BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015303
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 154/349 (44%), Gaps = 21/349 (6%)
Query: 8 VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
+++GAGI GL+ ++ L + GI V E+ + ++ G A +VW N K + +G+G+ +
Sbjct: 27 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 86
Query: 68 QHQQLRSIVATPTISGKPSSERSL-KVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
LR + SG+ ++ SL + + G R +L E L ++++
Sbjct: 87 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREML-DYWGRDSVQFG 145
Query: 127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSD 186
+V EE + DG+ +LI DG +S + W+ F + GY +
Sbjct: 146 KRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV----LGFTPQRRYAGYVN 201
Query: 187 FKG----SHGFEP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH-SAEL 239
+ G P + F G+G + +P Y+FF + E D A+L
Sbjct: 202 WNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 261
Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPM 299
++ G + + A LD ++R++ + + + RG V + GDA H
Sbjct: 262 SRYFAGWAPPVQKLIAA------LDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHST 313
Query: 300 TPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK 348
TPDIGQGGCAA+ED +VL + + E + + ++ ++ LK
Sbjct: 314 TPDIGQGGCAAMEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLK 362
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 21/349 (6%)
Query: 8 VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ 67
+++GAGI GL+ ++ L + GI V E+ + ++ G A +VW N K +G G+
Sbjct: 27 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXGDIXET 86
Query: 68 QHQQLRSIVATPTISGKPSSERSL-KVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYS 126
LR SG+ ++ SL + + G R +L E L ++++
Sbjct: 87 FGGPLRRXAYRDFRSGENXTQFSLAPLIERTGSRPCPVSRAELQREXL-DYWGRDSVQFG 145
Query: 127 SQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSD 186
+V EE + DG+ +LI DG +S + W+ F + GY +
Sbjct: 146 KRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV----LGFTPQRRYAGYVN 201
Query: 187 FKG----SHGFEP--NFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH-SAEL 239
+ G P + F G+G R P Y+FF + E D A+L
Sbjct: 202 WNGLVEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 261
Query: 240 KQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPM 299
++ G + + A LD ++R++ + + + RG V + GDA H
Sbjct: 262 SRYFAGWAPPVQKLIAA------LDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHST 313
Query: 300 TPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLK 348
TPDIGQGGCAA ED +VL + + E + + ++ ++ LK
Sbjct: 314 TPDIGQGGCAAXEDAVVLGAVFRQTRDIAAALREYEAQRCDRVRDLVLK 362
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 9 IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
+ G G AGLT ++ L + G + E S LR G +W N + L+ +G + + L+
Sbjct: 16 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 75
Query: 68 QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
H + + ++S + + ++ + H+ R + L I
Sbjct: 76 SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 126
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA----I 181
+S+ V+ + G L L G +L+ +++G DGV S V +GFK +V + I
Sbjct: 127 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 183
Query: 182 RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
+ HG N + F+ + R + PC++ +Y + + D +
Sbjct: 184 VPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVPID 241
Query: 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 298
L+ +V P +IE L + +Y + + + +RG V + GDA H
Sbjct: 242 LEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKAETTKLDSWTRGKVALVGDAAHA 292
Query: 299 MTPDIGQGGCAALEDGIVLARCINE 323
M P + QG A+ + L++ + E
Sbjct: 293 MCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 9 IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
+ G G AGLT ++ L + G + E S LR G +W N + L+ +G + + L+
Sbjct: 16 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 75
Query: 68 QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
H + + ++S + + ++ + H+ R + L I
Sbjct: 76 SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 126
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA----I 181
+S+ V+ + G L L G +L+ +++G DGV S V +GFK +V + I
Sbjct: 127 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 183
Query: 182 RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
+ HG N + F+ + R + PC++ +Y + + D +
Sbjct: 184 VPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVPID 241
Query: 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 298
L+ +V P +IE L + +Y + + + +RG V + GDA H
Sbjct: 242 LEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDAAHA 292
Query: 299 MTPDIGQGGCAALEDGIVLARCINE 323
M P + QG A+ + L++ + E
Sbjct: 293 MCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 135/327 (41%), Gaps = 37/327 (11%)
Query: 9 IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
+ G G AGLT ++ L + G + E S LR G +W N + L+ +G + + L+
Sbjct: 52 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 111
Query: 68 QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
H + + ++S + + ++ + H+ R + L I
Sbjct: 112 SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 162
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI---- 181
+S+ V+ + G L L G +L+ +++G DGV S V +GFK +V + +
Sbjct: 163 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 219
Query: 182 --RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236
R + HG N + F+ + R + PC++ +Y + + D
Sbjct: 220 VPRMKKEL--GHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVP 275
Query: 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDAL 296
+L+ +V P +IE L + +Y + + + +RG V + GDA
Sbjct: 276 IDLEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDAA 326
Query: 297 HPMTPDIGQGGCAALEDGIVLARCINE 323
H M P + QG A+ + L++ + E
Sbjct: 327 HAMCPALAQGAGCAMVNAFSLSQDLEE 353
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 9 IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
+ G G AGLT ++ L + G + E S LR G +W N + L+ +G + + L+
Sbjct: 16 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 75
Query: 68 QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
H + + ++S + + ++ + H+ R + L I
Sbjct: 76 SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 126
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA----I 181
+S+ V+ + G L L G +L+ +++G DGV S V +GFK +V + I
Sbjct: 127 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 183
Query: 182 RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
+ HG N + F+ + R + PC++ +Y + + D +
Sbjct: 184 VPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVPID 241
Query: 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 298
L+ +V P +IE L + +Y + + + +RG V + GDA H
Sbjct: 242 LEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKFETTKLDSWTRGKVALVGDAAHA 292
Query: 299 MTPDIGQGGCAALEDGIVLARCINE 323
M P + QG A+ + L++ + E
Sbjct: 293 MCPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 150/395 (37%), Gaps = 76/395 (19%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
DI+I GAGI GL+ +L L++ GI + +LESS +R G + A +AL +G+G +
Sbjct: 6 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65
Query: 65 LRQQH---QQLRSIVAT-PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
L +LR I + T+ +P + +Y H R + +LL + + L
Sbjct: 66 LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIH--RGELQMILLAAVRERLGQ 123
Query: 121 GTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSIVAKWLGFKNPAFV 176
+R V IEE L+ DG L VL+G DG++S V L
Sbjct: 124 QAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLS 183
Query: 177 --GRSAIRGYSDF-------------------------KGSHGFEPNFLQFFGKGLRSGF 209
G + RG ++F H E L + + S
Sbjct: 184 HGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAA 243
Query: 210 IPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLG--KLHDLPAQVKAVIEKTPLDSII 267
+ D W ++D LED + LG + DL + + +++ +D
Sbjct: 244 VGQLDNEADW-------NRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVD--- 293
Query: 268 SSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 327
R P WG RG + + GDA H M P G A+ DGI LA +
Sbjct: 294 ------RDPLP-HWG---RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR---- 339
Query: 328 KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELI 362
N V L+ Y + RR ++I
Sbjct: 340 ------------NADVAAALREYEEARRPTANKII 362
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 128/316 (40%), Gaps = 38/316 (12%)
Query: 9 IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
+ G G AGLT ++ L + G + E S LR G +W N + L+ +G + + L+
Sbjct: 52 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 111
Query: 68 QHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS--GTIRY 125
H TP +S+ + + R R L + L + I
Sbjct: 112 SH--------TPPTYETWXHNKSVSKE-TFNGLPWRIXTRSHLHDALVNRARALGVDISV 162
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI---- 181
+S+ V+ + G L L G +L+ +++G DGV S V +GFK +V + +
Sbjct: 163 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 219
Query: 182 --RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236
R + HG N + F+ + R + PC++ +Y + + D
Sbjct: 220 VPRXKKEL--GHGEWDNTIDXWNFWPRVQRILYSPCNENELY--LGLXAPAADPRGSSVP 275
Query: 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDAL 296
+L+ +V P +IE L + +Y + + + +RG V + GDA
Sbjct: 276 IDLEVWV----EXFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDAA 326
Query: 297 HPMTPDIGQG-GCAAL 311
H P + QG GCA +
Sbjct: 327 HAXCPALAQGAGCAXV 342
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 149/395 (37%), Gaps = 76/395 (19%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS 64
DI+I GAGI GL+ +L L++ GI + +LESS +R G + A +AL +G+G +
Sbjct: 6 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65
Query: 65 LRQQH---QQLRSIVAT-PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
L +LR I + T+ +P + +Y H R + +LL + + L
Sbjct: 66 LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIH--RGELQXILLAAVRERLGQ 123
Query: 121 GTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSIVAKWLGFKNPAFV 176
+R V IEE L+ DG L VL+G DG++S V L
Sbjct: 124 QAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLS 183
Query: 177 --GRSAIRGYSDF-------------------------KGSHGFEPNFLQFFGKGLRSGF 209
G + RG ++F H E L + + S
Sbjct: 184 HGGITXWRGVTEFDRFLDGKTXIVANDEHWSRLVAYPISARHAAEGKSLVNWVCXVPSAA 243
Query: 210 IPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLG--KLHDLPAQVKAVIEKTPLDSII 267
+ D W ++D LED + LG + DL + + +++ +D
Sbjct: 244 VGQLDNEADW-------NRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPXVD--- 293
Query: 268 SSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKT 327
R P WG RG + + GDA H P G A+ DGI LA +
Sbjct: 294 ------RDPLP-HWG---RGRITLLGDAAHLXYPXGANGASQAILDGIELAAALAR---- 339
Query: 328 KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELI 362
N V L+ Y + RR ++I
Sbjct: 340 ------------NADVAAALREYEEARRPTANKII 362
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 102/254 (40%), Gaps = 38/254 (14%)
Query: 95 GKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIE--ESGHFKLLHLADGTILKTK 152
GK + + R L E L K L + TI+++ V E E+G K+ ADG+
Sbjct: 99 GKIISEQRLSISRTELKEILNKGL-ANTIQWNKTFVRYEHIENGGIKIF-FADGSHENVD 156
Query: 153 VLIGCDGVNSIVAK-WLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIP 211
VL+G DG NS V K +L F VG S I G + + Q F G + +P
Sbjct: 157 VLVGADGSNSKVRKQYLPFIERFDVGVSXIIGRARL--TPALTALLPQNFRDGTPNSIVP 214
Query: 212 CD------------------------DQTIYWFFTWTSSSQDKELEDHSAE-LKQFVLGK 246
D I W + + S + D SAE L V +
Sbjct: 215 KSPDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSR 274
Query: 247 LHDLPAQVKAVIEKTPLDSIISSRLQYRQ-PQEVLWGNISRGSVCVAGDALHPMTPDIGQ 305
+ +++++ ++I S L R P + W + +V + GDA+H TP G
Sbjct: 275 XISWDPSLHTLVQQSDXENI--SPLHLRSXPHLLPWKS---STVTLLGDAIHNXTPXTGS 329
Query: 306 GGCAALEDGIVLAR 319
G AL D ++L +
Sbjct: 330 GANTALRDALLLTQ 343
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 9 IVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG-IGNSLRQ 67
+ G G AGLT ++ L + G + E S LR G +W N + L+ +G + + L+
Sbjct: 16 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQG 75
Query: 68 QH--QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
H + + ++S + + ++ + H+ R + L I
Sbjct: 76 SHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARAL---------GVDISV 126
Query: 126 SSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSA----I 181
+S+ V+ + G L L G +L+ +++G DGV S V +GFK +V + I
Sbjct: 127 NSEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLI 183
Query: 182 RGYSDFKGSHGFEPNFL---QFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238
+ HG N + F+ + R + PC++ +Y + + D +
Sbjct: 184 VPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY--LGLMAPAADPRGSSVPID 241
Query: 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHP 298
L+ +V P +IE L + +Y + + + +RG V + GDA H
Sbjct: 242 LEVWV----EMFPFLEPCLIEAAKLKTA-----RYDKYETTKLDSWTRGKVALVGDAAHA 292
Query: 299 MTPDIGQGGCAALEDGIVLARCINE 323
M P + QG A+ + L++ + E
Sbjct: 293 MAPALAQGAGCAMVNAFSLSQDLEE 317
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 91/381 (23%), Positives = 147/381 (38%), Gaps = 73/381 (19%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLE-----------------SSESLRVTGFAFTV 48
D+++VGAG+ GL+T++ L R G+R +V+E + E LR+ G A V
Sbjct: 7 DVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEV 66
Query: 49 WTNAWKALDAVGI-------------GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQG 95
+A D G G LR + +VA T P+ L Q
Sbjct: 67 ----VRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAA-TEPCTPAGWAMLS-QD 120
Query: 96 KYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEE------SGHFKLLHLADGTI- 148
K +LL K G IR+ ++++S + +G L DG
Sbjct: 121 KL---------EPILLAQARKH--GGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYD 169
Query: 149 LKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGY---SDFKGSHGFEPNFLQFF---G 202
L+ L+G DG S+V + LG + + G +D G EP ++
Sbjct: 170 LRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGI--MEPGTTGWYYLHH 227
Query: 203 KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTP 262
+ F P D + F + + ED + + ++G D P +++
Sbjct: 228 PEFKGTFGPTDRPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPELVDIQG 287
Query: 263 LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN 322
+ +++R+ R W G V +AGDA P G G AA+ DG LA +
Sbjct: 288 WE--MAARIAER------W---REGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLA 336
Query: 323 EALKTKQGVGEEDEEEFNKRV 343
L+ + G G D E ++V
Sbjct: 337 AVLQGQAGAGLLDTYEDERKV 357
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 33/322 (10%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSL 65
D++I G GI G + L R G R +V+E + R A + + ++A G+ +
Sbjct: 8 DVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEV 67
Query: 66 RQQHQQLRSIVATPTISG--KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTI 123
++ ++R + + + S+ +G + +RR L+LE + E +
Sbjct: 68 TRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRR-LVLEKIDGEATVEML 126
Query: 124 RYSS-QVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL--------GFKNPA 174
+ + V +E + L DG +L+ +V++G DG+ S V + L + +P
Sbjct: 127 FETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPM 186
Query: 175 FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED 234
VG A+ E N L +G + F P ++ + + D
Sbjct: 187 LVGTFAL-------APCVAERNRLYVDSQGGLAYFYPIGFDRARLVVSFPREEARELMAD 239
Query: 235 HSAE-LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISR---GSVC 290
E L++ + + D A+ A + T SR + + + N+ R +V
Sbjct: 240 TRGESLRRRLQRFVGDESAEAIAAVTGT-------SRFK---GIPIGYLNLDRYWADNVA 289
Query: 291 VAGDALHPMTPDIGQGGCAALE 312
+ GDA+H + P GQG A+E
Sbjct: 290 MLGDAIHNVHPITGQGMNLAIE 311
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 76/362 (20%), Positives = 143/362 (39%), Gaps = 35/362 (9%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIG 62
S +++ I+G G GLT + L + GI V E F T+ + +A+
Sbjct: 5 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA 64
Query: 63 NSLRQQHQ-QLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
L+ + L V G S +++K + ++ E + R L L L +
Sbjct: 65 GLLQTYYDLALPMGVNIADKKGNILSTKNVKPENRFDNPE---INRNDLRAILLNSLEND 121
Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
T+ + ++V +E L + ++I +G S V K++ G I
Sbjct: 122 TVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNI 181
Query: 182 RGYSDFKGSHGFEPNFLQF-FGKGLRSGF-------IPCDDQTIYWFFTWTSSSQDK--- 230
+ +D P F Q G L + P ++ +++ ++ + + K
Sbjct: 182 Q--ADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQT 239
Query: 231 --ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS 288
+ ++ ++ + F+L K D + K +I T +++R+ P E W +
Sbjct: 240 QVDFQNRNS-VVDFLLKKFSDWDERYKELIHATLSFVGLATRIF---PLEKPWKSKRPLP 295
Query: 289 VCVAGDALHPMTPDIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDE 336
+ + GDA H M P GQG + L D ++L+ I EA+K + G+E +
Sbjct: 296 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQ 355
Query: 337 EE 338
EE
Sbjct: 356 EE 357
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 144/362 (39%), Gaps = 35/362 (9%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIG 62
S +++ I+G G GLT + L + GI V E F T+ + +A+
Sbjct: 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA 84
Query: 63 NSLRQQHQ-QLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
L+ + L V +G S +++K + ++ E + R L L L +
Sbjct: 85 GLLQTYYDLALPMGVNIADAAGNILSTKNVKPENRFDNPE---INRNDLRAILLNSLEND 141
Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
T+ + ++V +E L + ++I +G S V K++ G I
Sbjct: 142 TVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNI 201
Query: 182 RGYSDFKGSHGFEPNFLQF-FGKGLRSGF-------IPCDDQTIYWFFTWTSSSQDK--- 230
+ +D P F Q G L + P ++ +++ ++ + + K
Sbjct: 202 Q--ADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQT 259
Query: 231 --ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS 288
+ ++ ++ + F+L + D + K +I T +++R+ P E W +
Sbjct: 260 QVDFQNRNS-VVDFLLKEFSDWDERYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLP 315
Query: 289 VCVAGDALHPMTPDIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDE 336
+ + GDA H M P GQG + L D ++L+ I EA+K + G+E +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQ 375
Query: 337 EE 338
EE
Sbjct: 376 EE 377
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV 48
D+V++G GI+GL+ + L G+ +VLE+ + RV G +T+
Sbjct: 15 DVVVIGGGISGLSAAKLLTEYGVSVLVLEARD--RVGGRTYTI 55
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV 48
D+V++G GI+GL+ + L G+ +VLE+ + RV G +T+
Sbjct: 4 DVVVIGGGISGLSAAKLLTEYGVSVLVLEARD--RVGGRTYTI 44
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTV 48
D+V++G GI+GL+ + L G+ +VLE+ + RV G +T+
Sbjct: 4 DVVVIGGGISGLSAAKLLTEYGVSVLVLEARD--RVGGRTYTI 44
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT 47
D+VIVGAG +GLT + L + G+ VLE+ + RV G +T
Sbjct: 9 DVVIVGAGPSGLTAARELKKAGLSVAVLEARD--RVGGRTWT 48
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 143/362 (39%), Gaps = 35/362 (9%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIG 62
S +++ I+G G GLT + L + GI V E F T+ + +A+
Sbjct: 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA 84
Query: 63 NSLRQQHQ-QLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
L+ + L V G S +++K + ++ E + R L L L +
Sbjct: 85 GLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPE---INRNDLRAILLNSLEND 141
Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
T+ + ++V +E L + ++I +G S V K++ G I
Sbjct: 142 TVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNI 201
Query: 182 RGYSDFKGSHGFEPNFLQF-FGKGLRSGF-------IPCDDQTIYWFFTWTSSSQDK--- 230
+ +D P F Q G L + P ++ +++ ++ + + K
Sbjct: 202 Q--ADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQT 259
Query: 231 --ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS 288
+ ++ ++ + F+L + D + K +I T +++R+ P E W +
Sbjct: 260 QVDFQNRNS-VVDFLLKEFSDWDERYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLP 315
Query: 289 VCVAGDALHPMTPDIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDE 336
+ + GDA H M P GQG + L D ++L+ I EA+K + G+E +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQ 375
Query: 337 EE 338
EE
Sbjct: 376 EE 377
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 143/362 (39%), Gaps = 35/362 (9%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIG 62
S +++ I+G G GLT + L + GI V E F T+ + +A+
Sbjct: 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA 84
Query: 63 NSLRQQHQ-QLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
L+ + L V G S +++K + ++ E + R L L L +
Sbjct: 85 GLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPE---INRNDLRAILLNSLEND 141
Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
T+ + ++V +E L + ++I +G S V K++ G I
Sbjct: 142 TVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNI 201
Query: 182 RGYSDFKGSHGFEPNFLQF-FGKGLRSGF-------IPCDDQTIYWFFTWTSSSQDK--- 230
+ +D P F Q G L + P ++ +++ ++ + + K
Sbjct: 202 Q--ADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQT 259
Query: 231 --ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS 288
+ ++ ++ + F+L + D + K +I T +++R+ P E W +
Sbjct: 260 QVDFQNRNS-VVDFLLKEFSDWDKRYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLP 315
Query: 289 VCVAGDALHPMTPDIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDE 336
+ + GDA H M P GQG + L D ++L+ I EA+K + G+E +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQ 375
Query: 337 EE 338
EE
Sbjct: 376 EE 377
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG 60
D+V++G GI+GL + L I +VLE+ + RV G +TV K +D G
Sbjct: 23 DVVVIGGGISGLAAAKLLSEYKINVLVLEARD--RVGGRTYTVRNEHVKWVDVGG 75
>pdb|3GD5|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|D Chain D, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|E Chain E, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
pdb|3GD5|F Chain F, Crystal Structure Of Ornithine Carbamoyltransferase From
Gloeobacter Violaceus
Length = 323
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 138 FKLLHLADGTILKTKVLIGCD--GVNSIVAKWLGF-KNPAFVGRSAIRGYSDFKGSHGFE 194
KL ++ DG + +L+GC G++ VA GF +PA R+ S+ G G E
Sbjct: 158 LKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARA-----SEIAGRTGAE 212
Query: 195 PNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQF 242
LR F I + WTS Q+ E + +Q+
Sbjct: 213 VQI-------LRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQY 253
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL------RVTGFAFTVWTNAWK 54
M +VE +VG G GL L+ LGI++ +LE ++ + + GFA +
Sbjct: 148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGV 207
Query: 55 ALDAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLK 92
L +G +L + Q+++ VA+ +G+ ++ + +K
Sbjct: 208 DLR---LGTALSEVSYQVQTHVASDA-AGEDTAHQHIK 241
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT 47
D+ IVGAGI+GL + L + G+ V+E+ + RV G +T
Sbjct: 7 DVAIVGAGISGLAAATALRKAGLSVAVIEARD--RVGGRTWT 46
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 73/184 (39%), Gaps = 23/184 (12%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLE--SSESLRVTGFAFTVWT----NAWKALDAVG 60
+++VGAG AGL + L G+ MVLE + G FT T + L A G
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFG 74
Query: 61 IGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS 120
+ Q H G+P L+ YG + + +LE A +
Sbjct: 75 PVETSTQGH-----------FGGRPVDFGVLE-GAHYGVKAVPQSTTESVLEEWALGRGA 122
Query: 121 GTIRYSSQVVSIEESGHFKL-LHLADGT-ILKTKVLIGCDGVNSIVAKWLGFKNPAFVGR 178
+R + +E H + + DG L T+ ++GCDG S V K GF F G
Sbjct: 123 ELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFD---FPGT 179
Query: 179 SAIR 182
SA R
Sbjct: 180 SASR 183
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 140/362 (38%), Gaps = 35/362 (9%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIG 62
S +++ I+G G GLT + L + GI V E F T+ + +A
Sbjct: 5 SDKNVAIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAXKKA 64
Query: 63 NSLRQQHQ-QLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
L+ + L V G S +++K + ++ E + R L L L +
Sbjct: 65 GLLQTYYDLALPXGVNIADKKGNILSTKNVKPENRFDNPE---INRNDLRAILLNSLEND 121
Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
T+ + ++V +E L + ++I +G S V K++ G I
Sbjct: 122 TVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKVRKFVTDTEVEETGTFNI 181
Query: 182 RGYSDFKGSHGFEPNFLQF-FGKGLRSGF-------IPCDDQTIYWFFTWTSSSQDK--- 230
+ +D P F Q G L + P ++ +++ ++ + + K
Sbjct: 182 Q--ADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNNNGALHFGISFKTPDEWKNQT 239
Query: 231 --ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS 288
+ ++ ++ + F+L K D + K +I T +++R+ P E W +
Sbjct: 240 QVDFQNRNS-VVDFLLKKFSDWDERYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLP 295
Query: 289 VCVAGDALHPMTPDIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDE 336
+ GDA H P GQG + L D ++L+ I EA+K + G+E +
Sbjct: 296 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQXFIYGKEAQ 355
Query: 337 EE 338
EE
Sbjct: 356 EE 357
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37
+VIVGAG+AGL+ + L G + VLE+SE
Sbjct: 36 VVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66
>pdb|2JHN|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHN|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
+ P SER++ V+G + E VRRK L+E L + P R+
Sbjct: 47 AVMAYPESERTIVVEGNFENREWEAVRRK-LVEYLGLQNPEELYRF 91
>pdb|2JHJ|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHJ|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRY 125
+ P SER++ V+G + E VRRK L+E L + P R+
Sbjct: 47 AVMAYPESERTIVVEGNFENREWEAVRRK-LVEYLGLQNPEELYRF 91
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38
D+++VG G +GL+ +L L R G++ +VL+ S
Sbjct: 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS 35
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37
+VIVGAG++GL+ + L G + VLE+SE
Sbjct: 49 VVIVGAGMSGLSAAYVLANAGHQVTVLEASE 79
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKAL 56
M+SV D+V++G G +GL+ L R G+ ++L++ S G A W +AW +L
Sbjct: 1 MDSV-DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS---PGGA---WQHAWHSL 49
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRS-MVLESSESLRVTGFAFTV 48
++I+GAGIAGL + L++ GI+ +VLE+ + RV G TV
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGGRLQTV 51
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRS-MVLESSESLRVTGFAFTV 48
++I+GAGIAGL + L++ GI+ +VLE+ + RV G TV
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGGRLQTV 51
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRS-MVLESSESLRVTGFAFTV 48
++I+GAGIAGL + L++ GI+ +VLE+ + RV G TV
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGGRLQTV 51
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRS-MVLESSESLRVTGFAFTV 48
++I+GAGIAGL + L++ GI+ +VLE+ + RV G TV
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGGRLQTV 51
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRS-MVLESSESLRVTGFAFTV 48
++I+GAGIAGL + L++ GI+ +VLE+ + RV G TV
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGGRLQTV 51
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 23/98 (23%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLES-------SESLRVTGFAFTV---W-----T 50
D++++G G GLT + L G ++++LE+ S S + G+ + + W +
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQS 100
Query: 51 NAWKALDAVGIGNSLRQ--------QHQQLRSIVATPT 80
+ W+ + + N+L H QLR+ T T
Sbjct: 101 HVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTST 138
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLES-------SESLRVTGFAFTV---W-----T 50
D++++G G GLT + L G ++++LE+ S S + G+ + + W +
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQS 100
Query: 51 NAWKALDAVGIGNSLRQ--------QHQQLRSIVATPTISGKPSSERSLK 92
+ W+ + + N+L H QLR+ T T + + L+
Sbjct: 101 HVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLR 150
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLES-------SESLRVTGFAFTV---W-----T 50
D++++G G GLT + L G ++++LE+ S S + G+ + + W +
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQS 100
Query: 51 NAWKALDAVGIGNSLRQ--------QHQQLRSIVATPTISGKPSSERSLK 92
+ W+ + + N+L H QLR+ T T + + L+
Sbjct: 101 HVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLR 150
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 111 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 158
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 159 KS--FRENMSDFLESGL 173
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 129 VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFK 188
V+ I ES H GT K + +G D P F GR+AI YSD+
Sbjct: 107 VLDIGESNHDIFYTNRSGTRNKEYLTVGVD------------NEPIFHGRTAIEIYSDYM 154
Query: 189 GSHGFEPNFLQFFGKGL 205
S F N F GL
Sbjct: 155 KS--FRENMSDFLESGL 169
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37
+V+VGAG++GL+ + L G + VLE+SE
Sbjct: 36 VVVVGAGMSGLSAAYVLAGAGHKVTVLEASE 66
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL------RVTGFAFTVWTNAWKAL 56
+VE +VG G GL L+ LGI++ +LE ++ + GFA + L
Sbjct: 150 NVEHATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDREXAGFAHQAIRDQGVDL 209
Query: 57 DAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLK 92
+G +L + Q+++ VA+ +G+ ++ + +K
Sbjct: 210 R---LGTALSEVSYQVQTHVASDA-AGEDTAHQHIK 241
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT 47
D+ IVGAG +GL + L + G+ V+E+ + RV G +T
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RVGGRTWT 46
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 140/362 (38%), Gaps = 35/362 (9%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIG 62
S +++ I+G G GLT + L + GI V E F T+ + +A
Sbjct: 26 SDKNVAIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAXKKA 85
Query: 63 NSLRQQHQ-QLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSG 121
L+ + L V G S +++K + ++ E + R L L L +
Sbjct: 86 GLLQTYYDLALPXGVNIADEKGNILSTKNVKPENRFDNPE---INRNDLRAILLNSLEND 142
Query: 122 TIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAI 181
T+ + ++V +E L + ++I +G S V K++ G I
Sbjct: 143 TVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKVRKFVTDTEVEETGTFNI 202
Query: 182 RGYSDFKGSHGFEPNFLQF-FGKGLRSGF-------IPCDDQTIYWFFTWTSSSQDK--- 230
+ +D P F Q G L + P ++ +++ ++ + + K
Sbjct: 203 Q--ADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNNNGALHFGISFKTPDEWKNQT 260
Query: 231 --ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS 288
+ ++ ++ + F+L + D + K +I T +++R+ P E W +
Sbjct: 261 QVDFQNRNS-VVDFLLKEFSDWDERYKELIHTTLSFVGLATRIF---PLEKPWKSKRPLP 316
Query: 289 VCVAGDALHPMTPDIGQGGCAALEDGIVLA--------RCINEALKTKQG----VGEEDE 336
+ GDA H P GQG + L D ++L+ I EA+K + G+E +
Sbjct: 317 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQXFIYGKEAQ 376
Query: 337 EE 338
EE
Sbjct: 377 EE 378
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT 47
D+ IVGAG +GL + L + G+ V+E+ + RV G +T
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RVGGRTWT 46
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL------RVTGFAFTVWTNAWKAL 56
+VE +VG G GL L+ LGI++ +LE ++ + GFA + L
Sbjct: 150 NVEHATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDREXAGFAHQAIRDQGVDL 209
Query: 57 DAVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLK 92
+G +L + Q+++ VA+ +G+ ++ + +K
Sbjct: 210 R---LGTALSEVSYQVQTHVASDA-AGEDTAHQHIK 241
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT 47
D+ IVGAG +GL + L + G+ V+E+ + RV G +T
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RVGGRTWT 46
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 22/187 (11%)
Query: 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLE-SSESLRVTGFAFTVWTNAWKALDAVGI 61
+ + I +VG I+GLT +L L G+ V E S + L G V L G+
Sbjct: 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGV 63
Query: 62 ---GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL 118
S+ + + + P+ R YG L E E
Sbjct: 64 ELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGG----------LYELFGPE- 112
Query: 119 PSGTIRYSSQ--VVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAFV 176
RY + +V + + + +DGT + +IG DG S+V K L P +
Sbjct: 113 -----RYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYA 167
Query: 177 GRSAIRG 183
G RG
Sbjct: 168 GYVTWRG 174
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37
+V+VGAG++GL+ + L G + VLE+SE
Sbjct: 36 VVVVGAGMSGLSAAYVLSGAGHQVTVLEASE 66
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 29/171 (16%)
Query: 9 IVGAGIAGLTTSLGLYRLGI-RSMVL----------ESSESLRVTGFAFTVWTNAWKALD 57
IVG+G+ G T+ L LG+ R +VL + + L T FA VW A D
Sbjct: 5 IVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGD 64
Query: 58 AVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE 117
G R++V ++ +P R L++ + + + V R L +
Sbjct: 65 LEGA-----------RAVVLAAGVAQRPGETR-LQLLDRNAQVFAQVVPRVL------EA 106
Query: 118 LPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL 168
P + ++ V + ++L L G ++ + ++ +++A++L
Sbjct: 107 APEAVLLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYL 157
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 29/171 (16%)
Query: 9 IVGAGIAGLTTSLGLYRLGI-RSMVL----------ESSESLRVTGFAFTVWTNAWKALD 57
IVG+G+ G T+ L LG+ R +VL + + L T FA VW A D
Sbjct: 5 IVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGD 64
Query: 58 AVGIGNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE 117
G R++V ++ +P R L++ + + + V R L +
Sbjct: 65 LEGA-----------RAVVLAAGVAQRPGETR-LQLLDRNAQVFAQVVPRVL------EA 106
Query: 118 LPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL 168
P + ++ V + ++L L G ++ + ++ +++A++L
Sbjct: 107 APEAVLLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYL 157
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG 43
D+++VGAG G+ L + G+++++++S + G
Sbjct: 5 DVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNG 42
>pdb|2FQW|A Chain A, Pnra From Treponema Pallidum As Purified From E. Coli
(Bound To Inosine)
pdb|2FQX|A Chain A, Pnra From Treponema Pallidum Complexed With Guanosine
pdb|2FQY|A Chain A, Pnra From Treponema Pallidum Complexed With Adenosine
Length = 318
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 332 GEEDEEEFNKRVEMGLKRYAKERRWRC 358
G+ D++ FN++V G+ R+A+E +C
Sbjct: 14 GDIDDKSFNQQVWEGISRFAQENNAKC 40
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 22/114 (19%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLE----------SSESLRVTGFAFTVWTNAWKA 55
D+VI+G G AGLT ++ R + +++LE S E GF +
Sbjct: 10 DVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFP--------EP 61
Query: 56 LDAVGIGNSLRQQHQQLRSIVATPTISG----KPSSERSLKVQGKYGEHEMRCV 105
+ + + + QQ ++ + V + G S V+G GE+ + V
Sbjct: 62 IAGMELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAV 115
>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
Length = 304
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 294 DALHPMTPDIGQGGCAALEDGIV--LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYA 351
D P+T + Q L G R N+ +K + G +D + K VE
Sbjct: 89 DEAEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEV 148
Query: 352 KERR---W-RCFELISIAYLVGSIQQSDGKI 378
E W RC EL I ++G I++ +GKI
Sbjct: 149 IEYNAVFWERCTELQDIERIMGQIERGEGKI 179
>pdb|4AT0|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
Dehydrogenase From Rhodococcus Jostii Rha1
pdb|4AT2|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
Dehydrogenase From Rhodococcus Jostii Rha1 In Complex
With 4-Androstene-3,17- Dione
Length = 510
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36
D+V+ G GIAG+ S+ R G +VLE +
Sbjct: 43 DVVVAGYGIAGVAASIEAARAGADVLVLERT 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,082,722
Number of Sequences: 62578
Number of extensions: 499806
Number of successful extensions: 1619
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 128
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)