~~~~~~s-p~~dg~~l~~~~~~g~~~l~~~~---~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 309 VEPLHPLTFL-PGSNNQFIWQSRRDGWNHLYLYD---TTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp CCCCSCCEEC-TTCSSEEEEEECTTSSCEEEEEE---TTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred ECccCCceee-cCCCCEEEEEEccCCccEEEEEE---CCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 34678999 7 88999999999999999864 245556666777777876 7999999988766554 3 56
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD- 334 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d- 334 (409)
..||+.+.. ...+. +. ..+..++|||||++|+....+
T Consensus 385 ~~~d~~~~~-----------------------------------~~~l~-~~------~~~~~~~~spdg~~l~~~~~~~ 422 (706)
T 2z3z_A 385 YCIDIKGGK-----------------------------------TKDLT-PE------SGMHRTQLSPDGSAIIDIFQSP 422 (706)
T ss_dssp EEEETTCCC-----------------------------------CEESC-CS------SSEEEEEECTTSSEEEEEEECS
T ss_pred EEEEcCCCC-----------------------------------ceecc-CC------CceEEEEECCCCCEEEEEecCC
Confidence 666655421 11111 11 113456899999988877544
Q ss_pred ---CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC--eEEEEec
Q 015301 335 ---NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC--NIVRWEI 384 (409)
Q Consensus 335 ---g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iw~~ 384 (409)
+.|++||+.+++ ...+. +..++....|.+.....+ -+.|| .+..|-.
T Consensus 423 ~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAMPEIRTGTI-MAADGQTPLYYKLT 474 (706)
T ss_dssp SCSCEEEEEESSSCE-EEEEE-CC------CCCCEEEEEE-ECTTSSSEEEEEEE
T ss_pred CCCcEEEEEECCCCe-Eeecc-ccchhhhcCCCCcEEEEE-EcCCCCEEEEEEEE
Confidence 569999998887 43333 444455555543332223 33455 5665544
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.95 E-value=2.8e-25 Score=189.10 Aligned_cols=276 Identities=12% Similarity=0.051 Sum_probs=177.1
Q ss_pred CCcEEEEEcCCCe-eeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 61 ESNIKVYNVDKNW-KIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 61 d~~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
++.|.+|+++... .+.. .....+...+..++|+|+++ |++++. ++.|.+|++.+++.........
T Consensus 15 ~~~i~v~~~d~~tg~~~~-~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~--------- 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTN-DGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA--------- 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEE-EEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE---------
T ss_pred CCCEEEEEEcCCCCeEEE-eeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec---------
Confidence 4568888775421 2222 11222334678899999999 665554 6899999997665432222111
Q ss_pred CCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECC-CCe--eeeEEcC---------CCCCeEEEEEeCCCCcEEEEe
Q 015301 137 DGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQ-ANK--CSLRIPA---------HKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~-~~~--~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~ 203 (409)
+...+..++|+|+|++|++++ .++.|.+|++. ++. .+..+.. +...+.+++|+ |+++++++.
T Consensus 84 ----~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~ 158 (347)
T 3hfq_A 84 ----PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVID 158 (347)
T ss_dssp ----ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEE
T ss_pred ----CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEe
Confidence 122578899999999998888 67999999996 332 2333321 12348899999 777877777
Q ss_pred eCCCeEEEecccccccCCcee--eeeec-cccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 204 SDDSLCKVWDRRCFISKGRAN--GVLMG-HLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
..++.|.+||+.. .+... ..... ....+..++|+|+|+++++ ...++.+.+|++.......
T Consensus 159 ~~~~~v~~~~~~~---~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~------------ 223 (347)
T 3hfq_A 159 LGSDKVYVYNVSD---AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF------------ 223 (347)
T ss_dssp TTTTEEEEEEECT---TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE------------
T ss_pred CCCCEEEEEEECC---CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce------------
Confidence 7789999999751 22221 11122 2235778999999996665 4568899999987411000
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEE-EEeCCCeEEEEEccC---CceEEEeccCC
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIY-TGSSDNSVYIYDLVS---GAQVAKLDFHN 355 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~v~i~d~~~---~~~~~~~~~~~ 355 (409)
..+..+...............++|+|||++|+ +...++.|.+|++.. .+.+..+..+.
T Consensus 224 ------------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 285 (347)
T 3hfq_A 224 ------------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG 285 (347)
T ss_dssp ------------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS
T ss_pred ------------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC
Confidence 00111111110000002244668999999874 555689999999973 25566666667
Q ss_pred cceeeeEEecCcCeEEeecC-CCeEEEEecC
Q 015301 356 APVRDCCWHPIYPMLISSSW-DCNIVRWEIP 385 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 385 (409)
..+..++|+||+++|++++. ++.|.+|+++
T Consensus 286 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 286 DFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 77899999999998887765 4899999664
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=1.3e-25 Score=190.43 Aligned_cols=275 Identities=11% Similarity=0.076 Sum_probs=193.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeee
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
++|++++.++.|.+||..+++...... .......+..++|+|+++.++ ++..++.|.+||+.+++..........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---
Confidence 478999999999999999886554432 211000367899999998765 455678999999988765332221110
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEE------------ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAG------------SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHL 199 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (409)
..+...+..++|+|+|++++++. .++.|.+||+.+++.+..+.. ...+.+++|+ +++++
T Consensus 78 -------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~ 148 (337)
T 1pby_B 78 -------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGSK 148 (337)
T ss_dssp -------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSSC
T ss_pred -------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCCCE
Confidence 00122467899999999998886 469999999999988877764 4567889999 78887
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC------------------------cE
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ------------------------TT 255 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------~i 255 (409)
|+++ ++.|.+||+. .++....+..+.. ...+.|+|+++.++..+.++ .|
T Consensus 149 l~~~--~~~i~~~d~~----~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 149 LYGL--GRDLHVMDPE----AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp EEEE--SSSEEEEETT----TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred EEEe--CCeEEEEECC----CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 7777 6889999975 4555544443321 11237899988776655433 34
Q ss_pred EEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC
Q 015301 256 KLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN 335 (409)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 335 (409)
.+||+.+.+.. ...+..+. .....++++|++++++++ ++
T Consensus 222 ~~~d~~~~~~~---------------------------------~~~~~~~~------~~~~~~~~s~dg~~l~~~--~~ 260 (337)
T 1pby_B 222 LTMDLETGEMA---------------------------------MREVRIMD------VFYFSTAVNPAKTRAFGA--YN 260 (337)
T ss_dssp EEEETTTCCEE---------------------------------EEEEEECS------SCEEEEEECTTSSEEEEE--ES
T ss_pred EEEeCCCCCce---------------------------------EeecCCCC------CceeeEEECCCCCEEEEe--CC
Confidence 66666552210 00111111 123356899999999988 79
Q ss_pred eEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 336 SVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 336 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+++.
T Consensus 261 ~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred eEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 999999999998888764 35678999999999888888999999999987653
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=6.4e-25 Score=186.66 Aligned_cols=278 Identities=12% Similarity=0.129 Sum_probs=180.9
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcC--CCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQE-SNIKVYNVD--KNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNIV 112 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d-~~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~w 112 (409)
..|...+.+++|+|+|++|++++.+ +.|.+|+++ ++.. ........+. .+..++|+|++++|++++. ++.|.+|
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 4577889999999999999888876 899999997 4422 2111122122 6889999999998877664 8899999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCC-Ceeee----EEcC-CCC
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQA-NKCSL----RIPA-HKS 185 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~-~~~~~----~~~~-~~~ 185 (409)
|+..+.......... ....+.+++|+|+++++++++ .++.|.+||+.+ ++... .+.. ...
T Consensus 112 d~~~~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVE-------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EEETTEEEEEEEEEC-------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred ECCCCcccccccccc-------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 995322111111100 011478899999999888887 789999999987 65432 2222 345
Q ss_pred CeEEEEEeCCCCcEEEE-eeCCCeEEEecccccccCCceeeeee---cc---ccceeEEEEcCCCCeEEEE-eCCCcEEE
Q 015301 186 DVNTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRANGVLM---GH---LEGITFIDSRRDGRYFISN-GKDQTTKL 257 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~---~~---~~~v~~~~~~~~~~~l~~~-~~dg~i~i 257 (409)
.+..++|+ ++++++++ +..++.|.+||+.............. .. ...+..++|+|++++|+++ ..++.|.+
T Consensus 179 ~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 179 GPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 78899999 77876654 45889999999752111111122221 11 2356689999999887754 47899999
Q ss_pred eeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCe
Q 015301 258 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNS 336 (409)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~ 336 (409)
||+...... ...+..+..+. ....++|+|++++|++++ .++.
T Consensus 258 ~d~~~~~~~------------------------------~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 258 FSVSEDGSV------------------------------LSKEGFQPTET-------QPRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSCC------------------------------EEEEEEEECSS-------SCCCEEECTTSSEEEEECTTTCE
T ss_pred EEEcCCCCc------------------------------eEEeeeecCCC-------ccceEEECCCCCEEEEecCCCCe
Confidence 998731100 01111222111 123557899999888887 5799
Q ss_pred EEEEEcc--CCc--eEEEeccCCcceeeeEEecCcC
Q 015301 337 VYIYDLV--SGA--QVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 337 v~i~d~~--~~~--~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
|.+|++. +++ .+..+.. .....+++|.++.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 9999554 553 3444443 24566778877543
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.95 E-value=4.5e-26 Score=207.45 Aligned_cols=277 Identities=11% Similarity=0.000 Sum_probs=191.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVG 115 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~ 115 (409)
..+|++++|+|||++||+++. ||+++||+++++.. .... ..+...+..++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt--~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLN--REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECC--SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eeee--cccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 467999999999999999887 99999999976633 3322 222247999999999 77777664 4555666554
Q ss_pred C--CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE-EEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 116 S--SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL-VAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 116 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
. ...... .... ..+...+|+|+++.+ ++.+.++.+.+||+.+++.......+. .+++|
T Consensus 97 ~~~~g~~~~--l~~~--------------~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 97 TSRPGEEQR--LEAV--------------KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp TTSTTCCEE--CTTS--------------CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred ccCCCcccc--ccCC--------------CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 3 211111 1000 023356788887643 333344556699999987665544333 78999
Q ss_pred eCCCCcEEEEeeCC----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC--cEEEeeCCCCccc
Q 015301 193 ADETGHLIFSGSDD----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ--TTKLWDIRKMSSN 266 (409)
Q Consensus 193 ~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 266 (409)
+ |++++|++++.+ +.|++||+. .+. ...+..|...+..++|+|||+.|+++..++ .|++||+.+....
T Consensus 158 s-pDG~~la~~~~~~~~~~~i~~~d~~----~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 158 D-IRGDLIAGLGFFGGGRVSLFTSNLS----SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp E-EETTEEEEEEEEETTEEEEEEEETT----TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred C-CCCCEEEEEEEcCCCCeEEEEEcCC----CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9 899999988877 789999964 333 345677888899999999999999888888 8999999873321
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceee-e-eEEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRT-L-IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.+.++..... . ......+.|+|||.++++++.++.+++|++
T Consensus 232 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-- 274 (582)
T 3o4h_A 232 -----------------------------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-- 274 (582)
T ss_dssp -----------------------------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred -----------------------------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence 1112110000 0 000123349999999999999999999999
Q ss_pred CceEEEeccCCcceeeeEEecCcCeEEeecCCC---eEEEEecCC
Q 015301 345 GAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC---NIVRWEIPG 386 (409)
Q Consensus 345 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~ 386 (409)
++... .+.+.|.+++|+ +++++++++.+. .+++|+...
T Consensus 275 g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 275 GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 66544 345678999999 999888887774 477777654
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.5e-25 Score=207.87 Aligned_cols=327 Identities=9% Similarity=-0.023 Sum_probs=206.2
Q ss_pred ceeeEEecCceeEeeccc--eEEEEeeecCCCceeecCCC---CeEEEEECCCCCEEEEEeC---------CCcEEEEEc
Q 015301 4 GREVNYSGRGRFSAADSC--HVLSRYLPVNGPWKVDGMNS---RVYTSQFSNDGSFFVAASQ---------ESNIKVYNV 69 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~--~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~~~~l~t~~~---------d~~i~vw~~ 69 (409)
...++|||||++++.... ..++..........+.+|.. .|.+++|||||++||+++. ++.|++||+
T Consensus 18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 356899999998776432 23333322222223334433 4999999999999998876 689999999
Q ss_pred CCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcc-------
Q 015301 70 DKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDE------- 142 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 142 (409)
++++.+.. .... ..+..++|||||+.|+++. ++.|++|++.+++........ .....+. ++.
T Consensus 98 ~~g~~~~~-~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~--~~~~v~~----g~~~~v~~ee 166 (719)
T 1z68_A 98 SNGEFVRG-NELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG--RENKIFN----GIPDWVYEEE 166 (719)
T ss_dssp TTTEECCS-SCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC--BTTTEEE----SSCCHHHHHH
T ss_pred CCCccccc-eecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC--CcCCeEc----ccccceeeee
Confidence 98854210 1111 2578899999999999886 789999999887653322110 0000000 010
Q ss_pred --eeeEEEEEcCCCCeEEEEEecC----------------------------------eEEEEECCCCeee--------e
Q 015301 143 --FGIFSVKFSTDGQELVAAGSDN----------------------------------FIYVYDLQANKCS--------L 178 (409)
Q Consensus 143 --~~v~~~~~~~~~~~l~~~~~d~----------------------------------~i~v~d~~~~~~~--------~ 178 (409)
....+++|+|||++|++++.|. .|++||+.+++.. .
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 1125899999999999988663 7899999987753 1
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEeeCC----CeEEEec----ccccccCCceeeee----ecccccee-----EEEEcC
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGSDD----SLCKVWD----RRCFISKGRANGVL----MGHLEGIT-----FIDSRR 241 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~ 241 (409)
.+..|...+..++|+ |++.++++.... ..|.+|| +. .+.....+ ..|...+. .+.|+|
T Consensus 247 ~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 321 (719)
T 1z68_A 247 MIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFREDWQ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSY 321 (719)
T ss_dssp HHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECSSSS----SEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred cCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccCCCC----CCceEEEEecccccCCceEccccCCccEECC
Confidence 133578889999999 678777774432 2478888 54 33333333 35666666 789999
Q ss_pred CCCeEEE--EeCCC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 242 DGRYFIS--NGKDQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 242 ~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
||+.++. ...+| .|.+||+.... ...+..+.. . +.
T Consensus 322 dg~~l~~~~~~~~g~~~l~~~~~~~~~-----------------------------------~~~lt~~~~--~----v~ 360 (719)
T 1z68_A 322 DAISYYKIFSDKDGYKHIHYIKDTVEN-----------------------------------AIQITSGKW--E----AI 360 (719)
T ss_dssp TSSCEEEEEECTTSCEEEEEESSCSTT-----------------------------------CEECSCSSS--C----EE
T ss_pred CCCeEEEEEEccCCceEEEEEECCCCc-----------------------------------eEecccCce--E----EE
Confidence 9996654 44555 56666765421 111221111 0 11
Q ss_pred eeeecCCCCEEEEEeCC-----CeEEEEEccC--Cc-eEEEec----cCCcceeeeEEecCcCeEEe-ecCC--CeEEEE
Q 015301 318 SPEYSTAQKYIYTGSSD-----NSVYIYDLVS--GA-QVAKLD----FHNAPVRDCCWHPIYPMLIS-SSWD--CNIVRW 382 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~d-----g~v~i~d~~~--~~-~~~~~~----~~~~~v~~~~~s~~~~~l~s-~~~d--g~i~iw 382 (409)
.+.++ +++.|+..+.+ +..++|.+.. +. ....+. +|...+..+.|+|++++++. ++.+ ..+.+|
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~ 439 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH 439 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEE
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEE
Confidence 22334 56666655554 7888888764 32 133343 25667888999999997664 3333 578899
Q ss_pred ecCCCc
Q 015301 383 EIPGIG 388 (409)
Q Consensus 383 ~~~~~~ 388 (409)
|+.+++
T Consensus 440 d~~~g~ 445 (719)
T 1z68_A 440 DGRTDQ 445 (719)
T ss_dssp CSSSCC
T ss_pred ECCCCC
Confidence 886654
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.7e-23 Score=176.89 Aligned_cols=255 Identities=9% Similarity=0.059 Sum_probs=168.1
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC---EEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA---IVN 110 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~ 110 (409)
.+..+...+ +++|+|+|+++++++. ++.|.+||..++......... +..+..+++|+|++++|+++..++ .|.
T Consensus 35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~ 111 (331)
T 3u4y_A 35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE--GQSSMADVDITPDDQFAVTVTGLNHPFNMQ 111 (331)
T ss_dssp EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE--CSSCCCCEEECTTSSEEEECCCSSSSCEEE
T ss_pred eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc--CCCCccceEECCCCCEEEEecCCCCcccEE
Confidence 445556667 9999999997766655 889999999988552222222 222444499999999999555553 999
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCe-EEEEECCCCeee----eEEcCCC
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNF-IYVYDLQANKCS----LRIPAHK 184 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~-i~v~d~~~~~~~----~~~~~~~ 184 (409)
+||+.+++....... ...+.+++|+|+|+++++++. ++. |.+|++.....+ .......
T Consensus 112 v~d~~~~~~~~~~~~----------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 112 SYSFLKNKFISTIPI----------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG 175 (331)
T ss_dssp EEETTTTEEEEEEEC----------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred EEECCCCCeEEEEEC----------------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence 999988765332211 113689999999987766655 477 999998754332 1122345
Q ss_pred CCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCce---eeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEee
Q 015301 185 SDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRA---NGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWD 259 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 259 (409)
..+..++|+ ++++++ +++..++.|.+||+. .++. ...+.. ...+..++|+|+|++++++. .++.|.+||
T Consensus 176 ~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~----~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 176 TRPFNITFT-PDGNFAFVANLIGNSIGILETQ----NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp SSEEEEEEC-TTSSEEEEEETTTTEEEEEECS----STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred CCccceEEC-CCCCEEEEEeCCCCeEEEEECC----CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence 568999999 788755 455578999999975 4444 444543 46678899999999776654 578899999
Q ss_pred CCCCcccccccccccccccccccccccccceeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC-CCeE
Q 015301 260 IRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-DNSV 337 (409)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v 337 (409)
+.+..... +..+..... ..........++|+|++++|++++. ++.|
T Consensus 250 ~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 297 (331)
T 3u4y_A 250 QLSGTLSF--------------------------------VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL 297 (331)
T ss_dssp TTTTEEEE--------------------------------EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEE
T ss_pred CCCCceee--------------------------------ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcE
Confidence 98743211 011100000 0000000123579999998876655 5799
Q ss_pred EEEEccCCc
Q 015301 338 YIYDLVSGA 346 (409)
Q Consensus 338 ~i~d~~~~~ 346 (409)
.+||+.+..
T Consensus 298 ~v~d~~~~~ 306 (331)
T 3u4y_A 298 KVFTISGKV 306 (331)
T ss_dssp EEEETTSCE
T ss_pred EEEEecCCc
Confidence 999997654
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=6.7e-24 Score=180.80 Aligned_cols=283 Identities=14% Similarity=0.115 Sum_probs=182.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCcccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
.++++++++++++++.++.|++||..+++......... ...+..++|+|++++++ +...++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 45788899999999999999999999886554432211 11367899999998665 4457899999999887653322
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------------CeEEEEECCCCee---eeEEcCCCCCeE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------------NFIYVYDLQANKC---SLRIPAHKSDVN 188 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~v~d~~~~~~---~~~~~~~~~~v~ 188 (409)
...... ......+..++|+|+|+++++++.+ +.|.+||+.+++. +..+. +...+.
T Consensus 82 ~~~~~~---------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~ 151 (349)
T 1jmx_B 82 NLSSVP---------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY 151 (349)
T ss_dssp ESCCST---------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred Eccccc---------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence 211000 0001237789999999999999876 8999999988543 33343 344688
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc------------------------ceeEEEEcCCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE------------------------GITFIDSRRDGR 244 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~ 244 (409)
+++|+ ++++ +++++. .|.+||+. .++....+..+.. ....+++++++.
T Consensus 152 ~~~~s-~dg~-l~~~~~--~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 152 LMRAA-DDGS-LYVAGP--DIYKMDVK----TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CEEEC-TTSC-EEEESS--SEEEECTT----TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ceeEC-CCCc-EEEccC--cEEEEeCC----CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 99999 7888 555543 49999965 4444443332210 223455554432
Q ss_pred eEEEEeCCC-cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 245 YFISNGKDQ-TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 245 ~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
......... .+..+|..+.. +..+.... .......++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~----~~~~~~~~~~sp 264 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGK-----------------------------------THTQEFAD----LTELYFTGLRSP 264 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCC-----------------------------------EEEEEEEE----CSSCEEEEEECS
T ss_pred CCccccccceeEEEEeccCCc-----------------------------------EEeccccc----CCCcceeeEecC
Confidence 110000000 11123333211 11111000 001234567899
Q ss_pred -CCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 324 -AQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 324 -~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.+.
T Consensus 265 ~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 265 KDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp SCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred CCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 99999988 88999999999998888763 34578999999999888888899999999987653
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=5e-24 Score=177.18 Aligned_cols=206 Identities=14% Similarity=0.170 Sum_probs=152.6
Q ss_pred CceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeeeeeecccccceEEEEEeCCCCcEEEEEe--cCCEE
Q 015301 33 PWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK-NWKIQKDIETKALRWTITDTSLSPDQRFLVYAS--ICAIV 109 (409)
Q Consensus 33 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i 109 (409)
...+..|...|.+++|+|+|++|++++ ++.|++||+.+ +..... .. ..+...+.+++|+|++++|++++ .++..
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~-~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV-DT-GFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC-CC-TTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe-cc-ccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 346678999999999999999999987 78999999988 643322 21 12234688999999999999998 33444
Q ss_pred EEE--EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEecCeEEEEECCC-CeeeeEEcCCCC
Q 015301 110 NIV--DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDNFIYVYDLQA-NKCSLRIPAHKS 185 (409)
Q Consensus 110 ~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~-~~~~~~~~~~~~ 185 (409)
.+| +..++....... ...+..++|+|++++|+ ++..++.+.+|++.. ......+..+..
T Consensus 111 ~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 111 AIYLLPSTGGTPRLMTK-----------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp EEEEEETTCCCCEECCS-----------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred eEEEEECCCCceEEeec-----------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 555 444443211110 11378899999999887 677889889998532 233455667888
Q ss_pred CeEEEEEeCCCCcEEEEee-CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----------C
Q 015301 186 DVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----------Q 253 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g 253 (409)
.+.+++|+ ++++.|+.++ .++.+++|+++ ........+..|...+..+.|+|++++|++++.+ +
T Consensus 174 ~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 174 RNDGPDYS-PDGRWIYFNSSRTGQMQIWRVR---VDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CEEEEEEC-TTSSEEEEEECTTSSCEEEEEE---TTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred ccccceEC-CCCCEEEEEecCCCCccEEEEC---CCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 99999999 7888777655 58999999975 2344556667777889999999999999888766 5
Q ss_pred cEEEeeCCC
Q 015301 254 TTKLWDIRK 262 (409)
Q Consensus 254 ~i~iwd~~~ 262 (409)
.|.+||+.+
T Consensus 250 ~l~~~d~~~ 258 (297)
T 2ojh_A 250 RVQLMDMDG 258 (297)
T ss_dssp EEEEEETTS
T ss_pred EEEEEecCC
Confidence 699999876
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.93 E-value=7.6e-24 Score=183.18 Aligned_cols=292 Identities=13% Similarity=0.098 Sum_probs=190.4
Q ss_pred CceeecCCCCeEE-----EEECCCCCEEEEEeC-CC--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 33 PWKVDGMNSRVYT-----SQFSNDGSFFVAASQ-ES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 33 ~~~l~~h~~~v~~-----~~~s~~~~~l~t~~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
...+..|...... .+|||||++|+.++. ++ .|.+||+.+++.... . ..+...+..+.|+||++.|++++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-t--~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-T--EGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-C--CSSCBCSSSCEECTTSSEEEEEE
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-e--eCCCCCccceEEcCCCCEEEEEe
Confidence 3466667666665 899999999998887 66 388889888744332 2 22222344578999999999999
Q ss_pred cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeE--EEEEcCCCCeEEEEE---------------------
Q 015301 105 ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIF--SVKFSTDGQELVAAG--------------------- 161 (409)
Q Consensus 105 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~--------------------- 161 (409)
.++.|++||+.+++.......... .+. ...++|++++++...
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~---------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAE---------------WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTT---------------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CCCeEEEEECCCCcceeeeechhh---------------cccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 999999999998865433222111 122 234588998877432
Q ss_pred -ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC-CCcEEEEeeCC------CeEEEecccccccCCceeeeeeccc--
Q 015301 162 -SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE-TGHLIFSGSDD------SLCKVWDRRCFISKGRANGVLMGHL-- 231 (409)
Q Consensus 162 -~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-- 231 (409)
.+..|.+||+.+++... +..+...+..++|+ | +++.|+....+ ..|.++|+. +.....+..+.
T Consensus 165 ~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTV-ILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINED-----GTNMRKVKTHAEG 237 (388)
T ss_dssp CCCEEEEEEETTTCCEEE-EEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETT-----SCCCEESCCCCTT
T ss_pred CCcceEEEEECCCCceEE-eecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCC-----CCceEEeeeCCCC
Confidence 23679999999887544 44466788999999 7 88888776653 367777753 22233333343
Q ss_pred cceeEEEEcCCCCeEEEEeC-CC----cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecc
Q 015301 232 EGITFIDSRRDGRYFISNGK-DQ----TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGH 306 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (409)
..+..+.|+|||+.|+..+. ++ .|.+||+.+.+.. .+..+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--------------------------------~l~~~~~~ 285 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR--------------------------------QLTSMPAC 285 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE--------------------------------EEEEECCE
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE--------------------------------EEEcCCCc
Confidence 35778899999998866543 22 3999999873311 11111110
Q ss_pred cceeeeeEEEEeeeecCCCCEEEEE---------eCCCeEEEEEccCCceEEEeccCCc-----------ceeeeEEecC
Q 015301 307 SVLRTLIRCYFSPEYSTAQKYIYTG---------SSDNSVYIYDLVSGAQVAKLDFHNA-----------PVRDCCWHPI 366 (409)
Q Consensus 307 ~~~~~~~~~~~~~~~s~~~~~l~~~---------~~dg~v~i~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~ 366 (409)
. ..........|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+..++|+||
T Consensus 286 ~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spD 361 (388)
T 3pe7_A 286 S---HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPD 361 (388)
T ss_dssp E---EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred e---eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCC
Confidence 0 000001112588899988754 4567899999988765 44555555 5788999999
Q ss_pred cCeEEeec-CCCeEEEEecC
Q 015301 367 YPMLISSS-WDCNIVRWEIP 385 (409)
Q Consensus 367 ~~~l~s~~-~dg~i~iw~~~ 385 (409)
|+.|+.++ .+|...+|.++
T Consensus 362 g~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 362 DKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp SSEEEEEECTTSSCEEEEEE
T ss_pred CCEEEEEecCCCceeEEEEE
Confidence 99776554 56777777654
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.93 E-value=4.7e-23 Score=176.29 Aligned_cols=278 Identities=13% Similarity=0.087 Sum_probs=178.0
Q ss_pred CCCEEEEEe----CCCcEEEEEcCC--CeeeeeeeecccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCC--c
Q 015301 51 DGSFFVAAS----QESNIKVYNVDK--NWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSS--A 118 (409)
Q Consensus 51 ~~~~l~t~~----~d~~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~--~ 118 (409)
...++++|+ .++.|.+|+++. +. +...... +...+..++|+|++++|++++.+ +.|.+|++... +
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~-~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGE-SLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCC-EEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCC-EEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 344566664 456899998753 42 2222222 44467889999999999998875 79999998763 3
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEE------cC--------C
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRI------PA--------H 183 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~------~~--------~ 183 (409)
......... +...+..+++ ++++|++++ .++.|.+|++.....+..+ .+ +
T Consensus 89 ~~~~~~~~~-------------~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~ 153 (361)
T 3scy_A 89 LHLLNTQKT-------------MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQT 153 (361)
T ss_dssp EEEEEEEEC-------------SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCS
T ss_pred EEEeeEecc-------------CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccC
Confidence 222111110 1113566777 788777776 4789999999754332211 11 1
Q ss_pred CCCeEEEEEeCCCCcEEEEee-CCCeEEEecccccccCC----c-e------eeeeeccccceeEEEEcCCCCeEEEEe-
Q 015301 184 KSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKG----R-A------NGVLMGHLEGITFIDSRRDGRYFISNG- 250 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~----~-~------~~~~~~~~~~v~~~~~~~~~~~l~~~~- 250 (409)
...+.+++|+ |+++++++++ .++.|.+|++... .. + . ......+...+..++|+|+|+++++++
T Consensus 154 ~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 154 MPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPN--ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT--CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCC--CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 2345789999 7888665544 5889999987521 21 1 1 111223445678999999999887777
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.++.|.+||+.+.... .+..+...... ......++|+|||++|++
T Consensus 231 ~~~~v~v~~~~~g~~~--------------------------------~~~~~~~~~~~---~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 231 IGGTVIAFRYADGMLD--------------------------------EIQTVAADTVN---AQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp TTCEEEEEEEETTEEE--------------------------------EEEEEESCSSC---CCCEEEEEECTTSSEEEE
T ss_pred CCCeEEEEEecCCceE--------------------------------EeEEEecCCCC---CCCcccEEECCCCCEEEE
Confidence 5899999998752110 01111111000 011245679999999877
Q ss_pred EeCC--CeEEEEEcc--CCc--eEEEeccCCcceeeeEEecCcCeEEeec-CCCeEEEEecC
Q 015301 331 GSSD--NSVYIYDLV--SGA--QVAKLDFHNAPVRDCCWHPIYPMLISSS-WDCNIVRWEIP 385 (409)
Q Consensus 331 ~~~d--g~v~i~d~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 385 (409)
+..+ +.|.+|++. +++ .+..+.. ...+.+++|+||+++|++++ .++.|.+|+++
T Consensus 276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 6654 899999995 444 4455554 55788999999999888776 67999997665
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=203.66 Aligned_cols=285 Identities=12% Similarity=0.090 Sum_probs=187.4
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceEEEEEeCCCCcEEEEEec---------CCEEEEEEc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSPDQRFLVYASI---------CAIVNIVDV 114 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~~w~~ 114 (409)
+++|+|||++++++ .|++|++||+.+++.... ...... ...+.+++|||||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTI-LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEE-ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEE-EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 78999999765554 699999999998854332 222110 013889999999999999876 789999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCCe------
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSDV------ 187 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v------ 187 (409)
.+++......+. ..+..++|+|||+.|+.+. ++.|++||+.+++..... .++...|
T Consensus 98 ~~g~~~~~~~l~----------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 98 SNGEFVRGNELP----------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp TTTEECCSSCCC----------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred CCCccccceecC----------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 988752111111 1478899999999999885 789999999888765432 2332222
Q ss_pred -----------EEEEEeCCCCcEEEEeeCCC----------------------------------eEEEecccccccCCc
Q 015301 188 -----------NTVCFADETGHLIFSGSDDS----------------------------------LCKVWDRRCFISKGR 222 (409)
Q Consensus 188 -----------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~ 222 (409)
.+++|+ |+++.|++++.|. .|++||+. .+.
T Consensus 161 ~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~----~~~ 235 (719)
T 1z68_A 161 WVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT----YPA 235 (719)
T ss_dssp HHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----CHH
T ss_pred ceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----CCC
Confidence 489999 8999999887652 78899975 222
Q ss_pred ee--------eeeeccccceeEEEEcCCCCeEEEEeCC----CcEEEee----CCCCccccccccccccccccccccccc
Q 015301 223 AN--------GVLMGHLEGITFIDSRRDGRYFISNGKD----QTTKLWD----IRKMSSNTTDNSRLRDYDWDYRWMEYP 286 (409)
Q Consensus 223 ~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (409)
.. ..+.+|...+..++|+||++++++.... ..|.+|| +.+........
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~---------------- 299 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE---------------- 299 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE----------------
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe----------------
Confidence 21 1234577789999999998776664432 2488888 65532211100
Q ss_pred ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE--EeCCC--eEEEEEccCCceEEEeccCCcceeeeE
Q 015301 287 SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT--GSSDN--SVYIYDLVSGAQVAKLDFHNAPVRDCC 362 (409)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~ 362 (409)
....++...... .....+.|+|||+.|+. ...+| .|++||+.+++ ...+..+...+..+.
T Consensus 300 --------------~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 300 --------------HIEESRTGWAGG-FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIF 363 (719)
T ss_dssp --------------EEEECSSSCSSS-SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEE
T ss_pred --------------cccccCCceEcc-ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEE
Confidence 000111110000 00014579999996654 44444 67788887766 456666666788887
Q ss_pred EecCcCeEEeecC-----CCeEEEEecCC
Q 015301 363 WHPIYPMLISSSW-----DCNIVRWEIPG 386 (409)
Q Consensus 363 ~s~~~~~l~s~~~-----dg~i~iw~~~~ 386 (409)
++ +++.|+..+. ++..++|.++.
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 77 7776655544 48889998764
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=5e-23 Score=179.16 Aligned_cols=196 Identities=13% Similarity=0.046 Sum_probs=142.1
Q ss_pred ceeeEEecCceeEeeccceEEEEeeec-----------------CCCceeecCCCCeEEEEECCCCCEEE----EEeCCC
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPV-----------------NGPWKVDGMNSRVYTSQFSNDGSFFV----AASQES 62 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~~s~~~~~l~----t~~~d~ 62 (409)
...+++|+++.++++++...+..+... ........|.+.|++++|+|+|++|| +++.|+
T Consensus 39 ~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred ccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 457899999887776554332221100 01112234677899999999999999 788999
Q ss_pred cEEEEEcCCC--------eeeeeeeecccccceEEEEEeCCC-CcEEEEEecCCEEEEEEcCCCccccccceeceeeeee
Q 015301 63 NIKVYNVDKN--------WKIQKDIETKALRWTITDTSLSPD-QRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLD 133 (409)
Q Consensus 63 ~i~vw~~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 133 (409)
+|+|||+.+. ..+.......+|...|.+++|+|+ +.+|++++.||.|++||+.++......
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~---------- 188 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT---------- 188 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE----------
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec----------
Confidence 9999998654 222233445668889999999998 889999999999999999876321110
Q ss_pred eecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-------CCCeEEEEEeCCCCcEEEE-eeC
Q 015301 134 FSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-------KSDVNTVCFADETGHLIFS-GSD 205 (409)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~-~~~ 205 (409)
.+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..| ...|.+++|+ ++..++++ ...
T Consensus 189 -----~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~-~~~~~l~~~~~~ 261 (434)
T 2oit_A 189 -----LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI-GTYVFAIVYAAA 261 (434)
T ss_dssp -----ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE-ETTEEEEEEEET
T ss_pred -----cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe-cCceEEEEEccC
Confidence 0244579999999999999999999999999998 5555555433 2379999999 66666644 334
Q ss_pred CC------eEEEecccc
Q 015301 206 DS------LCKVWDRRC 216 (409)
Q Consensus 206 dg------~i~iwd~~~ 216 (409)
+| .+++|+++.
T Consensus 262 dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 262 DGTLETSPDVVMALLPK 278 (434)
T ss_dssp TCCSSSCCEEEEEECCC
T ss_pred CCccCCCCceEEEEecc
Confidence 43 389999873
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=3.9e-23 Score=175.86 Aligned_cols=266 Identities=14% Similarity=0.162 Sum_probs=169.3
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQ---ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w 112 (409)
..+...+..++|+|||+ |++++. ++.|++|+++++.. ........+...+..++|+|++++|++++ .++.+.+|
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 45667788999999999 555543 68999999977632 22222233444688899999999998887 78999999
Q ss_pred EcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC-CCeeee--EEcC-CCCCe
Q 015301 113 DVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKCSL--RIPA-HKSDV 187 (409)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~--~~~~-~~~~v 187 (409)
++.. +............. .+........+.+++|+|+|+.+++...++.|.+|++. +++... .+.. ....+
T Consensus 114 ~~~~~g~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGH----GPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp EECTTSCEEEEEEEECCCC----CSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred EeCCCCCeeecceeecCCC----CCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 9963 22221111110000 00001122358899999999955555558899999998 554332 2222 23467
Q ss_pred EEEEEeCCCCcEEEE-eeCCCeEEEecccccccCCce--eeeeeccc------cceeEEEEcCCCCeEE-EEeCCCcEEE
Q 015301 188 NTVCFADETGHLIFS-GSDDSLCKVWDRRCFISKGRA--NGVLMGHL------EGITFIDSRRDGRYFI-SNGKDQTTKL 257 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~------~~v~~~~~~~~~~~l~-~~~~dg~i~i 257 (409)
..++|+ |+++++++ ...++.+.+|++.. ..+.. ...+.... ..+..++|+|+|++|+ +...++.|.+
T Consensus 190 ~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 190 RHLVFS-PDGQYAFLAGELSSQIASLKYDT--QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEEET--TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred ceEEEC-CCCCEEEEEeCCCCEEEEEEecC--CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 889999 78885555 56789999999752 12221 22222222 3478899999999874 4556899999
Q ss_pred eeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCC-Ce
Q 015301 258 WDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSD-NS 336 (409)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~ 336 (409)
|++..... ...+..+..+. .....++|+|||++|++++.+ +.
T Consensus 267 ~~~~~~g~-------------------------------~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 267 FAVTADGH-------------------------------LTLIQQISTEG------DFPRDFDLDPTEAFVVVVNQNTDN 309 (347)
T ss_dssp EEECGGGC-------------------------------EEEEEEEECSS------SCCCEEEECTTSSEEEEEETTTTE
T ss_pred EEECCCCc-------------------------------EEEeEEEecCC------CCcCeEEECCCCCEEEEEEcCCCc
Confidence 99864110 01122222211 112355799999988888764 89
Q ss_pred EEEE--EccCCceE
Q 015301 337 VYIY--DLVSGAQV 348 (409)
Q Consensus 337 v~i~--d~~~~~~~ 348 (409)
|.+| |..+++..
T Consensus 310 v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 310 ATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECTTTCCEE
T ss_pred EEEEEEeCCCCeEE
Confidence 9999 54566554
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=5.7e-23 Score=175.32 Aligned_cols=244 Identities=11% Similarity=0.077 Sum_probs=181.4
Q ss_pred eEEEEEeCCCCcEEEEEec-------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 87 TITDTSLSPDQRFLVYASI-------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~-------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
.+..++|+|+++++++++. ++.|.+||..+++........ ..+..++|+|+++++++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----------------~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----------------LKPFGATINNTTQTLWF 105 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----------------SCCCSEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----------------CCcceEEECCCCCEEEE
Confidence 5889999999999888773 568999999887654332211 13677899999996665
Q ss_pred EEe-cCeEEEEECCCCeeeeEEcCCCCC---------eEEEEEeCCCCcEEEEee--CCCeEEEecccccccCCceeeee
Q 015301 160 AGS-DNFIYVYDLQANKCSLRIPAHKSD---------VNTVCFADETGHLIFSGS--DDSLCKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 160 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~ 227 (409)
++. ++.|.+||..+++.+..+..+... +.+++|+ ++++.+++++ .++.|.+||+. .++....+
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~~ 180 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG----NIKLKTAI 180 (353)
T ss_dssp EETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT----TTEEEEEE
T ss_pred EecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC----CCceEEEe
Confidence 544 799999999999988877654432 7889999 7777776665 47899999964 56666666
Q ss_pred eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccc
Q 015301 228 MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS 307 (409)
Q Consensus 228 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (409)
..+...+..++|+|+++++++++.++.|.+||+.+... +..+....
T Consensus 181 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~----------------------------------~~~~~~~~ 226 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI----------------------------------LSRKKLLD 226 (353)
T ss_dssp CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE----------------------------------EEEEECCC
T ss_pred cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE----------------------------------EEEEEcCC
Confidence 54556688999999999999999999999999887322 22222110
Q ss_pred ceeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEE-eecCCCeEEEEecC
Q 015301 308 VLRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI-SSSWDCNIVRWEIP 385 (409)
Q Consensus 308 ~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~ 385 (409)
. ........++++|+++++++++. ++.|.+||..+++.+..+.... ...++|+|++++++ +...++.|.+||+.
T Consensus 227 ~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 227 D--GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp S--SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C--CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 0 00112345678999997777665 4999999999999888887543 26799999999555 45578999999998
Q ss_pred CCcc
Q 015301 386 GIGE 389 (409)
Q Consensus 386 ~~~~ 389 (409)
+++.
T Consensus 303 ~~~~ 306 (353)
T 3vgz_A 303 SYKV 306 (353)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7654
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=3.4e-23 Score=180.24 Aligned_cols=214 Identities=14% Similarity=0.112 Sum_probs=154.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----------eeee--eeecccccceEEEEEeCCCCcEEE----E
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNW----------KIQK--DIETKALRWTITDTSLSPDQRFLV----Y 102 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----------~~~~--~~~~~~~~~~v~~~~~s~~~~~l~----~ 102 (409)
....++.+++++++.++++++.|+ +++|+..... .... ......+...|.+++|+|++++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999888 9998753210 0000 001112345799999999999999 7
Q ss_pred EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEc
Q 015301 103 ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIP 181 (409)
Q Consensus 103 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 181 (409)
++.|+.|++||+.+......... ..+.......+|...|.+++|+|+ +.+|++++.||.|++||++++..+....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQK----RPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSC----CCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred cCCCceEEEEEccccccCCcCCc----ceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 88899999999976411000000 000011122356778999999997 8899999999999999999987776677
Q ss_pred CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-------cccceeEEEEcCCCCeEEEEe-CCC
Q 015301 182 AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-------HLEGITFIDSRRDGRYFISNG-KDQ 253 (409)
Q Consensus 182 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~-~dg 253 (409)
+|...|.+++|+ +++++|++|+.||.|++||++ +.....+.. |...+.+++|++++.++++.+ .||
T Consensus 190 ~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 190 PSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp CGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 789999999999 789999999999999999975 222222222 334899999999887765433 343
Q ss_pred ------cEEEeeCCCC
Q 015301 254 ------TTKLWDIRKM 263 (409)
Q Consensus 254 ------~i~iwd~~~~ 263 (409)
.+++|++++.
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 3899999864
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=1.5e-21 Score=167.01 Aligned_cols=281 Identities=13% Similarity=0.109 Sum_probs=178.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEE
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQE----SNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d----~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w 112 (409)
+...+..++|+|||++|++++.+ +.|.+|+++.. ..+........+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67788899999999999998875 79999998763 233333222223335777888 788777776 67899999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCe-------e------ee
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANK-------C------SL 178 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~-------~------~~ 178 (409)
++................+... .....+...+.+++|+|+|+++++++. ++.|.+|++.... . ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGP-DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCS-CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCC-CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9975432211111000000000 000112234788999999997776654 7899999887543 1 11
Q ss_pred EEcCCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecccccccCCce--eeee---eccccceeEEEEcCCCCeEEEEeCC
Q 015301 179 RIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRA--NGVL---MGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
....+...+..++|+ |+++++++++ .++.|.+||+. .+.. ...+ ..+......++|+|+|++|+++..+
T Consensus 205 ~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 205 FKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYA----DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEE----TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred eecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEec----CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 123345668899999 8888777766 68999999975 2222 2222 2233456799999999988776654
Q ss_pred --CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 253 --QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 253 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
+.|.+|++...... ...+..+.. . .....++|+|+|++|++
T Consensus 280 ~~~~i~v~~~~~~~g~------------------------------~~~~~~~~~-g------~~~~~~~~spdg~~l~~ 322 (361)
T 3scy_A 280 KADGVAIFKVDETNGT------------------------------LTKVGYQLT-G------IHPRNFIITPNGKYLLV 322 (361)
T ss_dssp SSCEEEEEEECTTTCC------------------------------EEEEEEEEC-S------SCCCEEEECTTSCEEEE
T ss_pred CCCEEEEEEEcCCCCc------------------------------EEEeeEecC-C------CCCceEEECCCCCEEEE
Confidence 89999998631100 001111111 0 11234579999998888
Q ss_pred Ee-CCCeEEEEEc--cCCceEEEe-ccCCcceeeeEEe
Q 015301 331 GS-SDNSVYIYDL--VSGAQVAKL-DFHNAPVRDCCWH 364 (409)
Q Consensus 331 ~~-~dg~v~i~d~--~~~~~~~~~-~~~~~~v~~~~~s 364 (409)
++ .++.|.+|++ .+++..... ..+...+.++.|.
T Consensus 323 ~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 323 ACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 87 5789999654 466655443 2344578888885
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=9.5e-23 Score=172.77 Aligned_cols=248 Identities=12% Similarity=0.074 Sum_probs=175.7
Q ss_pred CeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecc--cccceEEEEEeCCCCcEEEEEe------------cC
Q 015301 42 RVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYAS------------IC 106 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~------------~d 106 (409)
.+.+++|+|+|++++ ++..++.|.+||+.+++......... .+...+..++|+|++++|+++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 588999999998764 55567899999999886554332211 0222467899999999998886 57
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD 186 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 186 (409)
+.|.+||+.+++....... ...+..++|+|++++|+++ ++.|.+||+.+++....+..+...
T Consensus 115 ~~i~v~d~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~ 176 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA----------------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC----------------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT
T ss_pred ceEEEEECCCCcEEEEEeC----------------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC
Confidence 9999999987654322211 1136778999999988888 688999999999988777644311
Q ss_pred eEEEEEeCCCCcEEEEeeC-CC-----------------------eEEEecccccccCCce-eeeeeccccceeEEEEcC
Q 015301 187 VNTVCFADETGHLIFSGSD-DS-----------------------LCKVWDRRCFISKGRA-NGVLMGHLEGITFIDSRR 241 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~-dg-----------------------~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~ 241 (409)
..+.|+ +++..++..+. ++ .|.+||+. .++. ...+..+...+.+++|+|
T Consensus 177 -~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s~ 250 (337)
T 1pby_B 177 -AETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFSTAVNP 250 (337)
T ss_dssp -TTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEEEECT
T ss_pred -CCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC----CCCceEeecCCCCCceeeEEECC
Confidence 123677 66665554432 22 46888875 3332 233445556788999999
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee
Q 015301 242 DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY 321 (409)
Q Consensus 242 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (409)
++++++++ ++.|.+||+.+.+ .+..+.... ....++|
T Consensus 251 dg~~l~~~--~~~v~~~d~~~~~----------------------------------~~~~~~~~~-------~~~~~~~ 287 (337)
T 1pby_B 251 AKTRAFGA--YNVLESFDLEKNA----------------------------------SIKRVPLPH-------SYYSVNV 287 (337)
T ss_dssp TSSEEEEE--ESEEEEEETTTTE----------------------------------EEEEEECSS-------CCCEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCc----------------------------------CcceecCCC-------ceeeEEE
Confidence 99998888 7899999987632 222222211 1235578
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCc
Q 015301 322 STAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNA 356 (409)
Q Consensus 322 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 356 (409)
+|+|++|++++.++.|++||+.+++.+..+..+..
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 99999999999999999999999999888875543
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.92 E-value=3.8e-22 Score=170.63 Aligned_cols=288 Identities=10% Similarity=0.031 Sum_probs=179.6
Q ss_pred EEEEEeCC--CcEEEEEcC--CCeeeeeeeec-ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC-CCccccccceec
Q 015301 54 FFVAASQE--SNIKVYNVD--KNWKIQKDIET-KALRWTITDTSLSPDQRFLVYASICAIVNIVDVG-SSARESLANVTE 127 (409)
Q Consensus 54 ~l~t~~~d--~~i~vw~~~--~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~-~~~~~~~~~~~~ 127 (409)
++++|+.. +.|.+|+++ ++. +...... ......+..++|+|++++|++++.+ .|.+|++. +++........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~-l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~- 80 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLT-CKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP- 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTE-EEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-
T ss_pred EEEEEEccCCCcEEEEEEECCCCC-EEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-
Confidence 35555543 468887763 442 2221111 1122257789999999999988887 99999996 55432111100
Q ss_pred eeeeeeeecCCCCcceeeEEEEEcCCCCe--EEEEE-------------ecCeEEEEECC-CCeeeeEEc----CCCCCe
Q 015301 128 IHKGLDFSADGDEDEFGIFSVKFSTDGQE--LVAAG-------------SDNFIYVYDLQ-ANKCSLRIP----AHKSDV 187 (409)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~-------------~d~~i~v~d~~-~~~~~~~~~----~~~~~v 187 (409)
. .+ .+..++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+
T Consensus 81 --------~--~g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~ 147 (365)
T 1jof_A 81 --------I--GG---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI 147 (365)
T ss_dssp --------C--CS---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred --------c--CC---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence 0 00 1345889999995 44542 58899999997 465544333 255779
Q ss_pred EEEEEeCCCCcEEEEee-CCCeEEEecccccccCCce--eeeee--ccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCC
Q 015301 188 NTVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRA--NGVLM--GHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIR 261 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 261 (409)
.+++|+ |++++|++++ .++.|++||+.. .++. ...+. .|...+..++|+|+|+++++++. ++.|.+|++.
T Consensus 148 ~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 148 HGMVFD-PTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEC-CCCCEEEEEcCCCCEEEEEEECC---CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 999999 8888887765 468999999741 2322 22222 23566899999999999888775 6899999875
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeee----cccceeeeeEEEEeee-ecCCCCEEEEEeCC-C
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK----GHSVLRTLIRCYFSPE-YSTAQKYIYTGSSD-N 335 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~s~~~~~l~~~~~d-g 335 (409)
......... ...+..+. ++............++ ++|||++|++++.+ +
T Consensus 224 ~~~g~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 224 PATHMPVYT--------------------------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp TTTCCEEEE--------------------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred CCCCcEEEc--------------------------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 311000000 00000000 1000000000234668 99999998877643 2
Q ss_pred -----eEEEEEcc-CCceEE---EeccCCcceeeeEEec---CcCeEEeecCC-CeEEEEecCCC
Q 015301 336 -----SVYIYDLV-SGAQVA---KLDFHNAPVRDCCWHP---IYPMLISSSWD-CNIVRWEIPGI 387 (409)
Q Consensus 336 -----~v~i~d~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~s~~~d-g~i~iw~~~~~ 387 (409)
.|.+|++. +++... ....+...+..++|+| |+++|++++.+ +.|.+|++...
T Consensus 278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 566543 2334555678899999 89999988764 89999998764
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=7.2e-23 Score=186.39 Aligned_cols=232 Identities=10% Similarity=0.067 Sum_probs=166.0
Q ss_pred cceEEEEEeCCCCcEEEEEec-CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 85 RWTITDTSLSPDQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
..+|.+++|+|||+.||+++. ||.++||++.+++...... .+...+..++|+|+ +.+++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~---------------~~~~~~~~~~~spd-~~l~~~~~~ 84 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR---------------EPINSVLDPHYGVG-RVILVRDVS 84 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS---------------SCCSEECEECTTCS-EEEEEEECS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec---------------ccccccccccCCCC-eEEEEeccC
Confidence 447999999999999999887 9999999986655432221 11135889999999 77776664
Q ss_pred --cCeEEEEECCC---CeeeeEEcCCCCCeEEEEEeCCCCc-EEEEeeCCCeEEEecccccccCCceeeeeeccccceeE
Q 015301 163 --DNFIYVYDLQA---NKCSLRIPAHKSDVNTVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITF 236 (409)
Q Consensus 163 --d~~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 236 (409)
+....+|.+.. +... .+... ..+...+|+ ++++ .+++.+.++.+.+||+. .+...... .+.. .+
T Consensus 85 ~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s-~dg~~~~~~s~~~~~~~l~d~~----~g~~~~l~-~~~~--~~ 154 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGV-DTGEAVVFTGATEDRVALYALD----GGGLRELA-RLPG--FG 154 (582)
T ss_dssp TTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEE-ECSSCEEEEEECSSCEEEEEEE----TTEEEEEE-EESS--CE
T ss_pred CCCcceEEEEEeccCCCccc-cccCC-CCceeeeeC-CCCCeEEEEecCCCCceEEEcc----CCcEEEee-cCCC--ce
Confidence 34445554432 2222 33322 234566888 4553 44444445556699974 44433333 3333 88
Q ss_pred EEEcCCCCeEEEEeCC----CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 237 IDSRRDGRYFISNGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
++|+|||++|++++.+ +.|++||+.+.. ...+..+.
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----------------------------------~~~l~~~~----- 194 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----------------------------------LRVFDSGE----- 194 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTCC-----------------------------------CEEECCSS-----
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----------------------------------ceEeecCC-----
Confidence 9999999999988877 789999987632 22333333
Q ss_pred eEEEEeeeecCCCCEEEEEeCCC--eEEEEEccCCceEEEeccCCcceeeeE--------EecCcCeEEeecCCCeEEEE
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDN--SVYIYDLVSGAQVAKLDFHNAPVRDCC--------WHPIYPMLISSSWDCNIVRW 382 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~dg~i~iw 382 (409)
.....++|||||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.||.+++|
T Consensus 195 -~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~ 272 (582)
T 3o4h_A 195 -GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF 272 (582)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred -CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEE
Confidence 2336789999999999888888 8999999999887 7788888888888 99999989999999999999
Q ss_pred ec
Q 015301 383 EI 384 (409)
Q Consensus 383 ~~ 384 (409)
++
T Consensus 273 ~~ 274 (582)
T 3o4h_A 273 ID 274 (582)
T ss_dssp ET
T ss_pred EE
Confidence 99
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.91 E-value=6.9e-21 Score=177.85 Aligned_cols=332 Identities=11% Similarity=0.051 Sum_probs=198.3
Q ss_pred ceeeEEecCceeEeeccce-EEEEeeecCCCceeecCCCC-----eEEEEECCCCCEEEEEeCC---------CcEEEEE
Q 015301 4 GREVNYSGRGRFSAADSCH-VLSRYLPVNGPWKVDGMNSR-----VYTSQFSNDGSFFVAASQE---------SNIKVYN 68 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~-----v~~~~~s~~~~~l~t~~~d---------~~i~vw~ 68 (409)
...++|+|||++++..... .++..........+.+|... ...++|||||++|+.++.+ +.+.+||
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 3578999999998876433 23333223333455666543 2447899999999998875 5677999
Q ss_pred cCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCC-----Ccce
Q 015301 69 VDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGD-----EDEF 143 (409)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 143 (409)
+.+++.. . ...+...+...+|||||+.||.+. ++.|++|++.+++......... ....+..... +.-.
T Consensus 99 ~~~~~~~-~---l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~--~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 99 LNKRQLI-T---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGK--EDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp TTTTEEC-C---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCB--TTTEEESBCCHHHHHHTSS
T ss_pred CCCCcEE-E---cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCC--ccceecCcccccccchhcC
Confidence 9998432 2 333445799999999999999885 7899999998876433221110 0000000000 0001
Q ss_pred eeEEEEEcCCCCeEEEEEecC------------------------------------eEEEEECCC---Ce--eeeEEc-
Q 015301 144 GIFSVKFSTDGQELVAAGSDN------------------------------------FIYVYDLQA---NK--CSLRIP- 181 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~------------------------------------~i~v~d~~~---~~--~~~~~~- 181 (409)
....+.|||||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 234589999999999876432 588899988 73 223343
Q ss_pred -----CCCCCeEEEEEeCCCCcEEEEeeC----CCeEEEecccccccCCc----e--eeee--ecccccee-----EEEE
Q 015301 182 -----AHKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGR----A--NGVL--MGHLEGIT-----FIDS 239 (409)
Q Consensus 182 -----~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~----~--~~~~--~~~~~~v~-----~~~~ 239 (409)
+|...+..++|+ |++++++.... +..|.+||+. .+. + ...+ ..|...+. ...|
T Consensus 252 ~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d~~----tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYD----ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp CHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEE----TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred CccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEECC----CCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 377789999999 78886665533 3479999975 333 1 1222 34554444 7889
Q ss_pred cCCCCeEE-EEeC-CC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEE
Q 015301 240 RRDGRYFI-SNGK-DQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRC 315 (409)
Q Consensus 240 ~~~~~~l~-~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (409)
+|||+.|+ ..+. +| .|.+||+..... .....+.-.. ..
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~----------------------------------~~lT~g~~~v----~~ 368 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKDC----------------------------------TFITKGTWEV----IG 368 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSSC----------------------------------EESCCSSSCE----EE
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCce----------------------------------EecccCCEEE----EE
Confidence 99999876 5553 44 577788765221 1111111100 11
Q ss_pred EEeeeecCCCCEEEEEeC----CC--eEEEEEccCCceEEEecc----CCcceeeeEEecCcCeEEeecC---CCeEEEE
Q 015301 316 YFSPEYSTAQKYIYTGSS----DN--SVYIYDLVSGAQVAKLDF----HNAPVRDCCWHPIYPMLISSSW---DCNIVRW 382 (409)
Q Consensus 316 ~~~~~~s~~~~~l~~~~~----dg--~v~i~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~---dg~i~iw 382 (409)
.. .++ ++.++++++. .+ .|+..++..++....+.. ....+..+.|+|++++++.... -..+.++
T Consensus 369 ~~--~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~ 445 (740)
T 4a5s_A 369 IE--ALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (740)
T ss_dssp EE--EEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred EE--EEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEE
Confidence 11 122 2334444443 23 455555544444334432 2357889999999996654332 2467788
Q ss_pred ecCCCc
Q 015301 383 EIPGIG 388 (409)
Q Consensus 383 ~~~~~~ 388 (409)
+...++
T Consensus 446 ~~~~~~ 451 (740)
T 4a5s_A 446 SSVNDK 451 (740)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 876543
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=5.5e-21 Score=162.76 Aligned_cols=277 Identities=10% Similarity=0.058 Sum_probs=178.4
Q ss_pred eeeEEecCceeEeeccce-EEEEeeecCC--CceeecCC-CCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeee
Q 015301 5 REVNYSGRGRFSAADSCH-VLSRYLPVNG--PWKVDGMN-SRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 5 ~~~~~s~dg~~~~~~~~~-~~~~~~~~~~--~~~l~~h~-~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
..++++++++++++.... .+..+-.... ...+..+. ..+..++|+|+|++++ +...++.|.+||+.+++......
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888876664432 2222221111 12333332 2688999999998665 55568999999999886554332
Q ss_pred eccc---ccceEEEEEeCCCCcEEEEEecC------------CEEEEEEcCCCccccccceeceeeeeeeecCCCCccee
Q 015301 80 ETKA---LRWTITDTSLSPDQRFLVYASIC------------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFG 144 (409)
Q Consensus 80 ~~~~---~~~~v~~~~~s~~~~~l~~~~~d------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (409)
.... ....+..++|+|++++|++++.+ +.|.+||+.+++......... +...
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~~ 149 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-------------MPRQ 149 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-------------CCSS
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-------------CCCc
Confidence 1110 02236789999999999998865 899999998765332221111 1114
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC------------------------CeEEEEEeCCCCc--
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS------------------------DVNTVCFADETGH-- 198 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~-- 198 (409)
+.+++|+|+|+ +++++ +.|.+||+.+++.+..+..+.. ....++++ +++.
T Consensus 150 ~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~ 225 (349)
T 1jmx_B 150 VYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQD 225 (349)
T ss_dssp CCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred ccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCC
Confidence 78899999999 66553 4599999999988777654320 22345554 2221
Q ss_pred ---------EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEeCCCcEEEeeCCCCccccc
Q 015301 199 ---------LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 199 ---------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
++.....++.+++|++ ..+...+..++++| ++++++++ ++.|.+||+.+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~---- 286 (349)
T 1jmx_B 226 PATADLLYGYLSVDLKTGKTHTQEF-------------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK---- 286 (349)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEE-------------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE----
T ss_pred ccccccceeEEEEeccCCcEEeccc-------------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe----
Confidence 1112233445555553 22455678999999 99998888 8899999998732
Q ss_pred ccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE
Q 015301 269 DNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV 348 (409)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 348 (409)
.+..+.... ....++++|++++|++++.++.|++||+.+++.+
T Consensus 287 ------------------------------~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 287 ------------------------------LIKAANLDH-------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp ------------------------------EEEEEECSS-------CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred ------------------------------EEEEEcCCC-------CccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 222222111 1235578999999998888999999999999988
Q ss_pred EEeccC
Q 015301 349 AKLDFH 354 (409)
Q Consensus 349 ~~~~~~ 354 (409)
..++.+
T Consensus 330 ~~~~~~ 335 (349)
T 1jmx_B 330 KNIKLP 335 (349)
T ss_dssp EEEECS
T ss_pred eeeecC
Confidence 888654
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=9.4e-22 Score=183.68 Aligned_cols=289 Identities=12% Similarity=0.084 Sum_probs=187.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc---ccceEEEEEeCCCCcEEEEEecC---------C
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA---LRWTITDTSLSPDQRFLVYASIC---------A 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d---------g 107 (409)
.....+++|+|||++++++ |++|++||+.++..... +.... .......+.|||||++|++++.+ +
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 3456789999999998886 89999999998865432 22211 11123458899999999998875 5
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE-cCCCCC
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI-PAHKSD 186 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~ 186 (409)
.+.+||+.+++...+.. +...+...+|||||+.|+.+ .++.|++|++.+++..+.. .++...
T Consensus 93 ~~~~~d~~~~~~~~l~~----------------~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLITEER----------------IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp EEEEEETTTTEECCSSC----------------CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred EEEEEECCCCcEEEccc----------------CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccc
Confidence 67799999987543322 12258899999999999888 5789999999888754422 233222
Q ss_pred e-----------------EEEEEeCCCCcEEEEeeCCC-eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 187 V-----------------NTVCFADETGHLIFSGSDDS-LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 187 v-----------------~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
+ ..+.|+ |+++.|+.++.|. .+.+|++....... .+...+..+.+.+.|..
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~~G~~--- 224 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGAV--- 224 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTSC---
T ss_pred eecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCCCcCc---
Confidence 2 358999 8999888877554 48888864211110 34455677778777653
Q ss_pred EeCCCcEEEeeCCC---CcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 249 NGKDQTTKLWDIRK---MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 249 ~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
.....|.+||+.+ ..... ...+............+..++|||||
T Consensus 225 -~~~~~l~v~d~~~~~~~~~~~--------------------------------~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 225 -NPTVKFFVVNTDSLSSVTNAT--------------------------------SIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp -CCEEEEEEEETTSCCSSSCCC--------------------------------EEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred -CCeeEEEEEECCCCCCCCcce--------------------------------EEEecCCccCCCCCeEEEEEEEeCCC
Confidence 2233689999876 42100 01111000000011345677899999
Q ss_pred CEEEEEeC----CCeEEEEEccCCc----eE--EEe--ccCCccee-----eeEEecCcCeEE-eec-CC--CeEEEEec
Q 015301 326 KYIYTGSS----DNSVYIYDLVSGA----QV--AKL--DFHNAPVR-----DCCWHPIYPMLI-SSS-WD--CNIVRWEI 384 (409)
Q Consensus 326 ~~l~~~~~----dg~v~i~d~~~~~----~~--~~~--~~~~~~v~-----~~~~s~~~~~l~-s~~-~d--g~i~iw~~ 384 (409)
++++.... +..|++||+.+++ +. ..+ ..|...|. .+.|+|||+.|+ ..+ .+ ..|++|++
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 97766543 3479999999887 22 222 34665554 789999999766 554 33 46888888
Q ss_pred CCCcccCC
Q 015301 385 PGIGEAPL 392 (409)
Q Consensus 385 ~~~~~~~~ 392 (409)
..+....+
T Consensus 352 ~~~~~~~l 359 (740)
T 4a5s_A 352 DKKDCTFI 359 (740)
T ss_dssp TCSSCEES
T ss_pred CCCceEec
Confidence 76654433
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.89 E-value=2.5e-20 Score=172.51 Aligned_cols=322 Identities=14% Similarity=0.058 Sum_probs=198.5
Q ss_pred ceeeEEecCceeEeec--c---ceEEEEeeecCCCceeecCCCCeE---------EEEEC--CCCCE-EEEEeC-CCcEE
Q 015301 4 GREVNYSGRGRFSAAD--S---CHVLSRYLPVNGPWKVDGMNSRVY---------TSQFS--NDGSF-FVAASQ-ESNIK 65 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~--~---~~~~~~~~~~~~~~~l~~h~~~v~---------~~~~s--~~~~~-l~t~~~-d~~i~ 65 (409)
.+.+++|+++.+.+.. . ...++..........+..|...+. ...|+ |||+. |+.++. +..|.
T Consensus 26 ~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~ 105 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLY 105 (662)
T ss_dssp CEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEE
T ss_pred cceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEE
Confidence 4678899988766654 1 233444444445567778877776 66665 99998 776654 55677
Q ss_pred EEEcC--C-Ceeeeeeeecc--cccceEEEEEeCCCCcEEEEEecC----------CEEEEEEcCC------Cccccccc
Q 015301 66 VYNVD--K-NWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASIC----------AIVNIVDVGS------SARESLAN 124 (409)
Q Consensus 66 vw~~~--~-~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~~w~~~~------~~~~~~~~ 124 (409)
+|++. + + ....+.... .+...+..++|+|||+.|++++.+ ..|++||+.+ ++......
T Consensus 106 ~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 184 (662)
T 3azo_A 106 AFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD 184 (662)
T ss_dssp EECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC
T ss_pred EEcCCCCCCC-CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe
Confidence 77765 2 3 322222211 145578999999999999998876 5899999987 44322210
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--------CeEEEEECC-CC---eeeeEEcCCCCCeEEEEE
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------NFIYVYDLQ-AN---KCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~-~~---~~~~~~~~~~~~v~~~~~ 192 (409)
. +...+..++|+|||++|+.++.+ ..|++||+. ++ +.......|...+..++|
T Consensus 185 --~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 185 --D-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp --S-------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred --c-------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 0 11247788999999999988765 379999998 56 444444556788999999
Q ss_pred eCCCCcEEEEeeCCC--eEEEecccccccCCceeeeeeccccc--------eeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 193 ADETGHLIFSGSDDS--LCKVWDRRCFISKGRANGVLMGHLEG--------ITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+ ++++++++++.++ .|.+||+. .+........+... +..++|+|++++++++.. +.+++|.+..
T Consensus 250 s-pdg~l~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~ 323 (662)
T 3azo_A 250 A-PDGSLIVATDRTGWWNLHRVDPA----TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP 323 (662)
T ss_dssp C-TTSCEEEEECTTSSCEEEEECTT----TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred C-CCCeEEEEECCCCCeEEEEEECC----CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence 9 7888888888888 56666642 33333222222221 467889999999999988 9999994432
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCC--eEEEE
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDN--SVYIY 340 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~v~i~ 340 (409)
. ...+..+..+... . ..++ +++++.-++++++.+. .|+++
T Consensus 324 ~---------------------------------~~~~~~l~~~~~~--~-~~~~--s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 324 E---------------------------------SGELVDAAGPWTE--W-AATL--TVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp T---------------------------------TTEEEECCSSCCE--E-EEEE--EEETTEEEEEEEETTEEEEEEEE
T ss_pred C---------------------------------CCcEEEecCCCCe--E-EEEE--ecCCCEEEEEEcCCCCCCEEEEE
Confidence 1 0112333333211 1 1111 2333333344445553 56666
Q ss_pred EccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 341 DLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 341 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
|+.+++.......+...+....+.+.....+.+..+..|..|-+.
T Consensus 366 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 366 DTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp ETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred ECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence 776777654445555455555555555555555444467666553
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.89 E-value=8.2e-22 Score=170.93 Aligned_cols=294 Identities=12% Similarity=0.026 Sum_probs=181.5
Q ss_pred CeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 42 RVYTSQFSNDGSFFVAASQE---SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
.+.+++|||||++|+....+ ..|.+|++.+++.. ..... .......+.|+||++.|+.++.++.|++||+.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEG--KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCS--SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-EeecC--CCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 37889999999998877543 46888899887432 22211 11112237899999999999999999999998876
Q ss_pred cccccceecee--ee--eeeecCCCCcceeeEEEEEcCCCCeEEEE-----EecCeEEEEECCCCeeeeEEcCCCCCeEE
Q 015301 119 RESLANVTEIH--KG--LDFSADGDEDEFGIFSVKFSTDGQELVAA-----GSDNFIYVYDLQANKCSLRIPAHKSDVNT 189 (409)
Q Consensus 119 ~~~~~~~~~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~v~~ 189 (409)
........... .+ +.+.............+.|+|+++.++.. ..+..|++||+.+++..... .+...+..
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~ 192 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGH 192 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEE
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccccc
Confidence 54332211100 00 00000000000000013578888877654 34678999999988765544 46778899
Q ss_pred EEEeCCCCcEEEEeeCC------CeEEEecccccccCCceeeeeecc--ccceeEEEEcCCCCeEEEEeCC-----CcEE
Q 015301 190 VCFADETGHLIFSGSDD------SLCKVWDRRCFISKGRANGVLMGH--LEGITFIDSRRDGRYFISNGKD-----QTTK 256 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~ 256 (409)
+.|+|.++..|+..+.+ ..|.+||+. ... ...+..+ ...+..+.|+|+|++|+..+.+ +.|.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~----~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNED----GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEETTEEEEEEEEECSCSSSCSCCCEEEETT----SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ceECCCCCCEEEEEecCCCCCCCceEEEEECC----CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 99993267766665543 357788753 222 2222222 2357889999999988777654 4499
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEEe---
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTGS--- 332 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~--- 332 (409)
+||+.+... ..+..... . .+.|+| +|++++.++
T Consensus 268 ~~d~~~g~~-----------------------------------~~l~~~~~---~-----~~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 268 KANPETLEN-----------------------------------EEVMVMPP---C-----SHLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp EECTTTCCE-----------------------------------EEEEECCS---E-----EEEEECSSSSEEEEEECCC
T ss_pred EEECCCCCe-----------------------------------EEeeeCCC---C-----CCCccCCCCceEEEecCCc
Confidence 999876321 11111110 0 157888 999888765
Q ss_pred -------------CCCeEEEEEccCCceEEEeccCCc-----------ceeeeEEecCcCeEEeecC-CCeEEEE--ecC
Q 015301 333 -------------SDNSVYIYDLVSGAQVAKLDFHNA-----------PVRDCCWHPIYPMLISSSW-DCNIVRW--EIP 385 (409)
Q Consensus 333 -------------~dg~v~i~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-dg~i~iw--~~~ 385 (409)
.++.|++||+.+++. ..+..+.. .+..++|+||++.|+.++. ++...+| ++.
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~ 383 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP 383 (396)
T ss_dssp ----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence 347899999988765 34444444 2677899999997776654 4554555 444
Q ss_pred CCc
Q 015301 386 GIG 388 (409)
Q Consensus 386 ~~~ 388 (409)
.+.
T Consensus 384 ~~~ 386 (396)
T 3c5m_A 384 ESY 386 (396)
T ss_dssp TTC
T ss_pred ccc
Confidence 443
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=2.7e-20 Score=158.27 Aligned_cols=283 Identities=12% Similarity=0.023 Sum_probs=186.3
Q ss_pred CCCCEEEEEe------CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEEEE
Q 015301 50 NDGSFFVAAS------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVD 113 (409)
Q Consensus 50 ~~~~~l~t~~------~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~w~ 113 (409)
++++++++.. .|+.|.+||..+++.+.... . .. .. .++|+||+++|+++. .++.|.+||
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~-~--g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP-T--AF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE-C--CE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEec-C--CC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 3566666543 36799999998886554322 2 22 23 899999999999886 367899999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeE-EcCCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLR-IPAHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~~v~~~ 190 (409)
..+.+........... ..+......++++|+|++|+++.. ++.|.+||+.+++.+.. +.. .. ...+
T Consensus 88 ~~t~~~~~~i~~~~~~---------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v 156 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKR---------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSV 156 (361)
T ss_dssp TTTCCEEEEEEECTTB---------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEE
T ss_pred CcCCcEEEEEEcCccc---------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-ccee
Confidence 9876553332211100 001123567999999999999875 57899999999988877 553 22 2335
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceee------eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG------VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
.+.|.....+++.+.||.+.+|++. ..++... .+.....++ .+.+++++..++..+.++.+.++|+....
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~---~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLG---EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEEC---TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred EEcCCCCeeEEEECCCCcEEEEEEC---CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 5664555788888999999999864 1233221 111222222 23346777777777888999999986522
Q ss_pred ccccccccccccccccccccccccceeccccCccceeeeeccc----ceeeeeEEEEeeeecCCCCEEEEEeC-------
Q 015301 265 SNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS------- 333 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~------- 333 (409)
... +..+.... ...........++++|+++.++++..
T Consensus 233 ~~~--------------------------------~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 233 VKV--------------------------------DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp CEE--------------------------------EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred cee--------------------------------cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 110 00000000 00000000012367888888777643
Q ss_pred ----CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 334 ----DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 334 ----dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.+.|.+||+.+++.+.++..+. +.+++|+||+++|++++. +.|.+||..++
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999999999999998777 999999999999998886 99999999887
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=5.3e-20 Score=156.45 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=178.6
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeeccc---ccceEEEEEeCCCCcEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKA---LRWTITDTSLSPDQRFLV 101 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~ 101 (409)
.+..+..+ .++|+|||++|+++. .+++|.+||..+.+.+........ +...+..++++|||++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 44444444 899999999999886 257799999988766554432211 112456789999999999
Q ss_pred EEec--CCEEEEEEcCCCccccc-cceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCC-Cee
Q 015301 102 YASI--CAIVNIVDVGSSARESL-ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQA-NKC 176 (409)
Q Consensus 102 ~~~~--dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~-~~~ 176 (409)
++.. ++.|.+||+.+++.... .... ....+.+.|++ ..+++.+.||.+.+|++.. ++.
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~-----------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAAA-----------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGGT-----------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecCC-----------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 8874 57999999998765322 1111 12235567765 5677778899999998865 444
Q ss_pred eeE------EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--c----c----ccceeEEEEc
Q 015301 177 SLR------IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--G----H----LEGITFIDSR 240 (409)
Q Consensus 177 ~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~----~----~~~v~~~~~~ 240 (409)
... +..+..++ .+.+. +++..++..+.++.+.++|+.. ........+. . + ......++++
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSG--DEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSS--SSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred eeeccccceEcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecC--CCceecccccccCccccccccccCCeeEEEEe
Confidence 311 12222222 23334 4566667777889999999741 1111111110 0 0 1122237899
Q ss_pred CCCCeEEEEeC-----------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 241 RDGRYFISNGK-----------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 241 ~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
|+++.++++.. .+.|.+||+.+ .+.+..+..+.
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t----------------------------------~~~v~~i~~~~-- 306 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT----------------------------------KQRVARIPGRD-- 306 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT----------------------------------TEEEEEEECTT--
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCC----------------------------------CcEEEEEecCC--
Confidence 99888777643 34799999987 33444444432
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC--ceEEEeccCCcceeeeEEecCcC
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG--AQVAKLDFHNAPVRDCCWHPIYP 368 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 368 (409)
.+.++++|||++|++++. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 307 ------p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ------ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ------CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ------eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 345689999999998887 99999999999 99999876777888999999986
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.88 E-value=3.5e-20 Score=171.55 Aligned_cols=300 Identities=10% Similarity=0.030 Sum_probs=191.3
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEE--eCCCcEEEEEcCCCeeeeeeeecccccceEE---------EEEeC--CCCcE-
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAA--SQESNIKVYNVDKNWKIQKDIETKALRWTIT---------DTSLS--PDQRF- 99 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~--~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~- 99 (409)
..+.+|...|..++|++++-+++.. +.++...||....+.....+. .+...+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL---PAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS---CTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC---CCCccccccccccCCccceeeeecCCCeE
Confidence 3577899999999999887666766 557889999964443333322 2222334 45555 99998
Q ss_pred EEEEec-CCEEEEEEcC--C-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----------Ce
Q 015301 100 LVYASI-CAIVNIVDVG--S-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----------NF 165 (409)
Q Consensus 100 l~~~~~-dg~i~~w~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~ 165 (409)
|+.++. +..|.++++. + ++........ ...+...+..++|+|||+.|++++.+ ..
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~-----------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS-----------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 776654 5567777765 2 3322111100 00133468899999999999998877 58
Q ss_pred EEEEECCC------CeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCC--------CeEEEecccccccCC---ceeeee
Q 015301 166 IYVYDLQA------NKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKG---RANGVL 227 (409)
Q Consensus 166 i~v~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~---~~~~~~ 227 (409)
|++||+.+ ++. ..+. .+...+..++|+ |+++.|+.++.+ ..|++||+. ..+ ......
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~---~~g~~~~~~~l~ 237 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVT---EDGRFADTRTLL 237 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEEC---TTSCEEEEEEEE
T ss_pred EEEEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEEC---CCCcccccEEeC
Confidence 99999987 554 4454 566778889999 899999887755 379999964 123 333334
Q ss_pred eccccceeEEEEcCCCCeEEEEeCCC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeec
Q 015301 228 MGHLEGITFIDSRRDGRYFISNGKDQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG 305 (409)
Q Consensus 228 ~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
..|...+..+.|+|||++++++..++ .|.+||+.+...... ...
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l----------------------------------~~~ 283 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL----------------------------------CRR 283 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES----------------------------------SCC
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec----------------------------------ccc
Confidence 44568899999999999878887788 566666544221110 000
Q ss_pred ccceeee--eEEEEeeeecCCCCEEEEEeCCCeEEEE--EccCCceEEEeccCCcceeee-EEecCcCeEEeecCCC--e
Q 015301 306 HSVLRTL--IRCYFSPEYSTAQKYIYTGSSDNSVYIY--DLVSGAQVAKLDFHNAPVRDC-CWHPIYPMLISSSWDC--N 378 (409)
Q Consensus 306 ~~~~~~~--~~~~~~~~~s~~~~~l~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg--~ 378 (409)
+...... .......+++|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++++.-++++++.+. .
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYE 361 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCE
Confidence 0000000 000113467889999999998 999999 544444 67788787778777 5544333455556554 4
Q ss_pred EEEEecCCCc
Q 015301 379 IVRWEIPGIG 388 (409)
Q Consensus 379 i~iw~~~~~~ 388 (409)
|++||+.+++
T Consensus 362 i~~~d~~~g~ 371 (662)
T 3azo_A 362 VVELDTVTGR 371 (662)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 5555655543
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=7.1e-20 Score=156.54 Aligned_cols=251 Identities=10% Similarity=0.065 Sum_probs=164.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeeeeeeeecccccceEEEEEeCCCCcE--EEEEe-----------
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVD-KNWKIQKDIETKALRWTITDTSLSPDQRF--LVYAS----------- 104 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~----------- 104 (409)
....+..++|+|||++|++++.+ .|.+|+++ ++.... ....... +.+..++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34568899999999999999887 89999997 664332 2111111 12445899999995 44553
Q ss_pred --cCCEEEEEEcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECC-CCeee--
Q 015301 105 --ICAIVNIVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQ-ANKCS-- 177 (409)
Q Consensus 105 --~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~-~~~~~-- 177 (409)
.++.+.+|++.. ++........ . ..+...+.+++|+|+|++++++.. ++.|.+||+. +++..
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~--------~---~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNY--------E---YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEE--------E---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred ecCCceEEEEccCCCCcCcceEeeE--------E---eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 689999999974 3322111100 0 012235889999999998887764 6799999998 67643
Q ss_pred eEEc--CCCCCeEEEEEeCCCCcEEEEeeC-CCeEEEecccccccCCcee------eeee----cccc------ceeEEE
Q 015301 178 LRIP--AHKSDVNTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRAN------GVLM----GHLE------GITFID 238 (409)
Q Consensus 178 ~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~----~~~~------~v~~~~ 238 (409)
..+. .|...+..++|+ |+++++++++. ++.|.+|++.. ..+... ..+. +|.. .+..++
T Consensus 184 ~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDP--ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp EEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECT--TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred eeEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeC--CCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence 2333 246679999999 88988877764 78999998641 122221 1121 1222 578999
Q ss_pred -EcCCCCeEEEEeCCC------cEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee---eeecccc
Q 015301 239 -SRRDGRYFISNGKDQ------TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA---TYKGHSV 308 (409)
Q Consensus 239 -~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 308 (409)
|+|||++|+++..+. .|.+|++... +.... ....+.
T Consensus 261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~---------------------------------g~~~~~~~~~~~~~- 306 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDC---------------------------------GSIEKQLFLSPTPT- 306 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTT---------------------------------SCEEEEEEEEECSS-
T ss_pred EECCCCCEEEEECCCCCCCCCCeEEEEEECCC---------------------------------CCEEEeeeeeecCC-
Confidence 999999888766432 8999998631 11000 011110
Q ss_pred eeeeeEEEEeeeecC---CCCEEEEEeCC-CeEEEEEccCC
Q 015301 309 LRTLIRCYFSPEYST---AQKYIYTGSSD-NSVYIYDLVSG 345 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~---~~~~l~~~~~d-g~v~i~d~~~~ 345 (409)
.....++++| ||++|++++.+ +.|.+|++...
T Consensus 307 -----~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 307 -----SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -----CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -----CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 0112346788 79999998875 89999998765
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=2e-20 Score=161.65 Aligned_cols=231 Identities=9% Similarity=0.008 Sum_probs=145.2
Q ss_pred eEEecCceeEeeccc-e---EEEEee-ecCCCce-eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 7 VNYSGRGRFSAADSC-H---VLSRYL-PVNGPWK-VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 7 ~~~s~dg~~~~~~~~-~---~~~~~~-~~~~~~~-l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
.+|||||++++.... . .++.+- ....... ..+|...+..++|+|||+.|+.++.++.|++||+.+++.... ..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~-~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV-YQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE-EE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee-ee
Confidence 789999997665432 1 122221 2222223 335555666788999999999999999999999998854432 22
Q ss_pred cccccceEEEE--EeCCCCcEEEEE----------------------ecCCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 81 TKALRWTITDT--SLSPDQRFLVYA----------------------SICAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 81 ~~~~~~~v~~~--~~s~~~~~l~~~----------------------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
... ..+... .++|+++.++.. ..+..|.+||+.+++.......
T Consensus 120 ~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----------- 186 (388)
T 3pe7_A 120 VPA--EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE----------- 186 (388)
T ss_dssp CCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-----------
T ss_pred chh--hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-----------
Confidence 222 233333 458999988743 2346899999988764332211
Q ss_pred CCCCcceeeEEEEEcC-CCCeEEEEEec------CeEEEEECCCCeeeeEEcCCC--CCeEEEEEeCCCCcEEEEee-CC
Q 015301 137 DGDEDEFGIFSVKFST-DGQELVAAGSD------NFIYVYDLQANKCSLRIPAHK--SDVNTVCFADETGHLIFSGS-DD 206 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~-~d 206 (409)
...+..++|+| +|+.|+....+ ..|.++|...++.. .+..+. ..+..++|+ |+++.|+..+ .+
T Consensus 187 -----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~ 259 (388)
T 3pe7_A 187 -----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWV-PDGSALVYVSYLK 259 (388)
T ss_dssp -----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEEC-TTSSCEEEEEEET
T ss_pred -----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceEC-CCCCEEEEEecCC
Confidence 11478899999 99999887753 37888888765543 343343 257788999 7888665543 22
Q ss_pred C----eEEEecccccccCCc--eeeeeeccccc---eeEEEEcCCCCeEEEE---------eCCCcEEEeeCCC
Q 015301 207 S----LCKVWDRRCFISKGR--ANGVLMGHLEG---ITFIDSRRDGRYFISN---------GKDQTTKLWDIRK 262 (409)
Q Consensus 207 g----~i~iwd~~~~~~~~~--~~~~~~~~~~~---v~~~~~~~~~~~l~~~---------~~dg~i~iwd~~~ 262 (409)
+ .|++||+. .++ .+....++... ...+.|+|||+.|+.. ..+..|.+||+.+
T Consensus 260 ~~~~~~l~~~d~~----~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 260 GSPDRFIYSADPE----TLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp TCCCEEEEEECTT----TCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CCCcceEEEEecC----CCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 2 39999975 333 22222221110 1223689999988754 4466899999876
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.87 E-value=8.2e-19 Score=149.17 Aligned_cols=258 Identities=11% Similarity=0.152 Sum_probs=172.5
Q ss_pred CCeEEEEECCCCCEEEEEe---------CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---C-
Q 015301 41 SRVYTSQFSNDGSFFVAAS---------QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC---A- 107 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g- 107 (409)
..+..+++ ||++++... .++.|.+|+++++.. ..+ ..+..++|+|||+.|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-------ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 45777888 898887642 256799999988743 222 257889999999999988754 3
Q ss_pred -EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------------------------
Q 015301 108 -IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------------------------ 162 (409)
Q Consensus 108 -~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------ 162 (409)
.|.+|++.+++....... .. +..++|+|+|+.|+.++.
T Consensus 85 ~~l~~~~~~~g~~~~l~~~----------------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEA----------------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFF 147 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE----------------SE-EEEEEECTTSSEEEEEEECCCC---------CCCC-------
T ss_pred ceEEEEECCCCceEEEEcC----------------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccc
Confidence 477788877654322111 11 788999999999988864
Q ss_pred ---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC-------eEEEecccccccCCceeeeeecccc
Q 015301 163 ---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS-------LCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 163 ---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
...|++||+.+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.+. .+. ...+..+ .
T Consensus 148 ~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d----~~~-~~~l~~~-~ 217 (347)
T 2gop_A 148 DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE----DGK-EEKMFEK-V 217 (347)
T ss_dssp --CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE----TTE-EEEEEEE-E
T ss_pred cCccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC----CCc-eEEeccC-c
Confidence 25799999998887445544 3 78899999 788 777776542 45666543 222 2333334 4
Q ss_pred ceeEEEEcCCCCeEEEEeCC--------CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeee
Q 015301 233 GITFIDSRRDGRYFISNGKD--------QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK 304 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (409)
.+..+ +|+|++|+..+.+ ..|.+|| +. .......
T Consensus 218 ~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----------------------------------~~~~l~~ 259 (347)
T 2gop_A 218 SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----------------------------------EVMGILD 259 (347)
T ss_dssp SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----------------------------------CEEESST
T ss_pred ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----------------------------------ceEeccc
Confidence 44444 9999998877754 3577777 21 1111111
Q ss_pred cccceeeeeEEEEe-eeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeE-EEE
Q 015301 305 GHSVLRTLIRCYFS-PEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNI-VRW 382 (409)
Q Consensus 305 ~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i-~iw 382 (409)
.+. ..+.. +.|+ ++ ++++++.++.++|| +.+++.... ..+...|.+++|+| .++++++.++.. .+|
T Consensus 260 ~~~------~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 260 EVD------RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp TCC------SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred cCC------cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 111 11122 5678 78 89999999999999 886665444 34577899999999 677777666654 677
Q ss_pred ecC
Q 015301 383 EIP 385 (409)
Q Consensus 383 ~~~ 385 (409)
.++
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 665
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.86 E-value=6.2e-19 Score=148.96 Aligned_cols=284 Identities=10% Similarity=0.012 Sum_probs=186.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|.+++|++++..++..+.++.++.|. +....... .+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEIS---KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEE---SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEe---ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 4578889999988888778888999993 22332222 22335789999999998888888999999999876543
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----CeEEEEECCCCeeeeEEc--CCCCCeEEEEEeC
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYDLQANKCSLRIP--AHKSDVNTVCFAD 194 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~ 194 (409)
..... +...+.+++++++|+++++...+ +.|.+||..+++....+. .+...+.+++++
T Consensus 80 ~~~~~---------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d- 143 (333)
T 2dg1_A 80 RPFVS---------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD- 143 (333)
T ss_dssp EEEEC---------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-
T ss_pred EEeeC---------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC-
Confidence 22110 11258999999999877766555 689999998776543332 245678999999
Q ss_pred CCCcEEEEeeC------CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCcc-c
Q 015301 195 ETGHLIFSGSD------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSS-N 266 (409)
Q Consensus 195 ~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~ 266 (409)
++++++++... .+.|..+|.. .+. ...+..+...+..++|+|+++.|+. ...++.|.+||+..... .
T Consensus 144 ~~g~l~v~~~~~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 144 SKGGFYFTDFRGYSTNPLGGVYYVSPD----FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp TTSCEEEEECCCBTTBCCEEEEEECTT----SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred CCCCEEEEeccccccCCCceEEEEeCC----CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence 78887776653 3556666632 222 2223334456788999999986654 45678999999864110 0
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
.... ......+.++ .....++++++|+++++...++.|.+||. +++
T Consensus 219 ~~~~--------------------------~~~~~~~~~~-------~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~ 264 (333)
T 2dg1_A 219 QPFG--------------------------ATIPYYFTGH-------EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGY 264 (333)
T ss_dssp EEEE--------------------------EEEEEECCSS-------SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSC
T ss_pred cccc--------------------------ceEEEecCCC-------CCCCceEECCCCCEEEEEcCCCEEEEECC-CCC
Confidence 0000 0000001110 12234678889998888878899999998 577
Q ss_pred eEEEeccCCc------ceeeeEEecCcCeEEeecCC------CeEEEEecC
Q 015301 347 QVAKLDFHNA------PVRDCCWHPIYPMLISSSWD------CNIVRWEIP 385 (409)
Q Consensus 347 ~~~~~~~~~~------~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~ 385 (409)
.+..+..+.. .+.+++|+||++.|+.++.+ +.|...++.
T Consensus 265 ~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 265 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 7777654433 68999999998766655444 245555544
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.86 E-value=4.8e-18 Score=140.22 Aligned_cols=244 Identities=14% Similarity=0.147 Sum_probs=171.6
Q ss_pred cceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-cCCCCeEEEEEe-
Q 015301 85 RWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-STDGQELVAAGS- 162 (409)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~- 162 (409)
-..+.+++++++++++++...++.|.+||...... ..... ......+...+..+++ .+++.++++...
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-~~~~~---------~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-FQFGE---------CGKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-EEECC---------BSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-EEecc---------cCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 34689999999999888888899999999863321 11110 0011123345889999 467766655533
Q ss_pred cCeEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEEEE
Q 015301 163 DNFIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDS 239 (409)
Q Consensus 163 d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~ 239 (409)
++.|.+|| .+++.+..+. .+...+.++++. ++++++++...++.|.+||. .+.....+. .+...+..+++
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ-----NGNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECT-----TSCEEEEEECTTTCSSEEEEEE
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcC-----CCCEEEEeCCCCccCCcEEEEE
Confidence 78999999 5677666664 344678999999 78888888788899999995 234444332 34456899999
Q ss_pred cCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEee
Q 015301 240 RRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSP 319 (409)
Q Consensus 240 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (409)
+++++++++...++.|.+||... ..+..+...... .....+
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~g-----------------------------------~~~~~~~~~g~~----~~p~~i 212 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGIT----NYPIGV 212 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTS----CSEEEE
T ss_pred CCCCCEEEEECCCCEEEEEcCCC-----------------------------------CEEEEEccCCcc----CCCcEE
Confidence 99999888777889999999753 112222211100 122356
Q ss_pred eecCCCCEEEEEeCCC-eEEEEEccCCceEEEeccCCc--ceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 320 EYSTAQKYIYTGSSDN-SVYIYDLVSGAQVAKLDFHNA--PVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 320 ~~s~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
+++++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+++++++ +.|+.|++|++..
T Consensus 213 ~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 213 GINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 7889999888888776 9999995 6777777765543 4779999999987777 5799999999865
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.86 E-value=6.6e-19 Score=148.13 Aligned_cols=245 Identities=11% Similarity=0.106 Sum_probs=173.7
Q ss_pred ceEEEEEeCCCCcEEEEEecC------------------------CEEEEEEcCCCccccccceeceeeeeeeecCCCCc
Q 015301 86 WTITDTSLSPDQRFLVYASIC------------------------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDED 141 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~d------------------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (409)
+.+.+++++|+|+++++...+ +.|.+||..+++...... ..+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~ 89 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--------------KNL 89 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--------------TTT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--------------CCc
Confidence 369999999999998887766 479999988776532111 012
Q ss_pred ceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEE---------cCCCCCeEEEEEeCCCCcEEEEee-CCCeEE
Q 015301 142 EFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRI---------PAHKSDVNTVCFADETGHLIFSGS-DDSLCK 210 (409)
Q Consensus 142 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~ 210 (409)
...+..++++|+|+++++...++.|++||..... .+..+ ..+...+..++++|.+++++++.+ .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 2257899999999988777778999999986542 44444 244557899999943888888886 689999
Q ss_pred EecccccccCCceeeeeec----------cccceeEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 211 VWDRRCFISKGRANGVLMG----------HLEGITFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
+||. .+.....+.. +......++++|+ +.++++...++.|++||..+..
T Consensus 170 ~~~~-----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--------------- 229 (329)
T 3fvz_A 170 QFSP-----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--------------- 229 (329)
T ss_dssp EECT-----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------------
T ss_pred EEcC-----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc---------------
Confidence 9994 3444444432 2234789999998 7777777788999999987522
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC------CCCEEEEEeCCCeEEEEEccCCceEEEec-
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST------AQKYIYTGSSDNSVYIYDLVSGAQVAKLD- 352 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~- 352 (409)
.+..+....... ..+.++++| +|+..++...+..|++|+..+++.+..+.
T Consensus 230 -------------------~~~~~~~~~~~~----~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~ 286 (329)
T 3fvz_A 230 -------------------FVREIKHASFGR----NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP 286 (329)
T ss_dssp -------------------EEEEECCTTTTT----CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred -------------------EEEEEeccccCC----CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence 222222111101 112334555 34444444456689999999999998873
Q ss_pred --cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 353 --FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 353 --~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
++...+..++++|+|.++++...++.|++|++...
T Consensus 287 ~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 287 VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 56677899999999988888888999999998653
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=4e-18 Score=140.68 Aligned_cols=247 Identities=12% Similarity=0.121 Sum_probs=171.1
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec---ccccceEEEEEe-CCCCcEEEEEec-CCEEEE
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET---KALRWTITDTSL-SPDQRFLVYASI-CAIVNI 111 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~---~~~~~~v~~~~~-s~~~~~l~~~~~-dg~i~~ 111 (409)
.+|-..+.+++++|+|+++++...++.|.+||.+.. ........ ..+...+..+++ .++++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 456678999999999998888888999999998743 33322211 123346899999 577776666643 889999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc--CCCCCeEE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNT 189 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~ 189 (409)
||. +++....... .+...+..++++++|+.+++...++.|.+||.. ++.+..+. .+...+..
T Consensus 105 ~d~-~g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~ 168 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGA--------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNG 168 (286)
T ss_dssp ECT-TSCEEEEECT--------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEE
T ss_pred ECC-CCcEEEEecC--------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEE
Confidence 994 3332211100 112247899999999877776678899999964 55555553 34567899
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc--ccceeEEEEcCCCCeEEEEeCCC-cEEEeeCCCCccc
Q 015301 190 VCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH--LEGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKMSSN 266 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~ 266 (409)
++++ ++++++++...++.|++||. .+..+..+..+ ...+..++++++|+++++...++ .|.+||...
T Consensus 169 i~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---- 238 (286)
T 1q7f_A 169 VVVN-DKQEIFISDNRAHCVKVFNY-----EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---- 238 (286)
T ss_dssp EEEC-SSSEEEEEEGGGTEEEEEET-----TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----
T ss_pred EEEC-CCCCEEEEECCCCEEEEEcC-----CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----
Confidence 9999 78888888888999999995 33444444332 35688999999999888887776 999999543
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
..+..+..+... .....++++|+|+++++ +.++.|++|++....
T Consensus 239 -------------------------------~~~~~~~~~~~~----~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 239 -------------------------------QLISALESKVKH----AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp -------------------------------CEEEEEEESSCC----SCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred -------------------------------CEEEEEcccCCC----CcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 223333322211 11345678899987777 579999999986543
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.84 E-value=8.2e-18 Score=156.50 Aligned_cols=284 Identities=10% Similarity=0.038 Sum_probs=184.9
Q ss_pred CCCCEEEEEeCC-C----cEEEEEcCCCeeeeeeee----cccccceEEEEEeCCCCcEEEEEecCC-----EEEEEEcC
Q 015301 50 NDGSFFVAASQE-S----NIKVYNVDKNWKIQKDIE----TKALRWTITDTSLSPDQRFLVYASICA-----IVNIVDVG 115 (409)
Q Consensus 50 ~~~~~l~t~~~d-~----~i~vw~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~w~~~ 115 (409)
|+|++++....+ + .+.+.+...+. ...++. ..++...+..++|||||++||.+..++ .|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGE-ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSC-CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCC-cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 888887755432 1 33444433332 222211 122444688999999999999876543 89999999
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe----------------EEEEECCCCeee--
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF----------------IYVYDLQANKCS-- 177 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~v~d~~~~~~~-- 177 (409)
+++...... . ...+..++|+|||+.|+.++.++. |++|++.+++..
T Consensus 160 tg~~~~~~~-~---------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 223 (710)
T 2xdw_A 160 GAKELPDVL-E---------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI 223 (710)
T ss_dssp TTEEEEEEE-E---------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE
T ss_pred CCCCCcccc-c---------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce
Confidence 887543211 0 002567999999999999887765 999999887632
Q ss_pred eEE--cCCCCCeEEEEEeCCCCcEEEEeeC-----CCeEEEecccccc--cCCc-eeeeeeccccceeEEEEcCCCCeEE
Q 015301 178 LRI--PAHKSDVNTVCFADETGHLIFSGSD-----DSLCKVWDRRCFI--SKGR-ANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 178 ~~~--~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
..+ ..|...+..+.|+ +++++|+..+. +..|.+||+.... ..+. ....+..+...+.. .|+|+|+.|+
T Consensus 224 ~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~ 301 (710)
T 2xdw_A 224 LCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFT 301 (710)
T ss_dssp EEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEE
T ss_pred EEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEE
Confidence 222 3355668899999 88888887664 5689999975100 0021 34455556655554 4888998877
Q ss_pred EEeCC----CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 248 SNGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 248 ~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
..+.. +.|.+||+.+... .....+..+.... .+..+.+++
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~----~~~~~~~~~ 345 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEE--------------------------------SKWKVLVPEHEKD----VLEWVACVR 345 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCG--------------------------------GGCEEEECCCSSC----EEEEEEEET
T ss_pred EEECCCCCCCEEEEEeCCCCCc--------------------------------ccceeccCCCCCC----eEEEEEEEc
Confidence 76653 3699999876321 0112222221110 122345666
Q ss_pred CCCEEEEEeCCCe--EEEEEccCCceEEEeccCCcceeeeEEecCcCeEE-e---ecCCCeEEEEecCCCc
Q 015301 324 AQKYIYTGSSDNS--VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLI-S---SSWDCNIVRWEIPGIG 388 (409)
Q Consensus 324 ~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s---~~~dg~i~iw~~~~~~ 388 (409)
++.++++...++. |++|++.+++.+..+..+.+.+..+.++|+++.|+ + ....+.|+.||+.+++
T Consensus 346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7888888888884 66677767888888888888899999999987554 2 2346899999997765
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=2.5e-19 Score=155.24 Aligned_cols=232 Identities=10% Similarity=0.027 Sum_probs=145.6
Q ss_pred ceeeEEecCceeEeeccc----eEEEEe-eecCCCceeecCCCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 015301 4 GREVNYSGRGRFSAADSC----HVLSRY-LPVNGPWKVDGMNSRV-YTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~----~~~~~~-~~~~~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
...++|||||++++.... ..++.+ ........+..+...+ ..+.|+|||++|+.++.++.|++|++.+++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~- 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV- 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE-
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE-
Confidence 456789999998665321 122222 1222233444444443 348899999999999999999999998874332
Q ss_pred eeecccccceEEE-------------------EEeCCCCcEEEEE-----ecCCEEEEEEcCCCccccccceeceeeeee
Q 015301 78 DIETKALRWTITD-------------------TSLSPDQRFLVYA-----SICAIVNIVDVGSSARESLANVTEIHKGLD 133 (409)
Q Consensus 78 ~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 133 (409)
....... .... +.|+|+++.++.+ ..+..|.+||+.+++......
T Consensus 117 ~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--------- 185 (396)
T 3c5m_A 117 IYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--------- 185 (396)
T ss_dssp EEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---------
T ss_pred EEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---------
Confidence 2221111 1111 3568888877654 356789999998776433221
Q ss_pred eecCCCCcceeeEEEEEcC-CCCeEEEEEec------CeEEEEECCCCeeeeEEcCC--CCCeEEEEEeCCCCcEEEEee
Q 015301 134 FSADGDEDEFGIFSVKFST-DGQELVAAGSD------NFIYVYDLQANKCSLRIPAH--KSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~ 204 (409)
+...+..+.|+| +++.|+..+.+ ..|.+||+..++... +..+ ...+..++|+ |+++.|+.++
T Consensus 186 -------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~s-pdg~~l~~~~ 256 (396)
T 3c5m_A 186 -------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWI-PDGSAMAYVS 256 (396)
T ss_dssp -------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEEC-TTSSCEEEEE
T ss_pred -------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEEC-CCCCEEEEEe
Confidence 112478899999 78877776543 368899987665333 3223 2357889999 7888776665
Q ss_pred CC-----CeEEEecccccccCCceeeeeeccccceeEEEEcC-CCCeEEEEe----------------CCCcEEEeeCCC
Q 015301 205 DD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRR-DGRYFISNG----------------KDQTTKLWDIRK 262 (409)
Q Consensus 205 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~~~ 262 (409)
.+ +.|++||+. .+.... +.... ... +.|+| +|+++++++ .+..|.+||+.+
T Consensus 257 ~~~~~~~~~l~~~d~~----~g~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPE----TLENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EETTTCCEEEEEECTT----TCCEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred cCCCCccceEEEEECC----CCCeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 43 459999974 333222 21111 223 88999 999888754 246899999876
Q ss_pred C
Q 015301 263 M 263 (409)
Q Consensus 263 ~ 263 (409)
.
T Consensus 330 ~ 330 (396)
T 3c5m_A 330 K 330 (396)
T ss_dssp T
T ss_pred C
Confidence 3
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=1.1e-17 Score=140.80 Aligned_cols=256 Identities=11% Similarity=0.100 Sum_probs=172.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC------------------------CcEEEEEcCCCeeeeeeeecccccceEEEEEeC
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQE------------------------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLS 94 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s 94 (409)
--+.+.+++++|+|+++++...+ ++|.+||..++...... . ..+-..+..++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~-~~~~~~p~gia~d 99 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-G-KNLFYLPHGLSID 99 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-C-TTTCSSEEEEEEC
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-C-CCccCCceEEEEC
Confidence 34779999999999999888777 47999999877544322 1 2233468999999
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEE-ecCeEEEEECC
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAG-SDNFIYVYDLQ 172 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~v~d~~ 172 (409)
|+++++++...++.|++|+....... ........ .......+...+..++++| ++.++++.+ .++.|++|| .
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~-~~~~~~~~----~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~ 173 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGP-LLILGRSM----QPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P 173 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCC-SEEESBTT----BCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEE-EEEecccC----CCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence 99998888888999999998654211 11110000 0000112333588999999 787777765 589999999 5
Q ss_pred CCeeeeEEcC----------CCCCeEEEEEeCCC-CcEEEEeeCCCeEEEecccccccCCceeeeee--ccccceeEEEE
Q 015301 173 ANKCSLRIPA----------HKSDVNTVCFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--GHLEGITFIDS 239 (409)
Q Consensus 173 ~~~~~~~~~~----------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~ 239 (409)
+++.+..+.. +-..+..++++ ++ +.++++...++.|++||.. .++.+..+. .+...+..+++
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d-~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALV-PHLDQLCVADRENGRIQCFKTD----TKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTTTTTCEEEEEE
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEE-CCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccccCCCcceeee
Confidence 6777666632 22348999999 55 8888888889999999963 456655553 35567888999
Q ss_pred cC------CCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 240 RR------DGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 240 ~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
+| +++.+++...+..|++||+.+.. .+..+.... ...
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~----------------------------------~~~~~~~~~---~~~ 291 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE----------------------------------IIDVFKPVR---KHF 291 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTCC----------------------------------EEEEECCSS---SCC
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCCe----------------------------------EEEEEcCCC---Ccc
Confidence 98 33333333345589999987632 222221100 001
Q ss_pred EEEEeeeecCCCCEEEEEeCCCeEEEEEccC
Q 015301 314 RCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS 344 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 344 (409)
.....++++|+|.++++...+++|++|++..
T Consensus 292 ~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 292 DMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2234667899998888888899999999854
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.83 E-value=1.4e-16 Score=142.11 Aligned_cols=278 Identities=12% Similarity=0.008 Sum_probs=188.1
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcC--CCccccccceec
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVG--SSARESLANVTE 127 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~--~~~~~~~~~~~~ 127 (409)
|.+.++++...+++|.++|..+++.+..+. ... .+..+.|+||++++++++.++.|.+||+. +.+... .+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--~i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--EIKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE-CSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--EEEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe-CCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--EEec
Confidence 445567777788999999999986655433 222 46789999999999999999999999995 443321 1111
Q ss_pred eeeeeeeecCCCCcceeeEEEEEc----CCCCeEEEEEe-cCeEEEEECCCCeeeeEEcCC-----------CCCeEEEE
Q 015301 128 IHKGLDFSADGDEDEFGIFSVKFS----TDGQELVAAGS-DNFIYVYDLQANKCSLRIPAH-----------KSDVNTVC 191 (409)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~ 191 (409)
......++|+ |+|+++++++. ++.|.++|..+.+.+..+... ...+..+.
T Consensus 239 --------------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 239 --------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp --------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred --------------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 1136789999 69999888876 589999999999988776421 12677888
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCccccccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 270 (409)
.++....+++....+|.|.++|.... ....+..+ ........+.|+|++++++++. .++.|.++|+.+.+.
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~--~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl----- 376 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDL--NNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL----- 376 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCS--SEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCC--ccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-----
Confidence 88555667777778899999996421 11111122 2334566789999999887765 578999999987432
Q ss_pred ccccccccccccccccccceeccccCccceeeeec-ccceeeeeEEEEeeeecCCCC-EEEEEe-CCCeEEEEEccC---
Q 015301 271 SRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKG-HSVLRTLIRCYFSPEYSTAQK-YIYTGS-SDNSVYIYDLVS--- 344 (409)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~v~i~d~~~--- 344 (409)
+..+.- ........... -++|++. ..+++. .++.|.++|..+
T Consensus 377 -----------------------------~~~i~vgg~~Phpg~g~~---~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 377 -----------------------------VAIEDTGGQTPHPGRGAN---FVHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp -----------------------------EEEEECSSSSBCCTTCEE---EEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred -----------------------------EEEEeccCcCCCCcccee---eECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 111111 00000000000 1456644 444443 468999999987
Q ss_pred ----CceEEEeccCCcceeeeEEecCcCeEEeecC-------CCeEEEEecCCC
Q 015301 345 ----GAQVAKLDFHNAPVRDCCWHPIYPMLISSSW-------DCNIVRWEIPGI 387 (409)
Q Consensus 345 ----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------dg~i~iw~~~~~ 387 (409)
.+.+.++......-..+..+|++++|..... .+.|.++|+.+.
T Consensus 425 ~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 425 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6778888765444455788999998877552 359999999876
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.82 E-value=9.1e-18 Score=155.73 Aligned_cols=280 Identities=10% Similarity=0.002 Sum_probs=178.8
Q ss_pred CCCCCEEEEEeCCC---cEEEEE--cCCCeeeeeeeec----ccccceEEEEEeCCCCcEEEEE-----ecCCEEEEEEc
Q 015301 49 SNDGSFFVAASQES---NIKVYN--VDKNWKIQKDIET----KALRWTITDTSLSPDQRFLVYA-----SICAIVNIVDV 114 (409)
Q Consensus 49 s~~~~~l~t~~~d~---~i~vw~--~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~~w~~ 114 (409)
+|+|++++....++ .-.+|. ...+. ...++.. .+|...+..++|||||++||.+ +.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 47899888766543 344454 43432 2222221 2345579999999999999954 33468999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe-------------EEEEECCCCee----e
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF-------------IYVYDLQANKC----S 177 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~v~d~~~~~~----~ 177 (409)
.+++......... .....++|+|||+.|+.++.+.. |++|++.+++. +
T Consensus 155 ~tg~~~~~~~~~~---------------~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv 219 (695)
T 2bkl_A 155 DSGEWSKVDVIEG---------------GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV 219 (695)
T ss_dssp TTCCBCSSCCBSC---------------CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred CCCCCcCCcccCc---------------ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE
Confidence 9887531111100 01257899999999999988765 99999988762 2
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEeeCCC----eEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe---
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDS----LCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG--- 250 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--- 250 (409)
.....|...+..+.|+ +++++|+..+.++ .|.+|+.. .+ ....+..+...+....+ ++|.+++...
T Consensus 220 ~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~----~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~ 292 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPG----EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGA 292 (695)
T ss_dssp ECCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTT----CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTTC
T ss_pred EecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCC----CC-ceEEeecCCCceEEEEe-cCCcEEEEECCCC
Confidence 2333455678999999 8888888777665 56666632 22 34445555556666666 5666444433
Q ss_pred CCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE
Q 015301 251 KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT 330 (409)
Q Consensus 251 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 330 (409)
.++.|.+||+.+.... ....+..+... ..+..++++ ++.++++
T Consensus 293 ~~~~l~~~d~~~~~~~--------------------------------~~~~l~~~~~~----~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARA--------------------------------SWKEIVPEDSS----ASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp TTCEEEEEBTTBCSGG--------------------------------GCEEEECCCSS----CEEEEEEEE-TTEEEEE
T ss_pred CCCEEEEEeCCCCCcc--------------------------------CCeEEecCCCC----CeEEEEEEE-CCEEEEE
Confidence 2578999998763210 01111111100 111233455 5788889
Q ss_pred EeCCCeEEEEEcc-CCceEEEeccC-CcceeeeEEecCcCeEE----eecCCCeEEEEecCCCc
Q 015301 331 GSSDNSVYIYDLV-SGAQVAKLDFH-NAPVRDCCWHPIYPMLI----SSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 331 ~~~dg~v~i~d~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~ 388 (409)
...|+..+||.+. +++....+..+ .+.|..++++|+++.|+ +....+.|++||+.+++
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9999988888765 46666667655 66788899999998666 33446889999998754
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.81 E-value=2.1e-17 Score=153.70 Aligned_cols=248 Identities=15% Similarity=0.126 Sum_probs=163.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE----
Q 015301 38 GMNSRVYTSQFSNDGSFFVAASQES-----NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---- 108 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---- 108 (409)
+|...+..++|||||++||.++.++ .|++||+.+++........ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCccccc
Confidence 3445689999999999998776543 8999999998655432211 12567899999999999887765
Q ss_pred ------------EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-----cCeEEEEEC
Q 015301 109 ------------VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----DNFIYVYDL 171 (409)
Q Consensus 109 ------------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~ 171 (409)
|++|++.++.......... ..+...+..+.|+|||++|+.++. +..|++||+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~ 266 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL 266 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred cccccccCCCCEEEEEECCCCcccceEEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEEC
Confidence 9999998765321111110 112224778999999999988876 568999999
Q ss_pred CC------Ce-eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC----CeEEEecccccccCCc--eeeeeecccc--ceeE
Q 015301 172 QA------NK-CSLRIPAHKSDVNTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGR--ANGVLMGHLE--GITF 236 (409)
Q Consensus 172 ~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~~~~--~v~~ 236 (409)
.+ +. ....+..+...+.. .|+ ++++.|+..+.. +.|.+||+. .+. ....+..|.. .+..
T Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~ 340 (710)
T 2xdw_A 267 QQESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFT----DPEESKWKVLVPEHEKDVLEW 340 (710)
T ss_dssp GGSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCEEEE
T ss_pred cccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCC----CCCcccceeccCCCCCCeEEE
Confidence 86 43 34556556666555 477 566666655442 369999975 222 2234444543 6788
Q ss_pred EEEcCCCCeEEEEeCCCc--EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 237 IDSRRDGRYFISNGKDQT--TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
+.|++++.++++...|+. |.+||+.++ ..+..+..+. .
T Consensus 341 ~~~~~~~~lv~~~~~~g~~~l~~~~~~~g----------------------------------~~~~~l~~~~------~ 380 (710)
T 2xdw_A 341 VACVRSNFLVLCYLHDVKNTLQLHDLATG----------------------------------ALLKIFPLEV------G 380 (710)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEEECCCS------S
T ss_pred EEEEcCCEEEEEEEECCEEEEEEEECCCC----------------------------------CEEEecCCCC------c
Confidence 899877778888888885 555665441 2222233221 1
Q ss_pred EEEeeeecCCCCEEEEEe----CCCeEEEEEccCCc
Q 015301 315 CYFSPEYSTAQKYIYTGS----SDNSVYIYDLVSGA 346 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~----~dg~v~i~d~~~~~ 346 (409)
.+..+.++|+++.++... ..+.|++||+.+++
T Consensus 381 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 381 SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 233446778887665432 24789999998877
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.81 E-value=1.5e-15 Score=126.15 Aligned_cols=283 Identities=10% Similarity=0.058 Sum_probs=189.5
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCC
Q 015301 37 DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGS 116 (409)
Q Consensus 37 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~ 116 (409)
..+...+.+++++++|+++++...++.|.+||.. +. ..... .......+.++++++++..+++...++.|..|+..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 3455789999999999988877667899999988 42 22221 12223478999999999988877778899999875
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE-EcCCCCCeEEEEEeCC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADE 195 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~ 195 (409)
++.... ... .....+..+++.+++.++++...++.|..||. +++.... ...+...+..+++. +
T Consensus 87 g~~~~~-~~~-------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~ 150 (299)
T 2z2n_A 87 GIIKEY-TLP-------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-S 150 (299)
T ss_dssp SCEEEE-ECS-------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-T
T ss_pred CcEEEE-eCC-------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-C
Confidence 221110 000 01225889999999987776666789999998 5554332 23345678999998 7
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccc
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
+++++++...++.|..||. .+..... .......+..++++++++++++...++.|.+||. +..
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------- 214 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-----SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------- 214 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-----TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC----------
T ss_pred CCCEEEEeCCCCEEEEEcC-----CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc----------
Confidence 8888887777889999995 2222221 2233456789999999987777666888999997 421
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE-ecc
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK-LDF 353 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~ 353 (409)
+..+..... ......++++++|+++++...++.|..||. +++.... +..
T Consensus 215 -------------------------~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~ 264 (299)
T 2z2n_A 215 -------------------------ITEFKIPTP----NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQI 264 (299)
T ss_dssp -------------------------EEEEECSST----TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSS
T ss_pred -------------------------EEEEECCCC----CCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCC
Confidence 111100000 012345577888987777667889999998 4543222 334
Q ss_pred CCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 354 HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 354 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
+...+.++++ +++.++++.. .+.|..++..+.
T Consensus 265 ~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 265 KSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 4567899999 8888777655 567777776553
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=4.4e-17 Score=137.57 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=155.6
Q ss_pred ceeeEEecCceeEeecc---ceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADS---CHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~---~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
..+++|++++..++... ....+ .......+.++...+.+++|+|+|++++++..++.|.+||.+++..... ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-~~ 83 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-FV 83 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-EE
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-ee
Confidence 35688888876544321 11122 2233345667778889999999999888888889999999987743322 21
Q ss_pred cccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 81 TKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
.+...+.+++++|+++++++...+ +.|.+||..++......... .+...+..++++|+|+.
T Consensus 84 --~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 84 --SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-------------STAYCIDDMVFDSKGGF 148 (333)
T ss_dssp --CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-------------SSCCCEEEEEECTTSCE
T ss_pred --CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-------------ccCCcccceEECCCCCE
Confidence 123479999999999988877666 68999998876543111100 01225889999999987
Q ss_pred EEEEEe------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE-EEeeCCCeEEEecccccccCCceee----
Q 015301 157 LVAAGS------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI-FSGSDDSLCKVWDRRCFISKGRANG---- 225 (409)
Q Consensus 157 l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~---- 225 (409)
+++... .+.|..+|..+++... +..+...+..++|+ ++++.| ++.+.++.|.+||++. .+....
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~---~g~~~~~~~~ 223 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALS-TDEKVLWVTETTANRLHRIALED---DGVTIQPFGA 223 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECT---TSSSEEEEEE
T ss_pred EEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecC---CCcCcccccc
Confidence 766543 3567777766555433 22233457899999 777755 5555678999999741 111111
Q ss_pred ----eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 226 ----VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 226 ----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.+.++ ..+..++++++|+++++...++.|.+||..
T Consensus 224 ~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 224 TIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 11111 367889999999988877778899999974
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.81 E-value=2.7e-17 Score=152.53 Aligned_cols=250 Identities=12% Similarity=0.035 Sum_probs=160.7
Q ss_pred cCCCCeEEEEECCCCCEEE-----EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE----
Q 015301 38 GMNSRVYTSQFSNDGSFFV-----AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI---- 108 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~-----t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---- 108 (409)
+|...+..++|||||++|| .|+.+..|++||+++++..... ..... ....++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 4666799999999999998 3444578999999998543110 11111 1157899999999999988765
Q ss_pred ---------EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC----eEEEEECCCCe
Q 015301 109 ---------VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN----FIYVYDLQANK 175 (409)
Q Consensus 109 ---------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~ 175 (409)
|++|++.++......... ...+...+..+.|+|+|++|+.++.++ .|++++..+++
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~-----------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHE-----------RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEEC-----------CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEe-----------cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 999999887643111111 012223578899999999999888776 78888776665
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCce--eeeeecc--ccceeEEEEcCCCCeEEE
Q 015301 176 CSLRIPAHKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRA--NGVLMGH--LEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~ 248 (409)
. ..+..+...+....+. . +.+++... .++.|.+||+. .+.. ...+..+ ...+..++++ ++.++++
T Consensus 264 ~-~~l~~~~~~~~~~~~~-~-g~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 264 F-RLLVKGVGAKYEVHAW-K-DRFYVLTDEGAPRQRVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp C-EEEEECSSCCEEEEEE-T-TEEEEEECTTCTTCEEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE
T ss_pred e-EEeecCCCceEEEEec-C-CcEEEEECCCCCCCEEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE
Confidence 4 3444455566666664 4 44555544 25789999975 2221 2233333 4457888888 6778888
Q ss_pred EeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEE
Q 015301 249 NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYI 328 (409)
Q Consensus 249 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 328 (409)
...|+..++|.+... +.....+..+. ...+..+.++|+++.+
T Consensus 336 ~~~dg~~~l~~~~~~---------------------------------g~~~~~l~~~~-----~~~v~~~~~s~d~~~l 377 (695)
T 2bkl_A 336 YLKDATSEVRVATLK---------------------------------GKPVRTVQLPG-----VGAASNLMGLEDLDDA 377 (695)
T ss_dssp EEETTEEEEEEEETT---------------------------------CCEEEECCCSS-----SSEECCCBSCTTCSEE
T ss_pred EEECCEEEEEEEeCC---------------------------------CCeeEEecCCC-----CeEEEEeecCCCCCEE
Confidence 888998888865420 11111111110 0123345677888777
Q ss_pred EEEe----CCCeEEEEEccCCce
Q 015301 329 YTGS----SDNSVYIYDLVSGAQ 347 (409)
Q Consensus 329 ~~~~----~dg~v~i~d~~~~~~ 347 (409)
+... ..+.|++||+.+++.
T Consensus 378 ~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 378 YYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEcCCCCCCEEEEEECCCCcE
Confidence 6333 347899999988774
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=2.2e-16 Score=134.08 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=123.6
Q ss_pred CCeEEEEECCCCCEEEEEeCC---C--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC---------
Q 015301 41 SRVYTSQFSNDGSFFVAASQE---S--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--------- 106 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d---~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------- 106 (409)
..+..++|||||++||.++.+ + .|.+|++.+++... .... .. +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK-ILEA---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE-EEEE---SE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE-EEcC---CC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 568899999999999987754 3 37888888774332 2221 22 8899999999999988743
Q ss_pred ------------------CEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC---
Q 015301 107 ------------------AIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--- 164 (409)
Q Consensus 107 ------------------g~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--- 164 (409)
..|.+||+.+++. ..... . .+..++|+|+| .++++..++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-----------------~~~~~~~spdg-~~~~~~~~~~~~ 194 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-----------------RFSSGIWHRDK-IVVNVPHREIIP 194 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E-----------------TTCEEEEETTE-EEEEEECCCSSC
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-----------------CcccccCCCCe-EEEEEecccccc
Confidence 5788999987754 21111 0 26788999999 777665432
Q ss_pred ------eEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC--------CeEEEecccccccCCceeeeeecc
Q 015301 165 ------FIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGH 230 (409)
Q Consensus 165 ------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~ 230 (409)
.|.++| +++.. .+..+ ..+..+ + |+++.|+.++.+ ..|.+|| .+........+
T Consensus 195 ~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--s-pdg~~l~~~~~~~~~~~~~~~~l~~~d------~~~~~~l~~~~ 261 (347)
T 2gop_A 195 QYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--D-SDGERILLYGKPEKKYMSEHNKLYIYD------GKEVMGILDEV 261 (347)
T ss_dssp CSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--E-ECSSCEEEEECCSSSCCCSSCEEEEEC------SSCEEESSTTC
T ss_pred cccccccEEEeC--CCceE-EeccC-cceeeE--C-CCCCEEEEEEccccCCccccceEEEEC------CCceEeccccC
Confidence 455555 55543 34334 455544 7 788888776644 3677777 23333334455
Q ss_pred ccceeE-EEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 231 LEGITF-IDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 231 ~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
...+.. +.|+ ++ ++++++.++.+++| +.+
T Consensus 262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 667776 8999 88 88899999999999 863
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.79 E-value=2.5e-16 Score=130.49 Aligned_cols=247 Identities=9% Similarity=0.066 Sum_probs=166.6
Q ss_pred ceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 34 WKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
..+..+.....+++|+|+|+ +++++..++.|..|+.+++ ..... .+...+.+++++|+++++++...++.|.+|
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 45566677789999999998 7788888899999999876 22222 233468999999999988877777899999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE----E-------------ecCeEEEEECCCCe
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA----G-------------SDNFIYVYDLQANK 175 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~-------------~d~~i~v~d~~~~~ 175 (409)
|..+++.......... .....+..++++|+|+++++. + ..+.|..++.. ++
T Consensus 96 d~~~g~~~~~~~~~~~-----------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (296)
T 3e5z_A 96 REPGGEWESIADSFEG-----------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT 163 (296)
T ss_dssp CSTTCCEEEEECEETT-----------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred cCCCCcEEEEeeccCC-----------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence 9977764322211100 001136789999999977763 2 12466666655 44
Q ss_pred eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCce---eeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 176 CSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRA---NGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
...+..+...+..++|+ ++++.+++.+.++.|.+||+. ..+.. ...+..+...+..++++++|+++++. +
T Consensus 164 -~~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~---~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~ 236 (296)
T 3e5z_A 164 -LSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLN---ARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G 236 (296)
T ss_dssp -EEEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEEC---SSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred -EEEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEEC---CCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence 33445566778999999 788888777788999999974 12222 12222345566789999999866655 7
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeee-cCCCCEEEEE
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEY-STAQKYIYTG 331 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~ 331 (409)
+.|.+||... +.+..+..+.. ..+++| +|+++.|+++
T Consensus 237 ~~v~~~~~~g-----------------------------------~~~~~~~~~~~-------~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 237 DGVHVLTPDG-----------------------------------DELGRVLTPQT-------TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp TEEEEECTTS-----------------------------------CEEEEEECSSC-------CCEEEEESTTSCEEEEE
T ss_pred CeEEEECCCC-----------------------------------CEEEEEECCCC-------ceeEEEECCCCCEEEEE
Confidence 8899999753 22333333321 223456 5788989888
Q ss_pred eCCCeEEEEEccCCce
Q 015301 332 SSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 332 ~~dg~v~i~d~~~~~~ 347 (409)
+.++ +.-++..+.+.
T Consensus 275 t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 275 VSTE-FWSIETNVRGL 289 (296)
T ss_dssp ETTE-EEEEECSCCBC
T ss_pred cCCe-EEEEEcccccc
Confidence 8764 55556655543
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.78 E-value=2e-16 Score=129.33 Aligned_cols=242 Identities=7% Similarity=-0.018 Sum_probs=162.9
Q ss_pred eEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
.+.+++++++++.++ +...++.|.+|+..+........ .....+.+++++++++.+++.. ++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~~~p~~i~~~~~g~l~v~~~-~~~ 88 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF---------------NGLYQPQGLAVDGAGTVYVTDF-NNR 88 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCC---------------CSCCSCCCEEECTTCCEEEEET-TTE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEee---------------CCcCCcceeEECCCCCEEEEcC-CCE
Confidence 578899999998776 44678899999876543221110 0112477899999998555544 889
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCe
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (409)
|.+||................+..+++. ++++++++...++.|.+|+.. ..............+..+++++++++
T Consensus 89 i~~~d~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g~l 163 (270)
T 1rwi_B 89 VVTLAAGSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNSGNV 163 (270)
T ss_dssp EEEECTTCSCCEECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTT----CCSCEECCCCSCCSCCCEEECTTCCE
T ss_pred EEEEeCCCceEeeeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECC----CceeEeeccccCCCceeEEEeCCCCE
Confidence 9999987654332222233678999999 788888877778899999843 22222222223346788999999997
Q ss_pred EEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC
Q 015301 246 FISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ 325 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 325 (409)
+++...++.|.+||....... ....... .....++++++|
T Consensus 164 ~v~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~------~~p~~i~~d~~g 203 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAESNNQV----------------------------------VLPFTDI------TAPWGIAVDEAG 203 (270)
T ss_dssp EEEEGGGTEEEEECTTTCCEE----------------------------------ECCCSSC------CSEEEEEECTTC
T ss_pred EEEECCCCEEEEEecCCCceE----------------------------------eecccCC------CCceEEEECCCC
Confidence 777777889999997652110 0000000 112345788889
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 326 KYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.++++...++.|.+|+............+...+.+++++++++++++...++.|+++++...+.
T Consensus 204 ~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 8777777789999999876554333223345789999999999888888899999999876543
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.78 E-value=5.5e-15 Score=125.54 Aligned_cols=288 Identities=10% Similarity=-0.039 Sum_probs=183.1
Q ss_pred EECCCCCEEEEEeC--CC---cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEE
Q 015301 47 QFSNDGSFFVAASQ--ES---NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNI 111 (409)
Q Consensus 47 ~~s~~~~~l~t~~~--d~---~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~ 111 (409)
...|+++++.+... .. +|.+||..+++.+.... ... .. .++++||+++|+++. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~-~g~---~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGF---LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEec-CCC---CC-CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 44578887777653 22 78999999886554322 221 23 899999999999886 3678999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeE-EcCCCCCeE
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLR-IPAHKSDVN 188 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~~v~ 188 (409)
||..+.+............ + ........++|+|+|++|++++. ++.|.++| .+++.+.. +... .
T Consensus 102 iD~~t~~~~~~i~~~~~~~---~-----~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~--- 168 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPR---F-----DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T--- 168 (373)
T ss_pred EECCCCcEEEEEECCCccc---c-----ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---
Confidence 9998765433222110000 0 00012457999999999999874 47899999 99998877 6532 2
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-----ccccce-eEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-----GHLEGI-TFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
++.+.|.....+++.+.||.+.++|. .++...... ....++ ....+.+++..++..+.++.+.+.|+..
T Consensus 169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-----~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLCAQGGLAKTDH-----AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred eEEEEeCCCceEEEEcCCCCEEEEEC-----CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 24455455567777888999999995 222221111 111121 2344566665555555778899999865
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeeccc----ceeeeeEEEEeeeecCCCCEEEEEeC-----
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS----- 333 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~----- 333 (409)
..... +..+.... ...........+.++|+++.++++..
T Consensus 244 ~~~~v--------------------------------~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 244 AGATN--------------------------------KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred CcceE--------------------------------eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 22110 00000000 00000001122457888888887653
Q ss_pred -----CCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeec-CCCeEEEEecCCCccc
Q 015301 334 -----DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 -----dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 390 (409)
++.|.++|..+++.+.++.. ......++|+||++ .++++. .++.|.++|+.+.+..
T Consensus 292 ~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred cccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 35799999999999999863 44689999999999 788877 5899999999887654
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=2e-14 Score=128.23 Aligned_cols=302 Identities=10% Similarity=0.065 Sum_probs=191.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeeeeeecccccceEEEEEeC----CCCcEEEEEe-cCCEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVD--KNWKIQKDIETKALRWTITDTSLS----PDQRFLVYAS-ICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~-~dg~i~~w 112 (409)
...+..+.|||||+++++++.|+.|.+||+. +.+.+.... ... ....++|+ |||++++++. .++.+.++
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~-~G~---~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-IGS---EARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE-CCS---EEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-cCC---CCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 3467799999999999999999999999995 554444332 222 46889999 6999988776 45899999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCc-ceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeee--eEEcCCCCCeE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDED-EFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCS--LRIPAHKSDVN 188 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~--~~~~~~~~~v~ 188 (409)
|..+.+........... ... ...| ...+..+..++++..+++. ..+|.|.++|....+.+ ..+. ......
T Consensus 272 D~~t~~~~~~i~~~~~~----~~~-~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~ 345 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMT----YDE-QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLH 345 (567)
T ss_dssp ETTTCCEEEEEECCEEC----TTT-CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEE
T ss_pred ECCCCcEEEEEeccccc----ccc-ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-cccccc
Confidence 98877654332221100 000 0001 1147788888887665544 44699999998775432 2232 345577
Q ss_pred EEEEeCCCCcEEEEee-CCCeEEEecccccccCCceeeeeec-----cccceeEEEEcCCCCeE-EEEe-CCCcEEEeeC
Q 015301 189 TVCFADETGHLIFSGS-DDSLCKVWDRRCFISKGRANGVLMG-----HLEGITFIDSRRDGRYF-ISNG-KDQTTKLWDI 260 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l-~~~~-~dg~i~iwd~ 260 (409)
++.|+ +++++++++. .++.|.++|+. +++....+.. |.+.-..+ ++|++..+ +++. .++.|.++|.
T Consensus 346 d~~~~-pdgr~~~va~~~sn~V~ViD~~----t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 346 DGGLD-GSHRYFITAANARNKLVVIDTK----EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp EEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CceEC-CCCCEEEEEeCCCCeEEEEECC----CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 88999 7888776655 67899999975 4444443332 33211122 57875544 4443 4689999998
Q ss_pred CCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-------
Q 015301 261 RKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS------- 333 (409)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------- 333 (409)
........ ..+.+..+...... ...+..+|++++|.+...
T Consensus 420 ~~~~~~~~---------------------------~~kvv~~i~~~g~g------~~~i~~~p~~~~l~v~~~~~~~~~~ 466 (567)
T 1qks_A 420 DPEGHPDN---------------------------AWKILDSFPALGGG------SLFIKTHPNSQYLYVDATLNPEAEI 466 (567)
T ss_dssp CTTTCTTT---------------------------BTSEEEEEECSCSC------CCCEECCTTCSEEEEECTTCSSHHH
T ss_pred CCCCCccc---------------------------cCEEEEEEecCCCC------CEEEEeCCCCCeEEEecCCCCCccc
Confidence 76211100 01223333322110 112346889999988763
Q ss_pred CCeEEEEEccCC-----c-eEEEec--------cCCcceeeeEEecCcCeEEeec-----CCCeEEEEecCCCccc
Q 015301 334 DNSVYIYDLVSG-----A-QVAKLD--------FHNAPVRDCCWHPIYPMLISSS-----WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 dg~v~i~d~~~~-----~-~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~ 390 (409)
..+|.++|+.+. . ....+. .....+..+.|+|+|+.+..+. .++.|.++|..+.+..
T Consensus 467 ~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 467 SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp HTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 358999999877 2 123332 1245789999999999665542 3799999999887654
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.77 E-value=2.4e-14 Score=118.88 Aligned_cols=279 Identities=10% Similarity=0.039 Sum_probs=186.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
....+.+++++++|+++++...++.|.+|+.. +.. ... ........+.++++.++++.+++...++.|..||.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-KEF-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-EEE-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 45678999999999988877778899999987 422 221 122223468999999999888877668899999987 43
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeee-EEcCCCCCeEEEEEeCCCC
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSL-RIPAHKSDVNTVCFADETG 197 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 197 (409)
.... ... .....+..+++.++++++++...++.|..+|.. ++... .+......+..+++. +++
T Consensus 94 ~~~~-~~~-------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~g 157 (300)
T 2qc5_A 94 FTEY-PLP-------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SDN 157 (300)
T ss_dssp EEEE-ECS-------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TTS
T ss_pred eEEe-cCC-------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CCC
Confidence 3211 100 011258899999999877766557899999987 55442 233345678999998 788
Q ss_pred cEEEEeeCCCeEEEecccccccCCceee-eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccc
Q 015301 198 HLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDY 276 (409)
Q Consensus 198 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 276 (409)
+++++...++.|..+|.. +.... ....+...+..+++++++.++++....+.|.+||... .
T Consensus 158 ~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~------------ 219 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITNT-----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-E------------ 219 (300)
T ss_dssp SEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-C------------
T ss_pred CEEEEecCCCeEEEECCC-----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-c------------
Confidence 877776667889999852 22222 1223345688999999998777666677899998732 1
Q ss_pred ccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE-EEeccCC
Q 015301 277 DWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV-AKLDFHN 355 (409)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~ 355 (409)
...+..... ......++++++|++.++...++.|..||. +++.. ..+....
T Consensus 220 -----------------------~~~~~~~~~----~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 271 (300)
T 2qc5_A 220 -----------------------ISEYDIPTP----NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTEN 271 (300)
T ss_dssp -----------------------EEEEECSST----TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTT
T ss_pred -----------------------EEEEECCCC----CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccC
Confidence 000100000 012235567888887777767789999998 45433 2233345
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
..+.+++++++|+++++.. . .|..++..
T Consensus 272 ~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 272 AEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 6789999999998666655 4 77777653
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.77 E-value=4.6e-16 Score=127.19 Aligned_cols=242 Identities=8% Similarity=0.021 Sum_probs=162.0
Q ss_pred CeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 42 RVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
...+++++++|++++ +...++.|.+|+..+...... . ......+.+++++++++.+++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~--~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--P-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC--C-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE--e-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 788999999999777 546788999999765432211 1 11223578899999998666655 889999998765432
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
.... .....+..++++++|+.+++...++.|.+|+..+.............+.++++. ++++++
T Consensus 101 ~~~~---------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~ 164 (270)
T 1rwi_B 101 VLPF---------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVY 164 (270)
T ss_dssp ECCC---------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCEE
T ss_pred eeec---------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCEE
Confidence 1110 001247899999999877766668899999876554333222333467889999 788877
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
++...++.|.+||.. ..........+...+..++++++|.++++...++.|.+||......
T Consensus 165 v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--------------- 225 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--------------- 225 (270)
T ss_dssp EEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------------
T ss_pred EEECCCCEEEEEecC----CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------------
Confidence 777778899999964 2222222223336688999999998777777788999999765211
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
...... . ......++++++|+++++...++.|++|++...+.
T Consensus 226 --------------------~~~~~~-~----~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 226 --------------------TVLPFT-G----LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp --------------------EECCCC-S----CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred --------------------eeeccC-C----CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 000000 0 01234557888999888888999999999876654
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=8.4e-16 Score=127.37 Aligned_cols=232 Identities=10% Similarity=-0.010 Sum_probs=156.0
Q ss_pred ceeeEEecCce-eEee-ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRGR-FSAA-DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg~-~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
.+.++|+|+|+ .+.+ .....+..+-+......+..+...+.+++++|+|+++++...++.|.+||..++.........
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc
Confidence 56799999997 3333 333344555444444566678888999999999998888777789999999776432221111
Q ss_pred c-cccceEEEEEeCCCCcEEEEE----ec-------------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcce
Q 015301 82 K-ALRWTITDTSLSPDQRFLVYA----SI-------------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEF 143 (409)
Q Consensus 82 ~-~~~~~v~~~~~s~~~~~l~~~----~~-------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (409)
. .....+..++++|+|+++++. +. .+.|..++.. ++..... .+..
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----------------~~~~ 172 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI----------------RDRV 172 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE----------------CCCS
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee----------------cCCC
Confidence 1 111246789999999988873 21 2455555544 2221110 0111
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECC-CCee---eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccccc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQ-ANKC---SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFIS 219 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 219 (409)
....++|+|+++.+++.+.++.|.+|++. +++. ...+..+...+..+++. ++++++++. ++.|.+||.
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~----- 244 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD-AGGLIWASA--GDGVHVLTP----- 244 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB-TTSCEEEEE--TTEEEEECT-----
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC-CCCCEEEEc--CCeEEEECC-----
Confidence 46789999999988666667899999986 4544 23333455667889999 788876665 788999995
Q ss_pred CCceeeeeeccccceeEEEE-cCCCCeEEEEeCCCcEEEeeCCC
Q 015301 220 KGRANGVLMGHLEGITFIDS-RRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.++....+..+.. +.+++| .|+++.|++++.++ +..++.++
T Consensus 245 ~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp TSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 3566666666666 899999 68888888888764 55555554
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.76 E-value=2.5e-15 Score=125.67 Aligned_cols=293 Identities=12% Similarity=0.014 Sum_probs=186.4
Q ss_pred EEECCCCCEEEEEeC-----CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEE
Q 015301 46 SQFSNDGSFFVAASQ-----ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVN 110 (409)
Q Consensus 46 ~~~s~~~~~l~t~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~ 110 (409)
....|+++.+++... ++.|.+.|..+.+.+........ + . ++++||+++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 455799998888765 57999999999876655543322 3 4 99999999988775 367899
Q ss_pred EEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 111 IVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
+||..+.+............ .........++|+|||++++++.. ++.|.++|+.+++.+.++....
T Consensus 113 viD~~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---- 180 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPR--------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---- 180 (386)
T ss_dssp EECTTTCCEEEEEEETTCCC--------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----
T ss_pred EEECCCCeEEEEEECCCccc--------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----
Confidence 99999887544332211000 000012556899999999998874 6899999999999998885422
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc----cccee-EEEE-cCCCCeEEEEeCCCcEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH----LEGIT-FIDS-RRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~v~-~~~~-~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+....|.....+++.+.||.+.+.++.. .++.......+ ..++. ...| .++|++++ .+.+|.+.+.|+..
T Consensus 181 ~~~~~P~g~~~~~~~~~DG~~~~v~~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 181 CYHIFPTAPDTFFMHCRDGSLAKVAFGT---EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSS 256 (386)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEECCS---SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTT
T ss_pred cceeecCCCceeEEECCCCCEEEEECCC---CCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCC
Confidence 1222345667777888899998888641 12221111111 12221 2345 36776544 55689999999876
Q ss_pred CcccccccccccccccccccccccccceeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC--------
Q 015301 263 MSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-------- 333 (409)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-------- 333 (409)
...... ..+..+..... ...........+++++++.++....
T Consensus 257 ~~~~v~-----------------------------~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk 307 (386)
T 3sjl_D 257 GDAKFL-----------------------------PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 307 (386)
T ss_dssp SSCEEC-----------------------------CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred Ccceee-----------------------------cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccC
Confidence 321100 00000000000 0000000012346778888877653
Q ss_pred --CCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEee-cCCCeEEEEecCCCcc
Q 015301 334 --DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISS-SWDCNIVRWEIPGIGE 389 (409)
Q Consensus 334 --dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~~~ 389 (409)
.+.|.++|+.+++.+.++.. ...+..|++++|++ +|+++ ..++.|.++|..+++.
T Consensus 308 ~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 308 TASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp SCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 25799999999999999874 34788999999997 66664 5689999999987654
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.76 E-value=8.6e-16 Score=143.50 Aligned_cols=279 Identities=10% Similarity=0.027 Sum_probs=174.8
Q ss_pred CCCCCEEEEEeCCCc---EEEEEcCC----Ceeeeeeee----cccccceEEEEEeCCCCcEEEEEecC-----CEEEEE
Q 015301 49 SNDGSFFVAASQESN---IKVYNVDK----NWKIQKDIE----TKALRWTITDTSLSPDQRFLVYASIC-----AIVNIV 112 (409)
Q Consensus 49 s~~~~~l~t~~~d~~---i~vw~~~~----~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w 112 (409)
+|+|++++....++. -.+|..+. +.....++. ..++...+..++|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489999887654432 45555432 212222211 12233468899999999999987654 469999
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe--------------EEEEECCCCee--
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF--------------IYVYDLQANKC-- 176 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~v~d~~~~~~-- 176 (409)
|+.+++.... .. .. ..+..++|+|| +.|+.+..++. |++|++.++..
T Consensus 195 dl~tg~~~~~-~~----~~-----------~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 195 GVADGKPLAD-EL----KW-----------VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp ETTTCCEEEE-EE----EE-----------EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred ECCCCCCCCc-cC----CC-----------ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence 9998875321 00 00 01357899999 98988876543 89999987652
Q ss_pred eeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCC-----eEEEecccccccCC--ceeeeeeccccceeEEEEcCCCCeEE
Q 015301 177 SLRI--PAHKSDVNTVCFADETGHLIFSGSDDS-----LCKVWDRRCFISKG--RANGVLMGHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 177 ~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 247 (409)
...+ ..+...+..+.|+ +++++|+..+.++ .|.+||+. .+ .....+..+...+.... +|+|+.|+
T Consensus 258 ~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~ 331 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALIPDLKAQWDFV-DGVGDQLW 331 (741)
T ss_dssp EEEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEECSSSSCEEEE-EEETTEEE
T ss_pred EEEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEecCCCCceEEEE-eccCCEEE
Confidence 2223 2333458899999 8998888777544 89999975 32 21344444555555443 48898888
Q ss_pred EEeCC----CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC
Q 015301 248 SNGKD----QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST 323 (409)
Q Consensus 248 ~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 323 (409)
..+.+ +.|.+||+.+.. . .....+..+.. .+..+.++
T Consensus 332 ~~s~~~~~~~~l~~~d~~~~~-~-------------------------------~~~~l~~~~~~------~l~~~~~~- 372 (741)
T 1yr2_A 332 FVSGDGAPLKKIVRVDLSGST-P-------------------------------RFDTVVPESKD------NLESVGIA- 372 (741)
T ss_dssp EEECTTCTTCEEEEEECSSSS-C-------------------------------EEEEEECCCSS------EEEEEEEE-
T ss_pred EEECCCCCCCEEEEEeCCCCc-c-------------------------------ccEEEecCCCC------eEEEEEEE-
Confidence 77653 459999986521 0 00111111111 11122344
Q ss_pred CCCEEEEEeCCCeEEEEEcc-CCceEEEeccC-CcceeeeEEecCcCeEE----eecCCCeEEEEecCCCcc
Q 015301 324 AQKYIYTGSSDNSVYIYDLV-SGAQVAKLDFH-NAPVRDCCWHPIYPMLI----SSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~~~~~~~ 389 (409)
++.++++...|+..+||.+. +++....+..+ .+.+..+.++|+++.|+ +....+.|++||+.+++.
T Consensus 373 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 46788888889887777654 46666666643 66789999999988555 334568999999977543
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=1.4e-15 Score=127.69 Aligned_cols=260 Identities=7% Similarity=-0.009 Sum_probs=172.4
Q ss_pred CCCcEEEEEcCCCeeeeeeee---cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeec
Q 015301 60 QESNIKVYNVDKNWKIQKDIE---TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSA 136 (409)
Q Consensus 60 ~d~~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 136 (409)
.+++|.+||.++++....... .......+..+.+. +++.+++...++.|.+||..+++.......
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----------- 82 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----------- 82 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-----------
Confidence 378999999998854432211 11122346777774 455566666789999999998876433211
Q ss_pred CCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCC-----CCeEEEEEeCCCCcEEEEee-CCCeE
Q 015301 137 DGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFADETGHLIFSGS-DDSLC 209 (409)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i 209 (409)
......++++++++ ++++. .++.|.+||..+++....+.... .....+++. ++.++++.. .++.|
T Consensus 83 -----~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 83 -----FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRI 154 (328)
T ss_dssp -----CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEE
T ss_pred -----CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEE
Confidence 11478899989885 55554 78999999999998887765433 145677773 444454443 48899
Q ss_pred EEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC----------CcEEEeeCCCCcccccccccccccccc
Q 015301 210 KVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD----------QTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
.++|+. +.+....+.. ......+.++|+|++++++..+ +.|.++|..+.+
T Consensus 155 ~viD~~----t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--------------- 214 (328)
T 3dsm_A 155 LKIDTE----TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--------------- 214 (328)
T ss_dssp EEEETT----TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---------------
T ss_pred EEEECC----CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---------------
Confidence 999965 5555555543 2345678899999977776655 789999987632
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEE--eccCCcc
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAK--LDFHNAP 357 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~--~~~~~~~ 357 (409)
....+..... .....++++|+++.|+++.. .|.+||..+++.... +..+...
T Consensus 215 -------------------v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 215 -------------------VEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp -------------------EEEEEECCTT-----CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred -------------------EEEEEecCCC-----CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence 1112211000 11245678999999988765 899999988876421 2222456
Q ss_pred eeeeEEecC-cCeEEee----cCCCeEEEEecC
Q 015301 358 VRDCCWHPI-YPMLISS----SWDCNIVRWEIP 385 (409)
Q Consensus 358 v~~~~~s~~-~~~l~s~----~~dg~i~iw~~~ 385 (409)
...++++|+ +.++++. ..++.|.+||..
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 889999994 5555555 568999999987
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=2.8e-15 Score=121.97 Aligned_cols=186 Identities=11% Similarity=0.073 Sum_probs=138.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
.+++|++++.|+.|++||.++++.+.+...... ..+.++.++|+|++|+ +.++.|..||. +++........
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~---- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP---- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC----
Confidence 467899999999999999989977665443221 2578889999999888 34778999998 56543332221
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCeeeeEEcC------CCCCeEEEEEeCCCCcEEEEe
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKCSLRIPA------HKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~ 203 (409)
....+.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++. ++++++++.
T Consensus 75 ----------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~~ 142 (276)
T 3no2_A 75 ----------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVPL 142 (276)
T ss_dssp ----------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEEE
T ss_pred ----------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEEEe
Confidence 1124788999999999998877 778888885 6777666531 11234456677 789999999
Q ss_pred eCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..++.|..||. .++.+..+... ..+.++...++++.++++..++.|..+|..++
T Consensus 143 ~~~~~v~~~d~-----~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 143 FATSEVREIAP-----NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp TTTTEEEEECT-----TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred cCCCEEEEECC-----CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 99999999994 36777666554 44567788899999999888889999998863
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=2.3e-15 Score=122.46 Aligned_cols=213 Identities=13% Similarity=0.055 Sum_probs=157.3
Q ss_pred CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe
Q 015301 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 175 (409)
.++.|++++.++.|.+||.++++......... ...+.++.++|+|++++ +.++.|..||. +++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--------------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK--------------GWECNSVAATKAGEILF--SYSKGAKMITR-DGR 66 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT--------------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc--------------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC
Confidence 46789999999999999998887654433211 01478899999999887 45788999999 899
Q ss_pred eeeEEcCC-CCCeEEEEEeCCCCcEEEEeeC-CCeEEEecccccccCCceeeeee------ccccceeEEEEcCCCCeEE
Q 015301 176 CSLRIPAH-KSDVNTVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLM------GHLEGITFIDSRRDGRYFI 247 (409)
Q Consensus 176 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~ 247 (409)
.+..+..+ ...+.++.+. ++++++++.+. ++.+..+|. .++.+..+. .+......+.+.++|++++
T Consensus 67 ~~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-----~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv 140 (276)
T 3no2_A 67 ELWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-----KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV 140 (276)
T ss_dssp EEEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-----TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred EEEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-----CCCEEEEEeccCCCCcccccccCceECCCCCEEE
Confidence 99888764 3578888998 89999998887 777877774 444444432 2223455677899999999
Q ss_pred EEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCE
Q 015301 248 SNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKY 327 (409)
Q Consensus 248 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 327 (409)
+...++.|..||.. ++ .+..+..... .++....++|++
T Consensus 141 ~~~~~~~v~~~d~~-G~----------------------------------~~w~~~~~~~-------~~~~~~~~~g~~ 178 (276)
T 3no2_A 141 PLFATSEVREIAPN-GQ----------------------------------LLNSVKLSGT-------PFSSAFLDNGDC 178 (276)
T ss_dssp EETTTTEEEEECTT-SC----------------------------------EEEEEECSSC-------CCEEEECTTSCE
T ss_pred EecCCCEEEEECCC-CC----------------------------------EEEEEECCCC-------ccceeEcCCCCE
Confidence 99999999999976 32 2333332211 122345678999
Q ss_pred EEEEeCCCeEEEEEccCCceEEEeccCC------cceeeeEEecCcCeEEee
Q 015301 328 IYTGSSDNSVYIYDLVSGAQVAKLDFHN------APVRDCCWHPIYPMLISS 373 (409)
Q Consensus 328 l~~~~~dg~v~i~d~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~s~ 373 (409)
++++..+++|..+|..+++.+.++..+. ..+..++..++|.++++.
T Consensus 179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999989999999999999998886432 236788888999877776
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.74 E-value=1.7e-15 Score=141.59 Aligned_cols=202 Identities=13% Similarity=0.093 Sum_probs=131.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE-----
Q 015301 39 MNSRVYTSQFSNDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI----- 108 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----- 108 (409)
|...+..++|||||++||.++.+ ..|++||+++++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 44478899999999999877653 469999999986543211 1112357899999 99998876543
Q ss_pred ---------EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC-----eEEEEECCCC
Q 015301 109 ---------VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-----FIYVYDLQAN 174 (409)
Q Consensus 109 ---------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~ 174 (409)
|++|++.++.......... ..+...+..+.|+|||++|+..+.++ .|++||+.++
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 8899987765321111100 11222478899999999998887654 8999999877
Q ss_pred --eeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC----CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEE
Q 015301 175 --KCSLRIPAHKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFIS 248 (409)
Q Consensus 175 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 248 (409)
+....+..+...+.... . ++++.|+..+. ++.|.+||+.... ......+..+...+..+.++ ++.++++
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-D-GVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-E-EETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred CCcccEEecCCCCceEEEE-e-ccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence 31344544555555553 4 56777766664 3459999964210 22333334444556677777 5667788
Q ss_pred EeCCCcEEEeeCC
Q 015301 249 NGKDQTTKLWDIR 261 (409)
Q Consensus 249 ~~~dg~i~iwd~~ 261 (409)
...|+..++|.+.
T Consensus 380 ~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 380 YIHDAKSQVLAFD 392 (741)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEe
Confidence 8889887777654
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=1.1e-13 Score=114.81 Aligned_cols=234 Identities=9% Similarity=-0.017 Sum_probs=158.9
Q ss_pred cceeeEEecCceeEeecc-ceEEEEeeecCCCceee--cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADS-CHVLSRYLPVNGPWKVD--GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+++++++++|.+..+.. ...+..+-+......+. .+...+.+++++++|.++++...++.|..|+.+.. ... .
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~-~ 92 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKE-Y 92 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEE-E
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEE-E
Confidence 467899999998666543 33344443332222222 34578999999999998888777888999998632 222 1
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
........+..+++.++++++++...++.|..||. +++...... . .....+..+++.++|+.+++
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-~-------------~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-P-------------NKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-S-------------STTCCEEEEEECTTSCEEEE
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-C-------------CCCCCCceEEEcCCCCEEEE
Confidence 12222346899999999988887777889999998 443221110 0 11225789999999987766
Q ss_pred EEecCeEEEEECCCCeeeeE-EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-eeeccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~ 237 (409)
...++.|..||. +++.... +..+...+..+++. ++++++++...++.|..||. .+.... ....+...+.++
T Consensus 158 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-----~g~~~~~~~~~~~~~~~~i 230 (299)
T 2z2n_A 158 ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITT-----SGEITEFKIPTPNARPHAI 230 (299)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-----TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC-CCCCEEEEccCCceEEEECC-----CCcEEEEECCCCCCCceeE
Confidence 656789999998 6665432 33445678899998 77887777767889999995 222211 122344678899
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+++++|+++++...++.|..||..
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETT
T ss_pred EECCCCCEEEeccCCceEEEECCC
Confidence 999999877666577889999973
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=3.6e-14 Score=119.03 Aligned_cols=258 Identities=8% Similarity=-0.004 Sum_probs=167.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
.....+++. +++++++...++.|.+||..+++.+.... . ...+..++++++++.+++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~---~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-G---FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-C---CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-C---CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 446778875 35555666667999999999986655542 1 235889999998854444447899999999887654
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE--ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
....... ..+.......+++ . +..++++. .++.|.++|.++++.+..+... .....++++ ++++
T Consensus 119 ~~i~~g~----------~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~-~dG~ 184 (328)
T 3dsm_A 119 GYIECPD----------MDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMD-KYNK 184 (328)
T ss_dssp EEEECTT----------CCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEEC-TTSE
T ss_pred EEEEcCC----------ccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEc-CCCC
Confidence 3222111 0000112445666 3 44555554 3789999999999988877643 345788898 7888
Q ss_pred EEEEeeCC----------CeEEEecccccccCCceeeeeecc-ccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 199 LIFSGSDD----------SLCKVWDRRCFISKGRANGVLMGH-LEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 199 ~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
+++++..+ +.|.++|.. ..+....+... ......++++|+++.|+++.. .|.+||..+.....
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS
T ss_pred EEEEECCCccCCccccCCceEEEEECC----CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee
Confidence 77776654 789999964 45554444322 236789999999998888765 89999987633210
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecC-CCCEEEEE----eCCCeEEEEEc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYST-AQKYIYTG----SSDNSVYIYDL 342 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~----~~dg~v~i~d~ 342 (409)
. ..+... ......++++| ++.++++. ..++.|.+||.
T Consensus 259 ~--------------------------------~~~~~~------~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 259 R--------------------------------PFLEFR------DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp S--------------------------------CSBCCC------SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred e--------------------------------eeecCC------CCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 0 000000 01234557888 55555665 57899999999
Q ss_pred cCCceEEEeccCCcceeeeEE
Q 015301 343 VSGAQVAKLDFHNAPVRDCCW 363 (409)
Q Consensus 343 ~~~~~~~~~~~~~~~v~~~~~ 363 (409)
. ++.+.++.. ...-..++|
T Consensus 301 ~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 301 Q-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp T-CCEEEEEEE-EESEEEEEE
T ss_pred C-CCEEEEEEe-ccCcceEEE
Confidence 7 988888763 223344444
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.72 E-value=2e-14 Score=120.22 Aligned_cols=248 Identities=8% Similarity=0.064 Sum_probs=162.2
Q ss_pred eEEEEEeCCCCcEEEE-------EecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC-CCeEE
Q 015301 87 TITDTSLSPDQRFLVY-------ASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD-GQELV 158 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~-------~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 158 (409)
.+.+++|++++..+++ ...++.|.+||..+++...... . ...++...+..++++++ +++++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~----------~~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P----------EVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C----------EETTEECCEEEEEECSSSSEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c----------ccCCCCCCCceEEEecCCCcEEE
Confidence 4678999999988877 5778999999987766432211 0 00012235889999999 66444
Q ss_pred EEEecCeEEEEECCCCeeeeE-EcC----CCCCeEEEEEeCCCCcEEEEeeCC---------------CeEEEecccccc
Q 015301 159 AAGSDNFIYVYDLQANKCSLR-IPA----HKSDVNTVCFADETGHLIFSGSDD---------------SLCKVWDRRCFI 218 (409)
Q Consensus 159 ~~~~d~~i~v~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~ 218 (409)
++....|.+||.. ++.... ... ....+.++++. ++++++++...+ +.|..||.
T Consensus 88 -~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 160 (314)
T 1pjx_A 88 -ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT---- 160 (314)
T ss_dssp -EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT----
T ss_pred -EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECC----
Confidence 4445579999988 665432 211 12357899999 788887776654 56777773
Q ss_pred cCCceeeeeeccccceeEEEEc----CCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccccceecc
Q 015301 219 SKGRANGVLMGHLEGITFIDSR----RDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLK 293 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (409)
.+.. ..+..+......++++ |+++.++.+ ..++.|.+||+........
T Consensus 161 -~g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------------- 213 (314)
T 1pjx_A 161 -DGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------------- 213 (314)
T ss_dssp -TSCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-------------------------
T ss_pred -CCCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc-------------------------
Confidence 2222 2233344556889999 999765554 5678999999752100000
Q ss_pred ccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEe
Q 015301 294 HPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLIS 372 (409)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 372 (409)
......+..+.. .....++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+++++ ++++
T Consensus 214 ---~~~~~~~~~~~~-----~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~ 285 (314)
T 1pjx_A 214 ---KKVWGHIPGTHE-----GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp ---EEEEEECCCCSS-----CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred ---ceEEEECCCCCC-----CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence 000111111100 1123457888999888887889999999987887777776777899999999999 4555
Q ss_pred ecCCCeEEEEecCCC
Q 015301 373 SSWDCNIVRWEIPGI 387 (409)
Q Consensus 373 ~~~dg~i~iw~~~~~ 387 (409)
...++.|..|++...
T Consensus 286 ~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 286 EHENNAVWKFEWQRN 300 (314)
T ss_dssp ETTTTEEEEEECSSC
T ss_pred eCCCCeEEEEeCCCC
Confidence 566789999998754
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.72 E-value=1.3e-14 Score=123.78 Aligned_cols=290 Identities=10% Similarity=0.016 Sum_probs=184.4
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEEEEc
Q 015301 50 NDGSFFVAASQE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDV 114 (409)
Q Consensus 50 ~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~w~~ 114 (409)
|+++.+++.... +.|.++|..+.+.+..+..... + .++++||+++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 567766665542 6899999999966665543332 3 799999999998886 3678999999
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEE
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 192 (409)
.+.+............ + ........+.++|||++++++.. ++.|.+.|+.+++.+..+.... . ...
T Consensus 157 ~t~~vv~~I~v~g~~r---~-----~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~ 224 (426)
T 3c75_H 157 VTFLPIADIELPDAPR---F-----LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHI 224 (426)
T ss_dssp TTCCEEEEEEETTCCC---C-----CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEE
T ss_pred CCCcEEEEEECCCccc---c-----ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eee
Confidence 9887644333210000 0 00012456899999999999874 5789999999999988886422 1 223
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceee----eeeccccce-eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANG----VLMGHLEGI-TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.|.....+++.+.||.+.+.+.. .++... .+.....++ ..+.+.+++..++.....+.+.+.|+.......
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred ccCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 32334566667778877777752 222221 111111111 235678888888777888999999986522110
Q ss_pred cccccccccccccccccccccceeccccCccceeeeeccc-ceeeeeEEEEeeeecCCCCEEEEEeC----------CCe
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSS----------DNS 336 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~ 336 (409)
.. ......... ...........+.++|+++.+++... ++.
T Consensus 301 ~~-----------------------------~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 301 RA-----------------------------PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp CC-----------------------------CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE
T ss_pred ee-----------------------------eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE
Confidence 00 000000000 00000000012357888887777642 357
Q ss_pred EEEEEccCCceEEEeccCCcceeeeEEecCcC-eEEeec-CCCeEEEEecCCCccc
Q 015301 337 VYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 337 v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 390 (409)
|.++|..+.+.+.++... .....+.|+||++ +|+++. .++.|.++|+.+.+..
T Consensus 352 VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 352 VVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 999999999999998642 3588999999999 888877 5899999999887654
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.70 E-value=8e-14 Score=116.67 Aligned_cols=259 Identities=15% Similarity=0.141 Sum_probs=163.4
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeeccc----ccceEEEEEeCCCCcEEEEEec--CCE
Q 015301 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSPDQRFLVYASI--CAI 108 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~--dg~ 108 (409)
.++++|||++++++. .++.|.+||..+.+....+....+ .......++|+|||++|.++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999988775 357899999999866655432210 0113456899999999998864 689
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC----
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH---- 183 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~---- 183 (409)
|.++|+.+.+......... . ...+....+.+++.+.||.+.+.++.+ ++.......+
T Consensus 162 VsVID~~t~~vv~tI~v~g-----------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPD-----------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp EEEEETTTTEEEEEEECCS-----------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred EEEEECCCCcEEEEEECCC-----------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 9999999987654332211 1 112222344566667788888888765 4443221111
Q ss_pred CCCeE-EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee----------ccccceeEEEEcCCCCeEEEEeC-
Q 015301 184 KSDVN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----------GHLEGITFIDSRRDGRYFISNGK- 251 (409)
Q Consensus 184 ~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~- 251 (409)
..++. ...|.++++.+++ .+.+|.|.+.|+.. ........+. -..+....++++++++.++....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~--~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSS--GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTT--SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCC--CcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 12222 2456546776555 55589999999741 1111222221 01234455778999888877643
Q ss_pred ---------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 252 ---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 252 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
.++|.+.|+.+. +.+..+... ...+++.++
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~----------------------------------kv~~~i~vg-------~~~~~lavs 339 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTG----------------------------------ERLAKFEMG-------HEIDSINVS 339 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEEC
T ss_pred ccccccCCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcceEEEC
Confidence 257889998873 333333221 235677899
Q ss_pred CCCC-EEEEE-eCCCeEEEEEccCCceEEEeccCCcceeeeEEecC
Q 015301 323 TAQK-YIYTG-SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 323 ~~~~-~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 366 (409)
+|++ +|++. ..++.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 9997 66665 45899999999999999998743 34455666665
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.67 E-value=3.3e-13 Score=112.79 Aligned_cols=251 Identities=13% Similarity=0.131 Sum_probs=157.7
Q ss_pred eecCCCCeEEEEECCCCCEEEE-------EeCCCcEEEEEcCCCeeeeeee-ecccccceEEEEEeCCC-CcEEEEEecC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVA-------ASQESNIKVYNVDKNWKIQKDI-ETKALRWTITDTSLSPD-QRFLVYASIC 106 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t-------~~~d~~i~vw~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~~~~~d 106 (409)
+...-....+++|+++|.++++ ...++.|.+|+..++....... ...++...+.+++++++ ++++++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence 3444556789999999998888 5678899999987764322111 00123346899999999 76555444 4
Q ss_pred CEEEEEEcCCCccccc-cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---------------CeEEEEE
Q 015301 107 AIVNIVDVGSSARESL-ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD---------------NFIYVYD 170 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~v~d 170 (409)
+.|.+||.. ++.... ..... ......+.+++++++|+++++...+ +.|..+|
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSE-----------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTT-----------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEeCC-CCEEEEEeccCC-----------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 578899987 543322 11100 0111247899999999877666544 5678887
Q ss_pred CCCCeeeeEEcCCCCCeEEEEEe----CCCCcEEEEeeCCCeEEEecccccccCCc-----eeeeeeccc-cceeEEEEc
Q 015301 171 LQANKCSLRIPAHKSDVNTVCFA----DETGHLIFSGSDDSLCKVWDRRCFISKGR-----ANGVLMGHL-EGITFIDSR 240 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~-~~v~~~~~~ 240 (409)
.. ++..... .+......++++ |....++++...++.|.+||+.. .+. ....+..+. ..+..++++
T Consensus 160 ~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 160 TD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp TT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred CC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCCCCCCCceEEC
Confidence 65 5543322 233456788887 53333445556788999999641 121 222233333 567889999
Q ss_pred CCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 241 RDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 241 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
++|+++++...++.|.+||..+.. .+..+..+. ....+++
T Consensus 235 ~~G~l~v~~~~~~~i~~~d~~~g~----------------------------------~~~~~~~~~------~~~~~i~ 274 (314)
T 1pjx_A 235 EDNNLLVANWGSSHIEVFGPDGGQ----------------------------------PKMRIRCPF------EKPSNLH 274 (314)
T ss_dssp TTCCEEEEEETTTEEEEECTTCBS----------------------------------CSEEEECSS------SCEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEcCCCCc----------------------------------EeEEEeCCC------CCceeEE
Confidence 999988887788899999987421 122222211 1234556
Q ss_pred ecCCCCEEE-EEeCCCeEEEEEccC
Q 015301 321 YSTAQKYIY-TGSSDNSVYIYDLVS 344 (409)
Q Consensus 321 ~s~~~~~l~-~~~~dg~v~i~d~~~ 344 (409)
++|+++.|+ +...++.|..|++..
T Consensus 275 ~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 275 FKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 789999554 445568899999864
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.66 E-value=2e-12 Score=109.81 Aligned_cols=242 Identities=10% Similarity=-0.034 Sum_probs=152.9
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeec-ccc---cceEEEEEeCCCCcEEEEEec--CCE
Q 015301 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIET-KAL---RWTITDTSLSPDQRFLVYASI--CAI 108 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~~~~s~~~~~l~~~~~--dg~ 108 (409)
.++|||||++|+++. .++.|.+||..+.+.+...... ... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 999999999998885 3678999999877555443221 000 123568999999999998874 578
Q ss_pred EEEEEcCCCccccc-cceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeEEc-----
Q 015301 109 VNIVDVGSSARESL-ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLRIP----- 181 (409)
Q Consensus 109 i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~----- 181 (409)
|.++| .+++.... .... .++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 150 v~viD-~t~~~~~~~i~~~-------------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-------------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-------------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 99999 88765322 1110 123444544 34556667899999999 777663322
Q ss_pred CCCCCe-EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----------cccceeEEEEcCCCCeEEEEe
Q 015301 182 AHKSDV-NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 182 ~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~ 250 (409)
....++ ....+. +++..++..+..+.+.+.|+... .......+.. .......+.++|+++.+++..
T Consensus 209 ~~~~p~~~~~~~~-~~~~~~~~~~~~~~v~vid~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 209 TAAQNLLTQPAQA-NKSGRIVWPVYSGKILQADISAA--GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred cCCcceeecceeE-ecCCEEEEEcCCceEEEEeccCC--cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEe
Confidence 111221 234555 34444444446789999996411 1111111110 122344477899988877764
Q ss_pred C----------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeee
Q 015301 251 K----------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPE 320 (409)
Q Consensus 251 ~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
. ++.|.++|+.+. +.+..+.... ..+.+.
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~----------------------------------~vv~~i~~g~-------~p~~i~ 324 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVG----------------------------------QTSSQISLGH-------DVDAIS 324 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCC----------------------------------EEEEEEECCC-------CcCeEE
Confidence 3 357999998773 2233332211 235668
Q ss_pred ecCCCC-EEEEEe-CCCeEEEEEccCCceEEEe
Q 015301 321 YSTAQK-YIYTGS-SDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 321 ~s~~~~-~l~~~~-~dg~v~i~d~~~~~~~~~~ 351 (409)
++|||+ +++++. .++.|.++|+.+++.+.++
T Consensus 325 ~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999999 777777 4899999999999998884
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.66 E-value=1.8e-13 Score=117.97 Aligned_cols=254 Identities=12% Similarity=0.092 Sum_probs=158.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC--EEEEEEcCCCc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA--IVNIVDVGSSA 118 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~~w~~~~~~ 118 (409)
.....++|+++|+++++...++.|++||.+++... ....... ... ++|+|+++.|+++..++ .|.+++...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-~~~~~~~---~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-TVHPGFK---GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-EEEETCC---BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-EeeccCC---CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 46889999999998888777899999999877433 3222221 233 89999999998888765 78888876543
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeE----EcCCCCCe-E-EEEE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLR----IPAHKSDV-N-TVCF 192 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~v-~-~~~~ 192 (409)
...... . ........+.+++++|++..|+++..++.|+.||..++..... ..++...- . .++|
T Consensus 206 ~~~~~g--~---------~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 206 APTRIG--Q---------LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp CEEEEE--E---------CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred eeEEee--e---------ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 211110 0 0000122477899999555566677788999999987754322 22222222 3 9999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc---------------ccceeEEEEcCCCCeEEEEe-CCCcEE
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH---------------LEGITFIDSRRDGRYFISNG-KDQTTK 256 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~ 256 (409)
+|.++.++++-..++.|+.|+.. +. ...+.++ -.....++++++|+++++-. .++.|+
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~-----g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPD-----GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTT-----CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEecC-----CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 94467777777788999999953 22 2222222 13478899999999777777 788999
Q ss_pred EeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCe
Q 015301 257 LWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNS 336 (409)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 336 (409)
.|++.+............ . +. ..+ ............+++++++.++++-..+++
T Consensus 349 ~~~~~~G~v~~~~g~~~~-~--------------------g~----~~g-~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 349 KLDILDGYVSTVAGQVDV-A--------------------SQ----IDG-TPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp EEETTTTEEEEEEECTTC-B--------------------SC----CCB-STTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred EEECCCCEEEEEeCCCCC-C--------------------Cc----CCC-ChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 999755321110000000 0 00 000 000000112345678888888888888888
Q ss_pred EEEEEc
Q 015301 337 VYIYDL 342 (409)
Q Consensus 337 v~i~d~ 342 (409)
|+.+++
T Consensus 403 Ir~i~~ 408 (409)
T 3hrp_A 403 IRKYAV 408 (409)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888765
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.65 E-value=5.3e-13 Score=110.33 Aligned_cols=228 Identities=9% Similarity=0.065 Sum_probs=147.5
Q ss_pred eEEEEEeCCCC-cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQ-RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
-..+..|+|++ ..+++...++.|..||..++..... .. ...+.+++++++|++++ +. +..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~----------------~~~~~~i~~~~dG~l~v-~~-~~~ 74 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM----------------DAPVSSVALRQSGGYVA-TI-GTK 74 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC----------------SSCEEEEEEBTTSSEEE-EE-TTE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC----------------CCceEEEEECCCCCEEE-EE-CCe
Confidence 35678899965 4555666788999999987654211 10 12588999999999544 44 678
Q ss_pred EEEEECCCCeeeeEEcC----CCCCeEEEEEeCCCCcEEEEeeCC---------CeEEEecccccccCCceeeeeecccc
Q 015301 166 IYVYDLQANKCSLRIPA----HKSDVNTVCFADETGHLIFSGSDD---------SLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
|.+||.++++....... ....+.++++. ++++++++.... ..-.+|.+. ..+. ...+..+..
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d---~~g~-~~~~~~~~~ 149 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLF---PDHH-VKKYFDQVD 149 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEEC---TTSC-EEEEEEEES
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEE---CCCC-EEEEeeccc
Confidence 99999988775433321 12347889998 788876654321 223444432 1222 222333445
Q ss_pred ceeEEEEcCCCCeEEE-EeCCCcEEEeeCC--CCcccccccccccccccccccccccccceeccccCccceeeeecccce
Q 015301 233 GITFIDSRRDGRYFIS-NGKDQTTKLWDIR--KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVL 309 (409)
Q Consensus 233 ~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (409)
....++|+|+++.|+. .+.++.|.+|++. +..... .+.+..+....
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-----------------------------~~~~~~~~~~~-- 198 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-----------------------------RRSVYKLEKEE-- 198 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-----------------------------EEEEEECCGGG--
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-----------------------------cEEEEECCCCC--
Confidence 5688999999987654 4557889999874 211000 00111111111
Q ss_pred eeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEEee
Q 015301 310 RTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLISS 373 (409)
Q Consensus 310 ~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~ 373 (409)
.....++++++|++.++....+.|..||..+++.+..+..+...+++++|. |+++.|+.+
T Consensus 199 ----~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 199 ----QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp ----CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred ----CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 122345688899888888888899999999999999998877889999998 888855443
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.65 E-value=2.4e-13 Score=117.21 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=159.4
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC--
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-- 164 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-- 164 (409)
.+..++|+++++++++...++.|++||..++......... . ... ++|+++++.|+++..++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------------~-~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------------K-GGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------------C-BCB-CEECTTSSEEEEEBSSTTC
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------------C-CCc-eeEecCCCcEEEEecCCCc
Confidence 5889999999997777777899999999876653322110 0 233 89999999998888765
Q ss_pred eEEEEECCCCeeeeEE----cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee----eeccccce--
Q 015301 165 FIYVYDLQANKCSLRI----PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV----LMGHLEGI-- 234 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~v-- 234 (409)
.|.+++...+.....+ ......+.+++++|.++.+++ +..++.|+.||.. ....... ..++...-
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~----~~~~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVK----TQEVTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETT----TCCEEEEEECCCCSCCCCSSC
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECC----CCCEEEEecccccCCCCCCcc
Confidence 8999998766544344 224567789999933555444 6778899999964 2222111 11222222
Q ss_pred eEEEEcCC-CCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeee
Q 015301 235 TFIDSRRD-GRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLI 313 (409)
Q Consensus 235 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (409)
..++|+|+ +.++++-..++.|+.|+...... ...... .. .+ ...+ .......
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~~~g~~-~~--------------------~g----~~dg-~~~~~~~ 322 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-WFCGSA-TQ--------------------KT----VQDG-LREEALF 322 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECT-TC--------------------CS----CBCE-EGGGCBC
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-EEEeCC-CC--------------------CC----cCCC-cccccEe
Confidence 38999995 55566666678899998764200 000000 00 00 0000 0000001
Q ss_pred EEEEeeeecCCCCEEEEEe-CCCeEEEEEccCCceEEEeccC---------------CcceeeeEEecCcCeEEeecCCC
Q 015301 314 RCYFSPEYSTAQKYIYTGS-SDNSVYIYDLVSGAQVAKLDFH---------------NAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 314 ~~~~~~~~s~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
.....++++++|+++++-+ .++.|+.|++.+++. .++.++ -.....+++++++.++++-..++
T Consensus 323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~ 401 (409)
T 3hrp_A 323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK 401 (409)
T ss_dssp SSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC
T ss_pred CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC
Confidence 1234567889999888877 889999999877764 444333 13578899999988888888889
Q ss_pred eEEEEecC
Q 015301 378 NIVRWEIP 385 (409)
Q Consensus 378 ~i~iw~~~ 385 (409)
+|+.++++
T Consensus 402 ~Ir~i~~e 409 (409)
T 3hrp_A 402 AIRKYAVE 409 (409)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99988763
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=7.2e-12 Score=103.85 Aligned_cols=234 Identities=8% Similarity=-0.035 Sum_probs=156.4
Q ss_pred cceeeEEecCceeEeecc-ceEEEEeeecCCCce--eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee
Q 015301 3 VGREVNYSGRGRFSAADS-CHVLSRYLPVNGPWK--VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI 79 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~~--l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~ 79 (409)
.+++++++++|....+.. ...+..+-+...... +..+...+.+++++++|+++++...++.|..||.. +.. ...
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~- 97 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEY- 97 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE-
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEe-
Confidence 567889999997655542 333444433322111 22344679999999999988877667889999987 432 221
Q ss_pred ecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE
Q 015301 80 ETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA 159 (409)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 159 (409)
........+.++++.++++++++...++.|..++.. ++..... .. .....+..+++.++++..++
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~-------------~~~~~~~~i~~d~~g~l~v~ 162 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LP-------------NKGSYPAFITLGSDNALWFT 162 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE-CS-------------STTCCEEEEEECTTSSEEEE
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc-CC-------------CCCCCceeEEECCCCCEEEE
Confidence 222222468999999999888877778899999886 4322110 00 01224789999999986655
Q ss_pred EEecCeEEEEECCCCeeeeE-EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-eeeccccceeEE
Q 015301 160 AGSDNFIYVYDLQANKCSLR-IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMGHLEGITFI 237 (409)
Q Consensus 160 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~ 237 (409)
...++.|..+|. +++.... ...+...+..+++. ++++++++....+.|.+||.. +.... ....+...+.++
T Consensus 163 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i 235 (300)
T 2qc5_A 163 ENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITTT-----GEISEYDIPTPNARPHAI 235 (300)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEE
T ss_pred ecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcCC-----CcEEEEECCCCCCCceEE
Confidence 555788999998 5554432 23345678999998 688877777677889999952 22222 122345668899
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
+++++|+++++...++.|..||..
T Consensus 236 ~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 236 TAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EECSTTCEEEEETTTTEEEEECTT
T ss_pred EECCCCCEEEeccCCCeEEEECCC
Confidence 999999877766667889999873
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.62 E-value=1.5e-13 Score=127.18 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=131.4
Q ss_pred cCCCCeEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC-----
Q 015301 38 GMNSRVYTSQFSNDGSFFVAA-----SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA----- 107 (409)
Q Consensus 38 ~h~~~v~~~~~s~~~~~l~t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----- 107 (409)
+|...+..++|||||++||-+ +.+..|++||+++++.+.... .. .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KD--VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EE--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CC--ceeccEEEe-CCCEEEEEEecCccccc
Confidence 466679999999999999843 333579999999986543311 11 012567899 999999888774
Q ss_pred --------EEEEEEcCCCccccccceeceeeeeeeecCCCC-cceeeEEEEEcCCCCeEEEEEe----cCeEEEEECCCC
Q 015301 108 --------IVNIVDVGSSARESLANVTEIHKGLDFSADGDE-DEFGIFSVKFSTDGQELVAAGS----DNFIYVYDLQAN 174 (409)
Q Consensus 108 --------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~ 174 (409)
.|++|++.+........... .. +......+.|+|||++|+.... ...|+++|+.++
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 49999988765422211111 01 1223678899999998876554 248999999776
Q ss_pred e-eeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC---CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 175 K-CSLRIPAHKSDVNTVCFADETGHLIFSGSDD---SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 175 ~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
. ....+..+....... +++.++.+++....+ +.|..+|+... .......+..|...+. .|+++++.|+...
T Consensus 270 ~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 270 NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP--GPAHWRDLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC--CGGGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC--CccccEEEecCCCCEE--EEEEECCEEEEEE
Confidence 3 344555565555555 553445555555443 57888887521 1111234555655554 8889998887766
Q ss_pred CCC---cEEEeeCCC
Q 015301 251 KDQ---TTKLWDIRK 262 (409)
Q Consensus 251 ~dg---~i~iwd~~~ 262 (409)
.++ .|.+||+..
T Consensus 345 ~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 345 MVDATARVEQFDYEG 359 (693)
T ss_dssp EETTEEEEEEECTTS
T ss_pred EECCeeEEEEEECCC
Confidence 544 688888764
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.60 E-value=3.1e-13 Score=114.18 Aligned_cols=284 Identities=6% Similarity=-0.054 Sum_probs=170.1
Q ss_pred CCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeeeeeee----ecccccceEEEEEeCCCCcEEEEEec-----CCEE
Q 015301 41 SRVYTSQFSNDGSFFVAAS--QESNIKVYNVDKNWKIQKDI----ETKALRWTITDTSLSPDQRFLVYASI-----CAIV 109 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i 109 (409)
..+..++++|+|+++++.. .++.++||.++++ .+.... ....+-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343566666544 222111 11123457999999999887665543 5789
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE-E---ecCeEEEEECCCCeeeeEEcCCCC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-G---SDNFIYVYDLQANKCSLRIPAHKS 185 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~d~~i~v~d~~~~~~~~~~~~~~~ 185 (409)
.+||+.+++......... ....+...+..+++++++..++.+ . .++.|.+||+.+++....+..|..
T Consensus 96 ~~~d~~tg~~~~~~~~~~---------~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPP---------PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp EEEETTTTEEEEEEECCT---------TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred EEEECCCCeEEEEEECCh---------hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 999998876432222111 001112246889999865455444 3 578999999998887666655432
Q ss_pred CeE-EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-cEEEeeCCCC
Q 015301 186 DVN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-TTKLWDIRKM 263 (409)
Q Consensus 186 ~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~ 263 (409)
... ...+. .++..+.+.+.+|.++.|. ..+..++++|+++.|+++..++ .+..++....
T Consensus 167 ~~~~~~~~~-~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~ 227 (343)
T 2qe8_A 167 IAPEDIDLV-IDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL 227 (343)
T ss_dssp TSCCSCCCE-ETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred cccccccee-ECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence 111 13344 4566666667777766554 1356799999999888887766 4444432210
Q ss_pred cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 264 SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
........ .+ ...+.. .++. .....++++++|.++++...++.|.+||..
T Consensus 228 ~~~~~~~~-------------------~~----~~~~~~-~g~~------g~pdgia~d~~G~l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 228 SNLQLTDA-------------------EL----GSKIER-YSEK------PICDGISIDKDHNIYVGDLAHSAIGVITSA 277 (343)
T ss_dssp TCTTCCHH-------------------HH----HTTCEE-EEEC------CSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred cCCCCChh-------------------hh----hcceEe-cccC------CCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence 00000000 00 000000 0110 012245688899999999899999999985
Q ss_pred CCceEEEecc-CCcceeeeEEecCcCeEEeecCCCeEEEEe
Q 015301 344 SGAQVAKLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 344 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
+++....... +...+.+++|.+++.++++.+..+.+.+|.
T Consensus 278 ~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 278 DRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 6654333322 244688999999988777776555554443
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.59 E-value=6.2e-14 Score=117.87 Aligned_cols=175 Identities=14% Similarity=0.067 Sum_probs=127.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--------eeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWK--------IQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
+++.+++++...++++|+.++ +++|+++.... .... ....+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 699999999999999999885 77799754320 1110 1122445 999999 89999998 889999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEe
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFA 193 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 193 (409)
+.+........ .+..++.++.+.+.. +++++.||.|.+||+.++.... +...|++++|+
T Consensus 113 v~sl~~~~~~~---------------~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS 171 (388)
T 1xip_A 113 LEELSEFRTVT---------------SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT 171 (388)
T ss_dssp SSSTTCEEEEE---------------ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC
T ss_pred chhhhccCccc---------------eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEc
Confidence 98765322111 112246777776543 8888999999999999877643 34689999999
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCce--eeee------e---ccccceeEEEEcCCCCeEEEEe
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRA--NGVL------M---GHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
++| ++.|..||++++|+.. .... ...+ . +|...|.++.|.+++.++++-.
T Consensus 172 -pkG--~~vg~~dg~i~~~~~~----~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 172 -NSQ--LAVLLKDRSFQSFAWR----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp -SSE--EEEEETTSCEEEEEEE----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred -CCc--eEEEEcCCcEEEEcCC----CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 677 6789999999999864 3332 2233 2 3678899999999998887643
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.57 E-value=2.8e-13 Score=113.87 Aligned_cols=169 Identities=8% Similarity=0.065 Sum_probs=122.6
Q ss_pred ceeeEEecCceeEeeccce--EEEEeeecC----------CCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 015301 4 GREVNYSGRGRFSAADSCH--VLSRYLPVN----------GPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDK 71 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~--~~~~~~~~~----------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~ 71 (409)
...|++|++...+++++.. .++...... .+.....+.+ |+.++| |+++|+++ .++.|++||+.+
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence 4568999988766665533 233221111 2223445777 999999 99999999 889999999987
Q ss_pred CeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc
Q 015301 72 NWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS 151 (409)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (409)
....... ..+...+.++.+.+.. +++++.||.|.+||+.++.... . ...|.+++|+
T Consensus 116 l~~~~~~---~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~----------------~~~Vs~v~WS 171 (388)
T 1xip_A 116 LSEFRTV---TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L----------------AQNVTSFDVT 171 (388)
T ss_dssp TTCEEEE---EECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E----------------EESEEEEEEC
T ss_pred hhccCcc---ceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c----------------cCCceEEEEc
Confidence 6433322 2334468888877653 8888999999999998776432 1 1159999999
Q ss_pred CCCCeEEEEEecCeEEEEECCCCee--eeEE------c---CCCCCeEEEEEeCCCCcEEEEe
Q 015301 152 TDGQELVAAGSDNFIYVYDLQANKC--SLRI------P---AHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 152 ~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
|+| ++.|..||.+++|+...++. ..++ . +|...|.++.|. +++.++++-
T Consensus 172 pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl-~~~~flv~y 231 (388)
T 1xip_A 172 NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL-SPQDFLAVF 231 (388)
T ss_dssp SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES-SSSEEEEEE
T ss_pred CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe-cCCeEEEEE
Confidence 999 67888999999999887775 5556 2 378899999999 788877763
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.56 E-value=3.4e-12 Score=105.93 Aligned_cols=227 Identities=10% Similarity=-0.017 Sum_probs=145.3
Q ss_pred ceeeEEecCcee-Eee-ccceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee-
Q 015301 4 GREVNYSGRGRF-SAA-DSCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE- 80 (409)
Q Consensus 4 ~~~~~~s~dg~~-~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~- 80 (409)
.+..+|+|+|+. +.+ .....+..+.+......+..+...+..++++++|+++++...++.|.+|+.+ +. ......
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~~~~ 124 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLLVGR 124 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEEEec
Confidence 356889999983 333 2233444444444445566677889999999999977766666789999986 32 222211
Q ss_pred ccc-ccceEEEEEeCCCCcEEEE----Eec-------------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcc
Q 015301 81 TKA-LRWTITDTSLSPDQRFLVY----ASI-------------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDE 142 (409)
Q Consensus 81 ~~~-~~~~v~~~~~s~~~~~l~~----~~~-------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (409)
... ....+..++++|+|+++++ |.. .+.|..+|..+++..... . .
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~-~------------- 187 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---D-L------------- 187 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---E-E-------------
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---c-C-------------
Confidence 111 1124678999999998886 332 256777777655543221 0 0
Q ss_pred eeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeee--eEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 143 FGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCS--LRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 143 ~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
.....++|+|+++.|+++... +.|.+|++..+... ..+ ......+..+++. +++++.+ ++.+ .|.+|+
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~lwv-~~~~-gv~~~~ 264 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGWLWS-SSGT-GVCVFD 264 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSCEEE-CCSS-EEEEEC
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-CCCCEEE-ecCC-cEEEEC
Confidence 036789999999988877665 68999998765411 111 2223445678888 7888544 4444 499999
Q ss_pred ccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEee
Q 015301 214 RRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWD 259 (409)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 259 (409)
. .++....+..+. .+..++|.++++.|+.++.++ +..++
T Consensus 265 ~-----~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 265 S-----DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp T-----TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred C-----CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 4 455555555444 588999999998888877764 44333
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.56 E-value=3.1e-11 Score=99.76 Aligned_cols=224 Identities=9% Similarity=0.061 Sum_probs=144.8
Q ss_pred ceeeEEecCc-eeEeec-cceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRG-RFSAAD-SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
.+...|++++ .++.++ ....+..+-+.........+...+.+++++|+|+++++. ++.|.+||.+++... .....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~-~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAV-VLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEE-EEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEE-EEEec
Confidence 4678899854 444433 233455554444444444556789999999999965543 567999999877432 22221
Q ss_pred c--cccceEEEEEeCCCCcEEEEEecC---------CEEEEEEcCCC-ccccccceeceeeeeeeecCCCCcceeeEEEE
Q 015301 82 K--ALRWTITDTSLSPDQRFLVYASIC---------AIVNIVDVGSS-ARESLANVTEIHKGLDFSADGDEDEFGIFSVK 149 (409)
Q Consensus 82 ~--~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (409)
. .....+..++++|+|+++++.... ..-.+|.+... +... .... ......++
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~-------------~~~pngi~ 155 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQ-------------VDISNGLD 155 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEE-------------ESBEEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Eeec-------------cccccceE
Confidence 1 123468999999999977654321 23345555432 1111 1100 11367899
Q ss_pred EcCCCCeEEEEE-ecCeEEEEEC--CCCeee-----eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 150 FSTDGQELVAAG-SDNFIYVYDL--QANKCS-----LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 150 ~~~~~~~l~~~~-~d~~i~v~d~--~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
|+|+++.|+.+. .++.|.+|++ .++... ..+..+...+..+++. +++++.++....+.|..||.. ++
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~----tG 230 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPV----TG 230 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTT----TC
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCC----Cc
Confidence 999998776554 4789999987 455432 2223334567899998 788888887778899999953 57
Q ss_pred ceeeeeeccccceeEEEEc-CCCCeEEEEeC
Q 015301 222 RANGVLMGHLEGITFIDSR-RDGRYFISNGK 251 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 251 (409)
+.+..+..+...+++++|. |+++.|+..+.
T Consensus 231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred eEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 7777777776789999998 88877665554
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.56 E-value=1e-12 Score=110.37 Aligned_cols=270 Identities=7% Similarity=-0.108 Sum_probs=164.9
Q ss_pred cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe----------cCCEEEEEEcCCCccccccceeceeeee
Q 015301 63 NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS----------ICAIVNIVDVGSSARESLANVTEIHKGL 132 (409)
Q Consensus 63 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 132 (409)
+|.++|.++++.+........ + .+.++||+++++++. .++.|.+||..+.+............
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~---P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-- 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL---S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-- 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT---C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred eEEEEECCCCeEEEEEeCCCC---C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence 788999999977666543332 4 699999999999886 36889999999987654433220000
Q ss_pred eeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEE--EECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCe
Q 015301 133 DFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYV--YDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSL 208 (409)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 208 (409)
+. .......++++|||++++++.. +..+.+ +|..+ +..+.... . ..+.|.....+++.+.||.
T Consensus 120 -~~-----~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 120 -FS-----VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp -CC-----BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTS
T ss_pred -cc-----cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCC
Confidence 00 0012556899999999999875 457888 99877 44443211 1 1223334455666778888
Q ss_pred EEEeccccccc-CCceee----eeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccc
Q 015301 209 CKVWDRRCFIS-KGRANG----VLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWM 283 (409)
Q Consensus 209 i~iwd~~~~~~-~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
+.+.|+..... .++... .+.-...+. . .+++..++..+. +.+.+.|+.......
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v---------------- 245 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATM---------------- 245 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEE----------------
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceE----------------
Confidence 88888641000 011110 111112333 3 556666666666 889999986421100
Q ss_pred cccccceeccccCccceeeeeccc----ceeeeeEEEEeeeecCCCCEEEEEeC---------CCeEEEEEccCCceEEE
Q 015301 284 EYPSYARRLKHPHDQSLATYKGHS----VLRTLIRCYFSPEYSTAQKYIYTGSS---------DNSVYIYDLVSGAQVAK 350 (409)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~ 350 (409)
+..+.... .............++|+++.++++.. ++.+.++|+.+++.+.+
T Consensus 246 ----------------~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~ 309 (368)
T 1mda_H 246 ----------------KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp ----------------ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred ----------------EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence 00000000 00000000001358889988887643 23567999999999998
Q ss_pred eccCCcceeeeEEecCcC-eEEeec-CCCeEEEEecCCCccc
Q 015301 351 LDFHNAPVRDCCWHPIYP-MLISSS-WDCNIVRWEIPGIGEA 390 (409)
Q Consensus 351 ~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~ 390 (409)
+.... ....++|+||++ .+++.. .++.|.++|+.+.+..
T Consensus 310 i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 310 ISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 87543 688999999998 566666 5999999999887643
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.54 E-value=6.3e-12 Score=107.27 Aligned_cols=244 Identities=13% Similarity=0.113 Sum_probs=153.5
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeec-cc---ccceEEEEEeCCCCcEEEEEec--CCE
Q 015301 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIET-KA---LRWTITDTSLSPDQRFLVYASI--CAI 108 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l~~~~~--dg~ 108 (409)
.++++|||++|+++. .++.|.++|..+.+.+..+... .. .......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999988775 3678999999998665554321 00 0112456899999999999874 578
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCC-CeEEEEEecCeEEEEECCCCeeeeE----EcCC
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDG-QELVAAGSDNFIYVYDLQANKCSLR----IPAH 183 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~ 183 (409)
|.+.|+.+.+......... . ....|++ ..+++.+.||.+.+.+..+++.... +...
T Consensus 202 VsVID~~t~kvv~~I~v~g-----------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~ 262 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD-----------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE 262 (426)
T ss_dssp EEEEETTTTEEEEEEECCS-----------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred EEEEECCCCeEEEEEEcCC-----------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence 9999999987644332211 1 1222322 3445555667666666655544321 1111
Q ss_pred CCCe-EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee----------ccccceeEEEEcCCCCeEEEEeC-
Q 015301 184 KSDV-NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----------GHLEGITFIDSRRDGRYFISNGK- 251 (409)
Q Consensus 184 ~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~- 251 (409)
..++ ..+.+. +++..++..+..+.+.+.|+... .......+. ........++++|+++.+++...
T Consensus 263 ~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~--~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~ 339 (426)
T 3c75_H 263 DELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAE--GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQ 339 (426)
T ss_dssp TSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSS--CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEE
T ss_pred CCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCC--ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecc
Confidence 2221 234567 66666666677899999996411 100111110 01122234689999887776642
Q ss_pred ---------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec
Q 015301 252 ---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS 322 (409)
Q Consensus 252 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 322 (409)
++.|.+.|+.+. +.+..+... ...+.+.++
T Consensus 340 ~~~gthk~~s~~VsVID~~T~----------------------------------kvv~~I~vg-------~~P~gia~s 378 (426)
T 3c75_H 340 RDEWKHKAASRFVVVLNAETG----------------------------------ERINKIELG-------HEIDSINVS 378 (426)
T ss_dssp CCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEEC
T ss_pred cccccccCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcCeEEEc
Confidence 357999999883 333333221 234667899
Q ss_pred CCCC-EEEEEe-CCCeEEEEEccCCceEEEe
Q 015301 323 TAQK-YIYTGS-SDNSVYIYDLVSGAQVAKL 351 (409)
Q Consensus 323 ~~~~-~l~~~~-~dg~v~i~d~~~~~~~~~~ 351 (409)
|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 379 pDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 379 QDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999 888887 5899999999999999887
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.54 E-value=2.9e-11 Score=101.20 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=141.7
Q ss_pred EEEEEeCCCCc-EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 88 ITDTSLSPDQR-FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 88 v~~~~~s~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
..+..|+|++. .+++...++.|..||..+++.... .. ...+.+++++++|+++++. +..|
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~----------------~~~v~~i~~~~dg~l~v~~--~~gl 111 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-AL----------------PFMGSALAKISDSKQLIAS--DDGL 111 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC----------------SSCEEEEEEEETTEEEEEE--TTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EC----------------CCcceEEEEeCCCeEEEEE--CCCE
Confidence 45678999754 555666788999999987653211 00 1148899999999876654 3459
Q ss_pred EEEECCCCeeeeEEcC----CCCCeEEEEEeCCCCcEEEEeeCC----CeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 167 YVYDLQANKCSLRIPA----HKSDVNTVCFADETGHLIFSGSDD----SLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
.+||..+++....... ....+.+++++ ++++++++...+ +...+|.+. .+.. ..+..+......++
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~----~g~~-~~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA----KGKV-TKLFADISIPNSIC 185 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE----TTEE-EEEEEEESSEEEEE
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe----CCcE-EEeeCCCcccCCeE
Confidence 9999988875433221 12357899999 788876654321 234444432 2222 22223334567899
Q ss_pred EcCCCCeEEEE-eCCCcEEEeeCC--CC-cccccccccccccccccccccccccceeccccCccceeeeecccceeeeeE
Q 015301 239 SRRDGRYFISN-GKDQTTKLWDIR--KM-SSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIR 314 (409)
Q Consensus 239 ~~~~~~~l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (409)
|+|+++.++.+ ..++.|.+||+. +. .... ...+..+.... .
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------------------------~~~~~~~~~~~------~ 230 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------------------------AEVFIDSTGIK------G 230 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------------------------CEEEEECTTSS------S
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----------------------------ceEEEECCCCC------C
Confidence 99999876555 456889999975 21 1000 00011111000 0
Q ss_pred EEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe-cCcCeEEee
Q 015301 315 CYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH-PIYPMLISS 373 (409)
Q Consensus 315 ~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~ 373 (409)
....+.++++|.+.++...++.|.+||. +++.+..+..+...+++++|+ ++++.|+.+
T Consensus 231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 231 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 1124567888988877777789999998 677778887777789999998 887755443
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.54 E-value=1.2e-11 Score=102.73 Aligned_cols=208 Identities=8% Similarity=-0.021 Sum_probs=132.5
Q ss_pred CCCceeecCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 31 NGPWKVDGMNSRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 31 ~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
.....+...........|+|+|+ ++++...++.|..|+.. +. ...... ....+..++++++|+++++...++.|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~---~~~~~~gl~~d~dG~l~v~~~~~~~v 109 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD---ATAFTNGNAVDAQQRLVHCEHGRRAI 109 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE---SCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC---CCCccceeeECCCCCEEEEECCCCEE
Confidence 34456666777788999999998 56677778899999984 32 222222 23368899999999977766666889
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEE----EEe-------------cCeEEEEECC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVA----AGS-------------DNFIYVYDLQ 172 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~v~d~~ 172 (409)
.+|+.. ++......... . .....+..+++.++|+..++ |.. .+.|..+|..
T Consensus 110 ~~~~~~-g~~~~~~~~~~---~--------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 110 TRSDAD-GQAHLLVGRYA---G--------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEECTT-SCEEEEECEET---T--------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCC-CCEEEEEeccC---C--------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 999975 43222111100 0 00123678999999987775 321 2568888887
Q ss_pred CCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC------CeEEEecccccccCCceeeee-eccccceeEEEEcCCCCe
Q 015301 173 ANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD------SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRY 245 (409)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 245 (409)
+++..... .......++|+ ++++.|+.+... +.|.+|++.... ......+ .........++++++|++
T Consensus 178 ~g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SCCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCE
Confidence 77654433 34567889999 888877776654 789999974210 0000111 112334567889999984
Q ss_pred EEEEeCCCcEEEeeCCC
Q 015301 246 FISNGKDQTTKLWDIRK 262 (409)
Q Consensus 246 l~~~~~dg~i~iwd~~~ 262 (409)
.++..+| |.+|+...
T Consensus 253 -wv~~~~g-v~~~~~~g 267 (305)
T 3dr2_A 253 -WSSSGTG-VCVFDSDG 267 (305)
T ss_dssp -EECCSSE-EEEECTTS
T ss_pred -EEecCCc-EEEECCCC
Confidence 4444454 99998743
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.53 E-value=2.3e-12 Score=119.36 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=152.2
Q ss_pred ccceEEEEEeCCCCcEEEEEe-----cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 84 LRWTITDTSLSPDQRFLVYAS-----ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~-----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
+...+..++|||||++||.+. ....|++||+.+++.... ... . .....++|+ |++.|+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~----~-----------~k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK----D-----------VKFSGISWL-GNEGFF 189 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE----E-----------EESCCCEEE-TTTEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC----C-----------ceeccEEEe-CCCEEE
Confidence 344788899999999998653 225799999999874322 110 0 013567899 999999
Q ss_pred EEEecC-------------eEEEEECCCCee----eeEEcC-CCCCeEEEEEeCCCCcEEEEeeC----CCeEEEecccc
Q 015301 159 AAGSDN-------------FIYVYDLQANKC----SLRIPA-HKSDVNTVCFADETGHLIFSGSD----DSLCKVWDRRC 216 (409)
Q Consensus 159 ~~~~d~-------------~i~v~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~ 216 (409)
.++.+. .|++|++.++.. +..... |......+.|+ +++++|+.... +..|.++|+..
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCC
Confidence 888774 499999987643 222233 44567889999 78887755432 35899999751
Q ss_pred cccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-C---CcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 217 FISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-D---QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
.......+..+....... +++++..|+..+. + +.|..+|+.+...
T Consensus 269 ---~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--------------------------- 317 (693)
T 3iuj_A 269 ---ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--------------------------- 317 (693)
T ss_dssp ---TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG---------------------------
T ss_pred ---CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------------------------
Confidence 112344455555555554 5666666554443 3 5788888876321
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-CC--eEEEEEccCCceEEEec-cCCcceeeeEEecCcC
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS-DN--SVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYP 368 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~ 368 (409)
.....+..+.... . .++++++.|+.... ++ .|++|++..+ ....+. ...+.+..+.++++++
T Consensus 318 -----~~~~~l~~~~~~~------~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 318 -----AHWRDLIPERQQV------L--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp -----GGCEEEECCCSSC------E--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCS
T ss_pred -----cccEEEecCCCCE------E--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCC
Confidence 0112222222111 1 46667887776655 43 6899998744 444443 2445678888898888
Q ss_pred eEEeecCC----CeEEEEecCCCc
Q 015301 369 MLISSSWD----CNIVRWEIPGIG 388 (409)
Q Consensus 369 ~l~s~~~d----g~i~iw~~~~~~ 388 (409)
.|+....+ +.|+.||+.+++
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEecCCCCCCEEEEEECCCCe
Confidence 65544333 889999987654
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=1.2e-10 Score=97.39 Aligned_cols=222 Identities=11% Similarity=0.010 Sum_probs=139.0
Q ss_pred ceeeEEecCc-eeEeec-cceEEEEeeecCCCceeecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec
Q 015301 4 GREVNYSGRG-RFSAAD-SCHVLSRYLPVNGPWKVDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET 81 (409)
Q Consensus 4 ~~~~~~s~dg-~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~ 81 (409)
....+|+|++ .++..+ ....+..+-+.........+...+.+++|+|+|+++++. .+ .|.+||.+++.. ......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~-~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-TLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-EEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE-EEEeeC
Confidence 3568899974 433332 223344443333322222345689999999999877765 44 499999887743 222221
Q ss_pred c--cccceEEEEEeCCCCcEEEEEec------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC
Q 015301 82 K--ALRWTITDTSLSPDQRFLVYASI------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD 153 (409)
Q Consensus 82 ~--~~~~~v~~~~~s~~~~~l~~~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (409)
. .....+.+++++|+|+++++... .+.|..++ +++..... .. ......++|+|+
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~---~~-------------~~~~~~i~~s~d 189 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF---AD-------------ISIPNSICFSPD 189 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE---EE-------------ESSEEEEEECTT
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee---CC-------------CcccCCeEEcCC
Confidence 1 11246899999999997765442 24555555 33321110 00 013678999999
Q ss_pred CCeEEEEE-ecCeEEEEECC--CC-ee-----eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCcee
Q 015301 154 GQELVAAG-SDNFIYVYDLQ--AN-KC-----SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRAN 224 (409)
Q Consensus 154 ~~~l~~~~-~d~~i~v~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 224 (409)
++.++.+. .++.|.+||+. ++ +. ...+......+..+++. +++++.++...++.|..||. .++..
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~-----~g~~~ 263 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-----DGNHI 263 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-----TCCEE
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECC-----CCCEE
Confidence 98776654 46899999985 55 32 22223334557789998 78887777766788999995 34555
Q ss_pred eeeeccccceeEEEEc-CCCCeEEEEeCC
Q 015301 225 GVLMGHLEGITFIDSR-RDGRYFISNGKD 252 (409)
Q Consensus 225 ~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 252 (409)
..+..+...+.+++|. ++++.|++++..
T Consensus 264 ~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 264 ARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 5565566679999998 888776655443
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=9.5e-12 Score=105.04 Aligned_cols=234 Identities=14% Similarity=0.042 Sum_probs=145.4
Q ss_pred ceEEEEEeCCCCcEEEEEe--cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-
Q 015301 86 WTITDTSLSPDQRFLVYAS--ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS- 162 (409)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 162 (409)
..+..++++|+|+.+++.. .++.++||.+.+++..... .. ......+...+..++++++++++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p---~~------~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFP---PQ------SGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESC---CC------CSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCC---Cc------ccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 3689999999999888864 2343556665433321110 00 0111234457999999999876555433
Q ss_pred ----cCeEEEEECCCCeeeeEEcC------CCCCeEEEEEeCCCCcEEEEee---CCCeEEEecccccccCCceeeeeec
Q 015301 163 ----DNFIYVYDLQANKCSLRIPA------HKSDVNTVCFADETGHLIFSGS---DDSLCKVWDRRCFISKGRANGVLMG 229 (409)
Q Consensus 163 ----d~~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~ 229 (409)
++.|.+||+.+++.+..+.. +...+..+++.+.++..+++.. .++.|.+||+. .++....+.+
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~----~g~~~r~~~~ 163 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ----TGLAARVLQG 163 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT----TCCEEEECTT
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC----CCCEEEEecC
Confidence 47899999999987766642 2245689999944455556655 67899999964 4444444433
Q ss_pred ccccee-EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccc
Q 015301 230 HLEGIT-FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV 308 (409)
Q Consensus 230 ~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (409)
|..... ...+.++|..+.+...++.++.|...
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~----------------------------------------------- 196 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG----------------------------------------------- 196 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCC-----------------------------------------------
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecc-----------------------------------------------
Confidence 322110 13344466666666667766555311
Q ss_pred eeeeeEEEEeeeecCCCCEEEEEeCCC-eEEEEEccC---Cc-----eEE--EeccCCcceeeeEEecCcCeEEeecCCC
Q 015301 309 LRTLIRCYFSPEYSTAQKYIYTGSSDN-SVYIYDLVS---GA-----QVA--KLDFHNAPVRDCCWHPIYPMLISSSWDC 377 (409)
Q Consensus 309 ~~~~~~~~~~~~~s~~~~~l~~~~~dg-~v~i~d~~~---~~-----~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg 377 (409)
...++++|+++.|+.+..++ .++.++... +. ... ...++......++++++|.++++...++
T Consensus 197 -------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 197 -------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp -------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT
T ss_pred -------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC
Confidence 13457899999888887765 555555321 10 000 1113444567899999999888888899
Q ss_pred eEEEEecCC
Q 015301 378 NIVRWEIPG 386 (409)
Q Consensus 378 ~i~iw~~~~ 386 (409)
.|.+||..+
T Consensus 270 ~V~~~d~~~ 278 (343)
T 2qe8_A 270 AIGVITSAD 278 (343)
T ss_dssp EEEEEETTT
T ss_pred eEEEEECCC
Confidence 999999833
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.43 E-value=3.9e-11 Score=110.18 Aligned_cols=309 Identities=9% Similarity=0.076 Sum_probs=179.7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccc--------eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRW--------TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.++.|.-+|..+++.+.+......... ....+++ ++..|++++.|+.|..+|..+++.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677777788999999999977665432211000 0011222 3567888889999999999998765443
Q ss_pred cee-ceeeeeeeecCCCCcceeeEE-EEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCCC---------
Q 015301 124 NVT-EIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD--------- 186 (409)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~--------- 186 (409)
... ..... ..+.. ... .+..+++++. ++.|+.+|.++|+.+..+......
T Consensus 155 ~~~~~~~~~-----------~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 155 NTFEGQKGS-----------LTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ETTTTCCSS-----------CBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred cCCcCcCcC-----------cccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 322 10000 00110 011 1334555543 789999999999998777532211
Q ss_pred -----------------------eEEEEEeCCCCcEEEEeeCCC-------------------eEEEecccccccCCcee
Q 015301 187 -----------------------VNTVCFADETGHLIFSGSDDS-------------------LCKVWDRRCFISKGRAN 224 (409)
Q Consensus 187 -----------------------v~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~ 224 (409)
...+++. +++.+++.++.++ .|..+|.+ +++..
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~----TG~~~ 296 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD----TGKYK 296 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEE
T ss_pred cccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC----CCCEE
Confidence 1356777 6677888777664 48888864 56655
Q ss_pred eeeec--cc-------cceeEEEEcCCC---CeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 225 GVLMG--HL-------EGITFIDSRRDG---RYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 225 ~~~~~--~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
..+.. |. .....+....+| ..++.++.+|.+.++|.++++.......... .|... +. ......
T Consensus 297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~~~~~-~d--~~g~~~ 371 (677)
T 1kb0_A 297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV--NWASG-YD--KHGKPI 371 (677)
T ss_dssp EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--SSEEE-EC--TTSCEE
T ss_pred EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc--Ccccc-cC--CCCcee
Confidence 54432 21 112223333467 6788999999999999998765443321110 01000 00 000000
Q ss_pred cc----cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-----------------------------------
Q 015301 293 KH----PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS----------------------------------- 333 (409)
Q Consensus 293 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----------------------------------- 333 (409)
.. ..+.....+.+.... .....++++|++.++++...
T Consensus 372 ~~~~~~~~~~~~~~~P~~~G~----~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 447 (677)
T 1kb0_A 372 GIAAARDGSKPQDAVPGPYGA----HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (677)
T ss_dssp ECGGGGCTTSCEECSSCTTCS----SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred eccccCcCCCccEECcCcccc----cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence 00 000000000000000 00113467777777766543
Q ss_pred --------CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 --------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 --------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.|.|..||+.+++.+.+++ +..++....+..++.+++.++.||.+++||..+++..
T Consensus 448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 448 AEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 2789999999999988876 4445666677778888888999999999999987753
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.42 E-value=5e-11 Score=109.66 Aligned_cols=311 Identities=8% Similarity=0.050 Sum_probs=177.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc-------ceE-EEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALR-------WTI-TDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~-------~~v-~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.++.|.-+|..+++.+.+........ ..+ ..++. .+..|++++.|+.|..+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5567777788899999999997766543211100 000 11122 3567888889999999999998865433
Q ss_pred cee-ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE------ecCeEEEEECCCCeeeeEEcCCC------------
Q 015301 124 NVT-EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG------SDNFIYVYDLQANKCSLRIPAHK------------ 184 (409)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~------------ 184 (409)
... ..... ......++ + .++ .+++++ .++.|..||.++|+.+..+....
T Consensus 148 ~~~~~~~~~------~~~~~sP~----v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 148 DTRADHKRS------YTITGAPR----V-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp ECCSCTTSC------CBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred cCcCCCCCC------ccccCCcE----E-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 321 10000 00000011 1 144 344443 36899999999999887764210
Q ss_pred -------------------CCeEEEEEeCCCCcEEEEeeCCCe-------------------EEEecccccccCCceeee
Q 015301 185 -------------------SDVNTVCFADETGHLIFSGSDDSL-------------------CKVWDRRCFISKGRANGV 226 (409)
Q Consensus 185 -------------------~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~ 226 (409)
.....+++. ++..+++.++.++. |..+|.+ +++....
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----TG~~~W~ 290 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----TGEYVWH 290 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----TCCEEEE
T ss_pred cccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----CCceeEe
Confidence 011256787 66778888887764 8889965 6666655
Q ss_pred eec--cc-------cceeEEEEcCCCC---eEEEEeCCCcEEEeeCCCCcccccccccccccccccc-------cccccc
Q 015301 227 LMG--HL-------EGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR-------WMEYPS 287 (409)
Q Consensus 227 ~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 287 (409)
+.. |. .+........+|+ .++.++.+|.++++|.++++......... ..|... .+....
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~~~~~~~pi~~~~ 368 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP--QSWTKGMDMKTGRPILDEE 368 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CSSEEEEETTTTEEEECHH
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc--cccccccCccCCCcccchh
Confidence 443 21 1122222223554 78889999999999998876543322111 111110 000000
Q ss_pred cceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC----------------------------------
Q 015301 288 YARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS---------------------------------- 333 (409)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------------------------- 333 (409)
.. ...+.......+.+..... ....++++|+..++++...
T Consensus 369 ~~--~~~~~~~~~~~~p~~~Gg~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 369 NA--AYWKNGKRNLVTPAFWGAH----DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp HH--CTTTSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred hc--cccCCCCeeEeCCCccccc----CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 00 0000000000000000000 0112456666666665421
Q ss_pred -----------CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 -----------DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 -----------dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+|.|+.||+.+++.+.+++.+. ++..-.+...+.+++.++.||.|+.||..+++..
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 3789999999999998887543 4444567777889999999999999999988764
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.42 E-value=6.7e-10 Score=95.18 Aligned_cols=267 Identities=9% Similarity=-0.027 Sum_probs=161.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc------cceEE-EEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKAL------RWTIT-DTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~------~~~v~-~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
++..+++++.++.|..+|.++++.+......... ...+. .+.. ++..+++++.++.|..+|..+++.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 3567888888899999999988665443321110 11222 2222 3567778888999999999988764332
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe-----EEEEEeCCCCc
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV-----NTVCFADETGH 198 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~ 198 (409)
...... ...++ . .+..+++++.++.|..+|..+++.+.......... ...... +.
T Consensus 130 ~~~~~~-----------~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~ 189 (376)
T 3q7m_A 130 KVAGEA-----------LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG 189 (376)
T ss_dssp ECSSCC-----------CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT
T ss_pred eCCCce-----------EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC
Confidence 221110 00011 1 13467788889999999999999887765432211 222222 35
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeecccc-------ceeEEEEcC--CCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE-------GITFIDSRR--DGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
.++.++.++.+..+|.. +++.......... .+..+...| .+..++.++.++.+..+|.++.+.
T Consensus 190 ~v~~g~~~g~l~~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~---- 261 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI---- 261 (376)
T ss_dssp EEEECCTTTEEEEEETT----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE----
T ss_pred EEEEEcCCCEEEEEECC----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE----
Confidence 67788889999999964 5555444332110 000011111 245677788899999999877332
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
+-...... . ..+.. ++..|++++.++.|..+|..+++.+.
T Consensus 262 ------------------------------~w~~~~~~----~----~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 262 ------------------------------MWKRELGS----V----NDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp ------------------------------EEEECCCC----E----EEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred ------------------------------EeeccCCC----C----CCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 11111100 0 11122 35678888889999999999999887
Q ss_pred Eecc-CCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 350 KLDF-HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 350 ~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.... ....+...... +..|+.++.+|.|+++|..+++.
T Consensus 302 ~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 302 TQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCE
T ss_pred eecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcE
Confidence 7652 22233334432 45788888899999999987654
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.41 E-value=2.2e-10 Score=105.43 Aligned_cols=323 Identities=9% Similarity=0.013 Sum_probs=172.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC---CCcEEEEEe------cCCEEEEEEcCCCcccc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP---DQRFLVYAS------ICAIVNIVDVGSSARES 121 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~------~dg~i~~w~~~~~~~~~ 121 (409)
++..+++++.|+.|..+|..+++.+.......... ....+..+| ++. +++++ .+|.|+.||..+++...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK-RSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTT-SCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCC-CCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 35678888899999999999997765543320000 001111122 444 44443 36899999999988654
Q ss_pred ccceeceeeeeeee--------cCCC--------CcceeeEEEEEcCCCCeEEEEEecCe-------------------E
Q 015301 122 LANVTEIHKGLDFS--------ADGD--------EDEFGIFSVKFSTDGQELVAAGSDNF-------------------I 166 (409)
Q Consensus 122 ~~~~~~~~~~~~~~--------~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~-------------------i 166 (409)
............+. .... .....-..++++|+...++++..++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 33211000000000 0000 00011235788888888888877753 9
Q ss_pred EEEECCCCeeeeEEcC--CC-------CCeEEEEEeCCCCc---EEEEeeCCCeEEEecccccccCCceeeeeeccc---
Q 015301 167 YVYDLQANKCSLRIPA--HK-------SDVNTVCFADETGH---LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL--- 231 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 231 (409)
..+|.++|+.+..++. |. .++...... .++. .++.++.+|.++++|.+ +++.+.......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRA----TGELLSAKGIVPQSW 352 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSS
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECC----CCCEecccccccccc
Confidence 9999999999887754 21 122222222 2444 78899999999999965 454432111000
Q ss_pred -------------------------c-----------ceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccc
Q 015301 232 -------------------------E-----------GITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRD 275 (409)
Q Consensus 232 -------------------------~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 275 (409)
. .-..++++|+..++++...+....++............... .
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~-~ 431 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY-Q 431 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC-C
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc-c
Confidence 0 01136788888888887776655555443310000000000 0
Q ss_pred ccccccccc------------ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc
Q 015301 276 YDWDYRWME------------YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV 343 (409)
Q Consensus 276 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~ 343 (409)
......... .......+....++.+-.+..+... ....++..+.+++.|+.||.++.||.+
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-------~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-------NGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-------CCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-------cCccceECCCEEEEECCCCcEEEEECC
Confidence 000000000 0001111222223333232222110 111344467899999999999999999
Q ss_pred CCceEEEeccCCcc-eeeeEEecCcC-eEEeecC--------------------CCeEEEEecCCCc
Q 015301 344 SGAQVAKLDFHNAP-VRDCCWHPIYP-MLISSSW--------------------DCNIVRWEIPGIG 388 (409)
Q Consensus 344 ~~~~~~~~~~~~~~-v~~~~~s~~~~-~l~s~~~--------------------dg~i~iw~~~~~~ 388 (409)
+|+.+.+++...+. ..-+.|..+|+ |+++.+. .+.+.+|.+....
T Consensus 505 tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~ 571 (689)
T 1yiq_A 505 TGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA 571 (689)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred CCccceeeeCCCCcccCceEEEECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence 99999888754332 24567788888 5444322 2367888876544
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.40 E-value=2.7e-09 Score=90.10 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=143.3
Q ss_pred CCCcEEEEE-ecCCEEEEEEcCCCcc-cccccee---ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------
Q 015301 95 PDQRFLVYA-SICAIVNIVDVGSSAR-ESLANVT---EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------ 163 (409)
Q Consensus 95 ~~~~~l~~~-~~dg~i~~w~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 163 (409)
+++++|++. -.++.|.++|+.+... ....+.. +..... .......+..+|+| .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~--------g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS--------GYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH--------CEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc--------CCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 778877765 4678899999975421 1111111 000000 01135667888999 66666555
Q ss_pred CeEEEEECCCCeeeeEEcCCCC---CeEEEEEeCCCCcEEEEee-------------------CCCeEEEecccccccCC
Q 015301 164 NFIYVYDLQANKCSLRIPAHKS---DVNTVCFADETGHLIFSGS-------------------DDSLCKVWDRRCFISKG 221 (409)
Q Consensus 164 ~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~ 221 (409)
+.|.++|.++++.+.++..... .-..+.|+ ++++.+++.. .+.+|.+||+. ..
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~----~~ 238 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR----KR 238 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT----TT
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC----CC
Confidence 7899999999999988863222 23457788 7888888874 36899999975 44
Q ss_pred ceeeeeecc--ccceeEEEE--cCCCCeEEEEeC------CCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 222 RANGVLMGH--LEGITFIDS--RRDGRYFISNGK------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 222 ~~~~~~~~~--~~~v~~~~~--~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
+....+... ......+.| +|+++++.+++. +++|.+|......-... . .
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~--~-------------------v 297 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE--K-------------------V 297 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE--E-------------------E
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE--E-------------------E
Confidence 555554432 123345545 999998887774 56788776643110000 0 0
Q ss_pred ccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccC---CceEEEeccCC-----------
Q 015301 292 LKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVS---GAQVAKLDFHN----------- 355 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~---~~~~~~~~~~~----------- 355 (409)
+..+.......+..-.. ....-.....+.+|+||++|.++.. .+.|.+||+.. .+.+..+....
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 00000000000000000 0000012335578999999988876 68999999863 34555554221
Q ss_pred ---cceeeeEEecCcCeEEeec
Q 015301 356 ---APVRDCCWHPIYPMLISSS 374 (409)
Q Consensus 356 ---~~v~~~~~s~~~~~l~s~~ 374 (409)
+.-..++++|||++|+++.
T Consensus 378 ~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTSSEEEEEC
T ss_pred cCCCCCCEEEEcCCCCEEEEEc
Confidence 1357899999999888877
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.40 E-value=8.8e-10 Score=101.25 Aligned_cols=322 Identities=9% Similarity=0.022 Sum_probs=171.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeec-ccc-cceEEE-EEeCCCCcEEEEEec------CCEEEEEEcCCCcccc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIET-KAL-RWTITD-TSLSPDQRFLVYASI------CAIVNIVDVGSSARES 121 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-~~~-~~~v~~-~~~s~~~~~l~~~~~------dg~i~~w~~~~~~~~~ 121 (409)
++..+++++.|+.|..+|..+++.+...... ... ...+.+ ... .+..+++++. ++.|+.+|..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3567888888999999999999776654332 100 001110 011 2345555543 6899999999988654
Q ss_pred ccceeceee-ee-----------eeecCCC-----CcceeeEEEEEcCCCCeEEEEEecC-------------------e
Q 015301 122 LANVTEIHK-GL-----------DFSADGD-----EDEFGIFSVKFSTDGQELVAAGSDN-------------------F 165 (409)
Q Consensus 122 ~~~~~~~~~-~~-----------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~-------------------~ 165 (409)
......... .. .+..... ........++++|++..++++..++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 332211100 00 0000000 0011123578888888888877654 5
Q ss_pred EEEEECCCCeeeeEEcC--CC-------CCeEEEEEeCCCC---cEEEEeeCCCeEEEecccccccCCceeeeeeccc--
Q 015301 166 IYVYDLQANKCSLRIPA--HK-------SDVNTVCFADETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL-- 231 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 231 (409)
|..+|..+++.+..++. |. .....+... .++ ..++.++.+|.++++|.+ +++.+.......
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPVN 359 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCS
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECC----CCCEeccccccccC
Confidence 99999999999887753 21 112222332 356 689999999999999965 555544332110
Q ss_pred ---------cce------------------------eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc-cccc---c
Q 015301 232 ---------EGI------------------------TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD-NSRL---R 274 (409)
Q Consensus 232 ---------~~v------------------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~ 274 (409)
.++ ..++++|+..++++...+-...++........... .... .
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 001 14678888888887766544444433210000000 0000 0
Q ss_pred cc---cccccccccc--ccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 275 DY---DWDYRWMEYP--SYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 275 ~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
.. .+........ .....+....++.+-.+.... ..+...++.++.+++.++.||.+++||..+++.+.
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-------CCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 00 0000000000 000111111122222221110 01222345567889999999999999999999999
Q ss_pred EeccCC-cceeeeEEecCcC-eEEeecC----------------CCeEEEEecCC
Q 015301 350 KLDFHN-APVRDCCWHPIYP-MLISSSW----------------DCNIVRWEIPG 386 (409)
Q Consensus 350 ~~~~~~-~~v~~~~~s~~~~-~l~s~~~----------------dg~i~iw~~~~ 386 (409)
++.... ....-+.|..+|+ +++..+. .+.+..|.+..
T Consensus 513 ~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 513 EAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred eeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 987443 2334456778887 4444222 47899999874
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.38 E-value=2.9e-10 Score=99.42 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=154.4
Q ss_pred CCcEEEEEec-CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-c-CCCCeEEEEE-----------
Q 015301 96 DQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-S-TDGQELVAAG----------- 161 (409)
Q Consensus 96 ~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~----------- 161 (409)
||++|.+... ++.|.+.|+.+.+......+... ..+..+++ + |+++++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g--------------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA--------------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC--------------CSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC--------------CCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 7888887664 56799999999886554432211 13677887 4 8999998884
Q ss_pred -------ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC---------------------------
Q 015301 162 -------SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS--------------------------- 207 (409)
Q Consensus 162 -------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------------------- 207 (409)
.++.+.++|.++.+....+.-.. ....++++ ++++++++.+.+.
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 35689999999999888876433 45677888 7888888887553
Q ss_pred -----------eEEEecccccccCCce-eeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCccccccccccc
Q 015301 208 -----------LCKVWDRRCFISKGRA-NGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLR 274 (409)
Q Consensus 208 -----------~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 274 (409)
.|.+.|.+.. .+.. +..+. -.....++.++|||+++++++ .+.+|.++|+.+........
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~---- 316 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKE--ASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN---- 316 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGG--GCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC----
T ss_pred eccCCCeeEECcEEEEeCccc--CCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc----
Confidence 2444443310 0122 22222 123456789999999877765 47899999998632110000
Q ss_pred ccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccC----------
Q 015301 275 DYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVS---------- 344 (409)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~---------- 344 (409)
+ .+........... ......+|+|+|...++...|+.|.+||+.+
T Consensus 317 -----------------l-~~~~~v~~~v~vG-------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 317 -----------------A-DPRSAVVAEPELG-------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp -----------------C-CGGGGEEECCBCC-------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred -----------------c-CcccceEEEcCCC-------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 0 0000011111100 1124557999995555666799999999987
Q ss_pred CceEEEeccCCcce-----eeeEEecCcCeEEeec---CCCeE----------EEEecCCCc
Q 015301 345 GAQVAKLDFHNAPV-----RDCCWHPIYPMLISSS---WDCNI----------VRWEIPGIG 388 (409)
Q Consensus 345 ~~~~~~~~~~~~~v-----~~~~~s~~~~~l~s~~---~dg~i----------~iw~~~~~~ 388 (409)
.+.+.++..|..+- ..+..+|||++|+++. .|..+ .++|++.++
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56777777665432 3446789999998864 34321 788885443
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.38 E-value=1.6e-08 Score=86.64 Aligned_cols=263 Identities=11% Similarity=0.032 Sum_probs=157.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceee
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHK 130 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 130 (409)
++..+++++.++.|..+|.++++.............. ... .+..+++++.++.|..+|..+++............
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~---p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSR---PVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSC---CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcC---CEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 4567778888999999999988665443222111101 111 14577788889999999998887544332211100
Q ss_pred eeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCC----------e-EEEEEeCCCCcE
Q 015301 131 GLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSD----------V-NTVCFADETGHL 199 (409)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~ 199 (409)
. . .. ...... .+..+++++.++.+..+|..+++.+......... + ..... .+..
T Consensus 177 ~--~----~~----~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~ 241 (376)
T 3q7m_A 177 S--L----RG----ESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGV 241 (376)
T ss_dssp --------CC----CCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTE
T ss_pred e--e----cC----CCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCE
Confidence 0 0 00 011111 1346777888999999999999988766432110 1 11112 2456
Q ss_pred EEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccc
Q 015301 200 IFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWD 279 (409)
Q Consensus 200 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 279 (409)
++.++.++.+..+|.+ +++...... ......+.. ++..++.++.++.+..+|..+.+...
T Consensus 242 v~~~~~~g~l~~~d~~----tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w------------ 301 (376)
T 3q7m_A 242 VFALAYNGNLTALDLR----SGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW------------ 301 (376)
T ss_dssp EEEECTTSCEEEEETT----TCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE------------
T ss_pred EEEEecCcEEEEEECC----CCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE------------
Confidence 7778889999999964 555444332 223334443 36678888889999999988743211
Q ss_pred cccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCccee
Q 015301 280 YRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVR 359 (409)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~ 359 (409)
....... .. ...+.. .+..|++++.+|.|+++|..+++.+.........+.
T Consensus 302 ----------------------~~~~~~~-~~----~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~ 352 (376)
T 3q7m_A 302 ----------------------TQSDLLH-RL----LTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ 352 (376)
T ss_dssp ----------------------EECTTTT-SC----CCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC
T ss_pred ----------------------eecccCC-Cc----ccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce
Confidence 1110000 00 001111 256788899999999999999999888765444443
Q ss_pred eeEEecCcCeEEeecCCCeEEEEe
Q 015301 360 DCCWHPIYPMLISSSWDCNIVRWE 383 (409)
Q Consensus 360 ~~~~s~~~~~l~s~~~dg~i~iw~ 383 (409)
...... +..|+.++.||.|+.|+
T Consensus 353 ~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 353 TEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred eCCEEE-CCEEEEEeCCCEEEEEe
Confidence 322222 44677788899999986
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.37 E-value=6.1e-13 Score=113.20 Aligned_cols=202 Identities=12% Similarity=0.178 Sum_probs=109.8
Q ss_pred CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe
Q 015301 96 DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK 175 (409)
Q Consensus 96 ~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 175 (409)
++..+++++.||.|+.||..+++....... . ++.+..+..++..+++++.|+.|+.||.++++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~----------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D----------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C----------------CSCCCC-----CCEEECTTTCCEEEC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C----------------CceecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence 577899999999999999999876543332 1 23333344577777777889999999999998
Q ss_pred eeeEEcCCCCC-eE-EEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC
Q 015301 176 CSLRIPAHKSD-VN-TVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ 253 (409)
Q Consensus 176 ~~~~~~~~~~~-v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 253 (409)
.+..+..+... +. ...+ ..+..+++++.++.++.||.+ +++....+..+. ...++|++..+++++.|+
T Consensus 71 ~~w~~~~~~~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg 140 (369)
T 2hz6_A 71 GLTKLPFTIPELVQASPCR--SSDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEY 140 (369)
T ss_dssp CSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEE
T ss_pred eeeeeeccCccccccCceE--ecCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccccCCEEEEEecCC
Confidence 77666433211 10 1111 135578888899999999965 566655554433 234566888899999999
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCC---CEEEE
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQ---KYIYT 330 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~ 330 (409)
.|..||.++++.. ..+.... ...+.++++. ..+++
T Consensus 141 ~v~a~d~~tG~~~----------------------------------W~~~~~~--------~~~~~~~~~~~~~~~v~~ 178 (369)
T 2hz6_A 141 TITMYDTKTRELR----------------------------------WNATYFD--------YAASLPEDDVDYKMSHFV 178 (369)
T ss_dssp EEECCCSSSSSCC----------------------------------CEEEEEE--------ECCBCCCCCTTCCCCEEE
T ss_pred EEEEEECCCCCEE----------------------------------EeEeccc--------ccCccccCCccccceEEE
Confidence 9999999874322 1111110 1122333322 45777
Q ss_pred EeCCCeEEEEEccCCceEEEeccCCcceee-eEEecCc
Q 015301 331 GSSDNSVYIYDLVSGAQVAKLDFHNAPVRD-CCWHPIY 367 (409)
Q Consensus 331 ~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~-~~~s~~~ 367 (409)
++.||.|+.||..+++.+.+... ..++.. ..+++++
T Consensus 179 ~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 179 SNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp EETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc
Confidence 88999999999999998877763 334432 3444444
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.35 E-value=7e-10 Score=93.63 Aligned_cols=200 Identities=17% Similarity=0.095 Sum_probs=128.3
Q ss_pred EEC--CCCCEEEE-EeCCCcEEEEEcCCC-e--eeeeeee---c--ccccceEEEEEeCCCCcEEEEEecC------CEE
Q 015301 47 QFS--NDGSFFVA-ASQESNIKVYNVDKN-W--KIQKDIE---T--KALRWTITDTSLSPDQRFLVYASIC------AIV 109 (409)
Q Consensus 47 ~~s--~~~~~l~t-~~~d~~i~vw~~~~~-~--~~~~~~~---~--~~~~~~v~~~~~s~~~~~l~~~~~d------g~i 109 (409)
.++ +++++|+. +..+++|.|+|+.+. . .+....+ . .........+..+|+| .++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 347 88888765 556788999998654 1 2222221 1 0011246778889999 66665544 789
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-------------------ecCeEEEEE
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-------------------SDNFIYVYD 170 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~d~~i~v~d 170 (409)
.++|..+.+........... ..--+.+.|+|+++.+++.. ....|.+||
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGD------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp EEECTTTCCEEEECCSBCTT------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred EEEECCCCeEEEEEccCCCC------------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 99999988765444322111 01134688899999888774 268999999
Q ss_pred CCCCeeeeEEcCCC--CCeEEEEE--eCCCCcEEEEee------CCCeEEEecccccccCCceeeee--ec---------
Q 015301 171 LQANKCSLRIPAHK--SDVNTVCF--ADETGHLIFSGS------DDSLCKVWDRRCFISKGRANGVL--MG--------- 229 (409)
Q Consensus 171 ~~~~~~~~~~~~~~--~~v~~~~~--~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~--~~--------- 229 (409)
+.+++.+.++.... .....+.| + |+++++++++ .+++|.+|.... ......+.+ ..
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccccc
Confidence 99998888876421 23455655 7 7888877766 456887766431 111111110 00
Q ss_pred -------cccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCC
Q 015301 230 -------HLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 262 (409)
Q Consensus 230 -------~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 262 (409)
-......+.+++||++|.++.. .+.|.+||+..
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0234678999999999888766 67999999864
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.35 E-value=8.3e-11 Score=98.76 Aligned_cols=249 Identities=10% Similarity=0.031 Sum_probs=149.2
Q ss_pred EEEECCCCCEEEEEe----------CCCcEEEEEcCCCeeeeeeeecccc----cceEEEEEeCCCCcEEEEEec--CCE
Q 015301 45 TSQFSNDGSFFVAAS----------QESNIKVYNVDKNWKIQKDIETKAL----RWTITDTSLSPDQRFLVYASI--CAI 108 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~--dg~ 108 (409)
.++|+|||++++++. .+++|.+||..+.+........... ......++++|||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999998886 3688999999999776654322000 013556899999999999874 457
Q ss_pred EEE--EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCC-eEEEEEecCeEEEEECCC-----Ceeee--
Q 015301 109 VNI--VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQ-ELVAAGSDNFIYVYDLQA-----NKCSL-- 178 (409)
Q Consensus 109 i~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-----~~~~~-- 178 (409)
+.+ +|..+ . ...... .. ..+.|+++ .+++.+.|+.+.+.|+++ ++...
T Consensus 149 v~V~~iD~~t--v-~~i~v~-----------------~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 149 AGLSVPGASD--D-QLTKSA-----------------SC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp EEEEETTTEE--E-EEEECS-----------------SC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred EEEEEEchhh--c-eEEECC-----------------Cc--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 888 88866 1 110000 01 11223332 334445677777778776 43321
Q ss_pred --EEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----------cccceeEEEEcCCCCeE
Q 015301 179 --RIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----------HLEGITFIDSRRDGRYF 246 (409)
Q Consensus 179 --~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l 246 (409)
.+.....+. . . +++..++..+. +.+.+.|+.. ........+.. .......+.++|+++.+
T Consensus 207 t~~i~vg~~P~---~-~-~~~~~~~~vs~-~~V~viD~~~--~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l 278 (368)
T 1mda_H 207 TGAQNCSSQAA---Q-A-NYPGMLVWAVA-SSILQGDIPA--AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp CTTSCBCSCCE---E-E-TTTTEEEECBS-SCCEEEECCS--SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eeeeeCCCCcc---c-c-ccCCEEEEEcC-CEEEEEECCC--CcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence 111122333 3 4 44455555555 8999999641 11111111110 11122236899999988
Q ss_pred EEEeC---------CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEE
Q 015301 247 ISNGK---------DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYF 317 (409)
Q Consensus 247 ~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (409)
+++.. ++.+.++|+.+.+ .+..+.... ...
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~~----------------------------------vv~~i~vg~-------~p~ 317 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVGQ----------------------------------TSGPISNGH-------DSD 317 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCC----------------------------------EEECCEEEE-------EEC
T ss_pred EEEeccccCcccccCCCEEEEECCCCe----------------------------------EEEEEECCC-------Ccc
Confidence 76543 2356699998832 233332221 245
Q ss_pred eeeecCCCC-EEEEEe-CCCeEEEEEccCCceEEEeccCCcceeeeEEec
Q 015301 318 SPEYSTAQK-YIYTGS-SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHP 365 (409)
Q Consensus 318 ~~~~s~~~~-~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 365 (409)
.+.++|||+ ++++.. .++.|.++|+.+++.+.++.... ....+++.+
T Consensus 318 gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 318 AIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred eEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 668999998 455555 58999999999999999997544 334555543
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.35 E-value=4.9e-13 Score=113.80 Aligned_cols=184 Identities=9% Similarity=-0.007 Sum_probs=108.0
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecccc
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLE 232 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 232 (409)
++..+++++.|+.|+.||..+|+.+..+.. ..+.+..+. .++..+++++.||.|+.||.. +++.+.....+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~----tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSK----NNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC---------CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECC----CCceeeeeeccCc
Confidence 567899999999999999999999988875 455555555 566778888899999999964 4444433332211
Q ss_pred -cee-EEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 233 -GIT-FIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 233 -~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
.+. +..+. .+..+++++.|+.+..||.++++. +..+..+..
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~----------------------------------~w~~~~~~~-- 123 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK----------------------------------QQTLSSAFA-- 123 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE----------------------------------EEEecCCCc--
Confidence 111 11111 345677888899999999988433 222222110
Q ss_pred eeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEecCc---CeEEeecCCCeEEEEecCCC
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIY---PMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~ 387 (409)
..++|++..+++++.|+.|+.||..+++.+..+..+. .....++++. ..+++++.||.|+.||..++
T Consensus 124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 1234467889999999999999999998876654321 2334444432 46777888999999999877
Q ss_pred ccc
Q 015301 388 GEA 390 (409)
Q Consensus 388 ~~~ 390 (409)
+..
T Consensus 194 ~~~ 196 (369)
T 2hz6_A 194 DVL 196 (369)
T ss_dssp CEE
T ss_pred cEE
Confidence 653
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.35 E-value=1.1e-10 Score=98.25 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=159.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..+.++...++|. |..++.+ +..+|. ++....... .. ........+. +..|.+++.++.+..+|.. ++..
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~-~~--~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~ 129 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD-TK--KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEK 129 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC-C-------CCEEEE--TTEEEEECTTSEEEEECTT-SCEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE-CC--CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEE
Confidence 4457777777776 4444444 888885 443322211 11 1111222222 4567778888999999987 4432
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
...... ...+.++...+++. +.+++.++.|..+|.. ++....+......+.++... .++.++
T Consensus 130 ~~~~~~---------------~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d-~~g~l~ 191 (330)
T 3hxj_A 130 WRFKTK---------------KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG-KDGTIY 191 (330)
T ss_dssp EEEECS---------------SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTCCEE
T ss_pred EEEcCC---------------CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc-CCCEEE
Confidence 211110 11244556666776 6667778999999998 87777666556667777776 566655
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccc
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDY 280 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 280 (409)
+ ++ +.+..+| . .+............+.++...+++. +..++.++.+..+|...
T Consensus 192 v-~t--~~l~~~d-~----~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g------------------ 244 (330)
T 3hxj_A 192 F-GS--DKVYAIN-P----DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG------------------ 244 (330)
T ss_dssp E-ES--SSEEEEC-T----TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS------------------
T ss_pred E-Ee--CEEEEEC-C----CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC------------------
Confidence 4 44 7788888 3 4444444444446678888888775 55566777888887432
Q ss_pred ccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceee
Q 015301 281 RWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRD 360 (409)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~ 360 (409)
..+..+..... ...++...+++ .|..++.+|.|..+|. +++.+..+......+.+
T Consensus 245 -----------------~~~~~~~~~~~------~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~ 299 (330)
T 3hxj_A 245 -----------------TEKWRFKTGKR------IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIAT 299 (330)
T ss_dssp -----------------CEEEEEECSSC------CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred -----------------CEeEEeeCCCC------ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccc
Confidence 11111111110 00122334344 5777888888999995 78877777655667788
Q ss_pred eEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 361 CCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 361 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+...+++. |..++.+|.+++...+...
T Consensus 300 ~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 300 PVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CEECTTCC-EEEECTTSCEEEEEC----
T ss_pred eEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 88877776 5557789999988766543
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.26 E-value=8.9e-08 Score=77.59 Aligned_cols=251 Identities=9% Similarity=0.046 Sum_probs=146.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCeee----eeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCccccccceec
Q 015301 53 SFFVAASQESNIKVYNVDKNWKI----QKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTE 127 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~ 127 (409)
.+|+.+.. +.|+.++++..... ...... ....+..++|++++..|..+ ..++.|..++........... .
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~--~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI--PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--Q 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE--EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--T
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecC--CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--C
Confidence 45555553 47888888765321 111111 12357899999976666555 457899999987654221110 0
Q ss_pred eeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-
Q 015301 128 IHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD- 205 (409)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~- 205 (409)
.......+++++++..|+.+. ..+.|.++++..................++++|.++.++++...
T Consensus 77 -------------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 77 -------------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp -------------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred -------------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence 011478899999766666554 46789999986543222233223567899999334544444433
Q ss_pred -CCeEEEecccccccCCceeeeee-ccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCccccccccccccccccccc
Q 015301 206 -DSLCKVWDRRCFISKGRANGVLM-GHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRW 282 (409)
Q Consensus 206 -dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (409)
.+.|..+++. +.....+. ........+++++++..|+.+ ...+.|..+|+.....
T Consensus 144 ~~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----------------- 201 (267)
T 1npe_A 144 DNPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----------------- 201 (267)
T ss_dssp SSCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-----------------
T ss_pred CCcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-----------------
Confidence 4678888753 22222221 223457889999987666554 4567899999864110
Q ss_pred ccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC-cceeee
Q 015301 283 MEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-APVRDC 361 (409)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~v~~~ 361 (409)
........ .. ..++.. ++.++++...++.|..+|..+++.+.++.... .....+
T Consensus 202 -----------------~~~~~~~~---~P----~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi 256 (267)
T 1npe_A 202 -----------------RKVLEGLQ---YP----FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI 256 (267)
T ss_dssp -----------------EEEEECCC---SE----EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCE
T ss_pred -----------------EEEecCCC---Cc----eEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccccccee
Confidence 00111100 01 122232 34444444456899999999999888886433 246788
Q ss_pred EEecCcC
Q 015301 362 CWHPIYP 368 (409)
Q Consensus 362 ~~s~~~~ 368 (409)
++.|++.
T Consensus 257 ~~~~~~~ 263 (267)
T 1npe_A 257 TIALSQC 263 (267)
T ss_dssp EEECSCC
T ss_pred eecCccC
Confidence 8888764
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.24 E-value=2.3e-09 Score=90.04 Aligned_cols=259 Identities=13% Similarity=0.112 Sum_probs=155.3
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccc
Q 015301 45 TSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 45 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 124 (409)
++....+|. +..++.++.|..|| .+++..... ......+.++...+++..+ +++.+ |..+|. +++......
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~---~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF---KSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS---CGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE---ecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEE
Confidence 345555664 56667788899999 776544332 1223356777787777644 44444 888886 444322222
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
.... ......+. +..+.+++.++.|..+|.. ++.......+...+.++... +++. ++.++
T Consensus 95 ~~~~---------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~-l~vgt 154 (330)
T 3hxj_A 95 TKKA---------------IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS-EDGT-IYVGS 154 (330)
T ss_dssp C--------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTSC-EEEEC
T ss_pred CCCC---------------cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc-CCCE-EEEEc
Confidence 1110 01112222 4457778888999999988 77776666555556666665 5555 56677
Q ss_pred CCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccccccccc
Q 015301 205 DDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 205 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
.++.+..+|. . +............+.++...+++.+++ ++ +.|..+| .+..
T Consensus 155 ~~~~l~~~d~----~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~-------------------- 205 (330)
T 3hxj_A 155 NDNYLYAINP----D-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGT-------------------- 205 (330)
T ss_dssp TTSEEEEECT----T-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSC--------------------
T ss_pred CCCEEEEECC----C-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc--------------------
Confidence 8899999994 2 444444444455667777777777554 44 7799998 4421
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
.+..+.... ..+.++..+++|. |.+++.++.|..+| .+++.+..+......+..+...
T Consensus 206 --------------~~~~~~~~~------~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~ 263 (330)
T 3hxj_A 206 --------------EKWNFYAGY------WTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIG 263 (330)
T ss_dssp --------------EEEEECCSS------CCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEEC
T ss_pred --------------EEEEEccCC------cceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEc
Confidence 111111111 1123445566664 55666778888887 4677766666555555666666
Q ss_pred cCcCeEEeecCCCeEEEEec
Q 015301 365 PIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 365 ~~~~~l~s~~~dg~i~iw~~ 384 (409)
+++ .|..++.+|.|..+|.
T Consensus 264 ~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 264 NTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp TTS-CEEEECTTCEEEEECT
T ss_pred CCC-eEEEecCCCCEEEECC
Confidence 555 4566777888999985
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.22 E-value=1.4e-08 Score=80.51 Aligned_cols=200 Identities=8% Similarity=-0.006 Sum_probs=130.4
Q ss_pred eEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCC-CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 145 IFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHK-SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.|++++.++++.+. ++.|.++|+++++.+..+.... .....+++. .+.+.++.-.++.+.++|.. +.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~----t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR----TL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT----TT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC----CC
Confidence 578999998754444443 5799999999999988875322 233456665 34455555578999999964 55
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+..... ....+++||+.++++..++.|.++|..+.+.. .
T Consensus 97 ~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~----------------------------------~ 140 (266)
T 2iwa_A 97 SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLI----------------------------------K 140 (266)
T ss_dssp EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEE----------------------------------E
T ss_pred cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEE----------------------------------E
Confidence 66665543211 12335567887777777889999998874322 2
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCC-------------cceeeeEEecCcC
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHN-------------APVRDCCWHPIYP 368 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-------------~~v~~~~~s~~~~ 368 (409)
.+.-.... ........+.+. +|++.+....++.|.+.|..+++.+..+.... ...+.++|+|+++
T Consensus 141 ~I~Vg~~~-~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~ 218 (266)
T 2iwa_A 141 KHNVKYNG-HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK 218 (266)
T ss_dssp EEECEETT-EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred EEEECCCC-cccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence 21111000 000112233444 56666665568899999999999988886321 2458999999987
Q ss_pred -eEEeecCCCeEEEEecCCCc
Q 015301 369 -MLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 369 -~l~s~~~dg~i~iw~~~~~~ 388 (409)
+++++...+.|.+-++....
T Consensus 219 ~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 219 RIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCCeEEEEEEeccc
Confidence 66667778899999987653
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.21 E-value=6.7e-07 Score=84.48 Aligned_cols=326 Identities=8% Similarity=0.024 Sum_probs=182.5
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCce-e--ecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWK-V--DGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE 80 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-l--~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~ 80 (409)
+.++...++|.+.+......+..+-+...... + ..+...|.++...++|.+.+....+| +.+|+..++........
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecC
Confidence 45566666776544322111222222222111 1 12356799998888887555443345 88999877633221111
Q ss_pred c----ccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe
Q 015301 81 T----KALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE 156 (409)
Q Consensus 81 ~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (409)
. .-....|.++...++|.+.+ |+.+ -|.+|+..++............ ..-....|.++...++|.
T Consensus 254 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~--------~~l~~~~i~~i~~D~~g~- 322 (795)
T 4a2l_A 254 PSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVEN--------GSLSQRSVRSIFMDSQGG- 322 (795)
T ss_dssp TTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTST--------TSCSSSCEEEEEECTTSC-
T ss_pred CCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCC--------CCCCCCcEEEEEEeCCcC-
Confidence 0 11234699999998887665 4444 5888988766543221110000 001123599999998886
Q ss_pred EEEEEecCeEEEEECCCCeeeeEEc------CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee--
Q 015301 157 LVAAGSDNFIYVYDLQANKCSLRIP------AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-- 228 (409)
Q Consensus 157 l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-- 228 (409)
|.+|+.++-|..++..++....... .....|.++... ++++ |..|+.++-|..||.. .........
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d-~~g~-lWiGt~~~Gl~~~~~~----~~~~~~~~~~~ 396 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED-KDKN-LWIGTNDGGLNLYNPI----TQRFTSYTLQE 396 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC-TTSC-EEEEESSSCEEEECTT----TCCEEEECCC-
T ss_pred EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC-CCCC-EEEEECCCCeEEEcCC----CCcEEEEecCC
Confidence 5667777779999876554322111 124568899887 5665 4557777778889853 222211111
Q ss_pred ------ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 229 ------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 229 ------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
.....|.++...++++.|..|+.++-|..||..+.... .
T Consensus 397 ~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-----------------------------------~ 441 (795)
T 4a2l_A 397 DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-----------------------------------N 441 (795)
T ss_dssp -----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-----------------------------------E
T ss_pred CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-----------------------------------E
Confidence 12356889988888875666777777999997763211 1
Q ss_pred eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc------CCcceeeeEEecCcCeEEeecCC
Q 015301 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF------HNAPVRDCCWHPIYPMLISSSWD 376 (409)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~d 376 (409)
+..... ......+.++..+++|.+.+.. .+ -+.+||..+++....... ....|.++...+++.+.+...
T Consensus 442 ~~~~~~-~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-- 516 (795)
T 4a2l_A 442 FNQRNS-QLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-- 516 (795)
T ss_dssp ECTTTS-CCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--
T ss_pred eecCCC-CcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--
Confidence 110000 0000123344455667655544 44 488999877654332211 235789999988888666544
Q ss_pred CeEEEEecCCC
Q 015301 377 CNIVRWEIPGI 387 (409)
Q Consensus 377 g~i~iw~~~~~ 387 (409)
+-|..|+..+.
T Consensus 517 ~Gl~~~~~~~~ 527 (795)
T 4a2l_A 517 EGLSVFKQEGL 527 (795)
T ss_dssp SCEEEEEEETT
T ss_pred CceEEEeCCCC
Confidence 45778876543
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.18 E-value=1.3e-06 Score=82.41 Aligned_cols=285 Identities=7% Similarity=0.061 Sum_probs=169.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeec-----ccccceEEEEEeCCCCcEEEEEecCCEEEEEEc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIET-----KALRWTITDTSLSPDQRFLVYASICAIVNIVDV 114 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~ 114 (409)
...|.++...++|.+.+ |+.+| |.+|+..++.. ...... .-....|.++...++|.+.+ |+.++-|..|+.
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~ 337 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSF-ASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHP 337 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEE-EEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECG
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeE-EEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCC
Confidence 35699999999888555 44455 88999877632 222111 11234699999999887554 666677888887
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc--------CCCCC
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--------AHKSD 186 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~~ 186 (409)
.+........... . ..-....|.++...++|. |.+|+.++-|..||..+++...... .....
T Consensus 338 ~~~~~~~~~~~~~-~--------~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 338 IRNRFKNIRNIPY-K--------NSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp GGGSSEEECCCTT-S--------SSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred CcccceEEcCCCC-C--------CCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence 6543221111000 0 001123589999888886 5567777779999988765433221 12357
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-----ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-----GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
|.++... +++++|..|+.++-+..+|.. .+.. ..+. .....|.++...++|.+.+. +.+ .+.+||..
T Consensus 408 v~~i~~d-~~g~~lWigt~~~Gl~~~d~~----~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~ 479 (795)
T 4a2l_A 408 IKAVYVD-EKKSLVYIGTHAGGLSILHRN----SGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPE 479 (795)
T ss_dssp EEEEEEE-TTTTEEEEEETTTEEEEEETT----TCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETT
T ss_pred EEEEEEc-CCCCEEEEEeCcCceeEEeCC----CCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCC
Confidence 8899887 677756677777779999854 2222 2221 13457889988888875554 444 48889876
Q ss_pred CCcccccccccccccccccccccccccceeccccCccceeeeeccc-ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEE
Q 015301 262 KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIY 340 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~ 340 (409)
+.... .+.... ........+.++..+++|.+.+.. . +-+..|
T Consensus 480 ~~~~~-----------------------------------~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~ 522 (795)
T 4a2l_A 480 QRSFT-----------------------------------TIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVF 522 (795)
T ss_dssp TTEEE-----------------------------------ECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEE
T ss_pred CCeEE-----------------------------------EccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEE
Confidence 52211 110000 000000123344556677755544 4 458889
Q ss_pred EccCCceEEEec-------cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 341 DLVSGAQVAKLD-------FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 341 d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
|..+++. .+. .....|.++...++|.+.++.. . -|..||..+.
T Consensus 523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 523 KQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp EEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred eCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence 9877665 222 1345788999888888665443 3 4777886543
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=1.7e-08 Score=92.65 Aligned_cols=308 Identities=9% Similarity=0.079 Sum_probs=170.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeeccccc-------ceE-EEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALR-------WTI-TDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~-------~~v-~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.++.|.-+|..+++.+.+........ ..+ ..+++ .+..+++++.|+.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4567777778899999999987765543211100 000 11122 3567888888999999999998865443
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCC-------------
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHK------------- 184 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~------------- 184 (409)
......... .....++ + .++ .++++.. ++.|..+|.++|+.+..+....
T Consensus 144 ~~~~~~~~~------~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 144 QTTDPAKPY------SITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp ECSCTTSSC------BCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred ccCCCCCcc------eecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 321100000 0000011 1 134 4555543 5899999999999988764211
Q ss_pred ------------------CCeEEEEEeCCCCcEEEEeeCCCe-------------------EEEecccccccCCceeeee
Q 015301 185 ------------------SDVNTVCFADETGHLIFSGSDDSL-------------------CKVWDRRCFISKGRANGVL 227 (409)
Q Consensus 185 ------------------~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~ 227 (409)
.....+++. +...+++.++.++. |.-+|.+ +++....+
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----tG~~~W~~ 286 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----TGKLAWHY 286 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEEEE
T ss_pred cccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----CCceeeEe
Confidence 011246777 66678888876663 8888864 66665554
Q ss_pred ec--cc-------cceeEEEEcCCCC---eEEEEeCCCcEEEeeCCCCcccccccccccccccccc-------ccccccc
Q 015301 228 MG--HL-------EGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYR-------WMEYPSY 288 (409)
Q Consensus 228 ~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 288 (409)
.. |. .+.....+..+|+ .++.++.+|.+.++|..+++......... ..|... .+.....
T Consensus 287 ~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~d~~~g~p~~~~~~ 364 (668)
T 1kv9_A 287 QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK--VTWAEKVDLATGRPVEAPGV 364 (668)
T ss_dssp ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CCSEEEECTTTCCEEECTTT
T ss_pred ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc--cccccccccccCCccccccc
Confidence 43 21 2222223334565 68889999999999998876543221111 011100 0000000
Q ss_pred ceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEE------------------------------------Ee
Q 015301 289 ARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYT------------------------------------GS 332 (409)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------------------------~~ 332 (409)
. ...+....+.+..... ....++++|+..++++ ..
T Consensus 365 ~-----~~~~~~~~~p~~~G~~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 365 R-----YEKEPIVMWPSPFGAH----NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp T-----CSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred c-----ccCCeeEECCCCcccc----CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 0 0000000000000000 0001234444333332 12
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+|.|..||+.+++.+.+.+.+ .+.....+...+.+++.++.||.|+.||..+++..
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 3488999999999998877643 34444556667788999999999999999887653
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.13 E-value=7.1e-08 Score=80.57 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=122.8
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc-----------------cccceEEEEEeCC-CC
Q 015301 36 VDGMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK-----------------ALRWTITDTSLSP-DQ 97 (409)
Q Consensus 36 l~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~s~-~~ 97 (409)
+.+.-....+++++++|+++.++..++.|..|+..++.. ....... .....+..+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 333334567888999999788888889999999876522 2111100 0113578899998 55
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEe--------------
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGS-------------- 162 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-------------- 162 (409)
+ |.++...+.|..+|..++.......... . ........+++.+ +|+..++-..
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~---~--------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHATQLATSVD---G--------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEECEEEESEET---T--------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred c-EEEEECCCCEEEEeCCCCEEEEecccCC---C--------CcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 5 5555545568888876554322111100 0 0011367899999 8876555322
Q ss_pred ---cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCceeeeeeccccceeEEE
Q 015301 163 ---DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMGHLEGITFID 238 (409)
Q Consensus 163 ---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (409)
++.|..+|..+++...... .......++++ ++++.|+.+ ...+.|..|++... .......+....+ ...++
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~--~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGP--KKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEE-EESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSST--TTTCEEEEEECSS-EEEEE
T ss_pred cCCCceEEEEeCCCCEEEEecc-CCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCC--cCCccceEEeCCC-CCCeE
Confidence 3678999987776433222 12345679999 787755544 56688999997521 1011111111223 67889
Q ss_pred EcCCCCeEEEEeC----------CCcEEEeeC
Q 015301 239 SRRDGRYFISNGK----------DQTTKLWDI 260 (409)
Q Consensus 239 ~~~~~~~l~~~~~----------dg~i~iwd~ 260 (409)
+.++|++.++... .+.|..+|.
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence 9999986666544 355666664
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.13 E-value=1e-06 Score=71.36 Aligned_cols=233 Identities=7% Similarity=-0.048 Sum_probs=134.2
Q ss_pred cEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-cCeEEEEECCCCee
Q 015301 98 RFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-DNFIYVYDLQANKC 176 (409)
Q Consensus 98 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~ 176 (409)
.+|+.+.. +.|+.+++................ ....+..++|++++..|+.+.. ++.|..+++.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~----------~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~ 70 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI----------PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE----------EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecC----------CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc
Confidence 45666553 578888887654321110000000 0114788999997666665554 67999999976654
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEeC---C
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNGK---D 252 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~---d 252 (409)
...+.........+++.|..+.++++-...+.|.++++. +.....+ .........++++|++..|+.+.. .
T Consensus 71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-----g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-----CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 433433335789999994345566666667899999864 1111122 112245688999997665555443 3
Q ss_pred CcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-
Q 015301 253 QTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG- 331 (409)
Q Consensus 253 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~- 331 (409)
+.|..+++.... ...+... . ......++++++++.|+.+
T Consensus 146 ~~I~~~~~dg~~-----------------------------------~~~~~~~-~----~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 146 PKIETSHMDGTN-----------------------------------RRILAQD-N----LGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp CEEEEEETTSCC-----------------------------------CEEEECT-T----CSCEEEEEEETTTTEEEEEE
T ss_pred cEEEEEecCCCC-----------------------------------cEEEEEC-C----CCCCcEEEEcCCCCEEEEEE
Confidence 577777765311 1111000 0 0122345788876665554
Q ss_pred eCCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 332 SSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 332 ~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
...+.|.++|.........+.. ......++.. .+.++++....+.|.++|..+++
T Consensus 186 ~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 186 AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence 4568999999876544333332 2233566654 34444555566899999987654
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.12 E-value=1e-07 Score=75.62 Aligned_cols=196 Identities=9% Similarity=0.038 Sum_probs=130.4
Q ss_pred CeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 42 RVYTSQFSNDGSFFVAASQ--ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
....++|+|++.++++.+. ++.|.+.|+.+++.+.... ...+. ....+++.. +...++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~~-fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDSY-FGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTTC-CEEEEEEET-TEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCCc-ceEEEEEeC-CEEEEEEecCCEEEEEECCCCcE
Confidence 3679999998755555543 5789999999996665533 22211 233455542 34444455788999999988765
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCC-----CCeEEEEEeC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFAD 194 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~ 194 (409)
....... .. ....++++|+.++++..++.|.++|.++.+.+..+.... ..++.+.|.
T Consensus 99 ~~~i~~g-~~----------------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 99 IKNFTHQ-MK----------------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp EEEEECC-SS----------------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEECC-CC----------------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 4332221 00 012345578888877778999999999988887775321 246788887
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeecc-------------ccceeEEEEcCCCCeE-EEEeCCCcEEEeeC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------------LEGITFIDSRRDGRYF-ISNGKDQTTKLWDI 260 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~ 260 (409)
++.+++....++.|.+.|.. +++....+... ......++|+|+++.+ +++...+.+...++
T Consensus 161 -dg~lyvn~~~~~~V~vID~~----tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAK----DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETT----TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECC----CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 56666655568899999965 66666655432 1356899999998755 45556788888888
Q ss_pred CCC
Q 015301 261 RKM 263 (409)
Q Consensus 261 ~~~ 263 (409)
...
T Consensus 236 ~~~ 238 (266)
T 2iwa_A 236 HLV 238 (266)
T ss_dssp EEC
T ss_pred ecc
Confidence 763
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=7.2e-08 Score=88.57 Aligned_cols=165 Identities=10% Similarity=0.103 Sum_probs=96.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccc-cceEEEEEeCC--CCcEEEEEec------CCEEEEEEcCCCccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKAL-RWTITDTSLSP--DQRFLVYASI------CAIVNIVDVGSSARESL 122 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~~~~~------dg~i~~w~~~~~~~~~~ 122 (409)
+..+++++.|+.|..+|..+++.+......... ...+ .-+| .+..++++.. +|.|..+|..+++....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~---~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI---TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC---CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCccee---cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 567888888999999999999776554332100 0011 1111 1334555543 58999999999886544
Q ss_pred cceeceeeeeee--------ecCCC--------CcceeeEEEEEcCCCCeEEEEEecC-------------------eEE
Q 015301 123 ANVTEIHKGLDF--------SADGD--------EDEFGIFSVKFSTDGQELVAAGSDN-------------------FIY 167 (409)
Q Consensus 123 ~~~~~~~~~~~~--------~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~-------------------~i~ 167 (409)
...........+ .+... ........+++.|+...++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 322100000000 00000 0011123467888888888887665 499
Q ss_pred EEECCCCeeeeEEcC--CC-------CCeEEEEEeCCCCc---EEEEeeCCCeEEEecccccccCCcee
Q 015301 168 VYDLQANKCSLRIPA--HK-------SDVNTVCFADETGH---LIFSGSDDSLCKVWDRRCFISKGRAN 224 (409)
Q Consensus 168 v~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 224 (409)
.+|..+++.+..++. |. .++....+. .+++ .++.++.+|.++++|.+ +++.+
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l 337 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRT----NGKLI 337 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECC----CCCEe
Confidence 999999999887754 22 222222222 2454 68899999999999964 55544
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.10 E-value=1.3e-07 Score=79.05 Aligned_cols=253 Identities=8% Similarity=-0.020 Sum_probs=145.2
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeee----cCCCCcceeeEEEEEcC-CCCeEEEEE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFS----ADGDEDEFGIFSVKFST-DGQELVAAG 161 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~ 161 (409)
...+++|+++++++.++..++.|..|+..++.................. .........+..+++.+ +++ |+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 3566889999987888888999999988765432111000000000000 00000012478899997 554 55565
Q ss_pred ecCeEEEEECCCCeeeeEE---cC-CCCCeEEEEEeCC-CCcEEEEeeC-----------------CCeEEEeccccccc
Q 015301 162 SDNFIYVYDLQANKCSLRI---PA-HKSDVNTVCFADE-TGHLIFSGSD-----------------DSLCKVWDRRCFIS 219 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~---~~-~~~~v~~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~~~ 219 (409)
..+.|..+|..+++..... .+ .......+++. + ++++.++-.. ++.|..+|..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~---- 173 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS---- 173 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT----
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCC----
Confidence 5566888987765432211 11 12356889998 6 7777766432 3668888742
Q ss_pred CCceeeeeeccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 220 KGRANGVLMGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
.+.. ..+.........++++|+++.|+.+ ...+.|..|++..... .
T Consensus 174 ~~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--------------------------------~ 220 (322)
T 2fp8_A 174 TKET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--------------------------------G 220 (322)
T ss_dssp TTEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--------------------------------T
T ss_pred CCEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--------------------------------C
Confidence 2222 2222222345679999999866555 5568899999865210 0
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC----------CCeEEEEEccCCceEEEeccCC----cceeeeEEe
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS----------DNSVYIYDLVSGAQVAKLDFHN----APVRDCCWH 364 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~----~~v~~~~~s 364 (409)
....+.... . ...++++++|++.++... .+.|..+|. .++.+..+.... ..++.+++
T Consensus 221 ~~~~~~~~~------g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 221 TAEVLVKIP------N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp CEEEEEECS------S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-
T ss_pred ccceEEeCC------C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-
Confidence 001111000 0 123467788887766544 467888886 577777765432 34666766
Q ss_pred cCcCeEEeecCCCeEEEEecCCC
Q 015301 365 PIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 365 ~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.+++++++...++.|.++++...
T Consensus 292 ~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 292 HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ETTEEEEECSSCSEEEEEEC---
T ss_pred eCCEEEEeecCCCceEEEecccc
Confidence 46666666667889999998643
No 248
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.10 E-value=8.9e-09 Score=94.74 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=75.7
Q ss_pred EEEECC-CCCEEEEEeCCC-----------cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec-CCEEEE
Q 015301 45 TSQFSN-DGSFFVAASQES-----------NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI-CAIVNI 111 (409)
Q Consensus 45 ~~~~s~-~~~~l~t~~~d~-----------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~~ 111 (409)
++++.| +|++++.|+.+. .+.+||..++.-.........+.....++++.++++.+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887543 5889998877322111111111112334677889999999984 458999
Q ss_pred EEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ec-----CeEEEEECCCCeeee
Q 015301 112 VDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SD-----NFIYVYDLQANKCSL 178 (409)
Q Consensus 112 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~v~d~~~~~~~~ 178 (409)
||..+.+......+... ..-.+++..++++.++.|+ .+ ..+.+||..+++...
T Consensus 270 yd~~t~~W~~~~~~~~~--------------R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA--------------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp EEGGGTEEEECCCCSSC--------------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred ecCcCCceeECCCCCcc--------------ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence 99987654433221111 0123455667899999988 33 579999998876443
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=5.1e-08 Score=85.47 Aligned_cols=197 Identities=13% Similarity=0.081 Sum_probs=127.7
Q ss_pred EEEECC-----CCCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEe-C-CCCcEEEEEe------------
Q 015301 45 TSQFSN-----DGSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSL-S-PDQRFLVYAS------------ 104 (409)
Q Consensus 45 ~~~~s~-----~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------ 104 (409)
....|. ||++|..... +..|.+.|+++.+....+ .... ...+..+++ + |+++++++++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 355555 8888877655 567999999998655533 2221 125788887 5 9999998884
Q ss_pred ------cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC--------------
Q 015301 105 ------ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN-------------- 164 (409)
Q Consensus 105 ------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------- 164 (409)
.++.+.+.|..+.+......... ....++++|+|+++++.+.+.
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg----------------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG----------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS----------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC----------------CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 34578899998765543333211 123466788888877776432
Q ss_pred ------------------------eEEEEECCC--Cee-eeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCeEEEecccc
Q 015301 165 ------------------------FIYVYDLQA--NKC-SLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLCKVWDRRC 216 (409)
Q Consensus 165 ------------------------~i~v~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 216 (409)
.|.+.|..+ ++. +..++. .....++.++ |+++++++++ .+.+|.++|+..
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGG
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECcc
Confidence 477778776 444 444543 2355788999 7888666554 678999999763
Q ss_pred ccc--------CCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 217 FIS--------KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 217 ~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
... ........ .-......++|+|+|...++...|+.|.+||+..
T Consensus 309 ~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 309 FDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 210 00112222 2234578899999995445566799999999875
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.07 E-value=1.5e-07 Score=84.52 Aligned_cols=198 Identities=11% Similarity=0.103 Sum_probs=114.1
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeeeeeeeeccccc--------ceEEEEEeCCCCcE----EEEEecCCEEEEEEcCCC
Q 015301 52 GSFFVAASQ-ESNIKVYNV-DKNWKIQKDIETKALR--------WTITDTSLSPDQRF----LVYASICAIVNIVDVGSS 117 (409)
Q Consensus 52 ~~~l~t~~~-d~~i~vw~~-~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~----l~~~~~dg~i~~w~~~~~ 117 (409)
+..+++++. ++.|.-+|. .+++.+.+........ .....++++|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 455666666 788999999 8886665543221100 00122445443444 788888999999999998
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEE-EEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCCC----
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFS-VKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD---- 186 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~---- 186 (409)
+............. ..+.+ ..+ .++ .+++++. ++.|+.+|.++|+.+.++......
T Consensus 142 ~~~W~~~~~~~~~~-----------~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 142 ETVWKVENSDIKVG-----------STLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp CEEEEEECCCGGGT-----------CBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CEEEeecCCCCCcc-----------ceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 86543332210000 00110 011 144 4555543 789999999999988776432111
Q ss_pred ---------------------------------e-EEEEEeCCCCcEEEEeeCC----------------CeEEEecccc
Q 015301 187 ---------------------------------V-NTVCFADETGHLIFSGSDD----------------SLCKVWDRRC 216 (409)
Q Consensus 187 ---------------------------------v-~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~ 216 (409)
+ ..+++. +...+++.+..+ +.|.-+|.+
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~- 286 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD- 286 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-
Confidence 0 134555 455667766654 378888864
Q ss_pred cccCCceeeeeeccc----------cceeEEEEc-CCC---CeEEEEeCCCcEEEeeCCCCccccc
Q 015301 217 FISKGRANGVLMGHL----------EGITFIDSR-RDG---RYFISNGKDQTTKLWDIRKMSSNTT 268 (409)
Q Consensus 217 ~~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 268 (409)
+++..-.+.... .++. +... .+| ..++.++.+|.+.++|.++++....
T Consensus 287 ---TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 287 ---TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp ---TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ---CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 555554443321 1121 2222 467 4677788999999999988765443
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.05 E-value=1.9e-07 Score=83.96 Aligned_cols=311 Identities=10% Similarity=0.037 Sum_probs=163.0
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeeeeeeeeccccc-c------e-EEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 52 GSFFVAASQ-ESNIKVYNV-DKNWKIQKDIETKALR-W------T-ITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 52 ~~~l~t~~~-d~~i~vw~~-~~~~~~~~~~~~~~~~-~------~-v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
+..+++++. ++.|.-+|. .+++.+.+........ . . -..++. .+..+++++.|+.+..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 788999999 8886665532211100 0 0 011122 35678888889999999999987654
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe------cCeEEEEECCCCeeeeEEcCCCCC---------
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS------DNFIYVYDLQANKCSLRIPAHKSD--------- 186 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~--------- 186 (409)
........... .....++ .. ++ .+++++. ++.|..+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~------~~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~ 207 (571)
T 2ad6_A 140 EVEVCDPKVGS------TLTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDF 207 (571)
T ss_dssp EEECCCGGGTC------BCCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred EecCCCCCccc------eeccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccc
Confidence 33322110000 0000011 11 34 4556654 689999999999988776432110
Q ss_pred -----------------------------eEEEEEeCCCCcEEEEeeCC----------------CeEEEecccccccCC
Q 015301 187 -----------------------------VNTVCFADETGHLIFSGSDD----------------SLCKVWDRRCFISKG 221 (409)
Q Consensus 187 -----------------------------v~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~ 221 (409)
...+++. +....++.++.+ +.|..+|.+ ++
T Consensus 208 ~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----tG 282 (571)
T 2ad6_A 208 NSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----TG 282 (571)
T ss_dssp TTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----TC
T ss_pred ccccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----CC
Confidence 0135566 444556555432 358888864 55
Q ss_pred ceeeeeecc----------ccceeEEEEcCCCC---eEEEEeCCCcEEEeeCCCCccccccccccccccccccccccccc
Q 015301 222 RANGVLMGH----------LEGITFIDSRRDGR---YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSY 288 (409)
Q Consensus 222 ~~~~~~~~~----------~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
+........ ..++. +....+|+ .++.++.+|.+.++|..+++.......... ..|... +... .
T Consensus 283 ~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~-~~w~~~-~d~~-~ 358 (571)
T 2ad6_A 283 MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA-VNVFKK-VDLK-T 358 (571)
T ss_dssp CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT-CCSEEE-ECTT-T
T ss_pred cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC-cccccc-cccc-C
Confidence 555444321 12221 22224674 567788899999999988665433221100 000000 0000 0
Q ss_pred ceeccc------cCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEe------------------------------
Q 015301 289 ARRLKH------PHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS------------------------------ 332 (409)
Q Consensus 289 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~------------------------------ 332 (409)
...+.. +.........+.... .....++++|+..+|++..
T Consensus 359 g~p~~~~~~~~~~~~~~~~~~P~~~Gg----~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 434 (571)
T 2ad6_A 359 GTPVRDPEFATRMDHKGTNICPSAMGF----HNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp CSEEECGGGCCCTTCCEEEESSCTTCS----SCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred CceecccccCCCCCCCceEECCCCccc----cCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence 000000 000000000000000 0001234555555555442
Q ss_pred -------CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 333 -------SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 333 -------~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
.+|.|..||..+++.+.++... ..+........+..++.++.||.|+.||..+++..
T Consensus 435 ~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 3588999999999998887632 33444444445667777899999999999887654
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=6e-06 Score=77.86 Aligned_cols=283 Identities=9% Similarity=-0.025 Sum_probs=162.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeee------ecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDI------ETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
...|.++...++|. |..|+.++-|..++........... ...-....|.++...+++.+. +|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence 46799999999887 4556655668888876542211100 011123469999998887755 466566688888
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc--CCCCCeEEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP--AHKSDVNTVC 191 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~ 191 (409)
..++......... ......|.++...+++. |.+|+.++-+..+|..+++...... .....|.++.
T Consensus 390 ~~~~~~~~~~~~~------------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 390 NGKRVAIYNKENR------------ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY 456 (781)
T ss_dssp TTEEEEECC-----------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE
T ss_pred CCCCeEEEccCCC------------CCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE
Confidence 7655432211000 01123588998887776 5557666679999987776433221 2346788888
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec-----cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG-----HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSN 266 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 266 (409)
.. +++.+ ..|+. +-+..+|.. .......... ....|.++...++|.+.+ ++.++-|..||..+..
T Consensus 457 ~d-~~g~l-wigt~-~Gl~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~-- 526 (781)
T 3v9f_A 457 ED-KNKKI-WIGTH-AGVFVIDLA----SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL-- 526 (781)
T ss_dssp EC-TTSEE-EEEET-TEEEEEESS----SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE--
T ss_pred EC-CCCCE-EEEEC-CceEEEeCC----CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe--
Confidence 87 56654 44555 558888854 2222111111 135688998888887554 5553447888875521
Q ss_pred ccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 267 TTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
+..+...... ....+.++..+++|.+.++ +.+|.|..||..+++
T Consensus 527 ---------------------------------~~~~~~~~~l--~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 527 ---------------------------------VRKFNQYEGF--CSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp ---------------------------------EEEECTTTTC--SCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred ---------------------------------EEEccCCCCC--CCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 1111110000 0112334455666775544 447765888887665
Q ss_pred eEEEecc----CCcceeeeEEecCcCeEEeecCCCeEEEEecCC
Q 015301 347 QVAKLDF----HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPG 386 (409)
Q Consensus 347 ~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 386 (409)
.. .+.. ....|.++...++|.+.+++ .+| |..++..+
T Consensus 571 ~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 571 YQ-VFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSK 611 (781)
T ss_dssp CE-EECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTT
T ss_pred EE-EccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCC
Confidence 32 3321 12467888888888766654 445 66666554
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.03 E-value=1.8e-06 Score=68.10 Aligned_cols=210 Identities=10% Similarity=0.142 Sum_probs=132.9
Q ss_pred eeecCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVD 113 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~ 113 (409)
.+.|-.+.+..++|+|+++.|+ +...++.|...|.. +..+. .....+. .....+++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~-~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIR-TIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEE-EEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEE-EEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3445557899999999876555 56677888888887 43333 3333322 3578889999988777766778899998
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC---CCeeeeEE-------cCC
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ---ANKCSLRI-------PAH 183 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~-------~~~ 183 (409)
+........... ..+.............++|+|.++.|+++.......+|.+. ....+..+ ..+
T Consensus 98 v~~~~~i~~~~~------~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 98 LTPNSEVKILKK------IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp ECTTCCEEEEEE------EECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred cCCCCeeeeeee------eccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 876542111110 00100011223457899999999888887775555555543 11112222 123
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc---------ccceeEEEEcCCCCeEEEEeCCCc
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH---------LEGITFIDSRRDGRYFISNGKDQT 254 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~ 254 (409)
...+.+++++|..+++++.......+.++|.. +.....+.-. -.....|+|.++|++.++ ++.+.
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~ 245 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR 245 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce
Confidence 44678999998888888888889999999963 3333333221 125689999999985554 66665
Q ss_pred EEEee
Q 015301 255 TKLWD 259 (409)
Q Consensus 255 i~iwd 259 (409)
+..+.
T Consensus 246 ~y~f~ 250 (255)
T 3qqz_A 246 FYRFT 250 (255)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.02 E-value=1.8e-07 Score=73.27 Aligned_cols=185 Identities=13% Similarity=0.076 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCeEEEEEecC--eEEEEECCCCeeeeEEcCCCCC-eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 145 IFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.|+ ++.++.+.+.+| .|+++|+++++.+..+...... -..++.. ++.+.+..-.++.+.+||.. +.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~----t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR----NL 117 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----TC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECc----cC
Confidence 5678888 666666777655 8999999999998888643322 2335554 34444455568999999964 66
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+.... ....++++++.|+.+..++.|.++|..+.+.. .
T Consensus 118 ~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~----------------------------------~ 160 (262)
T 3nol_A 118 RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPV----------------------------------R 160 (262)
T ss_dssp CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEE----------------------------------E
T ss_pred cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEE----------------------------------E
Confidence 6666665432 22233456777777776788999998874322 1
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC------------CcceeeeEEecCcCe
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH------------NAPVRDCCWHPIYPM 369 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~ 369 (409)
.+.-....... .....+.+. +|++.+..-.++.|.+.|..+++.+..+... ....+.|+|+|+++.
T Consensus 161 ~I~V~~~g~~~-~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 161 TITVTAHGEEL-PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp EEECEETTEEC-CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred EEEeccCCccc-cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 11111000000 000012233 5766666667889999999999998887532 124588999999886
Q ss_pred EEeecC
Q 015301 370 LISSSW 375 (409)
Q Consensus 370 l~s~~~ 375 (409)
|+..+.
T Consensus 239 lfVTGK 244 (262)
T 3nol_A 239 LFVTGK 244 (262)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 666654
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=2e-05 Score=74.23 Aligned_cols=280 Identities=9% Similarity=0.037 Sum_probs=157.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee-cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE-TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
...|.++...++|.+. .|+.++-|..|+..++.. ..... .......|.++...+++.+.+ |+.++.+..++..+++
T Consensus 362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK 438 (781)
T ss_dssp SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE
T ss_pred CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc
Confidence 3569999999888754 455455588898765421 11110 111234699999888887655 6666778888887665
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-----CCCeEEEEEe
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-----KSDVNTVCFA 193 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~ 193 (409)
....... ......|.++...+++. |..|+. +-|..+|..+++........ ...|.++...
T Consensus 439 ~~~~~~~-------------~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 439 FQIIELE-------------KNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp EEECCST-------------TTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred EEEeccC-------------CCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence 4322110 01122588888888876 455555 56999998876654332222 4678899887
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeec----cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccc
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG----HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTD 269 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 269 (409)
+++.+.+ |+.++-+..+|.. ... ...+.. ....|.++...++|.+.+ ++.+|-+..||..+..
T Consensus 504 -~~g~lWi-gt~~~Gl~~~~~~----~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~----- 570 (781)
T 3v9f_A 504 -SEGRFWI-GTFGGGVGIYTPD----MQL-VRKFNQYEGFCSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFD----- 570 (781)
T ss_dssp -TTCCEEE-EESSSCEEEECTT----CCE-EEEECTTTTCSCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCC-----
T ss_pred -CCCCEEE-EEcCCCEEEEeCC----CCe-EEEccCCCCCCCCeeEEEEECCCCCEEE-EECCCceEEECCCCCc-----
Confidence 6666554 4443347778853 222 222211 235688888888887555 4446654888876522
Q ss_pred cccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEE
Q 015301 270 NSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVA 349 (409)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~ 349 (409)
+..+....... ...+.++..+++|.+.++ +.+| |..|+..+.+. .
T Consensus 571 ------------------------------~~~~~~~~gl~--~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~-~ 615 (781)
T 3v9f_A 571 ------------------------------YQVFQRKEGLP--NTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCF-Y 615 (781)
T ss_dssp ------------------------------CEEECGGGTCS--CCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEE-E
T ss_pred ------------------------------EEEccccCCCC--CceEEEEEECCCCCEEEE-cCCc-eEEEECCCCce-E
Confidence 11111111000 001123345556765544 4555 77788765543 3
Q ss_pred EeccCCc------ceeeeEEecCcCeEEeecCCCeEEEEecCCC
Q 015301 350 KLDFHNA------PVRDCCWHPIYPMLISSSWDCNIVRWEIPGI 387 (409)
Q Consensus 350 ~~~~~~~------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 387 (409)
.+....+ ...++...++|.+++ |+.+| +..++....
T Consensus 616 ~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 616 TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPDIA 657 (781)
T ss_dssp EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSCCG
T ss_pred EecccCCccccccccCceEECCCCEEEE-ECCCc-eEEEChhhc
Confidence 3322111 124566677777555 55667 556665543
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.98 E-value=1.4e-06 Score=72.03 Aligned_cols=227 Identities=7% Similarity=-0.023 Sum_probs=132.1
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--C
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--N 164 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~ 164 (409)
....++|+++++.+++-..++.|..||....... .... ...+..+++.++|+++++.... .
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~-~~~~----------------~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-HATV----------------EGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-EEEC----------------SSEEEEEEECTTSCEEEEEECTTSC
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCceEE-EEeC----------------CCCceeEEEcCCCcEEEEeccCCcc
Confidence 5778999999987776667899999987653211 1100 1147889999999855544332 2
Q ss_pred eEEEEECCCCeeeeEEc-CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc-eee---------eeeccccc
Q 015301 165 FIYVYDLQANKCSLRIP-AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR-ANG---------VLMGHLEG 233 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---------~~~~~~~~ 233 (409)
.|..+|..+++...... ........++.. +++..+++-..++.|..+|.. .+. .+. ........
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~----~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVV----QPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETT----TTEEEEEEECGGGSCSSTTCCSCS
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCC----CCcEeEEEECCccccccccCCCCc
Confidence 47777877776543322 122334555554 455555555568888888853 111 110 00011123
Q ss_pred eeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeee
Q 015301 234 ITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTL 312 (409)
Q Consensus 234 v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (409)
...+ +++++.|+.+ ...+.|..+++...... .....+...
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-------------------------------~~~~~~~~~------ 211 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-------------------------------GEPEIFVEQ------ 211 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-------------------------------CCCEEEEES------
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-------------------------------CccEEEecc------
Confidence 3445 7788766554 45678999998641000 000000000
Q ss_pred eEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceE--EEeccCCcceeeeEEe---cCcCeEEeecCC
Q 015301 313 IRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQV--AKLDFHNAPVRDCCWH---PIYPMLISSSWD 376 (409)
Q Consensus 313 ~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~v~~~~~s---~~~~~l~s~~~d 376 (409)
.....++++++|+++++....+.|.++|.. ++.. ..+.......++++|. |+++.|+.++..
T Consensus 212 -~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 212 -TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 011234678889887777778899999974 6553 2344333568899998 887766655443
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=4e-06 Score=75.42 Aligned_cols=167 Identities=12% Similarity=0.068 Sum_probs=91.9
Q ss_pred EEECCCCCE----EEEEeCCCcEEEEEcCCCeeeeeeeeccc-ccceEEE-EEeCCCCcEEEEEe------cCCEEEEEE
Q 015301 46 SQFSNDGSF----FVAASQESNIKVYNVDKNWKIQKDIETKA-LRWTITD-TSLSPDQRFLVYAS------ICAIVNIVD 113 (409)
Q Consensus 46 ~~~s~~~~~----l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~~v~~-~~~s~~~~~l~~~~------~dg~i~~w~ 113 (409)
++++|.+.. +++++.|+.+.-+|..+++.+.+...... ....+.+ .... ++ .+++++ .+|.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 445444444 78888899999999999976655332110 0001110 0111 34 455554 378999999
Q ss_pred cCCCccccccceeceeeeeeeecC-----------------CCC----c-ceee-EEEEEcCCCCeEEEEEec-------
Q 015301 114 VGSSARESLANVTEIHKGLDFSAD-----------------GDE----D-EFGI-FSVKFSTDGQELVAAGSD------- 163 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~----~-~~~v-~~~~~~~~~~~l~~~~~d------- 163 (409)
..+++..-............+.+. ..+ + ...+ ..+++.++...++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 999876543332211100000000 000 0 0001 134566667777777654
Q ss_pred ---------CeEEEEECCCCeeeeEEcCCCC----------CeEEEEEeCCCC---cEEEEeeCCCeEEEeccc
Q 015301 164 ---------NFIYVYDLQANKCSLRIPAHKS----------DVNTVCFADETG---HLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 164 ---------~~i~v~d~~~~~~~~~~~~~~~----------~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~ 215 (409)
+.|..+|.++++.+..++.... ++. +.....++ ..++.++.+|.+.++|.+
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~ 341 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRT 341 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECC
Confidence 3899999999999877754221 121 22211345 567788899999999965
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.96 E-value=1.6e-07 Score=73.57 Aligned_cols=181 Identities=10% Similarity=0.084 Sum_probs=119.7
Q ss_pred eEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCcc
Q 015301 43 VYTSQFSNDGSFFVAASQES--NIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSAR 119 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~ 119 (409)
...+.|+ ++.++.+.+.+| .|+++|+++++.+.... ..... --..+++. +..|. ..-.++.+.++|..+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~~~-FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGKRY-FGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCTTC-CEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCCcc-ceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 4788998 677677777766 89999999996665543 22211 11224443 44444 445688999999998876
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC--C---CCeEEEEEeC
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH--K---SDVNTVCFAD 194 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~---~~v~~~~~~~ 194 (409)
........ ....++++++.|+.+..++.|.++|.++.+.+..+... . ..++.+.|.
T Consensus 120 ~~ti~~~~------------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 120 VRSFNYDG------------------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp EEEEECSS------------------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEECCC------------------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 54433211 11223357777777766788999999999888876532 1 345568886
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeecc------------ccceeEEEEcCCCCeEEEEeCC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH------------LEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d 252 (409)
++.+.+..-.++.|.+.|.+ +++....+... ....+.|+++|+++.|++.+..
T Consensus 181 -~G~lyan~w~~~~I~vIDp~----tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPE----TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTT----TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEEccCCeEEEEECC----CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 56666666678899999965 55555554321 2356899999998888777654
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=2.1e-06 Score=77.30 Aligned_cols=303 Identities=8% Similarity=-0.037 Sum_probs=148.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCC--CCcEEEEEec------CCEEEEEEcCCCcccccc
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSP--DQRFLVYASI------CAIVNIVDVGSSARESLA 123 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~~w~~~~~~~~~~~ 123 (409)
+..+++++.|+.+..+|..+++.+.+..... +... ..+.-+| .+..+++++. ++.|..+|..+++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5567788889999999999997665533211 1000 0011112 1334555554 789999999998765433
Q ss_pred ceeceeeeeeeec-----------------CCC------CcceeeEEEEEcCCCCeEEEEEec----------------C
Q 015301 124 NVTEIHKGLDFSA-----------------DGD------EDEFGIFSVKFSTDGQELVAAGSD----------------N 164 (409)
Q Consensus 124 ~~~~~~~~~~~~~-----------------~~~------~~~~~v~~~~~~~~~~~l~~~~~d----------------~ 164 (409)
............+ ... +....-..+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 2211100000000 000 000001235566666666666532 3
Q ss_pred eEEEEECCCCeeeeEEcCC--CC----CeEE---EEEeCCCC---cEEEEeeCCCeEEEecccccccCCceeeeeeccc-
Q 015301 165 FIYVYDLQANKCSLRIPAH--KS----DVNT---VCFADETG---HLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL- 231 (409)
Q Consensus 165 ~i~v~d~~~~~~~~~~~~~--~~----~v~~---~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 231 (409)
.|..+|.++++.+..++.. .. .+.. +... .++ ..++.++.+|.+.++|.. +++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQP-VNGKMTPLLSHIDRNGILYTLNRE----NGNLIVAEKVDPA 347 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-ETTEEEEEEEEECTTSEEEEEETT----TCCEEEEEESSTT
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecc-cCCcEEEEEEEeCCCcEEEEEECC----CCCEEeeecccCC
Confidence 6999999999988877532 11 1111 2221 355 367788899999999964 444443322110
Q ss_pred ------------cce--------------------------eEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccc
Q 015301 232 ------------EGI--------------------------TFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRL 273 (409)
Q Consensus 232 ------------~~v--------------------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 273 (409)
.++ ..++++|+..++++...+....++........... .
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~---~ 424 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQF---F 424 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC---C
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCc---c
Confidence 011 23567888788877766544444433221000000 0
Q ss_pred cccccccccc------cccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce
Q 015301 274 RDYDWDYRWM------EYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ 347 (409)
Q Consensus 274 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 347 (409)
....+..... ........+....++.+-.+..... .....+...+..++.++.||.|+.+|.++++.
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-------CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-------ccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 0000000000 0000011111111222222211110 01111222366788899999999999999999
Q ss_pred EEEeccCCcc-eeeeEEecCcCeEE
Q 015301 348 VAKLDFHNAP-VRDCCWHPIYPMLI 371 (409)
Q Consensus 348 ~~~~~~~~~~-v~~~~~s~~~~~l~ 371 (409)
+.+++..... -.-+.+..+++.++
T Consensus 498 lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 498 LWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEeCCCCcEeeeEEEEECCEEEE
Confidence 9888743321 12234557777433
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.94 E-value=7.2e-06 Score=73.88 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCccc
Q 015301 334 DNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEA 390 (409)
Q Consensus 334 dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 390 (409)
+|.|.-||+.+++.+.+.... .++..-.....+.+++.++.||.|+.||..++++.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 688999999999988777643 23333233334667888999999999999888764
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.94 E-value=2.5e-07 Score=72.43 Aligned_cols=182 Identities=9% Similarity=-0.015 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCe--EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDV--NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ .. ... ..+++. .+.+.+..-.++.+.+||.. +.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~----Tl~ 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGM----PPQ 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETT----TTE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECC----cCc
Confidence 4667776 4566677777889999999999988877 32 233 346654 44555556678999999964 666
Q ss_pred eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 223 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
.+..+..... -..++ ++++.|+.+..++.|.++|..+.+... .
T Consensus 128 ~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~----------------------------------~ 170 (268)
T 3nok_A 128 RERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVG----------------------------------A 170 (268)
T ss_dssp EEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEE----------------------------------E
T ss_pred EEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEE----------------------------------E
Confidence 6666654322 23444 567888877778899999988743222 1
Q ss_pred eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC-------------CcceeeeEEecCcCe
Q 015301 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-------------NAPVRDCCWHPIYPM 369 (409)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~ 369 (409)
+.-....... .....+.+. +|++.+....+..|.+.|..+++.+..+... ..-.+.|+|+|+++.
T Consensus 171 I~V~~~g~~v-~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 171 VQVKLRGQPV-ELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp EECEETTEEC-CCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred EEeCCCCccc-ccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 1111100000 001112233 5766666657889999999999998887532 135688999998775
Q ss_pred EEeec
Q 015301 370 LISSS 374 (409)
Q Consensus 370 l~s~~ 374 (409)
|+..+
T Consensus 249 lfVTG 253 (268)
T 3nok_A 249 IFMTG 253 (268)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 55554
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.91 E-value=2.9e-06 Score=70.14 Aligned_cols=195 Identities=12% Similarity=0.085 Sum_probs=115.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-C-EEEEEEcCCCc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-A-IVNIVDVGSSA 118 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g-~i~~w~~~~~~ 118 (409)
.....++|+++|+++++-..++.|..||.+... ....... ..+..+++.++++++++.... + .|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~~~---~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVE---GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECS---SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEeCC---CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 457789999999977776678899999987642 2222222 368899999999866554332 2 46667766665
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-eeEE---------cCCCCCeE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-SLRI---------PAHKSDVN 188 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~---------~~~~~~v~ 188 (409)
......... ......++..+++..+++-..++.|+.+|..+++. +... ...-....
T Consensus 107 ~~~~~~~~~--------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 107 VETLLTLPD--------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp EEEEEECTT--------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred EEEEEeCCC--------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 432211100 00123344455554444433478999999876532 1111 01112345
Q ss_pred EEEEeCCCCc-EEEEeeCCCeEEEecccccccCCce--eeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 189 TVCFADETGH-LIFSGSDDSLCKVWDRRCFISKGRA--NGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 189 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.+ + +++. ++++-...+.|..+++.. .+.. ...+. .......++++++|+++++....+.|.++|..
T Consensus 173 gi--s-~dg~~lyv~d~~~~~I~~~~~~~---~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 173 GL--K-RFGNFLYVSNTEKMLLLRIPVDS---TDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EE--E-EETTEEEEEETTTTEEEEEEBCT---TSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred Cc--C-cCCCEEEEEeCCCCEEEEEEeCC---CCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 55 5 4555 445555678999999752 1111 11111 11345678899999877776677889999854
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.90 E-value=1.1e-05 Score=72.64 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=89.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc------ccceEEEEEeC-CCCc-EEEEEe------cCCEEEEEEcCCC
Q 015301 52 GSFFVAASQESNIKVYNVDKNWKIQKDIETKA------LRWTITDTSLS-PDQR-FLVYAS------ICAIVNIVDVGSS 117 (409)
Q Consensus 52 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~------~~~~v~~~~~s-~~~~-~l~~~~------~dg~i~~w~~~~~ 117 (409)
+..++.++.|+.|.-+|..+++.+........ ...++ +.=. .+++ .+++++ .++.|..+|..++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 45677888899999999999976655432211 01111 1100 1233 555554 2789999999988
Q ss_pred ccccccceeceee----eeeeec---CC------C-------------CcceeeEEEEEcCCCCeEEEEEe---------
Q 015301 118 ARESLANVTEIHK----GLDFSA---DG------D-------------EDEFGIFSVKFSTDGQELVAAGS--------- 162 (409)
Q Consensus 118 ~~~~~~~~~~~~~----~~~~~~---~~------~-------------~~~~~v~~~~~~~~~~~l~~~~~--------- 162 (409)
+..-......... ...... .. . .....-..+++.|+..+++++..
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 7654322110000 000000 00 0 00000123567777777776663
Q ss_pred -----------c----CeEEEEECCCCeeeeEEcC--CCC----CeEE---EEEeCCCC---cEEEEeeCCCeEEEeccc
Q 015301 163 -----------D----NFIYVYDLQANKCSLRIPA--HKS----DVNT---VCFADETG---HLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 163 -----------d----~~i~v~d~~~~~~~~~~~~--~~~----~v~~---~~~~~~~~---~~l~~~~~dg~i~iwd~~ 215 (409)
| +.|..+|..+++.+..++. |.. .+.. +.....++ ..++.++.+|.++++|.+
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5899999999999887753 321 1111 12110245 478889999999999964
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.89 E-value=1.9e-05 Score=66.36 Aligned_cols=196 Identities=8% Similarity=0.024 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCcc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSAR 119 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~ 119 (409)
+..+|.+..++. +|+.+. ...|+..+++... ........ ..+..++|++.+..|..+ ...+.|..+++.....
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~-~~~~~~~~---~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSE-YTLLLNNL---ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCC-EEEEECSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCe-eEEeecCC---CceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 445677777744 444443 3458888877652 22222222 247899999876666655 4678899999876543
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCc
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
....... ......+++.+.+..|+.+ ...+.|.+.++........+...-.....+++.|.++.
T Consensus 108 ~~~~~~~---------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 108 EEVVSTG---------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp EEEECSS---------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred eEEEeCC---------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence 2211100 0135678888755555444 44678999998754433333334466799999955666
Q ss_pred EEEEeeCC-CeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 199 LIFSGSDD-SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 199 ~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
++++-... +.|..+++. +.....+ .........++++|++..|..+. ..+.|..+|+..
T Consensus 173 ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEECSSSCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 66665555 788888853 2222222 22234568899998766665554 467888888764
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=6.4e-07 Score=70.16 Aligned_cols=181 Identities=11% Similarity=0.052 Sum_probs=121.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
....+.|+ ++.++.+.+.+|.|+++|+++++.+... .... ..-..+++.. ++..+..-.++.+.+||..+.+...
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence 34688887 4566777888889999999999766665 2221 1123355543 3444445578999999999887654
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC--C---CCeEEEEEeCCC
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH--K---SDVNTVCFADET 196 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~ 196 (409)
...... .-..++ ++++.|+.+..++.|.++|.++.+.+.++... . ..++.+.|. +
T Consensus 131 ti~~~~----------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--d 190 (268)
T 3nok_A 131 TTRYSG----------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--N 190 (268)
T ss_dssp EEECSS----------------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T
T ss_pred EEeCCC----------------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--C
Confidence 433211 012333 46778887777899999999999988877532 1 245778886 6
Q ss_pred CcEEEEeeCCCeEEEecccccccCCceeeeeecc-------------ccceeEEEEcCCCCeEEEEeC
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------------LEGITFIDSRRDGRYFISNGK 251 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~ 251 (409)
+.+++....+..|.+.|.+ +++.+..+... ..-.+.|+++|+++.|++.+.
T Consensus 191 G~lyanvw~s~~I~vIDp~----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPA----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TEEEEEETTCSEEEEECTT----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CEEEEEECCCCeEEEEeCC----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6666666578899999965 56655554322 135689999998776666554
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.88 E-value=2.3e-06 Score=66.46 Aligned_cols=185 Identities=14% Similarity=0.043 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCeEEEEEec--CeEEEEECCCCeeeeEEcCCCCC-eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC
Q 015301 145 IFSVKFSTDGQELVAAGSD--NFIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG 221 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 221 (409)
...+.|++ +.++.+.+.+ ..|+.+|+++++.+..+...... -..++.. ++.+....-.++.+.+||.. +.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~----tl 95 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA----TL 95 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC----cC
Confidence 66788876 5555555554 48999999999998887643322 2345554 35555556678999999964 66
Q ss_pred ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcccee
Q 015301 222 RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLA 301 (409)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (409)
+.+..+.....+ ..++ +++..|+.+..++.|.++|..+.+...
T Consensus 96 ~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~---------------------------------- 138 (243)
T 3mbr_X 96 TPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVG---------------------------------- 138 (243)
T ss_dssp EEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEE----------------------------------
T ss_pred cEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEE----------------------------------
Confidence 666666543322 3444 567777777778899999988743322
Q ss_pred eeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccC-------------CcceeeeEEecCcC
Q 015301 302 TYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH-------------NAPVRDCCWHPIYP 368 (409)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~ 368 (409)
.+.-....... .....+.+. +|++.+....+..|.+.|..+++.+..+... ....+.|+++|+++
T Consensus 139 ~I~V~~~g~~~-~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 139 SIKVTAGGRPL-DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp EEECEETTEEC-CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred EEEEccCCccc-ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence 11111000000 001111222 5666666656789999999999998887521 12468899999877
Q ss_pred eEEeecC
Q 015301 369 MLISSSW 375 (409)
Q Consensus 369 ~l~s~~~ 375 (409)
.|+..+.
T Consensus 217 ~lfVTGK 223 (243)
T 3mbr_X 217 RLFVTGK 223 (243)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 5555543
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.88 E-value=1.9e-07 Score=87.19 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=112.9
Q ss_pred CeEEEEEC-CCCCEEEEEeC-C----CcEEEEEcCCC-eeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----CEE
Q 015301 42 RVYTSQFS-NDGSFFVAASQ-E----SNIKVYNVDKN-WKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIV 109 (409)
Q Consensus 42 ~v~~~~~s-~~~~~l~t~~~-d----~~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i 109 (409)
.+...+|| |||++||.+.. + ..|+++|++++ +.+.... ......++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-----SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-----EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-----cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 68889999 99998885533 2 25999999987 5322111 1123468899999988887765 368
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe---cCeEEEEECCCC--ee--eeEEcC
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS---DNFIYVYDLQAN--KC--SLRIPA 182 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~--~~--~~~~~~ 182 (409)
.++++.++.......... . .......+.|+|||++|+.... ...|+++|+.++ +. ......
T Consensus 250 ~~~~lgt~~~~~~lv~~~---------~---~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 317 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEE---------H---NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR 317 (751)
T ss_dssp EEEETTSCGGGCEEEEEC---------C---CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC
T ss_pred EEEECCCCchhcEEEEec---------C---CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC
Confidence 888887654321111100 0 0112467899999999887764 347889999875 22 222233
Q ss_pred CCCCeEEEEEeCCCCcEEEEeeCC--C--eEEEecccccccCCceeee-eecccc--ceeEEEEcCCCCeEEEEeCCCc-
Q 015301 183 HKSDVNTVCFADETGHLIFSGSDD--S--LCKVWDRRCFISKGRANGV-LMGHLE--GITFIDSRRDGRYFISNGKDQT- 254 (409)
Q Consensus 183 ~~~~v~~~~~~~~~~~~l~~~~~d--g--~i~iwd~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~- 254 (409)
.......+.|+ .++.+++....+ + .|..+|+. ....... +..+.. .+..+.+. .+.++++...++.
T Consensus 318 ~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~----~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~ 391 (751)
T 2xe4_A 318 EKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG----QPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLT 391 (751)
T ss_dssp CTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT----STTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEE
T ss_pred CCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC----CcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEE
Confidence 44555666665 445555555443 3 45555642 1112222 223333 34455554 2334555566775
Q ss_pred -EEEeeC
Q 015301 255 -TKLWDI 260 (409)
Q Consensus 255 -i~iwd~ 260 (409)
|.++|+
T Consensus 392 ~l~~~dl 398 (751)
T 2xe4_A 392 RIWTMMA 398 (751)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 455554
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=4e-06 Score=72.65 Aligned_cols=155 Identities=7% Similarity=0.070 Sum_probs=95.2
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC----C-EEEEEEc
Q 015301 41 SRVYTSQFSN-DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----A-IVNIVDV 114 (409)
Q Consensus 41 ~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g-~i~~w~~ 114 (409)
.....++++| ++..|..+...+.|+.+|++.+. +..... .......++|+++++.|+++... . .+..++.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 3567899998 45566666555789999988763 333222 22358899999999977666542 1 3333333
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEEc-CCCCCeEEEEE
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRIP-AHKSDVNTVCF 192 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~ 192 (409)
.+.......... ......++++| ++.++++-..++.|..++...+....... ........++|
T Consensus 213 -~g~~~~~~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 213 -ESGFKVITELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp -GGTSCSEEEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred -CCceeeeeeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 222211100000 01356788999 66655554457899999998766422222 12245689999
Q ss_pred eCCCCc-EEEEeeCCCeEEEeccc
Q 015301 193 ADETGH-LIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 193 ~~~~~~-~l~~~~~dg~i~iwd~~ 215 (409)
+ ++++ ++++-...+.|..++..
T Consensus 278 ~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 278 H-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp C-TTSSEEEEEETTTTEEEEEEEE
T ss_pred c-CCCCEEEEEECCCCEEEEEeCC
Confidence 9 7888 45555567889998864
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.84 E-value=2.9e-05 Score=64.72 Aligned_cols=280 Identities=8% Similarity=0.020 Sum_probs=143.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeee-cccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIE-TKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSAR 119 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~ 119 (409)
..+.+|.|.+++..++++ .+|.| +...+.++....... .......+.++.|.+ +..++ ++..+.|.. ..+.++.
T Consensus 36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSS
T ss_pred CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCC
Confidence 479999998888877754 56654 344444433322211 111234688999986 44444 455665433 2332322
Q ss_pred ccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe-eeeEEcCCCCCeEEEEEeCCCCc
Q 015301 120 ESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK-CSLRIPAHKSDVNTVCFADETGH 198 (409)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 198 (409)
-....... .....+..+.+.+++..++++ .++.|..- ...++ ...........+..+++. +++.
T Consensus 111 W~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~-~~~~ 175 (327)
T 2xbg_A 111 WSQIPLDP------------KLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRS-PSGE 175 (327)
T ss_dssp CEECCCCT------------TCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEEC-TTSC
T ss_pred ceECcccc------------CCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEc-CCCc
Confidence 11111000 011135667776677655554 45554322 12232 222223455678899998 6677
Q ss_pred EEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCccccccccccccccc
Q 015301 199 LIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDW 278 (409)
Q Consensus 199 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 278 (409)
+++++...+..+-.|-. ....... -......+..+.+.++++.+ .++.+|.+.+.+.....
T Consensus 176 ~~~~g~~G~~~~S~d~g--G~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~-------------- 236 (327)
T 2xbg_A 176 YVAVSSRGSFYSTWEPG--QTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE-------------- 236 (327)
T ss_dssp EEEEETTSSEEEEECTT--CSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE--------------
T ss_pred EEEEECCCcEEEEeCCC--CCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC--------------
Confidence 77666544444444410 0111222 12344577888899888755 45567777665321100
Q ss_pred ccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEecc---CC
Q 015301 279 DYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDF---HN 355 (409)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~---~~ 355 (409)
.-..+....... ...++.+.+.+++.+++++. +|.| ++....++.-..+.. ..
T Consensus 237 --------------------tW~~~~~~~~~~--~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~ 292 (327)
T 2xbg_A 237 --------------------NWGELLSPLRRN--SVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVP 292 (327)
T ss_dssp --------------------EECCCBCTTSSC--CSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSS
T ss_pred --------------------eeEeccCCcccC--CcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCC
Confidence 000000000000 00123445666677666654 6666 344555655444442 34
Q ss_pred cceeeeEEecCcCeEEeecCCCeEEEEec
Q 015301 356 APVRDCCWHPIYPMLISSSWDCNIVRWEI 384 (409)
Q Consensus 356 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 384 (409)
..+.++.|.+++. ++.++.+|.|..++-
T Consensus 293 ~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 293 SNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 5688899976554 556667898877764
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.82 E-value=5.1e-06 Score=64.55 Aligned_cols=184 Identities=10% Similarity=0.056 Sum_probs=119.8
Q ss_pred CCeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 41 SRVYTSQFSNDGSFFVAASQE--SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
.....+.|++ +.++.+.+.+ ..|+.+|+++++.+.... ..... .-..+++. .++..+..-.++.+.+||..+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~~-fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPPY-FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTTC-CEEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCCc-ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 4466889986 5666666665 489999999996665542 22211 11233443 23444455678999999999877
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCC-----CCeEEEEEe
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK-----SDVNTVCFA 193 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~ 193 (409)
......... .-..++ ++++.|+.+..++.|.++|.++.+.+.++.... ..++.+.|.
T Consensus 97 ~~~ti~~~~----------------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 97 PRARFRYPG----------------EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp EEEEEECSS----------------CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEEeCCC----------------CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 654433221 112333 467777777778999999999998888775321 355677776
Q ss_pred CCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc-------------ccceeEEEEcCCCCeEEEEeCC
Q 015301 194 DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH-------------LEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 194 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~d 252 (409)
++.+++....+..|.+.|.+ +++.+..+... ..-.+.|+++|+++.|++.+.-
T Consensus 159 --~G~lyanvw~s~~I~vIDp~----tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 159 --NGELLANVWLTSRIARIDPA----SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp --TTEEEEEETTTTEEEEECTT----TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred --CCEEEEEECCCCeEEEEECC----CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 66666666568899999965 55555544311 2356899999988877776643
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=4.3e-06 Score=72.43 Aligned_cols=154 Identities=9% Similarity=0.058 Sum_probs=95.7
Q ss_pred eEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--
Q 015301 87 TITDTSLSP-DQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-- 163 (409)
Q Consensus 87 ~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 163 (409)
....++++| ++..|.++...+.|+.+|+.++........ ......++|++++++|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------------~~~P~~ia~d~~G~~lyvad~~~~ 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------------LSKVRTICWTHEADSMIITNDQNN 201 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----------------CSCEEEEEECTTSSEEEEEECCSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----------------CCCcceEEEeCCCCEEEEEeCCCC
Confidence 467889998 466676666558899999877654322210 1147889999999977776542
Q ss_pred --C-eEEEEECCCCeee--eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee-ccccceeEE
Q 015301 164 --N-FIYVYDLQANKCS--LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-GHLEGITFI 237 (409)
Q Consensus 164 --~-~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~ 237 (409)
. .+..++. .+... ..+. .......++++|.++.++++-..++.|..++.. ......... ........+
T Consensus 202 ~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~----~~~~~~~~~~~~~~~P~gi 275 (430)
T 3tc9_A 202 NDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT----TQETTPLFTIQDSGWEFHI 275 (430)
T ss_dssp TTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT----TTEEEEEEECSSSSCCEEE
T ss_pred cccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEEcCCCCcceeE
Confidence 1 3444443 33222 2222 123457788984377777777778899999964 222211111 112346789
Q ss_pred EEcCCCCeEE-EEeCCCcEEEeeCCC
Q 015301 238 DSRRDGRYFI-SNGKDQTTKLWDIRK 262 (409)
Q Consensus 238 ~~~~~~~~l~-~~~~dg~i~iwd~~~ 262 (409)
+++|++++|+ +-...+.|..++...
T Consensus 276 a~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 9999999554 445577899887653
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.77 E-value=2.3e-05 Score=66.89 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=143.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCcccc
Q 015301 43 VYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARES 121 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~ 121 (409)
-.|.+..+. .+|+.+. ...|+..+++.... ....... ..+..++|++.+..|..+ ...+.|..++........
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~-~~~~~~~---~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEY-TLLLNNL---ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCC-EEEECSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcE-EEEecCC---CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 445555553 3444443 35688888876532 2222222 257899999866655555 467889999987654322
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
..... ......+++.+.+..|+.+ ...+.|.+.++........+.........+++.|.++.++
T Consensus 153 ~~~~~---------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly 217 (386)
T 3v65_B 153 VVSTG---------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY 217 (386)
T ss_dssp EECSS---------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEeCC---------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEE
Confidence 11100 0124568888755555444 4467888888865443333444446779999995555555
Q ss_pred EEeeCC-CeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccc
Q 015301 201 FSGSDD-SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYD 277 (409)
Q Consensus 201 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 277 (409)
++-... +.|..+++. +.....+ .........++++|++..|..+ ...+.|..+|+.....
T Consensus 218 ~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------ 280 (386)
T 3v65_B 218 WTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------------ 280 (386)
T ss_dssp EEECSSSCEEEEEETT-----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC------------
T ss_pred EeccCCCCEEEEEeCC-----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee------------
Confidence 555445 778888753 2222222 2223456889999876655554 4467788888754110
Q ss_pred cccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcc
Q 015301 278 WDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAP 357 (409)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 357 (409)
...+... . .....+++. .+.++++-...+.|..++..+++.+..+......
T Consensus 281 ----------------------~~~~~~~--~----~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~ 331 (386)
T 3v65_B 281 ----------------------KAVISQG--L----PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHF 331 (386)
T ss_dssp ----------------------EEEECSS--C----SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSC
T ss_pred ----------------------EEEEECC--C----CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCC
Confidence 0000000 0 011222332 3455666667788998887777766666543334
Q ss_pred eeeeEE
Q 015301 358 VRDCCW 363 (409)
Q Consensus 358 v~~~~~ 363 (409)
...+++
T Consensus 332 p~gi~v 337 (386)
T 3v65_B 332 PMDIHT 337 (386)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 445544
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.77 E-value=2.2e-05 Score=67.04 Aligned_cols=206 Identities=7% Similarity=-0.037 Sum_probs=122.5
Q ss_pred eeecCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEE-EEecCCEEEEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLV-YASICAIVNIV 112 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w 112 (409)
.+......+..++|++.+..|. +-...+.|..++.+.... ...... + ......+++.+.+..|. +-...+.|.+.
T Consensus 110 ~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~-~-~~~p~glavd~~~g~lY~~d~~~~~I~~~ 186 (386)
T 3v65_B 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVST-G-LESPGGLAVDWVHDKLYWTDSGTSRIEVA 186 (386)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEECS-S-CSCCCCEEEETTTTEEEEEETTTTEEEEC
T ss_pred EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEEeC-C-CCCccEEEEEeCCCeEEEEcCCCCeEEEE
Confidence 3333445688999997665554 444568899999876632 222111 1 11356688887555554 44556788888
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-c-CeEEEEECCCCeeeeEEcCCCCCeEEE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D-NFIYVYDLQANKCSLRIPAHKSDVNTV 190 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~v~d~~~~~~~~~~~~~~~~v~~~ 190 (409)
+++......... . .......+++.|.+..|+.+.. . +.|..+++............-.....+
T Consensus 187 ~~dg~~~~~l~~--~-------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 251 (386)
T 3v65_B 187 NLDGAHRKVLLW--Q-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 251 (386)
T ss_dssp BTTSCSCEEEEC--S-------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eCCCCceEEeec--C-------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeE
Confidence 876543211111 0 0114688999987666665544 3 678888886543333333334567899
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
+++|.++.++++-+..+.|..+|+. .......+.........+++ ..+.++++-...+.|..+|..++
T Consensus 252 avd~~~~~lY~aD~~~~~I~~~d~d----G~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 252 TIDYAGRRMYWVDAKHHVIERANLD----GSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEGGGTEEEEEETTTTEEEEECTT----SCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCC----CCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 9995566666666677889999964 12222222222344567777 34555666666788888885443
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.75 E-value=3.6e-05 Score=64.69 Aligned_cols=202 Identities=7% Similarity=-0.046 Sum_probs=119.9
Q ss_pred CCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~~ 116 (409)
....+..++|++.+..|..+ ...+.|..++++..... ..... + ...+..+++.+.+..| ++-...+.|.+.+++.
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~-~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVST-G-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEEeC-C-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 34557899999766655544 45688999998765322 22111 1 1235678888755544 4445678899999875
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-c-CeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-D-NFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
........ . .......+++.|.+..|+.+.. . +.|..+++........+...-.....++++|
T Consensus 148 ~~~~~l~~--~-------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~ 212 (349)
T 3v64_C 148 AHRKVLLW--Q-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY 212 (349)
T ss_dssp CSCEEEEC--T-------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEET
T ss_pred CceEEEEe--C-------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeC
Confidence 43221110 0 0113688999986666655543 3 7888888764332222222345678999995
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.++.+.++-...+.|..+|+. .......+.........+++. .+..+++-...+.|..++..++
T Consensus 213 ~~~~lY~aD~~~~~I~~~~~d----G~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 213 AGRRMYWVDAKHHVIERANLD----GSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCEEEEEECCCCEEEEEeCC----CCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCC
Confidence 556666666667889999864 111112222223445677773 4555566566778888875443
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.74 E-value=3.8e-06 Score=78.49 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=102.4
Q ss_pred ceeeEEe-cCceeEeec-----cceEEEEeeecCCC-ceeecC-CCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcC
Q 015301 4 GREVNYS-GRGRFSAAD-----SCHVLSRYLPVNGP-WKVDGM-NSRVYTSQFSNDGSFFVAASQE-----SNIKVYNVD 70 (409)
Q Consensus 4 ~~~~~~s-~dg~~~~~~-----~~~~~~~~~~~~~~-~~l~~h-~~~v~~~~~s~~~~~l~t~~~d-----~~i~vw~~~ 70 (409)
....+|| |||++++.. ........+..... ..+..+ ......++|+|||+.|+....| ..|+++++.
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 3457899 999976631 22222222222221 111111 1123468899999988877655 258888887
Q ss_pred CCeeee-eeeecccccceEEEEEeCCCCcEEEEEec---CCEEEEEEcCCCcccc-ccceeceeeeeeeecCCCCcceee
Q 015301 71 KNWKIQ-KDIETKALRWTITDTSLSPDQRFLVYASI---CAIVNIVDVGSSARES-LANVTEIHKGLDFSADGDEDEFGI 145 (409)
Q Consensus 71 ~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v 145 (409)
++.... ...... .......+.|+|||++|+..+. ...|.++|+.++.... ...+.. ......
T Consensus 256 t~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------------~~~~~~ 322 (751)
T 2xe4_A 256 KLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP------------REKGVR 322 (751)
T ss_dssp SCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC------------CCTTCC
T ss_pred CCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec------------CCCCce
Confidence 763221 111111 1224567899999999987663 3468888887652111 000000 011134
Q ss_pred EEEEEcCCCCeEEEEEe-c----CeEEEEECCCC-eeee-EEcCCCC--CeEEEEEeCCCCcEEEEeeCCCeEEEec
Q 015301 146 FSVKFSTDGQELVAAGS-D----NFIYVYDLQAN-KCSL-RIPAHKS--DVNTVCFADETGHLIFSGSDDSLCKVWD 213 (409)
Q Consensus 146 ~~~~~~~~~~~l~~~~~-d----~~i~v~d~~~~-~~~~-~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd 213 (409)
.++.|+. |+.|+..+. + ..|..+++.++ +... .+. +.. .+..+.+. .+.++++...+|..++|-
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-HSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-CCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-CCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 4555544 444544433 3 36778887653 3222 233 333 34455554 456667777788655554
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.74 E-value=7.9e-07 Score=81.87 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=72.1
Q ss_pred EEEeCC-CCcEEEEEecCC-----------EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeE
Q 015301 90 DTSLSP-DQRFLVYASICA-----------IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQEL 157 (409)
Q Consensus 90 ~~~~s~-~~~~l~~~~~dg-----------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 157 (409)
++++.+ +++.++.|+.+. .+.+||..+++........... .....++++..+++.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~------------~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH------------DMFCPGISMDGNGQIV 257 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC------------CCSSCEEEECTTSCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC------------CCccccccCCCCCCEE
Confidence 456667 888888887532 6889999887754433221111 1123456778899999
Q ss_pred EEEEe-cCeEEEEECCCCeeeeEEcCCCCC-eEEEEEeCCCCcEEEEee-CC-----CeEEEeccc
Q 015301 158 VAAGS-DNFIYVYDLQANKCSLRIPAHKSD-VNTVCFADETGHLIFSGS-DD-----SLCKVWDRR 215 (409)
Q Consensus 158 ~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~ 215 (409)
++|+. +..+.+||..+.+....-..+... -.+++.. +++++++.|+ .+ ..+.+||..
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred EeCCCCCCceEEecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 99884 468999999877654322212221 1334454 5888999988 44 468999964
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.69 E-value=3.9e-05 Score=66.47 Aligned_cols=197 Identities=10% Similarity=0.067 Sum_probs=111.1
Q ss_pred CCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCC-----EEEEEE
Q 015301 41 SRVYTSQFSND--GSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICA-----IVNIVD 113 (409)
Q Consensus 41 ~~v~~~~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~~w~ 113 (409)
.....++|+|+ +..|..+...+.|+.++..++.. ..... ....+..++++++++ |.++...+ .+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-~~~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-DIKTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-EEECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-EEeec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 34678999995 44455554448899999877633 33222 222589999999999 55444321 232232
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecCeEEEEECCCCeeeeEE-c-CCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDNFIYVYDLQANKCSLRI-P-AHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~v~~~ 190 (409)
.... ....... . .......++++| ++.+.++-..++.|+.+|..++.....+ . +.......+
T Consensus 214 ~~~~-~~~~~~~---------~-----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 214 RASG-FTERLSL---------C-----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp GGGT-TCCEEEE---------E-----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred CCCC-eeccccc---------c-----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence 2111 1000000 0 011356788999 6655544445788999999877652222 1 112223479
Q ss_pred EEeCCCCc-EEEEeeCCCeEEEecccccccCCce--eeeeec---------------cccceeEEEE---------cCCC
Q 015301 191 CFADETGH-LIFSGSDDSLCKVWDRRCFISKGRA--NGVLMG---------------HLEGITFIDS---------RRDG 243 (409)
Q Consensus 191 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~---------------~~~~v~~~~~---------~~~~ 243 (409)
+++ ++++ ++++-...+.|+.+++.. ..+.. ...+.+ .-.....+++ .+++
T Consensus 279 a~d-pdG~~LYvad~~~~~I~~~~~d~--~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g 355 (433)
T 4hw6_A 279 VWH-PTGDWAYIIYNGKHCIYRVDYNR--ETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY 355 (433)
T ss_dssp EEC-TTSSEEEEEETTTTEEEEEEBCT--TTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred EEe-CCCCEEEEEeCCCCEEEEEeCCC--CCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence 999 7777 455555678899877531 11110 111111 1123566888 6677
Q ss_pred CeEEEEeCCCcEEEeeC
Q 015301 244 RYFISNGKDQTTKLWDI 260 (409)
Q Consensus 244 ~~l~~~~~dg~i~iwd~ 260 (409)
.++++-...+.|+.++.
T Consensus 356 ~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 356 DFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEEETTTTEEEEECT
T ss_pred cEEEEECCCCEEEEECC
Confidence 76666666778888874
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.65 E-value=1.7e-05 Score=68.66 Aligned_cols=235 Identities=11% Similarity=0.101 Sum_probs=132.3
Q ss_pred cceeeEEecC---ceeEeeccceEEEEeee-cCCCceeecCCCCeEEEEECCCCCEEEEEeCC---Cc-EEEEEcCCCee
Q 015301 3 VGREVNYSGR---GRFSAADSCHVLSRYLP-VNGPWKVDGMNSRVYTSQFSNDGSFFVAASQE---SN-IKVYNVDKNWK 74 (409)
Q Consensus 3 ~~~~~~~s~d---g~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---~~-i~vw~~~~~~~ 74 (409)
.+..++++|+ |....+.....+..+-+ ......+.+.......++|+++|+++++-... .. +...+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 4678999984 66555543344444444 22223444445668999999999944444321 11 33333322211
Q ss_pred eeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcCCCcc-ccccceeceeeeeeeecCCCCcceeeEEEEEcC
Q 015301 75 IQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVGSSAR-ESLANVTEIHKGLDFSADGDEDEFGIFSVKFST 152 (409)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 152 (409)
....... -.....++++| ++.++++-..++.|+.++..++.. ........ ......++|+|
T Consensus 220 ~~~~~~~---~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--------------~~~~~~ia~dp 282 (433)
T 4hw6_A 220 ERLSLCN---ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT--------------KGSNFHIVWHP 282 (433)
T ss_dssp CEEEEEE---CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC--------------CSSCEEEEECT
T ss_pred ccccccc---cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC--------------CCCcccEEEeC
Confidence 1111111 12356688999 666555555678899999876543 11111000 01134699999
Q ss_pred CCCeEEEEEe-cCeEEEEECC--CCee--eeEEcCC---------------CCCeEEEEE---------eCCCCcEEEEe
Q 015301 153 DGQELVAAGS-DNFIYVYDLQ--ANKC--SLRIPAH---------------KSDVNTVCF---------ADETGHLIFSG 203 (409)
Q Consensus 153 ~~~~l~~~~~-d~~i~v~d~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~~l~~~ 203 (409)
++++|+.+.. .+.|..++.. ++.. ...+.+. -.....+++ . .+++++++-
T Consensus 283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD 361 (433)
T 4hw6_A 283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCD 361 (433)
T ss_dssp TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEE
Confidence 9996666554 6789998865 2321 1112111 123567888 5 677777777
Q ss_pred eCCCeEEEecccccccCCceeeeeecc------------------ccceeEEEEc-CCCCeEEEEeCCCcEEEeeCC
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMGH------------------LEGITFIDSR-RDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 261 (409)
...+.|+.++. .+. +..+.+. -.....|+++ +++.++++-...+.|+.++++
T Consensus 362 ~~n~~I~~~~~-----~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 362 RDSHTVRVLTP-----EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTEEEEECT-----TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEECC-----CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 77788999884 222 2222111 1236788998 566666665667788887754
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.63 E-value=4.1e-05 Score=60.38 Aligned_cols=164 Identities=10% Similarity=0.094 Sum_probs=99.0
Q ss_pred ccccceEEEEEeCCCCcEEE-EEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEE
Q 015301 82 KALRWTITDTSLSPDQRFLV-YASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAA 160 (409)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 160 (409)
.+....+..++|+|++..|+ +...++.|...|.. ++......... ......+++.+++.++++.
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g--------------~~D~EGIa~~~~g~~~vs~ 87 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF--------------VKDLETIEYIGDNQFVISD 87 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS--------------CSSEEEEEECSTTEEEEEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC--------------CCChHHeEEeCCCEEEEEE
Confidence 34444799999999866555 56678888888887 44332222111 0136678888888766665
Q ss_pred EecCeEEEEECCCCee---eeEEc------CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee---
Q 015301 161 GSDNFIYVYDLQANKC---SLRIP------AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM--- 228 (409)
Q Consensus 161 ~~d~~i~v~d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--- 228 (409)
-.++.+.++++..... +.... ..+.....++|. +.++.|+++.+.....+|.++.. .....+....
T Consensus 88 E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~-~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 88 ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGL-LSSNELHISKDKA 165 (255)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEEST-TCSSCCEEEECHH
T ss_pred CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEccc-ccCCceeeecchh
Confidence 5577899998765432 22221 134456899999 66666666666555566655311 1111111111
Q ss_pred ----ccccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCC
Q 015301 229 ----GHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 229 ----~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 262 (409)
.+...+.+++++|... +++.......|..+|...
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 1234578999999654 455555677888888764
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.63 E-value=0.00015 Score=62.24 Aligned_cols=206 Identities=9% Similarity=-0.064 Sum_probs=121.5
Q ss_pred eeecCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCe---eeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFFVAA-SQESNIKVYNVDKNW---KIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIV 109 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i 109 (409)
.+......+..++|++.+..|..+ ...+.|+.++++... ....... .....+..+++.+.+..| ++-...+.|
T Consensus 106 ~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 106 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeE
Confidence 444456778999999866655544 456788888887521 1112111 112257888998754444 444567889
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.+.+++.......... .......+++.|.+..|+.+.. .+.|...++........+...-...
T Consensus 184 ~~~~~~g~~~~~l~~~---------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P 248 (400)
T 3p5b_L 184 SVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 248 (400)
T ss_dssp EEECTTTCSEEEEEEC---------------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCE
T ss_pred EEEeCCCCceEEEEeC---------------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCce
Confidence 9988876543222110 0113788999997666666543 3678888886544333333344678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-e--ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-M--GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..|++++.++.+.++-...+.|..+|+. +.....+ . .......++++. .+.++++-...+.|..+|..++
T Consensus 249 ~glavd~~~~~lY~aD~~~~~I~~~d~d-----G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 249 NGITLDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT-----SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEEEeCCCEEEEEECCCCEEEEEeCC-----CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 9999995455555555567889999864 2222222 1 122344566663 3445556666778888886554
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=0.00011 Score=63.83 Aligned_cols=160 Identities=11% Similarity=0.096 Sum_probs=92.8
Q ss_pred CeEEEEECCC-CCEE-EEEeCCCcEEEEEcCCCeeeeeeeecc-cccceEEEEEe-------CCCCcEEEEEecCC----
Q 015301 42 RVYTSQFSND-GSFF-VAASQESNIKVYNVDKNWKIQKDIETK-ALRWTITDTSL-------SPDQRFLVYASICA---- 107 (409)
Q Consensus 42 ~v~~~~~s~~-~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~v~~~~~-------s~~~~~l~~~~~dg---- 107 (409)
....|+|+|. +..| ++-...+.|++.|.+.+. +..+.... ..-..+..++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4678999983 4444 444444678888988763 33333221 12235899999 99999777775543
Q ss_pred ---EEEEEEcCC-CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE-EEEecCeEEEEECC-------CCe
Q 015301 108 ---IVNIVDVGS-SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV-AAGSDNFIYVYDLQ-------ANK 175 (409)
Q Consensus 108 ---~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~-------~~~ 175 (409)
.|.+++... +............ .+ .....++++|++..|+ +-..++.|..+|+. ++.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~---~~--------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIA---AY--------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEE---EE--------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred cCceEEEEecCCCCceeecccceeec---cC--------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 255555333 1211000000000 00 0356788999555554 44457889999997 554
Q ss_pred e-----------eeE-E-cCCCCCeEEEEEeCCCCcE-EEEeeCCCeEEEecc
Q 015301 176 C-----------SLR-I-PAHKSDVNTVCFADETGHL-IFSGSDDSLCKVWDR 214 (409)
Q Consensus 176 ~-----------~~~-~-~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~iwd~ 214 (409)
. ... + .........++|+ ++++. +++-+..+.|+.++.
T Consensus 288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEE
T ss_pred eecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEec
Confidence 3 112 1 1223456899999 78885 445456778888765
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.59 E-value=0.00017 Score=59.67 Aligned_cols=184 Identities=8% Similarity=-0.002 Sum_probs=108.3
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCC----ccccccceece
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSS----ARESLANVTEI 128 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~----~~~~~~~~~~~ 128 (409)
+|+.+.. ..|+..++++..... .... ...+..++|++++..|..+ ...+.|..+++.+. ...... ..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~-~~~~---~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--~~- 74 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS-LIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SR- 74 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE-EECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CS-
T ss_pred EEEEECC-CeEEEEECCCcceEe-hhcC---CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE--eC-
Confidence 3444433 458899988764322 2222 2257899999876656555 45689999998752 111000 00
Q ss_pred eeeeeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC-
Q 015301 129 HKGLDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD- 206 (409)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 206 (409)
.......+++.+.+..|+.+ ...+.|.++++........+.........+++.|.++.++++....
T Consensus 75 ------------~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~ 142 (316)
T 1ijq_A 75 ------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP 142 (316)
T ss_dssp ------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred ------------CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC
Confidence 00135678888755555444 4578999999875443333333445778999994455555554333
Q ss_pred CeEEEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 207 SLCKVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
+.|...++. +.....+ ...-.....+++++++..|..+. ..+.|..+|+..
T Consensus 143 ~~I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 143 AKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CeEEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 678888753 2222222 12234578899998776665554 467899998764
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.58 E-value=0.00018 Score=59.48 Aligned_cols=186 Identities=6% Similarity=0.011 Sum_probs=108.0
Q ss_pred EEEEEeCCCcEEEEEcCCCee-eeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCccccccceeceeee
Q 015301 54 FFVAASQESNIKVYNVDKNWK-IQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARESLANVTEIHKG 131 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 131 (409)
+|+.+. ...|+..+++.... ....... ...+.+++|.+.+..|..+ ...+.|..++..............
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~---~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~---- 77 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGG---LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG---- 77 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEE---EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecC---CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----
Confidence 344433 45689999887631 1111111 1257789999865555544 467789999987653211100000
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee-CCCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS-DDSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i 209 (409)
-.....+++.+.+..|+.+ ...+.|.++++........+.........+++.|..+.++++-. ..+.|
T Consensus 78 ----------l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 78 ----------LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp ----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred ----------CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence 0135678888755445444 44678999998754333333344566789999944555555432 35778
Q ss_pred EEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 262 (409)
...++. +.....+ ...-.....+++++++..|..+ ...+.|..+|+..
T Consensus 148 ~r~~~d-----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 148 ERAGMD-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEcC-----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 888753 2222222 2223456889999876666555 4467888888764
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.55 E-value=0.00029 Score=60.38 Aligned_cols=187 Identities=9% Similarity=-0.008 Sum_probs=109.6
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCcccc-ccceeceeee
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARES-LANVTEIHKG 131 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~-~~~~~~~~~~ 131 (409)
+|+.+. ...|+..+++...... .... ...+..++|++.+..|..+. ..+.|+.+++....... ......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~-~~~~---~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---- 155 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS-LIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---- 155 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE-EECS---CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC----
T ss_pred eeEEec-cceeEEEccCCcceeE-eccc---cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe----
Confidence 444444 4678888887653222 2222 23688999998766666554 56788888886532100 000000
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeC-CCeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSD-DSLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i 209 (409)
........+++.+.+..|+.+ ...+.|.+.++........+.........+++.|..+.++++-.. .+.|
T Consensus 156 --------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I 227 (400)
T 3p5b_L 156 --------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 227 (400)
T ss_dssp --------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCE
T ss_pred --------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEE
Confidence 001136788888744445444 446889999987655444444444568999999545555555423 3678
Q ss_pred EEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
...++. +.....+ ...-.....|++++++..|..+. ..+.|..+|+..
T Consensus 228 ~~~~~d-----G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 228 KKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCC-----CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 888753 2222222 22335678899998777666654 466888888764
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.53 E-value=0.00025 Score=58.71 Aligned_cols=202 Identities=10% Similarity=-0.036 Sum_probs=118.8
Q ss_pred CCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCC---eeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEE
Q 015301 39 MNSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKN---WKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVD 113 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~ 113 (409)
....+..++|++++..|. +-..++.|..++++.. ......... . -..+..+++.+.+..| ++-...+.|.+.+
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D-IQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-C-CCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 445688999998765555 4455688999998761 121222211 1 1245778888755545 4445678999999
Q ss_pred cCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--CeEEEEECCCCeeeeEE-cCCCCCeEEE
Q 015301 114 VGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--NFIYVYDLQANKCSLRI-PAHKSDVNTV 190 (409)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~v~~~ 190 (409)
............ .......+++.|.+..|+.+... +.|...++.. .....+ ...-.....+
T Consensus 106 ~~g~~~~~~~~~---------------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gl 169 (316)
T 1ijq_A 106 TKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGI 169 (316)
T ss_dssp TTSSSEEEEEEC---------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEE
T ss_pred CCCCceEEEEEC---------------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEE
Confidence 875432211110 01146789999866666655543 6888888753 333333 2334567899
Q ss_pred EEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee---ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 191 CFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM---GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
+++|.++.++++-+..+.|..+|+. +.....+. ........+++. .+.++++-...+.|..++..++.
T Consensus 170 a~d~~~~~lY~~D~~~~~I~~~d~d-----g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 170 TLDLLSGRLYWVDSKLHSISSIDVN-----GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCeEEEEecC-----CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 9994455555555567889999964 22222221 112345677775 35556666667889888875543
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=0.00026 Score=61.55 Aligned_cols=266 Identities=11% Similarity=0.071 Sum_probs=142.8
Q ss_pred eEEEEEeCC-CCcEEEEEec-CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEE-------cCCCCeE
Q 015301 87 TITDTSLSP-DQRFLVYASI-CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKF-------STDGQEL 157 (409)
Q Consensus 87 ~v~~~~~s~-~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l 157 (409)
....|+|+| +...|.++.. .+.|++.|+.++.......... ........++| +++++.|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~------------~~~~~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT------------IPTNRIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT------------SSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc------------cccCCCcEEEEeecccccCCCCCEE
Confidence 467899998 3555555543 4678889988876543332211 01124888999 9999977
Q ss_pred EEEEecC-------eEEEEECCC-Ceee-----eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccc---cCC
Q 015301 158 VAAGSDN-------FIYVYDLQA-NKCS-----LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFI---SKG 221 (409)
Q Consensus 158 ~~~~~d~-------~i~v~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~ 221 (409)
+++...+ .|.+++... +... ..+.. ......++++|.++.++++-..++.|..+|+.... ..+
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 7776543 366665433 2221 22221 12345778885577777777788999999975100 011
Q ss_pred ce-----------eee-e-eccccceeEEEEcCCCCeEEEE-eCCCcEEEeeCCCCcccccccccccccccccccccccc
Q 015301 222 RA-----------NGV-L-MGHLEGITFIDSRRDGRYFISN-GKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPS 287 (409)
Q Consensus 222 ~~-----------~~~-~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (409)
.. ... . .+.......++|+|+|++|+.+ .....|+.++................ ..
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG----------~~ 356 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVG----------GY 356 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEE----------BT
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecC----------CC
Confidence 11 111 1 1122345789999999954444 45678888665431100000000000 00
Q ss_pred cceeccccCcc-ceeeeecccceeeeeEEEEeeeec-------CCCCEEEEEeCCCeEEEEEccCCceEEEeccC-----
Q 015301 288 YARRLKHPHDQ-SLATYKGHSVLRTLIRCYFSPEYS-------TAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFH----- 354 (409)
Q Consensus 288 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s-------~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----- 354 (409)
..... .++. ....|. .... .+... +++.++++=..+.+|+.++ .++. +.++.+.
T Consensus 357 g~~G~--~DG~~~~a~f~------~P~~---gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~ 423 (496)
T 3kya_A 357 KQSGY--RDDVGTEARMN------NPCQ---GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTS 423 (496)
T ss_dssp TBCCC--BCCBGGGCBCS------SEEE---EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHH
T ss_pred CCCcc--cCCcccccccC------CCeE---EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccccccc
Confidence 00000 0000 000000 0000 11122 3466677667788899998 4553 4444321
Q ss_pred -------------------CcceeeeEEecC-cCeEEeecCCCeEEEEecCCCc
Q 015301 355 -------------------NAPVRDCCWHPI-YPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 355 -------------------~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
-.....|+++++ +.++++=..+.+|+.++++...
T Consensus 424 ~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 424 LADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp HHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred ccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 013567899997 7766666778899999987643
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.44 E-value=0.00037 Score=56.71 Aligned_cols=178 Identities=13% Similarity=0.158 Sum_probs=111.5
Q ss_pred ceeecCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeec----ccccceEEEEEe---CCCCcEEEEEec
Q 015301 34 WKVDGMNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIET----KALRWTITDTSL---SPDQRFLVYASI 105 (409)
Q Consensus 34 ~~l~~h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~----~~~~~~v~~~~~---s~~~~~l~~~~~ 105 (409)
..+....-.--+++|.+....|..++ ..++|..|+...+......... ......+..+.| .|+++++++...
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 34445555566889988666666665 7899999998755322221211 111224689999 688777775432
Q ss_pred -------------CCEEEEEEcC---CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-CeEEE
Q 015301 106 -------------CAIVNIVDVG---SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-NFIYV 168 (409)
Q Consensus 106 -------------dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~v 168 (409)
+..|..+|+. +++......+...... +.............++..++|+..++++.. +.|..
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~--~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE--FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH--HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc--ccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence 6789999998 6655433322211100 000000011248899999999999988888 88888
Q ss_pred EECCCCeeeeEE--c----CCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 169 YDLQANKCSLRI--P----AHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 169 ~d~~~~~~~~~~--~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+.... .+..+ . ......+.|++. |++++|++....|.+..+|++
T Consensus 164 V~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 164 VSADGK-TVSTFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ECTTSC-CEEEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECS
T ss_pred EeCCCC-EEeeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCC
Confidence 886543 23222 1 112236799999 788888777679999999976
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.42 E-value=0.0012 Score=61.44 Aligned_cols=187 Identities=9% Similarity=-0.012 Sum_probs=107.0
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCCcccc-ccceeceeee
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSSARES-LANVTEIHKG 131 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~~~~~-~~~~~~~~~~ 131 (409)
+|+.+. ...|+..++...... .+... ...+..++|.+....|+.+ ...+.|+.+++....... ......
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~-~l~~~---~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~---- 467 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT-SLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---- 467 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE-EEECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----
T ss_pred cccccc-ccceeEeeccCCcce-eeecC---CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe----
Confidence 444443 355888887765322 22222 2257889999865555544 456788888886532100 000000
Q ss_pred eeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC-CeE
Q 015301 132 LDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD-SLC 209 (409)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i 209 (409)
........+++.+.+..|+.+. ..+.|.+.++........+.........|++.|..+.++++-... +.|
T Consensus 468 --------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 468 --------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 539 (791)
T ss_dssp --------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred --------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence 0011366788888775565554 468999999875544333344455689999995455555554333 678
Q ss_pred EEecccccccCCceeeee-eccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 210 KVWDRRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
...++. +.....+ .........|++++.+..|+.+. ..+.|...++..
T Consensus 540 ~~~~~d-----G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 540 KKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEecC-----CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 888753 3322222 22335678899997766665554 456788888764
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.34 E-value=0.0011 Score=61.82 Aligned_cols=209 Identities=10% Similarity=-0.037 Sum_probs=120.7
Q ss_pred eeecCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCe---eeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEE
Q 015301 35 KVDGMNSRVYTSQFSNDGSFF-VAASQESNIKVYNVDKNW---KIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIV 109 (409)
Q Consensus 35 ~l~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i 109 (409)
.+......+..++|++.+..| ++-...+.|+.++++... ....... .....+..|++.+.++.|..+ ...+.|
T Consensus 418 ~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 418 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 444455678899999855555 454556788888887531 1111111 112246778888877555544 567889
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCe
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDV 187 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v 187 (409)
.+.++.......+... .......|++.|.+.+|+.+.. .+.|...++........+...-...
T Consensus 496 ~v~~ldG~~~~~l~~~---------------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp EEEETTSSSEEEEEEC---------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred EEEeCCCCeEEEEEeC---------------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 9999875543222110 0113788999997666666653 2679999986544433344344678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeec--cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcc
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMG--HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSS 265 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 265 (409)
..|++.+..+.++++-...+.|...++. .......+.. ......+|++.. +.++++-...+.|...|..++..
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~d----G~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVN----GGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCC
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecC----CCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcc
Confidence 9999995555555555566788888864 2222122221 122344666643 34444445567788777655443
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.33 E-value=0.00083 Score=55.49 Aligned_cols=229 Identities=10% Similarity=-0.013 Sum_probs=131.9
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeee
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCS 177 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~ 177 (409)
+|+.+. ...|+..++.............. ..+..++|.+.+..|+.+. ..+.|..+++..+...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~--------------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~ 70 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGL--------------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV 70 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEE--------------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCC--------------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce
Confidence 444443 46788899876542111111111 1367899998655555544 4678999998765322
Q ss_pred -eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeee-eeccccceeEEEEcCCCCeEEEEeC--CC
Q 015301 178 -LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGV-LMGHLEGITFIDSRRDGRYFISNGK--DQ 253 (409)
Q Consensus 178 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~--dg 253 (409)
..+...-.....+++.+..++++++-...+.|.++++. +..... ..........+++.|.+..|+.... .+
T Consensus 71 ~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-----G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~ 145 (318)
T 3sov_A 71 QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP 145 (318)
T ss_dssp CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSC
T ss_pred EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-----CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCC
Confidence 22222234567888885566777776777899999864 222222 2233455788999987665555542 46
Q ss_pred cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEE-e
Q 015301 254 TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTG-S 332 (409)
Q Consensus 254 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~ 332 (409)
.|...++.... ...+-... ......+++++++..|+.+ +
T Consensus 146 ~I~r~~~dG~~-----------------------------------~~~~~~~~-----l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 146 KIERAGMDGSS-----------------------------------RFIIINSE-----IYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EEEEEETTSCS-----------------------------------CEEEECSS-----CSCEEEEEEETTTTEEEEEET
T ss_pred EEEEEEcCCCC-----------------------------------eEEEEECC-----CCCccEEEEeccCCEEEEEEC
Confidence 77777765311 11110000 1122355788766655555 4
Q ss_pred CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 333 SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 333 ~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
..+.|..+|+..................+++.. +.++.+-...+.|..++..+++
T Consensus 186 ~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 186 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 568899999864433322332334556777753 3455555567889999886554
No 291
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.33 E-value=0.0009 Score=55.66 Aligned_cols=223 Identities=9% Similarity=0.025 Sum_probs=112.7
Q ss_pred ceeeEEecCceeEeeccceEEEEeeecCCCceee-----cCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeee
Q 015301 4 GREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVD-----GMNSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKD 78 (409)
Q Consensus 4 ~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~-----~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~ 78 (409)
.++|.+.+++...+.+....+.+.......+... .....+.++.|++ +..++ ++.++.|.. ..+.++.....
T Consensus 38 ~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~ 114 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQI 114 (327)
T ss_dssp EEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEEC
T ss_pred EEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceEC
Confidence 4667777666544444333333322222222221 1245789999986 44444 455664433 34444333332
Q ss_pred eecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEE
Q 015301 79 IETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELV 158 (409)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 158 (409)
.....+...+..+.+.+++..++++. +|.|.. ..+.++.-.... . .....+..+.+.+++.+++
T Consensus 115 ~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~--~------------~~~~~~~~~~~~~~~~~~~ 178 (327)
T 2xbg_A 115 PLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALV--Q------------EAIGVMRNLNRSPSGEYVA 178 (327)
T ss_dssp CCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEE--C------------SCCCCEEEEEECTTSCEEE
T ss_pred ccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEee--c------------CCCcceEEEEEcCCCcEEE
Confidence 22112223467788777776666554 554321 122222111110 0 1122578899999888776
Q ss_pred EEEecCeEEE-EEC--CCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeee----ccc
Q 015301 159 AAGSDNFIYV-YDL--QANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM----GHL 231 (409)
Q Consensus 159 ~~~~d~~i~v-~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~ 231 (409)
++. +|.+.. .|- .+-+.+ -......+..+.+. +++.++ .++.+|.+++.+.. .+..-..+. ...
T Consensus 179 ~g~-~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~-~~g~~~-~~~~~G~~~~s~~D----~G~tW~~~~~~~~~~~ 249 (327)
T 2xbg_A 179 VSS-RGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFT-PDGRLW-MIVNGGKIAFSDPD----NSENWGELLSPLRRNS 249 (327)
T ss_dssp EET-TSSEEEEECTTCSSCEEE--ECCSSSCEEEEEEC-TTSCEE-EEETTTEEEEEETT----EEEEECCCBCTTSSCC
T ss_pred EEC-CCcEEEEeCCCCCceeEC--CCCCCCccceeEEC-CCCCEE-EEeCCceEEEecCC----CCCeeEeccCCcccCC
Confidence 654 454444 342 222322 12345678899988 566655 45567887776311 122111111 122
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcE
Q 015301 232 EGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 232 ~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
..+..+.+.+++..++++ .+|.+
T Consensus 250 ~~~~~v~~~~~~~~~~~g-~~g~i 272 (327)
T 2xbg_A 250 VGFLDLAYRTPNEVWLAG-GAGAL 272 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-STTCE
T ss_pred cceEEEEecCCCEEEEEe-CCCeE
Confidence 357888898877766654 46655
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.32 E-value=0.00047 Score=56.61 Aligned_cols=193 Identities=12% Similarity=0.202 Sum_probs=115.2
Q ss_pred CCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC---CCc---EEEEeeC---CCeEEEecccccccCCce
Q 015301 153 DGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE---TGH---LIFSGSD---DSLCKVWDRRCFISKGRA 223 (409)
Q Consensus 153 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~~---dg~i~iwd~~~~~~~~~~ 223 (409)
...+++.....+-+.+||+ +++.++.+.. +.++.+..-|. .+. ++++... +++|.+|++.. ....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp---~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG---KNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT---TTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC---CCCc
Confidence 3445665666789999999 8888888864 56777776620 111 3333333 57899997631 1112
Q ss_pred eeeeec------cc-cceeEEEE--cCC-CC-eEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceec
Q 015301 224 NGVLMG------HL-EGITFIDS--RRD-GR-YFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRL 292 (409)
Q Consensus 224 ~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (409)
+..+.. .. ..+..+++ +|. ++ ++++...+|.+..|++........
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------------------ 168 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------------------ 168 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------------------
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------------------
Confidence 322211 11 45666777 664 43 677888899999999854211100
Q ss_pred cccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEcc-----CCceEEEec-cC-CcceeeeEE--
Q 015301 293 KHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLV-----SGAQVAKLD-FH-NAPVRDCCW-- 363 (409)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~-----~~~~~~~~~-~~-~~~v~~~~~-- 363 (409)
..+.+..+.... ... .+..++....|+.+-++.-|..|+.+ +++.+..+. ++ ...+..|+.
T Consensus 169 ---~~~lVR~f~lgs---q~E----gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~ 238 (355)
T 3amr_A 169 ---SGKKVRAFKMNS---QTE----GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY 238 (355)
T ss_dssp ---EEEEEEEEECSS---CEE----EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE
T ss_pred ---cceEEEEecCCC---Ccc----eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe
Confidence 023334444332 122 22456667899999998777777754 345555542 22 236788887
Q ss_pred ecCcC-eEEeec-CCCeEEEEecC
Q 015301 364 HPIYP-MLISSS-WDCNIVRWEIP 385 (409)
Q Consensus 364 s~~~~-~l~s~~-~dg~i~iw~~~ 385 (409)
.++++ +|++++ .++.+.+||..
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCEEEEEEcCCCCEEEEEECC
Confidence 45555 555554 67799999986
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.27 E-value=2.2e-05 Score=72.47 Aligned_cols=241 Identities=10% Similarity=0.045 Sum_probs=128.4
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCC----ccccccceeceeeeeeee
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS-ICAIVNIVDVGSS----ARESLANVTEIHKGLDFS 135 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~----~~~~~~~~~~~~~~~~~~ 135 (409)
.+.|+..++++...... .... ..+..++|++.+..|+.+. ..+.|+.+++.+. ....... .
T Consensus 385 ~~~I~~id~~~~~~~~~-~~~~---~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~-------- 450 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL-IPNL---RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R-------- 450 (699)
T ss_dssp TTC-CEECTTSCCEECC-SCCC---TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--S--------
T ss_pred ccceEEEeCCCCcceee-eccC---cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--C--------
Confidence 35688888776533221 1111 2467789998777776664 4578888888751 1111100 0
Q ss_pred cCCCCcceeeEEEEEcCCCCeEEEE-EecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCC-CeEEEec
Q 015301 136 ADGDEDEFGIFSVKFSTDGQELVAA-GSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDD-SLCKVWD 213 (409)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd 213 (409)
.......+++.+.+..|+.+ ...+.|.++++........+.........+++.|..+.++++-... +.|..++
T Consensus 451 -----~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 451 -----DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp -----CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred -----CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 00124567787544444443 4467899999875543333333334567889984455555444333 6788877
Q ss_pred ccccccCCceeeee-eccccceeEEEEcCCCCeEEE-EeCCCcEEEeeCCCCccccccccccccccccccccccccccee
Q 015301 214 RRCFISKGRANGVL-MGHLEGITFIDSRRDGRYFIS-NGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARR 291 (409)
Q Consensus 214 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (409)
+. +.....+ .........|+++|++..|+. -...+.|..+++.......
T Consensus 526 ~d-----G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~------------------------ 576 (699)
T 1n7d_A 526 LN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------------------------ 576 (699)
T ss_dssp SS-----SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE------------------------
T ss_pred CC-----CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE------------------------
Confidence 53 2222222 122334678999987655544 4456789998876411100
Q ss_pred ccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeeeEEe
Q 015301 292 LKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWH 364 (409)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s 364 (409)
+ +...... ...+.+++.. +.++++....+.|..++..+++.+..+.......+.|++.
T Consensus 577 --------~--~~~~~~~----~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 577 --------I--LEDEKRL----AHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp --------E--CCCSSSC----SSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred --------E--EecCCcC----CCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 0 0000000 0011222322 2445555567899999988888877775433344555443
No 294
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.22 E-value=0.0017 Score=54.54 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=118.4
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCceee------cCCCCeEEEEECCC---CCEEEEEeC----C----CcEE
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWKVD------GMNSRVYTSQFSND---GSFFVAASQ----E----SNIK 65 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~l~------~h~~~v~~~~~s~~---~~~l~t~~~----d----~~i~ 65 (409)
.++.+++.|||+++.+.....+..+-+... ..+. .-......|+|+|+ +..|.++.. + ..|.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 468899999999777755444444432222 2221 12356889999997 444544332 2 5677
Q ss_pred EEEcCCC------ee-eeeeee-cccccceEEEEEeCCCCcEEEEEec-------------CCEEEEEEcCCCccccccc
Q 015301 66 VYNVDKN------WK-IQKDIE-TKALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSARESLAN 124 (409)
Q Consensus 66 vw~~~~~------~~-~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~~w~~~~~~~~~~~~ 124 (409)
.|+.... .. +..... ...| ....++|.|||.+.++.+. .|.|.-++.+..-.. ..
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~--~n 184 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA--DN 184 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT--TS
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC--CC
Confidence 7776653 11 111111 1122 3467999999986666432 144554544321000 00
Q ss_pred eeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecC----eEEEEECCC--------C--------eeeeEEcCC
Q 015301 125 VTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDN----FIYVYDLQA--------N--------KCSLRIPAH 183 (409)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~----~i~v~d~~~--------~--------~~~~~~~~~ 183 (409)
... ...+ +.. ++ .....++|+| ++. |.++.... .|.+..... + .++..+...
T Consensus 185 pf~-~~~i-~a~---G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 185 PFP-NSPI-WSY---GH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp SST-TCCE-EEE---CC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCC-CCcE-EEE---cc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 000 0000 000 01 1256799999 565 44443321 244332111 0 122233112
Q ss_pred CCCeEEEEEeC------CCCcEEEEeeCCCeEEEecccccccCCcee--eee-eccccceeEEEEcCCCCeEEEEe
Q 015301 184 KSDVNTVCFAD------ETGHLIFSGSDDSLCKVWDRRCFISKGRAN--GVL-MGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 184 ~~~v~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
......++|.. .++.++++.-..+.|...++.. .+... ..+ .+....+..+++.|||.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD---NMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG---GGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC---CCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 34577888831 4567777766677888887641 11111 122 22245688999999998666654
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.20 E-value=0.0034 Score=57.07 Aligned_cols=204 Identities=10% Similarity=-0.011 Sum_probs=116.1
Q ss_pred CCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCC
Q 015301 39 MNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGS 116 (409)
Q Consensus 39 h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~ 116 (409)
.-.....++|++.+..|..+. ..+.|..++++........... + -..+..+++.+.+..|..+ ...+.|.+.+++.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-G-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-C-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 345678999998776666554 4678888888765221222221 1 1258889999866555544 5678999999876
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeC
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFAD 194 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 194 (409)
........ .. -.....+++.|.+..|+.+.. .+.|...++............-.....+++.+
T Consensus 116 ~~~~~l~~-~~--------------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~ 180 (619)
T 3s94_A 116 SLRKVLFW-QE--------------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY 180 (619)
T ss_dssp CSCEEEEC-SS--------------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred CCEEEEEe-CC--------------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEc
Confidence 54322211 00 113677999997666666553 36777777754333333333445678999995
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
.++.++++-...+.|...|+. .........+......++++..+ ..+++-...+.|...|..+..
T Consensus 181 ~~~~LY~aD~~~~~I~~~~~d----G~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 181 EEQKLYWADAKLNFIHKSNLD----GTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp TTTEEEEEETTTCCEEEESSS----CCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred cCCEEEEEeCCCCeEEEecCC----CCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 456666665667789988864 11111111112222345666654 444444456778888776543
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.17 E-value=0.00059 Score=55.52 Aligned_cols=168 Identities=6% Similarity=-0.000 Sum_probs=102.6
Q ss_pred EcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceee-eeec----c--ccceeEEEE---cCCCCeEEEE
Q 015301 180 IPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANG-VLMG----H--LEGITFIDS---RRDGRYFISN 249 (409)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~l~~~ 249 (409)
+........+++|.+.++.++++.-..+.|..||.. .+.... .+.. . ...+..+.+ .|+++++++.
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~----~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~ 83 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK----TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVM 83 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTT----TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCC----CCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEE
Confidence 444455667899984455555555589999999963 222221 2221 0 113578999 6887777754
Q ss_pred e-------------CCCcEEEeeCC---CCcccccccccccccccccccccccccceeccccCccceeeee--cccce--
Q 015301 250 G-------------KDQTTKLWDIR---KMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYK--GHSVL-- 309 (409)
Q Consensus 250 ~-------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-- 309 (409)
. .+..|..||+. +.+. +.... .....
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~----------------------------------~~~~dL~~~~~~~~ 129 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKP----------------------------------VWSVNFEKVQDEFE 129 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCC----------------------------------SEEEESHHHHHHHH
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCE----------------------------------EEEecCcccccccc
Confidence 3 15678888987 4221 11111 00000
Q ss_pred ---eeeeEEEEeeeecCCCCEEEEEeCC-CeEEEEEccCCceEEEec--c----CCcceeeeEEecCcCeEEeecCCCeE
Q 015301 310 ---RTLIRCYFSPEYSTAQKYIYTGSSD-NSVYIYDLVSGAQVAKLD--F----HNAPVRDCCWHPIYPMLISSSWDCNI 379 (409)
Q Consensus 310 ---~~~~~~~~~~~~s~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~--~----~~~~v~~~~~s~~~~~l~s~~~dg~i 379 (409)
......+..++..++|+..++++.. +.|...+... +.+..+. . .....+.|+++|++..|++...+|.|
T Consensus 130 ~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 130 KKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp HHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred ccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeE
Confidence 0011335567788999999999888 8877777643 3333221 1 12236799999999977777669999
Q ss_pred EEEecCC
Q 015301 380 VRWEIPG 386 (409)
Q Consensus 380 ~iw~~~~ 386 (409)
..+|+..
T Consensus 209 ~~fD~~~ 215 (334)
T 2p9w_A 209 TAFDVSK 215 (334)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 9999874
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.17 E-value=0.0021 Score=53.95 Aligned_cols=234 Identities=8% Similarity=0.011 Sum_probs=116.3
Q ss_pred cceeeEEecCceeEeeccceEEEEeeecCCCce------eecCCCCeEEEEECCC---CCEEEEEeC-C-----CcEEEE
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLPVNGPWK------VDGMNSRVYTSQFSND---GSFFVAASQ-E-----SNIKVY 67 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~------l~~h~~~v~~~~~s~~---~~~l~t~~~-d-----~~i~vw 67 (409)
.++.+++.|||+++.+.....+..+. ...... ...-......++|+|+ +..|.++.. + +.|..|
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 46889999999977765544444433 111111 1122456899999998 555544432 2 568888
Q ss_pred EcCCCe-----eeeeeee---cccccceEEEEEeCCCCcEEEEEec-------------CCEEEEEEcCCCcccccccee
Q 015301 68 NVDKNW-----KIQKDIE---TKALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSARESLANVT 126 (409)
Q Consensus 68 ~~~~~~-----~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~~w~~~~~~~~~~~~~~ 126 (409)
+...+. .+..... ...| ....++|.|||.+.++.+. .|.|.-++.+.. ........
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf~ 187 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPFL 187 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTTT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCccc
Confidence 876431 1111111 1122 3468999999976665432 145555555431 00000000
Q ss_pred c-e-eeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEec-Ce--------EEEEECCCCe------------------e
Q 015301 127 E-I-HKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSD-NF--------IYVYDLQANK------------------C 176 (409)
Q Consensus 127 ~-~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-~~--------i~v~d~~~~~------------------~ 176 (409)
. . .....+.. ++ .....++|+| ++. |.++... .. |.+. ..+. +
T Consensus 188 ~~~~~~~~i~a~---G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 188 GRRGARPEVYSL---GH-RNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TCTTSCTTEEEE---CC-SEECCCEECTTTCC-EEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCC
T ss_pred CCCCCCccEEEE---cC-CCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCC
Confidence 0 0 00000000 01 1366789999 555 4444332 22 3332 2221 2
Q ss_pred eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC--CceeeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 177 SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK--GRANGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
+..+. +......++|. +++++++....+.|...++...... ......+......+..+++.|||.++++..
T Consensus 261 ~~~~~-~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 261 LYFWP-QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp SEECT-TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred eEecC-CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 22232 23356778885 5677776666777877776421100 000122222235688999999998666653
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.17 E-value=0.0011 Score=54.38 Aligned_cols=194 Identities=13% Similarity=0.199 Sum_probs=112.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCC----CcE--EEEEe--c--CCEEEEEEcC--CCc
Q 015301 51 DGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPD----QRF--LVYAS--I--CAIVNIVDVG--SSA 118 (409)
Q Consensus 51 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~~--~--dg~i~~w~~~--~~~ 118 (409)
...+++.....+-+.+||+ .++.+.... . +.++.+..-|+ ++. |+.++ . +++|.+|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~-~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN-T----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC-C----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc-C----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4456666667788999999 554555432 1 24555555442 222 33333 3 5789999774 332
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEE--cCC-CC-eEEEEEecCeEEEEECC-------CCeeeeEEcCCCCCe
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKF--STD-GQ-ELVAAGSDNFIYVYDLQ-------ANKCSLRIPAHKSDV 187 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~-------~~~~~~~~~~~~~~v 187 (409)
.......... +.. ....+..+++ +|. ++ ++++...+|.+..|++. +.+.++++.. .+.+
T Consensus 113 l~~i~~~~~p-----v~t----~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~ 182 (355)
T 3amr_A 113 LQSMTDPDHP-----IAT----AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQT 182 (355)
T ss_dssp EEECSCTTSC-----EEC----CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCE
T ss_pred eeeccccccC-----cCC----CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCc
Confidence 2111110000 000 0024666777 664 43 67778888999999882 3355666654 4678
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEeccccccc-CCceeeeee-cc-ccceeEEEE--cCCCC-eEEEEe-CCCcEEEeeC
Q 015301 188 NTVCFADETGHLIFSGSDDSLCKVWDRRCFIS-KGRANGVLM-GH-LEGITFIDS--RRDGR-YFISNG-KDQTTKLWDI 260 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~ 260 (409)
..+... +....|+.+-++.-|..++.+.... ....+.... ++ ...+..|++ .++++ +|++++ .+....+||.
T Consensus 183 EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 183 EGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 889998 6777888888886666666431110 122333221 22 236788877 45555 666666 5779999998
Q ss_pred C
Q 015301 261 R 261 (409)
Q Consensus 261 ~ 261 (409)
.
T Consensus 262 ~ 262 (355)
T 3amr_A 262 Q 262 (355)
T ss_dssp S
T ss_pred C
Confidence 6
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.15 E-value=0.00081 Score=55.22 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCcEEEEEe-cC-----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----C
Q 015301 96 DQRFLVYAS-IC-----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----N 164 (409)
Q Consensus 96 ~~~~l~~~~-~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~ 164 (409)
++..++.|+ .+ ..+.+||..+.+........... .....+. .++..++.|+.+ .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------------~~~~~~~--~~~~l~v~GG~~~~~~~~ 78 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR-------------RYVASVS--LHDRIYVIGGYDGRSRLS 78 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC-------------BSCEEEE--ETTEEEEECCBCSSCBCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh-------------ccccEEE--ECCEEEEEcCCCCCccCc
Confidence 455666666 33 36888888877644333221110 0111222 256777777754 4
Q ss_pred eEEEEECCCCe---eeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccce
Q 015301 165 FIYVYDLQANK---CSLR--IPAHKSDVNTVCFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGI 234 (409)
Q Consensus 165 ~i~v~d~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v 234 (409)
.+.+||..+.+ .... ++..... .+++.. ++.+++.|+.+ ..+.+||+.. .....+..+.......
T Consensus 79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~ 153 (301)
T 2vpj_A 79 SVECLDYTADEDGVWYSVAPMNVRRGL-AGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI--DQWSMLGDMQTAREGA 153 (301)
T ss_dssp CEEEEETTCCTTCCCEEECCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECSSCCBSC
T ss_pred eEEEEECCCCCCCeeEECCCCCCCccc-eeEEEE--CCEEEEEcccCCCcccceEEEEcCCC--CeEEECCCCCCCcccc
Confidence 68999998766 3322 2211111 222332 56777777654 3577888641 1112222221111111
Q ss_pred eEEEEcCCCCeEEEEeCC-----CcEEEeeCCC
Q 015301 235 TFIDSRRDGRYFISNGKD-----QTTKLWDIRK 262 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 262 (409)
..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 154 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 154 GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 22222 56677777654 3477777665
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.15 E-value=0.0019 Score=52.19 Aligned_cols=268 Identities=7% Similarity=0.105 Sum_probs=163.5
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
+..|.|-|+..+....+.. -..+ +.-.+|..+.||.-. ...++++|+++........+.+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp--i~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e------------- 107 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP--ISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 107 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE--CCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCEEEEEECCCCCCccccc--cccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-------------
Confidence 3478888988764442211 1111 233588888888776 7899999999887655544433
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC----CCCeEEEEEeCCCCcEEEEeeC-------CCe
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH----KSDVNTVCFADETGHLIFSGSD-------DSL 208 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~-------dg~ 208 (409)
+|.-=.|-.+.. |+..+ +..|+.|++.. ..+.+.+..| ...|..-..+ ++.++++..+- .|.
T Consensus 108 ---~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 108 ---DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp ---CEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEEC-TTSCEEEEEEEEEETTEEEEE
T ss_pred ---ccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEEC-CCCCEEEEEeEeccCCcccee
Confidence 365566665543 44433 56899999974 3455555443 3456666667 67777665442 367
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCC---CCeEEEEeC---CCcEEEeeCCCCc-ccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRD---GRYFISNGK---DQTTKLWDIRKMS-SNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 281 (409)
+.+|.. .....+.+.+|......+.+..+ ...++.+.. .+.+++.++.... .......
T Consensus 182 mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k---------- 246 (365)
T 2xzh_A 182 MQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---------- 246 (365)
T ss_dssp EEEEET-----TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCC----------
T ss_pred EEEEee-----cccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccc----------
Confidence 889985 45666778888765544443221 123333332 2588888885531 1111100
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeee
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
+.+..+-... .......++..|+.-..+..-+.-|.|++||++++.++..-+-...+|..-
T Consensus 247 ----------------k~vdi~fppe---a~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~t 307 (365)
T 2xzh_A 247 ----------------KAVDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 307 (365)
T ss_dssp ----------------EEEEECCCTT---CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ----------------ccceeeCCcc---ccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEe
Confidence 0011110000 001122344566777889999999999999999999998888777777766
Q ss_pred EEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+-+....=++.....|.|.--.+++..
T Consensus 308 a~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 308 APHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred cccCCCCcEEEEcCCCEEEEEEECccc
Confidence 665555556666688988877776644
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.15 E-value=0.0025 Score=53.53 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=61.2
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEec
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGSD 163 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d 163 (409)
....++|.|+|++++ +..+|.|++++ +++........ ...........++++|+ +..|+++...
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~----------v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELS----------VYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECC----------CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecce----------EeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 477899999998555 55679999998 33321111110 00011235789999998 5566655442
Q ss_pred ------CeEEEEECCCCe-----ee-eEEc---CCCCCeEEEEEeCCCCcEEEEee
Q 015301 164 ------NFIYVYDLQANK-----CS-LRIP---AHKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 164 ------~~i~v~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
+.|..++...+. .+ ..+. ........++|. +++.++++.+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G 153 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG 153 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence 678888876432 11 1233 111234689999 7887776643
No 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.09 E-value=0.0025 Score=52.25 Aligned_cols=186 Identities=14% Similarity=0.151 Sum_probs=91.8
Q ss_pred CCEEEEEeCC----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCccccc
Q 015301 52 GSFFVAASQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSARESL 122 (409)
Q Consensus 52 ~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~ 122 (409)
+.+++.|+.+ ..+.+||..+.. .............-..+.+ ++..++.|+.+ ..+.+||..+.+....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 4455566543 358888888763 2222111111111112222 56777777754 3588888887764433
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCCCeeeeEE--cCCCCCeEEEEEeCC
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKCSLRI--PAHKSDVNTVCFADE 195 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~ 195 (409)
....... .....+.+ +++.++.|+.+ ..+.+||+.+.+....- +..... .+++..
T Consensus 93 ~~~p~~r-------------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-- 154 (302)
T 2xn4_A 93 ANMRDRR-------------STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVV-- 154 (302)
T ss_dssp CCCSSCC-------------BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEE--
T ss_pred CCCCccc-------------cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEE--
Confidence 3221110 01112222 66777777764 36888998877654321 211111 223333
Q ss_pred CCcEEEEeeCC-------CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCCC
Q 015301 196 TGHLIFSGSDD-------SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRK 262 (409)
Q Consensus 196 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 262 (409)
++.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATT--NEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCC--CcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 56677777643 3478888641 111222112111111122222 567777776543 577787765
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.08 E-value=0.0029 Score=51.91 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=93.3
Q ss_pred CCCEEEEEe-CC-----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC-----CEEEEEEcCCCc-
Q 015301 51 DGSFFVAAS-QE-----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC-----AIVNIVDVGSSA- 118 (409)
Q Consensus 51 ~~~~l~t~~-~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~~w~~~~~~- 118 (409)
++.+++.|+ .+ ..+.+||..++. .............-..+. .++..++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE-WSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe-EEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 455666666 32 368899988763 222111111111111222 256777777754 368899988776
Q ss_pred --cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCCCeeeeEEcCCCC-CeEEE
Q 015301 119 --RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKCSLRIPAHKS-DVNTV 190 (409)
Q Consensus 119 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~-~v~~~ 190 (409)
........... .....+.+ +++.++.|+.+ ..+.+||..+.+....-..... .-.++
T Consensus 91 ~~W~~~~~~p~~r-------------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 155 (301)
T 2vpj_A 91 GVWYSVAPMNVRR-------------GLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL 155 (301)
T ss_dssp CCCEEECCCSSCC-------------BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred CeeEECCCCCCCc-------------cceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE
Confidence 33222211110 01122222 66777777653 4688999987764432211111 11223
Q ss_pred EEeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEeeC
Q 015301 191 CFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDI 260 (409)
Q Consensus 191 ~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 260 (409)
+.. ++.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.+ ..+.+||+
T Consensus 156 ~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 156 VVA--SGVIYCLGGYDGLNILNSVEKYDPHT--GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EEE--CCEEEEECCCCCCcccceEEEEeCCC--CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeC
Confidence 332 56777777754 3578888641 111222111111111122222 56677777654 35788887
Q ss_pred CC
Q 015301 261 RK 262 (409)
Q Consensus 261 ~~ 262 (409)
.+
T Consensus 230 ~~ 231 (301)
T 2vpj_A 230 RT 231 (301)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.06 E-value=0.0023 Score=52.46 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=36.3
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCC-----eEEEEecCCCc
Q 015301 324 AQKYIYTGSSD-----NSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDC-----NIVRWEIPGIG 388 (409)
Q Consensus 324 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~ 388 (409)
++++++.|+.+ ..+.+||..+.+-...-.........-+...++++++.|+.++ .+.+||+.+..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 46777777654 3689999877643221111111111112223667777777553 48899987653
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=4.1e-05 Score=70.68 Aligned_cols=203 Identities=10% Similarity=-0.063 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCC---eeeeeeeecccccceEEEEEeCCCCcEE-EEEecCCEEEEEEcC
Q 015301 41 SRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKN---WKIQKDIETKALRWTITDTSLSPDQRFL-VYASICAIVNIVDVG 115 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~~w~~~ 115 (409)
..+..++|++.+..|+.+. ..+.|+.+++... ......... . ...+..|++.+.+..| ++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-C-C--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-C-CCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence 4567889998776666553 4578999998751 111111111 1 1135568888654444 444556789999887
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEE-cCCCCCeEEEEE
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRI-PAHKSDVNTVCF 192 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~ 192 (409)
......+.... ......+++.|.+.+|+.+.. .+.|.++++.... ...+ ...-.....|++
T Consensus 484 g~~~~~l~~~~---------------~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlav 547 (699)
T 1n7d_A 484 GVKRKTLFREQ---------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITL 547 (699)
T ss_dssp SCCEEEECCCS---------------SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEE
T ss_pred CCceEEEEeCC---------------CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEE
Confidence 55332221100 013567888886665655543 2678887775332 2222 222345678999
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
+|..+.++++-+..+.|..+++.. .....+............|++..+ .++++....+.|..+|..++.
T Consensus 548 d~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 548 DLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred eccCCEEEEEecCCCeEEEEccCC--CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 955566666766778899999741 111111111111122345555443 455555567789988876543
No 306
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.95 E-value=0.0053 Score=50.49 Aligned_cols=188 Identities=12% Similarity=0.091 Sum_probs=94.2
Q ss_pred CCCCEEEEEeCC----CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----C-----CEEEEEEcCC
Q 015301 50 NDGSFFVAASQE----SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----C-----AIVNIVDVGS 116 (409)
Q Consensus 50 ~~~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~~w~~~~ 116 (409)
-++.+++.|+.+ ..+.+||..+.. .............-..+.+ ++..++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGT-WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCe-EeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 356677777632 468899988763 2221111111111112222 5677777765 2 3578888887
Q ss_pred CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-----CeEEEEECCCCeeeeE--EcCCCCCeEE
Q 015301 117 SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-----NFIYVYDLQANKCSLR--IPAHKSDVNT 189 (409)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~v~~ 189 (409)
.+........... .....+.+ +++.++.|+.+ ..+.+||..+.+.... ++..... .+
T Consensus 100 ~~W~~~~~~p~~r-------------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~ 163 (308)
T 1zgk_A 100 NQWSPCAPMSVPR-------------NRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VG 163 (308)
T ss_dssp TEEEECCCCSSCC-------------BTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CE
T ss_pred CeEeECCCCCcCc-------------cccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eE
Confidence 7644332221110 01122222 67777777654 4688999987764432 1211111 12
Q ss_pred EEEeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEee
Q 015301 190 VCFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWD 259 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd 259 (409)
++.. ++.+++.|+.+ ..+.+||+.. .....+..+.........+.+ ++++++.|+.+ ..+.+||
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 237 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPER--NEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYD 237 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCC--CeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEe
Confidence 2332 56777777754 4578888641 111111111111111222223 56677777654 4577888
Q ss_pred CCC
Q 015301 260 IRK 262 (409)
Q Consensus 260 ~~~ 262 (409)
+.+
T Consensus 238 ~~~ 240 (308)
T 1zgk_A 238 VET 240 (308)
T ss_dssp TTT
T ss_pred CCC
Confidence 765
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.93 E-value=0.0049 Score=50.73 Aligned_cols=145 Identities=10% Similarity=0.139 Sum_probs=71.6
Q ss_pred CCcEEEEEecC----CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe----c----
Q 015301 96 DQRFLVYASIC----AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS----D---- 163 (409)
Q Consensus 96 ~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d---- 163 (409)
++..++.|+.+ ..+.+||..+.+........... .. ...+.+ ++..++.|+. +
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---------~~----~~~~~~--~~~lyv~GG~~~~~~~~~~ 88 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR---------SG----LAGCVV--GGLLYAVGGRNNSPDGNTD 88 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC---------BS----CEEEEE--TTEEEEECCEEEETTEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc---------cc----ceEEEE--CCEEEEECCCcCCCCCCee
Confidence 55666777632 35788888877654432221110 01 111222 6667777765 2
Q ss_pred -CeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC-----CeEEEecccccccCCceeeeeecccccee
Q 015301 164 -NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD-----SLCKVWDRRCFISKGRANGVLMGHLEGIT 235 (409)
Q Consensus 164 -~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 235 (409)
..+.+||..+.+.... ++..... .+++.. ++.+++.|+.+ ..+.+||+.. .....+..+........
T Consensus 89 ~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~ 163 (308)
T 1zgk_A 89 SSALDCYNPMTNQWSPCAPMSVPRNR-IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER--DEWHLVAPMLTRRIGVG 163 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBT-CEEEEE--TTEEEEECCEETTEECCCEEEEETTT--TEEEECCCCSSCCBSCE
T ss_pred cceEEEECCCCCeEeECCCCCcCccc-cEEEEE--CCEEEEEcCCCCCcccccEEEECCCC--CeEeECCCCCccccceE
Confidence 4688999887764332 1211111 222222 56777777644 3577888641 11111111111111112
Q ss_pred EEEEcCCCCeEEEEeCC-----CcEEEeeCCC
Q 015301 236 FIDSRRDGRYFISNGKD-----QTTKLWDIRK 262 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 262 (409)
.+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 2222 56677777654 3477777655
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.92 E-value=0.006 Score=50.13 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=55.7
Q ss_pred CcEEEEEec--CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec----CeEEEEE
Q 015301 97 QRFLVYASI--CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD----NFIYVYD 170 (409)
Q Consensus 97 ~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d 170 (409)
+..++.|+. ...+.+||..+.+-........... ....+.+ ++..++.|+.+ ..+.+||
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~-------------~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d 76 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR-------------DAACVFW--DNVVYILGGSQLFPIKRMDCYN 76 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCB-------------SCEEEEE--TTEEEEECCBSSSBCCEEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccc-------------eeEEEEE--CCEEEEEeCCCCCCcceEEEEe
Confidence 345556654 3568889988876543332221110 1122222 66677777754 6788999
Q ss_pred CCCCeeeeEEcCCCCCe-EEEEEeCCCCcEEEEeeCC------CeEEEeccc
Q 015301 171 LQANKCSLRIPAHKSDV-NTVCFADETGHLIFSGSDD------SLCKVWDRR 215 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 215 (409)
..+.+....-....... .+++. -++.+++.|+.+ ..+.+||+.
T Consensus 77 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 77 VVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 98876543322111111 12222 256777777765 458888864
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.92 E-value=0.0073 Score=50.94 Aligned_cols=268 Identities=7% Similarity=0.108 Sum_probs=164.6
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
+..|.|-|+..+....+.. . . --+.-.+|..+.||.-. ...+.++|+++........+.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrp-i-~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP-I-S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE-C-C----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCeEEEEECCCCCcceecc-c-c----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence 3478888988764442211 1 1 12244688888888765 7899999999887655544433
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC----CCCeEEEEEeCCCCcEEEEee-------CCCe
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH----KSDVNTVCFADETGHLIFSGS-------DDSL 208 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~ 208 (409)
+|.-=.|-.+. .|+..+ +..|+-|++.. ..+++.+..| ...|..-..+ ++.++++..+ -.|.
T Consensus 107 ---~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 107 ---DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp ---CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSSEEEEEEEEEETTEEEEE
T ss_pred ---CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC-CCCCeEEEEeecccCCcccce
Confidence 24444555444 344443 57899999964 3455555443 3456666777 7777776543 2467
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEcCCC---CeEEEEeC---CCcEEEeeCCCCc-ccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDG---RYFISNGK---DQTTKLWDIRKMS-SNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 281 (409)
+.+|.. .....+.+.+|......+.+..+. ..++.+.. .+.+++.++.... .......
T Consensus 181 mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k---------- 245 (494)
T 1bpo_A 181 MQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---------- 245 (494)
T ss_dssp EEEEES-----TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC----------
T ss_pred EEEeec-----cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc----------
Confidence 889985 456667788887766555543221 23343433 2688888886531 1111100
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeee
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
+.+..+-... .......++..|+.-..+..-+.-|.|++||++++.++..-+-...+|..-
T Consensus 246 ----------------k~vdv~fppe---~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t 306 (494)
T 1bpo_A 246 ----------------KAVDVFFPPE---AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (494)
T ss_dssp ----------------EEEECCCCTT---STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ----------------eeeeeeCCcc---cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence 0000000000 001122344567777889999999999999999999998888777777766
Q ss_pred EEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
+-+....=++.....|.|.--.+++..
T Consensus 307 ~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 307 APHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cccCCCCcEEEEccCceEEEEEEcccc
Confidence 666655556666688888877776644
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.89 E-value=0.022 Score=55.71 Aligned_cols=192 Identities=9% Similarity=-0.007 Sum_probs=99.6
Q ss_pred CCCeEEEEECCC------CCEEEEEeC-CCcEEEEEcCCCeeeeeeeecccccceEEEEEeC--CCCcEEEEEecCCEEE
Q 015301 40 NSRVYTSQFSND------GSFFVAASQ-ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLS--PDQRFLVYASICAIVN 110 (409)
Q Consensus 40 ~~~v~~~~~s~~------~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~ 110 (409)
...|.|+++.|. ++++|.|.. |++++|+++++.+.+... .... ...+.++.+. ....+|.+|-.||.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~-~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE-MLGG-EIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE-ECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE-ECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 568999999863 468999996 999999999875444322 1211 1123333332 2456888999999887
Q ss_pred EEEcCC--CccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 111 IVDVGS--SARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 111 ~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
-+.++. +........ +.+ ..++.-..+...+..-+.+..+....++.-+ ++.... +.....+.
T Consensus 631 ~~~~d~~tg~l~d~r~~--------~LG-----~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~ 695 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKV--------TLG-----TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVN 695 (1158)
T ss_dssp EEEECTTTCCEEEEEEE--------ECC-----SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCC
T ss_pred EEEEcCCCCccccceeE--------EcC-----CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhc
Confidence 666543 222111000 101 1134333343334333333334544455433 332221 11222343
Q ss_pred EE-EEeCCC-CcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 189 TV-CFADET-GHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 189 ~~-~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
.+ .|+... .+-++..+ ++.++|..+... ..-....+ .-...+..++++|+.+.++.+..+
T Consensus 696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~--~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEI--QKLHIRTV-PLYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp EEEEECCSSSTTEEEEEC-SSCEEEEEECCS--SSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred eEeccCcccCCCcEEEEc-CCceEEEEeccc--CCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEe
Confidence 33 343211 23444444 455888886421 12222222 234578899999988877766543
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.89 E-value=0.0076 Score=50.19 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=88.1
Q ss_pred EEEEEeCCCCcEEEEE------------ecCCEEEEEEcCCCccccccceeceeeeeeeecC-CCCcceeeEEEEEcC--
Q 015301 88 ITDTSLSPDQRFLVYA------------SICAIVNIVDVGSSARESLANVTEIHKGLDFSAD-GDEDEFGIFSVKFST-- 152 (409)
Q Consensus 88 v~~~~~s~~~~~l~~~------------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-- 152 (409)
...+...|+|..++++ ..+|.|.++|..+...... . +.+... ..........+.+.+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~-------l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-E-------LEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-E-------CEEECSSCCGGGCCEEEEEEEECT
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-E-------EEccCCCCCcCceeeeeeEEEECC
Confidence 4456667776554444 2689999999874322110 0 111110 011223456666655
Q ss_pred CCC-eEEEEEe---cCeEEEEECCCC--e--eeeEEcCC-CCCeEEEEEeCCCCcEEEEee-----------------CC
Q 015301 153 DGQ-ELVAAGS---DNFIYVYDLQAN--K--CSLRIPAH-KSDVNTVCFADETGHLIFSGS-----------------DD 206 (409)
Q Consensus 153 ~~~-~l~~~~~---d~~i~v~d~~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~d 206 (409)
++. +|+++.. +..|.+|++... . .+..+.+. -...+++++. +++.+.++.. ..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~-~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe-CCCCEEecCCcEeCCcccccchhhccCCc
Confidence 343 4544432 457777776543 2 12233322 2457899998 7788777654 12
Q ss_pred CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCC
Q 015301 207 SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRK 262 (409)
Q Consensus 207 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 262 (409)
|.|.-+|. ++ ...+...-...+.++|+||++.|+.+. ..+.|..|++..
T Consensus 203 g~vyr~d~------~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 203 SFVTYYSP------ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECT------TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cEEEEEEC------Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 44555552 22 223333345678999999998777665 467899999864
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.82 E-value=0.0038 Score=52.52 Aligned_cols=123 Identities=15% Similarity=0.221 Sum_probs=80.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeee-----------eeeeccc----ccceEEEEEeCCC---CcEEEEE
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQ-----------KDIETKA----LRWTITDTSLSPD---QRFLVYA 103 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-----------~~~~~~~----~~~~v~~~~~s~~---~~~l~~~ 103 (409)
.|..+..||+|++||..+. ..|.|-.+..+.... ....... ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6889999999999999875 479998887432111 1111111 2457999999995 5689999
Q ss_pred ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE--ecCeEEEEE
Q 015301 104 SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG--SDNFIYVYD 170 (409)
Q Consensus 104 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d 170 (409)
..|+.|++||+........ ....... .|..+ .....|.+++|.+++-.|.+.+ ..|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~--~fg~d--~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNN--SFGLD--ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCS--EEESC--SSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhcccc--ccCCC--cccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999999999987332222 1111111 12111 1224689999999887777765 678776543
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.81 E-value=0.0069 Score=50.43 Aligned_cols=200 Identities=10% Similarity=0.100 Sum_probs=109.8
Q ss_pred CeEEEEECCCCCEEEEEe------------CCCcEEEEEcCCCe-eeeeeee----cccccceEEEEEeCC--CCc-EEE
Q 015301 42 RVYTSQFSNDGSFFVAAS------------QESNIKVYNVDKNW-KIQKDIE----TKALRWTITDTSLSP--DQR-FLV 101 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~------------~d~~i~vw~~~~~~-~~~~~~~----~~~~~~~v~~~~~s~--~~~-~l~ 101 (409)
..-.++..|+|..+++++ .+|.|.++|.++.. ....... ..........+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 445667788876555542 68999999987431 1111111 111233567777755 343 454
Q ss_pred EEe-c--CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-----------------
Q 015301 102 YAS-I--CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG----------------- 161 (409)
Q Consensus 102 ~~~-~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------------- 161 (409)
++. . +..|.+|+++........ ... +.. ..-...+.+.+.++|.+.++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~--~~~-----~~g---~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLH--LKT-----IRH---KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEE--EEE-----ECC---TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEE--Eec-----ccc---CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 442 2 567888887654321110 000 000 1122588999999998666543
Q ss_pred ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEe-eCCCeEEEecccccccCCce--eeeeeccccceeEEE
Q 015301 162 SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSG-SDDSLCKVWDRRCFISKGRA--NGVLMGHLEGITFID 238 (409)
Q Consensus 162 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~~~ 238 (409)
..|.|.-+|. ++.. .+...-...+.++|+ |+++.|+.+ +..+.|..|++.. .+.. ...+ ...+....++
T Consensus 201 ~~g~vyr~d~--~~~~-~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~---~g~l~~~~~~-~~~g~PDGi~ 272 (355)
T 3sre_A 201 AWSFVTYYSP--NDVR-VVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHA---NWTLTPLRVL-SFDTLVDNIS 272 (355)
T ss_dssp CCEEEEEECT--TCCE-EEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECT---TSCEEEEEEE-ECSSEEEEEE
T ss_pred CccEEEEEEC--CeEE-EeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECC---CCcEecCEEE-eCCCCCceEE
Confidence 1245555554 3322 222233457899999 777666554 4678899999752 1211 1222 2245667888
Q ss_pred EcC-CCCeEEEEeCC-CcEEEee
Q 015301 239 SRR-DGRYFISNGKD-QTTKLWD 259 (409)
Q Consensus 239 ~~~-~~~~l~~~~~d-g~i~iwd 259 (409)
+.+ +|++.+++..+ +.|..|+
T Consensus 273 vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 273 VDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp ECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCcEEEEecCCceEEEEEC
Confidence 988 58877766544 3444443
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.77 E-value=0.011 Score=48.48 Aligned_cols=186 Identities=11% Similarity=0.093 Sum_probs=92.4
Q ss_pred CEEEEEeC--CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC----CEEEEEEcCCCcccccccee
Q 015301 53 SFFVAASQ--ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC----AIVNIVDVGSSARESLANVT 126 (409)
Q Consensus 53 ~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~~~~ 126 (409)
.+++.|+. ...+.+||..++. .............-..+.+ ++..++.|+.+ ..+.+||..+.+........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYS-WTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTE-EEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCC-EecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 45556654 3568899988763 2221111111111122222 56777777754 57888998877644332221
Q ss_pred ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec------CeEEEEECCCCeeeeEEcCCCC-CeEEEEEeCCCCcE
Q 015301 127 EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD------NFIYVYDLQANKCSLRIPAHKS-DVNTVCFADETGHL 199 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 199 (409)
... .....+.+ +++.++.|+.+ ..+.+||..+.+....-..... .-.+++.. ++.+
T Consensus 90 ~~r-------------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 152 (306)
T 3ii7_A 90 TPR-------------DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLI 152 (306)
T ss_dssp SCC-------------BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred ccc-------------cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEE
Confidence 110 01122222 67777777765 4689999988765432111111 11122332 5667
Q ss_pred EEEeeC---------CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC-----CcEEEeeCCC
Q 015301 200 IFSGSD---------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD-----QTTKLWDIRK 262 (409)
Q Consensus 200 l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 262 (409)
++.|+. -..+.+||+.. .....+..+.........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPAT--ETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EEECCCCCCCCcccccceEEEeCCCC--CeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 777764 34478888641 111222211111111122222 56677777654 3577787765
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.77 E-value=0.036 Score=54.27 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=98.6
Q ss_pred CCeEEEEEe----------cCeEEEEECCCCeeeeEE-cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 154 GQELVAAGS----------DNFIYVYDLQANKCSLRI-PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 154 ~~~l~~~~~----------d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
..++++|+. .|.|.++++..++..... ....++|++++-. ++.++++. ...+++|++. ..+
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~----~~~ 915 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWT----TEK 915 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEEC----TTS
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECC----CCc
Confidence 468888872 478999998755433221 2346889998865 45444443 4789999974 222
Q ss_pred eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccceee
Q 015301 223 ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLAT 302 (409)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (409)
.+..-..+-..+..+.....+++++.|..-..+.++..+... ..+..
T Consensus 916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~---------------------------------~~L~~ 962 (1158)
T 3ei3_A 916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME---------------------------------GNFEE 962 (1158)
T ss_dssp CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---------------------------------TEEEE
T ss_pred eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---------------------------------CeEEE
Confidence 222111111223333333347788888877777776544311 11222
Q ss_pred eecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-------c-eEEEeccC-CcceeeeE---EecC----
Q 015301 303 YKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-------A-QVAKLDFH-NAPVRDCC---WHPI---- 366 (409)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-------~-~~~~~~~~-~~~v~~~~---~s~~---- 366 (409)
+.......... +..+- +...++.+..+|.+.++..... + ....-.-| ...|+++. +.+.
T Consensus 963 ~a~D~~~~~vt----a~~~l-d~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~ 1037 (1158)
T 3ei3_A 963 IARDFNPNWMS----AVEIL-DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE 1037 (1158)
T ss_dssp EEECCSCBCEE----EEEEE-ETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC----
T ss_pred EEeecccccEE----EEEEE-ccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcc
Confidence 22221111111 11221 1346788899999999876541 1 11111223 34566664 3332
Q ss_pred -----cCeEEeecCCCeEEEEe
Q 015301 367 -----YPMLISSSWDCNIVRWE 383 (409)
Q Consensus 367 -----~~~l~s~~~dg~i~iw~ 383 (409)
...++-++.+|.|.+.-
T Consensus 1038 ~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1038 TSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp ---CEEEEEEEEETTSCEEEEE
T ss_pred ccccccceEEEEecCCEEEEEE
Confidence 23567777889888764
No 316
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.75 E-value=0.0049 Score=60.04 Aligned_cols=269 Identities=7% Similarity=0.111 Sum_probs=154.2
Q ss_pred CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCC
Q 015301 61 ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDE 140 (409)
Q Consensus 61 d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (409)
...|.|-|+..+..+.+. .- .--+.-.+|..+.||.-. ..++.|||+++........+.+
T Consensus 47 ~~~vvIidl~~~~~~~rr--pi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------------- 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR--PI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (1630)
T ss_pred CceEEEEECCCCCCcccc--cc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-------------
Confidence 347888888876443221 11 112334678888777665 7899999998877655554433
Q ss_pred cceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-CeeeeEEcCC----CCCeEEEEEeCCCCcEEEEee-------CCCe
Q 015301 141 DEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA-NKCSLRIPAH----KSDVNTVCFADETGHLIFSGS-------DDSL 208 (409)
Q Consensus 141 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~ 208 (409)
+|.-=.|-.+.. |+..+ +..|+.|++.. ..+++.+..| ...|..-..+ ++.++++..+ -.|.
T Consensus 107 ---~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 107 ---DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred ---CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeC-CCCCeEEEEeeccCCCcccce
Confidence 355555654443 33333 46799999964 2344444433 4566666666 6777776543 3578
Q ss_pred EEEecccccccCCceeeeeeccccceeEEEEc--CC-CCeEEEEeC---CCcEEEeeCCCC-cccccccccccccccccc
Q 015301 209 CKVWDRRCFISKGRANGVLMGHLEGITFIDSR--RD-GRYFISNGK---DQTTKLWDIRKM-SSNTTDNSRLRDYDWDYR 281 (409)
Q Consensus 209 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 281 (409)
+.+|.. .....+.+.+|......+... +. ...+..+.. .+.++|.++... .........
T Consensus 181 mQLyS~-----er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk--------- 246 (1630)
T 1xi4_A 181 MQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK--------- 246 (1630)
T ss_pred eeeeec-----ccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc---------
Confidence 899985 445556677777665444442 12 223332222 368888888653 111111000
Q ss_pred cccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCceEEEeccCCcceeee
Q 015301 282 WMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDC 361 (409)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~v~~~ 361 (409)
.+..+-.. ........++..|+.-..+..-+.-|.|++||+.++.++..-+-...+|...
T Consensus 247 -----------------~~~~~~~~---~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~ 306 (1630)
T 1xi4_A 247 -----------------AVDVFFPP---EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (1630)
T ss_pred -----------------cccccCCc---ccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEe
Confidence 00000000 0111122344566677788888999999999999999887666555666555
Q ss_pred EEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 362 CWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 362 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
+-+....=++.....|.|.--.+.+..-
T Consensus 307 ~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 307 APHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ccCCCCCceEEEcCCceEEEEEEccchh
Confidence 5444333344445677776666655443
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.73 E-value=0.014 Score=48.22 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=68.7
Q ss_pred EEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-----------cCeEE
Q 015301 99 FLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-----------DNFIY 167 (409)
Q Consensus 99 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~ 167 (409)
+++.|+ ..+.+||..+++-.. ........ .........++..++.|+. ...+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~-------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 70 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVP-------------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL 70 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSC-------------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEE
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCC-------------ccceEEEEECCEEEEEcCcccCCCCCccccccceE
Confidence 344555 678899998876432 11110000 1222233347777888874 12378
Q ss_pred EEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC--------CeEEEecccccccCCceeeeeeccccceeEE
Q 015301 168 VYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD--------SLCKVWDRRCFISKGRANGVLMGHLEGITFI 237 (409)
Q Consensus 168 v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 237 (409)
+||..+.+.... ++..... .+++.. ++.+++.|+.+ ..+.+||+.. .....+..+.........+
T Consensus 71 ~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 71 QFDHLDSEWLGMPPLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLS--FKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEETTTTEEEECCCBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEE
T ss_pred EecCCCCeEEECCCCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCC--CcEeECCCCCCcccceeEE
Confidence 899888764322 1111111 122332 56777777742 3578888641 1112222221111111222
Q ss_pred EEcCCCCeEEEEeC-C-----CcEEEeeCCC
Q 015301 238 DSRRDGRYFISNGK-D-----QTTKLWDIRK 262 (409)
Q Consensus 238 ~~~~~~~~l~~~~~-d-----g~i~iwd~~~ 262 (409)
. .++++++.|+. + ..+.+||..+
T Consensus 146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp E--ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred E--ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 2 35666777765 2 3577777765
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.72 E-value=0.014 Score=48.18 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=90.9
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----C-------CEEEEEEcCCCccccc
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----C-------AIVNIVDVGSSARESL 122 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~~w~~~~~~~~~~ 122 (409)
+++.|+ ..+.+||..++.-.......... .........+++.++.|+. + ..+.+||..+.+-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVP--KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSC--SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCC--ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 46999999887422211111111 1122223346778888873 1 1377888887764433
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec--------CeEEEEECCCCeeeeE--EcCCCCCeEEEEE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------NFIYVYDLQANKCSLR--IPAHKSDVNTVCF 192 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~ 192 (409)
........ ....+.+ +++.++.|+.+ ..+.+||..+.+.... ++..... .+++.
T Consensus 83 ~~~p~~r~-------------~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~ 146 (315)
T 4asc_A 83 PPLPSPRC-------------LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS 146 (315)
T ss_dssp CCBSSCEE-------------SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE
T ss_pred CCCCcchh-------------ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE
Confidence 22221110 1112222 66677777743 4688999988754332 2211111 22233
Q ss_pred eCCCCcEEEEeeC-C-----CeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCC
Q 015301 193 ADETGHLIFSGSD-D-----SLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIR 261 (409)
Q Consensus 193 ~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~ 261 (409)
. ++.+++.|+. + ..+.+||+.. .....+..+.........+.+ ++++++.|+.++ .+.+||+.
T Consensus 147 ~--~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 147 H--MDLVYVIGGKGSDRKCLNKMCVYDPKK--FEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp E--TTEEEEECCBCTTSCBCCCEEEEETTT--TEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred E--CCEEEEEeCCCCCCcccceEEEEeCCC--CeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 2 5667777776 2 3588888651 111222222111111122222 567777777654 47777776
Q ss_pred C
Q 015301 262 K 262 (409)
Q Consensus 262 ~ 262 (409)
+
T Consensus 221 ~ 221 (315)
T 4asc_A 221 D 221 (315)
T ss_dssp T
T ss_pred C
Confidence 5
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.72 E-value=0.0077 Score=50.72 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=96.6
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeeccc--ccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc-c-
Q 015301 49 SNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKA--LRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA-N- 124 (409)
Q Consensus 49 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-~- 124 (409)
+.+|..++.+- ++.||.-++.... ..+.+.... .-..|..+..+|+|++||..+ +..|.|-.+..+...... .
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 44566666553 4678888877542 223333321 111467799999999999886 568899988743211110 0
Q ss_pred -eeceeeeeeeecCCCCcceeeEEEEEcC---CCCeEEEEEecCeEEEEECCCC--eeeeEE---------cCCCCCeEE
Q 015301 125 -VTEIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQAN--KCSLRI---------PAHKSDVNT 189 (409)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~--~~~~~~---------~~~~~~v~~ 189 (409)
..-........+.......+|..+.|+| .+..|++-..|+.|++||+... ++. .+ ......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 0000011111111112356799999999 4568999999999999999752 122 22 123367889
Q ss_pred EEEeCCCCcEEEEee--CCCeEEEe
Q 015301 190 VCFADETGHLIFSGS--DDSLCKVW 212 (409)
Q Consensus 190 ~~~~~~~~~~l~~~~--~dg~i~iw 212 (409)
++|. .++-.|+..+ ..|.|+-.
T Consensus 185 ~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred EEEc-CCCcEEEEEecCCCCCEEEE
Confidence 9998 6777777755 77887654
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.55 E-value=0.029 Score=47.40 Aligned_cols=217 Identities=8% Similarity=0.055 Sum_probs=136.6
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 185 (409)
+.+|.+.|+.++.......+ ..-+.-.+|..+.++.-. ...+.|+|+++.+.+....- ..
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SS
T ss_pred CCeEEEEECCCCCcceeccc------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CC
Confidence 34788899987654322111 133456788888777664 78999999999988887764 44
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccc----cceeEEEEcCCCCeEEEEe-------CCCc
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHL----EGITFIDSRRDGRYFISNG-------KDQT 254 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~dg~ 254 (409)
+|.-=.|. +.+.|+..+ +..|+-|++. ....+.+.+..|. ..|..-..+++.++++..+ -.|.
T Consensus 107 ~VvfWkWi--s~~~l~lVT-~taVyHWsi~---~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 107 DVTFWKWI--SLNTVALVT-DNAVYHWSME---GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp CCCEEEEE--ETTEEEEEC-SSEEEEEESS---SSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred CceEEEec--CCCeEEEEc-CCeeEEeccc---CCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 67777887 445565554 4679999975 2445555555543 4566777788888876544 2467
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeec---CCCCEEEEE
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYS---TAQKYIYTG 331 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~~~ 331 (409)
+.+|..+. +.-+.+++|...- .+.... ....+++.+
T Consensus 181 mQLYS~er-----------------------------------~~sQ~ieGhaa~F------~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 181 MQLYSVDR-----------------------------------KVSQPIEGHAASF------AQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp EEEEESTT-----------------------------------CCEEEECCSEEEE------EEEECTTCSSEEEEEEEE
T ss_pred EEEeeccc-----------------------------------cccchheeeeeee------EEEecCCCCCCceEEEEE
Confidence 88888776 3345556664211 111110 011234444
Q ss_pred eC---CCeEEEEEccCC---c-----eEEEec----cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 332 SS---DNSVYIYDLVSG---A-----QVAKLD----FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 332 ~~---dg~v~i~d~~~~---~-----~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.. .+.++|.++... . ....+. ...+.-.++..|+....++.-+.-|.|+++|++++..
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 33 278999998542 1 111111 1234456788888888888888899999999998754
No 321
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.42 E-value=0.043 Score=46.15 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=75.0
Q ss_pred CCCEEEEEeCC-CcEEEEEcCCC-eeeeeeeecc-cccceEEEEEeCCCCcEEEEEec-C---------CEEEEEEcCCC
Q 015301 51 DGSFFVAASQE-SNIKVYNVDKN-WKIQKDIETK-ALRWTITDTSLSPDQRFLVYASI-C---------AIVNIVDVGSS 117 (409)
Q Consensus 51 ~~~~l~t~~~d-~~i~vw~~~~~-~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~~w~~~~~ 117 (409)
++++++.|+.+ ..+.+||.... .......... .....-..+.+ +++.++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56777777643 46888888631 1222221111 11111122222 5677777765 2 35888998877
Q ss_pred cccccccee-ceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec---------------------------------
Q 015301 118 ARESLANVT-EIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD--------------------------------- 163 (409)
Q Consensus 118 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------------------- 163 (409)
+-....... .. .....++. .+++.++.|+.+
T Consensus 97 ~W~~~~~~~p~~-------------r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 97 SWVKLMSHAPMG-------------MAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EEEECSCCCSSC-------------CSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred cEEECCCCCCcc-------------cccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 654433322 10 00112222 467777888753
Q ss_pred ------CeEEEEECCCCeeeeEEcCC-CCCe-EEEEEeCCCCcEEEEeeC------CCeEEEecc
Q 015301 164 ------NFIYVYDLQANKCSLRIPAH-KSDV-NTVCFADETGHLIFSGSD------DSLCKVWDR 214 (409)
Q Consensus 164 ------~~i~v~d~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~~l~~~~~------dg~i~iwd~ 214 (409)
..+.+||..+.+....-... ...- .+++.. ++.+++.|+. ...+..||+
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 57999999887654332111 1111 334443 5667777664 234666764
No 322
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.38 E-value=0.043 Score=45.28 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=51.1
Q ss_pred cCCCCeEEEEEe----cC-------eEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCC-------CeEE
Q 015301 151 STDGQELVAAGS----DN-------FIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDD-------SLCK 210 (409)
Q Consensus 151 ~~~~~~l~~~~~----d~-------~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~ 210 (409)
..++..++.|+. ++ .+.+||..+.+.... ++..... .+++.. ++.+++.|+.+ ..+.
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 456777777773 11 277889887764332 2211111 233333 56777777754 2477
Q ss_pred EecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCC------CcEEEeeCCC
Q 015301 211 VWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKD------QTTKLWDIRK 262 (409)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~ 262 (409)
+||+.. .....+..+........ ++. .++++++.|+.+ ..+.+||+.+
T Consensus 131 ~yd~~~--~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 131 CYDPVA--AKWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EEETTT--TEEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred EEeCCC--CCEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 777641 11111111111111111 222 356666766642 3477788765
No 323
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.37 E-value=0.08 Score=48.24 Aligned_cols=334 Identities=8% Similarity=-0.016 Sum_probs=167.8
Q ss_pred cceeeEEec-CceeEeec-c-ceEEEEeeecC-CCceeecCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeeeee
Q 015301 3 VGREVNYSG-RGRFSAAD-S-CHVLSRYLPVN-GPWKVDGMNSRVYTSQFSNDGSFFVAAS-QESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 3 ~~~~~~~s~-dg~~~~~~-~-~~~~~~~~~~~-~~~~l~~h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~ 77 (409)
+++.+++.| +|.+..+. + ...+.+..... ....+...-.....++++++++.|..+. ..+.|...+++.... ..
T Consensus 124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v 202 (628)
T 4a0p_A 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV 202 (628)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE
Confidence 467888887 45544443 1 23344333322 2334444456788999999877776654 457899999876533 22
Q ss_pred eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccccee-ceee--------------------------
Q 015301 78 DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVT-EIHK-------------------------- 130 (409)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~-~~~~-------------------------- 130 (409)
...... ....+++.. +..+++-...+.|...|..+++........ ....
T Consensus 203 ~~~~l~---~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~ 278 (628)
T 4a0p_A 203 IADDLP---HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHL 278 (628)
T ss_dssp EEECCS---CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSE
T ss_pred eeccCC---CceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchh
Confidence 222222 355677654 344444445677777775444321110000 0000
Q ss_pred ---------------eeeeecCCC-------------------------C---------cceeeEEEEEcCCCCeEEEEE
Q 015301 131 ---------------GLDFSADGD-------------------------E---------DEFGIFSVKFSTDGQELVAAG 161 (409)
Q Consensus 131 ---------------~~~~~~~~~-------------------------~---------~~~~v~~~~~~~~~~~l~~~~ 161 (409)
+..+..+.. . .-..+..++|.+....|+.+.
T Consensus 279 C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD 358 (628)
T 4a0p_A 279 CLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWID 358 (628)
T ss_dssp EEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEE
T ss_pred hhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEe
Confidence 000000000 0 001234455555444443332
Q ss_pred e-cCeEEEEECCCCeeeeEEcC------CCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeee-eccccc
Q 015301 162 S-DNFIYVYDLQANKCSLRIPA------HKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL-MGHLEG 233 (409)
Q Consensus 162 ~-d~~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~ 233 (409)
. .+.|+.+++........+.. ....+..+++....+++.++-+..+.|.+.++. +.....+ ......
T Consensus 359 ~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-----G~~~~~l~~~~l~~ 433 (628)
T 4a0p_A 359 SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-----GRSVGVVLKGEQDR 433 (628)
T ss_dssp TTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-----SCEEEEEEECTTCC
T ss_pred cCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-----CCeEEEEEeCCCCc
Confidence 2 34555555443222222221 233578899984446666677778889998863 3333232 233466
Q ss_pred eeEEEEcC-CCCeEEEEeCCC--cEEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeeccccee
Q 015301 234 ITFIDSRR-DGRYFISNGKDQ--TTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLR 310 (409)
Q Consensus 234 v~~~~~~~-~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (409)
...|++.| .|.++++-.... .|...++.. .....+-... .
T Consensus 434 Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG-----------------------------------~~~~~l~~~~-l- 476 (628)
T 4a0p_A 434 PRAVVVNPEKGYMYFTNLQERSPKIERAALDG-----------------------------------TEREVLFFSG-L- 476 (628)
T ss_dssp EEEEEEETTTTEEEEEEEETTEEEEEEEETTS-----------------------------------CSCEEEECSS-C-
T ss_pred eeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-----------------------------------CCcEEEEecc-C-
Confidence 88999999 455444433222 455544432 1111111100 0
Q ss_pred eeeEEEEeeeecCCCCEEEEEeC-CCeEEEEEccCCceEEEec-cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCc
Q 015301 311 TLIRCYFSPEYSTAQKYIYTGSS-DNSVYIYDLVSGAQVAKLD-FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIG 388 (409)
Q Consensus 311 ~~~~~~~~~~~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 388 (409)
.....++++++++.|+.+.. .+.|..+++.... ...+. .......+|+... +.++.+-...+.|...|..+++
T Consensus 477 ---~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 477 ---SKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp ---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSS
T ss_pred ---CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCC
Confidence 11234467776666666544 5889999985433 33332 2333456777655 4455555556777777766544
No 324
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.33 E-value=0.09 Score=47.90 Aligned_cols=199 Identities=8% Similarity=-0.030 Sum_probs=119.8
Q ss_pred CCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE-ecCCEEEEEEcCCC
Q 015301 40 NSRVYTSQFSNDGSFFV-AASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA-SICAIVNIVDVGSS 117 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~~w~~~~~ 117 (409)
-..+..++|++.+..|. +-..++.|..++++... ........ ...+..+++.+.+..|..+ ...+.|.+.+++..
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g--~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFG--LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCC--CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 35688999998766655 44457889999887642 22222211 1246778888765555444 55678999998754
Q ss_pred ccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe--cCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCC
Q 015301 118 ARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS--DNFIYVYDLQANKCSLRIPAHKSDVNTVCFADE 195 (409)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (409)
....... . .-.....+++.|....|+.+.. .+.|...++......... ..-.....+++.+.
T Consensus 113 ~~~~l~~--~-------------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~ 176 (628)
T 4a0p_A 113 HRQVLVW--K-------------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA 176 (628)
T ss_dssp TCEEEEC--S-------------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETT
T ss_pred cEEEEEe--C-------------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccc
Confidence 3221111 0 0113688999986556666543 467888887654433323 34567789999944
Q ss_pred CCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 196 TGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 196 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
.+.+.++-...+.|..+|+.. ... ..+.........+++.. +..+++-...+.|...|..++
T Consensus 177 ~~~LY~aD~~~~~I~~~d~dG----~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 177 KRRLYWTDLDTNLIESSNMLG----LNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTS----CSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred cCEEEEEECCCCEEEEEcCCC----Cce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 555555556678899998741 111 22333334455777764 444455445677888876544
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.33 E-value=0.051 Score=45.05 Aligned_cols=236 Identities=7% Similarity=0.054 Sum_probs=117.1
Q ss_pred cceeeEEecCceeEeecc-ceEEEEeeecCCCc-ee-------ecCCCCeEEEEECCC----CCEEEEE--eCCCcEEEE
Q 015301 3 VGREVNYSGRGRFSAADS-CHVLSRYLPVNGPW-KV-------DGMNSRVYTSQFSND----GSFFVAA--SQESNIKVY 67 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~-~~~~~~~~~~~~~~-~l-------~~h~~~v~~~~~s~~----~~~l~t~--~~d~~i~vw 67 (409)
..+.+++.|||+.+.+.. ...+..+.+..... .+ ....+....|+|+|+ +.+.++- ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 467899999999877755 44444443322221 11 223466889999995 4433432 234556666
Q ss_pred EcCCC----------eeeeeeee-cccccceEEEEEeCCCCcEEEEEec-------------CCEEEEEEcCCCcccccc
Q 015301 68 NVDKN----------WKIQKDIE-TKALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSARESLA 123 (409)
Q Consensus 68 ~~~~~----------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~~w~~~~~~~~~~~ 123 (409)
.+..+ +.+..... ...| ....|+|.|||.+.++.+. .|.|.-.+.+..-.. -.
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~-~n 189 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP-GN 189 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT-TC
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC-CC
Confidence 66541 11111111 1223 3467999999987776542 234433343321000 00
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCe------------------eeeEEcCCC
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG-SDNFIYVYDLQANK------------------CSLRIPAHK 184 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~------------------~~~~~~~~~ 184 (409)
.... .. .+. .++. ....++|+|+|.+.++=. .++.-.|-.+..+. ++..+..+.
T Consensus 190 Pf~~--~~-i~a---~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 190 PFPG--SP-VYS---YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp SSTT--CC-EEE---BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CCCC--Ce-EEe---eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 0000 00 000 0111 356789999876544321 12212222222221 122233222
Q ss_pred CCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEe
Q 015301 185 SDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNG 250 (409)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 250 (409)
.....++|. ++.+++..-..+.|....+............+.+....+..+...|||.++++..
T Consensus 263 ~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 466788887 4666666666666666665311111122223334456788999999998666543
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.31 E-value=0.0067 Score=46.01 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=61.9
Q ss_pred cceeeEEecCceeEeeccceEEEEeee-cCCCceeecCCCCe--------EEEEECCCCCEEEEEeCCCcEEEEEcCCCe
Q 015301 3 VGREVNYSGRGRFSAADSCHVLSRYLP-VNGPWKVDGMNSRV--------YTSQFSNDGSFFVAASQESNIKVYNVDKNW 73 (409)
Q Consensus 3 ~~~~~~~s~dg~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~v--------~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~ 73 (409)
+...++|+|||...+..+.. +.+.-+ ........+-...| .++.|.|+|.+.++ .||.|+-++-.+..
T Consensus 42 ~~~~laf~P~G~LYaV~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGVLNDK-IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEEETTE-EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEEeCCe-EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 34679999999876664433 333333 32223322223334 78999999998887 56888877754321
Q ss_pred eee-----eeeecccccceEEEEEeCCCCcEEEEEecCCEEEE
Q 015301 74 KIQ-----KDIETKALRWTITDTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 74 ~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
... ......+ =..+..+.|.|+|.+.++. |+.++-
T Consensus 119 ~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 119 TDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp TCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCceeccccEeccCC-CCceEEEEECCCceEEEEe--CCcEEe
Confidence 110 1111101 1257999999999888777 777543
No 327
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.29 E-value=0.1 Score=47.52 Aligned_cols=198 Identities=8% Similarity=-0.029 Sum_probs=109.4
Q ss_pred eeEEEEEcCCCCeEEEEE-ecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc
Q 015301 144 GIFSVKFSTDGQELVAAG-SDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR 222 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 222 (409)
.+.+++|.+.+..|+.+. ..+.|..+++........+...-..+..+++.+..++++++-+..+.|.+.++. +.
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~-----G~ 424 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN-----GT 424 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----SC
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCC-----CC
Confidence 367899998655666554 467899999875444333443345678899984466777776778899999864 22
Q ss_pred eeeee-eccccceeEEEEcCCCCeEEEEeC--CCcEEEeeCCCCcccccccccccccccccccccccccceeccccCccc
Q 015301 223 ANGVL-MGHLEGITFIDSRRDGRYFISNGK--DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQS 299 (409)
Q Consensus 223 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (409)
....+ ...-.....+++.|....|..... ...|...++... .
T Consensus 425 ~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~-----------------------------------~ 469 (619)
T 3s94_A 425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS-----------------------------------D 469 (619)
T ss_dssp SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----------------------------------S
T ss_pred eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC-----------------------------------c
Confidence 22222 223456789999986444444432 345555554431 1
Q ss_pred eeeeecccceeeeeEEEEeeeecCCCCEEEEEe-CCCeEEEEEccCCceEEEeccCCcceeeeEEecCcCeEEeecCCCe
Q 015301 300 LATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGS-SDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCN 378 (409)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 378 (409)
...+... .. .....++++++++.|+.+. ..+.|..+++........+...-....+|+...+ .+.++-...+.
T Consensus 470 ~~~l~~~-~l----~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~ 543 (619)
T 3s94_A 470 RVVLVNT-SL----GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRS 543 (619)
T ss_dssp CEEEECS-SC----SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSC
T ss_pred cEEEEeC-CC----CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCe
Confidence 1111100 00 1122446776565665554 4578888888544332222222223345665443 33334344566
Q ss_pred EEEEecCCC
Q 015301 379 IVRWEIPGI 387 (409)
Q Consensus 379 i~iw~~~~~ 387 (409)
|..-+..++
T Consensus 544 I~~~~k~~g 552 (619)
T 3s94_A 544 IERVHKRSA 552 (619)
T ss_dssp EEEEESSSC
T ss_pred EEEEEcCCC
Confidence 666666554
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.28 E-value=0.056 Score=44.53 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=88.3
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEec----CC-------EEEEEEcCCCccccc
Q 015301 54 FFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASI----CA-------IVNIVDVGSSARESL 122 (409)
Q Consensus 54 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~~w~~~~~~~~~~ 122 (409)
+++.|+. .+..||..++.-........... .-.++ ...++..++.|+. ++ .+.+||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r-~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPR-NHSSI-VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCS-SEEEE-ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCc-cceEE-EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4455543 38899988774322211111111 11222 3456778888873 12 277788877665433
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEec-------CeEEEEECCCCeeeeEE--cCCCCCeEEEEEe
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSD-------NFIYVYDLQANKCSLRI--PAHKSDVNTVCFA 193 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~ 193 (409)
....... . ....+.+ +++.++.|+.+ ..+.+||..+.+....- +..... .+++.
T Consensus 94 ~~~p~~r---------~----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~- 156 (318)
T 2woz_A 94 PPLPSAR---------C----LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS- 156 (318)
T ss_dssp SCBSSCB---------C----SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-
T ss_pred CCCCccc---------c----ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-
Confidence 2221111 0 1112222 66777777764 35888999877654321 111111 12222
Q ss_pred CCCCcEEEEeeC------CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC-----cEEEeeCCC
Q 015301 194 DETGHLIFSGSD------DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ-----TTKLWDIRK 262 (409)
Q Consensus 194 ~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 262 (409)
.++.+++.|+. -..+.+||+.. .....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKK--GDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTT--TEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCC--CEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 35677777764 23588888651 111222111111111122222 567777776532 466777765
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.25 E-value=0.055 Score=45.45 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCCeEEEEEe-c---------CeEEEEECCCCeeeeEEcCC-CCCeEEEEEeCCCCcEEEEeeCC
Q 015301 153 DGQELVAAGS-D---------NFIYVYDLQANKCSLRIPAH-KSDVNTVCFADETGHLIFSGSDD 206 (409)
Q Consensus 153 ~~~~l~~~~~-d---------~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d 206 (409)
+++.++.|+. + ..+.+||..+.+....-... .......+.. .++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 5677777766 2 46889999887644322111 1111111122 357777888754
No 330
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.24 E-value=0.09 Score=46.06 Aligned_cols=275 Identities=14% Similarity=0.145 Sum_probs=138.9
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeeeeeccccc----------------------ceE--EEEEeC---CCCcEEEEEe-cC
Q 015301 55 FVAASQESNIKVYNVDKNWKIQKDIETKALR----------------------WTI--TDTSLS---PDQRFLVYAS-IC 106 (409)
Q Consensus 55 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v--~~~~~s---~~~~~l~~~~-~d 106 (409)
+.+|+..|.|+|+-+.++..+..+-.+.... +.. ..+.+. -||++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6788899999999999886665533221100 000 122332 2577888776 45
Q ss_pred CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEc--CCCCeEEEEEe-------cCe------------
Q 015301 107 AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFS--TDGQELVAAGS-------DNF------------ 165 (409)
Q Consensus 107 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~-------d~~------------ 165 (409)
..|...+++..++.....+.... .+..++|- |+..|+++++. ||.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~--------------~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQ--------------AIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCS--------------CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCc--------------CcccccccccCCccEEEecceeeccCCCCCcccccCChhhceE
Confidence 67888888887766555544332 46666665 56666666654 222
Q ss_pred EEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCC---------------eEEEeccccc----------ccC
Q 015301 166 IYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDS---------------LCKVWDRRCF----------ISK 220 (409)
Q Consensus 166 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~----------~~~ 220 (409)
....|..+.+....+.. .+....+... +++.+.++.+.+. .+.++++... ...
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~-~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDAD-YTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCC-CCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 11123333333222211 1122222333 4455555544321 2444443210 000
Q ss_pred ---------------CceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCCCccccccccccccccccccccc
Q 015301 221 ---------------GRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWME 284 (409)
Q Consensus 221 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (409)
+.....+..-......+..+|||+++++++. +.++.++|+++........
T Consensus 297 g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k-------------- 362 (638)
T 3sbq_A 297 DSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK-------------- 362 (638)
T ss_dssp TCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC--------------
T ss_pred CCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc--------------
Confidence 0111111122234567889999999887765 7899999998632110000
Q ss_pred ccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC----------ceEEEeccC
Q 015301 285 YPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG----------AQVAKLDFH 354 (409)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~----------~~~~~~~~~ 354 (409)
+..+........+. . ......+|+++|....+-..|..|.-|++... ..+..+..|
T Consensus 363 -------~~~~~~~~~ae~e~---G----lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~ 428 (638)
T 3sbq_A 363 -------LADPRDVIVGEPEL---G----LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH 428 (638)
T ss_dssp -------CSCGGGGEEECCBC---C----SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS
T ss_pred -------ccCcccceEeeccC---C----CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc
Confidence 00000000001100 0 11234478888966666678999999999754 345555544
Q ss_pred Ccceeee-----EEecCcCeEEee
Q 015301 355 NAPVRDC-----CWHPIYPMLISS 373 (409)
Q Consensus 355 ~~~v~~~-----~~s~~~~~l~s~ 373 (409)
..+-.-. .-.+||++|++.
T Consensus 429 YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 429 YQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp SCEEEEEETTTTSTTCCSCEEEEE
T ss_pred cCCcccccCCCccCCCCccEEEEe
Confidence 3322111 124566666654
No 331
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.23 E-value=0.071 Score=44.69 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=59.9
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEe-
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGS- 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~- 162 (409)
....++|.|++++++ +..+|.|++++. +++ ....... ...........++++|+ +..|+++..
T Consensus 30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~-~~~~~~~----------v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLV-TERPGRLVLISP-SGK-KLVASFD----------VANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp CEEEEEEEETTEEEE-EETTTEEEEECS-SCE-EEEEECC----------CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCc-eEeeccc----------eeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 478899999998544 566699998873 332 1111110 00011225789999997 555555543
Q ss_pred ---c----CeEEEEECCCC-------eee-eEEcC-CCCCeEEEEEeCCCCcEEEEee
Q 015301 163 ---D----NFIYVYDLQAN-------KCS-LRIPA-HKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 163 ---d----~~i~v~d~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
+ ..|..++.... +.+ ..+.. .......++|. +++.++++.+
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG~Lyvt~G 153 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDGMLYITTG 153 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTSCEEEECC
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCCcEEEEEC
Confidence 2 57888887644 111 11221 11234679999 7888777643
No 332
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.21 E-value=0.074 Score=44.58 Aligned_cols=234 Identities=7% Similarity=-0.023 Sum_probs=115.0
Q ss_pred cceeeEEecCce-eEeeccceEEEEeeecCCCc--------eeecCCCCeEEEEECCC---CCEEEEE-eC-------CC
Q 015301 3 VGREVNYSGRGR-FSAADSCHVLSRYLPVNGPW--------KVDGMNSRVYTSQFSND---GSFFVAA-SQ-------ES 62 (409)
Q Consensus 3 ~~~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~--------~l~~h~~~v~~~~~s~~---~~~l~t~-~~-------d~ 62 (409)
.++.+++.|||+ ++.+.....+..+.+..... ......+....++|+|+ +..|..+ .. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 467899999999 76665444444443221110 11122346789999996 4444433 22 23
Q ss_pred cEEEEEcCCCe----eeeeeee-c-----ccccceEEEEEeCCCCcEEEEEec-------------CCEEEEEEcCCCcc
Q 015301 63 NIKVYNVDKNW----KIQKDIE-T-----KALRWTITDTSLSPDQRFLVYASI-------------CAIVNIVDVGSSAR 119 (409)
Q Consensus 63 ~i~vw~~~~~~----~~~~~~~-~-----~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~~w~~~~~~~ 119 (409)
.|..|+++... ....... . ..| ....++|.|||.+.++.+. .|.|.-++.+..-.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 46666665331 1111111 1 122 2457999999966665433 24566666543210
Q ss_pred cccccee--ceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEecC--eEEEEECCCCe-------------------
Q 015301 120 ESLANVT--EIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSDN--FIYVYDLQANK------------------- 175 (409)
Q Consensus 120 ~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~--~i~v~d~~~~~------------------- 175 (409)
....-.. .....+ +.. ++ .....++|.| ++. |.++.... .=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i-~a~---G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 177 DDNPFIKESGVRAEI-WSY---GI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TTCTTTTSTTSCTTE-EEE---CC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCcCCCCCCccE-EEE---cC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 0000000 000000 000 11 1378899999 554 54443321 11222111111
Q ss_pred ------------eeeEEcCCCCCeEEEEEeC------CCCcEEEEeeCCCeEEEecccccccCCceeee---eeccccce
Q 015301 176 ------------CSLRIPAHKSDVNTVCFAD------ETGHLIFSGSDDSLCKVWDRRCFISKGRANGV---LMGHLEGI 234 (409)
Q Consensus 176 ------------~~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~v 234 (409)
++..+. +...+..++|.. .++.++++....+.|...++. .+..... +......+
T Consensus 251 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~rp 325 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN----GDKVTEDGRILTDRGQRI 325 (353)
T ss_dssp TCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE----TTEEEEEEEESGGGCCCE
T ss_pred cccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeC----CCeEeeeEEcccCCCCce
Confidence 111222 234567788862 146677776677778777764 2222111 11223478
Q ss_pred eEEEEcCCCCeEEEE
Q 015301 235 TFIDSRRDGRYFISN 249 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~ 249 (409)
..+++.|||.++++.
T Consensus 326 ~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEECCCCcEEEEE
Confidence 899999999866643
No 333
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.17 E-value=0.068 Score=43.39 Aligned_cols=201 Identities=10% Similarity=0.086 Sum_probs=120.7
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccce
Q 015301 46 SQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANV 125 (409)
Q Consensus 46 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 125 (409)
.-.+|..+.+|.-. ..++.|+|+++..++....- .. .|.-=.|-.+. .|+..+ +..|+-|++..... ..+.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e---~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~--P~kv 142 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD---DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ--PVKM 142 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SS---CEEEEEECSSS-EEEEEE-SSEEEEEESSTTCC--CEEE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CC---ccEEEEecCCC-eEEEEc-CCcEEEEcccCCCC--Ccee
Confidence 44588888887765 67899999999877665432 22 56666776443 444443 56799999976321 1111
Q ss_pred eceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe-------cCeEEEEECCCCeeeeEEcCCCCCeEEEEEe--CCC
Q 015301 126 TEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS-------DNFIYVYDLQANKCSLRIPAHKSDVNTVCFA--DET 196 (409)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~ 196 (409)
.+.+..+ ....|.....+++.++++..+- .|.+.+|..+.+ ..+.+.+|...-..+... +..
T Consensus 143 FdR~~~L--------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~ 213 (365)
T 2xzh_A 143 FDRHSSL--------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEE 213 (365)
T ss_dssp EECCGGG--------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSC
T ss_pred eecchhc--------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCC
Confidence 1111111 1236888888999998776543 478899998754 456677876544444332 111
Q ss_pred CcEEEEeeC---CCeEEEecccccc-cCCc----eeeeeec---cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCc
Q 015301 197 GHLIFSGSD---DSLCKVWDRRCFI-SKGR----ANGVLMG---HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMS 264 (409)
Q Consensus 197 ~~~l~~~~~---dg~i~iwd~~~~~-~~~~----~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 264 (409)
..+++.+.. .+.+++-++.... .... ....+.. ..+-..++..++.-..+.....-|.+.+||++++.
T Consensus 214 ~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 214 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 223443332 2578888874220 1101 0010111 12334567778777788888999999999999843
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.17 E-value=0.082 Score=44.30 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEE---eccCCcceeeeEEecCcCeEEee-cCCCeEE
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSGAQVAK---LDFHNAPVRDCCWHPIYPMLISS-SWDCNIV 380 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~ 380 (409)
+|+++++.-..+.|...++..++.... +......+..+++.|||.++++. ..+|.|+
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence 477777777788888888876654332 22233578999999999866543 3455443
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.98 E-value=0.11 Score=42.38 Aligned_cols=102 Identities=12% Similarity=0.201 Sum_probs=57.6
Q ss_pred EEEcCCCCeEEEEEec--------------CeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEee--CCCeEEE
Q 015301 148 VKFSTDGQELVAAGSD--------------NFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGS--DDSLCKV 211 (409)
Q Consensus 148 ~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i 211 (409)
--+++++.+|+.+... ..|+..++...+... +. ... ...++ ++++.|+-.. .++.-.|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s-~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYAS-LIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEE-EETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEE-EeCCEEEEEeecCCCCceE
Confidence 3457788888877653 467888887665333 32 122 22566 4666776655 3455555
Q ss_pred ecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeC-CCcEEEeeCCC
Q 015301 212 WDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGK-DQTTKLWDIRK 262 (409)
Q Consensus 212 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 262 (409)
|.+.. .+.....+..+.. ..++++++.|.-.+. ...|...++..
T Consensus 132 y~~~~---dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 132 YRIRI---DGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEET---TSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEEEC---CCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 55431 2333333433322 346777888776654 55677777654
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.12 Score=42.68 Aligned_cols=193 Identities=8% Similarity=0.026 Sum_probs=98.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEe--CC-CCcEEEEE-ecCCEEEEEEcCCCccccccceece
Q 015301 53 SFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSL--SP-DQRFLVYA-SICAIVNIVDVGSSARESLANVTEI 128 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~--s~-~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~ 128 (409)
.+++.++.||.|.-.|.++++........ ...++....- .+ ++..++.. +.||.|..++..++...........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 46888899999999999998766654332 1012211110 01 23334443 5799999999887744322221111
Q ss_pred eeeeeeecCCCCcceeeEE---EEE-----cCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCC--CC-----eEEEEEe
Q 015301 129 HKGLDFSADGDEDEFGIFS---VKF-----STDGQELVAAGSDNFIYVYDLQANKCSLRIPAHK--SD-----VNTVCFA 193 (409)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~---~~~-----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~-----v~~~~~~ 193 (409)
.. ..++.. ... ...+..+++|+.+|.+...|+.+|+.+..+.... .. ..|....
T Consensus 89 v~-----------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~ 157 (339)
T 2be1_A 89 VS-----------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE 157 (339)
T ss_dssp HT-----------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------
T ss_pred ee-----------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccc
Confidence 00 001110 000 0134578899999999999999999998885321 10 0111110
Q ss_pred ----CCCCcEEEEeeCCCeEEEecccccccCCceeeeee-----cccc--ce-eEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 194 ----DETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-----GHLE--GI-TFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 194 ----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~--~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
...+..++.+..+..+.+.+ + .+. ..... .... ++ ..-..+.++.+ +.++.||.|..+|..
T Consensus 158 d~~~d~~~~~v~ig~~~y~v~~~~-~----sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~ 230 (339)
T 2be1_A 158 KIKLQECENMIVIGKTIFELGIHS-Y----DGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLD 230 (339)
T ss_dssp -------CCEEEEEEEEEECEECC-T----TSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECST
T ss_pred ccccccCCCeEEEecceEEEEEEC-C----CCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECC
Confidence 01235677776666666655 2 121 11110 0000 00 00001224555 446788888888877
Q ss_pred CCcc
Q 015301 262 KMSS 265 (409)
Q Consensus 262 ~~~~ 265 (409)
++..
T Consensus 231 ~G~~ 234 (339)
T 2be1_A 231 FRIA 234 (339)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 6554
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.88 E-value=0.13 Score=50.67 Aligned_cols=220 Identities=9% Similarity=0.043 Sum_probs=128.1
Q ss_pred CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCC
Q 015301 106 CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKS 185 (409)
Q Consensus 106 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 185 (409)
..+|.|.|+.++.......+ ..-+.-.+|..+.++.-. ..++.|+|+++...+....- ..
T Consensus 47 ~~~vvIidl~~~~~~~rrpi------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (1630)
T ss_pred CceEEEEECCCCCCcccccc------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CC
Confidence 34788889887654322211 123345677777666554 68999999998887776654 45
Q ss_pred CeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeecc----ccceeEEEEcCCCCeEEEEe-------CCCc
Q 015301 186 DVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGH----LEGITFIDSRRDGRYFISNG-------KDQT 254 (409)
Q Consensus 186 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~ 254 (409)
+|.-=.|. +.+.|+..+ +..|..|++.. ...+.+.+..| ...|..-..+++.++++..| -.|.
T Consensus 107 ~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 107 DVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred CceEEEec--CCCeeEEEc-CCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence 67777887 444555544 45799999842 34444445444 35677777788888876544 3477
Q ss_pred EEEeeCCCCcccccccccccccccccccccccccceeccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeC-
Q 015301 255 TKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSS- 333 (409)
Q Consensus 255 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 333 (409)
+.+|..+... -+.++||...-..... ....+...+++.+..
T Consensus 181 mQLyS~er~~-----------------------------------sQ~iegha~~F~~~~~---~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 181 MQLYSVDRKV-----------------------------------SQPIEGHAASFAQFKM---EGNAEESTLFCFAVRG 222 (1630)
T ss_pred eeeeeccccc-----------------------------------chhhhHhHhhhheecc---CCCCCCceEEEEEEec
Confidence 8888877622 2233333311100000 000011122222222
Q ss_pred --CCeEEEEEccCC---ceEE------Eec---cCCcceeeeEEecCcCeEEeecCCCeEEEEecCCCcc
Q 015301 334 --DNSVYIYDLVSG---AQVA------KLD---FHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 334 --dg~v~i~d~~~~---~~~~------~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 389 (409)
.+.++|.++... .+.. .+- .......++..++....+...+.-|.|.++|+.++..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 268888888542 1111 111 1123345677777777777778889999999998754
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.65 E-value=0.25 Score=45.72 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=83.1
Q ss_pred CCCCEEEEEeCC----CcEEEEEcCCCeeeeeeee-----cccccceEEEEEeCCCCcEEEEEecC------CEEEEEEc
Q 015301 50 NDGSFFVAASQE----SNIKVYNVDKNWKIQKDIE-----TKALRWTITDTSLSPDQRFLVYASIC------AIVNIVDV 114 (409)
Q Consensus 50 ~~~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~~w~~ 114 (409)
.++.+++.|+.+ ..+.+||..++.-...... .......-..+.+..+++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467778888753 4688899877632211101 11111112233333267788888743 35788888
Q ss_pred CCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecC--eEEEEECCCCeeeeEE-----cCCCCCe
Q 015301 115 GSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDN--FIYVYDLQANKCSLRI-----PAHKSDV 187 (409)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~-----~~~~~~v 187 (409)
.+.+........... .-.+++...+++.++.|+.++ .+.+||..+.+....- +......
T Consensus 476 ~t~~W~~~~~~p~~R--------------~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 476 KTREWSMIKSLSHTR--------------FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp TTTEEEECCCCSBCC--------------BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred CCCcEEECCCCCCCc--------------ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccce
Confidence 876544332221111 112233324788888887654 6999999887654321 1122222
Q ss_pred EEEEEeCCCCcEEEEeeC--C-----CeEEEeccc
Q 015301 188 NTVCFADETGHLIFSGSD--D-----SLCKVWDRR 215 (409)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~--d-----g~i~iwd~~ 215 (409)
.++.+....+.+++.|+. + ..+.+||+.
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~ 576 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD 576 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc
Confidence 345555233677777775 2 458888875
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.55 E-value=0.3 Score=45.21 Aligned_cols=156 Identities=8% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCCcEEEEEecC----CEEEEEEcCCCcccccc-ceeceeeeeeeecCCCCcceeeEEEEEcC-CCCeEEEEEec-----
Q 015301 95 PDQRFLVYASIC----AIVNIVDVGSSARESLA-NVTEIHKGLDFSADGDEDEFGIFSVKFST-DGQELVAAGSD----- 163 (409)
Q Consensus 95 ~~~~~l~~~~~d----g~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d----- 163 (409)
.++..++.|+.+ ..+.+||..+.+..... ..... ...... .-.+++..+ +++.++.|+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~--------~~p~~R-~~hs~~~~~~~~~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS--------EVPVAR-MCHTFTTISRNNQLLLIGGRKAPHQG 466 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS--------CCCCCC-BSCEEEEETTTTEEEEECCBSSTTCB
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC--------CCCccc-cceEEEEEccCCEEEEEcCCCCCCCc
Confidence 456777777753 35778888776543322 10000 000000 112233333 67777777753
Q ss_pred -CeEEEEECCCCeeeeE--EcCCCCCeEEEEEeCCCCcEEEEeeCCC--eEEEecccccccCCceeee---eecccccee
Q 015301 164 -NFIYVYDLQANKCSLR--IPAHKSDVNTVCFADETGHLIFSGSDDS--LCKVWDRRCFISKGRANGV---LMGHLEGIT 235 (409)
Q Consensus 164 -~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~---~~~~~~~v~ 235 (409)
..+.+||..+.+.... ++..... .+++.. .++.+++.|+.++ .+.+||+.. .....+.. .........
T Consensus 467 ~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t--~~W~~~~~~g~~p~~r~~~~ 542 (695)
T 2zwa_A 467 LSDNWIFDMKTREWSMIKSLSHTRFR-HSACSL-PDGNVLILGGVTEGPAMLLYNVTE--EIFKDVTPKDEFFQNSLVSA 542 (695)
T ss_dssp CCCCEEEETTTTEEEECCCCSBCCBS-CEEEEC-TTSCEEEECCBCSSCSEEEEETTT--TEEEECCCSSGGGGSCCBSC
T ss_pred cccEEEEeCCCCcEEECCCCCCCccc-ceEEEE-cCCEEEEECCCCCCCCEEEEECCC--CceEEccCCCCCCCccccee
Confidence 3588999988654332 2211111 223332 3678888887655 688888652 11111111 111112223
Q ss_pred EEEEcCC-CCeEEEEeC--C-----CcEEEeeCCCC
Q 015301 236 FIDSRRD-GRYFISNGK--D-----QTTKLWDIRKM 263 (409)
Q Consensus 236 ~~~~~~~-~~~l~~~~~--d-----g~i~iwd~~~~ 263 (409)
++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 3455544 666777765 2 35778887763
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.55 E-value=0.17 Score=38.53 Aligned_cols=154 Identities=12% Similarity=0.020 Sum_probs=83.3
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.+..++|+|++.+.++ .+|.+.-.+..+.....-... ...-+ .. + -..-.++.|.|+|.+.++ .||.|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG----~~--G-w~~F~a~~fD~~G~LYav--~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIG----NG--G-WNQFQFLFFDPNGYLYAV--SKDKL 109 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEE----CS--C-GGGCSEEEECTTSCEEEE--ETTEE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEec----cc--c-cccceEEEECCCCCEEEe--CCCEE
Confidence 5779999999987776 678766655544322211111 00000 00 0 001377899999987766 67999
Q ss_pred EEEECCCCeee-------eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCc----eeeeee-ccccce
Q 015301 167 YVYDLQANKCS-------LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGR----ANGVLM-GHLEGI 234 (409)
Q Consensus 167 ~v~d~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~-~~~~~v 234 (409)
+-++-.+.... ..-..--..+..+.+. |++.+.++. |+.++-.... ..... ....+- ..-...
T Consensus 110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P--~~~~~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPP--VSNQDNWLARATKIGQGGWDTF 184 (236)
T ss_dssp EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCC--SSTTCCHHHHCEEEESSSGGGE
T ss_pred EEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCC--CCCCcccccccceeccCCcceE
Confidence 88876432111 1112222567888998 888877766 7775433211 00100 011111 222344
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 235 TFIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 235 ~~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
..+.|.+++.+.++. +| ++|...
T Consensus 185 r~l~f~~~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 185 KFLFFSSVGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp EEEEECTTSCEEEEE--TT--EEEEES
T ss_pred EEEEECCCCcEEEEe--CC--eEEecC
Confidence 557799988876665 66 444443
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.28 E-value=0.5 Score=41.09 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEEe-
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAGS- 162 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~- 162 (409)
....|+|.|+|+++++-...+.|++++..++............ ...........++|+|+ +..|.++..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~-------~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV-------NDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-------CCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccc-------cccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 4679999999987776554457888876544332211111100 00011335789999995 555555543
Q ss_pred ------------cCeEEEEECCCC-------eeee-EEcC-CCCCeEEEEEeCCCCcEEEEee
Q 015301 163 ------------DNFIYVYDLQAN-------KCSL-RIPA-HKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 163 ------------d~~i~v~d~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
...|.-+++..+ +.+. .+.. .......|+|. +++.++++.+
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~G 162 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIG 162 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEEC
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEEC
Confidence 235666665322 1111 1221 12346899999 7888777654
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.51 Score=38.95 Aligned_cols=112 Identities=10% Similarity=-0.029 Sum_probs=66.0
Q ss_pred CeEEEEEecCeEEEEECCCCeeeeEEcCC-CCCeEEEEEe--CCCCcEEEEe-eCCCeEEEecccccccCCceeeeeec-
Q 015301 155 QELVAAGSDNFIYVYDLQANKCSLRIPAH-KSDVNTVCFA--DETGHLIFSG-SDDSLCKVWDRRCFISKGRANGVLMG- 229 (409)
Q Consensus 155 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~- 229 (409)
..+++++.||.|.-+|.++|+.+.+++.. ..++....-. +.++..++.. +.||.+..++.. .+.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~----~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH----QGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT----TEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC----CCcEEeeeccc
Confidence 36888999999999999999999888653 1233222111 0122344343 589999999854 3322222211
Q ss_pred ---cccceeE---EEE-c----CCCCeEEEEeCCCcEEEeeCCCCccccccc
Q 015301 230 ---HLEGITF---IDS-R----RDGRYFISNGKDQTTKLWDIRKMSSNTTDN 270 (409)
Q Consensus 230 ---~~~~v~~---~~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 270 (409)
...++.. ... . ..+..+++++.+|.+...|+++++......
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 1111111 000 0 035578889999999999999877655443
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.03 E-value=0.68 Score=40.27 Aligned_cols=116 Identities=9% Similarity=0.072 Sum_probs=63.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc------cccceEEEEEeCCC---CcEEEEEec-----
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK------ALRWTITDTSLSPD---QRFLVYASI----- 105 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~---~~~l~~~~~----- 105 (409)
-.....|+|.|+|+++++-...+.|++++..++.. ....... ........|+|+|+ +..|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34577999999999777654445788887654422 2211111 12346789999996 555554432
Q ss_pred --------CCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 106 --------CAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 106 --------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
...|.-++....... ......-+...+....| ....++|.|+|.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~----~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDT----LEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTE----EEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCC----cCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEECC
Confidence 234555555432110 00000001111111223 4788999999987776553
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.42 E-value=1.8 Score=40.67 Aligned_cols=284 Identities=8% Similarity=-0.015 Sum_probs=145.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccc
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARES 121 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~ 121 (409)
.|.++...+++..|..|... -+..++..++.. ...... ....|.++...+++.+.+ |+. +-+.+++..+.....
T Consensus 192 ~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~ 265 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQI-KQTEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQH 265 (758)
T ss_dssp CEEEEEEETTTTEEEEEEEE-EEEEEETTTTEE-EEEEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEE
T ss_pred eeEEEEEECCCCEEEEEECC-CCeEEcCCCCeE-EeccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEE
Confidence 48889888777755555543 488888876632 222111 123688888888887665 444 457788876654321
Q ss_pred ccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc-------CCCCCeEEEEEeC
Q 015301 122 LANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-------AHKSDVNTVCFAD 194 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~ 194 (409)
........ ..-....|.++....+|. |..|+..| +.++... .. ...+. .....|.++.-.
T Consensus 266 ~~~~~~~~--------~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D- 332 (758)
T 3ott_A 266 IIHDSRNI--------QSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRD- 332 (758)
T ss_dssp ECCCTTCT--------TSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEEC-
T ss_pred EEcCCCCc--------CcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEc-
Confidence 11100000 001122588888877776 55566666 5544332 21 11111 123457888776
Q ss_pred CCCcEEEEeeCCCeEEEecccccccCCceeeeee-------ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 195 ETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLM-------GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 195 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.++++.+ |+.+| +..++... ........+. .....|.++.-..+|++. .|. ++-|..||..+...
T Consensus 333 ~~g~lWi-Gt~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~-- 404 (758)
T 3ott_A 333 SKGFYWF-GGANG-LIRFTDPA--GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQF-- 404 (758)
T ss_dssp TTCCEEE-EETTE-EEEESCTT--SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEE--
T ss_pred CCCCEEE-eeCCc-ceeecccc--cccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcE--
Confidence 5565544 45555 55565321 0001111111 112457888877777644 455 45688898765221
Q ss_pred cccccccccccccccccccccceeccccCccceeeeecccc-eeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHSV-LRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG- 345 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~- 345 (409)
..+..... .......+.++..+++|. |-.|+..+-+.++|..+.
T Consensus 405 ---------------------------------~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~ 450 (758)
T 3ott_A 405 ---------------------------------IHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLM 450 (758)
T ss_dssp ---------------------------------EEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHH
T ss_pred ---------------------------------EEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEcccccc
Confidence 11110000 000001123333444554 555666666888886531
Q ss_pred ----ceE---EEec---c-CCcceeeeEEecCcCeEEe-ecCCCeEEEEecCCC
Q 015301 346 ----AQV---AKLD---F-HNAPVRDCCWHPIYPMLIS-SSWDCNIVRWEIPGI 387 (409)
Q Consensus 346 ----~~~---~~~~---~-~~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~~~~ 387 (409)
... ..+. + ....|.++...+++.+.+. ++. +-|..+|..+.
T Consensus 451 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~-~Gl~~~d~~~~ 503 (758)
T 3ott_A 451 QSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN-KGIDKINPRTR 503 (758)
T ss_dssp HCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC-SSEEEEETTTT
T ss_pred ccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC-CCcEEEeCCCC
Confidence 111 1111 1 1235888888888886653 444 44777887543
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.29 E-value=1.1 Score=37.28 Aligned_cols=253 Identities=16% Similarity=0.114 Sum_probs=120.9
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCC---CCeEEEEE--
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTD---GQELVAAG-- 161 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-- 161 (409)
....|+|.|+|.++++-...|.|++++..+++......... ...........++++|+ +..|.+..
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~---------v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG---------VSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT---------CCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc---------eeecCCCCceeeEeccccccCCEEEEEEec
Confidence 47899999999877766558999998865544321111100 00112335889999995 34454432
Q ss_pred -ecCeEEEEECCCC----------eeee-EEcC-CCCCeEEEEEeCCCCcEEEEeeC-------------CCeEEEeccc
Q 015301 162 -SDNFIYVYDLQAN----------KCSL-RIPA-HKSDVNTVCFADETGHLIFSGSD-------------DSLCKVWDRR 215 (409)
Q Consensus 162 -~d~~i~v~d~~~~----------~~~~-~~~~-~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~ 215 (409)
.++.|.-|.+..+ +.+. .+.. .......|+|. +++.++++.+. .|.|.-.+..
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 3456666665541 1111 2221 11234679998 78887777542 2444444432
Q ss_pred ccccCC----ceeeeeeccccceeEEEEcCCCCeEEEEe-CCCcEEEeeCCCCcccccccccccccccccccccccccce
Q 015301 216 CFISKG----RANGVLMGHLEGITFIDSRRDGRYFISNG-KDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYAR 290 (409)
Q Consensus 216 ~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
...... .......+|. ....++|+|+|.++++-. .|+.=.|--+.. -..+.|....-. ..
T Consensus 183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~----------G~nyGwP~~~g~--~~-- 247 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKP----------GDNYGWPEAEGK--GG-- 247 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECT----------TCBCCTTTCCSS--CC--
T ss_pred CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcC----------CCEecCCcccCC--CC--
Confidence 100000 0011112333 356788999877555432 232111111111 111112111000 00
Q ss_pred eccccCccceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCce----EEEeccCCcceeeeEEecC
Q 015301 291 RLKHPHDQSLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQ----VAKLDFHNAPVRDCCWHPI 366 (409)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~~~~~v~~~~~s~~ 366 (409)
......++..+..+. .....+ +|. +|.++...-..+.|....+..... ...+.+....+.+++..||
T Consensus 248 --~~~~~~P~~~~~~~~--~ap~G~----~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD 318 (347)
T 3das_A 248 --GSGFHDPVAQWSTDE--ASPSGI----AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG 318 (347)
T ss_dssp --CTTCCCCSEEECTTT--CCEEEE----EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET
T ss_pred --CccccCCcEecCCCC--CCCcce----EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC
Confidence 000011222222211 011111 222 355666555566676666654432 2334444568899999999
Q ss_pred cCeEEee
Q 015301 367 YPMLISS 373 (409)
Q Consensus 367 ~~~l~s~ 373 (409)
|.++++.
T Consensus 319 G~lyv~t 325 (347)
T 3das_A 319 DKLWLVT 325 (347)
T ss_dssp TEEEEEE
T ss_pred CcEEEEE
Confidence 9855554
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.08 E-value=1.1 Score=36.41 Aligned_cols=172 Identities=9% Similarity=0.082 Sum_probs=90.6
Q ss_pred CCCCCEEEEEe--CCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecC--------------CEEEEE
Q 015301 49 SNDGSFFVAAS--QESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASIC--------------AIVNIV 112 (409)
Q Consensus 49 s~~~~~l~t~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~~w 112 (409)
+++|.++.... .++.|+..+.+.. ...++.. -.+--+++++.+|..+... ..|+..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~-------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSN-------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEE-------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccC-------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 45677776654 2455666665543 2222211 1123457889888877643 367777
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEE----ecCeEEEEECCCCeeeeEEcCCCCCeE
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAG----SDNFIYVYDLQANKCSLRIPAHKSDVN 188 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~v~ 188 (409)
++...+...+.. -....|+++++.|+... ....|...++.... ...+..+..
T Consensus 94 ~~dg~~~~~l~~--------------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~--- 149 (302)
T 3s25_A 94 KRNGHGSTVLDP--------------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL--- 149 (302)
T ss_dssp ETTSCCCEEEEC--------------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC---
T ss_pred eCCCCcceEeec--------------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc---
Confidence 776664322211 11235777888888775 24567777776443 334443332
Q ss_pred EEEEeCCCCcEEEEeeC-CCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCC--cEEEeeCCC
Q 015301 189 TVCFADETGHLIFSGSD-DSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQ--TTKLWDIRK 262 (409)
Q Consensus 189 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 262 (409)
..++ ++++.|+-.+. ...|..-++. ... ...+.. +... ..+.|++.+|+-...++ .|..-++..
T Consensus 150 -~~~~-~~g~~iy~t~~g~~~Iy~~~l~----g~~-~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 -FTCN-TSDRYFYYNNPKNGQLYRYDTA----SQS-EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp -CCSE-EETTEEEEECTTTCCEEEEETT----TTE-EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred -eEee-EECCEEEEEeCCCceEEEEECC----CCC-EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 3455 44555554443 5667777653 222 222221 2222 23558888887665443 455555543
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.62 E-value=1.4 Score=38.85 Aligned_cols=114 Identities=10% Similarity=0.168 Sum_probs=66.9
Q ss_pred eEEEEEeCCCCcEEEEEe-cCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCe
Q 015301 87 TITDTSLSPDQRFLVYAS-ICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNF 165 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 165 (409)
....+..+|||+++++++ .+.++.++|++.-.......+......+.-.. .-.......+|.++|....+.--|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~---e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP---ELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC---BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec---cCCCcccEEEECCCCceEeeeeecce
Confidence 456788999999998876 57789999997532211100000000000000 01225788999999954444446999
Q ss_pred EEEEECCCC----------eeeeEEcCCCCCeEEEEEe-----CCCCcEEEEee
Q 015301 166 IYVYDLQAN----------KCSLRIPAHKSDVNTVCFA-----DETGHLIFSGS 204 (409)
Q Consensus 166 i~v~d~~~~----------~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~ 204 (409)
|.-|++... ..+.++..|-.+ -.+.-+ .+++++|++..
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 999998653 345556555433 233221 26788888865
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.72 E-value=4.3 Score=32.53 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=97.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARE 120 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~ 120 (409)
..|..++...+-. ++. . ||.|+.|-.....++...... ...|..++...+-. ++ -. +|.|..|-.......
T Consensus 63 ~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~---~~~v~~ia~G~~hs-~a-l~-~G~v~~wG~n~~gql 133 (282)
T 3qhy_B 63 SGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEA---RSGVDAIAAGAWAS-YA-LK-DGKVIAWGDDSDGQT 133 (282)
T ss_dssp SCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGG---SSSEEEEEEETTEE-EE-EE-TTEEEEEECCTTSTT
T ss_pred CCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCccc---CCCeEEEECcCCEE-EE-Ee-CCeEEEecCCCCCcC
Confidence 3577777654433 333 4 899999986654332221111 23577777654433 22 34 899999976543322
Q ss_pred cccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEE
Q 015301 121 SLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAHKSDVNTVCFADETGHLI 200 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 200 (409)
..... ....|..++...+. .+.-. ||.|+.|-......+..-..-...|..++.- ....+
T Consensus 134 g~~~~---------------~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G--~~hs~ 193 (282)
T 3qhy_B 134 TVPAE---------------AQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSL 193 (282)
T ss_dssp SCCGG---------------GGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred CCCcc---------------CCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEec--CCEEE
Confidence 11110 01136666654333 22233 7999999765422221111123567777765 33344
Q ss_pred EEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 201 FSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 201 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+. .||.|..|-.....+.+.+ ......|..++...... ++ .. ||.+..|-...
T Consensus 194 al--~~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~h~-~a-l~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 194 AL--KDGKVIAWGDNRYKQTTVP----TEALSGVSAIASGEWYS-LA-LK-NGKVIAWGSSR 246 (282)
T ss_dssp EE--ETTEEEEEECCTTSTTCCC----GGGGSSCCEEEECSSCE-EE-EE-TTEEEEESTTC
T ss_pred EE--ECCeEEEEECCCCCCCCCC----cccCCCceEEEcCCCEE-EE-EE-CCEEEEecCCC
Confidence 44 5999999975321111111 11234577777654433 33 33 99999997655
No 349
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=91.39 E-value=5.2 Score=32.85 Aligned_cols=210 Identities=8% Similarity=0.045 Sum_probs=112.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEE---cCCC------eeeeeeeecccccceEEEE-EeCC--CCcEEEEEecCCE
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYN---VDKN------WKIQKDIETKALRWTITDT-SLSP--DQRFLVYASICAI 108 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~---~~~~------~~~~~~~~~~~~~~~v~~~-~~s~--~~~~l~~~~~dg~ 108 (409)
+.+..+........|+.-+..|.++-.. +... ..+...+.... ...|.++ ...+ +..++++++.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 3444444444455565556667655443 3322 12112222222 2245544 4442 5789999999999
Q ss_pred EEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC--CCe---------ee
Q 015301 109 VNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ--ANK---------CS 177 (409)
Q Consensus 109 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~--~~~---------~~ 177 (409)
++--.+..-..... .....+.+.. ...+..+........++..+..|.+..+... .-. ..
T Consensus 121 iKr~~l~~~~~~~r----~G~~~i~lke-----~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~ 191 (327)
T 3uc1_A 121 VKKSKLTDFDSNRS----GGIVAVNLRD-----NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG 191 (327)
T ss_dssp EEEEEGGGGCCCCS----SCEESCBCCT-----TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEES
T ss_pred EEEeEHHHhhcccc----CceEEEEECC-----CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeee
Confidence 99888765332211 0011111111 1135555555555678888889998888776 211 11
Q ss_pred eEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC-----CceeeeeeccccceeEEEEcCCCCeEEEEeCC
Q 015301 178 LRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----GRANGVLMGHLEGITFIDSRRDGRYFISNGKD 252 (409)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 252 (409)
..+. ....|.++... +.+..++..+..|.++.-.+..+... +.....+....+.+..+....+...++..+.+
T Consensus 192 i~L~-~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 192 MRFN-IDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp SCCC-TTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred ecCC-CCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 1222 34567777766 45568888899999998876533221 11222222213344444444445567777778
Q ss_pred CcEEEeeCCC
Q 015301 253 QTTKLWDIRK 262 (409)
Q Consensus 253 g~i~iwd~~~ 262 (409)
|.+.-++...
T Consensus 270 G~~ir~~~~~ 279 (327)
T 3uc1_A 270 GGVIRTAARQ 279 (327)
T ss_dssp GCEEEEEGGG
T ss_pred CeEEEEehhh
Confidence 8877777654
No 350
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.96 E-value=9.9 Score=35.26 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=98.1
Q ss_pred eEEEE-ECCCCCEEEEE-e----CCCcEEEEEcCCCeeeeeeeecccccc------eEEEEEeCCCCcEEEEE-------
Q 015301 43 VYTSQ-FSNDGSFFVAA-S----QESNIKVYNVDKNWKIQKDIETKALRW------TITDTSLSPDQRFLVYA------- 103 (409)
Q Consensus 43 v~~~~-~s~~~~~l~t~-~----~d~~i~vw~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~------- 103 (409)
...+. ++|++++++.+ | +-..++++|+.+++.+...+. ...+. ....++|..++..+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 44455 89999987754 2 224699999999855533222 11100 11234676444444432
Q ss_pred ---ecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCe-----EEEEEe---cCeEEEEECC
Q 015301 104 ---SICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQE-----LVAAGS---DNFIYVYDLQ 172 (409)
Q Consensus 104 ---~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~---d~~i~v~d~~ 172 (409)
+....|+.|.+.+............. . . --.....++++++ +++.+. ...+.+.+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~---------~--~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPK---------E--Y-IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTK 277 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCT---------T--S-CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCC---------C--c-eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCC
Confidence 12346888888766433222211111 0 1 1223445566653 333331 2456676765
Q ss_pred C--CeeeeEEcCCCCCeEEEEEeCCCCcEEEEe----------eCCCeEEEecccccccC---Cceeee-e-ecccccee
Q 015301 173 A--NKCSLRIPAHKSDVNTVCFADETGHLIFSG----------SDDSLCKVWDRRCFISK---GRANGV-L-MGHLEGIT 235 (409)
Q Consensus 173 ~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~~~---~~~~~~-~-~~~~~~v~ 235 (409)
. ++. ..+..... ..+..+ .++.+++.. ...+.|...|+...... ...... + ......+.
T Consensus 278 ~~~~~~-~~l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 278 YKNLKL-QKINMPSD--ATLQGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSSCEE-EECCSCTT--CEEEEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCCcc-eEeecCCc--ceEeee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 3 332 22322222 122233 345555532 14677888887632110 111222 2 22334677
Q ss_pred EEEEcCCCCeEEEEeCCCc--EEEeeCCC
Q 015301 236 FIDSRRDGRYFISNGKDQT--TKLWDIRK 262 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~--i~iwd~~~ 262 (409)
.+.+..+ .++++...++. +.++|+.+
T Consensus 354 ~~~~~~~-~l~~~~~~~~~~~l~~~~~~~ 381 (711)
T 4hvt_A 354 FISTTKD-RVFLATYDNVVAKVVTFTLEN 381 (711)
T ss_dssp EEEECSS-CEEEEEEETTEEEEEEECEET
T ss_pred EEEEECC-EEEEEEEECCEEEEEEEECCC
Confidence 8888865 56666666664 56666543
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.45 E-value=10 Score=33.03 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=61.2
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCe---eeeeeee--cc----cccceEEEEEeCCC----CcEEEEEec-
Q 015301 41 SRVYTSQFSNDGS-FFVAASQESNIKVYNVDKNW---KIQKDIE--TK----ALRWTITDTSLSPD----QRFLVYASI- 105 (409)
Q Consensus 41 ~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~---~~~~~~~--~~----~~~~~v~~~~~s~~----~~~l~~~~~- 105 (409)
..-+.|+|.|||+ .|+++...|.|++++.+... .+..+.. .. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 45556678999999754321 1111100 00 11346789999996 333333221
Q ss_pred -C----------CEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEe
Q 015301 106 -C----------AIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGS 162 (409)
Q Consensus 106 -d----------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 162 (409)
+ ..|.-|.+....... ........-+.+......|. -..++|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~-~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQ-VDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTS-BCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCc-cCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCC
Confidence 1 145456665321100 00000001111222223343 578999999987776654
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.81 E-value=10 Score=32.13 Aligned_cols=166 Identities=9% Similarity=0.002 Sum_probs=75.6
Q ss_pred CCCeEEEEECC--CCCEEEEEeCCCc--EEEEEc-CCCeeeeeeee---ccc--------ccceEEEEEeCCC--CcEEE
Q 015301 40 NSRVYTSQFSN--DGSFFVAASQESN--IKVYNV-DKNWKIQKDIE---TKA--------LRWTITDTSLSPD--QRFLV 101 (409)
Q Consensus 40 ~~~v~~~~~s~--~~~~l~t~~~d~~--i~vw~~-~~~~~~~~~~~---~~~--------~~~~v~~~~~s~~--~~~l~ 101 (409)
...|.+|++.| ++.+++.+ ..|. -.||.. +.+........ ... ....|.++++.|. ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45699999998 55555444 3330 123333 33322222111 010 1125888999872 45566
Q ss_pred EEecCCEEEEEEcCCCccccccceeceeeeeeeec---CCCCcceeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeee
Q 015301 102 YASICAIVNIVDVGSSARESLANVTEIHKGLDFSA---DGDEDEFGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCS 177 (409)
Q Consensus 102 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~ 177 (409)
++...+.|...+-...................+.. ........+.++.+.|. ...++++..++.|...+- .++.-
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDW 211 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSC
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCc
Confidence 66656655443222211111110000000000000 00011225888999883 455666665555554432 22221
Q ss_pred eEEcC-----C--------CCCeEEEEEeCCCCcEEEEeeCCC
Q 015301 178 LRIPA-----H--------KSDVNTVCFADETGHLIFSGSDDS 207 (409)
Q Consensus 178 ~~~~~-----~--------~~~v~~~~~~~~~~~~l~~~~~dg 207 (409)
..+.. + ...+.++++.|.++..|+++...+
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 11110 0 124889999865567777776655
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.51 E-value=8.3 Score=30.86 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeE
Q 015301 87 TITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFI 166 (409)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 166 (409)
.|..++.... ..++. . ||.|..|-............ ....|..++...+.. ++. . ||.|
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~---------------~~~~i~~ia~G~~hs-~~l-~-~G~v 83 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAA---------------TQSGVDAIAAGNYHS-LAL-K-DGEV 83 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGG---------------GGSCCCEEEECSSEE-EEE-E-TTEE
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCcc---------------CCCCEEEEEeCCCEE-EEE-E-CCEE
Confidence 4666666543 23333 4 89999997655432221110 011466666654432 333 4 8999
Q ss_pred EEEECCCCeeeeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccCCceeeeeeccccceeEEEEcCCCCeE
Q 015301 167 YVYDLQANKCSLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVLMGHLEGITFIDSRRDGRYF 246 (409)
Q Consensus 167 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 246 (409)
+.|-....-.+..-..-...|..++.. .+ ..+.-. ||.|..|-... .++. .........|..++...+. .
T Consensus 84 ~~wG~n~~Gqlg~P~~~~~~v~~ia~G-~~--hs~al~-~G~v~~wG~n~---~gql-g~~~~~~~~i~~i~~G~~~--~ 153 (282)
T 3qhy_B 84 IAWGGNEDGQTTVPAEARSGVDAIAAG-AW--ASYALK-DGKVIAWGDDS---DGQT-TVPAEAQSGVTALDGGVYT--A 153 (282)
T ss_dssp EEEECCTTSTTCCCGGGSSSEEEEEEE-TT--EEEEEE-TTEEEEEECCT---TSTT-SCCGGGGSSEEEEEECSSE--E
T ss_pred EEeeCCCCCCCCCCcccCCCeEEEECc-CC--EEEEEe-CCeEEEecCCC---CCcC-CCCccCCCCeEEEEcccCE--E
Confidence 999765422211111113468888776 33 333344 99999997532 1111 1111233457777665433 2
Q ss_pred EEEeCCCcEEEeeCCC
Q 015301 247 ISNGKDQTTKLWDIRK 262 (409)
Q Consensus 247 ~~~~~dg~i~iwd~~~ 262 (409)
+.-. ||.|..|-...
T Consensus 154 ~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 154 LAVK-NGGVIAWGDNY 168 (282)
T ss_dssp EEEE-TTEEEEEECCT
T ss_pred EEEE-CCEEEEecCCC
Confidence 2233 79999997665
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.03 E-value=11 Score=30.83 Aligned_cols=169 Identities=12% Similarity=0.118 Sum_probs=93.6
Q ss_pred CCCeEEE-EECC--CCCEEEEEeCCCcEEEEEcCCCeee----eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEE
Q 015301 40 NSRVYTS-QFSN--DGSFFVAASQESNIKVYNVDKNWKI----QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIV 112 (409)
Q Consensus 40 ~~~v~~~-~~s~--~~~~l~t~~~d~~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w 112 (409)
...|.++ ...+ +..++++++.+|.++--.+..-... .......... .+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D-~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDND-ELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTC-CEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCC-EEEEEEEecCCCEEEEEECCCeEEEE
Confidence 3455555 3442 5789999999999998886542111 1112222322 34444444455678888889998888
Q ss_pred EcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCee-------ee--EEcCC
Q 015301 113 DVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKC-------SL--RIPAH 183 (409)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------~~--~~~~~ 183 (409)
.....+.............+.+. ....|.++...+++.+++..+..|.++.-.+..-.. +. .+..-
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~-----~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFN-----IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCC-----TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCC-----CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 87631211111111111111111 122477776666677889999999998887643221 11 12221
Q ss_pred CCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 184 KSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
.+.+..+... .+...++..+.+|.+.-++..
T Consensus 248 ~d~lv~~~~~-~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 248 RGRLVGALIV-DDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCSEEEEEEE-CTTCEEEEEEGGGCEEEEEGG
T ss_pred CCeEEEEEEe-CCCccEEEEcCCCeEEEEehh
Confidence 3456555554 344556666777877777643
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.86 E-value=19 Score=34.77 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=46.6
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcCC-----CCCeEEEEEeCCCCcEEEEe---eCCCeEEEeccc
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPAH-----KSDVNTVCFADETGHLIFSG---SDDSLCKVWDRR 215 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~---~~dg~i~iwd~~ 215 (409)
.+.+++..++..++++-+.|+++++|++.+++++.+..-. ..........|..+.++.+- ..+|..++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 5677888888889999999999999999999988765211 11111222333344444332 245677777654
No 356
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.80 E-value=13 Score=30.39 Aligned_cols=154 Identities=6% Similarity=0.020 Sum_probs=86.4
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECC--
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQ-- 172 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-- 172 (409)
|+..++++.+.+|.|+--.+..-+..... ...+ .....+..+........|+..+..|.++-+...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~-------~~~l-----ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~el 70 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ-------DFAM-----KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHEL 70 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC-------CCCC-----CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc-------cccc-----CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHC
Confidence 56778889999999987765422111000 0000 011134444455556677777888887666542
Q ss_pred -------CCeeeeE---EcCCCCCeEEEEEeCC--CCcEEEEeeCCCeEEEecccccccC----CceeeeeeccccceeE
Q 015301 173 -------ANKCSLR---IPAHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFISK----GRANGVLMGHLEGITF 236 (409)
Q Consensus 173 -------~~~~~~~---~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~v~~ 236 (409)
.|.++.. +. ....|..+...+. ++.+++..+.+|.++-..+..+... +.....+... +.+..
T Consensus 71 p~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~ 148 (323)
T 1wp5_A 71 PDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVD 148 (323)
T ss_dssp CBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEE
T ss_pred cCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEE
Confidence 2232211 22 2345666544322 2567888899999999887543321 2222223322 45555
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 237 IDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 237 ~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
+........++..+.+|.+..++...
T Consensus 149 ~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 149 VHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp EEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 54444556678888899888887765
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.53 E-value=22 Score=30.96 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=54.0
Q ss_pred cceeeEEecCce--eEeeccceEEEEeeecCCC--ce-------e-ec----CCCCeEEEEECCC----CCEEEEEeC--
Q 015301 3 VGREVNYSGRGR--FSAADSCHVLSRYLPVNGP--WK-------V-DG----MNSRVYTSQFSND----GSFFVAASQ-- 60 (409)
Q Consensus 3 ~~~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~--~~-------l-~~----h~~~v~~~~~s~~----~~~l~t~~~-- 60 (409)
.++.++|.|||. ++++.....+..+.+.... .. + .+ ..+....|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999984 6555444444443322110 01 1 11 2456889999996 444444332
Q ss_pred C----------CcEEEEEcCCC----------eeeeeee-ecccccceEEEEEeCCCCcEEEEEec
Q 015301 61 E----------SNIKVYNVDKN----------WKIQKDI-ETKALRWTITDTSLSPDQRFLVYASI 105 (409)
Q Consensus 61 d----------~~i~vw~~~~~----------~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~ 105 (409)
+ ..|.-|.+..+ +.+.... ....| ....|+|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 13444665421 1222211 12234 4678999999987776654
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.73 E-value=21 Score=30.14 Aligned_cols=105 Identities=6% Similarity=-0.046 Sum_probs=53.9
Q ss_pred eeEEEEEcC-C-CCeEEEEEecCeEEEEECCCCe--eeeEEc----------------CCCCCeEEEEEeCCCCcEEEEe
Q 015301 144 GIFSVKFST-D-GQELVAAGSDNFIYVYDLQANK--CSLRIP----------------AHKSDVNTVCFADETGHLIFSG 203 (409)
Q Consensus 144 ~v~~~~~~~-~-~~~l~~~~~d~~i~v~d~~~~~--~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~ 203 (409)
.|.++++.| + ...+.+++..+.|...+-.... .+.... .....+.+|.+.|.+.+.|+.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 588899987 2 4567777666766655432211 111110 0123578899985455555555
Q ss_pred eCCCeEEEecccccccCCceeeeeec-----c--------ccceeEEEEcCC-CCeEEEEeCCC
Q 015301 204 SDDSLCKVWDRRCFISKGRANGVLMG-----H--------LEGITFIDSRRD-GRYFISNGKDQ 253 (409)
Q Consensus 204 ~~dg~i~iwd~~~~~~~~~~~~~~~~-----~--------~~~v~~~~~~~~-~~~l~~~~~dg 253 (409)
..++.|...+- .+..-..+.. + ...+..+.+.|+ ...|+.+...+
T Consensus 196 ~~~ggl~~s~D-----gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 196 MSSGGVFESTD-----AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EETBEEEEESS-----TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ECCCCEEEECC-----CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 54454444331 1111111110 0 124788888885 35666665544
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=80.33 E-value=7.1 Score=35.10 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=40.8
Q ss_pred EeeeecCCCCEEEEEeCC------------CeEEEEEccCCceEEEeccC-CcceeeeEEecCcCeEEee
Q 015301 317 FSPEYSTAQKYIYTGSSD------------NSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~d------------g~v~i~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~ 373 (409)
-.++|+|.|+++++-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 355789999876664432 34666777778776666655 4589999999999977665
No 360
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=80.15 E-value=39 Score=31.61 Aligned_cols=282 Identities=11% Similarity=0.041 Sum_probs=144.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeeeeeecc--cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCc
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQKDIETK--ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSA 118 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~ 118 (409)
..|.++....+|.+.+ |+.+| +..++..++.......... .....|.++...+++..|-+|+. +-+..++..+++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 5688998888887655 44444 7788877653221111110 01224888888777765555654 457788877654
Q ss_pred cccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEc-------CCCCCeEEEE
Q 015301 119 RESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIP-------AHKSDVNTVC 191 (409)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~v~~~~ 191 (409)
....... . ...|.++....+|.+ ..|+. +-+.+++..+++...... .....|.++.
T Consensus 223 ~~~~~~l---~------------~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 285 (758)
T 3ott_A 223 IKQTEAF---H------------NNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIF 285 (758)
T ss_dssp EEEEEEE---E------------EEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEE
T ss_pred EEeccCC---C------------CCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEE
Confidence 3221110 0 124888888877764 44554 458889887665432111 1234588887
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCCceeeee----eccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccc
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKGRANGVL----MGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNT 267 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 267 (409)
.. .++++ -.|+..| +.++... ......... ......|.++.-..+|.+.+ |+.+| +..++..+.....
T Consensus 286 ~D-~~g~l-WiGT~~G-l~~~~~~---~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~ 357 (758)
T 3ott_A 286 AD-QEHNI-WLGTDYG-ISLSRYN---SALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHD 357 (758)
T ss_dssp EC-TTCCE-EEEESSS-EEEECCC---C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCC
T ss_pred Ec-CCCCE-EEEeCCc-ccccccC---CceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccce
Confidence 76 55554 4455556 5444321 011110000 01124578888777777544 45555 6666654311100
Q ss_pred cccccccccccccccccccccceeccccCccceeeeeccc-ceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCCc
Q 015301 268 TDNSRLRDYDWDYRWMEYPSYARRLKHPHDQSLATYKGHS-VLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGA 346 (409)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 346 (409)
...+.... ........+.++..+.+|++- .|+ ++-+..||..+++
T Consensus 358 --------------------------------~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~ 403 (758)
T 3ott_A 358 --------------------------------AIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQ 403 (758)
T ss_dssp --------------------------------CEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTE
T ss_pred --------------------------------eEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCc
Confidence 00000000 000000112333344556544 455 4568999987765
Q ss_pred eEEEe--cc----CCcceeeeEEecCcCeEEeecCCCeEEEEecC
Q 015301 347 QVAKL--DF----HNAPVRDCCWHPIYPMLISSSWDCNIVRWEIP 385 (409)
Q Consensus 347 ~~~~~--~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 385 (409)
..... .. ....|.++.-.+++.+.+ |+..+-|.+++..
T Consensus 404 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~ 447 (758)
T 3ott_A 404 FIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKH 447 (758)
T ss_dssp EEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHH
T ss_pred EEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccc
Confidence 43221 11 123577887777776444 4445557777743
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.34 E-value=24 Score=28.11 Aligned_cols=206 Identities=7% Similarity=0.015 Sum_probs=114.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEE---EEcCCCeeeeeeeecccccceEEEEEeCC-CCcEEEEEecCCEEEEEEcC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKV---YNVDKNWKIQKDIETKALRWTITDTSLSP-DQRFLVYASICAIVNIVDVG 115 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~v---w~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~~w~~~ 115 (409)
.+.+..+.-.....+|+.-+.+|.++- |++....... + ... ...|..+.... +..+++..+.+|.++-..+.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--l-l~~-~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--L-KSR-EEKIVGAFIREKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--C-SST-TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--c-CCC-CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH
Confidence 345655555444555666667776654 4443321111 2 222 33566654421 46789999999999998876
Q ss_pred CCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC---------CeeeeEEcCCCCC
Q 015301 116 SSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA---------NKCSLRIPAHKSD 186 (409)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~ 186 (409)
.-. ... .....+.+.. ...+..+....+...++..+..|.+..+.... |.....+. ....
T Consensus 99 ~~~-~~~----~G~~~i~lke-----gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~ 167 (276)
T 3no0_A 99 EFE-YKA----QGMPIIKLTE-----GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDE 167 (276)
T ss_dssp GTT-TCS----TTEECSCCCT-----TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCC
T ss_pred Hhh-hhc----CCeEEEecCC-----CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCE
Confidence 543 111 0111111111 12355555555666788888999988887532 11212233 2356
Q ss_pred eEEEEEeCCCCcEEEEeeCCCeEEEecccccccCC---ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEE--eeCC
Q 015301 187 VNTVCFADETGHLIFSGSDDSLCKVWDRRCFISKG---RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKL--WDIR 261 (409)
Q Consensus 187 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~~ 261 (409)
|..+... +++..++..+..|.++...+....... +-...+ ...+.+..+....+...++..+.+|.+.. ++..
T Consensus 168 vv~~~~~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 168 TSGLRIW-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEEE-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEEe-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 7776665 456688888999999988765332211 112222 23344544443333446777778888877 7765
Q ss_pred C
Q 015301 262 K 262 (409)
Q Consensus 262 ~ 262 (409)
.
T Consensus 246 ~ 246 (276)
T 3no0_A 246 D 246 (276)
T ss_dssp G
T ss_pred H
Confidence 4
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=77.82 E-value=27 Score=28.42 Aligned_cols=159 Identities=9% Similarity=0.089 Sum_probs=87.5
Q ss_pred CCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCC-
Q 015301 95 PDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQA- 173 (409)
Q Consensus 95 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~- 173 (409)
++..++++.+.+|.|+--.+..-...... ......+.+. ....+..+........++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~--~~g~~~~~lk-----e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~i 78 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG--GKGLSSFDLN-----DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEI 78 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS--CCCEECCCCC-----TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC--CCCceecccC-----CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHC
Confidence 56678889999999988776543221110 0000001010 111344454555566777788888877765531
Q ss_pred --C------ee---eeEEcCCCCCeEEEEEeCC--CCcEEEEeeCCCeEEEeccccccc---CCceeeeeeccccceeEE
Q 015301 174 --N------KC---SLRIPAHKSDVNTVCFADE--TGHLIFSGSDDSLCKVWDRRCFIS---KGRANGVLMGHLEGITFI 237 (409)
Q Consensus 174 --~------~~---~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~v~~~ 237 (409)
. .+ ...+. ....|..+...+. +...++..+..|.++...+..+.. .+.....+.. .+.+..+
T Consensus 79 p~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~ 156 (312)
T 1suu_A 79 KDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSA 156 (312)
T ss_dssp CC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEE
T ss_pred CCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEE
Confidence 1 11 11122 2345555544321 456788889999999888754322 2223333333 4455555
Q ss_pred EEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 238 DSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 238 ~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
....++..++..+.+|.+..+....
T Consensus 157 ~~~~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 157 EIVFKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 5544556788888999988888765
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=73.64 E-value=15 Score=32.74 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=39.9
Q ss_pred EeeeecCCCCEEEEEeC------------CCeEEEEEccCCceEEEeccC-CcceeeeEEecCcCeEEee
Q 015301 317 FSPEYSTAQKYIYTGSS------------DNSVYIYDLVSGAQVAKLDFH-NAPVRDCCWHPIYPMLISS 373 (409)
Q Consensus 317 ~~~~~s~~~~~l~~~~~------------dg~v~i~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~ 373 (409)
-.+.|+++|.+.++... ...|+.++..+++....+.+. ...++.++|+||++.|+.+
T Consensus 479 DnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45578888887774322 226777777778766655543 3578999999999977665
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.78 E-value=75 Score=30.77 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=29.2
Q ss_pred eeeecCCCCEEEEEeCCCeEEEEEccCCceEEEec
Q 015301 318 SPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLD 352 (409)
Q Consensus 318 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 352 (409)
+....++..++++-+.|+++++|++.+++++.+..
T Consensus 240 ~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 240 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 33455678899999999999999999999887753
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.21 E-value=37 Score=26.98 Aligned_cols=206 Identities=9% Similarity=-0.016 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEE---ECCCCeeeeEEcCCCCCeEEEEEeCC-CCcEEEEeeCCCeEEEecccccc--
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVY---DLQANKCSLRIPAHKSDVNTVCFADE-TGHLIFSGSDDSLCKVWDRRCFI-- 218 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~---d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-- 218 (409)
+..+.-.....+|+.-+..|.++-. ++........+. ....|..+.. +. +...++..+.+|.++-..+....
T Consensus 26 ~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 26 VVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred EEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 4444444455567777778877654 333222111132 3556666643 22 46788999999999998875332
Q ss_pred cCCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCCcccccccccccccccccccccccccceeccccCcc
Q 015301 219 SKGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKMSSNTTDNSRLRDYDWDYRWMEYPSYARRLKHPHDQ 298 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (409)
..+.....+.. .+.+..+........++..+..|.+..++........... .+.
T Consensus 104 ~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a-------------------------~Gv 157 (276)
T 3no0_A 104 AQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGA-------------------------RGV 157 (276)
T ss_dssp STTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTC-------------------------CCE
T ss_pred cCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCC-------------------------CCE
Confidence 11212222322 3455555555556678888899988888765422111000 011
Q ss_pred ceeeeecccceeeeeEEEEeeeecCCCCEEEEEeCCCeEEEEEccCC-------ceEEEeccCCcceeeeEEecCcCeEE
Q 015301 299 SLATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSG-------AQVAKLDFHNAPVRDCCWHPIYPMLI 371 (409)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~v~i~d~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~ 371 (409)
....+.... .+.... ..+++..++..+..|.++...+..- +-+..+ ...+.+..+....+...++
T Consensus 158 ~~i~L~~~d---~vv~~~----~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~ 229 (276)
T 3no0_A 158 QGIKLEKND---ETSGLR----IWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELL 229 (276)
T ss_dssp ECCCCCTTC---CEEEEE----EESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEE
T ss_pred EEEccCCCC---EEEEEE----EeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEE
Confidence 111111111 111111 1123567888899999998887532 223333 2334455544333344566
Q ss_pred eecCCCeEEE--EecCC
Q 015301 372 SSSWDCNIVR--WEIPG 386 (409)
Q Consensus 372 s~~~dg~i~i--w~~~~ 386 (409)
..+.+|.+.. +++..
T Consensus 230 ~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 230 ITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEETTSCEEEEEEEGGG
T ss_pred EEcCCCeEEEeeeCHHH
Confidence 6677888887 87654
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=70.63 E-value=47 Score=27.93 Aligned_cols=174 Identities=13% Similarity=0.227 Sum_probs=97.1
Q ss_pred CCeEEEEECCCCCEEEE--EeC-------------CCcEEEEEcCCC--eeeeeeeec---ccccceEEEEEeC---CC-
Q 015301 41 SRVYTSQFSNDGSFFVA--ASQ-------------ESNIKVYNVDKN--WKIQKDIET---KALRWTITDTSLS---PD- 96 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t--~~~-------------d~~i~vw~~~~~--~~~~~~~~~---~~~~~~v~~~~~s---~~- 96 (409)
-.|..+...+++++-+. |-. --.|.+||+.++ +.+....-. .........+++. |+
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 46888888887765442 211 125889999998 666553321 1123457888877 32
Q ss_pred ---CcEEEEEe-cCCEEEEEEcCCCccccccceecee-eeeeeecCCCC--cceeeEEEEEcCC----CCeEEEEEecCe
Q 015301 97 ---QRFLVYAS-ICAIVNIVDVGSSARESLANVTEIH-KGLDFSADGDE--DEFGIFSVKFSTD----GQELVAAGSDNF 165 (409)
Q Consensus 97 ---~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~v~~~~~~~~----~~~l~~~~~d~~ 165 (409)
+.+...+. ..+.|.++|+.+++..+.....-.. ....+.-.+.. -...+..++++|+ ++.|......+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss- 245 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA- 245 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-
Confidence 34444443 4678999999998765544211100 00111111110 1236999999997 67777665544
Q ss_pred EEEEECC-----CC---eeeeEE--cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccc
Q 015301 166 IYVYDLQ-----AN---KCSLRI--PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRR 215 (409)
Q Consensus 166 i~v~d~~-----~~---~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 215 (409)
-++|.+. .. ..+..+ ++....-..+++.+.++.++++--....|..|+..
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~ 305 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQ 305 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETT
T ss_pred CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCC
Confidence 2333332 11 111212 11113334556644678888888888999999964
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=69.97 E-value=48 Score=27.76 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=89.3
Q ss_pred eCCCCcEEEEEecCCEEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEEC-
Q 015301 93 LSPDQRFLVYASICAIVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDL- 171 (409)
Q Consensus 93 ~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~- 171 (409)
+-|+..++++.+.+|.|+--.+..-...... ......+.+. ....+..+........|+..+..|.++-+..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~--g~g~~~~~lk-----e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~ 75 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRG--GRGRSAASTK-----EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVH 75 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCC--CCCSEEEECS-----CCCCEEEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccC--CCCceecccC-----CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHH
Confidence 3467789999999999987665432211100 0000011111 1113555555556667777778888776653
Q ss_pred --C------CCeeeeE---EcCCCCCeEEEEEeC--CCCcEEEEeeCCCeEEEeccccccc---CCceeeeeecccccee
Q 015301 172 --Q------ANKCSLR---IPAHKSDVNTVCFAD--ETGHLIFSGSDDSLCKVWDRRCFIS---KGRANGVLMGHLEGIT 235 (409)
Q Consensus 172 --~------~~~~~~~---~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~v~ 235 (409)
. .|.++.. +. ....|.++...+ ..+.+|+.++..|.++...+..+.. .+.....+.. .+.+.
T Consensus 76 eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv 153 (370)
T 3l6v_A 76 QLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALV 153 (370)
T ss_dssp GSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEE
T ss_pred HCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEE
Confidence 2 2222221 22 345566655432 2356899999999999988754332 2222223332 34454
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.+........++..+.+|.+..++...
T Consensus 154 ~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 154 GVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 454444555777788888888887654
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=69.93 E-value=44 Score=27.33 Aligned_cols=204 Identities=8% Similarity=0.010 Sum_probs=104.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeee-eeeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc-cceec
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKI-QKDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL-ANVTE 127 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~-~~~~~ 127 (409)
|+..++++.+.+|.|+--.+..-... .........+ .+..+........|+..+..|.+.-+....-..... ..-..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D-~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTD-RLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTC-CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCC-EEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56778889999999987654311000 0011122222 344444444455666677788766655432110000 00000
Q ss_pred eeeeeeeecCCCCcceeeEEE-EEcC--CCCeEEEEEecCeEEEEECCC--------CeeeeEEcCCCCCeEEEEEeCCC
Q 015301 128 IHKGLDFSADGDEDEFGIFSV-KFST--DGQELVAAGSDNFIYVYDLQA--------NKCSLRIPAHKSDVNTVCFADET 196 (409)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~-~~~~--~~~~l~~~~~d~~i~v~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~ 196 (409)
....+.+. ....|.++ ...+ ++.+++.++.+|.++-..+.. +.....+.. .+.+..+... ..
T Consensus 82 i~~~i~L~-----~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~-~~ 154 (323)
T 1wp5_A 82 IANIIPID-----RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLT-DG 154 (323)
T ss_dssp GGGTSCCC-----TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEE-CS
T ss_pred hhhccCCC-----CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEe-CC
Confidence 00011111 11134444 3332 256788999999999987742 222222332 3566666665 45
Q ss_pred CcEEEEeeCCCeEEEecccccccCC-----ceeeeeeccccceeEEEEcCCCC-eEEEEeCCCcEEEeeCCC
Q 015301 197 GHLIFSGSDDSLCKVWDRRCFISKG-----RANGVLMGHLEGITFIDSRRDGR-YFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 197 ~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 262 (409)
.+.++..+.+|.+..+........+ .....+. ..+.|.++...+++. .+++.+..|..+..++..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 5667778889998888764221111 1122222 234455554434444 677888888877777655
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=69.43 E-value=44 Score=27.09 Aligned_cols=209 Identities=10% Similarity=0.024 Sum_probs=108.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEc---CCC------eeeeeeeecccccceEEEEEe-C--CCCcEEEEEecCCEE
Q 015301 42 RVYTSQFSNDGSFFVAASQESNIKVYNV---DKN------WKIQKDIETKALRWTITDTSL-S--PDQRFLVYASICAIV 109 (409)
Q Consensus 42 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~---~~~------~~~~~~~~~~~~~~~v~~~~~-s--~~~~~l~~~~~dg~i 109 (409)
.+..+........|+..+..|.++-... ... ..+...+.... ...|.++.. . .++.+++.++.+|.+
T Consensus 43 ~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 121 (307)
T 1zi0_A 43 FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQ-DERITAILPVTEFEEGVKVFMATANGTV 121 (307)
T ss_dssp CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeE
Confidence 3334333334455666667777655543 221 11111122222 224555533 2 356678899999999
Q ss_pred EEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC---------eeeeEE
Q 015301 110 NIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN---------KCSLRI 180 (409)
Q Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---------~~~~~~ 180 (409)
+--.+..-...... ....+.+. .. ..+..+....+...++..+.+|.+..+....- .....+
T Consensus 122 Krt~l~e~~~~~r~----G~~~i~l~----~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L 192 (307)
T 1zi0_A 122 KKTVLTEFNRLRTA----GKVAIKLV----DG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 192 (307)
T ss_dssp EEEEGGGGTTCCTT----CEESSCCC----TT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC
T ss_pred EEEEHHHhhccccC----CeEEEEEC----CC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe
Confidence 98877533221110 00001111 11 23445544445556778888898888876421 111122
Q ss_pred cCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEecccccccC-----CceeeeeeccccceeEEEEcCCCCeEEEEeCCCcE
Q 015301 181 PAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCFISK-----GRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTT 255 (409)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 255 (409)
. ....|.++... .++..+++.+..|.++-.++...... +.....+....+.+..+....+...++..+.+|.+
T Consensus 193 ~-~~d~Vv~~~~~-~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 193 G-EGDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp C-TTCCEEEEECC-CSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred C-CCCEEEEEEEe-cCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 2 34567777655 44567888899999998887532211 11122232233455554443344556667777877
Q ss_pred EEeeCCC
Q 015301 256 KLWDIRK 262 (409)
Q Consensus 256 ~iwd~~~ 262 (409)
.-++...
T Consensus 271 ir~~~~~ 277 (307)
T 1zi0_A 271 VRTRVSE 277 (307)
T ss_dssp EEEEGGG
T ss_pred EEEeccc
Confidence 7666654
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=68.88 E-value=45 Score=27.07 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=110.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeee------eeeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKIQ------KDIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
|+..++++.+.+|.|+--.+..-.... ........+ .+..+........++..+..|.++-+....-......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D-~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGD-EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTC-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCC-EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 566788899999999987664321111 111122222 3444444444556777788888777665421100000
Q ss_pred c-eeceeeeeeeecCCCCcceeeEEEEEcC---CCCeEEEEEecCeEEEEECCC-------CeeeeEEcCCCCCeEEEEE
Q 015301 124 N-VTEIHKGLDFSADGDEDEFGIFSVKFST---DGQELVAAGSDNFIYVYDLQA-------NKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 124 ~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~ 192 (409)
. -......+.+.+ ...|.++...+ +..+++..+..|.++...+.. |.....+.. .+.+..+..
T Consensus 85 ~~G~~i~~~l~l~~-----~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~ 158 (312)
T 1suu_A 85 SKGQNISELINLGD-----QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEI 158 (312)
T ss_dssp ---CBGGGTSCCCT-----TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEE
T ss_pred CCCcChhhccCCCC-----CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEE
Confidence 0 000000111111 11344443332 456788889999999887743 222223333 566777766
Q ss_pred eCCCCcEEEEeeCCCeEEEeccccccc-----CCceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFIS-----KGRANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
. ..+..++..+.+|.+..+....... .+.....+.. .+.|.++..-.++..+++.+..|..+..++...
T Consensus 159 ~-~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 159 V-FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp E-CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred e-CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 6 4456777888999998887653211 1222222332 345666655555667888888999888887653
No 371
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=68.33 E-value=53 Score=27.62 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=48.4
Q ss_pred eEEEEECCCC--eeeeEEcC------CCCCeEEEEEe-C-CC----CcEEEEee-CCCeEEEecccccccCCceeeee--
Q 015301 165 FIYVYDLQAN--KCSLRIPA------HKSDVNTVCFA-D-ET----GHLIFSGS-DDSLCKVWDRRCFISKGRANGVL-- 227 (409)
Q Consensus 165 ~i~v~d~~~~--~~~~~~~~------~~~~v~~~~~~-~-~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-- 227 (409)
.|.+||+.++ +.++++.- ..+.+..+.+. - ++ +.+++... ..+-|.++|+. .++.-+.+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~----~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK----KQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT----TTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC----CCcEEEEccC
Confidence 5778888888 77776532 23456777776 1 11 33444433 46778999975 22221111
Q ss_pred ------------ecc----ccceeEEEEcCC----CCeEEEEeCCC
Q 015301 228 ------------MGH----LEGITFIDSRRD----GRYFISNGKDQ 253 (409)
Q Consensus 228 ------------~~~----~~~v~~~~~~~~----~~~l~~~~~dg 253 (409)
.+. ...+..|+++|+ ++.|......+
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 111 246778888887 66666555443
No 372
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=68.11 E-value=47 Score=29.76 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=39.9
Q ss_pred CCeEEEEECCCCCEEEEEeC------------CCcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEEe
Q 015301 41 SRVYTSQFSNDGSFFVAASQ------------ESNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYAS 104 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~------------d~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 104 (409)
.....|.|+++|.+.+.... ...+..++..++ .+..+... .....++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG-el~~fl~~-P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC-CEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC-eEEEEEeC-CCCccccCCEECCCCCEEEEEE
Confidence 45678999999987773321 124556665555 34443322 1123689999999999888764
No 373
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.50 E-value=23 Score=31.93 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=38.2
Q ss_pred eEEEEECCCCCEEEEEeCC------------CcEEEEEcCCCeeeeeeeecccccceEEEEEeCCCCcEEEEE
Q 015301 43 VYTSQFSNDGSFFVAASQE------------SNIKVYNVDKNWKIQKDIETKALRWTITDTSLSPDQRFLVYA 103 (409)
Q Consensus 43 v~~~~~s~~~~~l~t~~~d------------~~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 103 (409)
.--|+|+|+|.+++.-..+ ..+.+.+..++ .+..+.... ....++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 4668999999966654322 23445555555 344443332 34589999999999988765
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.02 E-value=21 Score=35.37 Aligned_cols=37 Identities=32% Similarity=0.371 Sum_probs=31.4
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEE
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRI 180 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 180 (409)
.+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556667778889999999999999999999988765
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.11 E-value=7 Score=38.69 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=30.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
..|.+++..++..+++|-+.|+++|||++.++..+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 3556667778889999999999999999999866554
No 376
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=60.30 E-value=18 Score=33.27 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeee
Q 015301 41 SRVYTSQFSNDGSFFVAASQESNIKVYNVDKNWKIQK 77 (409)
Q Consensus 41 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~ 77 (409)
..|.|+.+. ..+++|-+.|.++|+|++.++..+..
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t 256 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQD 256 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEe
Confidence 346666654 67999999999999999999865544
No 377
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=60.04 E-value=79 Score=29.03 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=45.0
Q ss_pred CCeEEEEE----CCCCC---EEEEEeCCCcEE-EEEcCCCeeeeeeeecccccceEEEEEeCCCC--cEEEEEecCCEEE
Q 015301 41 SRVYTSQF----SNDGS---FFVAASQESNIK-VYNVDKNWKIQKDIETKALRWTITDTSLSPDQ--RFLVYASICAIVN 110 (409)
Q Consensus 41 ~~v~~~~~----s~~~~---~l~t~~~d~~i~-vw~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~ 110 (409)
...+.|+. ..+++ .+..|..+|.|. +-.......+...........+|..|.++++. .+|.+++..+.++
T Consensus 397 ~~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~ 476 (663)
T 1olz_A 397 VNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQ 476 (663)
T ss_dssp CCEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEE
T ss_pred CceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEE
Confidence 34677775 34543 677888899874 43444443333333333334578899999987 8999888776555
Q ss_pred E
Q 015301 111 I 111 (409)
Q Consensus 111 ~ 111 (409)
+
T Consensus 477 v 477 (663)
T 1olz_A 477 A 477 (663)
T ss_dssp E
T ss_pred E
Confidence 4
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.49 E-value=81 Score=26.40 Aligned_cols=212 Identities=9% Similarity=0.033 Sum_probs=109.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEc---CC------CeeeeeeeecccccceEEEEE-eC--CCCcEEEEEecCC
Q 015301 40 NSRVYTSQFSNDGSFFVAASQESNIKVYNV---DK------NWKIQKDIETKALRWTITDTS-LS--PDQRFLVYASICA 107 (409)
Q Consensus 40 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~---~~------~~~~~~~~~~~~~~~~v~~~~-~s--~~~~~l~~~~~dg 107 (409)
.+.+..+........|+..+..|.++-+.. .. |..+...+.+... ..|.++. .. .++.+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~-e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESG-ERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTT-CCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCC-CEEEEEEEeccCCCCcEEEEEeCCC
Confidence 445555555555566666677777665543 21 2222222222222 2455543 33 2456899999999
Q ss_pred EEEEEEcCCCccccccceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCCe---------eee
Q 015301 108 IVNIVDVGSSARESLANVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQANK---------CSL 178 (409)
Q Consensus 108 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~ 178 (409)
.++...+..-..... .....+.+.. ...+..+........++..+.+|.+..+....-. ...
T Consensus 124 ~vKrt~l~e~~~~~~----~G~~ai~L~~-----~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i 194 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLA----RGKIAINLDE-----GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGI 194 (370)
T ss_dssp EEEEEEGGGGCSCCT----TCEESSCCCT-----TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECC
T ss_pred eEEEeEHHHhhcccC----CceEEEEeCC-----CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeE
Confidence 999888754332110 0111111111 1234444444555578888888988888764311 111
Q ss_pred EEcCCCCCeEEEEEeCC----------------------------------CCcEEEEeeCCCeEEEecccccccCCc--
Q 015301 179 RIPAHKSDVNTVCFADE----------------------------------TGHLIFSGSDDSLCKVWDRRCFISKGR-- 222 (409)
Q Consensus 179 ~~~~~~~~v~~~~~~~~----------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 222 (409)
.+. ....|.++...+. ++..+++.+..|..+...+..+...+.
T Consensus 195 ~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~ 273 (370)
T 3l6v_A 195 RLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGT 273 (370)
T ss_dssp CCC-TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTS
T ss_pred EeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCC
Confidence 122 2355666655521 445788999999998887653322221
Q ss_pred ---eeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 223 ---ANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 223 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
....+....+.+..+.+..+...++..+..|.+.-..+..
T Consensus 274 kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 274 QGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred cceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 1122222234455444333445566666777666665544
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.30 E-value=73 Score=29.47 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=29.6
Q ss_pred eeEEEEEcCCCCeEEEEEecCeEEEEECCCCeeeeEEcC
Q 015301 144 GIFSVKFSTDGQELVAAGSDNFIYVYDLQANKCSLRIPA 182 (409)
Q Consensus 144 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 182 (409)
.|.++.+ +..++++-+.|..+++|++++++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 467999999999999999999998877643
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=57.78 E-value=84 Score=26.39 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCeEEEEEecCeEEEEECCCC-----------eeeeEEcC-CCCCeEEEEEeCCCCcEEEEeeCCCeEEEe
Q 015301 145 IFSVKFSTDGQELVAAGSDNFIYVYDLQAN-----------KCSLRIPA-HKSDVNTVCFADETGHLIFSGSDDSLCKVW 212 (409)
Q Consensus 145 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 212 (409)
+..++++......+.-..+|.|+.|-.... .....+.. ....|..++.. ....++...+|.|..|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 455666666666777778999999954321 01111221 22356677654 3445556679999999
Q ss_pred cccccccCC-----c--eeeeee-ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 213 DRRCFISKG-----R--ANGVLM-GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 213 d~~~~~~~~-----~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
-.....+-+ . ....+. .....|..++........+....||.|..|-...
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 643111100 0 001111 1123466666544335666677899999997654
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=57.58 E-value=1.3e+02 Score=28.42 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=36.7
Q ss_pred CCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeeccc----ccceEEEEEeCCCC-cEEEEEe
Q 015301 40 NSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSPDQ-RFLVYAS 104 (409)
Q Consensus 40 ~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~-~~l~~~~ 104 (409)
.+.|.+|+++|.. ..+..+...+.|...+ +.+........... ....|.++++.|.. ..+.++.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 4689999999963 4556666666555443 34434333222111 12369999999853 4444443
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=56.94 E-value=77 Score=25.64 Aligned_cols=204 Identities=11% Similarity=0.047 Sum_probs=103.3
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeee------eeecccccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCccccc-
Q 015301 50 NDGSFFVAASQESNIKVYNVDKNWKIQK------DIETKALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESL- 122 (409)
Q Consensus 50 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~- 122 (409)
|+..++++.+.+|.|+--.+..-..... .......+ .+..+........|+..+..|.++-+....-.....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D-~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED-FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------C-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCC-EEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 4566788899999998776643211110 01112222 333333333445566667778766555432110000
Q ss_pred cceeceeeeeeeecCCCCcceeeEEEEEc---CCCCeEEEEEecCeEEEEECCC-------CeeeeEEcCCCCCeEEEEE
Q 015301 123 ANVTEIHKGLDFSADGDEDEFGIFSVKFS---TDGQELVAAGSDNFIYVYDLQA-------NKCSLRIPAHKSDVNTVCF 192 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~ 192 (409)
..-......+.+. ....|.++... +++.+++..+.+|.++-..+.. +.....+..+ +.+..+..
T Consensus 80 a~G~~i~~~l~l~-----~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-----QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-----TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEE
T ss_pred CCCeEhhhccCCC-----CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEE
Confidence 0000000000111 11135554332 3456788899999999887642 2122223333 56666666
Q ss_pred eCCCCcEEEEeeCCCeEEEecccccccCC-----ceeeeeeccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 193 ADETGHLIFSGSDDSLCKVWDRRCFISKG-----RANGVLMGHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 193 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
. .+...++..+.+|.+..++.......+ .....+. ..+.|.++...+++..+++.+..|.++-.++..
T Consensus 154 ~-~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 154 T-SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp E-CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred e-CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 5 445567777888988887754221111 1111222 234566665555556788888888888877654
No 383
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=49.88 E-value=1.7e+02 Score=27.39 Aligned_cols=62 Identities=5% Similarity=-0.014 Sum_probs=34.6
Q ss_pred CCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeeccc----ccceEEEEEeCCC-CcEEEEE
Q 015301 41 SRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETKA----LRWTITDTSLSPD-QRFLVYA 103 (409)
Q Consensus 41 ~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~-~~~l~~~ 103 (409)
+.|..|+++|.. ..+.++...+.|..++ +.+.....+..... ....|.+|+++|. ...++++
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~ 90 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIV 90 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEE
Confidence 389999999974 4455565555555544 23333333222111 1236999999983 3444444
No 384
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=47.98 E-value=67 Score=28.21 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=38.2
Q ss_pred CEEEEEeCCCeEEEEEcc-CC-------ceEEEecc--CCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 326 KYIYTGSSDNSVYIYDLV-SG-------AQVAKLDF--HNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~~-~~-------~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
..++.|+.+|.|.=.-+. .+ ..+.+++. ...+|..|.++++..+|+.++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 467889999987544332 21 12334432 3578999999999999999988876665
No 385
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=41.60 E-value=1.6e+02 Score=24.73 Aligned_cols=202 Identities=8% Similarity=0.066 Sum_probs=96.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCe--------eeeeeeecc-cccceEEEEEeCCCCcEEEEEecCCEEEEEEcCCCcccccc
Q 015301 53 SFFVAASQESNIKVYNVDKNW--------KIQKDIETK-ALRWTITDTSLSPDQRFLVYASICAIVNIVDVGSSARESLA 123 (409)
Q Consensus 53 ~~l~t~~~d~~i~vw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 123 (409)
...+.-..||.|+.|-..... ......... .....+..++.+......+.-..+|.|..|-.......-..
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 444455578888888643211 111111111 11123555666666666666778999999965432211100
Q ss_pred ceeceeeeeeeecCCCCcceeeEEEEEcCCCCeEEEEEecCeEEEEECCCC-e----------eeeEEc-CCCCCeEEEE
Q 015301 124 NVTEIHKGLDFSADGDEDEFGIFSVKFSTDGQELVAAGSDNFIYVYDLQAN-K----------CSLRIP-AHKSDVNTVC 191 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~----------~~~~~~-~~~~~v~~~~ 191 (409)
............. .....|..++. .....++-..+|.|+.|-.... + ....+. .....|..++
T Consensus 143 ~~~~~~~p~~v~~---l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia 217 (389)
T 3kci_A 143 NRSPCDRPRVIES---LRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA 217 (389)
T ss_dssp SCCCEEEEEECGG---GTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCccCcCCeEecc---cCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE
Confidence 0000000000000 00113555554 3344555667889999964321 0 011111 1234567776
Q ss_pred EeCCCCcEEEEeeCCCeEEEecccccccCC-------ceeeeeec-cccceeEEEEcCCCCeEEEEeCCCcEEEeeCCC
Q 015301 192 FADETGHLIFSGSDDSLCKVWDRRCFISKG-------RANGVLMG-HLEGITFIDSRRDGRYFISNGKDQTTKLWDIRK 262 (409)
Q Consensus 192 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 262 (409)
.. ......++...||.|..|-......-+ .....+.. ....|..++.. ....+....||.|..|-...
T Consensus 218 ~G-~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 218 CG-SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp EC-CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCG
T ss_pred Ec-CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCC
Confidence 64 333556666789999999643111100 00111111 11235555554 33445557889999997654
No 386
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=40.40 E-value=62 Score=28.81 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=42.6
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCe---eeeeeeecccccceEE-EEEeCCCCcEEEEEecCCEEEE
Q 015301 41 SRVYTSQFSNDG--SFFVAASQESNIKVYNVDKNW---KIQKDIETKALRWTIT-DTSLSPDQRFLVYASICAIVNI 111 (409)
Q Consensus 41 ~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~~ 111 (409)
...++|+....+ ..+..|..+|.|.=..+.... .+...........+|. .|.+++++.+|.+++..+.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 346666665433 356778888887544443221 1222222222234775 8999999999999887665444
No 387
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=38.82 E-value=83 Score=28.03 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=39.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCC----ceEEEecc--CCccee-eeEEecCcCeEEeecCCCeEEE
Q 015301 324 AQKYIYTGSSDNSVYIYDLVSG----AQVAKLDF--HNAPVR-DCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~~----~~~~~~~~--~~~~v~-~~~~s~~~~~l~s~~~dg~i~i 381 (409)
+-..++.|+.+|.|.-..+... ..+.++.. ...+|. .|.++++..+|+.++.++.++|
T Consensus 412 ~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 412 GYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp TEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred CeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4467888999998765555432 12333322 246885 9999999999999987766665
No 388
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=38.53 E-value=1.3e+02 Score=27.04 Aligned_cols=56 Identities=11% Similarity=-0.029 Sum_probs=37.7
Q ss_pred CEEEEEeCCCeEEEEEc-cCC----c-eEEEec--cCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 326 KYIYTGSSDNSVYIYDL-VSG----A-QVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~d~-~~~----~-~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
..++.|+.+|.|.-.-+ ..+ . .+.++. ....+|..|.++++...|+.++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 47788999998764333 222 1 123333 24568999999999888988887766665
No 389
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=33.59 E-value=1.2e+02 Score=26.69 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=41.6
Q ss_pred CeEEEEECC----CCC--EEEEEeCCCcEEEEEcC-CC------eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 42 RVYTSQFSN----DGS--FFVAASQESNIKVYNVD-KN------WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 42 ~v~~~~~s~----~~~--~l~t~~~d~~i~vw~~~-~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
..++|+... ++. .+..|..+|.|.=.-+. .+ ..+...........+|..|.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 467766542 243 46678888876433332 21 112222222223458899999999999999998776
Q ss_pred EEE
Q 015301 109 VNI 111 (409)
Q Consensus 109 i~~ 111 (409)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 390
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=30.81 E-value=2.2e+02 Score=26.25 Aligned_cols=56 Identities=7% Similarity=0.060 Sum_probs=38.1
Q ss_pred CEEEEEeCCCeEEEE-EccCCc-eEEEec--cCCcceeeeEEecCc--CeEEeecCCCeEEE
Q 015301 326 KYIYTGSSDNSVYIY-DLVSGA-QVAKLD--FHNAPVRDCCWHPIY--PMLISSSWDCNIVR 381 (409)
Q Consensus 326 ~~l~~~~~dg~v~i~-d~~~~~-~~~~~~--~~~~~v~~~~~s~~~--~~l~s~~~dg~i~i 381 (409)
..++.|+.+|.|.=. ...... .+..+. ....+|..|.++++. .+|+.++.++.+++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 478889999987433 333322 222222 235689999999988 88998888877766
No 391
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=29.53 E-value=3.6e+02 Score=25.39 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=37.2
Q ss_pred eeeEEEEEcCC-CCeEEEEEecCeEEEEECCCCeeeeEEcC-------CCCCeEEEEEeCCCCcEEEEee
Q 015301 143 FGIFSVKFSTD-GQELVAAGSDNFIYVYDLQANKCSLRIPA-------HKSDVNTVCFADETGHLIFSGS 204 (409)
Q Consensus 143 ~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~ 204 (409)
..|.+++++|. ...+++++..+.|...+-. ++.=..+.. ....+.++++.|.+.+.++++.
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 36999999995 4566777766777665532 321111221 1246999999965556666554
No 392
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=28.10 E-value=1.3e+02 Score=19.73 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=12.6
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeeCC
Q 015301 236 FIDSRRDGRYFISNGKDQTTKLWDIR 261 (409)
Q Consensus 236 ~~~~~~~~~~l~~~~~dg~i~iwd~~ 261 (409)
.+.+..+|.+++... ++.+ +|...
T Consensus 60 ~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 60 FMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp EEEECTTSCEEEECT-TSCE-EEECS
T ss_pred EEEEeCCCcEEEECC-CCCE-EEECC
Confidence 456666776555432 3333 56543
No 393
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=27.83 E-value=1.9e+02 Score=26.55 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=37.7
Q ss_pred CEEEEEeCCCeEE-EEEccCCc-------eEEEec--cCCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 326 KYIYTGSSDNSVY-IYDLVSGA-------QVAKLD--FHNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 326 ~~l~~~~~dg~v~-i~d~~~~~-------~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
..++.|+.+|.|. +....... .+.+++ ....+|..|.++++...|+.++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4678899999875 33222211 223332 24668999999999999999988877665
No 394
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=25.67 E-value=1.8e+02 Score=26.70 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=41.8
Q ss_pred CeEEEEE----CCCCC--EEEEEeCCCcEE-EEEcCCCe------eeeeeeecccccceEEEEEeCCCCcEEEEEecCCE
Q 015301 42 RVYTSQF----SNDGS--FFVAASQESNIK-VYNVDKNW------KIQKDIETKALRWTITDTSLSPDQRFLVYASICAI 108 (409)
Q Consensus 42 ~v~~~~~----s~~~~--~l~t~~~d~~i~-vw~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 108 (409)
..+.|+. .++|+ .+..|..+|.|. +....... .+...........+|..|.++++...|.+++.++.
T Consensus 413 ~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V 492 (667)
T 4gz8_A 413 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 492 (667)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEE
Confidence 3455554 34453 466788888764 43322221 12222223334557899999999999999998776
Q ss_pred EEE
Q 015301 109 VNI 111 (409)
Q Consensus 109 i~~ 111 (409)
++|
T Consensus 493 ~kV 495 (667)
T 4gz8_A 493 AQL 495 (667)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 395
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=24.79 E-value=3.1e+02 Score=24.63 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=37.3
Q ss_pred CEEEEEeCCCeEE-EEEccC--C-----ceEEEecc-----------CCcceeeeEEecCcCeEEeecCCCeEEE
Q 015301 326 KYIYTGSSDNSVY-IYDLVS--G-----AQVAKLDF-----------HNAPVRDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 326 ~~l~~~~~dg~v~-i~d~~~--~-----~~~~~~~~-----------~~~~v~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
..++.|+.+|.|. +..... + ..+.+++. ...+|..|.++++...|+.++.++.+++
T Consensus 421 tVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~LYV~s~~~V~qV 495 (565)
T 3oky_B 421 TVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSLYVAFSTCVIKV 495 (565)
T ss_dssp EEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEEEEECSSCEEEE
T ss_pred EEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEEEEEecCeEEEe
Confidence 5678899999875 333221 1 12333321 1467899999999999999988877776
No 396
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=24.28 E-value=2.5e+02 Score=21.84 Aligned_cols=105 Identities=6% Similarity=0.002 Sum_probs=55.4
Q ss_pred eEEEEEecCeEEEEECCCCee-eeEEcCCCCCeEEEEEeCCCCcEEEEeeCCCeEEEeccccc---ccCCceee---eee
Q 015301 156 ELVAAGSDNFIYVYDLQANKC-SLRIPAHKSDVNTVCFADETGHLIFSGSDDSLCKVWDRRCF---ISKGRANG---VLM 228 (409)
Q Consensus 156 ~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~---~~~ 228 (409)
..++.+.+|.|+--....... ...+.. .+.+..+... ...+.|+..+..|.++-+..... ...+..+. .+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~-~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKG-KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEE-ETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEe-CCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 345566677776555432111 112332 3344444444 33445566677888776654321 11222111 121
Q ss_pred ccccceeEEEEcCCCCeEEEEeCCCcEEEeeCCCC
Q 015301 229 GHLEGITFIDSRRDGRYFISNGKDQTTKLWDIRKM 263 (409)
Q Consensus 229 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 263 (409)
..+.|.++....++.+|+.++..|.++...+...
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 2345666644345667888999999999887653
No 397
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=22.94 E-value=4.7e+02 Score=24.48 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=35.9
Q ss_pred CCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeeeeeecc-----c----ccceEEEEEeCCC-CcEEEEE
Q 015301 39 MNSRVYTSQFSNDG-SFFVAASQESNIKVYNVDKNWKIQKDIETK-----A----LRWTITDTSLSPD-QRFLVYA 103 (409)
Q Consensus 39 h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-----~----~~~~v~~~~~s~~-~~~l~~~ 103 (409)
-.+.|.+|+++|.+ ..+.++...|.|...+ +.+.......... . ....+.+++++|. ...+.++
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 45789999999976 4565666556544333 3333333322211 0 1235899999983 3444433
No 398
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=22.70 E-value=4.2e+02 Score=23.78 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCeEEEEEccCCceEEEeccCC-----cceeeeE-Eec--CcC--eEEeecCCCeEEEEecCCCcc
Q 015301 334 DNSVYIYDLVSGAQVAKLDFHN-----APVRDCC-WHP--IYP--MLISSSWDCNIVRWEIPGIGE 389 (409)
Q Consensus 334 dg~v~i~d~~~~~~~~~~~~~~-----~~v~~~~-~s~--~~~--~l~s~~~dg~i~iw~~~~~~~ 389 (409)
...|+|.|+.+++.+..+.... ..+..+. +.. |+. .++.+...|.|.-+|+.....
T Consensus 222 ~~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~ 287 (570)
T 3hx6_A 222 KAALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV 287 (570)
T ss_dssp CEEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred ccEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence 3579999999999988875321 1222332 222 332 789999999999999977543
No 399
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.22 E-value=3e+02 Score=24.88 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=40.9
Q ss_pred CeEEEEE----CCCC---CEEEEEeCCCcEEEEEc-CCC----eeeeeeeecccccceEEEEEeCCCCcEEEEEecCCEE
Q 015301 42 RVYTSQF----SNDG---SFFVAASQESNIKVYNV-DKN----WKIQKDIETKALRWTITDTSLSPDQRFLVYASICAIV 109 (409)
Q Consensus 42 ~v~~~~~----s~~~---~~l~t~~~d~~i~vw~~-~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 109 (409)
..+.|+. ..+| ..+..|..+|.|.-.-. ..+ ..............+|..+.++++...|.+++.++.+
T Consensus 363 ~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~ 442 (590)
T 3nvq_A 363 HYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVS 442 (590)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEE
T ss_pred cEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEE
Confidence 3455553 2444 35667888888753332 222 1111112221234578999999999999998877665
Q ss_pred EE
Q 015301 110 NI 111 (409)
Q Consensus 110 ~~ 111 (409)
++
T Consensus 443 qV 444 (590)
T 3nvq_A 443 QV 444 (590)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 400
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=21.77 E-value=2.8e+02 Score=25.61 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=38.8
Q ss_pred CCCEEEEEeCCCeEEEEEccC-C---ceEEEecc--CCcce-eeeEEecCcCeEEeecCCCeEEE
Q 015301 324 AQKYIYTGSSDNSVYIYDLVS-G---AQVAKLDF--HNAPV-RDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 324 ~~~~l~~~~~dg~v~i~d~~~-~---~~~~~~~~--~~~~v-~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
+-..++.|+.+|.|.-.-+.. . ..+.++.. ...+| ..|.++++..+|+.++.++.+++
T Consensus 411 ~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 411 GYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp TEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 345778899999887544432 1 23334322 34576 69999998888988887776666
No 401
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=20.27 E-value=3.2e+02 Score=24.23 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred EEEEEeCCCeEEEEEcc---CCceEEEec-cCCcce-eeeEEecCcCeEEeecCCCeEEE
Q 015301 327 YIYTGSSDNSVYIYDLV---SGAQVAKLD-FHNAPV-RDCCWHPIYPMLISSSWDCNIVR 381 (409)
Q Consensus 327 ~l~~~~~dg~v~i~d~~---~~~~~~~~~-~~~~~v-~~~~~s~~~~~l~s~~~dg~i~i 381 (409)
.++.|+.+|.|.-.-+. ....+..+. ....+| ..|.++++...|+.++.++.+++
T Consensus 402 V~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 402 IAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Done!