Query 015302
Match_columns 409
No_of_seqs 384 out of 1841
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02370 acyl-ACP thioesterase 100.0 2.6E-70 5.5E-75 559.1 32.4 311 50-403 94-405 (419)
2 PF01643 Acyl-ACP_TE: Acyl-ACP 100.0 3E-54 6.4E-59 418.5 24.4 255 100-400 1-261 (261)
3 COG3884 FatA Acyl-ACP thioeste 100.0 9.9E-35 2.2E-39 272.2 16.2 215 101-333 2-219 (250)
4 PRK10800 acyl-CoA thioesterase 99.9 7.5E-25 1.6E-29 190.1 17.1 128 102-239 2-129 (130)
5 TIGR02799 thio_ybgC tol-pal sy 99.9 8.3E-23 1.8E-27 175.1 15.7 124 103-237 1-125 (126)
6 TIGR00051 acyl-CoA thioester h 99.9 1.7E-22 3.8E-27 169.9 14.9 117 106-232 1-117 (117)
7 COG0824 FcbC Predicted thioest 99.9 1.3E-21 2.7E-26 173.2 16.3 131 100-241 3-133 (137)
8 PRK07531 bifunctional 3-hydrox 99.8 9.9E-19 2.2E-23 184.2 16.8 131 101-242 344-474 (495)
9 PF13279 4HBT_2: Thioesterase- 99.8 3.3E-18 7.1E-23 145.7 15.8 119 109-239 1-121 (121)
10 cd00586 4HBT 4-hydroxybenzoyl- 99.7 9.2E-16 2E-20 124.9 14.2 110 103-222 1-110 (110)
11 PRK10800 acyl-CoA thioesterase 99.3 2.1E-11 4.6E-16 105.7 9.1 92 269-399 5-109 (130)
12 COG0824 FcbC Predicted thioest 99.2 3.1E-11 6.8E-16 106.8 9.5 65 269-333 8-85 (137)
13 TIGR00051 acyl-CoA thioester h 99.2 6.2E-11 1.3E-15 99.5 9.9 64 270-333 1-77 (117)
14 cd03442 BFIT_BACH Brown fat-in 99.2 9E-10 2E-14 93.0 15.8 113 101-232 6-123 (123)
15 TIGR02799 thio_ybgC tol-pal sy 99.2 1.1E-10 2.4E-15 99.9 9.8 65 269-333 3-81 (126)
16 PF13279 4HBT_2: Thioesterase- 99.2 1.2E-10 2.6E-15 99.0 8.8 58 273-332 1-71 (121)
17 cd00586 4HBT 4-hydroxybenzoyl- 98.9 1.4E-08 3.1E-13 82.3 9.4 65 269-333 3-80 (110)
18 cd03440 hot_dog The hotdog fol 98.8 1.7E-07 3.6E-12 71.1 13.6 96 104-213 2-97 (100)
19 PRK07531 bifunctional 3-hydrox 98.7 7.3E-08 1.6E-12 102.1 10.4 66 268-333 347-424 (495)
20 PF03061 4HBT: Thioesterase su 98.6 9.2E-07 2E-11 68.8 12.5 79 117-209 1-79 (79)
21 PF01643 Acyl-ACP_TE: Acyl-ACP 98.5 7E-07 1.5E-11 87.0 10.1 129 65-218 112-259 (261)
22 cd03443 PaaI_thioesterase PaaI 98.4 8.9E-06 1.9E-10 67.6 14.3 100 102-219 13-112 (113)
23 PLN02370 acyl-ACP thioesterase 98.2 6.1E-06 1.3E-10 85.7 10.4 133 64-219 247-401 (419)
24 PRK10694 acyl-CoA esterase; Pr 98.0 0.00024 5.2E-09 62.9 14.7 111 104-233 13-131 (133)
25 cd03440 hot_dog The hotdog fol 97.9 0.00012 2.6E-09 55.1 9.2 64 270-333 4-73 (100)
26 PF12590 Acyl-thio_N: Acyl-ATP 97.8 2.3E-06 5E-11 74.0 -1.4 33 50-89 97-129 (129)
27 cd03442 BFIT_BACH Brown fat-in 97.7 0.00024 5.2E-09 59.7 9.6 66 268-333 9-79 (123)
28 PLN02647 acyl-CoA thioesterase 97.6 0.0048 1E-07 64.8 18.3 214 108-331 99-360 (437)
29 TIGR00369 unchar_dom_1 unchara 97.4 0.0067 1.5E-07 51.5 14.1 98 104-219 19-116 (117)
30 COG1607 Acyl-CoA hydrolase [Li 97.4 0.0064 1.4E-07 55.5 14.6 113 105-235 16-132 (157)
31 COG3884 FatA Acyl-ACP thioeste 97.2 0.0011 2.3E-08 63.7 7.9 87 101-213 151-237 (250)
32 TIGR02286 PaaD phenylacetic ac 97.2 0.018 3.9E-07 48.7 14.6 97 104-220 17-113 (114)
33 PF03061 4HBT: Thioesterase su 97.1 0.0007 1.5E-08 52.4 4.8 53 281-333 1-59 (79)
34 cd03443 PaaI_thioesterase PaaI 96.3 0.04 8.7E-07 45.4 9.5 65 268-333 15-85 (113)
35 PRK10293 acyl-CoA esterase; Pr 96.3 0.21 4.4E-06 44.3 14.4 100 104-221 37-136 (136)
36 PRK11688 hypothetical protein; 96.1 0.22 4.7E-06 44.7 14.0 110 104-220 40-153 (154)
37 COG5496 Predicted thioesterase 95.9 0.36 7.8E-06 42.5 14.0 109 98-224 2-117 (130)
38 PRK10254 thioesterase; Provisi 95.8 0.63 1.4E-05 41.4 15.4 100 104-221 37-136 (137)
39 COG2050 PaaI HGG motif-contain 95.6 0.44 9.6E-06 41.9 13.7 104 103-223 36-139 (141)
40 KOG3328 HGG motif-containing t 95.1 0.28 6.1E-06 44.3 10.7 96 104-213 40-135 (148)
41 cd03449 R_hydratase (R)-hydrat 94.8 0.38 8.3E-06 40.6 10.5 54 159-213 69-124 (128)
42 PLN02322 acyl-CoA thioesterase 93.1 4.9 0.00011 36.6 14.8 101 104-221 29-134 (154)
43 PF14539 DUF4442: Domain of un 92.3 3.2 7E-05 36.3 12.2 99 102-219 30-131 (132)
44 cd01288 FabZ FabZ is a 17kD be 92.0 3.3 7.2E-05 35.0 11.7 85 121-220 46-130 (131)
45 PLN02647 acyl-CoA thioesterase 92.0 3.9 8.5E-05 43.3 14.4 115 103-234 291-415 (437)
46 cd00556 Thioesterase_II Thioes 91.6 1.2 2.6E-05 35.8 8.0 55 158-213 41-95 (99)
47 PLN02864 enoyl-CoA hydratase 91.3 16 0.00035 36.8 17.4 59 161-222 95-157 (310)
48 cd03455 SAV4209 SAV4209 is a S 90.7 2 4.4E-05 36.6 9.0 53 160-213 67-120 (123)
49 PRK13691 (3R)-hydroxyacyl-ACP 90.5 3.6 7.7E-05 37.7 10.9 66 161-230 85-154 (166)
50 COG4109 Predicted transcriptio 90.1 1.7 3.6E-05 44.8 9.0 102 95-213 325-426 (432)
51 cd03447 FAS_MaoC FAS_MaoC, the 89.3 3.8 8.3E-05 35.6 9.7 52 162-213 70-121 (126)
52 cd03441 R_hydratase_like (R)-h 89.1 4.1 8.8E-05 34.0 9.6 55 158-213 66-124 (127)
53 TIGR01750 fabZ beta-hydroxyacy 88.9 15 0.00032 31.9 13.9 83 120-213 53-136 (140)
54 cd03454 YdeM YdeM is a Bacillu 87.8 2.8 6.1E-05 36.3 7.9 48 165-213 81-135 (140)
55 cd03446 MaoC_like MoaC_like 87.7 3.4 7.3E-05 35.7 8.3 48 165-213 83-136 (140)
56 PRK13692 (3R)-hydroxyacyl-ACP 87.2 7.6 0.00017 35.2 10.6 60 163-226 87-150 (159)
57 cd03453 SAV4209_like SAV4209_l 86.5 5.5 0.00012 34.1 8.9 50 163-213 71-124 (127)
58 PRK00006 fabZ (3R)-hydroxymyri 86.4 22 0.00047 31.1 15.8 85 120-221 60-145 (147)
59 cd00493 FabA_FabZ FabA/Z, beta 86.3 19 0.0004 30.2 12.1 87 117-213 41-127 (131)
60 PRK04424 fatty acid biosynthes 85.4 7.9 0.00017 36.0 9.9 59 157-220 123-181 (185)
61 cd03451 FkbR2 FkbR2 is a Strep 85.0 5 0.00011 34.8 8.0 48 165-213 84-138 (146)
62 PF13452 MaoC_dehydrat_N: N-te 81.9 5.1 0.00011 34.3 6.7 52 158-210 73-131 (132)
63 PRK08190 bifunctional enoyl-Co 80.3 13 0.00028 39.5 10.4 65 160-228 83-149 (466)
64 PF13622 4HBT_3: Thioesterase- 80.2 11 0.00025 35.7 9.1 51 160-213 34-84 (255)
65 cd03445 Thioesterase_II_repeat 79.1 15 0.00033 30.2 8.3 51 161-213 40-90 (94)
66 cd03452 MaoC_C MaoC_C The C-t 78.1 12 0.00026 32.9 7.9 48 165-213 81-134 (142)
67 TIGR02286 PaaD phenylacetic ac 74.6 39 0.00084 28.2 9.9 64 269-332 18-84 (114)
68 KOG4366 Predicted thioesterase 70.0 1.8 3.8E-05 40.7 0.6 115 112-245 60-177 (213)
69 PRK10694 acyl-CoA esterase; Pr 70.0 8.8 0.00019 33.8 5.0 64 270-333 15-83 (133)
70 KOG4366 Predicted thioesterase 68.2 1.7 3.8E-05 40.8 0.1 54 276-329 60-126 (213)
71 PF03756 AfsA: A-factor biosyn 65.5 53 0.0011 28.3 9.0 87 117-219 40-131 (132)
72 TIGR02447 yiiD_Cterm thioester 62.4 1.1E+02 0.0024 26.8 13.5 100 104-221 25-137 (138)
73 TIGR00189 tesB acyl-CoA thioes 59.8 33 0.00072 33.1 7.3 50 162-213 46-95 (271)
74 cd03453 SAV4209_like SAV4209_l 56.8 71 0.0015 27.2 8.1 27 306-332 69-95 (127)
75 PRK11688 hypothetical protein; 55.5 72 0.0016 28.4 8.3 64 268-332 40-124 (154)
76 PF07977 FabA: FabA-like domai 52.8 1E+02 0.0022 26.7 8.6 88 117-212 47-138 (138)
77 cd03449 R_hydratase (R)-hydrat 49.2 1E+02 0.0022 25.5 7.8 26 307-332 72-97 (128)
78 PRK13188 bifunctional UDP-3-O- 48.1 1.6E+02 0.0035 31.6 10.6 85 121-221 374-460 (464)
79 cd03448 HDE_HSD HDE_HSD The R 47.5 1E+02 0.0022 26.5 7.7 47 161-212 71-117 (122)
80 PF01575 MaoC_dehydratas: MaoC 45.2 44 0.00096 28.3 5.0 32 158-189 74-105 (122)
81 PRK10526 acyl-CoA thioesterase 42.6 96 0.0021 30.7 7.6 52 160-213 55-106 (286)
82 cd03441 R_hydratase_like (R)-h 41.3 57 0.0012 26.9 5.0 29 305-333 68-96 (127)
83 cd03444 Thioesterase_II_repeat 40.0 1.7E+02 0.0037 24.3 7.7 53 160-213 48-100 (104)
84 cd01289 FabA_like Domain of un 38.1 2.7E+02 0.0059 24.2 13.1 87 117-213 44-132 (138)
85 COG2030 MaoC Acyl dehydratase 37.0 1.8E+02 0.004 26.0 7.9 58 160-221 94-155 (159)
86 cd03455 SAV4209 SAV4209 is a S 36.2 68 0.0015 27.0 4.7 28 305-332 67-94 (123)
87 cd01287 FabA FabA, beta-hydrox 34.2 3.1E+02 0.0068 24.5 8.9 89 117-213 49-142 (150)
88 COG1607 Acyl-CoA hydrolase [Li 33.5 92 0.002 28.6 5.3 65 270-334 17-86 (157)
89 TIGR00369 unchar_dom_1 unchara 29.8 3.2E+02 0.007 22.6 10.0 64 268-332 19-88 (117)
90 cd03446 MaoC_like MoaC_like 27.5 2.6E+02 0.0057 23.7 7.0 22 311-332 84-105 (140)
91 PF01575 MaoC_dehydratas: MaoC 27.0 91 0.002 26.3 4.0 50 281-332 54-103 (122)
92 TIGR02278 PaaN-DH phenylacetic 26.6 1.8E+02 0.004 32.4 7.2 48 165-213 604-657 (663)
93 PRK13692 (3R)-hydroxyacyl-ACP 26.1 2.7E+02 0.0059 25.0 7.1 24 309-332 88-111 (159)
94 COG0764 FabA 3-hydroxymyristoy 25.4 5E+02 0.011 23.4 10.1 61 158-222 85-145 (147)
95 PLN02864 enoyl-CoA hydratase 25.1 3.2E+02 0.0069 27.5 8.1 48 161-213 254-301 (310)
96 PRK11563 bifunctional aldehyde 25.0 1.8E+02 0.0039 32.5 6.8 47 166-213 617-669 (675)
97 PF13622 4HBT_3: Thioesterase- 24.6 5.9E+02 0.013 23.9 9.5 51 162-213 200-251 (255)
98 cd03448 HDE_HSD HDE_HSD The R 24.3 2.3E+02 0.005 24.3 6.0 28 306-333 71-98 (122)
99 PLN02868 acyl-CoA thioesterase 22.6 2.5E+02 0.0054 29.1 7.0 51 161-213 182-232 (413)
100 PF02551 Acyl_CoA_thio: Acyl-C 21.4 5.4E+02 0.012 23.0 7.8 96 107-213 32-128 (131)
101 TIGR00189 tesB acyl-CoA thioes 20.4 5.2E+02 0.011 24.7 8.3 52 161-213 215-266 (271)
102 cd03447 FAS_MaoC FAS_MaoC, the 20.2 5.5E+02 0.012 21.9 8.2 27 306-332 69-95 (126)
No 1
>PLN02370 acyl-ACP thioesterase
Probab=100.00 E-value=2.6e-70 Score=559.09 Aligned_cols=311 Identities=50% Similarity=0.887 Sum_probs=274.6
Q ss_pred cccccceeeeehhhhhhccccccchhhccccCCCcccccccccccccccCceeEEEEEEeeecccCCCCCcCHHHHHHHH
Q 015302 50 SQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLF 129 (409)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~g~~y~~~~~VR~~EvD~~g~v~~~~~l~yl 129 (409)
||...++||||. ||||||+++||++.|+ ++|+|+|++|+||+||++|+++|+||+||||.+|++++.+++|||
T Consensus 94 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~y~~~f~Ir~yEvD~~g~lsl~~L~n~l 166 (419)
T PLN02370 94 SMLLAAITTIFL--AAEKQWMMLDWKPRRS-----DMLIDPFGIGRIVQDGLVFRQNFSIRSYEIGADRTASIETLMNHL 166 (419)
T ss_pred HHHHHHHHHHHH--hhhhhhhhhcccCCCC-----cccccccccCceeccCcEEEEEEEEeeEEECCCCCCCHHHHHHHH
Confidence 677889999998 9999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEE
Q 015302 130 QETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFA 209 (409)
Q Consensus 130 QEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~Gevia 209 (409)
||+|.+|+...|.+++||+..++|.+.|++|||++++|+|+|||+|||+|+|+||+.+.+++++.|+|+|+|..+|++++
T Consensus 167 Qd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la 246 (419)
T PLN02370 167 QETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLT 246 (419)
T ss_pred HHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEE
Confidence 99999999877777778876568999999999999999999999999999999999999999999999999855899999
Q ss_pred EEEEccEEEEEEEcCCCceecCCHHHHHhcCccccccccccccCcccccCCCcc-ccccccceeeccccCccCCccchHH
Q 015302 210 RATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPEKISKLDDT-AKYVNSDLKPKRSDLDMNHHVNNVK 288 (409)
Q Consensus 210 rAtS~~~~WV~mD~~tRRp~riPeevre~i~p~~~~~~~~~~~~~~ki~kl~~~-~~~~~~~~~vr~sDlD~NgHVNN~~ 288 (409)
+|+| +||+||++||||+|||+++++.+.+|..+.....++.++|++++++. +++....++|||+|||+||||||++
T Consensus 247 ~A~S---vWV~mD~~TRRpvRIP~Evr~~i~~y~~~~~~~i~~~~~kl~~l~~~~~~~~~~~~~VRysDLD~NgHVNNvk 323 (419)
T PLN02370 247 RASS---VWVMMNKLTRRLSKIPEEVRGEIEPYFLNSDPVVNEDSRKLPKLDDKTADYIRKGLTPRWSDLDVNQHVNNVK 323 (419)
T ss_pred EEEE---EEEEEECCCCcccCCCHHHHHhhhhcccccccccccccccCCccccccccceeeeeeecHHHCcccCccccHH
Confidence 9999 99999999999999999999888888765433333456788877642 3344456999999999999999999
Q ss_pred HHHHHHHhCCcchhcccceEEEEEEEecccCCCCeEEEEEEEcCCceeeeceeccccceeeccCcccceeeecCCCcccc
Q 015302 289 YVRWMLETIPDRILESNQLSGITLEYRRECGGSDVVQSLCQPDEDGILKDGVKQDTASIRLLNGFSLASEIVDGGGLIAS 368 (409)
Q Consensus 289 Yl~w~~ealp~~~~~~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~ 368 (409)
|++|++|++|.++++.|.+++++|+|++||.+||.|++.+.+.+++. |. .
T Consensus 324 Yi~Wild~lP~e~l~~~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~--------------------------~~----~ 373 (419)
T PLN02370 324 YIGWILESAPPPIMESHELAAITLEYRRECGRDSVLQSLTAVSGTGI--------------------------GN----L 373 (419)
T ss_pred HHHHHHhhCchhhhhcceEEEEEEEEcccCCCCCEEEEEEeeccccc--------------------------cc----c
Confidence 99999999999999999999999999999999999999988654321 00 0
Q ss_pred cCCCceEEEEEEEecCCCCcceEEEeEeeeecCCC
Q 015302 369 FEKGPLRFTHLLQAKGETQNEEIVRGRTTWKKKPS 403 (409)
Q Consensus 369 ~~~~~~~~~hllr~~~~~~~~ei~rgrT~W~~k~~ 403 (409)
.++....|.|++|.++| .|+++|+|+|+||.+
T Consensus 374 ~~~~~~~~~h~~~~~dG---~e~a~a~t~Wr~~~~ 405 (419)
T PLN02370 374 GTAGDVECQHLLRLEDG---AEIVRGRTEWRPKHA 405 (419)
T ss_pred cCCCcceEEEEEEcCCC---eEEEEEEEEEEECCc
Confidence 01122569999997766 899999999999964
No 2
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=100.00 E-value=3e-54 Score=418.49 Aligned_cols=255 Identities=35% Similarity=0.625 Sum_probs=184.1
Q ss_pred ceeEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcc-----hhhccCCeEEEEEEeEEEEeecCC
Q 015302 100 GVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGAT-----HGMMRNNLIWVVSRMQVEIDHYPI 174 (409)
Q Consensus 100 g~~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~-----~~m~~~gl~WVV~r~~Ie~~r~p~ 174 (409)
|++|+++++|+++|||.+|++++.++++||||+|..|+... |+|.. ++|.+.|++|||+|++|+|.|+|.
T Consensus 1 g~~y~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~l-----G~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~ 75 (261)
T PF01643_consen 1 GLVYEKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESL-----GFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPR 75 (261)
T ss_dssp ---EEEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHT-----T-SHHH------HHCTTEEEEEEEEEEEESS--B
T ss_pred CceEEEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHh-----CCCcccchhhhhHhhcCcEEEEEEEEEEEEecCC
Confidence 67999999999999999999999999999999999998643 55543 238999999999999999999999
Q ss_pred CCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceecCCHHHHHhcCcccccccc-ccccC
Q 015302 175 WGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFIDKQA-IIEDV 253 (409)
Q Consensus 175 ~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~riPeevre~i~p~~~~~~~-~~~~~ 253 (409)
|||+|+|+||+.+.+++++.|+|.|+|.++|++|++|+| .||+||++||||+|+|+++.+.+.+++.+... .....
T Consensus 76 ~~e~i~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s---~WvliD~~trr~~ri~~~~~~~~~~~~~~~~~~~~~~~ 152 (261)
T PF01643_consen 76 WGEKITIETWPSGFKRFFAYRDFEIYDAEDGELLARATS---IWVLIDLETRRPVRIPEEIIEEYGPFFPDELPEEDIRK 152 (261)
T ss_dssp TT-EEEEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEE---EEEEEETTT-SEE---GGCTCCGGGGB----T-EESSS
T ss_pred CCCEEEEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEE---EEEEEEhhhCCcccCCHHHHhhhhhhcccccccccccc
Confidence 999999999999999999999999997579999999999 99999999999999999888777544433210 01112
Q ss_pred cccccCCCccccccccceeeccccCccCCccchHHHHHHHHHhCCcchhcccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 254 PEKISKLDDTAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRILESNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 254 ~~ki~kl~~~~~~~~~~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~~~~~~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
..++++...........++||++|||+||||||++|++|++|++|.++++.+.+++++|.|++||.+||.|.+.+.++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~ 232 (261)
T PF01643_consen 153 LPKIPKNPPEEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLEKYQIKSIDINYKKEIRYGDTITSYTEVEKD 232 (261)
T ss_dssp ----------TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHCCEEEEEEEEEE-S--BTT-EEEEEEEEEEE
T ss_pred cccccccCChhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhccCCcEEEEEEEccccCCCCEEEEEEEEccc
Confidence 22332222222233568999999999999999999999999999999999999999999999999999999998876532
Q ss_pred ceeeeceeccccceeeccCcccceeeecCCCcccccCCCceEEEEEEEecCCCCcceEEEeEeeeec
Q 015302 334 GILKDGVKQDTASIRLLNGFSLASEIVDGGGLIASFEKGPLRFTHLLQAKGETQNEEIVRGRTTWKK 400 (409)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~hllr~~~~~~~~ei~rgrT~W~~ 400 (409)
. .+....|.|.||.++| .++++++|+|+|
T Consensus 233 ~-----------------------------------~~~~~~~~h~i~~~~g---~~~~~~~~~W~~ 261 (261)
T PF01643_consen 233 E-----------------------------------EEDGLSTLHEIRNEDG---EEVARARTEWQK 261 (261)
T ss_dssp C-----------------------------------CTTEEEEEEEEECT-T---CEEEEEEEEEE-
T ss_pred c-----------------------------------cCCceEEEEEEEcCCC---ceEEEEEEEEcC
Confidence 1 1133689999999885 899999999986
No 3
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=100.00 E-value=9.9e-35 Score=272.15 Aligned_cols=215 Identities=23% Similarity=0.364 Sum_probs=181.5
Q ss_pred eeEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCc--chhhccCCeEEEEEEeEEEEeecCCCCCE
Q 015302 101 VGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGA--THGMMRNNLIWVVSRMQVEIDHYPIWGEV 178 (409)
Q Consensus 101 ~~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~--~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~ 178 (409)
.+|.+.+.|.+|+.|+.|++.....+.+..+++..+. .|+|. ...+.+.++.|+|.|+.|++.|||.+||.
T Consensus 2 ~~~k~~~~vP~~~~d~~g~i~~~~~l~l~~~i~~~Qs-------i~lg~~~~~~lee~~l~WiV~~~~i~~ir~pef~e~ 74 (250)
T COG3884 2 SVDKQNMPVPFYWPDAVGDIDITSRLRLDLQIRGIQS-------IGLGQLDVAGLEEYHLLWIVRRTEIDVIRPPEFGEM 74 (250)
T ss_pred cchhhcCCCccchhhhcCCcchhhhhhhhhhhcceee-------cccchhhhhhHhhcCceEEEEEEEEEEeeccccCCc
Confidence 4677888999999999999999999999999876653 34441 12578899999999999999999999999
Q ss_pred EEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceecCCHHHHHhcCccccccccccccCccccc
Q 015302 179 VEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFIDKQAIIEDVPEKIS 258 (409)
Q Consensus 179 V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~riPeevre~i~p~~~~~~~~~~~~~~ki~ 258 (409)
|+|+||+.+..++++.|.|.+.+ .|+.++.+.+ .|++||.+||||+++++++.+.|.--+..+. .. -+..+.
T Consensus 75 iti~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a---~wilmn~dTrkp~ri~~d~la~~~~t~~~k~-~r--~~~~l~ 146 (250)
T COG3884 75 ITIETWCSSISNFFCYRRFRLDG--RGGGLIEIEA---FWILMNRDTRKPARITDDLLAPFNLTTEKKR-LR--WPKYLS 146 (250)
T ss_pred ceEEEeeccccceEEEEEEEEec--CCCcEEEEEE---EEEEEccccccceeccHHHhhhhcccchhhe-ec--cccccC
Confidence 99999999999999999999986 8999999999 9999999999999999999877653322211 11 122222
Q ss_pred C-CCccccccccceeeccccCccCCccchHHHHHHHHHhCCcchhcccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 259 K-LDDTAKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRILESNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 259 k-l~~~~~~~~~~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~~~~~~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
+ ++.. ....+.||+.|||+||||||++|++|++|.++.+++..+.+.+++|+|.+|..+|+.+++.+.+...
T Consensus 147 ~~~e~s---~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~p~r~~l~y~keva~G~~iti~~e~~~~ 219 (250)
T COG3884 147 SRLEAS---EIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGPLRLTLEYVKEVAPGEKITIVYEVHPL 219 (250)
T ss_pred cccccc---ccccceeEEEeeccccccccceehHHHHHHHhhhhHhhcccceeEEEEEcccCCCCeEEEEEEEccc
Confidence 1 2221 2357999999999999999999999999999999999999999999999999999999999988754
No 4
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.93 E-value=7.5e-25 Score=190.14 Aligned_cols=128 Identities=15% Similarity=0.209 Sum_probs=117.3
Q ss_pred eEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEE
Q 015302 102 GYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (409)
Q Consensus 102 ~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I 181 (409)
.|..+++||++|||++||+++..|++|||+|+..|+. ..|++.. .+.+.|.+|++++++|+|.+|+.+||+|+|
T Consensus 2 ~f~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~-----~~g~~~~-~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v 75 (130)
T PRK10800 2 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLR-----HHHFSQQ-ALLAERVAFVVRKMTVEYYAPARLDDMLEV 75 (130)
T ss_pred ceEEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHH-----HcCCCHH-HHHhCCCEEEEEEEEEEEcCcccCCCEEEE
Confidence 4788999999999999999999999999999999985 2366653 567789999999999999999999999999
Q ss_pred EEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceecCCHHHHHhc
Q 015302 182 DTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEI 239 (409)
Q Consensus 182 ~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~riPeevre~i 239 (409)
+||+.+.|+.++...|++++ .+|+++++|.+ +||++|.+++||+++|+++++.+
T Consensus 76 ~t~v~~~~~~s~~~~~~i~~-~~g~~~a~~~~---~~v~~d~~~~r~~~iP~~l~~~~ 129 (130)
T PRK10800 76 QSEITSMRGTSLTFTQRIVN-AEGTLLNEAEV---LIVCVDPLKMKPRALPKSIVAEF 129 (130)
T ss_pred EEEEEeeCcEEEEEEEEEEc-CCCeEEEEEEE---EEEEEECCCCcCcCCCHHHHHhh
Confidence 99999999999988999986 58999999999 99999999999999999998754
No 5
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.90 E-value=8.3e-23 Score=175.07 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=113.3
Q ss_pred EEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhh-ccCCeEEEEEEeEEEEeecCCCCCEEEE
Q 015302 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGM-MRNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (409)
Q Consensus 103 y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m-~~~gl~WVV~r~~Ie~~r~p~~gD~V~I 181 (409)
|+.+++|||+|||++||++++.|++|||+|+..++.. .|++.. .+ .+.|.+|++++++|+|.+|+++||.|.|
T Consensus 1 f~~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~-----~g~~~~-~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v 74 (126)
T TIGR02799 1 FRWPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRA-----LGFEQS-ALLEETGLVFVVRSMELDYLKPARLDDLLTV 74 (126)
T ss_pred CcceEEEEEeccCCCceEEechHHHHHHHHHHHHHHH-----cCCCHH-HHhhcCCcEEEEEEEEEEEcCcccCCCEEEE
Confidence 4678999999999999999999999999999999852 366653 45 3679999999999999999999999999
Q ss_pred EEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceecCCHHHHH
Q 015302 182 DTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRA 237 (409)
Q Consensus 182 ~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~riPeevre 237 (409)
+||+.+.++.++.+.|.|+. +|+++++|.+ +||++|.++|||+++|+++++
T Consensus 75 ~~~v~~~~~~~~~~~~~i~~--~g~~~a~~~~---~~v~vd~~~~~~~~~p~~~~~ 125 (126)
T TIGR02799 75 TTRVVELKGASLVFAQEVRR--GDTLLCEATV---EVACVDASDMRPRRLPAELRA 125 (126)
T ss_pred EEEEEecCceEEEEEEEEEe--CCEEEEEEEE---EEEEEECCCCcCcCCCHHHhh
Confidence 99999999999999999994 7999999999 999999999999999999875
No 6
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.89 E-value=1.7e-22 Score=169.91 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=106.4
Q ss_pred EEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEE
Q 015302 106 TVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWV 185 (409)
Q Consensus 106 ~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv 185 (409)
+++||++|||++||+++..|++|||+|+..|+.. .|++.. .+.+.|++|++++++++|++||++||.|+|+||+
T Consensus 1 ~~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~-----~g~~~~-~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~ 74 (117)
T TIGR00051 1 PVRVYYEDTDAQGIVYHANYLRYCERARTEFLRS-----LGFPQS-VLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQI 74 (117)
T ss_pred CEEEEEeccCCCcEEEehHHHHHHHHHHHHHHHH-----cCCCHH-HHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEE
Confidence 3689999999999999999999999999999862 366543 6778899999999999999999999999999999
Q ss_pred eeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceecCC
Q 015302 186 GASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIP 232 (409)
Q Consensus 186 ~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~riP 232 (409)
...|+.++.+.|+|++ .+|++++.+.+ +||+||.++|||++||
T Consensus 75 ~~~~~~s~~~~~~i~~-~~~~~~~~~~~---~~v~~d~~~~r~~~ip 117 (117)
T TIGR00051 75 EELNGFSFVFSQEIFN-EDEALLKAATV---IVVCVDPKKQKPVAIP 117 (117)
T ss_pred EecCcEEEEEEEEEEe-CCCcEEEeeEE---EEEEEECCCCeEcCCC
Confidence 9999999999999997 57788888888 8999999999999987
No 7
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=173.18 Aligned_cols=131 Identities=17% Similarity=0.281 Sum_probs=120.6
Q ss_pred ceeEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEE
Q 015302 100 GVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVV 179 (409)
Q Consensus 100 g~~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V 179 (409)
+..|..+++|||+|+|++|||++++|+.|||+|+..+++. .|+... .|.+.|+.|+|++++|+|++|.++||.+
T Consensus 3 ~~~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~-----~g~~~~-~~~~~~~~~~v~~~~i~y~~p~~~~d~l 76 (137)
T COG0824 3 SFPFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRA-----LGFDYA-DLEEGGIAFVVVEAEIDYLRPARLGDVL 76 (137)
T ss_pred CcceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHH-----cCCCHH-HHhhCCcEEEEEEEEeEECCCccCCCEE
Confidence 4578999999999999999999999999999999999862 377764 6777799999999999999999999999
Q ss_pred EEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceecCCHHHHHhcCc
Q 015302 180 EIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISP 241 (409)
Q Consensus 180 ~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~riPeevre~i~p 241 (409)
+|+||+...|+.++...|+|++ .++++++|.+ ++|++|.+++||+++|+++++.+..
T Consensus 77 ~v~~~v~~~~~~s~~~~~~i~~--~~~l~a~~~~---~~V~v~~~~~kp~~~P~~~~~~l~~ 133 (137)
T COG0824 77 TVRTRVEELGGKSLTLGYEIVN--EDELLATGET---TLVCVDLKTGKPVPLPPELREALEA 133 (137)
T ss_pred EEEEEEEeecCeEEEEEEEEEe--CCEEEEEEEE---EEEEEECCCCCcccCCHHHHHHHHH
Confidence 9999999999999999999996 3499999999 9999999999999999999987754
No 8
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.80 E-value=9.9e-19 Score=184.22 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=118.2
Q ss_pred eeEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEE
Q 015302 101 VGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVE 180 (409)
Q Consensus 101 ~~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~ 180 (409)
.++..+++|+++|||++|||++..|++|||+++..|+.. .|++.. ....+.+|++++.+|+|.+|+++||.|+
T Consensus 344 ~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~-----~G~~~~--~~~~~~~~vvv~~~i~y~rp~~~gD~v~ 416 (495)
T PRK07531 344 PLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRL-----IGVDAA--YVAAGHSYYTVETHIRHLGEAKAGQALH 416 (495)
T ss_pred ceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHH-----cCCCHH--HHhcCCcEEEEEEEEEEcccCCCCCEEE
Confidence 345789999999999999999999999999999999862 366642 3345899999999999999999999999
Q ss_pred EEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceecCCHHHHHhcCcc
Q 015302 181 IDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPW 242 (409)
Q Consensus 181 I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~riPeevre~i~p~ 242 (409)
|+||+...++.++.+.|+|++ .+|+++++|.+ +||++|.++|||+++|+++++.+..+
T Consensus 417 I~t~v~~~~~~s~~~~~~i~~-~~g~l~A~g~~---~~v~vD~~trr~~~iP~e~r~~l~~~ 474 (495)
T PRK07531 417 VETQLLSGDEKRLHLFHTLYD-AGGELIATAEH---MLLHVDLKAGKAVPAPAAVLAALKPI 474 (495)
T ss_pred EEEEEEecCCcEEEEEEEEEC-CCCcEEEEEEE---EEEEEECCCCccCCCCHHHHHHHHHH
Confidence 999999999999999999997 68999999999 99999999999999999999887543
No 9
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.79 E-value=3.3e-18 Score=145.75 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=97.4
Q ss_pred eeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeee
Q 015302 109 VRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGAS 188 (409)
Q Consensus 109 VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~ 188 (409)
||++||| +||++++.|++||++|+..++.. .|+ . ..+...|+++++++.+|+|.+|..+||.++|++++...
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~-----~g~-~-~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~ 72 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEE-----LGL-Y-DELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEI 72 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHH-----HTS-C-HHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHh-----cch-h-hHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEE
Confidence 7899999 99999999999999999999852 255 3 36788899999999999999999999999999999999
Q ss_pred CCceEEEEEEEEEcCCCcE--EEEEEEccEEEEEEEcCCCceecCCHHHHHhc
Q 015302 189 GKNGMRRDWLIRSQATGHI--FARATRYIITWVMMNQQTRRLSKIPAEVRAEI 239 (409)
Q Consensus 189 gr~~~~Rdf~I~d~~~Gev--iarAtS~~~~WV~mD~~tRRp~riPeevre~i 239 (409)
++.++...+.|++..+|+. +|+|.+ ++|++|.++ |+.++|+++++.|
T Consensus 73 ~~~s~~~~~~i~~~~~g~~~~~a~~~~---~~v~~d~~~-r~~~~P~~~~~~l 121 (121)
T PF13279_consen 73 GGKSFRFEQEIFRPADGKGELAATGRT---VMVFVDYKT-RSVPIPDELREAL 121 (121)
T ss_dssp ESSEEEEEEEEEECSTTEEEEEEEEEE---EEEEEETTT-CE-B--HHHHHHH
T ss_pred CCcEEEEEEEEEEcCCCceEEEEEEEE---EEEEEeCCC-CcCCCCHHHHhcC
Confidence 9999999999997445655 999999 999999999 6999999998754
No 10
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.68 E-value=9.2e-16 Score=124.93 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=99.1
Q ss_pred EEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 015302 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (409)
Q Consensus 103 y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~ 182 (409)
|+.++.|+++|+|.+||+++..|++|+++++..|+.. .|++.. .+.+.+..|++.+.+++|.+|+.+||+|+|+
T Consensus 1 ~~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~ 74 (110)
T cd00586 1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRE-----LGLGYD-ELEEQGLGLVVVELEIDYLRPLRLGDRLTVE 74 (110)
T ss_pred CcEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHH-----cCCCHH-HHHhCCceEEEEEeEeeEcCccCCCCEEEEE
Confidence 5678999999999999999999999999999999863 244432 4567899999999999999999999999999
Q ss_pred EEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEE
Q 015302 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMN 222 (409)
Q Consensus 183 Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD 222 (409)
+|+.+.++..+.+.+.+++ .+|+++++|.+ .|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~~g~~~a~~~~---~~~~~d 110 (110)
T cd00586 75 TRVLRLGRKSFTFEQEIFR-EDGELLATAET---VLVCVD 110 (110)
T ss_pred EEEEecCcEEEEEEEEEEC-CCCeEEEEEEE---EEEEeC
Confidence 9999999999999999997 47999999999 999987
No 11
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.26 E-value=2.1e-11 Score=105.67 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=70.9
Q ss_pred cceeeccccCccCCccchHHHHHHHHHhC-------Ccc---hh---cccceEEEEEEEecccCCCCeEEEEEEEcCCce
Q 015302 269 SDLKPKRSDLDMNHHVNNVKYVRWMLETI-------PDR---IL---ESNQLSGITLEYRRECGGSDVVQSLCQPDEDGI 335 (409)
Q Consensus 269 ~~~~vr~sDlD~NgHVNN~~Yl~w~~eal-------p~~---~~---~~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~~~ 335 (409)
.+++|||+|+|.+|||||+.|++|++++. +.. .. -...+.+.+++|++|+++||.|.+.+++..-+-
T Consensus 5 ~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~ 84 (130)
T PRK10800 5 WPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMRG 84 (130)
T ss_pred EEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCc
Confidence 46899999999999999999999999983 211 11 124578999999999999999999999876421
Q ss_pred eeeceeccccceeeccCcccceeeecCCCcccccCCCceEEEEEEEecCCCCcceEEEeEeeee
Q 015302 336 LKDGVKQDTASIRLLNGFSLASEIVDGGGLIASFEKGPLRFTHLLQAKGETQNEEIVRGRTTWK 399 (409)
Q Consensus 336 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~hllr~~~~~~~~ei~rgrT~W~ 399 (409)
..+.+.|-++-.++ ..+.+|++.|.
T Consensus 85 ------------------------------------~s~~~~~~i~~~~g---~~~a~~~~~~v 109 (130)
T PRK10800 85 ------------------------------------TSLTFTQRIVNAEG---TLLNEAEVLIV 109 (130)
T ss_pred ------------------------------------EEEEEEEEEEcCCC---eEEEEEEEEEE
Confidence 12456665554443 78999999996
No 12
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.24 E-value=3.1e-11 Score=106.85 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=54.5
Q ss_pred cceeeccccCccCCccchHHHHHHHHHhC-------Ccc---hhc---ccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 269 SDLKPKRSDLDMNHHVNNVKYVRWMLETI-------PDR---ILE---SNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 269 ~~~~vr~sDlD~NgHVNN~~Yl~w~~eal-------p~~---~~~---~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
.+++|||+|+|.+|||||++|+.|++++. +.+ ..+ ...+.+++|+|++|+++||.+.+.+++.+-
T Consensus 8 ~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~ 85 (137)
T COG0824 8 TPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEEL 85 (137)
T ss_pred EEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEee
Confidence 57899999999999999999999999983 111 111 146899999999999999999999998763
No 13
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.22 E-value=6.2e-11 Score=99.46 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=53.4
Q ss_pred ceeeccccCccCCccchHHHHHHHHHhC---------Ccchhc----ccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 270 DLKPKRSDLDMNHHVNNVKYVRWMLETI---------PDRILE----SNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 270 ~~~vr~sDlD~NgHVNN~~Yl~w~~eal---------p~~~~~----~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
+++|||+|+|.||||||+.|+.|++++. +...+. ...+.+++++|++|+++||.|.+.+++..-
T Consensus 1 ~~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~ 77 (117)
T TIGR00051 1 PVRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEEL 77 (117)
T ss_pred CEEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEec
Confidence 3689999999999999999999999983 221112 136889999999999999999999998763
No 14
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.20 E-value=9e-10 Score=93.02 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=93.8
Q ss_pred eeEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEe-EEEEeecCCCCCEE
Q 015302 101 VGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM-QVEIDHYPIWGEVV 179 (409)
Q Consensus 101 ~~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~-~Ie~~r~p~~gD~V 179 (409)
-.+...+.|++.++|+.|+++...|+.++++++..++.. + . +..+++... +++|.+|..+||.|
T Consensus 6 ~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~-------~------~--~~~~~~~~~~~~~f~~p~~~gd~l 70 (123)
T cd03442 6 TELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYR-------H------A--GGRVVTASVDRIDFLKPVRVGDVV 70 (123)
T ss_pred cceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHH-------H------h--CCcEEEEEECceEEcCccccCcEE
Confidence 356789999999999999999999999999998766420 1 1 112334444 79999999999999
Q ss_pred EEEEEEeeeCCceEEEEEEEEEcC----CCcEEEEEEEccEEEEEEEcCCCceecCC
Q 015302 180 EIDTWVGASGKNGMRRDWLIRSQA----TGHIFARATRYIITWVMMNQQTRRLSKIP 232 (409)
Q Consensus 180 ~I~Twv~~~gr~~~~Rdf~I~d~~----~GeviarAtS~~~~WV~mD~~tRRp~riP 232 (409)
.+++|+...|+..+..++.+++.. +++++++|.. ++|++| .++||.++|
T Consensus 71 ~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~~~---~~v~~~-~~~~~~~~p 123 (123)
T cd03442 71 ELSARVVYTGRTSMEVGVEVEAEDPLTGERRLVTSAYF---TFVALD-EDGKPRPVP 123 (123)
T ss_pred EEEEEEEEecCCeEEEEEEEEEecCCCCcEEEEEEEEE---EEEEEC-CCCCeeeCC
Confidence 999999999999999999998743 3579999999 999999 468999887
No 15
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.19 E-value=1.1e-10 Score=99.86 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=53.5
Q ss_pred cceeeccccCccCCccchHHHHHHHHHhC---------Cc-chh-c---ccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 269 SDLKPKRSDLDMNHHVNNVKYVRWMLETI---------PD-RIL-E---SNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 269 ~~~~vr~sDlD~NgHVNN~~Yl~w~~eal---------p~-~~~-~---~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
..++|||+|+|.+|||||+.|+.|++++. +. ++. + ...+.+.+|+|++|+++||.|.+.+++.+-
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~ 81 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVEL 81 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEec
Confidence 35899999999999999999999998762 22 121 1 136789999999999999999999998763
No 16
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.16 E-value=1.2e-10 Score=99.05 Aligned_cols=58 Identities=28% Similarity=0.400 Sum_probs=42.2
Q ss_pred eccccCccCCccchHHHHHHHHHhCCcchh---------c----ccceEEEEEEEecccCCCCeEEEEEEEcC
Q 015302 273 PKRSDLDMNHHVNNVKYVRWMLETIPDRIL---------E----SNQLSGITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 273 vr~sDlD~NgHVNN~~Yl~w~~ealp~~~~---------~----~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
|||+|+| +|||||+.|+.|++++.- +++ . ...+.+.+|+|++|+.+||.+.+.+++.+
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~-~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~ 71 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEARE-EFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEE 71 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHH-HHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHH-HHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEE
Confidence 7999999 999999999999999831 222 1 23578999999999999999999998854
No 17
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=98.87 E-value=1.4e-08 Score=82.32 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=54.4
Q ss_pred cceeeccccCccCCccchHHHHHHHHHhCCcch-------------hcccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 269 SDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRI-------------LESNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 269 ~~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~~~-------------~~~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
..+.|+++|+|.+||+||..|++|++++....+ ...+.+.+..++|++|+..||.|.+.+++...
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~ 80 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRL 80 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEec
Confidence 357899999999999999999999999864211 11346789999999999999999999998653
No 18
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.83 E-value=1.7e-07 Score=71.12 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=85.0
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~T 183 (409)
...+.++++++|.+++++...++.++++++..++.. ++ ..+..+++.++.++|.+|+..||.|.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~g~~v~~~~ 68 (100)
T cd03440 2 VLRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAAR-------LG------GRGLGAVTLSLDVRFLRPVRPGDTLTVEA 68 (100)
T ss_pred EEEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHH-------hc------cCCCeEEEEEEEeEEecCCCCCCEEEEEE
Confidence 457899999999999999999999999999998741 11 15789999999999999999999999999
Q ss_pred EEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 184 WVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 184 wv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
++...++..+.....+.+ .+|++++.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 97 (100)
T cd03440 69 EVVRVGRSSVTVEVEVRN-EDGKLVATATA 97 (100)
T ss_pred EEEeccccEEEEEEEEEC-CCCCEEEEEEE
Confidence 999999988888888886 47999999987
No 19
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.69 E-value=7.3e-08 Score=102.10 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=54.7
Q ss_pred ccceeeccccCccCCccchHHHHHHHHHhC---------Ccchhc---ccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 268 NSDLKPKRSDLDMNHHVNNVKYVRWMLETI---------PDRILE---SNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 268 ~~~~~vr~sDlD~NgHVNN~~Yl~w~~eal---------p~~~~~---~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
..+++|++.|+|.||||||++|++|++++. +..... ...+.+.+|+|++|.++||.|.+.+++.+.
T Consensus 347 ~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~ 424 (495)
T PRK07531 347 LVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSG 424 (495)
T ss_pred EEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEec
Confidence 347889999999999999999999999873 211111 346799999999999999999999998764
No 20
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.63 E-value=9.2e-07 Score=68.83 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=68.5
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEE
Q 015302 117 DKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRD 196 (409)
Q Consensus 117 ~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rd 196 (409)
+|+++...|+.|+++|+..++... + ..+...++...+++|.+|...||.|++++|+...|+.++..+
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~-----~--------~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~ 67 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSH-----G--------GDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVE 67 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHH-----H--------SSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHh-----c--------cCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEE
Confidence 589999999999999999887521 1 116899999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEE
Q 015302 197 WLIRSQATGHIFA 209 (409)
Q Consensus 197 f~I~d~~~Gevia 209 (409)
+++++ ++++++|
T Consensus 68 ~~v~~-~~~~~~~ 79 (79)
T PF03061_consen 68 VEVYS-EDGRLCA 79 (79)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEE-CCCcEEC
Confidence 99997 6777765
No 21
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=98.48 E-value=7e-07 Score=87.02 Aligned_cols=129 Identities=15% Similarity=0.206 Sum_probs=81.9
Q ss_pred hhccccccchhhccccC-CCcccccccc--------------cccc---cccCceeEEEEEEeeecccCCCCCcCHHHHH
Q 015302 65 AEKEGCRINEVQIRQNI-PTKKQFVDPY--------------RHGL---IIEGGVGYRQTVVVRSYEVGPDKTATLESIL 126 (409)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~--------------~~g~---~~~~g~~y~~~~~VR~~EvD~~g~v~~~~~l 126 (409)
|.+.|..+|-+.+|+.- |. .+.+.+ +.-+ .......+..+++||++|+|.||||||..|+
T Consensus 112 a~s~WvliD~~trr~~ri~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~sDiD~N~HVNN~~Yl 189 (261)
T PF01643_consen 112 ATSIWVLIDLETRRPVRIPE--EIIEEYGPFFPDELPEEDIRKLPKIPKNPPEEPEFEKEFTVRYSDIDMNGHVNNARYL 189 (261)
T ss_dssp EEEEEEEEETTT-SEE---G--GCTCCGGGGB----T-EESSS----------TTSECEEEE--GGGEETTTCE-HHHHH
T ss_pred EEEEEEEEEhhhCCcccCCH--HHHhhhhhhcccccccccccccccccccCChhhheeecccccHHHCCCCCCcCHHHHH
Confidence 34588888888777652 32 222222 1111 1234567889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeeeC-CceEEEEEEEEEcCCC
Q 015302 127 NLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASG-KNGMRRDWLIRSQATG 205 (409)
Q Consensus 127 ~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~g-r~~~~Rdf~I~d~~~G 205 (409)
+|+.|+--. ++.+ ...+.++.|.|.+...+||.|.+.+.+.... .....-...|++ .+|
T Consensus 190 ~w~~d~lp~----------------~~~~---~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~~~~~h~i~~-~~g 249 (261)
T PF01643_consen 190 DWALDALPE----------------EFLE---KYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDGLSTLHEIRN-EDG 249 (261)
T ss_dssp HHHHCCS-H----------------HHHC---CEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTEEEEEEEEEC-T-T
T ss_pred HHHHHhCcc----------------hhhc---cCCcEEEEEEEccccCCCCEEEEEEEEcccccCCceEEEEEEEc-CCC
Confidence 999995211 1211 3457899999999999999999999875443 334455667886 559
Q ss_pred cEEEEEEEccEEE
Q 015302 206 HIFARATRYIITW 218 (409)
Q Consensus 206 eviarAtS~~~~W 218 (409)
+.+++|.+ .|
T Consensus 250 ~~~~~~~~---~W 259 (261)
T PF01643_consen 250 EEVARART---EW 259 (261)
T ss_dssp CEEEEEEE---EE
T ss_pred ceEEEEEE---EE
Confidence 99999999 88
No 22
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.43 E-value=8.9e-06 Score=67.59 Aligned_cols=100 Identities=13% Similarity=0.041 Sum_probs=86.0
Q ss_pred eEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEE
Q 015302 102 GYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (409)
Q Consensus 102 ~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I 181 (409)
..+..+++...++|..|.++...++.+++.++...+.. ....+...++.+++++|.+|+.. +.|.+
T Consensus 13 ~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~-------------~~~~~~~~~~~~~~i~f~~p~~~-~~v~~ 78 (113)
T cd03443 13 RVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALS-------------ALPPGALAVTVDLNVNYLRPARG-GDLTA 78 (113)
T ss_pred eEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhh-------------ccCCCCceEEEEEEEeEEcCCCC-CeEEE
Confidence 56788899999999999999999999999998766531 01135678889999999999999 99999
Q ss_pred EEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEE
Q 015302 182 DTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWV 219 (409)
Q Consensus 182 ~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV 219 (409)
++++.+.++..+.-+..+++ ++|+++++|+. +|+
T Consensus 79 ~~~v~~~g~~~~~~~~~~~~-~~~~~~a~a~~---~~~ 112 (113)
T cd03443 79 RARVVKLGRRLAVVEVEVTD-EDGKLVATARG---TFA 112 (113)
T ss_pred EEEEEecCceEEEEEEEEEC-CCCCEEEEEEE---EEe
Confidence 99999999998888899986 56999999999 875
No 23
>PLN02370 acyl-ACP thioesterase
Probab=98.22 E-value=6.1e-06 Score=85.74 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=85.8
Q ss_pred hhhccccccchhhcccc-CCCc-cccccccc----------ccccc--cCc--eeEEEEEEeeecccCCCCCcCHHHHHH
Q 015302 64 AAEKEGCRINEVQIRQN-IPTK-KQFVDPYR----------HGLII--EGG--VGYRQTVVVRSYEVGPDKTATLESILN 127 (409)
Q Consensus 64 ~~~~~~~~~~~~~~~~~-~~~~-~~~~d~~~----------~g~~~--~~g--~~y~~~~~VR~~EvD~~g~v~~~~~l~ 127 (409)
.|++.|..+|-+.+|.. +|.+ ...+++|. ..++- ++. ...+..++||++|+|.||||||..|++
T Consensus 247 ~A~SvWV~mD~~TRRpvRIP~Evr~~i~~y~~~~~~~i~~~~~kl~~l~~~~~~~~~~~~~VRysDLD~NgHVNNvkYi~ 326 (419)
T PLN02370 247 RASSVWVMMNKLTRRLSKIPEEVRGEIEPYFLNSDPVVNEDSRKLPKLDDKTADYIRKGLTPRWSDLDVNQHVNNVKYIG 326 (419)
T ss_pred EEEEEEEEEECCCCcccCCCHHHHHhhhhcccccccccccccccCCccccccccceeeeeeecHHHCcccCccccHHHHH
Confidence 34568888887777765 4433 11133332 22221 111 123456999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeee--CC---ce-EEEEEEEEE
Q 015302 128 LFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGAS--GK---NG-MRRDWLIRS 201 (409)
Q Consensus 128 ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~--gr---~~-~~Rdf~I~d 201 (409)
|+.|+.-. ++.+ ...+.++.|+|.+...+||.|.+.+..... +. .. ......+.
T Consensus 327 Wild~lP~----------------e~l~---~~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~~~~~h~~~- 386 (419)
T PLN02370 327 WILESAPP----------------PIME---SHELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGDVECQHLLR- 386 (419)
T ss_pred HHHhhCch----------------hhhh---cceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCCcceEEEEEE-
Confidence 99995211 1112 224788999999999999999988775321 11 11 11122334
Q ss_pred cCCCcEEEEEEEccEEEE
Q 015302 202 QATGHIFARATRYIITWV 219 (409)
Q Consensus 202 ~~~GeviarAtS~~~~WV 219 (409)
.++|+.+++|.+ .|-
T Consensus 387 ~~dG~e~a~a~t---~Wr 401 (419)
T PLN02370 387 LEDGAEIVRGRT---EWR 401 (419)
T ss_pred cCCCeEEEEEEE---EEE
Confidence 379999999999 884
No 24
>PRK10694 acyl-CoA esterase; Provisional
Probab=98.01 E-value=0.00024 Score=62.87 Aligned_cols=111 Identities=10% Similarity=0.036 Sum_probs=86.9
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEe-EEEEeecCCCCCEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM-QVEIDHYPIWGEVVEID 182 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~-~Ie~~r~p~~gD~V~I~ 182 (409)
...+.+...+++..|.+.=..+|.|+.+++.-.+. .. .+-.++.+++ .|+|.+|.+.||.|++.
T Consensus 13 ~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~-------------~~--~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~ 77 (133)
T PRK10694 13 VLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAK-------------EI--AHGRVVTVRVEGMTFLRPVAVGDVVCCY 77 (133)
T ss_pred EEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHH-------------HH--cCCceEEEEECceEECCCcccCcEEEEE
Confidence 45568999999999999999999999998766542 11 1234677777 77999999999999999
Q ss_pred EEEeeeCCceEEEEEEEEEc-----CCCc--EEEEEEEccEEEEEEEcCCCceecCCH
Q 015302 183 TWVGASGKNGMRRDWLIRSQ-----ATGH--IFARATRYIITWVMMNQQTRRLSKIPA 233 (409)
Q Consensus 183 Twv~~~gr~~~~Rdf~I~d~-----~~Ge--viarAtS~~~~WV~mD~~tRRp~riPe 233 (409)
+++...|+.++....+++.. ..|+ .++.|.. ++|.+| +.+||.++|+
T Consensus 78 a~V~~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~---tfVavd-~~g~p~~vp~ 131 (133)
T PRK10694 78 ARCVKTGTTSISINIEVWVKKVASEPIGQRYKATEALF---TYVAVD-PEGKPRALPV 131 (133)
T ss_pred EEEEEccCceEEEEEEEEEeecccCCCCcEEEEEEEEE---EEEEEC-CCCCEEeCCC
Confidence 99999999999877777631 1133 3556666 888998 5789999885
No 25
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=97.88 E-value=0.00012 Score=55.13 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=54.1
Q ss_pred ceeeccccCccCCccchHHHHHHHHHhCCcchhc------ccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 270 DLKPKRSDLDMNHHVNNVKYVRWMLETIPDRILE------SNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 270 ~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~~~~~------~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
...+++.|+|.++|+|+..|+.|++++....+.. ...+.++.+.|+++...||.|.+.+++.+.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ 73 (100)
T cd03440 4 RLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRV 73 (100)
T ss_pred EEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEec
Confidence 4689999999999999999999999986433221 346789999999999999999999998764
No 26
>PF12590 Acyl-thio_N: Acyl-ATP thioesterase; InterPro: IPR021113 This entry represents the N-terminal domain of acyl-ATP thioesterases from bacteria and eukaryotes. These proteins are typically between 120 and 131 amino acids in length. The plant acyl-acyl carrier protein (ACP) thioesterases (TEs) play an essential role in chain termination during de novo fatty acid synthesis [].; GO: 0016790 thiolester hydrolase activity
Probab=97.83 E-value=2.3e-06 Score=73.98 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=29.3
Q ss_pred cccccceeeeehhhhhhccccccchhhccccCCCcccccc
Q 015302 50 SQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVD 89 (409)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 89 (409)
||.+.++||||. |||||||+|||+++|+ ++|+|
T Consensus 97 SMLLAAITTIFl--AAEKQW~mLDwKpkRP-----DML~D 129 (129)
T PF12590_consen 97 SMLLAAITTIFL--AAEKQWTMLDWKPKRP-----DMLVD 129 (129)
T ss_pred HHHHHHHHHHHH--HhhhhhhhhcccCCCc-----ccccC
Confidence 678899999998 9999999999999998 56665
No 27
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=97.74 E-value=0.00024 Score=59.73 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=51.9
Q ss_pred ccceeeccccCccCCccchHHHHHHHHHhCCcchh---c-ccceEEE-EEEEecccCCCCeEEEEEEEcCC
Q 015302 268 NSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRIL---E-SNQLSGI-TLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 268 ~~~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~~~~---~-~~~l~~i-~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
...+.|++.|+|..||||+..|+.|+.++...-.. . ......+ +++|++|+..||.|.+.+++...
T Consensus 9 ~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~ 79 (123)
T cd03442 9 STRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYT 79 (123)
T ss_pred EEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEe
Confidence 35789999999999999999999999998422111 1 1234466 79999999999999999987653
No 28
>PLN02647 acyl-CoA thioesterase
Probab=97.57 E-value=0.0048 Score=64.83 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=132.1
Q ss_pred EeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEE-eEEEEeecCCCCCEEEEEEEEe
Q 015302 108 VVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSR-MQVEIDHYPIWGEVVEIDTWVG 186 (409)
Q Consensus 108 ~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r-~~Ie~~r~p~~gD~V~I~Twv~ 186 (409)
.+|-.+++..|++....+|.+|.++|..-+.-. .. +. ......+..|.+. -.|++.+|+..|+.|+|...+.
T Consensus 99 ~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh-~~--~~----~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt 171 (437)
T PLN02647 99 ILREQYRNPWNEVRIGKLLEDLDALAGTISVKH-CS--DD----DSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVT 171 (437)
T ss_pred hhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHH-hC--CC----cccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEE
Confidence 667777999999999999999999876654210 00 10 0111223344444 4688999999999999999999
Q ss_pred eeCCceEEEEEEEEEcC------CCcEEEEEEEccEEEEEEEcCCCceecCCHHH------HHhcCccccc---ccccc-
Q 015302 187 ASGKNGMRRDWLIRSQA------TGHIFARATRYIITWVMMNQQTRRLSKIPAEV------RAEISPWFID---KQAII- 250 (409)
Q Consensus 187 ~~gr~~~~Rdf~I~d~~------~GeviarAtS~~~~WV~mD~~tRRp~riPeev------re~i~p~~~~---~~~~~- 250 (409)
..|+.+|...-.+.... ....++.|.. ++|-+|.+++||.++|+-. +..+...... ++...
T Consensus 172 ~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~F---tfVA~D~~~gkp~pVp~l~pete~Ek~~~e~a~~R~~~Rk~~r~ 248 (437)
T PLN02647 172 WVGRSSMEIQLEVIQPTKDESNTSDSVALTANF---TFVARDSKTGKSAPVNRLSPETEEEKLLFEEAEARNKLRKKKRG 248 (437)
T ss_pred EecCCeEEEEEEEEEccccCCCCcEEEEEEEEE---EEEEEcCCCCCeeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998766666311 2235788888 9999998789999886422 1111100000 00000
Q ss_pred c----cCc----------------ccccCC-Ccc-----ccccccceeeccccCccCCccchHHHHHHHHHhCCc--chh
Q 015302 251 E----DVP----------------EKISKL-DDT-----AKYVNSDLKPKRSDLDMNHHVNNVKYVRWMLETIPD--RIL 302 (409)
Q Consensus 251 ~----~~~----------------~ki~kl-~~~-----~~~~~~~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~--~~~ 302 (409)
. ..+ ...+.+ +.. .......+.+...|...+|.+.=-.-+.|+.|.... ..+
T Consensus 249 ~~~~~~~~~e~~~l~~l~~~~~~~~~~p~l~~~~~v~m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~ 328 (437)
T PLN02647 249 EQKREFENGEAERLEALLAEGRVFCDMPALADRNSILIRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAF 328 (437)
T ss_pred hhcccCCchHHHHHHHHHHhccccccCcccCCccceeccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000001 000 001123345778888888888888888898886321 111
Q ss_pred cccc---eEEEEEEEecccCCCCeEEEEEEEc
Q 015302 303 ESNQ---LSGITLEYRRECGGSDVVQSLCQPD 331 (409)
Q Consensus 303 ~~~~---l~~i~I~Y~~E~~~gd~v~~~t~~~ 331 (409)
.... +.--.|+|++|+..||.|.+...+.
T Consensus 329 a~~~~vt~svd~v~F~~PV~vGdil~l~A~V~ 360 (437)
T PLN02647 329 AGLRPYFLEVDHVDFLRPVDVGDFLRFKSCVL 360 (437)
T ss_pred cCCceEEEEecceEecCccccCcEEEEEEEEE
Confidence 1222 3345689999999999999876554
No 29
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.41 E-value=0.0067 Score=51.50 Aligned_cols=98 Identities=13% Similarity=-0.023 Sum_probs=79.2
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~T 183 (409)
+-.+.++...++..|.+.=..++.+++.++.--+.. ....+...+...++|+|.+|+.-| .|+++.
T Consensus 19 ~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~-------------~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a 84 (117)
T TIGR00369 19 EATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYL-------------CNSGGQAVVGLELNANHLRPAREG-KVRAIA 84 (117)
T ss_pred EEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHh-------------hcCCCceEEEEEEEeeeccccCCC-EEEEEE
Confidence 677788888999999999999999988876332210 012234567779999999999999 999999
Q ss_pred EEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEE
Q 015302 184 WVGASGKNGMRRDWLIRSQATGHIFARATRYIITWV 219 (409)
Q Consensus 184 wv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV 219 (409)
++.+.|+..+.-+-+++| ++|+++|+|+. ++.
T Consensus 85 ~v~~~gr~~~~~~~~i~~-~~g~~va~~~~---t~~ 116 (117)
T TIGR00369 85 QVVHLGRQTGVAEIEIVD-EQGRLCALSRG---TTA 116 (117)
T ss_pred EEEecCceEEEEEEEEEC-CCCCEEEEEEE---EEc
Confidence 999999988887888887 68999999998 663
No 30
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=97.40 E-value=0.0064 Score=55.47 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=85.8
Q ss_pred EEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEE
Q 015302 105 QTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTW 184 (409)
Q Consensus 105 ~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Tw 184 (409)
....+-..|++++|.+.=..+|.||.++|.--+.. ...+..--+.==+|.+.+|.+.||.|.+.+|
T Consensus 16 ~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~--------------~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~ 81 (157)
T COG1607 16 LRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASR--------------HAGGRVVTASVDSVDFKKPVRVGDIVCLYAR 81 (157)
T ss_pred EEEEecCCccCcccccccHHHHHHHHHHHHHHHHH--------------HhCCeEEEEEeceEEEccccccCcEEEEEEE
Confidence 67788899999999999999999999998765420 1122222333357899999999999999999
Q ss_pred EeeeCCceEEEEEEEEE--cCCC--cEEEEEEEccEEEEEEEcCCCceecCCHHH
Q 015302 185 VGASGKNGMRRDWLIRS--QATG--HIFARATRYIITWVMMNQQTRRLSKIPAEV 235 (409)
Q Consensus 185 v~~~gr~~~~Rdf~I~d--~~~G--eviarAtS~~~~WV~mD~~tRRp~riPeev 235 (409)
+...|+.++...-+++. -.+| .....|.. ++|-+|-+ +||.++|++.
T Consensus 82 v~~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~f---t~VAvd~~-gkP~~vp~~~ 132 (157)
T COG1607 82 VVYTGRTSMEVGVEVWAEDIRSGERRLATSAYF---TFVAVDED-GKPTPVPREE 132 (157)
T ss_pred EeecCcccEEEEEEEEEecccCCcceEeeeEEE---EEEEECCC-CCcccCCccC
Confidence 99999999986666653 1222 23445555 99999976 9999999754
No 31
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=97.24 E-value=0.0011 Score=63.73 Aligned_cols=87 Identities=13% Similarity=-0.000 Sum_probs=66.4
Q ss_pred eeEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEE
Q 015302 101 VGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVE 180 (409)
Q Consensus 101 ~~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~ 180 (409)
..+...|.||++|+|.+|||||+.|+.|+.|.-..|+. . .---.|+.++|.++...||+|+
T Consensus 151 ~s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~----~---------------~~~p~r~~l~y~keva~G~~it 211 (250)
T COG3884 151 ASEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFL----K---------------LYGPLRLTLEYVKEVAPGEKIT 211 (250)
T ss_pred ccccccceeEEEeeccccccccceehHHHHHHHhhhhH----h---------------hcccceeEEEEEcccCCCCeEE
Confidence 35677999999999999999999999999997665542 0 0113578999999999999999
Q ss_pred EEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 181 IDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 181 I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
|.+.....+..- .+. .+|++.+.+-.
T Consensus 212 i~~e~~~~~s~~------~f~-~d~~v~~lt~i 237 (250)
T COG3884 212 IVYEVHPLESKH------QFT-SDGQVNALTYI 237 (250)
T ss_pred EEEEEcccCcee------eec-CCcceEEEEEE
Confidence 999987665432 112 36777666665
No 32
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.21 E-value=0.018 Score=48.74 Aligned_cols=97 Identities=16% Similarity=0.053 Sum_probs=78.4
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~T 183 (409)
.-.+.++-..++..|.++=..++-++..++...+. . . +..-+....+++|.+|..-||.|.++.
T Consensus 17 ~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~-----~--~---------~~~~~t~~~~i~f~rp~~~G~~l~~~a 80 (114)
T TIGR02286 17 RVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACN-----S--Y---------GDAAVAAQCTIDFLRPGRAGERLEAEA 80 (114)
T ss_pred EEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhc-----C--C---------CCceEEEEEEEEEecCCCCCCEEEEEE
Confidence 34788888899999999999999999998643321 0 0 111245778999999999999999999
Q ss_pred EEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEE
Q 015302 184 WVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVM 220 (409)
Q Consensus 184 wv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~ 220 (409)
++...|+.....+-+|++ ++|+++|.++. +|-.
T Consensus 81 ~v~~~g~~~~~~~~~i~~-~~~~~va~~~~---t~~~ 113 (114)
T TIGR02286 81 VEVSRGGRTGTYDVEVVN-QEGELVALFRG---TSRR 113 (114)
T ss_pred EEEEeCCcEEEEEEEEEc-CCCCEEEEEEE---EEEE
Confidence 999999887777788887 78999999999 8854
No 33
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=97.15 E-value=0.0007 Score=52.42 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=41.9
Q ss_pred CCccchHHHHHHHHHhCCcch---h---cccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 281 NHHVNNVKYVRWMLETIPDRI---L---ESNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 281 NgHVNN~~Yl~w~~ealp~~~---~---~~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
||||||..|+.|++++...-+ . ....+.+++++|++|++.||.+.+.+++...
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~ 59 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRV 59 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEE
Confidence 799999999999999853211 1 1246789999999999999999999987653
No 34
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=96.27 E-value=0.04 Score=45.43 Aligned_cols=65 Identities=9% Similarity=-0.061 Sum_probs=52.3
Q ss_pred ccceeeccccCccCCccchHHHHHHHHHhCCcch------hcccceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 268 NSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRI------LESNQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 268 ~~~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~~~------~~~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
.-.+++.+.+.|..|++++..|..|++.+...-. .....+.+++++|++|+.. +.|.+.+++...
T Consensus 15 ~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~ 85 (113)
T cd03443 15 VLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARVVKL 85 (113)
T ss_pred EEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEec
Confidence 4468888999999999999999999999864211 1223578999999999999 999998887653
No 35
>PRK10293 acyl-CoA esterase; Provisional
Probab=96.25 E-value=0.21 Score=44.34 Aligned_cols=100 Identities=12% Similarity=-0.084 Sum_probs=80.7
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~T 183 (409)
+-.+.|+-..+.+.|.++=..++.+++.++...+. . ....+...+-..+++.|.+|.+-| .|..+-
T Consensus 37 ~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~---------~----~~~~~~~~vTiel~infl~p~~~g-~l~a~a 102 (136)
T PRK10293 37 EATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGY---------L----CTEGEQKVVGLEINANHVRSAREG-RVRGVC 102 (136)
T ss_pred EEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHH---------h----cccCCceEEEEEEEeEEecccCCc-eEEEEE
Confidence 56777888889999999999999999776543221 0 112355678889999999999876 699999
Q ss_pred EEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEE
Q 015302 184 WVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMM 221 (409)
Q Consensus 184 wv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~m 221 (409)
++.+.||.-+.-+-+|+| ++|++++.++. +|.++
T Consensus 103 ~vv~~Gr~~~~~~~~v~d-~~g~l~A~~~~---t~~i~ 136 (136)
T PRK10293 103 KPLHLGSRHQVWQIEIFD-EKGRLCCSSRL---TTAIL 136 (136)
T ss_pred EEEecCCCEEEEEEEEEe-CCCCEEEEEEE---EEEEC
Confidence 999999998888889998 79999999999 88763
No 36
>PRK11688 hypothetical protein; Provisional
Probab=96.09 E-value=0.22 Score=44.71 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=76.5
Q ss_pred EEEEEeeecccC--CCCCcCHHHHHHHHHHHHHHHHHhhccccCCC-Ccch-hhccCCeEEEEEEeEEEEeecCCCCCEE
Q 015302 104 RQTVVVRSYEVG--PDKTATLESILNLFQETALNHVWMSGLLSNGF-GATH-GMMRNNLIWVVSRMQVEIDHYPIWGEVV 179 (409)
Q Consensus 104 ~~~~~VR~~EvD--~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gf-g~~~-~m~~~gl~WVV~r~~Ie~~r~p~~gD~V 179 (409)
+..+.++-..++ +.|.++=..++.++..+...-+... .. .+. +..+ ........-+-..++++|.+|.+ |+.|
T Consensus 40 ~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~-~~-~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l 116 (154)
T PRK11688 40 ELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGG-IL-ARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERF 116 (154)
T ss_pred EEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhh-cc-cccccccccccccccccceEEEEEEEeeccCC-CCeE
Confidence 456677777785 5789998888888877665443211 00 000 0000 00011223457799999999996 9999
Q ss_pred EEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEE
Q 015302 180 EIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVM 220 (409)
Q Consensus 180 ~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~ 220 (409)
+++.++.+.|+.-+..+-+|++ ++|+++|+|+. +|..
T Consensus 117 ~a~a~v~~~g~r~~~~~~~i~~-~~g~lvA~a~~---t~~v 153 (154)
T PRK11688 117 TATSSVLRAGNKVAVARMELHN-EQGVHIASGTA---TYLV 153 (154)
T ss_pred EEEEEEEEccCCEEEEEEEEEC-CCCCEEEEEEE---EEEe
Confidence 9999999999887777778887 68999999999 8763
No 37
>COG5496 Predicted thioesterase [General function prediction only]
Probab=95.95 E-value=0.36 Score=42.54 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=82.4
Q ss_pred cCceeEEEEEEeeecccCCC-------CCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEe
Q 015302 98 EGGVGYRQTVVVRSYEVGPD-------KTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEID 170 (409)
Q Consensus 98 ~~g~~y~~~~~VR~~EvD~~-------g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~ 170 (409)
.+|+.|+.++.|+--.+++- ..+.-..++-||++|+...+. + ...+|.+-|-+...++-.
T Consensus 2 ~~g~~~e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~------------~-~Ld~g~ttVG~ev~vrHl 68 (130)
T COG5496 2 MDGLTLEGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQ------------P-YLDNGETTVGTEVLVRHL 68 (130)
T ss_pred CCceeeEEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHH------------h-hCcCCcceeeEEEEeeec
Confidence 47888999999998888731 223345678888988776652 1 234588889999999999
Q ss_pred ecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcC
Q 015302 171 HYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQ 224 (409)
Q Consensus 171 r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~ 224 (409)
.+.--|.+|+|.+.+....+.... |.|+-..+|+.|.+|+. +-+.+|.+
T Consensus 69 a~~~~G~~V~i~~~l~~v~Gr~v~--f~i~a~~~~~~Ig~g~h---~R~iv~~~ 117 (130)
T COG5496 69 AATPPGLTVTIGARLEKVEGRKVK--FRIIAMEGGDKIGEGTH---TRVIVPRE 117 (130)
T ss_pred cCCCCCCeEEEEEEEEEEeccEEE--EEEEEeeCCcEEeeeEE---EEEEecHH
Confidence 999999999999999998666554 34443368999999999 77766654
No 38
>PRK10254 thioesterase; Provisional
Probab=95.78 E-value=0.63 Score=41.37 Aligned_cols=100 Identities=10% Similarity=-0.045 Sum_probs=80.7
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~T 183 (409)
+-.+.++...+.+.|.++=..++.+++.|+...+. .....+...+-..+++.|.||..-| .|..+.
T Consensus 37 ~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~-------------~~~~~g~~~vTiel~in~Lrp~~~g-~l~a~a 102 (137)
T PRK10254 37 EAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGF-------------LMTRDGQCVVGTELNATHHRPVSEG-KVRGVC 102 (137)
T ss_pred EEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHH-------------hhCCCCCeEEEEEEEeEEeccCcCC-eEEEEE
Confidence 45667777788999999999999999887654331 1123466789999999999999766 799999
Q ss_pred EEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEE
Q 015302 184 WVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMM 221 (409)
Q Consensus 184 wv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~m 221 (409)
.+.+.||.-..-+-+|+| ++|++++.++. +..++
T Consensus 103 ~vi~~Gr~~~v~~~~v~d-~~g~l~a~~~~---t~~i~ 136 (137)
T PRK10254 103 QPLHLGRQNQSWEIVVFD-EQGRRCCTCRL---GTAVL 136 (137)
T ss_pred EEEecCcCEEEEEEEEEc-CCCCEEEEEEE---EEEEe
Confidence 999999998888889997 79999999998 66543
No 39
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.61 E-value=0.44 Score=41.93 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=84.1
Q ss_pred EEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 015302 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (409)
Q Consensus 103 y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~ 182 (409)
-+..+.+......+.|.++=..++.+++.++...+... . + ....-+-..++|+|.||.+-|+ |+.+
T Consensus 36 ~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~--~--~---------~~~~~~ti~l~i~flr~~~~g~-v~a~ 101 (141)
T COG2050 36 AEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSL--L--G---------VVALAVTLELNINFLRPVKEGD-VTAE 101 (141)
T ss_pred EEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhc--c--C---------ccceeEEEEEEehhccCCCCCe-EEEE
Confidence 35777888888889999999999999998877665311 0 1 1112278899999999999999 9999
Q ss_pred EEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEc
Q 015302 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQ 223 (409)
Q Consensus 183 Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~ 223 (409)
-.+...|+.-...+.+++++..|+++|.++. ++..++.
T Consensus 102 a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~---t~~v~~~ 139 (141)
T COG2050 102 ARVLHLGRRVAVVEIEVKNDEGGRLVAKGTG---TYAVLRK 139 (141)
T ss_pred EEEEeeCCEEEEEEEEEEECCCCeEEEEEEE---EEEEecC
Confidence 9999999998888888996567799999999 9988764
No 40
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=95.10 E-value=0.28 Score=44.28 Aligned_cols=96 Identities=21% Similarity=0.115 Sum_probs=78.8
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~T 183 (409)
+.+++|.-..++++|.+.-...+.+.+..+..-+- |.+....-|-+.+.|.|..+...||.|.|+.
T Consensus 40 ~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~--------------~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a 105 (148)
T KOG3328|consen 40 SCELKVTPDHLNRFKTLHGGATATLVDLITSAALL--------------MTSGFKPGVSVDLSVSYLSSAKLGEELEIEA 105 (148)
T ss_pred EEEEEeCHHHcCccccccccchhhHHHHHhhHHHH--------------hccCCCCceEEEEEhhhccccCCCCeEEEEE
Confidence 57899999999999999999888888877655321 1122234467889999999999999999999
Q ss_pred EEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 184 WVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 184 wv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.+.+.||.-..-+-+++...+|+++|.++-
T Consensus 106 ~~vr~Gk~la~t~v~l~~K~t~kiia~grh 135 (148)
T KOG3328|consen 106 TVVRVGKTLAFTDVELRRKSTGKIIAKGRH 135 (148)
T ss_pred EEeecCceEEEEEEEEEEcCCCeEEEecce
Confidence 999999998877777787788999999887
No 41
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=94.83 E-value=0.38 Score=40.59 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=44.2
Q ss_pred EEEEEEeEEEEeecCCCCCEEEEEEEEeeeCC--ceEEEEEEEEEcCCCcEEEEEEE
Q 015302 159 IWVVSRMQVEIDHYPIWGEVVEIDTWVGASGK--NGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 159 ~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr--~~~~Rdf~I~d~~~GeviarAtS 213 (409)
..+....+++|.+|...||+|.++.++..... ..+.....+++ ++|+++++|+.
T Consensus 69 ~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~-~~g~~v~~g~~ 124 (128)
T cd03449 69 GTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTN-QNGEVVIEGEA 124 (128)
T ss_pred eEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEe-CCCCEEEEEEE
Confidence 45667899999999999999999999987643 45556667776 68999999987
No 42
>PLN02322 acyl-CoA thioesterase
Probab=93.14 E-value=4.9 Score=36.56 Aligned_cols=101 Identities=10% Similarity=-0.073 Sum_probs=76.8
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~T 183 (409)
+-.+.|+...+.+.|.++=..++.+++-|+. .+.. ....+...+-..+.+.|.+|.+.|+.|..+-
T Consensus 29 ~~~m~v~~~~~N~~G~vHGGv~atLaDta~g-~A~~-------------~~~~~~~~vTiel~infLrpa~~G~~L~Aea 94 (154)
T PLN02322 29 TGRLPVSPMCCQPFKVLHGGVSALIAESLAS-LGAH-------------MASGFKRVAGIQLSINHLKSADLGDLVFAEA 94 (154)
T ss_pred EEEEECCHHHcCCCCCccHHHHHHHHHHHHH-HHHh-------------hccCCCceEEEEEEEEEeccCCCCCEEEEEE
Confidence 4566677777999999999999999875543 2210 0111234688999999999999999999999
Q ss_pred EEeeeCCceEEEEEEEEEc----C-CCcEEEEEEEccEEEEEE
Q 015302 184 WVGASGKNGMRRDWLIRSQ----A-TGHIFARATRYIITWVMM 221 (409)
Q Consensus 184 wv~~~gr~~~~Rdf~I~d~----~-~GeviarAtS~~~~WV~m 221 (409)
++...|+....-+-+|++. + .|.+++.|+. +..++
T Consensus 95 ~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~---T~~~~ 134 (154)
T PLN02322 95 TPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRV---TLICN 134 (154)
T ss_pred EEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEE---EEEEc
Confidence 9999999888777888873 1 2688888888 76543
No 43
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=92.35 E-value=3.2 Score=36.29 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=64.8
Q ss_pred eEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEE
Q 015302 102 GYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (409)
Q Consensus 102 ~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I 181 (409)
..+..++.++.--+..|.+.-.+++.+.+-+....+.. ....+..|++..++|+|.+|.+ ..|..
T Consensus 30 ~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~-------------~l~~~~~~~~k~~~i~f~kpa~--g~v~a 94 (132)
T PF14539_consen 30 RVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMS-------------NLGDKYRVWDKSAEIDFLKPAR--GDVTA 94 (132)
T ss_dssp EEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHH-------------HS-TTEEEEEEEEEEEE-S-----S-EEE
T ss_pred EEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHH-------------hCCCcEEEEEEeeEEEEEeccC--CcEEE
Confidence 45677888888999999999999999999887765421 1123788999999999999964 44555
Q ss_pred EEEEee--eC-CceEEEEEEEEEcCCCcEEEEEEEccEEEE
Q 015302 182 DTWVGA--SG-KNGMRRDWLIRSQATGHIFARATRYIITWV 219 (409)
Q Consensus 182 ~Twv~~--~g-r~~~~Rdf~I~d~~~GeviarAtS~~~~WV 219 (409)
+..++. .+ +......-.|+| .+|++++++.. +|.
T Consensus 95 ~~~~~~e~~~~~~~~~~~v~i~D-~~G~~Va~~~~---t~~ 131 (132)
T PF14539_consen 95 TAELTEEQIGERGELTVPVEITD-ADGEVVAEATI---TWY 131 (132)
T ss_dssp EEE-TCCHCCHEEEEEEEEEEEE-TTC-EEEEEEE---EEE
T ss_pred EEEcCHHHhCCCcEEEEEEEEEE-CCCCEEEEEEE---EEE
Confidence 555443 33 333445556787 89999999999 884
No 44
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=92.04 E-value=3.3 Score=35.04 Aligned_cols=85 Identities=8% Similarity=-0.006 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEE
Q 015302 121 TLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIR 200 (409)
Q Consensus 121 ~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~ 200 (409)
.-.-.++++-+++..+.. ... + . ......+.+.-.++++.+|+.-||+|+++.++...+......+..++
T Consensus 46 Pg~l~iE~~aQ~~~~~~~---~~~-~-----~-~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~ 115 (131)
T cd01288 46 PGVLIIEALAQAAGILGL---KSL-E-----D-FEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAY 115 (131)
T ss_pred CchHHHHHHHHHHHHHhh---hcc-c-----c-cCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 333466777777766542 110 0 0 12345556666899999999999999999999887666555556665
Q ss_pred EcCCCcEEEEEEEccEEEEE
Q 015302 201 SQATGHIFARATRYIITWVM 220 (409)
Q Consensus 201 d~~~GeviarAtS~~~~WV~ 220 (409)
.+|+++++|+- +.+.
T Consensus 116 --~~g~~v~~~~~---~~~~ 130 (131)
T cd01288 116 --VDGKLVAEAEL---MFAI 130 (131)
T ss_pred --ECCEEEEEEEE---EEEE
Confidence 58999999988 6654
No 45
>PLN02647 acyl-CoA thioesterase
Probab=92.01 E-value=3.9 Score=43.28 Aligned_cols=115 Identities=8% Similarity=0.016 Sum_probs=79.8
Q ss_pred EEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 015302 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (409)
Q Consensus 103 y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~ 182 (409)
-+..+.+...+.+..|++.=..+|.++.|+|.--+. ....+..-.+.=-.|+|.+|...||.|.++
T Consensus 291 ~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~--------------r~a~~~~vt~svd~v~F~~PV~vGdil~l~ 356 (437)
T PLN02647 291 LENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAY--------------AFAGLRPYFLEVDHVDFLRPVDVGDFLRFK 356 (437)
T ss_pred eEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHH--------------HHcCCceEEEEecceEecCccccCcEEEEE
Confidence 346677889999999999999999999998875432 111233444444689999999999999986
Q ss_pred EEEee-----eCCceEEEEEE--EEEc--CCCcEEEEEEEccEEEEEEEc-CCCceecCCHH
Q 015302 183 TWVGA-----SGKNGMRRDWL--IRSQ--ATGHIFARATRYIITWVMMNQ-QTRRLSKIPAE 234 (409)
Q Consensus 183 Twv~~-----~gr~~~~Rdf~--I~d~--~~GeviarAtS~~~~WV~mD~-~tRRp~riPee 234 (409)
..+.. .|+.++..+-. +.+. .+++++..+.. ++|..|. .+++|.++|+-
T Consensus 357 A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~f---Tfva~d~~~~g~p~~Vp~V 415 (437)
T PLN02647 357 SCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYF---TFTVRPEAAMKNGFKIRNV 415 (437)
T ss_pred EEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEE---EEEEeccccCCCCccCCee
Confidence 65543 44455543322 2232 34556777777 9998886 36788888763
No 46
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=91.62 E-value=1.2 Score=35.76 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=49.3
Q ss_pred eEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 158 LIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 158 l~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
..-+...+++.|.+++.-++.+..+.++...|+....+.-+|++ .+|++++.+..
T Consensus 41 ~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~G~lva~~~~ 95 (99)
T cd00556 41 SGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQ-RDGKLVASATQ 95 (99)
T ss_pred CCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEEC-CCCcEEEEEEE
Confidence 34577889999999999999999999999999999888888986 67999999987
No 47
>PLN02864 enoyl-CoA hydratase
Probab=91.28 E-value=16 Score=36.76 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=46.5
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEEeeeCCce----EEEEEEEEEcCCCcEEEEEEEccEEEEEEE
Q 015302 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNG----MRRDWLIRSQATGHIFARATRYIITWVMMN 222 (409)
Q Consensus 161 VV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~----~~Rdf~I~d~~~GeviarAtS~~~~WV~mD 222 (409)
|=.+..|+++||...++.+++++++......+ +..+..+.+..+|+++++..+ +.++-.
T Consensus 95 VHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~s---t~~~Rg 157 (310)
T PLN02864 95 LHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRS---TIFLRG 157 (310)
T ss_pred eeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEE---EEEEeC
Confidence 44578999999999999999999998762222 456667777568999999999 777754
No 48
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=90.73 E-value=2 Score=36.55 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=41.8
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEEeeeCCc-eEEEEEEEEEcCCCcEEEEEEE
Q 015302 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASGKN-GMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 160 WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~-~~~Rdf~I~d~~~GeviarAtS 213 (409)
..+.+++++|.+|...||+|+++.++.+.... ......+++| ++|+++++++.
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~n-q~G~~v~~g~a 120 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARN-SEGDHVMAGTA 120 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEc-CCCCEEEeEEE
Confidence 44566799999999999999999999765322 4455667776 79999988887
No 49
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=90.46 E-value=3.6 Score=37.71 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=48.0
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEEeeeC----CceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceec
Q 015302 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASG----KNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSK 230 (409)
Q Consensus 161 VV~r~~Ie~~r~p~~gD~V~I~Twv~~~g----r~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~r 230 (409)
+-...+++|.+|...||+|+++.++.... +-.......++| ++|+++++++. +++.-..++....+
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~N-Q~Ge~V~~~~~---~~~~~~~~~~~~~~ 154 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTN-DDGELVMEAYT---TLMGQQGDNSASLK 154 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEC-CCCCEEEEEEE---EEEEecCCCceeec
Confidence 44557889999999999999999987652 123455566776 89999999999 77665544433333
No 50
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=90.09 E-value=1.7 Score=44.76 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=84.5
Q ss_pred ccccCceeEEEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCC
Q 015302 95 LIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPI 174 (409)
Q Consensus 95 ~~~~~g~~y~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~ 174 (409)
.+.+.+--|..++.|...-++..|++++..+..++.++...-+. .+.+---++-.+.+-|.+|..
T Consensus 325 ~l~e~~~~~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~---------------k~~~~niiIE~i~iyflk~vq 389 (432)
T COG4109 325 NLSEKGDEYGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLR---------------KKKKRNIIIENITIYFLKPVQ 389 (432)
T ss_pred hhhhhccccceEEEechhhccccccchHHHHHHHHHHHHHHHHH---------------HhcCCceEEEeeeeeeeccee
Confidence 44555666777789999999999999999999999998765543 122334567788999999999
Q ss_pred CCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 175 WGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 175 ~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
..+.++|...+...||.+...+.+|+. +|++++.|--
T Consensus 390 id~~l~I~prIl~~gR~~a~idvei~~--~~~ivaKAiv 426 (432)
T COG4109 390 IDSVLEIYPRILEEGRKFAKIDVEIYH--DGQIVAKAIV 426 (432)
T ss_pred cccEEEEeeeeeccccccceeEEEEee--Ccchhhhhee
Confidence 999999999999999999999999994 7888887765
No 51
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=89.31 E-value=3.8 Score=35.56 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=40.2
Q ss_pred EEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 162 VSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 162 V~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
+.++++++.+|...||+|+++.|+.+...-....++.+++..+|+++.+++.
T Consensus 70 ~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g~~ 121 (126)
T cd03447 70 VRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEETGELVLRGEA 121 (126)
T ss_pred EEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEEEE
Confidence 3457999999999999999999998754434566777887333888888876
No 52
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=89.13 E-value=4.1 Score=34.00 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=43.5
Q ss_pred eEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCC----ceEEEEEEEEEcCCCcEEEEEEE
Q 015302 158 LIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGK----NGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 158 l~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr----~~~~Rdf~I~d~~~GeviarAtS 213 (409)
..+++...+++|.+|...||+|+++.++..... ........+.+ ++|+++..++.
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~v~~g~~ 124 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARN-QGGEVVLSGEA 124 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEe-CCCCEEEEEEE
Confidence 467788999999999999999999999987632 23455666776 68888888765
No 53
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=88.94 E-value=15 Score=31.92 Aligned_cols=83 Identities=10% Similarity=0.020 Sum_probs=55.4
Q ss_pred cCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEE-eEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEE
Q 015302 120 ATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSR-MQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWL 198 (409)
Q Consensus 120 v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r-~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~ 198 (409)
+--.-+++++-+++..++. . ..+ .....+...++.+ .++++.++..-||+|++..++..........+..
T Consensus 53 ~Pg~l~iE~~aQ~~~~~~~---~---~~~---~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~ 123 (140)
T TIGR01750 53 MPGVLIVEALAQAGGVLAI---L---SLG---GEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGE 123 (140)
T ss_pred ChHHHHHHHHHHHHHHHhe---c---ccc---ccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEEE
Confidence 4455577888887765541 0 011 0011222344444 6999999999999999999998765555555666
Q ss_pred EEEcCCCcEEEEEEE
Q 015302 199 IRSQATGHIFARATR 213 (409)
Q Consensus 199 I~d~~~GeviarAtS 213 (409)
++ .+|+++++|+.
T Consensus 124 ~~--~~g~~va~~~~ 136 (140)
T TIGR01750 124 AT--VDGKVVAEAEI 136 (140)
T ss_pred EE--ECCEEEEEEEE
Confidence 65 58999999988
No 54
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=87.80 E-value=2.8 Score=36.33 Aligned_cols=48 Identities=6% Similarity=-0.051 Sum_probs=38.5
Q ss_pred eEEEEeecCCCCCEEEEEEEEeeeC-------CceEEEEEEEEEcCCCcEEEEEEE
Q 015302 165 MQVEIDHYPIWGEVVEIDTWVGASG-------KNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 165 ~~Ie~~r~p~~gD~V~I~Twv~~~g-------r~~~~Rdf~I~d~~~GeviarAtS 213 (409)
..+++.+|...||+|+++.++.+.. +-.......++| ++|+++++++.
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~ 135 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLN-QRGEVVLTFEA 135 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEc-CCCCEEEEEEe
Confidence 4899999999999999999997652 113455667776 79999999988
No 55
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=87.65 E-value=3.4 Score=35.65 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=37.7
Q ss_pred eEEEEeecCCCCCEEEEEEEEeeeCC-----c-eEEEEEEEEEcCCCcEEEEEEE
Q 015302 165 MQVEIDHYPIWGEVVEIDTWVGASGK-----N-GMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 165 ~~Ie~~r~p~~gD~V~I~Twv~~~gr-----~-~~~Rdf~I~d~~~GeviarAtS 213 (409)
..+++.+|...||+|+++.++..... . .+.....+++ ++|+++++++.
T Consensus 83 ~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~ 136 (140)
T cd03446 83 DNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVN-QRGEVVQSGEM 136 (140)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEc-CCCCEEEEEEE
Confidence 48999999999999999999976531 1 2344556666 79999999988
No 56
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=87.25 E-value=7.6 Score=35.22 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=45.7
Q ss_pred EEeEEEEeecCCCCCEEEEEEEEeeeC----CceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCC
Q 015302 163 SRMQVEIDHYPIWGEVVEIDTWVGASG----KNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTR 226 (409)
Q Consensus 163 ~r~~Ie~~r~p~~gD~V~I~Twv~~~g----r~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tR 226 (409)
...++++.+|.+.||+|+++.++.... +-.+.....+++ ++|++++++++ +.+.-..+.+
T Consensus 87 ~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~N-q~Ge~V~~~~~---~~~~r~~~~~ 150 (159)
T PRK13692 87 VDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTN-EEGDVVQETYT---TLAGRAGEDG 150 (159)
T ss_pred eeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEc-CCCCEEEEEEE---EEEEecCCcC
Confidence 347889999999999999999996432 223556667776 79999999999 8777655443
No 57
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=86.53 E-value=5.5 Score=34.11 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=39.5
Q ss_pred EEeEEEEeecCCCCCEEEEEEEEeee----CCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 163 SRMQVEIDHYPIWGEVVEIDTWVGAS----GKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 163 ~r~~Ie~~r~p~~gD~V~I~Twv~~~----gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.++.+++.+|...||+|+++.++.+. ++-....+..+++ ++|+++..++.
T Consensus 71 ~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~n-q~g~~v~~g~a 124 (127)
T cd03453 71 VSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATD-QAGGKKVLGRA 124 (127)
T ss_pred EEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEE-cCCCEEEEEEE
Confidence 56789999999999999999999753 2234556677787 78999888876
No 58
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=86.44 E-value=22 Score=31.14 Aligned_cols=85 Identities=7% Similarity=-0.004 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEE-eEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEE
Q 015302 120 ATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSR-MQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWL 198 (409)
Q Consensus 120 v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r-~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~ 198 (409)
+.-.-+++++-+++..++. ... . ..+..+++.. -++++.+|...||+|+++.++...++.....+..
T Consensus 60 ~PG~l~iE~~aQ~~~~~~~---~~~-------~--~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~ 127 (147)
T PRK00006 60 MPGVLIIEAMAQAAGVLAL---KSE-------E--NKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGV 127 (147)
T ss_pred CchhHHHHHHHHHHHHHHh---cCc-------C--cCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEE
Confidence 3444566777776655431 110 0 1223444444 4799999999999999999998776555555666
Q ss_pred EEEcCCCcEEEEEEEccEEEEEE
Q 015302 199 IRSQATGHIFARATRYIITWVMM 221 (409)
Q Consensus 199 I~d~~~GeviarAtS~~~~WV~m 221 (409)
+. .+|+++++|+. ..++-
T Consensus 128 ~~--~~g~~v~~~~~---~~~~~ 145 (147)
T PRK00006 128 AT--VDGKLVAEAEL---MFAIR 145 (147)
T ss_pred EE--ECCEEEEEEEE---EEEEE
Confidence 65 48999999999 77653
No 59
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=86.28 E-value=19 Score=30.24 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=61.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEE
Q 015302 117 DKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRD 196 (409)
Q Consensus 117 ~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rd 196 (409)
++.+.-.-+++++-+++..++.. . +... . ........+.--.+++.++..-||+|+++.++...+......+
T Consensus 41 ~p~lPg~~~iE~~aQ~~~~~~~~---~--~~~~--~-~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~ 112 (131)
T cd00493 41 DPVMPGVLGIEAMAQAAAALAGL---L--GLGK--G-NPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFD 112 (131)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHh---c--cccc--c-cCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEE
Confidence 35677778889999988888631 1 1100 0 1223344455579999999999999999999988765555666
Q ss_pred EEEEEcCCCcEEEEEEE
Q 015302 197 WLIRSQATGHIFARATR 213 (409)
Q Consensus 197 f~I~d~~~GeviarAtS 213 (409)
..++. +|+++++++-
T Consensus 113 ~~~~~--~g~~v~~~~~ 127 (131)
T cd00493 113 GRAYV--DGKLVAEAEL 127 (131)
T ss_pred EEEEE--CCEEEEEEEE
Confidence 67774 6999988875
No 60
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=85.44 E-value=7.9 Score=36.02 Aligned_cols=59 Identities=10% Similarity=-0.067 Sum_probs=45.5
Q ss_pred CeEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEE
Q 015302 157 NLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVM 220 (409)
Q Consensus 157 gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~ 220 (409)
+..-+..-..++|.+|...||+|.++.++...++........++ .+|+++++|.. +.+.
T Consensus 123 ~~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~--v~g~~V~ege~---~~~~ 181 (185)
T PRK04424 123 AELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSY--VGDELVFRGKF---IMYR 181 (185)
T ss_pred CcEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEE--ECCEEEEEEEE---EEEE
Confidence 34455566799999999999999999999987665444444555 58999999998 6654
No 61
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=84.96 E-value=5 Score=34.81 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=37.5
Q ss_pred eEEEEeecCCCCCEEEEEEEEeeeCC-------ceEEEEEEEEEcCCCcEEEEEEE
Q 015302 165 MQVEIDHYPIWGEVVEIDTWVGASGK-------NGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 165 ~~Ie~~r~p~~gD~V~I~Twv~~~gr-------~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.+++|.+|...||+|+++.++..... ..+.....+++ ++|+++++++.
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~ 138 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYN-QDGEPVLSFER 138 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEEC-CCCCEEEEEEe
Confidence 48999999999999999999976531 13344455665 78999999998
No 62
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=81.91 E-value=5.1 Score=34.25 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=36.2
Q ss_pred eEEEEEEeEEEEeecCCCCCEEEEEEEEeeeC-C----ce--EEEEEEEEEcCCCcEEEE
Q 015302 158 LIWVVSRMQVEIDHYPIWGEVVEIDTWVGASG-K----NG--MRRDWLIRSQATGHIFAR 210 (409)
Q Consensus 158 l~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~g-r----~~--~~Rdf~I~d~~~Geviar 210 (409)
..-|-....+++++|++-||+|++++.+.... | .+ ...+.+++| ++|+++++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~-~~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTD-QDGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEEC-CCCCEEEe
Confidence 34555679999999999999999999997642 2 12 345566776 78998875
No 63
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=80.34 E-value=13 Score=39.52 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=47.6
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEEeee--CCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCce
Q 015302 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGAS--GKNGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRL 228 (409)
Q Consensus 160 WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~--gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp 228 (409)
.+....+++|.+|...||+|+++.++... ++........+++ ++|++++.++. ++++-...=.+|
T Consensus 83 ~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~n-q~G~~V~~g~~---~~l~~~~~~~~~ 149 (466)
T PRK08190 83 TIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTN-QDGEVVITGTA---EVIAPTEKVRRP 149 (466)
T ss_pred eEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEe-CCCCEEEEEEE---Eeeccccccccc
Confidence 34566899999999999999999999754 3334455566677 79999999998 766544333333
No 64
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=80.16 E-value=11 Score=35.74 Aligned_cols=51 Identities=22% Similarity=0.111 Sum_probs=45.0
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 160 WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
..+..+++.|.++...| .+++++...+.||....+.-++. ++|+++++|+.
T Consensus 34 ~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~--q~~~~~~~a~~ 84 (255)
T PF13622_consen 34 FDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELS--QDGKVVATATA 84 (255)
T ss_dssp SEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEE--ETTEEEEEEEE
T ss_pred CceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEE--ECCcCEEEEEE
Confidence 77889999999999999 99999999999999999988887 58889988888
No 65
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=79.13 E-value=15 Score=30.20 Aligned_cols=51 Identities=14% Similarity=-0.012 Sum_probs=45.0
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 161 VV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.+..+++.|.+++..+..|++++.....||+...|.-... ++|++++.++.
T Consensus 40 ~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~--Q~g~~~~~a~~ 90 (94)
T cd03445 40 VPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV--QNGKVIFTATA 90 (94)
T ss_pred CeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEE--ECCEEEEEEEE
Confidence 3667999999999999999999999999999998877776 57998888876
No 66
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=78.07 E-value=12 Score=32.89 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=38.2
Q ss_pred eEEEEeecCCCCCEEEEEEEEeeeC--C----ceEEEEEEEEEcCCCcEEEEEEE
Q 015302 165 MQVEIDHYPIWGEVVEIDTWVGASG--K----NGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 165 ~~Ie~~r~p~~gD~V~I~Twv~~~g--r----~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.++++.+|...||+|+++..+.... + ..+.....+.+ ++|+++++++.
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~ 134 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTN-QNGELVASYDI 134 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEe-cCCCEEEEEEe
Confidence 4899999999999999999997652 1 13456667776 78999999887
No 67
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=74.64 E-value=39 Score=28.21 Aligned_cols=64 Identities=5% Similarity=-0.032 Sum_probs=46.8
Q ss_pred cceeeccccCccCCccchHHHHHHHHHhCCcchh--c-ccceEEEEEEEecccCCCCeEEEEEEEcC
Q 015302 269 SDLKPKRSDLDMNHHVNNVKYVRWMLETIPDRIL--E-SNQLSGITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 269 ~~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~~~~--~-~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
-.+.++..+++.+|-+.=-.+..++..+...... . ...-.+++++|++|+..||.|....++..
T Consensus 18 ~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~ 84 (114)
T TIGR02286 18 VAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGERLEAEAVEVS 84 (114)
T ss_pred EEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCCEEEEEEEEEE
Confidence 3577788888888888888888888876321111 1 12346889999999999999999887754
No 68
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=70.03 E-value=1.8 Score=40.73 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=81.1
Q ss_pred cccCCCC-CcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCC
Q 015302 112 YEVGPDK-TATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGK 190 (409)
Q Consensus 112 ~EvD~~g-~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr 190 (409)
.|+|-.- |+||+.|+.=+.-|+.+|..-.|.. ..+...+..-|..-.-+.|.|.++.=+...|.|.+..-..
T Consensus 60 ~dlDtll~HmnNArYfrElDfAR~~~~~r~~l~-------~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sRiI~WDe 132 (213)
T KOG4366|consen 60 TDLDTLLSHMNNARYFRELDFARVNFYCRTGLY-------LMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSRIICWDE 132 (213)
T ss_pred chHHHHHHHhhhhHHHHHhhHHHHHHHHHHhHH-------HHHHhcCCCeeechhhhhhhhhcCCCCccceeeEEEEEch
Confidence 4666654 9999999999999999997532211 1345556666777777889999999999999999976543
Q ss_pred --ceEEEEEEEEEcCCCcEEEEEEEccEEEEEEEcCCCceecCCHHHHHhcCccccc
Q 015302 191 --NGMRRDWLIRSQATGHIFARATRYIITWVMMNQQTRRLSKIPAEVRAEISPWFID 245 (409)
Q Consensus 191 --~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD~~tRRp~riPeevre~i~p~~~~ 245 (409)
+++.-.|.+. .+|=+++-|.+ ..++.| -.++++..++-|...+
T Consensus 133 kaiyle~rFv~~--sd~fvcala~~---kq~l~d-------ts~~~v~~e~c~~~~e 177 (213)
T KOG4366|consen 133 KAIYLESRFVIL--SDGFVCALALT---KQVLKD-------TSKEKVALELCPRTNE 177 (213)
T ss_pred hhhhhhhheeec--cCceEeehHHH---HHHHhc-------CCHHHHHHHHhhhhcc
Confidence 3444456665 68989999999 888887 2345555444443333
No 69
>PRK10694 acyl-CoA esterase; Provisional
Probab=69.97 E-value=8.8 Score=33.83 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=49.2
Q ss_pred ceeeccccCccCCccchHHHHHHHHHhCCc---chhc-ccceEEE-EEEEecccCCCCeEEEEEEEcCC
Q 015302 270 DLKPKRSDLDMNHHVNNVKYVRWMLETIPD---RILE-SNQLSGI-TLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 270 ~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~---~~~~-~~~l~~i-~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
...+...|...+|-+.--.-+.|+.++... .+.. .....++ .++|++|++.||.|.+..++..-
T Consensus 15 ~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~ 83 (133)
T PRK10694 15 RTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKT 83 (133)
T ss_pred EEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEc
Confidence 457889999999999999999999997421 1111 2245566 67999999999999999988653
No 70
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=68.23 E-value=1.7 Score=40.79 Aligned_cols=54 Identities=24% Similarity=0.229 Sum_probs=34.2
Q ss_pred ccCccCC-ccchHHHHHHHHHhCC--------cchhc----ccceEEEEEEEecccCCCCeEEEEEE
Q 015302 276 SDLDMNH-HVNNVKYVRWMLETIP--------DRILE----SNQLSGITLEYRRECGGSDVVQSLCQ 329 (409)
Q Consensus 276 sDlD~Ng-HVNN~~Yl~w~~ealp--------~~~~~----~~~l~~i~I~Y~~E~~~gd~v~~~t~ 329 (409)
+|+|..- |+||++|++=+.=+.. ...+. .....--.+.|+|++++-+...+.+.
T Consensus 60 ~dlDtll~HmnNArYfrElDfAR~~~~~r~~l~~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sR 126 (213)
T KOG4366|consen 60 TDLDTLLSHMNNARYFRELDFARVNFYCRTGLYLMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSR 126 (213)
T ss_pred chHHHHHHHhhhhHHHHHhhHHHHHHHHHHhHHHHHHhcCCCeeechhhhhhhhhcCCCCccceeeE
Confidence 9999988 9999999984322210 00111 12233445569999999887666654
No 71
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=65.53 E-value=53 Score=28.26 Aligned_cols=87 Identities=10% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCC-----c
Q 015302 117 DKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGK-----N 191 (409)
Q Consensus 117 ~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr-----~ 191 (409)
.+|+..--+++=+-+++..-.. ..++. ..+..+++..+.+++.++..+.-.+.|...+..... .
T Consensus 40 ~dh~~gmll~Ea~RQa~~~~~h------~~~~v-----p~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~ 108 (132)
T PF03756_consen 40 GDHVPGMLLLEAARQAGIALAH------RFYGV-----PLDHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPR 108 (132)
T ss_pred CCccChHHHHHHHHHHHHHhhc------cccCC-----CCCceEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccc
Confidence 4456655555555555444321 12222 124568999999999999988888888887764322 3
Q ss_pred eEEEEEEEEEcCCCcEEEEEEEccEEEE
Q 015302 192 GMRRDWLIRSQATGHIFARATRYIITWV 219 (409)
Q Consensus 192 ~~~Rdf~I~d~~~GeviarAtS~~~~WV 219 (409)
.+.....+. ++|+++++++. .+-
T Consensus 109 ~~~~~v~~~--q~g~~~a~~~~---~~t 131 (132)
T PF03756_consen 109 GLRFRVTVS--QGGRVVATASM---TFT 131 (132)
T ss_pred eEEEEEEEE--ECCEEEEEEEE---EEE
Confidence 556666676 69999999998 664
No 72
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=62.38 E-value=1.1e+02 Score=26.84 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=66.0
Q ss_pred EEEEEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 015302 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (409)
Q Consensus 104 ~~~~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~T 183 (409)
+-+..++. +.+..|.+.=..++.++..++..-+.. .. ... ..+..-|+...+|+|.+|.+- + +.+..
T Consensus 25 ~v~~pl~~-n~N~~G~~hGG~l~tlad~a~~~~~~~--------~~-~~~-~~~~~~vt~~~~i~yl~P~~~-~-~~a~~ 91 (138)
T TIGR02447 25 RLSAPLAA-NINHHGTMFGGSLYTLATLSGWGLLWL--------RL-QEL-GIDGDIVIADSHIRYLAPVTG-D-PVANC 91 (138)
T ss_pred EEEeECCC-CcCCCCceehhHHHHHHHHHHHHHHHH--------HH-HHh-CCCCcEEEEEeeeEEcCCcCC-C-eEEEE
Confidence 45556666 489999999999999995443321110 00 011 112345777899999998864 4 55554
Q ss_pred EE-------------eeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEE
Q 015302 184 WV-------------GASGKNGMRRDWLIRSQATGHIFARATRYIITWVMM 221 (409)
Q Consensus 184 wv-------------~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~m 221 (409)
.+ ...||..+..+-+|++ +|+++|+++. +++.+
T Consensus 92 ~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g---~~~~~ 137 (138)
T TIGR02447 92 EAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSG---EYVAL 137 (138)
T ss_pred EcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEE---EEEEe
Confidence 44 3446666667777884 7899999999 88864
No 73
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=59.78 E-value=33 Score=33.11 Aligned_cols=50 Identities=8% Similarity=-0.110 Sum_probs=45.2
Q ss_pred EEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 162 VSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 162 V~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
+..+++.|.+++..+..|++++.....||....|.-.++ ++|+++++++.
T Consensus 46 ~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~--Q~g~~~~~a~a 95 (271)
T TIGR00189 46 PHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAV--QHGKTIFTLQA 95 (271)
T ss_pred cceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEE--ECCEEEEEEEE
Confidence 457999999999999999999999999999999888777 58899999887
No 74
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=56.85 E-value=71 Score=27.16 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=23.4
Q ss_pred ceEEEEEEEecccCCCCeEEEEEEEcC
Q 015302 306 QLSGITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 306 ~l~~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
.+.++.+.|++|++.||+|.+...+.+
T Consensus 69 ~i~~~~~rf~~Pv~~Gdtl~~~~~v~~ 95 (127)
T cd03453 69 RVVSFGVRFTKPVPVPDTLTCTGIVVE 95 (127)
T ss_pred ceEEEEEEECCcCcCCCEEEEEEEEEE
Confidence 457888999999999999999888764
No 75
>PRK11688 hypothetical protein; Provisional
Probab=55.54 E-value=72 Score=28.35 Aligned_cols=64 Identities=5% Similarity=-0.095 Sum_probs=43.7
Q ss_pred ccceeeccccCc--cCCccchHHHHHHHHHhCCcchhc-------------------ccceEEEEEEEecccCCCCeEEE
Q 015302 268 NSDLKPKRSDLD--MNHHVNNVKYVRWMLETIPDRILE-------------------SNQLSGITLEYRRECGGSDVVQS 326 (409)
Q Consensus 268 ~~~~~vr~sDlD--~NgHVNN~~Yl~w~~ealp~~~~~-------------------~~~l~~i~I~Y~~E~~~gd~v~~ 326 (409)
...++++...+. ..|.++=-.....+..++...... ...-.+++++|++|+. |+.|..
T Consensus 40 ~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a 118 (154)
T PRK11688 40 ELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTA 118 (154)
T ss_pred EEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEE
Confidence 345667777775 468888888888887765322110 1123589999999995 988888
Q ss_pred EEEEcC
Q 015302 327 LCQPDE 332 (409)
Q Consensus 327 ~t~~~~ 332 (409)
...+..
T Consensus 119 ~a~v~~ 124 (154)
T PRK11688 119 TSSVLR 124 (154)
T ss_pred EEEEEE
Confidence 887654
No 76
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=52.81 E-value=1e+02 Score=26.65 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=55.1
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCC-EEEEEEEEee---eCCce
Q 015302 117 DKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGE-VVEIDTWVGA---SGKNG 192 (409)
Q Consensus 117 ~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD-~V~I~Twv~~---~gr~~ 192 (409)
+..+--.-+++.+.+++...+...+. ..+.+ ......+...--++++.++..-|| .++++..+.+ .....
T Consensus 47 ~Pv~PGvl~iE~~aQ~~~~~~~~~~~-~~~~~-----~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~ 120 (138)
T PF07977_consen 47 DPVMPGVLLIEAMAQAAGFLAGYSGL-AEGTG-----EARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGM 120 (138)
T ss_dssp S--B-HHHHHHHHHHHHHHHHHHHCC-SSSCC-----CCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTE
T ss_pred CCCCCeEhHHHHHHHHHHhHhhhccc-cccCC-----CcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCE
Confidence 34455556778888877776532111 00111 011356677778999999999999 9999999888 55666
Q ss_pred EEEEEEEEEcCCCcEEEEEE
Q 015302 193 MRRDWLIRSQATGHIFARAT 212 (409)
Q Consensus 193 ~~Rdf~I~d~~~GeviarAt 212 (409)
...+..++ .+|+.+++|.
T Consensus 121 ~~~~~~~~--vdg~~v~~~~ 138 (138)
T PF07977_consen 121 AIFDGTAY--VDGELVAEAE 138 (138)
T ss_dssp EEEEEEEE--ETTEEEEEEE
T ss_pred EEEEEEEE--ECCEEEEEEC
Confidence 66667777 4899998874
No 77
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=49.17 E-value=1e+02 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.7
Q ss_pred eEEEEEEEecccCCCCeEEEEEEEcC
Q 015302 307 LSGITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 307 l~~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
..+.++.|++|+..||.|.+...+.+
T Consensus 72 ~~~~~~~f~~Pv~~gd~l~~~~~v~~ 97 (128)
T cd03449 72 YLSQSLRFLRPVFIGDTVTATVTVTE 97 (128)
T ss_pred EEEEEEEECCCccCCCEEEEEEEEEE
Confidence 45789999999999999999888754
No 78
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=48.09 E-value=1.6e+02 Score=31.62 Aligned_cols=85 Identities=9% Similarity=-0.039 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEE-eEEEEeecCCCCCEEEEEEEEee-eCCceEEEEEE
Q 015302 121 TLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSR-MQVEIDHYPIWGEVVEIDTWVGA-SGKNGMRRDWL 198 (409)
Q Consensus 121 ~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r-~~Ie~~r~p~~gD~V~I~Twv~~-~gr~~~~Rdf~ 198 (409)
.-.-.+++|-+++...+. .+.+ ...+...++.. -++++.+|..-||+|+++..+.. ..+.....+-.
T Consensus 374 PGVL~IEaMAQaagil~~------~~~~-----~~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~ 442 (464)
T PRK13188 374 PGVLQIEAMAQTGGILVL------NTVP-----DPENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGK 442 (464)
T ss_pred ccHHHHHHHHHHHHHHHh------hccC-----CCCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEE
Confidence 333446777776654431 0111 01233344444 59999999999999999999865 32223334444
Q ss_pred EEEcCCCcEEEEEEEccEEEEEE
Q 015302 199 IRSQATGHIFARATRYIITWVMM 221 (409)
Q Consensus 199 I~d~~~GeviarAtS~~~~WV~m 221 (409)
++ .+|+++++|.. ..++.
T Consensus 443 ~~--vdGelVaeael---~~~v~ 460 (464)
T PRK13188 443 AY--VNGKLVCEAEL---MAQIV 460 (464)
T ss_pred EE--ECCEEEEEEEE---EEEEe
Confidence 55 58999999998 77654
No 79
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=47.52 E-value=1e+02 Score=26.47 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=32.1
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEE
Q 015302 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARAT 212 (409)
Q Consensus 161 VV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAt 212 (409)
.+..+.+++.+|...||+|.++.|.. ++ .. .|.+...++|+++..+.
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~~--~~-~v--~~~~~~~~~g~~v~~g~ 117 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWKE--GN-RV--IFQTKVVERDVVVLSNG 117 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEEe--CC-EE--EEEEEEccCCcEEEECC
Confidence 45567999999999999999999953 33 22 34443334677665543
No 80
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=45.22 E-value=44 Score=28.27 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=26.2
Q ss_pred eEEEEEEeEEEEeecCCCCCEEEEEEEEeeeC
Q 015302 158 LIWVVSRMQVEIDHYPIWGEVVEIDTWVGASG 189 (409)
Q Consensus 158 l~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~g 189 (409)
....+.+..+++.+|...||+|.+..++.+..
T Consensus 74 ~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~ 105 (122)
T PF01575_consen 74 PPARLGRFNVRFRAPVFPGDTLTAEVEVTEKR 105 (122)
T ss_dssp ECEEEEEEEEEESS--BTTEEEEEEEEEEEEE
T ss_pred cceEEEEEEEEEeccccCCCEEEEEEEEEEEE
Confidence 35778889999999999999999999998743
No 81
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=42.57 E-value=96 Score=30.70 Aligned_cols=52 Identities=12% Similarity=-0.102 Sum_probs=46.5
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 160 WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
-++..+++-|.+|...+..|+.++.....||++..|.-..+ ++|++|+.++.
T Consensus 55 ~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~--Q~g~~if~~~~ 106 (286)
T PRK10526 55 RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAI--QNGKPIFYMTA 106 (286)
T ss_pred CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEE--ECCEEEEEEEE
Confidence 36778999999999999999999999999999999877777 68999988887
No 82
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=41.29 E-value=57 Score=26.92 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=25.2
Q ss_pred cceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 305 NQLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 305 ~~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
..+...++.|++|++.||+|.+..++.+.
T Consensus 68 ~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~ 96 (127)
T cd03441 68 ANLGSQSVRFLAPVFPGDTLRVEVEVLGK 96 (127)
T ss_pred ceeEEeEEEEeCCcCCCCEEEEEEEEEEe
Confidence 35678999999999999999999987653
No 83
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=39.97 E-value=1.7e+02 Score=24.26 Aligned_cols=53 Identities=8% Similarity=-0.067 Sum_probs=40.9
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 160 WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
-.-..+.|.+++++...|=+..+.+....+.-+..-.=.|++ ++|+++|....
T Consensus 48 ~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~-~~G~LvAs~~Q 100 (104)
T cd03444 48 SASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFT-RDGELVASVAQ 100 (104)
T ss_pred eEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEEC-CCCCEEEEEEE
Confidence 345567889999999889999998887765555544556786 79999998876
No 84
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=38.09 E-value=2.7e+02 Score=24.24 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=57.3
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCC-CCEEEEEEEEeeeCC-ceEE
Q 015302 117 DKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIW-GEVVEIDTWVGASGK-NGMR 194 (409)
Q Consensus 117 ~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~-gD~V~I~Twv~~~gr-~~~~ 194 (409)
++.+.-..++++|-+++..+.- .. .. ..-.+..++..+.=-++++.++..- ||++.|+........ ....
T Consensus 44 ~~~~P~~l~iE~mAQa~a~~~g---~~----~~-~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~ 115 (138)
T cd01289 44 HGRLPAWVGIEYMAQAIAAHGG---LL----AR-QQGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGV 115 (138)
T ss_pred CCCcchHHHHHHHHHHHHHHHH---HH----HH-hcCCCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEE
Confidence 3678888999999999877741 00 00 0001233455555568899988544 999999988766543 4444
Q ss_pred EEEEEEEcCCCcEEEEEEE
Q 015302 195 RDWLIRSQATGHIFARATR 213 (409)
Q Consensus 195 Rdf~I~d~~~GeviarAtS 213 (409)
.+=.++ .+|+++|+|+-
T Consensus 116 ~~~~~~--v~~~~va~a~l 132 (138)
T cd01289 116 FECTIE--DQGGVLASGRL 132 (138)
T ss_pred EEEEEE--ECCEEEEEEEE
Confidence 444555 47899999987
No 85
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=36.98 E-value=1.8e+02 Score=26.04 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=40.0
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEEeeeC--C-ceE-EEEEEEEEcCCCcEEEEEEEccEEEEEE
Q 015302 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASG--K-NGM-RRDWLIRSQATGHIFARATRYIITWVMM 221 (409)
Q Consensus 160 WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~g--r-~~~-~Rdf~I~d~~~GeviarAtS~~~~WV~m 221 (409)
-.+.-..+++.+|...||+|..++++.... + .++ .-.-..++ ..|+....... .+++.
T Consensus 94 ~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~-~~g~~v~~~~~---~~~~~ 155 (159)
T COG2030 94 ANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVN-QEGELVLTLEA---TVLVL 155 (159)
T ss_pred eeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEc-cCCcEEEEEEE---eEeEe
Confidence 344557889999999999999999997642 1 122 12223444 78888888888 66553
No 86
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=36.21 E-value=68 Score=27.05 Aligned_cols=28 Identities=4% Similarity=-0.006 Sum_probs=24.3
Q ss_pred cceEEEEEEEecccCCCCeEEEEEEEcC
Q 015302 305 NQLSGITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 305 ~~l~~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
..+.++++.|++|++.||+|.+...+.+
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~ 94 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTA 94 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEe
Confidence 3567889999999999999999988764
No 87
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=34.25 E-value=3.1e+02 Score=24.54 Aligned_cols=89 Identities=10% Similarity=-0.111 Sum_probs=56.1
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCC-EEEEEEEEeeeCC----c
Q 015302 117 DKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGE-VVEIDTWVGASGK----N 191 (409)
Q Consensus 117 ~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD-~V~I~Twv~~~gr----~ 191 (409)
+..+--.-+++.|-+++...+-.. |..... -....+.+...--.++++++..-|| +|+++..+.+.+. .
T Consensus 49 ~pvmPG~L~iEamaQ~~~~~~~~~-----~~~~~~-~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~ 122 (150)
T cd01287 49 DPVMPGSLGLEAMIQLLQFYLIWL-----GLGTGV-DNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRP 122 (150)
T ss_pred CCcCchHHHHHHHHHHHHHHHhhc-----cccccc-CcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCcc
Confidence 444555566777777765554211 111000 0012244455556899999999999 8999999988753 4
Q ss_pred eEEEEEEEEEcCCCcEEEEEEE
Q 015302 192 GMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 192 ~~~Rdf~I~d~~~GeviarAtS 213 (409)
.+.-+-.++ .+|+++++|+.
T Consensus 123 ~~~~~~~~~--vdg~~v~~a~~ 142 (150)
T cd01287 123 YIIADASLW--VDGLRIYEAKD 142 (150)
T ss_pred EEEEEEEEE--ECCEEEEEEEc
Confidence 444455555 48999999987
No 88
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=33.46 E-value=92 Score=28.57 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=45.9
Q ss_pred ceeeccccCccCCccchHHHHHHHHHhCC---cchhcccc--eEEEEEEEecccCCCCeEEEEEEEcCCc
Q 015302 270 DLKPKRSDLDMNHHVNNVKYVRWMLETIP---DRILESNQ--LSGITLEYRRECGGSDVVQSLCQPDEDG 334 (409)
Q Consensus 270 ~~~vr~sDlD~NgHVNN~~Yl~w~~ealp---~~~~~~~~--l~~i~I~Y~~E~~~gd~v~~~t~~~~~~ 334 (409)
...+-++|.+.||-+.=-.-+.||.++.. .++..+.. +.--.++|++|++.||.|.+..++..-+
T Consensus 17 ~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~G 86 (157)
T COG1607 17 RTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTG 86 (157)
T ss_pred EEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecC
Confidence 35678889998888777777777776521 12222322 2344689999999999999999987654
No 89
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=29.82 E-value=3.2e+02 Score=22.56 Aligned_cols=64 Identities=6% Similarity=-0.105 Sum_probs=45.1
Q ss_pred ccceeeccccCccCCccchHHHHHHHHHhCCcc----hhc--ccceEEEEEEEecccCCCCeEEEEEEEcC
Q 015302 268 NSDLKPKRSDLDMNHHVNNVKYVRWMLETIPDR----ILE--SNQLSGITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 268 ~~~~~vr~sDlD~NgHVNN~~Yl~w~~ealp~~----~~~--~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
...+.++....+..|.++=-....|++.+...- ... ...-.+++++|++|+..| .|.....+..
T Consensus 19 ~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~ 88 (117)
T TIGR00369 19 EATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQVVH 88 (117)
T ss_pred EEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEEEEe
Confidence 345777888888888888888888877664111 111 123468999999999999 8888777654
No 90
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=27.50 E-value=2.6e+02 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=20.0
Q ss_pred EEEEecccCCCCeEEEEEEEcC
Q 015302 311 TLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 311 ~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
++.|++|++.||+|.+...+.+
T Consensus 84 ~~~f~~pv~~GD~l~~~~~v~~ 105 (140)
T cd03446 84 NLRFLNPVFIGDTIRAEAEVVE 105 (140)
T ss_pred eEEEcCCCCCCCEEEEEEEEEE
Confidence 8999999999999999988764
No 91
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=27.02 E-value=91 Score=26.32 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=33.1
Q ss_pred CCccchHHHHHHHHHhCCcchhcccceEEEEEEEecccCCCCeEEEEEEEcC
Q 015302 281 NHHVNNVKYVRWMLETIPDRILESNQLSGITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 281 NgHVNN~~Yl~w~~ealp~~~~~~~~l~~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
.|....+.-..++.+.++.. ....+..+.+.|++|++.||+|.+..++.+
T Consensus 54 hG~~~~a~~~~~~~~~~~~~--~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~ 103 (122)
T PF01575_consen 54 HGMLTLALASGLLGDWLGPN--PPARLGRFNVRFRAPVFPGDTLTAEVEVTE 103 (122)
T ss_dssp BHHHHHHHHHHHHHHHHSTT--ECEEEEEEEEEESS--BTTEEEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHhccCc--cceEEEEEEEEEeccccCCCEEEEEEEEEE
Confidence 34444444445555555443 124678999999999999999999998876
No 92
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=26.64 E-value=1.8e+02 Score=32.44 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=37.2
Q ss_pred eEEEEeecCCCCCEEEEEEEEeeeC-----Cc-eEEEEEEEEEcCCCcEEEEEEE
Q 015302 165 MQVEIDHYPIWGEVVEIDTWVGASG-----KN-GMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 165 ~~Ie~~r~p~~gD~V~I~Twv~~~g-----r~-~~~Rdf~I~d~~~GeviarAtS 213 (409)
.+++|.+|...||+|+++..+.... .. .+..+..+++ ++|+++.++..
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~n-q~G~~Vl~~~~ 657 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVN-QNGEPVATYDV 657 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEc-CCCCEEEEEEE
Confidence 4899999999999999999997542 11 2455566776 78999888876
No 93
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=26.08 E-value=2.7e+02 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.6
Q ss_pred EEEEEEecccCCCCeEEEEEEEcC
Q 015302 309 GITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 309 ~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
..++.|.+|++.||+|.....+.+
T Consensus 88 ~q~~~f~~PV~~GDtL~~~~eV~~ 111 (159)
T PRK13692 88 DQVLKFEKPIVAGDKLYCDVYVDS 111 (159)
T ss_pred eeEEEEeCCccCCCEEEEEEEEEE
Confidence 368999999999999999887754
No 94
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=25.42 E-value=5e+02 Score=23.38 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=45.2
Q ss_pred eEEEEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEEccEEEEEEE
Q 015302 158 LIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIITWVMMN 222 (409)
Q Consensus 158 l~WVV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS~~~~WV~mD 222 (409)
+..++.=-++++.++..-||.+.++......++..+..-.-.. ..+|+++++|+. ..+.+.
T Consensus 85 ~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a-~Vdg~~v~~a~~---~~~~~~ 145 (147)
T COG0764 85 LGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVA-TVDGKVVAEAEL---LFAGVE 145 (147)
T ss_pred EEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEE-EECCEEEEEEEE---EEEEee
Confidence 6666666789999999999999999998887733333222222 258999999998 777654
No 95
>PLN02864 enoyl-CoA hydratase
Probab=25.09 E-value=3.2e+02 Score=27.51 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=34.9
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 161 VV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.+.++++++.+|...||+|.++.|.. ++. . .|.+...++|+++..+..
T Consensus 254 ~~~~~~~rF~~PV~pGdtl~~~~~~~--~~~-v--~~~~~~~~~g~~vl~G~a 301 (310)
T PLN02864 254 AVKTISGRFLLHVYPGETLVTEMWLE--GLR-V--IYQTKVKERNKAVLSGYV 301 (310)
T ss_pred eEEEEEEEEcCCccCCCEEEEEEEeC--CCE-E--EEEEEEecCCeEEEEEEE
Confidence 56778999999999999999999964 222 2 234443367888777766
No 96
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=24.99 E-value=1.8e+02 Score=32.49 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=36.9
Q ss_pred EEEEeecCCCCCEEEEEEEEeeeC--C----ceEEEEEEEEEcCCCcEEEEEEE
Q 015302 166 QVEIDHYPIWGEVVEIDTWVGASG--K----NGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 166 ~Ie~~r~p~~gD~V~I~Twv~~~g--r----~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.++|.+|...||+|+++..+.... + -.+..+..+++ ++|+++.++..
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~G~~V~~~~~ 669 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTN-QDGELVATYDI 669 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEE-CCCCEEEEEEE
Confidence 789999999999999999997652 1 12455666776 78999888876
No 97
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=24.62 E-value=5.9e+02 Score=23.88 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=36.1
Q ss_pred EEEeEEEEeecC-CCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 162 VSRMQVEIDHYP-IWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 162 V~r~~Ie~~r~p-~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
-..+.|.+.+.| .-+|-+.++++....+.-.+.-+=+|+| ++|+++|.+..
T Consensus 200 tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d-~~G~lvA~~~Q 251 (255)
T PF13622_consen 200 TLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWD-EDGRLVASSRQ 251 (255)
T ss_dssp EEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEEE
T ss_pred cceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEEC-CCCCEEEEEEE
Confidence 566777765544 4589999999887765555555667887 89999999887
No 98
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=24.33 E-value=2.3e+02 Score=24.26 Aligned_cols=28 Identities=4% Similarity=0.154 Sum_probs=24.0
Q ss_pred ceEEEEEEEecccCCCCeEEEEEEEcCC
Q 015302 306 QLSGITLEYRRECGGSDVVQSLCQPDED 333 (409)
Q Consensus 306 ~l~~i~I~Y~~E~~~gd~v~~~t~~~~~ 333 (409)
.+..+++.|++|++.||+|.+..+..+.
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~~~~ 98 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWKEGN 98 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEEeCC
Confidence 4678899999999999999998886554
No 99
>PLN02868 acyl-CoA thioesterase family protein
Probab=22.61 E-value=2.5e+02 Score=29.13 Aligned_cols=51 Identities=10% Similarity=-0.110 Sum_probs=43.8
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 161 VV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.+..+++.|.++...+..|++++.....||.+..|.-..+ ++|++++.+..
T Consensus 182 ~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~--Q~g~~~~~~~~ 232 (413)
T PLN02868 182 LVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAI--QKGKVIFTLFA 232 (413)
T ss_pred CceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEE--ECCeeEEEEee
Confidence 3567888888999998899999999999999999887776 57888888876
No 100
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=21.42 E-value=5.4e+02 Score=22.96 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=51.9
Q ss_pred EEeeecccCCCCCcCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhccCCeEEEEEEeEEEEeecCCCCCEEEEEEEEe
Q 015302 107 VVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVG 186 (409)
Q Consensus 107 ~~VR~~EvD~~g~v~~~~~l~ylQEaa~~h~~~~g~l~~Gfg~~~~m~~~gl~WVV~r~~Ie~~r~p~~gD~V~I~Twv~ 186 (409)
+-+|....=++-..-+..++-|+-|.-.-.. .+...|+ ...++.- -....|=++|+++.+|-+.-++...
T Consensus 32 vW~ra~~~~p~d~~~h~~~laY~SD~~~L~t---al~~H~~------~~~~~~v-SlDHs~wFHrpfr~ddWlLY~~~sp 101 (131)
T PF02551_consen 32 VWVRANGILPDDPRIHSCALAYASDFTLLDT---ALQPHGF------GFPKFQV-SLDHSMWFHRPFRADDWLLYAIESP 101 (131)
T ss_dssp CCCCCCSTS-TTHCCCCCHHHHHCCCCCGGG---GGCCGCC------CCCCEEE-EEEEEEEE-S--BTTS-EEEEEEEE
T ss_pred hhHHhCCCCCCchhHhHHHHHHHhHHhHHHh---hhccccc------cccccEE-ecceeEEEcCCCCCCCCEEEEEEcC
Confidence 3444444444555555566777666321111 1111122 2223333 6677888999999999999888875
Q ss_pred ee-CCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 187 AS-GKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 187 ~~-gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.. +..++.+. .+++..+|+++|.+..
T Consensus 102 ~A~~~Rgl~~G-~~f~~q~G~Lvas~~Q 128 (131)
T PF02551_consen 102 SASGGRGLVRG-RFFDTQDGELVASVVQ 128 (131)
T ss_dssp EEETTEEEEEE-CCEEECTTEEEEEEEE
T ss_pred ccccCcccccC-ceEecCCCCEEEEEec
Confidence 44 44454433 4553379999999876
No 101
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=20.38 E-value=5.2e+02 Score=24.73 Aligned_cols=52 Identities=6% Similarity=-0.120 Sum_probs=37.2
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEEeeeCCceEEEEEEEEEcCCCcEEEEEEE
Q 015302 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (409)
Q Consensus 161 VV~r~~Ie~~r~p~~gD~V~I~Twv~~~gr~~~~Rdf~I~d~~~GeviarAtS 213 (409)
.-..+.|.++++...+|-+..+++....+.-...-.=.|+| .+|+++|.+..
T Consensus 215 aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d-~~G~lvAs~~Q 266 (271)
T TIGR00189 215 ASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFT-RDGVLIASTVQ 266 (271)
T ss_pred EeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEEC-CCCCEEEEEEe
Confidence 45567788888878899999998886543222222346776 89999998876
No 102
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=20.24 E-value=5.5e+02 Score=21.94 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=23.0
Q ss_pred ceEEEEEEEecccCCCCeEEEEEEEcC
Q 015302 306 QLSGITLEYRRECGGSDVVQSLCQPDE 332 (409)
Q Consensus 306 ~l~~i~I~Y~~E~~~gd~v~~~t~~~~ 332 (409)
.+.+.++.|++|.+.||+|.+..++.+
T Consensus 69 ~~~~~~~rf~~PV~~gdtl~~~~~v~~ 95 (126)
T cd03447 69 RVRSFTASFVGMVLPNDELEVRLEHVG 95 (126)
T ss_pred eEEEEEEEEcccCcCCCEEEEEEEEEE
Confidence 456789999999999999999887654
Done!