BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015302
         (409 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SQI3|FATB_GOSHI Palmitoyl-acyl carrier protein thioesterase, chloroplastic
           OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
          Length = 413

 Score =  292 bits (747), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 155/340 (45%), Positives = 211/340 (62%), Gaps = 42/340 (12%)

Query: 63  VAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL 122
           +AAEK+   ++    R ++      +DP+  G I++ G+ + Q   +RSYE+G D+TA++
Sbjct: 99  LAAEKQWMMLDWKPRRPDM-----VIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASI 153

Query: 123 ESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182
           E+++N  QETA+NH   +GLL  GFGAT  M + NLIWVV+RMQV +D YP WG+VV++D
Sbjct: 154 ETLMNHLQETAINHCRSAGLLGEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVD 213

Query: 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPW 242
           TWV ASGKNGMRRDWL+ +  TG I  RAT     WVMMN+ TRRLSKIP EVR EI P+
Sbjct: 214 TWVSASGKNGMRRDWLVSNSETGEILTRATS---VWVMMNKLTRRLSKIPEEVRGEIEPF 270

Query: 243 FIDKQAIIEDVPEKISKLDD-TAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRI 301
           F++   ++ +  +K+ KLDD TA++V   L PK SDLD+N HVNNVKY+ W+LE+ P  I
Sbjct: 271 FMNSDPVLAEDSQKLVKLDDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPI 330

Query: 302 LESNQLSGITLEYRRECGGSDVVQSLCQPDEDGILKDGVKQDTASIRLLNGFSLASEIVD 361
           LES++LS +TLEYRRECG   V+QSL        + D   ++  ++              
Sbjct: 331 LESHELSALTLEYRRECGRDSVLQSLT------TVSDSNTENAVNV-------------- 370

Query: 362 GGGLIASFEKGPLRFTHLLQAKGETQNEEIVRGRTTWKKK 401
                     G     HLL+        EIVRGRT W+ K
Sbjct: 371 ----------GEFNCQHLLRLD---DGAEIVRGRTRWRPK 397


>sp|Q9SJE2|FATB_ARATH Palmitoyl-acyl carrier protein thioesterase, chloroplastic
           OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
          Length = 412

 Score =  291 bits (746), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 156/348 (44%), Positives = 212/348 (60%), Gaps = 42/348 (12%)

Query: 63  VAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL 122
           +AAEK+   ++    R ++      VDP+  G I++ G+ +RQ   +RSYE+G D++A++
Sbjct: 104 LAAEKQWMMLDWKPRRSDM-----LVDPFGIGRIVQDGLVFRQNFSIRSYEIGADRSASI 158

Query: 123 ESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182
           E+++N  QETALNHV  +GLL +GFG+T  M + NLIWVV+RMQV +D YP WG+VVE+D
Sbjct: 159 ETVMNHLQETALNHVKTAGLLGDGFGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDVVEVD 218

Query: 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPW 242
           TWV  SGKNGMRRDWL+R   TG    RA+     WVMMN+ TRRLSKIP EVR EI P+
Sbjct: 219 TWVSQSGKNGMRRDWLVRDCNTGETLTRASS---VWVMMNKLTRRLSKIPEEVRGEIEPY 275

Query: 243 FIDKQAIIEDVPEKISKLDD-TAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRI 301
           F++   ++ +   K++K+DD TA YV S L P+ SDLD+N HVNNVKY+ W+LE+ P  I
Sbjct: 276 FVNSDPVLAEDSRKLTKIDDKTADYVRSGLTPRWSDLDVNQHVNNVKYIGWILESAPVGI 335

Query: 302 LESNQLSGITLEYRRECGGSDVVQSLCQPDEDGILKDGVKQDTASIRLLNGFSLASEIVD 361
           +E  +L  +TLEYRRECG   V+QSL                            A    D
Sbjct: 336 MERQKLKSMTLEYRRECGRDSVLQSLT---------------------------AVTGCD 368

Query: 362 GGGLIASFEKGPLRFTHLLQAKGETQNEEIVRGRTTWKKKPSSMPFST 409
            G L  +   G +   HLL+ +      E+VRGRT W  K  +  + T
Sbjct: 369 IGNLATA---GDVECQHLLRLQ---DGAEVVRGRTEWSSKTPTTTWGT 410


>sp|Q39513|FATB_CUPHO Palmitoyl-acyl carrier protein thioesterase, chloroplastic
           OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1
          Length = 415

 Score =  285 bits (728), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 152/348 (43%), Positives = 211/348 (60%), Gaps = 47/348 (13%)

Query: 55  VASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEV 114
           +A+     +AAEK+   ++    R ++      VDP+  G I++ G+ +RQ   +RSYE+
Sbjct: 95  LAAITTVFLAAEKQWMMLDWKPKRPDM-----LVDPFGLGSIVQDGLVFRQNFSIRSYEI 149

Query: 115 GPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPI 174
           G D+TA++E+++N  QETALNHV ++GL ++GFG T  M + +LIWVV++MQV ++ YP 
Sbjct: 150 GADRTASIETVMNHLQETALNHVKIAGLSNDGFGRTPEMYKRDLIWVVAKMQVMVNRYPT 209

Query: 175 WGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAE 234
           WG+ VE++TWV  SGKNGMRRDWLI    TG I  RA+     WVMMNQ+TRRLSKIP E
Sbjct: 210 WGDTVEVNTWVAKSGKNGMRRDWLISDCNTGEILTRASS---VWVMMNQKTRRLSKIPDE 266

Query: 235 VRAEISPWFIDKQAIIEDVPEKISKLDD-TAKYVNSDLKPKRSDLDMNHHVNNVKYVRWM 293
           VR EI P F+D   +IED   K+ KLD+ TA  +   L P+ +DLD+N HVNNVKY+ W+
Sbjct: 267 VRNEIEPHFVDSPPVIEDDDRKLPKLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWI 326

Query: 294 LETIPDRILESNQLSGITLEYRRECGGSDVVQSLCQPDEDGILKDGVKQDTASIRLLNGF 353
           LE+ P  +LE+ +L  +TLEYRRECG   V++SL   D                      
Sbjct: 327 LESTPPEVLETQELCSLTLEYRRECGRESVLESLTAMDP--------------------- 365

Query: 354 SLASEIVDGGGLIASFEKGPLRFTHLLQAKGETQNEEIVRGRTTWKKK 401
                   GGG  + F+       HLL+ +      EIV+GRT W+ K
Sbjct: 366 -------SGGGYGSQFQ-------HLLRLE---DGGEIVKGRTEWRPK 396


>sp|Q39473|FATB_CINCA Myristoyl-acyl carrier protein thioesterase, chloroplastic
           OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1
          Length = 382

 Score =  251 bits (641), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/323 (43%), Positives = 186/323 (57%), Gaps = 50/323 (15%)

Query: 82  PTKKQFVDPY--RHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWM 139
           P   Q +D +   HGL+      +R+T  +RSYEVGPD++ ++ +++N  QE ALNH   
Sbjct: 90  PNPPQLLDDHFGPHGLV------FRRTFAIRSYEVGPDRSTSIVAVMNHLQEAALNHAKS 143

Query: 140 SGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLI 199
            G+L +GFG T  M + +LIWVV R  V ++ YP WG+ VE++ WVGASG NG R D+L+
Sbjct: 144 VGILGDGFGTTLEMSKRDLIWVVKRTHVAVERYPAWGDTVEVECWVGASGNNGRRHDFLV 203

Query: 200 RSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPEKISK 259
           R   TG I  R T      VMMN +TRRLSKIP EVR EI P FID  A+ ++  +K  K
Sbjct: 204 RDCKTGEILTRCTSLS---VMMNTRTRRLSKIPEEVRGEIGPAFIDNVAVKDEEIKKPQK 260

Query: 260 LDD-TAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRILESNQLSGITLEYRREC 318
           L+D TA Y+   L P+ +DLD+N HVNN+KYV W+LET+PD I ES+ +S  T+EYRREC
Sbjct: 261 LNDSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRREC 320

Query: 319 GGSDVVQSLCQPDEDGILKDGVKQDTASIRLLNGFSLASEIVDGGGLIASFEKGPLRFTH 378
               V+QSL                                V GG    S E G L   H
Sbjct: 321 TMDSVLQSLT------------------------------TVSGG----SSEAG-LVCEH 345

Query: 379 LLQAKGETQNEEIVRGRTTWKKK 401
           LLQ +G     E++R +T W+ K
Sbjct: 346 LLQLEG---GSEVLRAKTEWRPK 365


>sp|Q41635|FATB_UMBCA Lauroyl-acyl carrier protein thioesterase, chloroplastic
           OS=Umbellularia californica GN=FATB1 PE=1 SV=1
          Length = 382

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/323 (42%), Positives = 186/323 (57%), Gaps = 50/323 (15%)

Query: 82  PTKKQFVDPY--RHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWM 139
           P   Q +D +   HGL+      +R+T  +RSYEVGPD++ ++ +++N  QE  LNH   
Sbjct: 90  PKLPQLLDDHFGLHGLV------FRRTFAIRSYEVGPDRSTSILAVMNHMQEATLNHAKS 143

Query: 140 SGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLI 199
            G+L +GFG T  M + +L+WVV R  V ++ YP WG+ VE++ W+GASG NGMRRD+L+
Sbjct: 144 VGILGDGFGTTLEMSKRDLMWVVRRTHVAVERYPTWGDTVEVECWIGASGNNGMRRDFLV 203

Query: 200 RSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPEKISK 259
           R   TG I  R T      V+MN +TRRLS IP EVR EI P FID  A+ +D  +K+ K
Sbjct: 204 RDCKTGEILTRCTSLS---VLMNTRTRRLSTIPDEVRGEIGPAFIDNVAVKDDEIKKLQK 260

Query: 260 LDD-TAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRILESNQLSGITLEYRREC 318
           L+D TA Y+   L P+ +DLD+N HVNN+KYV W+ ET+PD I ES+ +S  TLEYRREC
Sbjct: 261 LNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRREC 320

Query: 319 GGSDVVQSLCQPDEDGILKDGVKQDTASIRLLNGFSLASEIVDGGGLIASFEKGPLRFTH 378
               V++SL                                V GG    S E G L   H
Sbjct: 321 TRDSVLRSLTT------------------------------VSGG----SSEAG-LVCDH 345

Query: 379 LLQAKGETQNEEIVRGRTTWKKK 401
           LLQ +G     E++R RT W+ K
Sbjct: 346 LLQLEG---GSEVLRARTEWRPK 365


>sp|Q42561|FATA1_ARATH Oleoyl-acyl carrier protein thioesterase 1, chloroplastic
           OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
          Length = 362

 Score =  248 bits (633), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 141/327 (43%), Positives = 186/327 (56%), Gaps = 41/327 (12%)

Query: 87  FVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNG 146
             D  R G + E G+ Y++  VVRSYEVG +KTAT+E+I NL QE   NH    G  ++G
Sbjct: 68  LADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEVGCNHAQSVGFSTDG 127

Query: 147 FGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGH 206
           F  T  M + +LIWV +RM +EI  YP WG+VVEI+TW  + G+ G RRDW+++   TG 
Sbjct: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIGTRRDWILKDSVTGE 187

Query: 207 IFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPE-------KISK 259
           +  RAT     WVMMNQ TRRL K+  +VR E   +   +  +    PE       KI K
Sbjct: 188 VTGRATS---KWVMMNQDTRRLQKVSDDVRDEYLVFCPQEPRLA--FPEENNRSLKKIPK 242

Query: 260 LDDTAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRILESNQLSGITLEYRRECG 319
           L+D A+Y    LKP+R+DLDMN HVNNV Y+ W+LE+IP  I+++++L  ITL+YRREC 
Sbjct: 243 LEDPAQYSMIGLKPRRADLDMNQHVNNVTYIGWVLESIPQEIVDTHELQVITLDYRRECQ 302

Query: 320 GSDVVQSLCQPDEDGILKDGVKQDTASIRLLNGFSLASEIVDGGGLIASFEKG--PLRFT 377
             DVV SL                          +  SEI    G   S  +G    +F 
Sbjct: 303 QDDVVDSLT-------------------------TTTSEIGGTNGSATSGTQGHNDSQFL 337

Query: 378 HLLQAKGETQNEEIVRGRTTWKKKPSS 404
           HLL+  G+ Q  EI RG T W+KKPSS
Sbjct: 338 HLLRLSGDGQ--EINRGTTLWRKKPSS 362


>sp|Q42712|FATA_CORSA Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)
           OS=Coriandrum sativum GN=FATA PE=2 SV=1
          Length = 369

 Score =  245 bits (626), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/324 (42%), Positives = 187/324 (57%), Gaps = 33/324 (10%)

Query: 87  FVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNG 146
             +  R G + E G+ Y++  +VR YEVG +KTAT+E+I NL QE   NH    G  ++G
Sbjct: 66  LAEKLRLGSLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGGNHAQSVGFSTDG 125

Query: 147 FGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGH 206
           F  T  M + +LIWV +RM +EI  YP W +VVEI+TW  + G+ G RRDW+I+  AT  
Sbjct: 126 FATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDFATDE 185

Query: 207 IFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPE-------KISK 259
           +  RAT     WVMMNQ TRRL K+  +VR E    F  K   +   PE       KISK
Sbjct: 186 VIGRATS---KWVMMNQDTRRLQKVSDDVRDEYLV-FCPKTPRLS-FPEENNKSLKKISK 240

Query: 260 LDDTAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRILESNQLSGITLEYRRECG 319
           L+D A++    L P+R+DLDMN HVNNV Y+ W+LE+IP  +L +++L  ITL+YRREC 
Sbjct: 241 LEDPAQHSRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQ 300

Query: 320 GSDVVQSLCQPDEDGILKDGVKQDTASIRLL--NGFSLASEIVDGGGLIASFEKGPLRFT 377
             DVV SL  P+        V +DTA  +++  NG + A+                L+F 
Sbjct: 301 HDDVVDSLTSPE--------VDEDTAVTKIIGTNGHAAAA---------TEARDDSLKFL 343

Query: 378 HLLQAKGETQNEEIVRGRTTWKKK 401
           H L+  G  Q  EI RGRT W+KK
Sbjct: 344 HFLRVSG--QGLEINRGRTEWRKK 365


>sp|Q9SV64|FATA2_ARATH Oleoyl-acyl carrier protein thioesterase 2, chloroplastic
           OS=Arabidopsis thaliana GN=FATA2 PE=2 SV=1
          Length = 367

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/322 (42%), Positives = 185/322 (57%), Gaps = 31/322 (9%)

Query: 89  DPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFG 148
           D  R G ++E G  Y++  +VRSYEVG +KTAT+E+I NL QE A NHV   G  ++GF 
Sbjct: 69  DRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVACNHVQNVGFSTDGFA 128

Query: 149 ATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIF 208
            T  M + +LIWV +RM +EI  YP W +VVEI+TW  + G+ G RRDW+++  ATG + 
Sbjct: 129 TTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEVI 188

Query: 209 ARATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPE-------KISKLD 261
            RAT     WVMMNQ TRRL ++  EVR E   +   +  +    PE       KI KL+
Sbjct: 189 GRATS---KWVMMNQDTRRLQRVTDEVRDEYLVFCPPEPRLA--FPEENNSSLKKIPKLE 243

Query: 262 DTAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRILESNQLSGITLEYRRECGGS 321
           D A+Y    LKP+R+DLDMN HVNNV Y+ W+LE+IP  I+++++L  ITL+YRREC   
Sbjct: 244 DPAQYSMLGLKPRRADLDMNQHVNNVTYIGWVLESIPQEIIDTHELKVITLDYRRECQQD 303

Query: 322 DVVQSLCQPDEDGILKDGVKQDTASIRLLNGFSLASEIVDGGGLIASFEKGPLRFTHLLQ 381
           D+V SL   +    +          +  L G        +G    +  E     F H+L+
Sbjct: 304 DIVDSLTTSETPNEV----------VSKLTG-------TNGSTTSSKREHNESHFLHILR 346

Query: 382 AKGETQNEEIVRGRTTWKKKPS 403
                Q  EI RGRT W+KK S
Sbjct: 347 LSENGQ--EINRGRTQWRKKSS 366


>sp|A6Q367|RTPR_NITSB Probable adenosylcobalamin-dependent ribonucleoside-triphosphate
           reductase OS=Nitratiruptor sp. (strain SB155-2) GN=rtpR
           PE=3 SV=1
          Length = 650

 Score = 32.7 bits (73), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 242 WFIDKQAIIEDVPEKISKLDDTAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRI 301
           W  +   +IE++ +    +D     + S+ +P      + H  N  KY R+  E +PDR 
Sbjct: 297 WISNNSVVIENL-DDFHYIDAITSLIASNGEP-----GVLHLENMQKYGRFG-EIVPDRA 349

Query: 302 LESNQLSGITLEYRRECGGSDVVQSLCQPDED 333
             SN    I LE    C  S++  S C  +ED
Sbjct: 350 WLSNPCGEIALESYELCNLSEIFISKCSNEED 381


>sp|Q2RQI0|SYA_RHORT Alanine--tRNA ligase OS=Rhodospirillum rubrum (strain ATCC 11170 /
           NCIB 8255) GN=alaS PE=3 SV=1
          Length = 883

 Score = 32.3 bits (72), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 252 DVPEKISKLDDTAKYVNSDLKPKRSDLDMNH---------HVNNVKYVRWMLETIPDRIL 302
           D+P +I  L D  + +  DL   R  L              +N VK+V  +LE +P    
Sbjct: 736 DLPGRIQALLDDRRRLERDLADARRKLATGGGGAAAPAVVEINGVKWVGRLLEDVP---- 791

Query: 303 ESNQLSGITLEYRRECGGSDVVQSLCQPDEDGILKDGVKQD 343
            +  L G+  E +++  GS VV  +   D    L  GV +D
Sbjct: 792 -AKDLKGMVDEVKKQL-GSGVVALIAVADGKASLVVGVTED 830


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,678,307
Number of Sequences: 539616
Number of extensions: 6085314
Number of successful extensions: 16136
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 16105
Number of HSP's gapped (non-prelim): 18
length of query: 409
length of database: 191,569,459
effective HSP length: 120
effective length of query: 289
effective length of database: 126,815,539
effective search space: 36649690771
effective search space used: 36649690771
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)