Query 015303
Match_columns 409
No_of_seqs 208 out of 2030
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06753 hypothetical protein; 100.0 4.4E-47 9.4E-52 355.3 38.6 359 5-395 1-361 (373)
2 COG0654 UbiH 2-polyprenyl-6-me 100.0 4.7E-47 1E-51 354.9 34.9 359 4-389 2-367 (387)
3 PRK07588 hypothetical protein; 100.0 2.4E-46 5.3E-51 352.0 37.1 363 5-391 1-368 (391)
4 PRK06475 salicylate hydroxylas 100.0 4.5E-46 9.8E-51 350.6 36.8 366 5-395 3-382 (400)
5 PRK08850 2-octaprenyl-6-methox 100.0 2.5E-46 5.4E-51 353.1 34.3 362 1-389 1-374 (405)
6 PRK08013 oxidoreductase; Provi 100.0 2.6E-46 5.6E-51 352.0 32.9 359 3-389 2-374 (400)
7 KOG2614 Kynurenine 3-monooxyge 100.0 1.1E-46 2.4E-51 331.5 28.2 399 5-406 3-411 (420)
8 PRK08163 salicylate hydroxylas 100.0 1.6E-45 3.4E-50 347.6 37.5 379 1-403 1-386 (396)
9 PRK05868 hypothetical protein; 100.0 2.9E-45 6.4E-50 340.5 36.9 359 5-388 2-368 (372)
10 PRK06617 2-octaprenyl-6-methox 100.0 8.2E-46 1.8E-50 345.5 32.2 346 5-389 2-355 (374)
11 TIGR01989 COQ6 Ubiquinone bios 100.0 2.9E-45 6.4E-50 348.0 33.9 366 5-391 1-427 (437)
12 PRK06847 hypothetical protein; 100.0 3E-44 6.4E-49 336.5 39.1 363 1-390 1-372 (375)
13 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.2E-44 2.6E-49 352.4 37.0 359 3-389 9-375 (538)
14 PRK07364 2-octaprenyl-6-methox 100.0 4.5E-45 9.6E-50 346.6 32.5 360 3-389 17-386 (415)
15 PRK07333 2-octaprenyl-6-methox 100.0 7.9E-45 1.7E-49 343.7 33.3 362 5-389 2-372 (403)
16 PRK05714 2-octaprenyl-3-methyl 100.0 6.9E-45 1.5E-49 343.7 32.7 359 4-389 2-377 (405)
17 TIGR03219 salicylate_mono sali 100.0 2.7E-44 5.9E-49 340.2 34.4 357 5-383 1-384 (414)
18 PRK09126 hypothetical protein; 100.0 8.7E-45 1.9E-49 342.0 30.2 363 1-390 1-373 (392)
19 PRK08773 2-octaprenyl-3-methyl 100.0 2.2E-44 4.7E-49 338.9 32.2 363 3-392 5-377 (392)
20 PRK07045 putative monooxygenas 100.0 1.5E-43 3.2E-48 332.8 37.6 363 1-388 1-374 (388)
21 PRK07494 2-octaprenyl-6-methox 100.0 2.1E-44 4.4E-49 338.9 31.1 358 2-389 5-369 (388)
22 PRK08849 2-octaprenyl-3-methyl 100.0 6.8E-44 1.5E-48 334.0 32.8 354 4-390 3-367 (384)
23 PRK06185 hypothetical protein; 100.0 2.3E-43 4.9E-48 333.9 34.8 360 3-389 5-376 (407)
24 PRK08244 hypothetical protein; 100.0 5.8E-43 1.3E-47 337.9 36.3 350 4-387 2-358 (493)
25 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.2E-43 4.7E-48 331.5 30.7 356 6-390 1-366 (382)
26 TIGR01988 Ubi-OHases Ubiquinon 100.0 5.4E-43 1.2E-47 329.6 32.1 359 6-390 1-369 (385)
27 PRK07538 hypothetical protein; 100.0 2.2E-42 4.8E-47 326.9 36.2 337 5-367 1-361 (413)
28 PLN02927 antheraxanthin epoxid 100.0 4.2E-42 9E-47 331.1 38.4 372 3-387 80-468 (668)
29 PTZ00367 squalene epoxidase; P 100.0 4.3E-42 9.3E-47 330.0 38.1 376 3-408 32-454 (567)
30 PLN02985 squalene monooxygenas 100.0 8.5E-42 1.8E-46 326.9 38.0 381 4-408 43-440 (514)
31 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2.1E-42 4.5E-47 325.6 33.0 359 3-390 4-374 (391)
32 PRK07236 hypothetical protein; 100.0 5.4E-42 1.2E-46 321.6 35.2 338 3-373 5-376 (386)
33 PRK06834 hypothetical protein; 100.0 7.7E-42 1.7E-46 326.6 36.9 345 3-388 2-352 (488)
34 PRK08294 phenol 2-monooxygenas 100.0 4.4E-42 9.5E-47 336.8 35.7 351 1-376 29-416 (634)
35 PRK06184 hypothetical protein; 100.0 2.9E-42 6.3E-47 333.5 32.8 340 3-373 2-353 (502)
36 PRK06996 hypothetical protein; 100.0 3E-42 6.6E-47 324.2 31.2 351 3-389 10-377 (398)
37 PRK07608 ubiquinone biosynthes 100.0 7.4E-42 1.6E-46 321.8 33.4 359 3-390 4-372 (388)
38 PRK08132 FAD-dependent oxidore 100.0 2.9E-41 6.3E-46 329.7 38.2 356 3-388 22-387 (547)
39 PRK07190 hypothetical protein; 100.0 2.3E-41 5E-46 322.9 35.7 339 3-373 4-348 (487)
40 PRK05732 2-octaprenyl-6-methox 100.0 1.1E-41 2.5E-46 321.4 33.1 364 2-391 1-376 (395)
41 PRK08243 4-hydroxybenzoate 3-m 100.0 1.7E-41 3.7E-46 318.6 34.0 359 4-393 2-374 (392)
42 PF01494 FAD_binding_3: FAD bi 100.0 2.2E-42 4.9E-47 322.1 25.5 336 4-364 1-355 (356)
43 PRK06126 hypothetical protein; 100.0 3.1E-40 6.7E-45 322.8 36.7 342 3-373 6-376 (545)
44 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 3.4E-40 7.4E-45 308.7 35.2 356 4-391 2-372 (390)
45 TIGR02023 BchP-ChlP geranylger 100.0 5.5E-34 1.2E-38 267.2 34.4 321 5-374 1-337 (388)
46 PLN00093 geranylgeranyl diphos 100.0 6.2E-34 1.4E-38 268.6 34.3 334 3-379 38-391 (450)
47 TIGR02032 GG-red-SF geranylger 100.0 1E-33 2.2E-38 256.8 29.0 288 5-321 1-295 (295)
48 PRK11445 putative oxidoreducta 100.0 1.1E-33 2.5E-38 261.2 29.7 329 5-389 2-342 (351)
49 TIGR02028 ChlP geranylgeranyl 100.0 7.1E-33 1.5E-37 259.4 31.9 332 5-379 1-352 (398)
50 COG0644 FixC Dehydrogenases (f 100.0 9.3E-32 2E-36 252.2 30.5 325 3-369 2-336 (396)
51 PRK08255 salicylyl-CoA 5-hydro 100.0 2.5E-32 5.3E-37 274.3 25.5 324 6-376 2-343 (765)
52 KOG1298 Squalene monooxygenase 100.0 1.4E-30 3.1E-35 225.6 27.8 381 4-407 45-439 (509)
53 PRK10015 oxidoreductase; Provi 100.0 1.4E-30 3E-35 245.7 30.3 346 1-374 1-373 (429)
54 KOG3855 Monooxygenase involved 100.0 2.9E-31 6.3E-36 232.3 19.7 369 4-388 36-461 (481)
55 PRK10157 putative oxidoreducta 100.0 2.8E-29 6.1E-34 237.2 32.0 342 1-373 1-371 (428)
56 TIGR01790 carotene-cycl lycope 100.0 1.1E-28 2.3E-33 232.3 31.6 304 6-360 1-321 (388)
57 PLN02697 lycopene epsilon cycl 100.0 4.6E-28 9.9E-33 230.7 31.1 319 4-364 108-446 (529)
58 PLN02463 lycopene beta cyclase 100.0 1.3E-27 2.8E-32 224.5 31.8 287 4-328 28-335 (447)
59 TIGR01789 lycopene_cycl lycope 100.0 3E-26 6.5E-31 211.9 24.2 304 6-364 1-313 (370)
60 PF04820 Trp_halogenase: Trypt 99.9 1E-25 2.2E-30 213.1 23.5 323 6-371 1-384 (454)
61 PF05834 Lycopene_cycl: Lycope 99.9 6.2E-24 1.4E-28 197.5 27.0 277 6-323 1-290 (374)
62 PF08491 SE: Squalene epoxidas 99.9 9.3E-22 2E-26 168.0 22.1 237 151-407 2-242 (276)
63 COG2081 Predicted flavoprotein 99.6 1.7E-15 3.7E-20 134.6 12.8 157 2-173 1-189 (408)
64 PRK04176 ribulose-1,5-biphosph 99.6 1.2E-14 2.6E-19 127.3 13.4 135 4-170 25-181 (257)
65 TIGR00292 thiazole biosynthesi 99.6 5.9E-14 1.3E-18 122.5 15.4 133 4-168 21-176 (254)
66 PRK11259 solA N-methyltryptoph 99.6 5.4E-13 1.2E-17 125.3 23.0 59 104-163 145-205 (376)
67 TIGR01377 soxA_mon sarcosine o 99.6 1.5E-12 3.3E-17 122.4 25.0 69 104-173 141-212 (380)
68 PF01266 DAO: FAD dependent ox 99.5 1.8E-13 3.9E-18 127.5 16.4 69 102-171 141-213 (358)
69 KOG2415 Electron transfer flav 99.5 8.1E-12 1.8E-16 110.8 25.1 304 4-328 76-425 (621)
70 PRK12266 glpD glycerol-3-phosp 99.5 1.3E-12 2.9E-17 126.4 22.0 163 1-163 3-217 (508)
71 PF01946 Thi4: Thi4 family; PD 99.5 2.6E-13 5.6E-18 111.2 13.5 129 4-164 17-167 (230)
72 PRK13369 glycerol-3-phosphate 99.5 3.8E-12 8.2E-17 123.3 24.0 163 1-163 3-216 (502)
73 PRK12409 D-amino acid dehydrog 99.5 3.4E-12 7.4E-17 121.1 22.2 67 105-171 194-268 (410)
74 COG1635 THI4 Ribulose 1,5-bisp 99.5 9.9E-13 2.1E-17 107.0 14.6 132 5-168 31-184 (262)
75 PRK01747 mnmC bifunctional tRN 99.5 3.1E-12 6.7E-17 128.2 21.4 60 104-163 404-464 (662)
76 PF03486 HI0933_like: HI0933-l 99.5 1.7E-13 3.8E-18 127.4 11.1 138 5-162 1-166 (409)
77 PRK00711 D-amino acid dehydrog 99.4 5.1E-11 1.1E-15 113.4 24.3 68 104-172 197-268 (416)
78 COG0579 Predicted dehydrogenas 99.4 1.6E-11 3.5E-16 113.1 19.5 165 3-172 2-222 (429)
79 TIGR01373 soxB sarcosine oxida 99.4 7.6E-11 1.7E-15 111.8 24.9 69 104-173 179-252 (407)
80 PRK05192 tRNA uridine 5-carbox 99.4 2E-12 4.3E-17 124.1 14.0 146 1-162 1-157 (618)
81 PRK11728 hydroxyglutarate oxid 99.4 2.6E-11 5.6E-16 114.3 20.7 68 103-171 144-214 (393)
82 PF13738 Pyr_redox_3: Pyridine 99.4 1.8E-12 3.9E-17 110.6 10.2 136 8-163 1-139 (203)
83 PLN02172 flavin-containing mon 99.4 2.6E-12 5.5E-17 122.2 12.2 151 2-162 8-173 (461)
84 TIGR03329 Phn_aa_oxid putative 99.4 2.5E-11 5.5E-16 116.5 17.1 59 103-163 178-238 (460)
85 TIGR00562 proto_IX_ox protopor 99.3 1.7E-09 3.6E-14 104.5 28.6 50 113-162 230-279 (462)
86 COG3380 Predicted NAD/FAD-depe 99.3 6.2E-11 1.3E-15 99.7 15.5 141 6-161 3-159 (331)
87 PRK07233 hypothetical protein; 99.3 9.4E-10 2E-14 105.4 25.1 59 109-168 199-259 (434)
88 KOG1399 Flavin-containing mono 99.3 1.5E-11 3.3E-16 114.8 12.2 140 2-161 4-152 (448)
89 PRK11883 protoporphyrinogen ox 99.3 7.1E-10 1.5E-14 106.8 24.3 56 109-164 222-277 (451)
90 COG0665 DadA Glycine/D-amino a 99.3 4.4E-10 9.6E-15 106.0 22.4 61 104-165 152-215 (387)
91 COG0578 GlpA Glycerol-3-phosph 99.3 3.6E-10 7.9E-15 106.5 19.8 209 3-216 11-282 (532)
92 PLN02464 glycerol-3-phosphate 99.3 6E-10 1.3E-14 110.2 21.7 66 104-169 228-304 (627)
93 PRK13339 malate:quinone oxidor 99.3 1.1E-10 2.4E-15 111.2 15.8 70 103-172 179-258 (497)
94 PRK05257 malate:quinone oxidor 99.3 2.2E-10 4.7E-15 109.9 17.8 70 103-172 178-257 (494)
95 PRK12416 protoporphyrinogen ox 99.3 2.6E-09 5.6E-14 103.1 25.4 59 109-168 227-285 (463)
96 PF01134 GIDA: Glucose inhibit 99.3 6.7E-11 1.5E-15 107.8 13.2 140 6-160 1-150 (392)
97 KOG2820 FAD-dependent oxidored 99.2 3.5E-10 7.5E-15 98.2 15.4 172 1-173 4-225 (399)
98 PLN02568 polyamine oxidase 99.2 1.5E-09 3.2E-14 105.3 21.8 53 108-160 242-294 (539)
99 PTZ00383 malate:quinone oxidor 99.2 1.5E-10 3.3E-15 110.6 14.4 67 103-170 206-282 (497)
100 COG2072 TrkA Predicted flavopr 99.2 2.3E-10 4.9E-15 108.5 15.2 134 2-162 6-144 (443)
101 PF12831 FAD_oxidored: FAD dep 99.2 5E-12 1.1E-16 119.9 3.6 150 6-171 1-158 (428)
102 TIGR01320 mal_quin_oxido malat 99.2 4.3E-10 9.3E-15 107.8 16.5 71 102-172 172-251 (483)
103 TIGR00275 flavoprotein, HI0933 99.2 4.9E-11 1.1E-15 112.1 8.5 156 8-171 1-180 (400)
104 PLN02612 phytoene desaturase 99.2 7.4E-09 1.6E-13 101.6 23.7 61 4-64 93-169 (567)
105 PRK11101 glpA sn-glycerol-3-ph 99.2 2.2E-10 4.8E-15 111.9 12.2 68 104-171 145-221 (546)
106 TIGR01292 TRX_reduct thioredox 99.2 4.7E-10 1E-14 101.9 13.2 110 5-162 1-112 (300)
107 PF00743 FMO-like: Flavin-bind 99.2 1.6E-10 3.5E-15 111.5 10.4 137 5-162 2-150 (531)
108 PLN02268 probable polyamine ox 99.1 6.6E-10 1.4E-14 106.3 14.0 41 120-160 210-250 (435)
109 TIGR02734 crtI_fam phytoene de 99.1 9.6E-09 2.1E-13 100.2 22.1 61 108-168 219-282 (502)
110 COG0492 TrxB Thioredoxin reduc 99.1 8.7E-10 1.9E-14 98.5 13.1 112 3-163 2-116 (305)
111 PLN02576 protoporphyrinogen ox 99.1 2.5E-08 5.5E-13 97.2 24.4 37 3-39 11-48 (496)
112 PLN02661 Putative thiazole syn 99.1 9.6E-10 2.1E-14 98.8 12.8 128 4-163 92-245 (357)
113 PRK08274 tricarballylate dehyd 99.1 6.3E-10 1.4E-14 107.3 12.3 38 1-38 1-38 (466)
114 TIGR03364 HpnW_proposed FAD de 99.1 9.8E-10 2.1E-14 102.7 13.1 55 104-163 141-198 (365)
115 TIGR02730 carot_isom carotene 99.1 1.3E-08 2.8E-13 98.9 21.2 62 108-169 229-293 (493)
116 KOG2844 Dimethylglycine dehydr 99.1 4.2E-09 9.1E-14 99.2 16.2 87 102-189 181-271 (856)
117 PRK15317 alkyl hydroperoxide r 99.1 1.3E-09 2.9E-14 106.1 13.6 110 4-162 211-322 (517)
118 PLN02676 polyamine oxidase 99.1 3.5E-08 7.7E-13 95.0 22.6 56 107-162 223-286 (487)
119 TIGR03140 AhpF alkyl hydropero 99.1 2.4E-09 5.2E-14 104.2 13.9 110 4-162 212-323 (515)
120 COG1231 Monoamine oxidase [Ami 99.1 3E-07 6.5E-12 84.1 25.9 201 120-326 220-448 (450)
121 TIGR00136 gidA glucose-inhibit 99.1 2.3E-09 5E-14 103.1 13.0 143 5-162 1-154 (617)
122 PRK06481 fumarate reductase fl 99.0 5.8E-09 1.3E-13 101.2 15.7 37 3-39 60-96 (506)
123 PF13454 NAD_binding_9: FAD-NA 99.0 4.7E-09 1E-13 85.1 12.5 140 8-160 1-155 (156)
124 PLN02487 zeta-carotene desatur 99.0 1.4E-07 3.1E-12 91.7 24.7 61 5-65 76-152 (569)
125 COG1232 HemY Protoporphyrinoge 99.0 6.8E-08 1.5E-12 90.1 21.5 61 6-66 2-79 (444)
126 PLN02328 lysine-specific histo 99.0 4.8E-08 1E-12 97.6 21.7 36 4-39 238-273 (808)
127 PLN02529 lysine-specific histo 99.0 3.8E-08 8.1E-13 97.8 20.7 35 4-38 160-194 (738)
128 PRK06467 dihydrolipoamide dehy 99.0 2.3E-09 5E-14 103.2 11.8 38 1-38 1-38 (471)
129 TIGR03143 AhpF_homolog putativ 99.0 3.3E-09 7.2E-14 104.0 13.2 113 1-163 1-115 (555)
130 PLN02976 amine oxidase 99.0 1.5E-07 3.2E-12 97.5 24.9 36 4-39 693-728 (1713)
131 PRK05976 dihydrolipoamide dehy 99.0 3.3E-09 7.2E-14 102.4 11.8 36 1-36 1-36 (472)
132 TIGR02731 phytoene_desat phyto 99.0 1E-07 2.2E-12 91.7 22.0 59 6-64 1-75 (453)
133 PLN03000 amine oxidase 99.0 1.4E-07 3.1E-12 94.4 23.1 36 4-39 184-219 (881)
134 TIGR02732 zeta_caro_desat caro 99.0 1.2E-07 2.5E-12 91.4 22.0 60 6-65 1-76 (474)
135 PRK05335 tRNA (uracil-5-)-meth 99.0 2E-09 4.2E-14 99.3 8.9 112 5-133 3-126 (436)
136 PRK06370 mercuric reductase; V 99.0 3.2E-09 7E-14 102.2 10.6 37 1-37 2-38 (463)
137 TIGR01813 flavo_cyto_c flavocy 99.0 8.6E-09 1.9E-13 98.7 13.4 34 6-39 1-35 (439)
138 PRK06115 dihydrolipoamide dehy 99.0 4.1E-09 8.8E-14 101.4 10.8 35 3-37 2-36 (466)
139 PRK09231 fumarate reductase fl 98.9 1.9E-08 4.1E-13 99.0 15.1 57 108-164 133-198 (582)
140 TIGR01812 sdhA_frdA_Gneg succi 98.9 1.4E-08 3.1E-13 100.2 14.1 34 6-39 1-34 (566)
141 PRK06175 L-aspartate oxidase; 98.9 2.4E-08 5.3E-13 94.9 15.2 38 1-39 1-38 (433)
142 PRK09897 hypothetical protein; 98.9 4.6E-09 1E-13 101.0 10.3 145 5-161 2-165 (534)
143 PRK05945 sdhA succinate dehydr 98.9 2.1E-08 4.5E-13 98.9 14.8 36 3-38 2-39 (575)
144 PRK06069 sdhA succinate dehydr 98.9 1.7E-08 3.8E-13 99.5 14.0 37 3-39 4-43 (577)
145 TIGR01176 fum_red_Fp fumarate 98.9 2.2E-08 4.8E-13 98.3 14.5 57 108-164 132-197 (580)
146 PRK07804 L-aspartate oxidase; 98.9 2E-08 4.3E-13 98.2 13.9 37 3-39 15-51 (541)
147 PF06039 Mqo: Malate:quinone o 98.9 1.9E-08 4.2E-13 92.1 12.7 69 105-173 178-256 (488)
148 PRK08401 L-aspartate oxidase; 98.9 2E-08 4.3E-13 96.6 13.4 34 5-38 2-35 (466)
149 TIGR01424 gluta_reduc_2 glutat 98.9 8E-09 1.7E-13 98.9 10.0 33 4-36 2-34 (446)
150 PF00890 FAD_binding_2: FAD bi 98.9 1.5E-08 3.2E-13 96.6 11.7 58 106-163 139-204 (417)
151 PRK05249 soluble pyridine nucl 98.9 1E-08 2.2E-13 98.9 10.6 36 3-38 4-39 (461)
152 PRK12834 putative FAD-binding 98.9 5.7E-08 1.2E-12 95.4 15.9 37 1-37 1-37 (549)
153 PRK08010 pyridine nucleotide-d 98.9 2.3E-08 4.9E-13 95.8 12.7 35 3-37 2-36 (441)
154 PRK06854 adenylylsulfate reduc 98.9 2.8E-08 6E-13 98.3 13.6 36 4-39 11-48 (608)
155 PRK06116 glutathione reductase 98.9 1.3E-08 2.9E-13 97.7 10.9 36 1-36 1-36 (450)
156 TIGR00551 nadB L-aspartate oxi 98.9 3.5E-08 7.5E-13 95.5 13.6 58 108-165 128-192 (488)
157 PRK10262 thioredoxin reductase 98.9 4.1E-08 9E-13 90.0 13.5 112 2-162 4-117 (321)
158 PRK07573 sdhA succinate dehydr 98.9 6.4E-08 1.4E-12 96.2 15.5 36 4-39 35-70 (640)
159 KOG2853 Possible oxidoreductas 98.9 8.8E-07 1.9E-11 77.4 20.2 36 4-39 86-125 (509)
160 PRK14694 putative mercuric red 98.8 1.3E-08 2.8E-13 98.2 9.8 34 4-37 6-39 (468)
161 PRK07121 hypothetical protein; 98.8 2E-08 4.3E-13 97.5 10.6 36 4-39 20-55 (492)
162 PRK06327 dihydrolipoamide dehy 98.8 1.6E-08 3.5E-13 97.6 9.7 35 1-35 1-35 (475)
163 PF07992 Pyr_redox_2: Pyridine 98.8 9.1E-09 2E-13 87.5 7.1 33 6-38 1-33 (201)
164 PRK07803 sdhA succinate dehydr 98.8 7.4E-08 1.6E-12 95.7 14.0 36 4-39 8-43 (626)
165 PRK07818 dihydrolipoamide dehy 98.8 1.1E-08 2.4E-13 98.6 8.0 36 1-36 1-36 (466)
166 TIGR01421 gluta_reduc_1 glutat 98.8 1.8E-08 3.9E-13 96.4 9.3 35 3-37 1-35 (450)
167 TIGR01350 lipoamide_DH dihydro 98.8 1.7E-07 3.7E-12 90.5 16.1 46 120-165 225-272 (461)
168 PF00070 Pyr_redox: Pyridine n 98.8 1.9E-07 4.1E-12 66.3 11.6 80 6-146 1-80 (80)
169 COG1249 Lpd Pyruvate/2-oxoglut 98.8 2.5E-08 5.5E-13 93.9 9.1 37 1-37 1-37 (454)
170 PTZ00363 rab-GDP dissociation 98.8 1.2E-07 2.6E-12 89.5 13.6 40 1-40 1-40 (443)
171 PRK07251 pyridine nucleotide-d 98.8 2.9E-08 6.3E-13 95.0 9.7 36 3-38 2-37 (438)
172 PRK08275 putative oxidoreducta 98.8 1.2E-07 2.6E-12 93.2 14.0 36 4-39 9-46 (554)
173 PRK06416 dihydrolipoamide dehy 98.8 4.8E-08 1E-12 94.2 10.4 35 3-37 3-37 (462)
174 KOG0685 Flavin-containing amin 98.8 1.3E-06 2.8E-11 80.1 18.7 35 4-38 21-56 (498)
175 PRK06452 sdhA succinate dehydr 98.7 1.8E-07 4E-12 91.9 14.3 36 3-38 4-39 (566)
176 PRK07843 3-ketosteroid-delta-1 98.7 1.8E-07 4E-12 91.8 14.2 37 3-39 6-42 (557)
177 PF13450 NAD_binding_8: NAD(P) 98.7 2.1E-08 4.5E-13 68.3 5.3 32 9-40 1-32 (68)
178 PRK08071 L-aspartate oxidase; 98.7 1.6E-07 3.5E-12 91.1 13.2 36 3-39 2-37 (510)
179 PRK06134 putative FAD-binding 98.7 8.9E-08 1.9E-12 94.5 11.5 37 3-39 11-47 (581)
180 KOG0042 Glycerol-3-phosphate d 98.7 4E-08 8.7E-13 90.7 8.3 56 3-58 66-122 (680)
181 PLN02507 glutathione reductase 98.7 8.4E-08 1.8E-12 92.9 11.1 32 4-35 25-56 (499)
182 PRK08641 sdhA succinate dehydr 98.7 2.4E-07 5.2E-12 91.5 14.2 37 3-39 2-38 (589)
183 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 7.2E-08 1.6E-12 89.6 9.5 34 5-38 1-34 (433)
184 PRK12842 putative succinate de 98.7 6.4E-08 1.4E-12 95.5 9.7 36 4-39 9-44 (574)
185 PRK08626 fumarate reductase fl 98.7 3.3E-07 7.1E-12 91.4 14.6 36 4-39 5-40 (657)
186 PRK09078 sdhA succinate dehydr 98.7 2.7E-07 5.9E-12 91.3 14.0 35 4-38 12-46 (598)
187 PRK13748 putative mercuric red 98.7 1.8E-07 4E-12 92.5 12.8 34 3-36 97-130 (561)
188 PRK08205 sdhA succinate dehydr 98.7 4.1E-07 8.9E-12 89.9 15.1 35 3-38 4-38 (583)
189 PRK06263 sdhA succinate dehydr 98.7 2.4E-07 5.2E-12 90.9 13.2 34 4-38 7-40 (543)
190 PLN02815 L-aspartate oxidase 98.7 2.5E-07 5.4E-12 90.9 13.1 35 4-39 29-63 (594)
191 PTZ00139 Succinate dehydrogena 98.7 4.8E-07 1.1E-11 89.7 14.9 36 4-39 29-64 (617)
192 PRK14727 putative mercuric red 98.7 1.3E-07 2.8E-12 91.4 10.4 36 3-38 15-50 (479)
193 PLN00128 Succinate dehydrogena 98.7 5.4E-07 1.2E-11 89.4 14.9 36 4-39 50-85 (635)
194 PRK08958 sdhA succinate dehydr 98.6 5.2E-07 1.1E-11 89.1 13.9 35 4-38 7-41 (588)
195 PRK07057 sdhA succinate dehydr 98.6 8.7E-07 1.9E-11 87.6 15.4 35 4-38 12-46 (591)
196 PRK09754 phenylpropionate diox 98.6 4.6E-07 9.9E-12 85.5 12.6 109 3-162 2-112 (396)
197 PRK12837 3-ketosteroid-delta-1 98.6 3.6E-07 7.8E-12 89.0 12.1 35 4-39 7-41 (513)
198 TIGR02053 MerA mercuric reduct 98.6 1.2E-07 2.6E-12 91.5 8.4 33 5-37 1-33 (463)
199 PRK06292 dihydrolipoamide dehy 98.6 3.1E-07 6.6E-12 88.6 11.2 34 3-36 2-35 (460)
200 PRK09077 L-aspartate oxidase; 98.6 7E-07 1.5E-11 87.4 13.7 35 4-39 8-42 (536)
201 PTZ00058 glutathione reductase 98.6 9.5E-08 2.1E-12 93.1 7.6 34 3-36 47-80 (561)
202 PRK07512 L-aspartate oxidase; 98.6 4.5E-07 9.8E-12 88.2 12.2 33 4-38 9-41 (513)
203 PRK12844 3-ketosteroid-delta-1 98.6 3.4E-07 7.3E-12 89.9 11.3 37 3-39 5-41 (557)
204 PRK13512 coenzyme A disulfide 98.6 6.3E-07 1.4E-11 85.7 12.8 110 6-162 3-117 (438)
205 PRK04965 NADH:flavorubredoxin 98.6 7.7E-07 1.7E-11 83.5 13.0 107 5-171 142-250 (377)
206 TIGR02485 CobZ_N-term precorri 98.6 4E-07 8.7E-12 87.0 11.1 59 108-166 123-187 (432)
207 PRK12839 hypothetical protein; 98.6 3.9E-07 8.4E-12 89.5 10.7 37 3-39 7-43 (572)
208 PF13434 K_oxygenase: L-lysine 98.6 1.4E-07 2.9E-12 86.4 7.0 148 4-167 2-164 (341)
209 PTZ00052 thioredoxin reductase 98.6 3.8E-07 8.2E-12 88.5 10.4 36 1-36 2-37 (499)
210 TIGR01811 sdhA_Bsu succinate d 98.6 1.5E-06 3.3E-11 86.0 14.5 32 7-38 1-32 (603)
211 PF01593 Amino_oxidase: Flavin 98.5 9.2E-07 2E-11 84.7 12.8 46 120-165 223-268 (450)
212 PTZ00306 NADH-dependent fumara 98.5 1.5E-06 3.2E-11 92.4 15.3 37 3-39 408-444 (1167)
213 PRK09564 coenzyme A disulfide 98.5 8.8E-07 1.9E-11 85.1 12.5 109 6-162 2-115 (444)
214 TIGR01423 trypano_reduc trypan 98.5 7.2E-07 1.6E-11 86.0 11.3 34 3-36 2-36 (486)
215 PRK07845 flavoprotein disulfid 98.5 6.9E-07 1.5E-11 86.1 10.9 33 5-37 2-34 (466)
216 PRK07395 L-aspartate oxidase; 98.5 1E-06 2.3E-11 86.2 12.1 36 3-39 8-43 (553)
217 PRK12845 3-ketosteroid-delta-1 98.5 5.2E-07 1.1E-11 88.4 9.9 36 3-39 15-50 (564)
218 COG4529 Uncharacterized protei 98.5 4E-07 8.6E-12 84.0 8.4 146 5-161 2-163 (474)
219 COG0445 GidA Flavin-dependent 98.5 1.5E-07 3.3E-12 87.5 5.7 145 1-161 1-157 (621)
220 COG1233 Phytoene dehydrogenase 98.5 1.1E-07 2.5E-12 91.7 5.2 53 108-160 224-279 (487)
221 COG0029 NadB Aspartate oxidase 98.5 7.1E-07 1.5E-11 82.3 9.8 152 6-167 9-201 (518)
222 PRK12835 3-ketosteroid-delta-1 98.5 3E-07 6.6E-12 90.6 7.8 37 3-39 10-46 (584)
223 PRK12779 putative bifunctional 98.5 3.6E-07 7.7E-12 94.3 8.5 35 4-38 306-340 (944)
224 PLN02546 glutathione reductase 98.5 6E-07 1.3E-11 87.6 9.6 32 4-35 79-110 (558)
225 TIGR03197 MnmC_Cterm tRNA U-34 98.5 9.3E-06 2E-10 76.4 17.3 61 103-163 130-191 (381)
226 PRK06912 acoL dihydrolipoamide 98.5 8.7E-07 1.9E-11 85.3 10.2 33 6-38 2-34 (458)
227 TIGR02061 aprA adenosine phosp 98.5 2.4E-06 5.2E-11 84.2 13.1 34 6-39 1-38 (614)
228 PRK07208 hypothetical protein; 98.5 2.2E-07 4.8E-12 90.2 5.9 39 1-39 1-39 (479)
229 PRK12843 putative FAD-binding 98.5 1.1E-06 2.4E-11 86.7 10.9 36 4-39 16-51 (578)
230 COG2509 Uncharacterized FAD-de 98.5 3E-06 6.6E-11 77.3 12.6 44 120-163 187-231 (486)
231 PTZ00153 lipoamide dehydrogena 98.4 1.3E-06 2.8E-11 86.5 11.0 33 4-36 116-148 (659)
232 KOG2665 Predicted FAD-dependen 98.4 1.2E-06 2.5E-11 75.9 9.0 159 3-164 47-259 (453)
233 PRK09853 putative selenate red 98.4 1.3E-06 2.9E-11 89.2 10.5 35 4-38 539-573 (1019)
234 PRK13800 putative oxidoreducta 98.4 2.9E-06 6.2E-11 88.1 13.2 35 4-38 13-47 (897)
235 TIGR03452 mycothione_red mycot 98.4 7.1E-07 1.5E-11 85.6 8.1 33 3-37 1-33 (452)
236 COG2907 Predicted NAD/FAD-bind 98.4 2.1E-06 4.4E-11 75.5 9.9 45 121-165 232-276 (447)
237 PRK05249 soluble pyridine nucl 98.4 4E-06 8.6E-11 81.0 12.9 99 5-164 176-274 (461)
238 PRK04965 NADH:flavorubredoxin 98.4 3.4E-06 7.3E-11 79.2 11.8 107 5-162 3-111 (377)
239 PRK07846 mycothione reductase; 98.4 8E-07 1.7E-11 85.2 7.6 32 4-37 1-32 (451)
240 TIGR01372 soxA sarcosine oxida 98.4 3.1E-06 6.7E-11 88.6 12.4 35 4-38 163-197 (985)
241 TIGR01438 TGR thioredoxin and 98.4 3E-06 6.6E-11 81.8 11.5 33 4-36 2-34 (484)
242 PRK06416 dihydrolipoamide dehy 98.4 5.8E-06 1.3E-10 79.8 13.3 99 5-164 173-274 (462)
243 COG1053 SdhA Succinate dehydro 98.3 2.8E-06 6E-11 82.5 10.2 39 2-40 4-42 (562)
244 PRK09754 phenylpropionate diox 98.3 7.7E-06 1.7E-10 77.3 12.8 98 5-163 145-242 (396)
245 KOG0029 Amine oxidase [Seconda 98.3 7.6E-07 1.7E-11 85.1 5.3 37 3-39 14-50 (501)
246 KOG2852 Possible oxidoreductas 98.3 3E-06 6.6E-11 72.4 8.0 160 3-163 9-209 (380)
247 KOG1335 Dihydrolipoamide dehyd 98.3 3.2E-06 6.8E-11 75.2 8.3 36 4-39 39-74 (506)
248 PRK14989 nitrite reductase sub 98.3 5.2E-06 1.1E-10 85.0 11.0 109 1-162 1-113 (847)
249 PTZ00318 NADH dehydrogenase-li 98.3 7.1E-06 1.5E-10 78.2 11.3 36 3-38 9-44 (424)
250 PRK07846 mycothione reductase; 98.3 1.3E-05 2.8E-10 76.9 13.1 98 5-164 167-264 (451)
251 PRK06116 glutathione reductase 98.3 1.2E-05 2.6E-10 77.4 12.9 99 5-164 168-267 (450)
252 PRK12778 putative bifunctional 98.3 1.8E-06 3.9E-11 88.2 7.3 35 4-38 431-465 (752)
253 TIGR03169 Nterm_to_SelD pyridi 98.3 5.1E-06 1.1E-10 77.6 9.9 105 6-163 1-108 (364)
254 COG3573 Predicted oxidoreducta 98.3 2.1E-05 4.5E-10 68.9 12.4 35 4-38 5-39 (552)
255 PRK07845 flavoprotein disulfid 98.2 1.4E-05 3.1E-10 77.0 12.8 99 5-164 178-276 (466)
256 COG3349 Uncharacterized conser 98.2 1.2E-06 2.6E-11 81.8 5.0 37 5-41 1-37 (485)
257 COG3634 AhpF Alkyl hydroperoxi 98.2 6.2E-06 1.3E-10 72.5 8.0 108 4-161 211-324 (520)
258 COG1249 Lpd Pyruvate/2-oxoglut 98.2 3.2E-05 6.9E-10 73.2 13.4 99 4-163 173-273 (454)
259 TIGR02374 nitri_red_nirB nitri 98.2 9E-06 2E-10 83.1 10.5 105 7-162 1-108 (785)
260 COG3075 GlpB Anaerobic glycero 98.2 2.4E-06 5.1E-11 74.5 5.2 36 3-38 1-36 (421)
261 PRK07251 pyridine nucleotide-d 98.2 2.2E-05 4.8E-10 75.3 12.4 97 5-163 158-254 (438)
262 PLN02507 glutathione reductase 98.2 3E-05 6.5E-10 75.3 13.2 99 5-164 204-302 (499)
263 KOG3923 D-aspartate oxidase [A 98.2 9.4E-05 2E-09 63.9 14.3 37 4-40 3-46 (342)
264 KOG2311 NAD/FAD-utilizing prot 98.2 4.7E-06 1E-10 76.2 6.8 144 3-161 27-185 (679)
265 TIGR01424 gluta_reduc_2 glutat 98.1 2.7E-05 5.9E-10 74.7 12.4 98 5-163 167-264 (446)
266 TIGR00031 UDP-GALP_mutase UDP- 98.1 2.8E-06 6.1E-11 78.4 5.2 34 5-38 2-35 (377)
267 TIGR02733 desat_CrtD C-3',4' d 98.1 2.8E-06 6E-11 82.8 5.3 35 5-39 2-36 (492)
268 TIGR01421 gluta_reduc_1 glutat 98.1 4.4E-05 9.5E-10 73.3 13.1 99 5-164 167-267 (450)
269 PRK07818 dihydrolipoamide dehy 98.1 5E-05 1.1E-09 73.4 13.4 99 5-164 173-275 (466)
270 PRK06912 acoL dihydrolipoamide 98.1 5.9E-05 1.3E-09 72.7 13.4 99 5-164 171-270 (458)
271 COG3486 IucD Lysine/ornithine 98.1 9.1E-06 2E-10 73.3 7.1 149 1-164 2-159 (436)
272 COG1252 Ndh NADH dehydrogenase 98.1 3.6E-05 7.8E-10 71.1 11.2 108 4-163 3-112 (405)
273 TIGR03315 Se_ygfK putative sel 98.1 3.7E-06 8E-11 86.4 5.2 36 4-39 537-572 (1012)
274 PRK06370 mercuric reductase; V 98.1 4.8E-05 1E-09 73.5 12.6 98 5-163 172-272 (463)
275 TIGR03385 CoA_CoA_reduc CoA-di 98.1 3.5E-05 7.7E-10 73.6 11.4 97 5-163 138-234 (427)
276 PRK05976 dihydrolipoamide dehy 98.1 5.7E-05 1.2E-09 73.1 12.8 98 5-163 181-282 (472)
277 KOG2404 Fumarate reductase, fl 98.1 1.7E-05 3.8E-10 69.0 8.1 34 6-39 11-44 (477)
278 PRK06327 dihydrolipoamide dehy 98.0 6.9E-05 1.5E-09 72.6 13.0 99 5-164 184-286 (475)
279 TIGR02053 MerA mercuric reduct 98.0 5.8E-05 1.3E-09 72.9 12.5 98 5-163 167-267 (463)
280 PRK06115 dihydrolipoamide dehy 98.0 6.9E-05 1.5E-09 72.3 12.5 98 5-163 175-277 (466)
281 TIGR03452 mycothione_red mycot 98.0 8.5E-05 1.8E-09 71.4 13.0 97 5-163 170-266 (452)
282 PLN02852 ferredoxin-NADP+ redu 98.0 6.4E-06 1.4E-10 78.7 5.2 37 4-40 26-64 (491)
283 TIGR02352 thiamin_ThiO glycine 98.0 0.00033 7.2E-09 64.6 16.5 61 103-164 132-195 (337)
284 PRK12831 putative oxidoreducta 98.0 6.6E-06 1.4E-10 79.1 5.2 35 4-38 140-174 (464)
285 PF00732 GMC_oxred_N: GMC oxid 98.0 5.6E-06 1.2E-10 75.0 4.4 34 5-38 1-35 (296)
286 KOG0404 Thioredoxin reductase 98.0 5.2E-05 1.1E-09 62.6 9.2 115 3-161 7-123 (322)
287 TIGR02374 nitri_red_nirB nitri 98.0 4.3E-05 9.2E-10 78.3 10.9 98 5-162 141-238 (785)
288 COG1148 HdrA Heterodisulfide r 98.0 8.8E-06 1.9E-10 74.7 4.9 35 5-39 125-159 (622)
289 PRK08010 pyridine nucleotide-d 98.0 0.00014 3.1E-09 69.7 13.3 98 5-164 159-256 (441)
290 PRK02106 choline dehydrogenase 98.0 8.6E-06 1.9E-10 80.4 5.0 37 1-37 2-39 (560)
291 PRK05329 anaerobic glycerol-3- 97.9 1E-05 2.2E-10 76.0 5.1 34 4-37 2-35 (422)
292 COG0562 Glf UDP-galactopyranos 97.9 1.4E-05 3E-10 69.7 5.3 35 5-39 2-36 (374)
293 PRK06567 putative bifunctional 97.9 9.4E-06 2E-10 82.2 4.7 34 4-37 383-416 (1028)
294 PRK06467 dihydrolipoamide dehy 97.9 0.00015 3.2E-09 70.1 12.8 98 5-164 175-276 (471)
295 TIGR01316 gltA glutamate synth 97.9 1.3E-05 2.9E-10 76.8 5.4 36 4-39 133-168 (449)
296 PRK14989 nitrite reductase sub 97.9 0.00014 3.1E-09 74.7 12.8 99 5-163 146-246 (847)
297 PRK13512 coenzyme A disulfide 97.9 0.00013 2.8E-09 69.9 11.6 93 5-162 149-241 (438)
298 PTZ00052 thioredoxin reductase 97.9 0.00017 3.7E-09 70.1 12.6 98 5-164 183-280 (499)
299 PTZ00188 adrenodoxin reductase 97.9 1.6E-05 3.5E-10 75.0 5.3 37 4-40 39-76 (506)
300 TIGR01423 trypano_reduc trypan 97.9 0.00018 3.9E-09 69.5 12.6 99 5-164 188-290 (486)
301 PF13434 K_oxygenase: L-lysine 97.9 6.8E-05 1.5E-09 68.8 9.2 131 4-160 190-339 (341)
302 PRK09564 coenzyme A disulfide 97.9 0.00021 4.5E-09 68.8 13.0 97 5-162 150-246 (444)
303 PRK14694 putative mercuric red 97.9 0.00022 4.7E-09 69.0 13.0 97 5-164 179-275 (468)
304 PRK12769 putative oxidoreducta 97.9 1.7E-05 3.7E-10 79.7 5.4 36 4-39 327-362 (654)
305 PRK12775 putative trifunctiona 97.9 1.6E-05 3.5E-10 83.0 5.3 36 4-39 430-465 (1006)
306 PRK14727 putative mercuric red 97.9 0.00022 4.7E-09 69.2 12.6 97 5-164 189-285 (479)
307 TIGR02462 pyranose_ox pyranose 97.8 1.9E-05 4.1E-10 76.3 5.0 36 5-40 1-36 (544)
308 KOG1276 Protoporphyrinogen oxi 97.8 3.9E-05 8.4E-10 69.6 6.4 63 4-66 11-94 (491)
309 PRK12810 gltD glutamate syntha 97.8 2.3E-05 5E-10 75.7 5.4 36 4-39 143-178 (471)
310 PRK13977 myosin-cross-reactive 97.8 2.9E-05 6.4E-10 74.7 5.9 36 4-39 22-61 (576)
311 TIGR03378 glycerol3P_GlpB glyc 97.8 2.7E-05 5.9E-10 72.4 5.4 33 5-37 1-33 (419)
312 PTZ00058 glutathione reductase 97.8 0.0004 8.6E-09 68.1 13.4 99 4-163 237-337 (561)
313 PRK11749 dihydropyrimidine deh 97.8 2.7E-05 5.9E-10 75.0 5.1 36 4-39 140-175 (457)
314 TIGR01438 TGR thioredoxin and 97.8 0.00033 7.2E-09 67.8 12.3 97 5-163 181-280 (484)
315 PRK06292 dihydrolipoamide dehy 97.8 0.0004 8.7E-09 67.1 13.0 98 5-164 170-270 (460)
316 COG0446 HcaD Uncharacterized N 97.7 0.0003 6.5E-09 66.9 11.5 98 5-162 137-237 (415)
317 PRK12814 putative NADPH-depend 97.7 3.8E-05 8.2E-10 77.0 5.4 36 4-39 193-228 (652)
318 PRK13748 putative mercuric red 97.7 0.00046 1E-08 68.5 13.0 97 5-164 271-367 (561)
319 TIGR03377 glycerol3P_GlpA glyc 97.7 0.0054 1.2E-07 60.2 20.1 68 104-171 124-200 (516)
320 TIGR01318 gltD_gamma_fam gluta 97.7 4.2E-05 9.2E-10 73.6 5.2 36 4-39 141-176 (467)
321 COG2303 BetA Choline dehydroge 97.7 4E-05 8.7E-10 74.9 4.6 37 1-37 4-40 (542)
322 PTZ00318 NADH dehydrogenase-li 97.7 0.00061 1.3E-08 65.0 12.2 47 109-161 233-279 (424)
323 TIGR03140 AhpF alkyl hydropero 97.6 0.00053 1.1E-08 67.1 11.6 91 5-161 353-449 (515)
324 PRK12809 putative oxidoreducta 97.6 6.4E-05 1.4E-09 75.4 5.3 36 4-39 310-345 (639)
325 TIGR01292 TRX_reduct thioredox 97.6 0.00071 1.5E-08 61.3 11.7 91 5-161 142-237 (300)
326 PRK12770 putative glutamate sy 97.6 7.9E-05 1.7E-09 69.2 5.5 36 4-39 18-53 (352)
327 PLN02546 glutathione reductase 97.6 0.00081 1.8E-08 66.0 11.9 99 5-164 253-352 (558)
328 PTZ00153 lipoamide dehydrogena 97.6 0.00069 1.5E-08 67.5 11.5 100 5-164 313-429 (659)
329 COG0493 GltD NADPH-dependent g 97.5 7.7E-05 1.7E-09 70.7 4.2 35 5-39 124-158 (457)
330 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00011 2.3E-09 71.2 5.1 35 5-39 144-178 (485)
331 COG1206 Gid NAD(FAD)-utilizing 97.5 0.00015 3.3E-09 63.5 5.4 35 4-38 3-37 (439)
332 PRK12771 putative glutamate sy 97.5 0.0001 2.2E-09 72.9 4.9 35 5-39 138-172 (564)
333 KOG2960 Protein involved in th 97.4 0.00015 3.2E-09 59.5 3.9 36 5-40 77-114 (328)
334 COG1252 Ndh NADH dehydrogenase 97.4 0.0011 2.3E-08 61.5 9.7 52 110-167 215-268 (405)
335 TIGR01810 betA choline dehydro 97.4 0.00013 2.9E-09 71.7 4.0 33 6-38 1-34 (532)
336 PLN02785 Protein HOTHEAD 97.4 0.00018 3.9E-09 70.9 4.9 34 4-38 55-88 (587)
337 PRK13984 putative oxidoreducta 97.4 0.00024 5.1E-09 71.1 5.3 36 4-39 283-318 (604)
338 KOG4716 Thioredoxin reductase 97.3 0.0013 2.7E-08 58.1 8.6 33 3-35 18-50 (503)
339 KOG1800 Ferredoxin/adrenodoxin 97.3 0.00035 7.7E-09 62.5 4.8 37 4-40 20-58 (468)
340 PRK12770 putative glutamate sy 97.3 0.0024 5.2E-08 59.4 10.6 33 5-37 173-206 (352)
341 PRK10262 thioredoxin reductase 97.3 0.0024 5.1E-08 58.6 10.5 33 5-37 147-179 (321)
342 TIGR03467 HpnE squalene-associ 97.3 0.0094 2E-07 56.8 14.9 48 120-168 211-259 (419)
343 KOG3851 Sulfide:quinone oxidor 97.2 0.00027 5.8E-09 61.8 3.2 36 3-38 38-75 (446)
344 PRK15317 alkyl hydroperoxide r 97.2 0.0035 7.7E-08 61.4 10.9 91 5-161 352-448 (517)
345 TIGR03862 flavo_PP4765 unchara 97.1 0.0067 1.5E-07 56.2 11.4 67 106-174 84-164 (376)
346 TIGR03169 Nterm_to_SelD pyridi 97.1 0.0075 1.6E-07 56.3 11.8 48 109-162 196-243 (364)
347 TIGR01316 gltA glutamate synth 97.0 0.0075 1.6E-07 58.0 11.8 33 5-37 273-305 (449)
348 PRK11749 dihydropyrimidine deh 97.0 0.0049 1.1E-07 59.5 10.5 33 5-37 274-307 (457)
349 KOG0399 Glutamate synthase [Am 97.0 0.00067 1.4E-08 68.7 4.3 35 5-39 1786-1820(2142)
350 KOG0405 Pyridine nucleotide-di 97.0 0.0055 1.2E-07 54.5 9.2 34 3-36 19-52 (478)
351 KOG1336 Monodehydroascorbate/f 97.0 0.0054 1.2E-07 57.0 9.5 39 120-160 141-179 (478)
352 PF00996 GDI: GDP dissociation 97.0 0.0011 2.3E-08 62.4 5.1 38 1-38 1-38 (438)
353 KOG1336 Monodehydroascorbate/f 96.9 0.0069 1.5E-07 56.3 9.2 98 5-162 214-313 (478)
354 PLN02172 flavin-containing mon 96.9 0.0024 5.2E-08 61.3 6.6 33 5-37 205-237 (461)
355 PF01210 NAD_Gly3P_dh_N: NAD-d 96.8 0.0015 3.2E-08 52.9 4.1 32 6-37 1-32 (157)
356 TIGR01372 soxA sarcosine oxida 96.8 0.0086 1.9E-07 63.3 10.7 91 5-164 318-413 (985)
357 KOG4254 Phytoene desaturase [C 96.8 0.0011 2.4E-08 60.8 3.5 49 120-168 278-327 (561)
358 PRK12810 gltD glutamate syntha 96.7 0.017 3.6E-07 56.0 11.5 38 286-328 430-467 (471)
359 PF02737 3HCDH_N: 3-hydroxyacy 96.7 0.002 4.3E-08 53.4 4.1 33 6-38 1-33 (180)
360 PRK12831 putative oxidoreducta 96.7 0.022 4.8E-07 54.9 11.7 33 5-37 282-314 (464)
361 KOG1238 Glucose dehydrogenase/ 96.6 0.0023 4.9E-08 61.8 4.2 37 3-39 56-93 (623)
362 COG0569 TrkA K+ transport syst 96.6 0.0028 6.2E-08 54.5 4.5 57 6-62 2-65 (225)
363 PRK07530 3-hydroxybutyryl-CoA 96.6 0.0032 6.9E-08 56.8 4.8 38 1-38 1-38 (292)
364 TIGR03143 AhpF_homolog putativ 96.5 0.026 5.5E-07 55.9 11.4 33 5-37 144-176 (555)
365 TIGR02733 desat_CrtD C-3',4' d 96.5 0.12 2.6E-06 50.4 16.0 55 108-162 232-294 (492)
366 KOG1335 Dihydrolipoamide dehyd 96.5 0.021 4.5E-07 51.7 9.1 97 5-162 212-314 (506)
367 PRK07819 3-hydroxybutyryl-CoA 96.4 0.0048 1E-07 55.3 4.7 38 1-38 1-39 (286)
368 PRK02705 murD UDP-N-acetylmura 96.3 0.0047 1E-07 59.7 4.6 34 6-39 2-35 (459)
369 PRK01438 murD UDP-N-acetylmura 96.3 0.0055 1.2E-07 59.6 5.1 33 5-37 17-49 (480)
370 PF03721 UDPG_MGDP_dh_N: UDP-g 96.2 0.0055 1.2E-07 50.9 4.0 33 6-38 2-34 (185)
371 PF02558 ApbA: Ketopantoate re 96.2 0.0077 1.7E-07 48.4 4.8 31 7-37 1-31 (151)
372 PF00743 FMO-like: Flavin-bind 96.2 0.012 2.7E-07 57.4 7.0 35 4-38 183-217 (531)
373 PRK06129 3-hydroxyacyl-CoA deh 96.1 0.007 1.5E-07 55.0 4.4 33 6-38 4-36 (308)
374 TIGR01350 lipoamide_DH dihydro 96.1 0.011 2.3E-07 57.3 5.8 35 5-39 171-205 (461)
375 PRK12778 putative bifunctional 96.0 0.063 1.4E-06 55.3 11.4 34 5-38 571-605 (752)
376 PRK14106 murD UDP-N-acetylmura 96.0 0.01 2.2E-07 57.3 5.2 34 4-37 5-38 (450)
377 PRK06249 2-dehydropantoate 2-r 96.0 0.011 2.4E-07 53.9 5.0 34 4-37 5-38 (313)
378 PRK12814 putative NADPH-depend 96.0 0.094 2E-06 53.0 12.0 33 5-37 324-357 (652)
379 PRK05708 2-dehydropantoate 2-r 95.9 0.011 2.4E-07 53.6 4.9 33 5-37 3-35 (305)
380 PRK07066 3-hydroxybutyryl-CoA 95.9 0.012 2.6E-07 53.4 5.0 34 5-38 8-41 (321)
381 PRK08293 3-hydroxybutyryl-CoA 95.9 0.012 2.6E-07 52.9 4.8 34 5-38 4-37 (287)
382 PRK06719 precorrin-2 dehydroge 95.8 0.016 3.4E-07 46.8 4.9 32 4-35 13-44 (157)
383 PRK06130 3-hydroxybutyryl-CoA 95.8 0.014 3E-07 53.3 5.0 38 1-38 1-38 (311)
384 PLN02545 3-hydroxybutyryl-CoA 95.8 0.013 2.8E-07 52.9 4.8 38 1-38 1-38 (295)
385 COG3486 IucD Lysine/ornithine 95.8 0.075 1.6E-06 48.7 9.4 44 119-162 291-340 (436)
386 PRK08229 2-dehydropantoate 2-r 95.7 0.014 3.1E-07 53.9 4.9 34 1-36 1-34 (341)
387 PRK14618 NAD(P)H-dependent gly 95.7 0.016 3.5E-07 53.2 5.2 38 1-38 1-38 (328)
388 PRK09260 3-hydroxybutyryl-CoA 95.6 0.014 3.1E-07 52.4 4.3 33 6-38 3-35 (288)
389 TIGR01470 cysG_Nterm siroheme 95.6 0.02 4.4E-07 48.4 4.9 33 4-36 9-41 (205)
390 PRK06035 3-hydroxyacyl-CoA deh 95.6 0.017 3.7E-07 52.1 4.7 34 5-38 4-37 (291)
391 PF00899 ThiF: ThiF family; I 95.6 0.018 4E-07 45.2 4.2 35 4-38 2-37 (135)
392 PRK12921 2-dehydropantoate 2-r 95.5 0.018 3.8E-07 52.4 4.6 30 6-35 2-31 (305)
393 PRK05808 3-hydroxybutyryl-CoA 95.5 0.019 4.1E-07 51.5 4.7 34 5-38 4-37 (282)
394 PF13241 NAD_binding_7: Putati 95.5 0.012 2.6E-07 43.8 2.8 35 3-37 6-40 (103)
395 KOG1346 Programmed cell death 95.5 0.037 8E-07 50.6 6.3 43 119-161 406-448 (659)
396 PRK06522 2-dehydropantoate 2-r 95.5 0.018 4E-07 52.2 4.6 32 6-37 2-33 (304)
397 COG1251 NirB NAD(P)H-nitrite r 95.4 0.045 9.7E-07 53.9 7.1 106 5-170 146-253 (793)
398 PRK04148 hypothetical protein; 95.4 0.017 3.6E-07 44.7 3.4 33 5-38 18-50 (134)
399 TIGR02354 thiF_fam2 thiamine b 95.4 0.025 5.4E-07 47.7 4.7 34 4-37 21-55 (200)
400 PRK07531 bifunctional 3-hydrox 95.4 0.022 4.7E-07 55.4 4.9 38 1-38 1-38 (495)
401 PRK06718 precorrin-2 dehydroge 95.4 0.028 6E-07 47.5 4.9 33 4-36 10-42 (202)
402 PTZ00082 L-lactate dehydrogena 95.4 0.03 6.4E-07 51.1 5.4 37 2-38 4-41 (321)
403 PF13478 XdhC_C: XdhC Rossmann 95.3 0.022 4.8E-07 44.6 3.9 32 7-38 1-32 (136)
404 PF02254 TrkA_N: TrkA-N domain 95.3 0.027 5.8E-07 42.8 4.3 32 7-38 1-32 (116)
405 PF01262 AlaDh_PNT_C: Alanine 95.3 0.032 7E-07 45.7 4.9 34 4-37 20-53 (168)
406 COG0446 HcaD Uncharacterized N 95.2 0.14 3.1E-06 48.5 10.0 105 7-163 1-107 (415)
407 cd05292 LDH_2 A subgroup of L- 95.2 0.03 6.5E-07 50.8 4.8 33 6-38 2-36 (308)
408 PRK15116 sulfur acceptor prote 95.1 0.035 7.6E-07 48.8 4.9 35 4-38 30-65 (268)
409 TIGR01318 gltD_gamma_fam gluta 95.1 0.31 6.7E-06 47.2 11.9 34 5-38 283-317 (467)
410 PRK11064 wecC UDP-N-acetyl-D-m 95.1 0.028 6E-07 53.3 4.6 34 5-38 4-37 (415)
411 PF00056 Ldh_1_N: lactate/mala 95.1 0.044 9.5E-07 43.3 5.0 33 6-38 2-37 (141)
412 COG5044 MRS6 RAB proteins gera 95.1 0.042 9.1E-07 49.5 5.2 36 4-39 6-41 (434)
413 COG1251 NirB NAD(P)H-nitrite r 95.0 0.16 3.5E-06 50.2 9.5 109 3-162 2-113 (793)
414 PRK14619 NAD(P)H-dependent gly 95.0 0.038 8.3E-07 50.2 5.1 36 3-38 3-38 (308)
415 PF01488 Shikimate_DH: Shikima 94.9 0.059 1.3E-06 42.3 5.3 34 4-37 12-46 (135)
416 KOG1439 RAB proteins geranylge 94.9 0.014 3.1E-07 52.9 2.0 39 1-39 1-39 (440)
417 PRK14620 NAD(P)H-dependent gly 94.9 0.036 7.8E-07 50.9 4.7 32 6-37 2-33 (326)
418 KOG2304 3-hydroxyacyl-CoA dehy 94.9 0.031 6.7E-07 46.7 3.6 36 3-38 10-45 (298)
419 TIGR01763 MalateDH_bact malate 94.9 0.046 9.9E-07 49.5 5.1 34 5-38 2-36 (305)
420 TIGR00518 alaDH alanine dehydr 94.8 0.043 9.3E-07 51.1 4.9 34 4-37 167-200 (370)
421 PRK00094 gpsA NAD(P)H-dependen 94.8 0.038 8.2E-07 50.7 4.6 33 6-38 3-35 (325)
422 PRK09424 pntA NAD(P) transhydr 94.7 0.037 8.1E-07 53.3 4.3 35 4-38 165-199 (509)
423 PF03446 NAD_binding_2: NAD bi 94.7 0.05 1.1E-06 44.3 4.5 34 5-38 2-35 (163)
424 TIGR03378 glycerol3P_GlpB glyc 94.7 0.15 3.2E-06 48.0 8.1 59 105-163 260-324 (419)
425 PRK00066 ldh L-lactate dehydro 94.7 0.059 1.3E-06 49.0 5.3 35 4-38 6-42 (315)
426 PRK07417 arogenate dehydrogena 94.6 0.039 8.5E-07 49.4 4.0 32 6-37 2-33 (279)
427 cd00401 AdoHcyase S-adenosyl-L 94.6 0.047 1E-06 51.2 4.6 34 5-38 203-236 (413)
428 PRK09853 putative selenate red 94.6 0.4 8.7E-06 50.2 11.5 34 5-38 669-704 (1019)
429 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.066 1.4E-06 43.6 4.8 33 4-36 44-77 (168)
430 TIGR02356 adenyl_thiF thiazole 94.6 0.061 1.3E-06 45.5 4.8 35 4-38 21-56 (202)
431 PRK12475 thiamine/molybdopteri 94.5 0.055 1.2E-06 49.6 4.8 35 4-38 24-59 (338)
432 TIGR03026 NDP-sugDHase nucleot 94.5 0.044 9.5E-07 52.1 4.3 33 6-38 2-34 (411)
433 PF06100 Strep_67kDa_ant: Stre 94.5 0.054 1.2E-06 51.2 4.6 36 4-39 2-41 (500)
434 PRK12769 putative oxidoreducta 94.4 0.57 1.2E-05 47.5 12.2 34 5-38 469-503 (654)
435 TIGR02964 xanthine_xdhC xanthi 94.3 0.077 1.7E-06 46.3 5.0 36 3-38 99-134 (246)
436 cd01487 E1_ThiF_like E1_ThiF_l 94.3 0.079 1.7E-06 43.6 4.8 33 6-38 1-34 (174)
437 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.3 0.062 1.3E-06 52.2 4.7 35 4-38 5-39 (503)
438 TIGR02355 moeB molybdopterin s 94.2 0.078 1.7E-06 46.1 4.8 35 4-38 24-59 (240)
439 TIGR01915 npdG NADPH-dependent 94.2 0.074 1.6E-06 45.7 4.6 32 6-37 2-34 (219)
440 COG1748 LYS9 Saccharopine dehy 94.1 0.073 1.6E-06 49.2 4.7 33 5-37 2-35 (389)
441 PRK05690 molybdopterin biosynt 94.1 0.081 1.8E-06 46.2 4.8 35 4-38 32-67 (245)
442 PRK07688 thiamine/molybdopteri 94.0 0.085 1.8E-06 48.4 4.9 35 4-38 24-59 (339)
443 PRK06223 malate dehydrogenase; 94.0 0.085 1.8E-06 48.0 4.9 34 5-38 3-37 (307)
444 COG1004 Ugd Predicted UDP-gluc 94.0 0.073 1.6E-06 48.7 4.3 34 5-38 1-34 (414)
445 PRK05675 sdhA succinate dehydr 94.0 0.66 1.4E-05 46.2 11.4 57 108-164 126-191 (570)
446 PRK08268 3-hydroxy-acyl-CoA de 94.0 0.076 1.7E-06 51.7 4.7 34 5-38 8-41 (507)
447 cd01483 E1_enzyme_family Super 94.0 0.097 2.1E-06 41.5 4.6 33 6-38 1-34 (143)
448 PRK08644 thiamine biosynthesis 93.9 0.1 2.2E-06 44.4 4.9 35 4-38 28-63 (212)
449 cd00757 ThiF_MoeB_HesA_family 93.9 0.094 2E-06 45.3 4.7 35 4-38 21-56 (228)
450 TIGR00936 ahcY adenosylhomocys 93.8 0.1 2.3E-06 48.8 5.1 35 4-38 195-229 (406)
451 PRK08328 hypothetical protein; 93.7 0.11 2.3E-06 45.0 4.8 35 4-38 27-62 (231)
452 cd05293 LDH_1 A subgroup of L- 93.7 0.11 2.5E-06 47.0 5.1 36 3-38 2-39 (312)
453 PRK07208 hypothetical protein; 93.7 3.3 7.1E-05 40.3 15.6 57 108-164 218-282 (479)
454 cd05291 HicDH_like L-2-hydroxy 93.6 0.1 2.3E-06 47.3 4.7 33 6-38 2-36 (306)
455 PRK05442 malate dehydrogenase; 93.6 0.11 2.4E-06 47.3 4.8 38 1-38 1-46 (326)
456 PRK08306 dipicolinate synthase 93.6 0.11 2.4E-06 46.8 4.7 35 4-38 152-186 (296)
457 cd01492 Aos1_SUMO Ubiquitin ac 93.6 0.12 2.6E-06 43.5 4.7 35 4-38 21-56 (197)
458 cd00755 YgdL_like Family of ac 93.5 0.12 2.7E-06 44.5 4.7 35 4-38 11-46 (231)
459 PRK11730 fadB multifunctional 93.4 0.085 1.8E-06 53.8 4.2 34 5-38 314-347 (715)
460 TIGR03736 PRTRC_ThiF PRTRC sys 93.4 0.13 2.7E-06 44.7 4.6 36 3-38 10-56 (244)
461 KOG1346 Programmed cell death 93.4 0.3 6.5E-06 44.9 7.1 133 4-163 178-312 (659)
462 PRK01710 murD UDP-N-acetylmura 93.4 0.1 2.2E-06 50.4 4.5 34 5-38 15-48 (458)
463 PRK11559 garR tartronate semia 93.4 0.11 2.4E-06 46.9 4.5 34 5-38 3-36 (296)
464 cd01485 E1-1_like Ubiquitin ac 93.4 0.14 3E-06 43.2 4.7 35 4-38 19-54 (198)
465 PF10727 Rossmann-like: Rossma 93.4 0.064 1.4E-06 41.3 2.5 33 4-36 10-42 (127)
466 COG0771 MurD UDP-N-acetylmuram 93.3 0.1 2.3E-06 49.3 4.3 36 4-39 7-42 (448)
467 PRK12549 shikimate 5-dehydroge 93.3 0.13 2.9E-06 46.0 4.8 33 5-37 128-161 (284)
468 PRK15057 UDP-glucose 6-dehydro 93.3 0.11 2.3E-06 48.8 4.3 32 6-38 2-33 (388)
469 TIGR02437 FadB fatty oxidation 93.3 0.095 2.1E-06 53.3 4.2 34 5-38 314-347 (714)
470 cd01075 NAD_bind_Leu_Phe_Val_D 93.2 0.16 3.5E-06 42.8 5.0 32 5-36 29-60 (200)
471 PTZ00117 malate dehydrogenase; 93.2 0.15 3.2E-06 46.5 5.1 36 3-38 4-40 (319)
472 cd05311 NAD_bind_2_malic_enz N 93.2 0.15 3.2E-06 44.0 4.7 34 4-37 25-61 (226)
473 COG1063 Tdh Threonine dehydrog 93.2 0.11 2.4E-06 48.1 4.3 33 6-38 171-204 (350)
474 PRK03369 murD UDP-N-acetylmura 93.2 0.11 2.4E-06 50.6 4.4 32 5-36 13-44 (488)
475 TIGR00561 pntA NAD(P) transhyd 93.2 0.13 2.8E-06 49.6 4.7 35 4-38 164-198 (511)
476 TIGR01505 tartro_sem_red 2-hyd 93.1 0.1 2.3E-06 47.0 3.9 33 6-38 1-33 (291)
477 PRK04308 murD UDP-N-acetylmura 93.1 0.16 3.4E-06 48.9 5.3 34 5-38 6-39 (445)
478 cd05191 NAD_bind_amino_acid_DH 93.1 0.24 5.3E-06 35.3 5.0 32 4-35 23-55 (86)
479 COG1250 FadB 3-hydroxyacyl-CoA 93.0 0.14 3.1E-06 45.8 4.5 34 5-38 4-37 (307)
480 PRK09496 trkA potassium transp 93.0 0.12 2.7E-06 49.8 4.4 33 6-38 2-34 (453)
481 COG1893 ApbA Ketopantoate redu 93.0 0.13 2.7E-06 46.7 4.1 33 6-38 2-34 (307)
482 COG0686 Ald Alanine dehydrogen 93.0 0.095 2.1E-06 46.2 3.2 34 4-37 168-201 (371)
483 PLN02353 probable UDP-glucose 93.0 0.13 2.9E-06 49.4 4.5 34 5-38 2-37 (473)
484 cd01339 LDH-like_MDH L-lactate 92.9 0.13 2.8E-06 46.5 4.2 32 7-38 1-33 (300)
485 PRK11880 pyrroline-5-carboxyla 92.9 0.14 3.1E-06 45.5 4.4 33 5-37 3-38 (267)
486 PRK00683 murD UDP-N-acetylmura 92.9 0.14 3E-06 48.8 4.6 34 5-38 4-37 (418)
487 TIGR02853 spore_dpaA dipicolin 92.9 0.16 3.4E-06 45.6 4.6 33 5-37 152-184 (287)
488 TIGR02441 fa_ox_alpha_mit fatt 92.9 0.11 2.5E-06 52.9 4.1 34 5-38 336-369 (737)
489 PRK05476 S-adenosyl-L-homocyst 92.9 0.18 3.8E-06 47.6 5.0 35 4-38 212-246 (425)
490 PRK02472 murD UDP-N-acetylmura 92.9 0.15 3.2E-06 49.1 4.8 33 5-37 6-38 (447)
491 PRK03803 murD UDP-N-acetylmura 92.8 0.16 3.4E-06 49.0 4.9 38 1-38 3-40 (448)
492 PRK08223 hypothetical protein; 92.8 0.18 4E-06 44.7 4.8 35 4-38 27-62 (287)
493 PRK07502 cyclohexadienyl dehyd 92.8 0.14 3.1E-06 46.5 4.2 33 5-37 7-41 (307)
494 PRK10669 putative cation:proto 92.7 0.14 2.9E-06 50.9 4.4 34 5-38 418-451 (558)
495 cd01078 NAD_bind_H4MPT_DH NADP 92.6 0.21 4.5E-06 41.9 4.8 32 5-36 29-61 (194)
496 TIGR00872 gnd_rel 6-phosphoglu 92.6 0.15 3.3E-06 46.1 4.2 33 6-38 2-34 (298)
497 cd05290 LDH_3 A subgroup of L- 92.6 0.19 4.1E-06 45.5 4.7 33 6-38 1-35 (307)
498 PRK00421 murC UDP-N-acetylmura 92.6 0.15 3.2E-06 49.4 4.3 35 4-38 7-42 (461)
499 PRK15461 NADH-dependent gamma- 92.5 0.16 3.5E-06 45.9 4.2 33 6-38 3-35 (296)
500 PRK11199 tyrA bifunctional cho 92.5 0.19 4E-06 47.0 4.7 32 5-36 99-131 (374)
No 1
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-47 Score=355.31 Aligned_cols=359 Identities=26% Similarity=0.397 Sum_probs=279.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+||||||+|+++|+.|++.|++|+|+||++.+...++++.+++++++.|+.+|+.+.+...+.+...+.+++. .+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~-~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDD-KGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcC-CCC
Confidence 3899999999999999999999999999999998888889999999999999999999988877777777777654 333
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
......+.. ....+.++|..|.+.|.+.+++.+++++++|++++.+++++++++.+|+++++|+||+|||.+|.+
T Consensus 80 ~~~~~~~~~-----~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 80 LLNKVKLKS-----NTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred EEeeccccc-----CCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 322222211 223457999999999999988889999999999998888899999999999999999999999999
Q ss_pred HhhhCCCC-CcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcC-cccccChHHHHHH
Q 015303 165 AKWLGFKN-PAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD-KELEDHSAELKQF 242 (409)
Q Consensus 165 r~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 242 (409)
|+.++... ..+.+..++.+.+...... .......++..++.++++|..++..+|.+........ ..... ..+.
T Consensus 155 R~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 229 (373)
T PRK06753 155 RQSVNADSKVRYQGYTCFRGLIDDIDLK-LPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSF----GKPH 229 (373)
T ss_pred HHHhCCCCCceEcceEEEEEEecccccc-CccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccc----cHHH
Confidence 99986543 3345566666654432211 1223344555566788999999988887765433221 11111 2345
Q ss_pred HHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHH
Q 015303 243 VLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCIN 322 (409)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~ 322 (409)
+.+.+..+++.+..+++......+..++.....+ .++|..+|++|||||||.++|+.|||+|+||+||..|++.|.
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~ 305 (373)
T PRK06753 230 LQAYFNHYPNEVREILDKQSETGILHHDIYDLKP----LKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN 305 (373)
T ss_pred HHHHHhcCChHHHHHHHhCCcccceeeccccccc----cccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence 6666778888888888765433333333333222 236788999999999999999999999999999999999995
Q ss_pred HHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHhhhhh
Q 015303 323 EALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVGLL 395 (409)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 395 (409)
. . ...++|+.|++.|++++..+++.+..+..+++...+....+|+.+++.......
T Consensus 306 ~----~-------------~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~ 361 (373)
T PRK06753 306 A----Y-------------DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMPNALA 361 (373)
T ss_pred h----c-------------cHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCChhhh
Confidence 4 1 457899999999999999999999999999999898999999999987644443
No 2
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=4.7e-47 Score=354.93 Aligned_cols=359 Identities=25% Similarity=0.302 Sum_probs=270.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCC-CCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS-ESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.+||+||||||+|+++|+.|++.|++|+|+|+. ......++++.+++.+++.|+++|+.+.+...+........++...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 479999999999999999999999999999998 4556677999999999999999999888887776555555544322
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec-CCcEEeccEEEecC
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA-DGTILKTKVLIGCD 158 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~~~ad~vV~Ad 158 (409)
. . .+.++..........+++.+..|.+.|.+.+ ++++++++++|+.++.+++.+.+++. +|++++||+||+||
T Consensus 82 ~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 82 R-R--LLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred c-e--eEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 2 1 2223222222245567899999999999877 34899999999999999999889988 99999999999999
Q ss_pred CCchHHHhhhCCC-CCc-ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccCh
Q 015303 159 GVNSIVAKWLGFK-NPA-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236 (409)
Q Consensus 159 G~~S~vr~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (409)
|.+|.+|+.++.. ... .+.+..+...+..+.++ ......++.+...+.++|++++....++.............+.
T Consensus 159 G~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T COG0654 159 GANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPH--EGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD 236 (387)
T ss_pred CCchHHHHhcCCCCccCCCCCceEEEEEeecCCCC--CCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCH
Confidence 9999999999833 333 35555555555554222 3334445555557889999965544444443333333355666
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV 316 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~ 316 (409)
+.+..++.+.+....+ .. ...........+.. ...+.+|..+|++|+|||||+++|++|||+|+|++||..
T Consensus 237 ~~~~~~l~~~~~~~~~-~~---~~~~~~~~~~~pl~-----~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~ 307 (387)
T COG0654 237 EEFLRELQRRLGERDP-LG---RVTLVSSRSAFPLS-----LRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAA 307 (387)
T ss_pred HHHHHHHHHhcCcccc-cc---eEEEcccccccccc-----chhhhheecCcEEEEeeccccCCCccccchhhhhhhHHH
Confidence 6666666665543222 11 01111222222322 234447788999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303 317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389 (409)
Q Consensus 317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 389 (409)
|+++|.++.+.. ++ .++|+.|+++|++++..++..+..+...+....+...++|+..++.
T Consensus 308 La~~L~~~~~~~------------~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~ 367 (387)
T COG0654 308 LAEALAAAPRPG------------AD-AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRL 367 (387)
T ss_pred HHHHHHHHhhcC------------cc-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHh
Confidence 999999988742 12 8999999999999999999999999999999999999999999985
No 3
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=351.99 Aligned_cols=363 Identities=18% Similarity=0.224 Sum_probs=269.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.||+||||||+|+++|+.|+++|++|+|+||.+.....+.++.+++++++.|+++|+++.+.+.+.+...+.+++. .+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDP-TGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcC-CCC
Confidence 3899999999999999999999999999999988777778888999999999999999999888877777777653 344
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCC-ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
....++..............+.|..|.+.|.+.+++ ++++++++|+++++++++++|++++|+++++|+||+|||.+|.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 333343332221112234579999999999887654 8999999999999988899999999999999999999999999
Q ss_pred HHhhhCCCCCc---ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHH
Q 015303 164 VAKWLGFKNPA---FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELK 240 (409)
Q Consensus 164 vr~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409)
+|+.+...... +.+...+......... .....+..+.+++..+.++|.+++...+++....+... ...+.+...
T Consensus 160 vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 236 (391)
T PRK07588 160 VRRLVFGPERDFEHYLGCKVAACVVDGYRP-RDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDN--PPLTPAEEK 236 (391)
T ss_pred chhhccCCccceEEEcCcEEEEEEcCCCCC-CCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCcc--ccCCHHHHH
Confidence 99986322221 2222222221211111 11223455666777889999988876555554433221 234556677
Q ss_pred HHHHHHhCCCChHHHHHHHcCCCC-ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHH
Q 015303 241 QFVLGKLHDLPAQVKAVIEKTPLD-SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLAR 319 (409)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~ 319 (409)
+.+.+.+..+.+....+++..... .+...+. .....++|..+|++|+|||||.++|+.|||+|+||+||..|++
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~ 311 (391)
T PRK07588 237 QLLRDQFGDVGWETPDILAALDDVEDLYFDVV-----SQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAG 311 (391)
T ss_pred HHHHHHhccCCccHHHHHHhhhcccchheeee-----eeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHH
Confidence 888888877666554544432211 1111111 1112347889999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHh
Q 015303 320 CINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL 391 (409)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~ 391 (409)
.|..... ....+|+.|++.|++++..++..++.+..+++..++....+|+..++.+-
T Consensus 312 ~L~~~~~---------------~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 312 ELARAGG---------------DHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHhccC---------------CHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc
Confidence 9976211 45789999999999999999999999999999999999999999988543
No 4
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=4.5e-46 Score=350.57 Aligned_cols=366 Identities=20% Similarity=0.227 Sum_probs=265.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+||||||+|+++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+++++.+.+.......+.+.....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 58999999999999999999999999999999888888999999999999999999999998766655444443322211
Q ss_pred cccccccccc-cccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec---CCcEEeccEEEec
Q 015303 85 PSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA---DGTILKTKVLIGC 157 (409)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~---~g~~~~ad~vV~A 157 (409)
.......... .......+..+.|..|.+.|.+.+ ++++++++++|++++++++++.+++. +++++++|+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA 162 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC 162 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence 1111111111 011122334689999999999876 36899999999999988888888773 3457999999999
Q ss_pred CCCchHHHhhhCCCCCcccceeeEEEeecCCCCCC-------CCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCc
Q 015303 158 DGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHG-------FEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK 230 (409)
Q Consensus 158 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (409)
||.+|.+|+.++...+.+.+..++++.+....... .......+++++..+.++|++++..++++.+..+....
T Consensus 163 DG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (400)
T PRK06475 163 DGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPG 242 (400)
T ss_pred CCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCc
Confidence 99999999999776666777888887765432110 11224556677778899999987665555443322211
Q ss_pred ccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhh
Q 015303 231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA 310 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~a 310 (409)
. ........+++.+.+..|.+.+..+++... ....+++....+. +.|..+|++|||||||.++|+.|||+|+|
T Consensus 243 ~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~----~~~~~grvvLiGDAAH~~~P~~GqG~n~a 315 (400)
T PRK06475 243 E-VWSKTGDKAHLKSIYADWNKPVLQILAAID--EWTYWPLFEMADA----QFVGPDRTIFLGDASHAVTPFAAQGAAMA 315 (400)
T ss_pred c-cCCCCCCHHHHHHHhcCCChHHHHHHhcCC--ceeECcCcccCCC----cceecCCEEEEecccccCCchhhhhHHHH
Confidence 1 111111245677778899999888887653 3344555443322 13457899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303 311 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 390 (409)
Q Consensus 311 l~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 390 (409)
|+||..|+++|.. . ....+|+.|++.|++++..++..++....+++. ++.....|+..++..
T Consensus 316 ieDa~~La~~L~~----~-------------~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~-~~~~~~~r~~~~~~~ 377 (400)
T PRK06475 316 IEDAAALAEALDS----D-------------DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHA-TGIFALGRNMLFAIR 377 (400)
T ss_pred HHHHHHHHHHHhc----C-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhc
Confidence 9999999999963 1 356899999999999999999999755544444 445677798888754
Q ss_pred hhhhh
Q 015303 391 LVGLL 395 (409)
Q Consensus 391 ~~~~~ 395 (409)
.+..+
T Consensus 378 ~~~~~ 382 (400)
T PRK06475 378 SPESF 382 (400)
T ss_pred Chhhh
Confidence 44333
No 5
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=2.5e-46 Score=353.14 Aligned_cols=362 Identities=17% Similarity=0.192 Sum_probs=259.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC-CCcC----CcccceeccccHHHHHHHcCchhHHHhc-cccccc
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS-ESLR----VTGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRS 74 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~-~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~ 74 (409)
||..+||+||||||+|+++|+.|+++|++|+|+|+. +.+. ...++..++++++++|+++|+++.+.+. ..+...
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 80 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIA 80 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccE
Confidence 677899999999999999999999999999999996 3221 2357788999999999999999999764 566666
Q ss_pred eeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEec
Q 015303 75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKT 151 (409)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a 151 (409)
+.+++... .....+...........+.+.+..|.+.|.+.+ ++++++++++|++++.+++.+.|++.+|++++|
T Consensus 81 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a 157 (405)
T PRK08850 81 MEVWEQDS---FARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTA 157 (405)
T ss_pred EEEEeCCC---CceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEe
Confidence 66654321 112222221111122345678888888888765 468999999999999888889999999999999
Q ss_pred cEEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe-EEEEEEecCCCcC
Q 015303 152 KVLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYWFFTWTSSSQD 229 (409)
Q Consensus 152 d~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 229 (409)
|+||+|||.+|.+|+.++...... ++..++.+.+....++ ......++.+++.+.++|+.++. +.++.........
T Consensus 158 ~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~ 235 (405)
T PRK08850 158 KLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPH--NSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAE 235 (405)
T ss_pred CEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCC--CCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHH
Confidence 999999999999999998775432 4556666666543322 22233455665678889998653 3333332221111
Q ss_pred cccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303 230 KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA 309 (409)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~ 309 (409)
.....+.+++.+.+.+.+.. .+.. ++. ......+|... ...++|..+|++|+|||||.++|+.|||+|+
T Consensus 236 ~~~~~~~~~~~~~l~~~~~~---~~~~-~~~--~~~~~~~pl~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ 304 (405)
T PRK08850 236 ALLAMSDEQFNKALTAEFDN---RLGL-CEV--VGERQAFPLKM-----RYARDFVRERVALVGDAAHTIHPLAGQGVNL 304 (405)
T ss_pred HHHcCCHHHHHHHHHHHHhh---hhCc-EEE--cccccEEecce-----eeccccccCcEEEEEhhhhcCCccccccHHH
Confidence 11233444555555554321 1100 000 01111222221 1234788999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhh-ccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303 310 ALEDGIVLARCINEALK-TKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388 (409)
Q Consensus 310 al~~a~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 388 (409)
||+||..|+++|..... +.++ ....+|+.|+++|++++..++..++.+.++++..++...++|+.++.
T Consensus 305 ai~Da~~La~~L~~~~~~~~~~-----------~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~ 373 (405)
T PRK08850 305 GLLDAASLAQEILALWQQGRDI-----------GLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMS 373 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-----------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 99999999999998764 2211 24689999999999999999999999999999999999999999987
Q ss_pred H
Q 015303 389 S 389 (409)
Q Consensus 389 ~ 389 (409)
.
T Consensus 374 ~ 374 (405)
T PRK08850 374 L 374 (405)
T ss_pred H
Confidence 4
No 6
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-46 Score=351.99 Aligned_cols=359 Identities=17% Similarity=0.196 Sum_probs=252.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc------ccceeccccHHHHHHHcCchhHHHhc-cccccce
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT------GFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSI 75 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~ 75 (409)
+++||+||||||+|+++|+.|+++|++|+|+|+.+.+... .++..+++.++++|+++|+++.+.+. ..+....
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~ 81 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence 3589999999999999999999999999999998875421 25567899999999999999998765 4566666
Q ss_pred eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303 76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTK 152 (409)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 152 (409)
.+++... .....+...........+.+.|..|.+.|.+.+ ++++++++++|++++++++.+++++.+|++++||
T Consensus 82 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 158 (400)
T PRK08013 82 EVWDKDS---FGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR 158 (400)
T ss_pred EEEeCCC---CceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence 6654321 112222221111122346899999999998866 3689999999999998888999999999999999
Q ss_pred EEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe-EEEEEEecCCCcCc
Q 015303 153 VLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYWFFTWTSSSQDK 230 (409)
Q Consensus 153 ~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~ 230 (409)
+||+|||.+|.+|+.++.+.... +...++.+.+....++. ......|.+++ +++++|..++. ..++.....+....
T Consensus 159 lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~ 236 (400)
T PRK08013 159 LVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHD-AVARQVFHGDG-ILAFLPLSDPHLCSIVWSLSPEEAQR 236 (400)
T ss_pred EEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCC-CEEEEEEcCCC-CEEEEECCCCCeEEEEEEcCHHHHHH
Confidence 99999999999999998875543 34444454444333221 12233444444 77888997754 33333322211111
Q ss_pred ccccChHHHHHHHHHHhCCCChHHHHHHHcCCC-CceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303 231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA 309 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~ 309 (409)
....+.+.+.+.+...+ .+. +..... .....++.... ..++|..+||+|+|||||.++|+.|||+|+
T Consensus 237 ~~~~~~~~~~~~l~~~~---~~~----l~~~~~~~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ 304 (400)
T PRK08013 237 MQQAPEEEFNRALAIAF---DNR----LGLCELESERQVFPLTGR-----YARQFAAHRLALVGDAAHTIHPLAGQGVNL 304 (400)
T ss_pred HHcCCHHHHHHHHHHHH---hHh----hCceEecCCccEEeccee-----ecccccCCcEEEEechhhcCCccccCchhh
Confidence 11223333333333221 111 110000 11112222221 245789999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcc-CCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303 310 ALEDGIVLARCINEALKTK-QGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388 (409)
Q Consensus 310 al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 388 (409)
||+||..|+++|...+... ++ ....+|++|+++|++++..++..++.+..++++.++...++|+++++
T Consensus 305 gi~Da~~La~~L~~~~~~~~~~-----------~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~l~ 373 (400)
T PRK08013 305 GFMDAAELIAELRRLHRQGKDI-----------GQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLK 373 (400)
T ss_pred hHHHHHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 9999999999999876432 11 12357999999999999999999999999999999999999999887
Q ss_pred H
Q 015303 389 S 389 (409)
Q Consensus 389 ~ 389 (409)
.
T Consensus 374 ~ 374 (400)
T PRK08013 374 L 374 (400)
T ss_pred H
Confidence 4
No 7
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=1.1e-46 Score=331.52 Aligned_cols=399 Identities=38% Similarity=0.547 Sum_probs=311.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
-+|+|||||++||++|++|+|.|++|+|+|++..++..+.++.+.-+++++|+.+|+.+.+.+.+.+..+....+..++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg~ 82 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSGK 82 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCCC
Confidence 48999999999999999999999999999999999988999999999999999999999999999999887777777777
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCC------eEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSS------QVVSIEESGHFKLLHLADGTILKTKVLIGCD 158 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~------~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 158 (409)
....+.+.... .+...++.|..+.+.|.++.+..+|+|+. ....++..+....+++.+|.++++|++|+||
T Consensus 83 ~~~~~~~~~~~---~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCD 159 (420)
T KOG2614|consen 83 EVSRILYGEPD---EYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCD 159 (420)
T ss_pred eeEecccCCch---HHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcC
Confidence 66677666443 22334567777778888877776777764 4555666666678899999999999999999
Q ss_pred CCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHH
Q 015303 159 GVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAE 238 (409)
Q Consensus 159 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (409)
|++|.||++++...|.+.+.+++++...++..+++......+.+++.+++..|.....++|.....-.........+++.
T Consensus 160 Ga~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~ 239 (420)
T KOG2614|consen 160 GAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEK 239 (420)
T ss_pred chHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHH
Confidence 99999999999988999999999998887777766444444445555555555555556666532222222223445666
Q ss_pred HHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHH
Q 015303 239 LKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLA 318 (409)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la 318 (409)
++....+....++..+.++++-...+.+...+...+.|++..+.....++|+|+|||||.|-|+.|||+|+|++|+..||
T Consensus 240 l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa 319 (420)
T KOG2614|consen 240 LKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLA 319 (420)
T ss_pred HhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHH
Confidence 67677777778889999999998888888888999999988888778889999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCch--hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchh--HHHHHHHHHHHHhhhh
Q 015303 319 RCINEALKTKQGVGEEDE--EEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKI--LNFLRDKILASFLVGL 394 (409)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~ 394 (409)
++|.++.......+..-+ ..+....+.++..|...|..+.-.....+.....+-+...|+ .-++|+..+...+.+.
T Consensus 320 ~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~l~~m~~F~d~~ys~~l~~~ 399 (420)
T KOG2614|consen 320 ECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGPLYLMVSFRDIIYSEALERL 399 (420)
T ss_pred HHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccccchhhccchhhhhHHHHHHHH
Confidence 999998762111111111 122333788999999999998888888887777777888887 6677788887777777
Q ss_pred hcccccCCCCcc
Q 015303 395 LLKKADFDCGNL 406 (409)
Q Consensus 395 ~~~~~~~~~g~~ 406 (409)
..+...+.+|-.
T Consensus 400 ~~~~~~~~~g~~ 411 (420)
T KOG2614|consen 400 GIKKKILNDGSF 411 (420)
T ss_pred Hhhhhhhcccch
Confidence 766666666543
No 8
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.6e-45 Score=347.59 Aligned_cols=379 Identities=24% Similarity=0.307 Sum_probs=278.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
|+++.||+||||||+|+++|+.|++.|++|+|+||.+.+...++++.+++++.++|+++|+++.+.+.+.....+.+++.
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 80 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDA 80 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeC
Confidence 77889999999999999999999999999999999998888889999999999999999999998877776777766654
Q ss_pred CCCCccccccccccc-ccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303 81 ISGKPSSERSLKVQG-KYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG 156 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 156 (409)
..+.....++..... .........+.|..|.+.|.+.+. +++++++++|++++.+++++.+++.+|++++||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 81 VDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEE
Confidence 444443333322110 111223457899999999998763 4789999999999988888999999998999999999
Q ss_pred cCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCC--CCceeeeecCCcEEEEEecCCCeEE-EEEEecCCCcCcccc
Q 015303 157 CDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGF--EPNFLQFFGKGLRSGFIPCDDQTIY-WFFTWTSSSQDKELE 233 (409)
Q Consensus 157 AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~ 233 (409)
|||.+|.+|+.+....+.+.+...+.+.+.....+.. ......+.+++.+++++|..++..+ +++.+..+.... .
T Consensus 161 AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~- 238 (396)
T PRK08163 161 CDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEE-W- 238 (396)
T ss_pred CCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcc-c-
Confidence 9999999999873224445566666666553322111 1223445566777888999877543 333332221111 0
Q ss_pred cChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhH
Q 015303 234 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALED 313 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~ 313 (409)
.......+.+.+.+..+.+.+..+++... .+..+......| .++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~D 312 (396)
T PRK08163 239 GVKDGSKEEVLSYFEGIHPRPRQMLDKPT--SWKRWATADREP----VAKWSTGRVTLLGDAAHPMTQYMAQGACMALED 312 (396)
T ss_pred ccCCCCHHHHHHHHcCCChHHHHHHhcCC--ceeEccccCCCc----ccccccCcEEEEecccccCCcchhccHHHHHHH
Confidence 01111245677888888888888876532 222222222222 347788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHhhh
Q 015303 314 GIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLVG 393 (409)
Q Consensus 314 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 393 (409)
|..|++.|... . +....+|+.|+++|++++..++..++.+..+++.. ....++|+..+....+.
T Consensus 313 a~~La~~L~~~--~-------------~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~~~~ 376 (396)
T PRK08163 313 AVTLGKALEGC--D-------------GDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK-GVERQVRNLLWKGRTQE 376 (396)
T ss_pred HHHHHHHHHhc--c-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-CHHHHHHHHHhhccChh
Confidence 99999999752 1 25688999999999999999999999999998866 46888899888765555
Q ss_pred hhcccccCCC
Q 015303 394 LLLKKADFDC 403 (409)
Q Consensus 394 ~~~~~~~~~~ 403 (409)
.......++.
T Consensus 377 ~~~~~~~~~~ 386 (396)
T PRK08163 377 QFYDALEWLY 386 (396)
T ss_pred hhhhhcCccc
Confidence 4444444443
No 9
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=2.9e-45 Score=340.48 Aligned_cols=359 Identities=16% Similarity=0.128 Sum_probs=257.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.++.+++++++.|+++|+++.+.+.+.......+++. .+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~-~g~ 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR-DGN 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC-CCC
Confidence 3899999999999999999999999999999998888888899999999999999999999887777777776653 333
Q ss_pred cccccccc-cccccCCccceeccHHHHHHHHHhhC-CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 85 PSSERSLK-VQGKYGEHEMRCVRRKLLLETLAKEL-PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~-~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
.+...... ..+.........+.|..|.+.|.+.. .+++++++++|++++++++.+++++.+|+++++|+||+|||.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S 160 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS 160 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc
Confidence 22211110 01111112234678999999887765 46899999999999988888999999999999999999999999
Q ss_pred HHHhhhCCCCCc-ccceeeEEEeecCCCCCCCCCceee-eecCCcEEEEEecCCCeE-EEEEEecCCCcCcccccChHHH
Q 015303 163 IVAKWLGFKNPA-FVGRSAIRGYSDFKGSHGFEPNFLQ-FFGKGLRSGFIPCDDQTI-YWFFTWTSSSQDKELEDHSAEL 239 (409)
Q Consensus 163 ~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 239 (409)
.+|+.+...... ......+..++..+..... ..+.. +++++.++.++|..++.. ..++.+....... .....+..
T Consensus 161 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 238 (372)
T PRK05868 161 NVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRI-DYRDTEAQ 238 (372)
T ss_pred hHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCCCceEEEEEEecCCccc-ccCChHHH
Confidence 999998433322 2222222333333332221 22333 457777888899886533 3344443322111 11223445
Q ss_pred HHHHHHHhC--CCC-hHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303 240 KQFVLGKLH--DLP-AQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV 316 (409)
Q Consensus 240 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~ 316 (409)
++.+.+.+. .|. +.+.+.+... ..+ .++... ....++|..+||+|||||||.++|+.|||+|+||+||..
T Consensus 239 ~~~l~~~f~~~~w~~~~l~~~~~~~--~~~-~~~~~~----~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~ 311 (372)
T PRK05868 239 FAELQRRMAEDGWVRAQLLHYMRSA--PDF-YFDEMS----QILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYI 311 (372)
T ss_pred HHHHHHHHhhCCCchHHHHhhcccC--Cce-eeccce----EEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHH
Confidence 677777776 344 3333333211 111 121111 122348899999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303 317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388 (409)
Q Consensus 317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 388 (409)
||++|... . ++.+++|+.|++.++++....+.........+.+.+.+..++|+..+.
T Consensus 312 La~~L~~~--~-------------~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~ 368 (372)
T PRK05868 312 LAGELKAA--G-------------DDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSIT 368 (372)
T ss_pred HHHHHHhc--C-------------CCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhcccc
Confidence 99999762 1 257899999999999999999999999999999999999999876653
No 10
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=8.2e-46 Score=345.50 Aligned_cols=346 Identities=18% Similarity=0.181 Sum_probs=249.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc----CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL----RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+||+||||||+|+++|+.|++.|++|+|+|+.+.. ...++++.++++++++|+++|+++.+.....+...+.+++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999987532 23478999999999999999999998877777777777654
Q ss_pred CCCCcccccccccccccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEec
Q 015303 81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGC 157 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~A 157 (409)
. +.....+.. .. .....+.+.|..|.+.|.+.+. +++++++++++++.++++.+++++.++ +++||+||+|
T Consensus 82 ~-g~~~~~~~~--~~--~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgA 155 (374)
T PRK06617 82 K-ASEILDLRN--DA--DAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIIC 155 (374)
T ss_pred C-CceEEEecC--CC--CCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEe
Confidence 3 332222221 11 1223578999999999998763 478999999999999888999999876 7999999999
Q ss_pred CCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe-EEEEEEecCCCcCcccccCh
Q 015303 158 DGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYWFFTWTSSSQDKELEDHS 236 (409)
Q Consensus 158 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~ 236 (409)
||.+|.+|+.++........+.++.+.+....++. ...++.|...| .++++|++++. ..++.....+........+.
T Consensus 156 DG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~-~~~~~~~~~~g-~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~ 233 (374)
T PRK06617 156 DGANSKVRSHYFANEIEKPYQTALTFNIKHEKPHE-NCAMEHFLPLG-PFALLPLKDQYASSVIWSTSSDQAALIVNLPV 233 (374)
T ss_pred CCCCchhHHhcCCCcccccCCeEEEEEEeccCCCC-CEEEEEecCCC-CEEEeECCCCCeEEEEEeCCHHHHHHHHcCCH
Confidence 99999999998766533333566666555433221 22344554555 58889998875 32332222111111112222
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV 316 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~ 316 (409)
+.+.+.+...+ .+.+..+ ........++.... ..++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus 234 ~~~~~~~~~~~---~~~~~~i---~~~~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~ 302 (374)
T PRK06617 234 EEVRFLTQRNA---GNSLGKI---TIDSEISSFPLKAR-----IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEI 302 (374)
T ss_pred HHHHHHHHHhh---chhcCce---eeccceeEEEeeee-----eccceecCCEEEEEcccccCCCCccccHHHHHHHHHH
Confidence 23322222211 1111111 01112333343332 2347889999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303 317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389 (409)
Q Consensus 317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 389 (409)
|+++|.. ..+|++|+++|++++..++..+..+.++++...+...++|+.++..
T Consensus 303 La~~L~~--------------------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~ 355 (374)
T PRK06617 303 LSMIVSN--------------------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKV 355 (374)
T ss_pred HHHHHcC--------------------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 9998832 1579999999999999999999999999999999999999999874
No 11
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=2.9e-45 Score=348.03 Aligned_cols=366 Identities=18% Similarity=0.200 Sum_probs=260.3
Q ss_pred ccEEEECCChHHHHHHHHHHH----cCCceEEEeCCCCcCC------------cccceeccccHHHHHHHcCchhHHHhc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYR----LGIRSMVLESSESLRV------------TGFAFTVWTNAWKALDAVGIGNSLRQQ 68 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~----~g~~V~v~E~~~~~~~------------~~~~~~~~~~~~~~l~~~gl~~~~~~~ 68 (409)
|||+||||||+|+++|+.|++ +|++|+|||+++.+.. .++++.+++.++++|+.+|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 8999999999654432 357899999999999999999999765
Q ss_pred c-ccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---C--CceEEeCCeEEEEEEe-------
Q 015303 69 H-QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---P--SGTIRYSSQVVSIEES------- 135 (409)
Q Consensus 69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~--~~~i~~~~~v~~i~~~------- 135 (409)
. .+...+.+++.. +. ....+.... ......+.+.+..|.+.|.+.+ + +++++++++|++++.+
T Consensus 81 ~~~~~~~~~~~~~~-~~--~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~ 156 (437)
T TIGR01989 81 RIQPFGRMQVWDGC-SL--ALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDN 156 (437)
T ss_pred cCCceeeEEEecCC-CC--ceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCC
Confidence 3 455556555432 21 123333211 1123356789999998888765 3 4799999999999752
Q ss_pred CCeEEEEecCCcEEeccEEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCC
Q 015303 136 GHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDD 214 (409)
Q Consensus 136 ~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 214 (409)
++.++|++.+|++++||+||+|||.+|.+|+.++...... +.+.++.+.+...........++.|.. ++.++++|+++
T Consensus 157 ~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~-~g~~~~lPl~~ 235 (437)
T TIGR01989 157 SNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLP-TGPIALLPLPD 235 (437)
T ss_pred CCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECC-CCCEEEeECCC
Confidence 4568999999999999999999999999999998876654 344455555554332222334455554 44688899998
Q ss_pred CeEEEEEEecCCCcCcccccChHHHHHHHHHHhC----CCCh------HHHHHHH--------------------cCCCC
Q 015303 215 QTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLH----DLPA------QVKAVIE--------------------KTPLD 264 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~--------------------~~~~~ 264 (409)
+..+|+..............+.+++.+.+.+.+. .++. .+..+.+ .....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (437)
T TIGR01989 236 NNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDK 315 (437)
T ss_pred CCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhheeecc
Confidence 8766655543332222234556666666655551 1100 0000000 00000
Q ss_pred ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhcc-CCCCCCchhhhhhhH
Q 015303 265 SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTK-QGVGEEDEEEFNKRV 343 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~ 343 (409)
....+++.. ..+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|..+.+.. ++ ..
T Consensus 316 ~~~~~~~~~-----~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~-----------~~ 379 (437)
T TIGR01989 316 SRAAFPLGL-----GHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADI-----------GS 379 (437)
T ss_pred cceeEEecc-----cchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCCh-----------hH
Confidence 001122211 12347889999999999999999999999999999999999999887542 11 22
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHh
Q 015303 344 EMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFL 391 (409)
Q Consensus 344 ~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~ 391 (409)
..+|+.|+++|++++..++..++.+.++++...+...++|++++..+.
T Consensus 380 ~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~ 427 (437)
T TIGR01989 380 ISSLKPYERERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTN 427 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999998543
No 12
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=3e-44 Score=336.55 Aligned_cols=363 Identities=23% Similarity=0.324 Sum_probs=269.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
|.+..||+||||||+|+++|+.|++.|++|+|+|+.+.+...+.++.+++++++.|+++|+.+.+.+.+.+.....+++.
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 66778999999999999999999999999999999988888889999999999999999999998887777777666643
Q ss_pred CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303 81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD 158 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 158 (409)
.+..+..++..............+.|..|.+.|.+.+ .+++++++++|++++.+++.+.+++.+|+++++|+||+||
T Consensus 81 -~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 81 -DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred -CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 3333322222111111112234688999999998866 3689999999999998888899999999999999999999
Q ss_pred CCchHHHhhh-CCC-CCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccCh
Q 015303 159 GVNSIVAKWL-GFK-NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHS 236 (409)
Q Consensus 159 G~~S~vr~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (409)
|.+|.+|+.+ +.. .+.+.+..++.+.+..+. . ......+.+++..+.++|.+++..++++....+.. ...+.
T Consensus 160 G~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~ 233 (375)
T PRK06847 160 GLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA--E-VDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDN---PRIEP 233 (375)
T ss_pred CCCcchhhHhcCCCCCceeccceEEEEEecCCC--C-ccceEEEeCCCcEEEEEcCCCCeEEEEEeccCccc---ccCCh
Confidence 9999999987 443 344556666665544322 1 12235566777788899998887655544332221 23345
Q ss_pred HHHHHHHHHHhCCCCh-HHHHHHHcCC-CCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303 237 AELKQFVLGKLHDLPA-QVKAVIEKTP-LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG 314 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a 314 (409)
+.+.+.+.+.+..+++ ....+.+... ...+...+.....+ ..+|..+|++|+|||||.++|++|||+|+||+||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA 309 (375)
T PRK06847 234 DTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLV----PAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDA 309 (375)
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccC----CCCccCCeEEEEechhccCCCCccccHHHHHHHH
Confidence 5566777777777765 3444443221 12222333332221 1257889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCch---hHHHHHHHHHHHH
Q 015303 315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGK---ILNFLRDKILASF 390 (409)
Q Consensus 315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~---~~~~~r~~~~~~~ 390 (409)
..|++.|.+. +...++|+.|+++|++++..++..++.+...++...+ ....+|++++..+
T Consensus 310 ~~La~~L~~~----------------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T PRK06847 310 IVLAEELARH----------------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLA 372 (375)
T ss_pred HHHHHHHhhC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhc
Confidence 9999999761 2568899999999999999999999999999876666 6667788777643
No 13
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.2e-44 Score=352.39 Aligned_cols=359 Identities=23% Similarity=0.287 Sum_probs=260.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.++||+||||||+|+++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+.+++...+.+.....+++. .
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-~ 87 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA-K 87 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC-C
Confidence 358999999999999999999999999999999998888889999999999999999999999887777777766643 3
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec--CC--cEEeccEEE
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA--DG--TILKTKVLI 155 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~--~g--~~~~ad~vV 155 (409)
+.....+...............+.+..+.+.|.+.+ ++++++++++|++++++++++++++. +| .+++||+||
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEE
Confidence 433333332111111122234678889998888754 47899999999999999999888886 45 379999999
Q ss_pred ecCCCchHHHhhhCCCCCcccceeeEEE-eecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccccc
Q 015303 156 GCDGVNSIVAKWLGFKNPAFVGRSAIRG-YSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED 234 (409)
Q Consensus 156 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 234 (409)
+|||.+|.+|+.++...........+.. .+..............+++++..+.++|.+++...|.+...+.+... ...
T Consensus 168 gADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~ 246 (538)
T PRK06183 168 GCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLA 246 (538)
T ss_pred ecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcC
Confidence 9999999999999876543322222221 11121111112234455667777888999988877777664433211 112
Q ss_pred ChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303 235 HSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG 314 (409)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a 314 (409)
+.+. +.+.+..+... .....+..... +.. ....+++|..+||+|+|||||.++|+.|||+|+||+||
T Consensus 247 ~~~~----~~~~l~~~~~~-------~~~~~~~~~~~-~~~-~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA 313 (538)
T PRK06183 247 SPEN----VWRLLAPWGPT-------PDDAELIRHAV-YTF-HARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDA 313 (538)
T ss_pred CHHH----HHHHHHhhCCC-------CcceEEEEEEe-eeE-ccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHH
Confidence 2232 33322222100 00011111111 111 11234578899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303 315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389 (409)
Q Consensus 315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 389 (409)
.+|+++|...+++. ..+.+|+.|+++|++++..++..+..+..+++..++....+|+.+++.
T Consensus 314 ~~La~kLa~~~~g~-------------~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~ 375 (538)
T PRK06183 314 ANLAWKLAAVLRGR-------------AGDALLDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRA 375 (538)
T ss_pred HHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHh
Confidence 99999999877653 457899999999999999999999999999999999999999988864
No 14
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.5e-45 Score=346.63 Aligned_cols=360 Identities=20% Similarity=0.222 Sum_probs=252.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC--cccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV--TGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
.++||+||||||+|+++|+.|+++|++|+|+||++.+.. .++++.+++++++.|+++|+++++...+.+.....+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 468999999999999999999999999999999987653 467889999999999999999998877767666666543
Q ss_pred CCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEE
Q 015303 81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVL 154 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~v 154 (409)
. +... ..+...........+...+..|.+.|++++ ++++++++++|++++.+++.+.|++.++ .+++||+|
T Consensus 97 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlv 173 (415)
T PRK07364 97 D-YPGV--VKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLV 173 (415)
T ss_pred C-CCce--eeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEE
Confidence 2 2111 122211111111223344456888887765 4689999999999998888888888643 36999999
Q ss_pred EecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccc
Q 015303 155 IGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE 233 (409)
Q Consensus 155 V~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 233 (409)
|+|||.+|.+|+.++.....+ ....++...+.....+. ...+..|+..+ +++++|.+++...+++....+.......
T Consensus 174 IgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 251 (415)
T PRK07364 174 VAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHN-DIAYERFWPSG-PFAILPLPGNRCQIVWTAPHAQAKALLA 251 (415)
T ss_pred EEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCC-CEEEEEecCCC-CeEEeECCCCCEEEEEECCHHHHHHHHC
Confidence 999999999999997765433 22333344443332221 22233444544 5788999988765544322111111122
Q ss_pred cChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhH
Q 015303 234 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALED 313 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~ 313 (409)
.+.+++.+.+.+.+..+...+. . ......++... ...++|..+|++|||||||.++|++|||+|+||+|
T Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~----~--~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~D 320 (415)
T PRK07364 252 LPEAEFLAELQQRYGDQLGKLE----L--LGDRFLFPVQL-----MQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRD 320 (415)
T ss_pred CCHHHHHHHHHHHhhhhhcCce----e--cCCCceecchh-----hhhhhhcCCcEEEEecccccCCCcccccHhHHHHH
Confidence 3445556666655443222211 0 11112233221 12347889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc-cCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303 314 GIVLARCINEALKT-KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389 (409)
Q Consensus 314 a~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 389 (409)
|..|+++|...+.. .++ ....+|+.|++.|++++..++..++.+.+++..++++..++|+.+++.
T Consensus 321 A~~La~~L~~~~~~~~~~-----------~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 386 (415)
T PRK07364 321 AAALAQVLQTAHQRGEDI-----------GSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWL 386 (415)
T ss_pred HHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 99999999887642 211 124899999999999999999999999999999999999999998774
No 15
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=7.9e-45 Score=343.72 Aligned_cols=362 Identities=20% Similarity=0.256 Sum_probs=258.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcC--CcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLR--VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+||+||||||+|+++|+.|+++| ++|+|+||.+... ..+++..++++++++|+++|+++.+...+.+.....+++.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999996 9999999987643 3578999999999999999999999888877777776654
Q ss_pred CCCCcccc--cccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303 81 ISGKPSSE--RSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG 156 (409)
Q Consensus 81 ~~~~~~~~--~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 156 (409)
..+..... +.+...........+.++|..|.+.|.+.+. +++++++++|++++.+++.+.+++.+|.+++||+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVA 161 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEE
Confidence 33222111 2222111111223457899999999988763 6899999999999998889999999998999999999
Q ss_pred cCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccC
Q 015303 157 CDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 235 (409)
Q Consensus 157 AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (409)
|||.+|.+|+.++...... ++...+.........+ ......++..+.+++++|.++++..+.+.............+
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~ 239 (403)
T PRK07333 162 ADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPH--GGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERLVALD 239 (403)
T ss_pred cCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCC--CCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCC
Confidence 9999999999998765332 3444444444433222 122233444445678899998876554332211110101123
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHH
Q 015303 236 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGI 315 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~ 315 (409)
.+.+.+.+.+.+..+...+. . ......++... ...++|..+||+|+|||||.++|+.|||+|+||+||.
T Consensus 240 ~~~~~~~l~~~~~~~~~~~~----~--~~~~~~~~~~~-----~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~ 308 (403)
T PRK07333 240 DLVFEAELEQRFGHRLGELK----V--LGKRRAFPLGL-----TLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVA 308 (403)
T ss_pred HHHHHHHHHHHhhhhcCceE----e--ccCccEeechh-----hhhhhccCCCEEEEechhhcCCCccccchhhhHHHHH
Confidence 33344445444432211110 0 01111122211 1344788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303 316 VLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389 (409)
Q Consensus 316 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 389 (409)
.|+++|...++.++ .....++|+.|+++|++++..++..++.+..+++..++....+|+.+++.
T Consensus 309 ~La~~L~~~~~~~~----------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 372 (403)
T PRK07333 309 ALAEVVVEAARLGL----------DIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGL 372 (403)
T ss_pred HHHHHHHHHHhcCC----------CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 99999998875310 01357999999999999999999999999999999999999999988764
No 16
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=6.9e-45 Score=343.73 Aligned_cols=359 Identities=19% Similarity=0.257 Sum_probs=252.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc--------CCcccceeccccHHHHHHHcCchhHHHhc-cccccc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL--------RVTGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRS 74 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~--------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~ 74 (409)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.. ....++..++++++++|+++|+++.+.+. ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999998631 12345678999999999999999988753 445566
Q ss_pred eeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303 75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTK 152 (409)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 152 (409)
+.+++.. +. ..+.+...........+.+.+..+.+.|.+.+. +++++++++++++++++++++|++.+|.+++||
T Consensus 82 ~~~~~~~-~~--~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 82 MQVWDGS-GT--GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred EEEEcCC-CC--ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 6665432 21 122332211111223457888899988887653 588999999999999888899999999889999
Q ss_pred EEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe-EEE-EEEecCCCcC
Q 015303 153 VLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT-IYW-FFTWTSSSQD 229 (409)
Q Consensus 153 ~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~~~~~~~~ 229 (409)
+||+|||.+|.+|+.++...+.. +...++...+....++. ...+.. +.++..++++|++++. ..| .+.|..+...
T Consensus 159 ~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~ 236 (405)
T PRK05714 159 LVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHR-ATAWQR-FTDDGPLAFLPLERDGDEHWCSIVWSTTPEE 236 (405)
T ss_pred EEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCC-CEEEEE-cCCCCCeEEeeCCCCCCCCeEEEEEECCHHH
Confidence 99999999999999997765432 22333333333322221 222333 3444578889986432 122 2333322211
Q ss_pred --cccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccch
Q 015303 230 --KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGG 307 (409)
Q Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~ 307 (409)
.....+.+.+.+++.+.+. ..+.+++.. .....++.... ..++|..+||+|+|||||.++|+.|||+
T Consensus 237 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~---~~~~~~~l~~~-----~~~~~~~~rv~LlGDAAH~~~P~~GQG~ 305 (405)
T PRK05714 237 AERLMALDDDAFCAALERAFE---GRLGEVLSA---DPRLCVPLRQR-----HAKRYVEPGLALIGDAAHTIHPLAGQGV 305 (405)
T ss_pred HHHHHCCCHHHHHHHHHHHHH---HHhCCceec---CCccEEeccee-----ehhhhccCCEEEEEeccccCCCcccccc
Confidence 1122344455555555432 222222211 12223333332 2457889999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhcc-CCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHH
Q 015303 308 CAALEDGIVLARCINEALKTK-QGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKI 386 (409)
Q Consensus 308 ~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~ 386 (409)
|+||+||..|+++|..+.... ++ ....+|+.|++.|++++..++..++.+.++++..++...++|+..
T Consensus 306 n~al~DA~~La~~L~~~~~~g~~~-----------~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~ 374 (405)
T PRK05714 306 NLGFLDAAVLAEVLLHAAERGERL-----------ADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTG 374 (405)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 999999999999998765421 11 235899999999999999999999999999999999999999999
Q ss_pred HHH
Q 015303 387 LAS 389 (409)
Q Consensus 387 ~~~ 389 (409)
++.
T Consensus 375 l~~ 377 (405)
T PRK05714 375 LKL 377 (405)
T ss_pred HHH
Confidence 873
No 17
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=2.7e-44 Score=340.24 Aligned_cols=357 Identities=21% Similarity=0.282 Sum_probs=259.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccc----ccceeeee
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQ----LRSIVATP 79 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~~~~~~~ 79 (409)
.+|+||||||+||++|+.|+++| ++|+|+||.+.+...|.++.++|++++.|+++|+.+.+...... .....+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 69999999998888899999999999999999998877654421 11111111
Q ss_pred cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303 80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG 159 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 159 (409)
..+.....+.... ........+.|..|.+.|.+.+++..++++++|++++.+++++++++.+|.++++|+||+|||
T Consensus 81 -~~~~~~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG 156 (414)
T TIGR03219 81 -RNGSDASYLGATI---APGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADG 156 (414)
T ss_pred -EecCccceeeeec---cccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCC
Confidence 1111111111100 001122368999999999999887889999999999998888999999999999999999999
Q ss_pred CchHHHhhhCC------CCCcccceeeEEEeecCCCC----------CCCCCceeeeecCCcEEEEEecCCCeEEEEEEe
Q 015303 160 VNSIVAKWLGF------KNPAFVGRSAIRGYSDFKGS----------HGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTW 223 (409)
Q Consensus 160 ~~S~vr~~l~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 223 (409)
.+|.+|+.+.. ..+.+.+..++.+.+..... .........+++.+.++.++|..++..++++.+
T Consensus 157 ~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 236 (414)
T TIGR03219 157 IKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAF 236 (414)
T ss_pred ccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEE
Confidence 99999998731 23445677777776542110 001112345667777888899988875443333
Q ss_pred cCCCcC------cccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcC
Q 015303 224 TSSSQD------KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALH 297 (409)
Q Consensus 224 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~ 297 (409)
...... .......+...+.+.+.+..|++.+.++++...... .+++....+ .++|..+||+|+|||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~----~~~w~~grv~LiGDAAH 310 (414)
T TIGR03219 237 ISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPT--LWALHDLAE----LPGYVHGRVALIGDAAH 310 (414)
T ss_pred EcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCC--ceeeeeccc----ccceeeCcEEEEEcccC
Confidence 222110 001112233456778888899999998888654322 233332222 33788999999999999
Q ss_pred CCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCch
Q 015303 298 PMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGK 377 (409)
Q Consensus 298 ~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 377 (409)
.+.|+.|||+|+||+||..|++.|.....+ .+.++.+|+.|++.|++++..+++.|+.+..+++..++
T Consensus 311 ~m~P~~GqGa~~AieDA~~La~~L~~~~~~------------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~ 378 (414)
T TIGR03219 311 AMLPHQGAGAGQGLEDAYFLARLLGDTELE------------AGDLPALLEAYDDVRRPRACRVQRTSREAGELYELRDP 378 (414)
T ss_pred CCCCCcCcchHhHHHHHHHHHHHHHhhccC------------cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999999875432 13678999999999999999999999999999887666
Q ss_pred hHHHHH
Q 015303 378 ILNFLR 383 (409)
Q Consensus 378 ~~~~~r 383 (409)
.....+
T Consensus 379 ~~~~~~ 384 (414)
T TIGR03219 379 AVGADE 384 (414)
T ss_pred hccCcH
Confidence 554433
No 18
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=8.7e-45 Score=342.04 Aligned_cols=363 Identities=18% Similarity=0.207 Sum_probs=258.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-----CCcccceeccccHHHHHHHcCchhHHHhcc-ccccc
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-----RVTGFAFTVWTNAWKALDAVGIGNSLRQQH-QQLRS 74 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~ 74 (409)
|| ++||+||||||+|+++|+.|+++|++|+|+||.+.+ ...+.++.+++.+++.|+++|+++.+.... .+...
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~ 79 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRD 79 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccce
Confidence 55 699999999999999999999999999999999864 234667788999999999999998886554 24444
Q ss_pred eeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEec
Q 015303 75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKT 151 (409)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a 151 (409)
..+++.... ..+.+...........+.+.|..+.+.|.+.+ .+++++++++|++++.+++.+.|++++|++++|
T Consensus 80 ~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a 156 (392)
T PRK09126 80 AKVLNGRSP---FALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTA 156 (392)
T ss_pred EEEEcCCCC---ceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEe
Confidence 554432221 12233221111122334678888888887765 478999999999999888888999999989999
Q ss_pred cEEEecCCCchHHHhhhCCCCCc-ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCc
Q 015303 152 KVLIGCDGVNSIVAKWLGFKNPA-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK 230 (409)
Q Consensus 152 d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (409)
|+||+|||.+|.+|+.++..... ..+...+...+..... .......+++.+.+++++|.+++.+++.+....+....
T Consensus 157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 234 (392)
T PRK09126 157 RLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELP--HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEA 234 (392)
T ss_pred CEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCC--CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHH
Confidence 99999999999999999765432 2333333333332221 12233456677777889999988776666543322111
Q ss_pred ccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhh
Q 015303 231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA 310 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~a 310 (409)
....+.+.+.+++.+.+......+ . .......++... ...++|..+|++|+|||||.++|++|||+|+|
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~----~--~~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a 303 (392)
T PRK09126 235 LLALDPEAFAAEVTARFKGRLGAM----R--LVSSRHAYPLVA-----VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLG 303 (392)
T ss_pred HHcCCHHHHHHHHHHHHhhhccCe----E--EcCCCcEeechH-----HHHHHHhhcceEEEehhhhcCCCcccchhhhh
Confidence 123344555555555443211110 0 011122233221 12346788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303 311 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 390 (409)
Q Consensus 311 l~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 390 (409)
|+||..|++.|..+++... ....+.+|+.|+++|++++..++..++.+..+++..++..+.+|+.+++.+
T Consensus 304 i~da~~la~~L~~~~~~~~----------~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 373 (392)
T PRK09126 304 LKGQDILARLILAAARRGQ----------DIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAVLRAA 373 (392)
T ss_pred HHHHHHHHHHHHHHHhcCC----------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 9999999999998875310 013478999999999999999999999999999999999999999998754
No 19
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=2.2e-44 Score=338.86 Aligned_cols=363 Identities=21% Similarity=0.242 Sum_probs=256.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-----ccceeccccHHHHHHHcCchhHHHhc-ccccccee
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-----GFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSIV 76 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~ 76 (409)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+... .+...+++.++++|+++|+++.+.+. ..+.....
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 4689999999999999999999999999999998765322 24467889999999999999998763 44555555
Q ss_pred eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEE
Q 015303 77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVL 154 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 154 (409)
+++...... ..++....+ .....+.++|..|.+.|.+.+ .+++++++++|++++.+++.+++++.+|+++++|+|
T Consensus 85 ~~~~~~~~~-~~~~~~~~~--~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 161 (392)
T PRK08773 85 VWDAGGGGE-LGFDADTLG--REQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA 161 (392)
T ss_pred EEeCCCCce-EEechhccC--CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 544322111 122221111 122345789999999988765 368999999999999988889999988889999999
Q ss_pred EecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccc
Q 015303 155 IGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE 233 (409)
Q Consensus 155 V~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 233 (409)
|+|||.+|.+|+.++...+.. +....+...+....++ ....+..|..+ ..+.++|.+++...++.............
T Consensus 162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~-g~~~~lP~~~~~~~~~w~~~~~~~~~~~~ 239 (392)
T PRK08773 162 IAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPH-QATAWQRFLPT-GPLALLPFADGRSSIVWTLPDAEAERVLA 239 (392)
T ss_pred EEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCC-CCEEEEEeCCC-CcEEEEECCCCceEEEEECCHHHHHHHHc
Confidence 999999999999998775532 2333333333332222 12234444444 46788999888765544443222111123
Q ss_pred cChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhH
Q 015303 234 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALED 313 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~ 313 (409)
.+.+.+.+++.+.+..+...+. .. .....++... ...++|..+|++|+|||||.++|+.|||+|+||+|
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~----~~--~~~~~~~l~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~D 308 (392)
T PRK08773 240 LDEAAFSRELTQAFAARLGEVR----VA--SPRTAFPLRR-----QLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRD 308 (392)
T ss_pred CCHHHHHHHHHHHHhhhhcCeE----ec--CCccEeechh-----hhhhhhcCCcEEEEechhhcCCCchhchhhhhHHH
Confidence 3445555555555442221110 00 1111223221 13457889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc-cCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHHhh
Q 015303 314 GIVLARCINEALKT-KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASFLV 392 (409)
Q Consensus 314 a~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~ 392 (409)
|..|+++|.+.+.. .++ ....+|+.|+++|+++...+...+..+.+++....+...++|++++..+..
T Consensus 309 a~~La~~L~~~~~~~~~~-----------~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~~~~ 377 (392)
T PRK08773 309 VAALQQLVRQAHARRADW-----------AAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGK 377 (392)
T ss_pred HHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 99999999987653 211 235799999999999988888888899999999999999999999875433
No 20
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=1.5e-43 Score=332.76 Aligned_cols=363 Identities=18% Similarity=0.185 Sum_probs=254.1
Q ss_pred CC-CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccc-ccceeee
Q 015303 1 ME-SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQ-LRSIVAT 78 (409)
Q Consensus 1 m~-~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~~~~~~ 78 (409)
|+ .++||+||||||+|+++|+.|+++|++|+|+|+.+.++..+++..+++.+.++|+++|+++.+.+.+.. ...+.++
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence 44 568999999999999999999999999999999998876666777999999999999999998776543 3333333
Q ss_pred ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe--EEEEecCCcEEeccE
Q 015303 79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKV 153 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~ 153 (409)
..++....+++..... ......+.|..|.+.|.+.+ ++++++++++|++++..+++ +.|++.+|+++++|+
T Consensus 81 --~~g~~~~~~~~~~~~~--~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~ 156 (388)
T PRK07045 81 --HDKELIASLDYRSASA--LGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTV 156 (388)
T ss_pred --cCCcEEEEecCCcccc--CCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCE
Confidence 2344333333322111 11134578999999998865 46899999999999887654 478888999999999
Q ss_pred EEecCCCchHHHhhh-CCCCCc-ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcc
Q 015303 154 LIGCDGVNSIVAKWL-GFKNPA-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKE 231 (409)
Q Consensus 154 vV~AdG~~S~vr~~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (409)
||+|||.+|.+|+.+ +.+... .+....+.+.+....... ......+..++.+.+++|.+++...|++.+..+.....
T Consensus 157 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 235 (388)
T PRK07045 157 LVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVR-ECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGY 235 (388)
T ss_pred EEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCcc-ccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhc
Confidence 999999999999974 544322 122223344444332221 11122233445567789998887777766654332211
Q ss_pred -cccChHHHHHHHHHHhCCCChHHHHHHHcCCCC-ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303 232 -LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLD-SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA 309 (409)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~ 309 (409)
.....+.+.+.+.+.+ .+...+.++..... .+...++. ....++|..+||+|+|||||.++|++|||+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 307 (388)
T PRK07045 236 LADTTRTKLLARLNEFV---GDESADAMAAIGAGTAFPLIPLG-----RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL 307 (388)
T ss_pred cCCCCHHHHHHHHhhhc---CccchHHHhccCcccccceeecC-----ccccccccCCCEEEEEccccccCCCccccHHH
Confidence 1122334444444332 22233333322111 11111221 12334778899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303 310 ALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388 (409)
Q Consensus 310 al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 388 (409)
||+||..||+.|..++.+. ....++|+.|+++|++++..++..++.+...++...+.+..+|.++..
T Consensus 308 ai~Da~~La~~L~~~~~~~------------~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
T PRK07045 308 AIEDAGELGACLDLHLSGQ------------IALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQT 374 (388)
T ss_pred HHHHHHHHHHHHHhhcCCc------------hhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhc
Confidence 9999999999998876542 256789999999999999999999999999999999999888888754
No 21
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=2.1e-44 Score=338.90 Aligned_cols=358 Identities=18% Similarity=0.185 Sum_probs=256.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
|..+||+||||||+|+++|+.|+++|++|+|||+.+.+.. .++..+++.+.++|+++|+++.+.+...++..+.+++..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT 83 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence 3458999999999999999999999999999999876543 466778888999999999999998877777777776543
Q ss_pred CCCccc--ccccccccccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303 82 SGKPSS--ERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG 156 (409)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 156 (409)
+.... ...+...........+.+.+..+.+.|.+.+. ++. +++++|++++.+++.+.|++.++++++||+||+
T Consensus 84 -g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07494 84 -GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVG 161 (388)
T ss_pred -CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEE
Confidence 22211 11221111111223457899999999988663 344 889999999998889999999998999999999
Q ss_pred cCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccC
Q 015303 157 CDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 235 (409)
Q Consensus 157 AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (409)
|||.+|.+|+.++...... +++.++...+....++. ......+. +.+.+.++|++++...++.....+........+
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~ 239 (388)
T PRK07494 162 ADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQ-NVSTEFHT-EGGPFTQVPLPGRRSSLVWVVRPAEAERLLALS 239 (388)
T ss_pred ecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCC-CEEEEEeC-CCCcEEEEECCCCcEEEEEECCHHHHHHHHcCC
Confidence 9999999999998775432 45555555554332221 22233333 444678899987765444332222111112334
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHcCCC-CceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHH
Q 015303 236 SAELKQFVLGKLHDLPAQVKAVIEKTPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDG 314 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a 314 (409)
.+.+.+.+.+.+. .++..... .....+++... ..++|..+||+|+|||||.++|++|||+|+|++||
T Consensus 240 ~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da 307 (388)
T PRK07494 240 DAALSAAIEERMQ-------SMLGKLTLEPGRQAWPLSGQ-----VAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDV 307 (388)
T ss_pred HHHHHHHHHHHHh-------hhcCCeEEccCCcEeechHH-----HHHhhccCceEEEEhhhhcCCchhhcccchhHHHH
Confidence 4555555544332 22221110 11222333222 23467889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303 315 IVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389 (409)
Q Consensus 315 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 389 (409)
..|++.|.....+ .....+|+.|+++|++++..++..+..+.+.+....+....+|+.++..
T Consensus 308 ~~La~~L~~~~~~-------------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~ 369 (388)
T PRK07494 308 ATLVEIVEDRPED-------------PGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHL 369 (388)
T ss_pred HHHHHHHHhcCCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 9999999874322 1457899999999999999999999999999999999999999999874
No 22
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=6.8e-44 Score=334.00 Aligned_cols=354 Identities=18% Similarity=0.185 Sum_probs=243.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC--C----cccceeccccHHHHHHHcCchhHHHhc-ccccccee
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR--V----TGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSIV 76 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~--~----~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~ 76 (409)
.+||+||||||+|+++|+.|++.|++|+|+|+.+... . ..+...++++++++|+++|+++.+... ..+...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 4899999999999999999999999999999875321 1 124468999999999999999988653 34444444
Q ss_pred eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccE
Q 015303 77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKV 153 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 153 (409)
.++.... ...+...........+.+.+..|...|.+++ ++++++++++|++++.+++.+++++.+|.+++||+
T Consensus 83 ~~~~~~~----~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 83 TWEHPEC----RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred EEeCCCc----eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence 4332111 1112111100111235667777888887654 46899999999999998889999999999999999
Q ss_pred EEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303 154 LIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232 (409)
Q Consensus 154 vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
||+|||.+|.+|+.++...... +.+.++...+.....+ ....+..|...+. ..++|+.++...+++...+.......
T Consensus 159 vIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~g~-~~~~pl~~~~~~~~~~~~~~~~~~~~ 236 (384)
T PRK08849 159 VIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQ-QDITWQQFTPSGP-RSFLPLCGNQGSLVWYDSPKRIKQLS 236 (384)
T ss_pred EEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCC-CCEEEEEeCCCCC-EEEeEcCCCceEEEEECCHHHHHHHH
Confidence 9999999999999998764433 2333333333332222 2334445554443 45678876643322221111110112
Q ss_pred ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
..+++.+.+.+.+.+. +.+.++ .......++.. ....++|..+|++|+|||||.++|+.|||+|+||+
T Consensus 237 ~~~~~~~~~~l~~~~~---~~~~~~----~~~~~~~~~l~-----~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~ 304 (384)
T PRK08849 237 AMNPEQLRSEILRHFP---AELGEI----KVLQHGSFPLT-----RRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFK 304 (384)
T ss_pred cCCHHHHHHHHHHHhh---hhhCcE----EeccceEeecc-----ccccchhccCCEEEEEcccccCCCCccchHhHHHH
Confidence 2355666666666543 221111 11111122221 12345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 390 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 390 (409)
||..|+++|... + ...+++|+.|++.|++++..++..++.+.++++..++....+|+.++...
T Consensus 305 Da~~L~~~l~~~--~-------------~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~ 367 (384)
T PRK08849 305 DVDVLLAETEKQ--G-------------VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLKFVRNAALKLA 367 (384)
T ss_pred HHHHHHHHHHhc--C-------------CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 999999998642 1 14578999999999999999999999999999988888999999998753
No 23
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-43 Score=333.95 Aligned_cols=360 Identities=18% Similarity=0.179 Sum_probs=251.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcc-ccccceeeeecC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQH-QQLRSIVATPTI 81 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~~ 81 (409)
+++||+||||||+|+++|+.|+++|++|+|+|+++.+....++..+++.+.++|+++|+++.+.+.. .+...+.+++
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~-- 82 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI-- 82 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE--
Confidence 5699999999999999999999999999999998765555678899999999999999999887633 3455555543
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeE---EEEecCCc-EEeccEE
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK---LLHLADGT-ILKTKVL 154 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v---~v~~~~g~-~~~ad~v 154 (409)
.+......++...... ....+.+.+..+.+.|.+.+ ++++++++++|+++..+++.+ .+...+++ +++||+|
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~v 161 (407)
T PRK06185 83 GGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLV 161 (407)
T ss_pred CCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEE
Confidence 2222223333332221 22345688889998887754 478999999999998877764 34445664 7999999
Q ss_pred EecCCCchHHHhhhCCCCCccc-ceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccc
Q 015303 155 IGCDGVNSIVAKWLGFKNPAFV-GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE 233 (409)
Q Consensus 155 V~AdG~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 233 (409)
|+|||.+|.+|+.++...+... ....+. +..+..+........++.++..++++|.+ +.+.+..............
T Consensus 162 I~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~ 238 (407)
T PRK06185 162 VGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALRA 238 (407)
T ss_pred EECCCCchHHHHHcCCCccccCCCceeEE--EecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhhh
Confidence 9999999999999987755432 222222 22222221111223345566678899987 5443333332222211122
Q ss_pred cChHHHHHHHHHHhCCCChHHHHHHHcCC-CCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 234 DHSAELKQFVLGKLHDLPAQVKAVIEKTP-LDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
.+. +.+.+.+..+.+.+.+.+.... ......++.... ..++|..+|++|+|||||.++|++|||+|+||+
T Consensus 239 ~~~----~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~ 309 (407)
T PRK06185 239 AGL----EAFRERVAELAPELADRVAELKSWDDVKLLDVRVD-----RLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQ 309 (407)
T ss_pred hhH----HHHHHHHHHhCccHHHHHhhcCCccccEEEEEecc-----ccccccCCCeEEEeccccccCcccccchhHHHH
Confidence 233 3344444333333333343221 122223333221 234678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCc--hhHHHHHHHHHHH
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDG--KILNFLRDKILAS 389 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~--~~~~~~r~~~~~~ 389 (409)
||..|++.|.+.+++.| .....|+.|+++|++++..++..++.+.+++..+. +...++|+++|..
T Consensus 310 Da~~La~~l~~~~~~~~------------~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~ 376 (407)
T PRK06185 310 DAVAAANILAEPLRRGR------------VSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRL 376 (407)
T ss_pred HHHHHHHHHHHHhccCC------------ccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHH
Confidence 99999999999876532 23489999999999999999999999999999888 8899999999874
No 24
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-43 Score=337.90 Aligned_cols=350 Identities=18% Similarity=0.149 Sum_probs=250.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
++||+||||||+|+++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+++.+.+.+.+.....+.... +
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~-~ 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD-T 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc-c
Confidence 489999999999999999999999999999999988888899999999999999999999998877666655543221 1
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEec--CC-cEEeccEEEecC
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLA--DG-TILKTKVLIGCD 158 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~--~g-~~~~ad~vV~Ad 158 (409)
.+++...... ......+.+..+.+.|.+.+ .++++++++++++++++++++++++. +| .++++|+||+||
T Consensus 81 ----~~~~~~~~~~-~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgAD 155 (493)
T PRK08244 81 ----RLDFSALDTS-SNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGAD 155 (493)
T ss_pred ----cCCcccCCCC-CCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECC
Confidence 1222211111 12235688999999888765 36899999999999988888877765 45 479999999999
Q ss_pred CCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCc-CcccccCh
Q 015303 159 GVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQ-DKELEDHS 236 (409)
Q Consensus 159 G~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~ 236 (409)
|.+|.+|+.+++..+.. .....+.+.+...... ......++.++.+++++|++++.+.+++....... ......+.
T Consensus 156 G~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
T PRK08244 156 GAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPP--PSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTL 233 (493)
T ss_pred CCChHHHHhcCCCccCCCcceEEEEEEEEecCCC--CcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCH
Confidence 99999999998765433 2333344444333222 22233445666688999999887666543322111 11123455
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303 237 AELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV 316 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~ 316 (409)
+++.+.+.+.+.. . +..........++. ....+++|..+||+|+|||||.++|++|||||+||+||.+
T Consensus 234 ~~~~~~l~~~~~~---~----~~~~~~~~~~~~~~-----~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~ 301 (493)
T PRK08244 234 EELKTSLIRICGT---D----FGLNDPVWMSRFGN-----ATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN 301 (493)
T ss_pred HHHHHHHHHhhCC---C----CCcCCeeEEEeccc-----ceeeHhhhccCcEEEeecceeccCCccccccccchhhHHH
Confidence 5555555544321 0 00000011111111 1223457888999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHH
Q 015303 317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKIL 387 (409)
Q Consensus 317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~ 387 (409)
|+++|...+++. ..+..|+.|+++|++++..++..+..+..++... +....+|+.+.
T Consensus 302 La~~La~~l~g~-------------~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~ 358 (493)
T PRK08244 302 LGWKLAAAIKGW-------------APDWLLDSYHAERHPVGTALLRNTEVQTKLFDFT-RPGLALRSMLS 358 (493)
T ss_pred HHHHHHHHHcCC-------------CCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCC-chhHHHHHHHH
Confidence 999999988653 4467899999999999999999998888887654 55667777643
No 25
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=2.2e-43 Score=331.54 Aligned_cols=356 Identities=19% Similarity=0.202 Sum_probs=253.2
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCcCCc----ccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVT----GFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
||+||||||+|+++|+.|+++| ++|+|+||.+.++.. ++++.+++.+++.|+++|+++.+.+.+.+.....+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999999877543 46789999999999999999998777666665555432
Q ss_pred CCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEec
Q 015303 81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGC 157 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~A 157 (409)
.... ...+...........+.++|..|.+.|.+.+ ++++++++++|++++.+++.+++++.+|.+++||+||+|
T Consensus 81 ~~~~---~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 81 GHFG---ATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred CCCc---eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 1111 1111111111122345789999999999876 368999999999999888889999998889999999999
Q ss_pred CCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCC-eEEEEEEecCCCcCcccccC
Q 015303 158 DGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQ-TIYWFFTWTSSSQDKELEDH 235 (409)
Q Consensus 158 dG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (409)
||.+|.+|+.++.+.+.. ++..++...+....+.. ...+. ++..+..+.++|.+++ .+.+++....+........+
T Consensus 158 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
T TIGR01984 158 DGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQ-GCAFE-RFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLP 235 (382)
T ss_pred cCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCC-CEEEE-eeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCC
Confidence 999999999998664433 34455555444332221 12222 3444446788999887 54444333221111112234
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHH
Q 015303 236 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGI 315 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~ 315 (409)
.+++.+.+.+.+. +.+..+.. ......++... ...++|..+||+|+|||||.++|++|||+|+||+||.
T Consensus 236 ~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~ 304 (382)
T TIGR01984 236 DAEFLAELQQAFG---WRLGKITQ---VGERKTYPLKL-----RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVE 304 (382)
T ss_pred HHHHHHHHHHHHh---hhccCeEE---cCCccEeecch-----hhhhheecCCEEEEeecccccCCccccchhhhHHHHH
Confidence 4455555555432 22111111 11222233222 1233678899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303 316 VLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 390 (409)
Q Consensus 316 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 390 (409)
.|+++|....... ..+++|+.|+++|++++..++..+..+..++..+++....+|+.+++.+
T Consensus 305 ~La~~L~~~~~~~-------------~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 366 (382)
T TIGR01984 305 TLAEVLIDARIDL-------------GTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIPLLRALRNLGLLAL 366 (382)
T ss_pred HHHHHHHHhccCc-------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 9999998765221 3478899999999999999999999999999999988999999988754
No 26
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=5.4e-43 Score=329.62 Aligned_cols=359 Identities=21% Similarity=0.267 Sum_probs=258.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-----ccceeccccHHHHHHHcCchhHHHh-ccccccceeeee
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-----GFAFTVWTNAWKALDAVGIGNSLRQ-QHQQLRSIVATP 79 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~ 79 (409)
||+||||||+|+++|+.|+++|++|+|+||++.++.. ++++.+++++.+.|+++|+++++.+ .+.+.....++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999886543 4778999999999999999999887 676777766654
Q ss_pred cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC---CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303 80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG 156 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 156 (409)
... .. .+.+...........+.++|..|.+.|.+.+. +++++++++|++++.+++.+.+++.+|+++++|+||+
T Consensus 81 ~~~-~~--~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 81 GGS-FG--ALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred CCC-Cc--eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 322 11 12222111111233467999999999998763 3799999999999988888999999998999999999
Q ss_pred cCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccC
Q 015303 157 CDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDH 235 (409)
Q Consensus 157 AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (409)
|||.+|.+|+.++.+.... .....+...+...... ......++.++..++++|.+++...+.+.............+
T Consensus 158 adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (385)
T TIGR01988 158 ADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPH--QGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS 235 (385)
T ss_pred eCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence 9999999999997654432 2334444444333222 111222333445678899999876555544322111112345
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHH
Q 015303 236 SAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGI 315 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~ 315 (409)
++++.+++.+.+..+...+ .. ......++.... ..+.|..+||+|+|||||.++|++|||+|+||+||.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~-----~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~ 304 (385)
T TIGR01988 236 DEEFLAELQRAFGSRLGAI----TL--VGERHAFPLSLT-----HAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVA 304 (385)
T ss_pred HHHHHHHHHHHHhhhcCce----Ee--ccCcceeechhh-----hhhheecCceEEEecccccCCccccchhhhhHHHHH
Confidence 5666666666543221110 00 112222333221 223678899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303 316 VLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 390 (409)
Q Consensus 316 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 390 (409)
.|++.|.+++...+ ......+|+.|++.|++++..++..++.+..++...++....+|++.++.+
T Consensus 305 ~La~~L~~~~~~~~----------~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 369 (385)
T TIGR01988 305 ALAEVLEDARRRGE----------DIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFPPLRLLRNLGLRLL 369 (385)
T ss_pred HHHHHHHHHHhcCC----------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 99999998765310 002478999999999999999999999999999999999999999888743
No 27
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=326.87 Aligned_cols=337 Identities=23% Similarity=0.299 Sum_probs=243.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+||||||+|+++|+.|+++|++|+|+|+.+.++..+.++.++|++++.|+++|+++.+...+.+.....+++. .+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~-~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNR-HGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcC-CCC
Confidence 3899999999999999999999999999999988888889999999999999999999998887777777766643 233
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCC---C-ceEEeCCeEEEEEEeCCeEEEEecCC-----cEEeccEEE
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP---S-GTIRYSSQVVSIEESGHFKLLHLADG-----TILKTKVLI 155 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~-~~i~~~~~v~~i~~~~~~v~v~~~~g-----~~~~ad~vV 155 (409)
.+....... ........+.++|..|.+.|++.+. + .+++++++|++++++++++.+.+.++ .+++||+||
T Consensus 80 ~~~~~~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 80 RIWSEPRGL-AAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred EEeeccCCc-ccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEE
Confidence 222211111 0111223456899999999987652 3 46999999999998877766666543 389999999
Q ss_pred ecCCCchHHHhhhCCC--CCcccceeeEEEeecCCCCCCCCCceeeeec-CCcEEEEEecCCC-------eEEEEEEecC
Q 015303 156 GCDGVNSIVAKWLGFK--NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFG-KGLRSGFIPCDDQ-------TIYWFFTWTS 225 (409)
Q Consensus 156 ~AdG~~S~vr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~ 225 (409)
+|||.+|.+|+.+... .+.+.+...|.+....+... ......+.+ .+..+.++|..++ .+.|++....
T Consensus 159 gADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~ 236 (413)
T PRK07538 159 GADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFL--TGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRV 236 (413)
T ss_pred ECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcccc--CCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcC
Confidence 9999999999998544 34456666777665543221 112223332 3456788898753 5677776654
Q ss_pred CCc--CcccccChHHHHHHHHHHhCCCChH---HHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCC
Q 015303 226 SSQ--DKELEDHSAELKQFVLGKLHDLPAQ---VKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMT 300 (409)
Q Consensus 226 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~ 300 (409)
+.. ......+.....+++++.+..|... +.+++... ..+..+++....|. ++|..+|++|||||||.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~p~~~~~~~----~~w~~grv~LvGDAAH~~~ 310 (413)
T PRK07538 237 DDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAA--EAIYEYPMVDRDPL----PRWTRGRVTLLGDAAHPMY 310 (413)
T ss_pred CccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcC--cceeeccccccCCC----CcccCCcEEEEeeccCcCC
Confidence 321 1111122223355666666655442 45555533 23334455443333 3788999999999999999
Q ss_pred CCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 015303 301 PDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYL 367 (409)
Q Consensus 301 P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~ 367 (409)
|++|||+|+||+||..|+++|.+. . ...++|+.|+++|++++..++..++.
T Consensus 311 P~~GqG~~~Ai~Da~~La~~L~~~---~-------------~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 311 PVGSNGASQAILDARALADALAAH---G-------------DPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhc---C-------------CHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 999999999999999999999872 1 46899999999999999999998877
No 28
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=4.2e-42 Score=331.15 Aligned_cols=372 Identities=25% Similarity=0.345 Sum_probs=264.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcc---cceeccccHHHHHHHcCc--hhHHHhcccccc-ce
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTG---FAFTVWTNAWKALDAVGI--GNSLRQQHQQLR-SI 75 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~---~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~~-~~ 75 (409)
++++|+||||||+|+++|+.|+++|++|+||||++.. +..+ .++.+++++++.|+++|+ .+++.+.+.... .+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 4589999999999999999999999999999998632 2222 468899999999999985 455555543221 11
Q ss_pred -eeeecCCCCcccccccccc-cccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccE
Q 015303 76 -VATPTISGKPSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKV 153 (409)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 153 (409)
.+.+...+.....++.... ........+.+.|..|.+.|.+.++...++++++|++++..++.+++++.+|.++++|+
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDl 239 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDL 239 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCE
Confidence 1122222222112211110 11111224579999999999988755567889999999999999999999998899999
Q ss_pred EEecCCCchHHHhhh-CCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303 154 LIGCDGVNSIVAKWL-GFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232 (409)
Q Consensus 154 vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
||+|||.+|.+|+.+ +...+.+.+..+|++.+..............+.+.+.++...|.+++..+|+..+..+.. .
T Consensus 240 VVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~---~ 316 (668)
T PLN02927 240 LVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAG---G 316 (668)
T ss_pred EEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCcc---c
Confidence 999999999999987 555566778888888776533221122344556777777777887777766654433221 1
Q ss_pred ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
....+..++++++.+..|.+.+.++++..+...+..++++...+.. +|..+||+|+|||||.++|+.|||.|+||+
T Consensus 317 ~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~----~W~~grVvLiGDAAH~~~P~~GqG~n~Aie 392 (668)
T PLN02927 317 ADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGF----TWGKGRVTLLGDSIHAMQPNMGQGGCMAIE 392 (668)
T ss_pred cccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCC----ccccCcEEEEcCccCCCCCccccchHHHHH
Confidence 1234556788889999999999998887655555556666554432 688899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCc-------hhHHHHHHH
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDG-------KILNFLRDK 385 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~-------~~~~~~r~~ 385 (409)
||..|+..|.++.++.. .......+..+|+.|+++|++++..++..++....++.... ..+.+++.+
T Consensus 393 Da~~La~~L~~~~~~~~------~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~ 466 (668)
T PLN02927 393 DSFQLALELDEAWKQSV------ETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKF 466 (668)
T ss_pred HHHHHHHHHHHhhcccc------ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc
Confidence 99999999988754310 00112357899999999999999999988665544443222 234555655
Q ss_pred HH
Q 015303 386 IL 387 (409)
Q Consensus 386 ~~ 387 (409)
.+
T Consensus 467 ~~ 468 (668)
T PLN02927 467 RV 468 (668)
T ss_pred CC
Confidence 54
No 29
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=4.3e-42 Score=329.98 Aligned_cols=376 Identities=18% Similarity=0.148 Sum_probs=259.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
.++||+||||||+|+++|+.|+++|++|+|+||.... .....|..++|++.+.|+++|+++.+.+...+..++.+++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~- 110 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDH- 110 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEEC-
Confidence 3579999999999999999999999999999998622 22346778999999999999999999887777777777653
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhC-----CCceEEeCCeEEEEEEeCC-------eEEEEecC----
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL-----PSGTIRYSSQVVSIEESGH-------FKLLHLAD---- 145 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-----~~~~i~~~~~v~~i~~~~~-------~v~v~~~~---- 145 (409)
.+... .+++.. ......+++..|.+.|.+.+ ++++++. .+++++..+++ +++++..+
T Consensus 111 ~G~~~-~i~~~~-----~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~ 183 (567)
T PTZ00367 111 KGKQV-KLPYGA-----GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDV 183 (567)
T ss_pred CCCEE-EecCCC-----CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccc
Confidence 23321 222221 12234567888888887754 5678865 47887754432 35555544
Q ss_pred -------------------CcEEeccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcE
Q 015303 146 -------------------GTILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLR 206 (409)
Q Consensus 146 -------------------g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (409)
+++++||+||+|||.+|.+|+.++...+.+.....+.+........+.......+++++..
T Consensus 184 ~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gp 263 (567)
T PTZ00367 184 PENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGP 263 (567)
T ss_pred cccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCce
Confidence 5579999999999999999999976555444444544433221122223334566788889
Q ss_pred EEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhC-CCChHHHHHHHc-CC-CCceEeecccccCcccccccc
Q 015303 207 SGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLH-DLPAQVKAVIEK-TP-LDSIISSRLQYRQPQEVLWGN 283 (409)
Q Consensus 207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 283 (409)
++++|++++..++.+.+..+..+ +.++..+.+.+.+. .+++.+.+.+.. .. ...+..++....++. .
T Consensus 264 i~~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~-----~ 333 (567)
T PTZ00367 264 ILSYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPA-----F 333 (567)
T ss_pred EEEEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCc-----c
Confidence 99999999987766655433221 11233444444433 345555554422 11 123444444443322 4
Q ss_pred cCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhh--ccCCCCCCchhhhhhhHHHHHH----HHHHhhhhh
Q 015303 284 ISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK--TKQGVGEEDEEEFNKRVEMGLK----RYAKERRWR 357 (409)
Q Consensus 284 ~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~----~Y~~~r~~~ 357 (409)
+..+|++|||||||+++|++|||||+||+||..|++.|....+ +.|+ .+...+.++|+ .|++.|+++
T Consensus 334 ~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~-------~d~~~v~~aL~~~~~~Y~~~Rk~~ 406 (567)
T PTZ00367 334 PSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQ-------NEMAEIEDAIQAAILSYARNRKTH 406 (567)
T ss_pred CCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCc-------hhHHHHHHHHHHhHHHHHHHhhhh
Confidence 5678999999999999999999999999999999999976432 1111 11224466666 999999999
Q ss_pred HHHHHHHHHHhheeeccCchhHHHHHHHHHHHHhhh--hhcccccCCCCcccC
Q 015303 358 CFELISIAYLVGSIQQSDGKILNFLRDKILASFLVG--LLLKKADFDCGNLTS 408 (409)
Q Consensus 358 ~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~g~~~~ 408 (409)
+..+...+..++++++. ..+|+..+++|-.. .......++.|-.|+
T Consensus 407 a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~ 454 (567)
T PTZ00367 407 ASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGPMSLLSGLDPS 454 (567)
T ss_pred HHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCccccccHHHHcCCCCC
Confidence 99999999999999988 57999999987555 445556666666553
No 30
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=8.5e-42 Score=326.87 Aligned_cols=381 Identities=17% Similarity=0.154 Sum_probs=260.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhc-cccccceeeeecCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSIVATPTIS 82 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~~~~~~~ 82 (409)
.+||+||||||+|+++|+.|++.|++|+|+||.......+.+..++|.+.+.|+++|+++.+... ..+..++.++. .
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~--~ 120 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK--D 120 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE--C
Confidence 58999999999999999999999999999999876556667899999999999999999988764 33555555543 2
Q ss_pred CCccccccccccc--ccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe---EEEEecCCc--EEecc
Q 015303 83 GKPSSERSLKVQG--KYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF---KLLHLADGT--ILKTK 152 (409)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad 152 (409)
++. ...+++... .......+.++|.+|.+.|++++ +++++..+ +++++..+++. +++...+|+ +++||
T Consensus 121 g~~-~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~Ad 198 (514)
T PLN02985 121 GKE-AVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAP 198 (514)
T ss_pred CEE-EEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECC
Confidence 322 122332111 11122345789999999998865 46788766 56666555543 344445665 46799
Q ss_pred EEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303 153 VLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232 (409)
Q Consensus 153 ~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
+||+|||.+|.+|+.++...+.. .....++.........+.....+++.+..+.++|+++++..+.+....+..+
T Consensus 199 LVVgADG~~S~vR~~l~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~--- 273 (514)
T PLN02985 199 LTVVCDGCYSNLRRSLNDNNAEV--LSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIP--- 273 (514)
T ss_pred EEEECCCCchHHHHHhccCCCcc--eeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCC---
Confidence 99999999999999997654321 1122222221111122333455667777889999998887666555443222
Q ss_pred ccChHHHHHHHHHHhC-CCChHHHHHHHc-CCC-CceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303 233 EDHSAELKQFVLGKLH-DLPAQVKAVIEK-TPL-DSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA 309 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~ 309 (409)
..+..++.+.+.+... ..++.+.+.+.. ... ..+...+.... ....+..+|++|||||||+++|++|||||+
T Consensus 274 ~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l-----~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~ 348 (514)
T PLN02985 274 SIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRM-----SATLSDKKGVIVLGDAFNMRHPAIASGMMV 348 (514)
T ss_pred CcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccc-----cccccCCCCEEEEecccccCCCCccccHhH
Confidence 2223444555544332 455566665432 111 12333333222 122455789999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec-cCchhHHHHHHHHHH
Q 015303 310 ALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ-SDGKILNFLRDKILA 388 (409)
Q Consensus 310 al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~-~~~~~~~~~r~~~~~ 388 (409)
|++||..|++.|.+.-.- .+.+...++|+.|+++|++++..+...|..++.+|. ..++....+|+..|.
T Consensus 349 AleDA~vLa~lL~~~~~~----------~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~ 418 (514)
T PLN02985 349 LLSDILILRRLLQPLSNL----------GNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYD 418 (514)
T ss_pred HHHHHHHHHHHhhhcccc----------cchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999874210 013366899999999999999999999999999996 567778999999999
Q ss_pred HHhhh--hhcccccCCCCcccC
Q 015303 389 SFLVG--LLLKKADFDCGNLTS 408 (409)
Q Consensus 389 ~~~~~--~~~~~~~~~~g~~~~ 408 (409)
+|... .......++.|-.|+
T Consensus 419 y~~~g~~~~~~~~~ll~~~~~~ 440 (514)
T PLN02985 419 YLCSGGFRTSGMMALLGGMNPR 440 (514)
T ss_pred HHHcCCccccccHHHHcCCCCC
Confidence 86555 444556666665553
No 31
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=2.1e-42 Score=325.61 Aligned_cols=359 Identities=21% Similarity=0.199 Sum_probs=248.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC------cccceeccccHHHHHHHcCchhHHHhc-cccccce
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV------TGFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSI 75 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~ 75 (409)
+.+||+||||||+|+++|+.|++.|++|+|+|+.+.+.. ..+...+++.+.++|+.+|+++.+... ..+....
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 458999999999999999999999999999999864321 225578899999999999999888653 3334444
Q ss_pred eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303 76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTK 152 (409)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 152 (409)
..+.+..+.. .+...........+.+.|..|.+.|.+.+ ++++++++++|+++..+++.+.|++.++++++||
T Consensus 84 ~~~~~~~~~~----~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~ 159 (391)
T PRK08020 84 ETWEWETAHV----VFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK 159 (391)
T ss_pred EEEeCCCCeE----EecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence 4433322211 11111111122345789999999998765 4789999999999998888899999898889999
Q ss_pred EEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcc
Q 015303 153 VLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKE 231 (409)
Q Consensus 153 ~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (409)
+||+|||.+|.+|+.++...... +.+.++...+..+..+ ....+..+...+ ...++|..++...++....+......
T Consensus 160 ~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~~p~~~~~~~~v~~~~~~~~~~~ 237 (391)
T PRK08020 160 LVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPP-GDSTWQQFTPSG-PRAFLPLFDNWASLVWYDSPARIRQL 237 (391)
T ss_pred EEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCC-CCEEEEEEcCCC-CEEEeECCCCcEEEEEECCHHHHHHH
Confidence 99999999999999997664332 3344444444443322 123344455544 35678988765433222111111111
Q ss_pred cccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhh
Q 015303 232 LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAAL 311 (409)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al 311 (409)
...+.+++.+.+.+.+ +..+..+.. .....++... ...++|..+|++|+|||||.++|+.|||+|+||
T Consensus 238 ~~~~~~~~~~~l~~~~---~~~~~~~~~----~~~~~~pl~~-----~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al 305 (391)
T PRK08020 238 QAMSMAQLQQEIAAHF---PARLGAVTP----VAAGAFPLTR-----RHALQYVQPGLALVGDAAHTINPLAGQGVNLGY 305 (391)
T ss_pred HCCCHHHHHHHHHHHh---hhhccceEe----ccccEeecce-----eehhhhccCcEEEEechhhccCCcccchhHHHH
Confidence 2223344444444432 222111100 0112223221 234478899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhc-cCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303 312 EDGIVLARCINEALKT-KQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 390 (409)
Q Consensus 312 ~~a~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 390 (409)
+||..|+++|.+.... .++ ....+|+.|++.|+++...++..++.+.+++..+.+..+.+|+.++..+
T Consensus 306 ~Da~~La~~L~~~~~~~~~~-----------~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~ 374 (391)
T PRK08020 306 RDVDALLDVLVNARSYGEAW-----------ASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPPLRFARNLGLMAA 374 (391)
T ss_pred HHHHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 9999999999887542 111 3468999999999999999999999999999999999999999999843
No 32
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=321.57 Aligned_cols=338 Identities=20% Similarity=0.244 Sum_probs=243.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+.++|+||||||+|+++|+.|++.|++|+|+||.+.+ ...+.++.+++++++.|+++|+.+.. ..+.+.....+++ .
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~-~ 82 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLD-R 82 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEe-C
Confidence 4579999999999999999999999999999998754 34567888999999999999997654 4444444444443 2
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.++.+..... ....+.+..+.+.|.+.+++++++++++|++++.+++.+++++.+|++++||+||+|||.+
T Consensus 83 ~g~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 83 DGRVVQRRPM---------PQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred CCCEeeccCC---------CccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 3332221111 1123567889999998888889999999999999888999999999999999999999999
Q ss_pred hHHHhhh-CCCCCcccceeeEEEeecCCC---CC--CCCCceeeeecCCcEEEEEecCCC---------eEEEEEEecCC
Q 015303 162 SIVAKWL-GFKNPAFVGRSAIRGYSDFKG---SH--GFEPNFLQFFGKGLRSGFIPCDDQ---------TIYWFFTWTSS 226 (409)
Q Consensus 162 S~vr~~l-~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~p~~~~---------~~~~~~~~~~~ 226 (409)
|.+|+.+ +...+.+.+..++.+.+.... .. .....+..+.+++..+.++|+++. .++|+.....+
T Consensus 154 S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (386)
T PRK07236 154 STVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAP 233 (386)
T ss_pred chHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCC
Confidence 9999997 333445666677766554211 11 112334455566767777887532 23344333222
Q ss_pred CcC---cc--------------cccChHHHHHHHHHHhCC-CChHHHHHHHcCCCCceEeecccccCcccccccccCCCc
Q 015303 227 SQD---KE--------------LEDHSAELKQFVLGKLHD-LPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS 288 (409)
Q Consensus 227 ~~~---~~--------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
... .. .....+...+.+.+.+.. +++.+..+++..... ..+++... ..++|..+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~gr 306 (386)
T PRK07236 234 AGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDL-----EVPRMAFGR 306 (386)
T ss_pred CccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhcc-----cCcccccCc
Confidence 100 00 001123455666666654 888888888765322 11222221 123678899
Q ss_pred EEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 015303 289 VCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLV 368 (409)
Q Consensus 289 v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~ 368 (409)
++|+|||||.++|+.|||+|+||+||..|+++|.... +....+|+.|++.|++++..++..++.+
T Consensus 307 v~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~---------------~~~~~al~~Ye~~R~~r~~~~~~~s~~~ 371 (386)
T PRK07236 307 VALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA---------------GDIDAALAAWEAERLAVGAAIVARGRRL 371 (386)
T ss_pred EEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997631 1367999999999999999999999988
Q ss_pred heeec
Q 015303 369 GSIQQ 373 (409)
Q Consensus 369 ~~~~~ 373 (409)
...++
T Consensus 372 ~~~~~ 376 (386)
T PRK07236 372 GARLQ 376 (386)
T ss_pred HHHHH
Confidence 88776
No 33
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=7.7e-42 Score=326.63 Aligned_cols=345 Identities=19% Similarity=0.166 Sum_probs=246.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
.++||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..+++.+++.|+++|+++.+.+.+.......+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~--- 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA--- 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee---
Confidence 35899999999999999999999999999999998765 34578889999999999999999998765433221110
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG 159 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 159 (409)
. ..+++...... ......+.+..+.+.|.+.+. +++++++++|++++++++++.+++.++.+++||+||+|||
T Consensus 79 -~---~~~~~~~~~~~-~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG 153 (488)
T PRK06834 79 -A---TRLDISDFPTR-HNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDG 153 (488)
T ss_pred -e---EecccccCCCC-CCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence 0 11111111111 122346778888888877653 6899999999999999999999988888899999999999
Q ss_pred CchHHHhhhCCCCCccc-ceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecC-CCeEEEEEEecCCCcCcccccChH
Q 015303 160 VNSIVAKWLGFKNPAFV-GRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCD-DQTIYWFFTWTSSSQDKELEDHSA 237 (409)
Q Consensus 160 ~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
.+|.+|+.+++..+... ....+...+.....+ .+.....+...+.+.|.. ++.+.+++..... ......+.+
T Consensus 154 ~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 227 (488)
T PRK06834 154 GRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP----EWGVHRDALGIHAFGRLEDEGPVRVMVTEKQV--GATGEPTLD 227 (488)
T ss_pred CCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC----CcceeeCCCceEEEeccCCCCeEEEEEecCCC--CCCCCCCHH
Confidence 99999999988776543 333344444433221 122233444456677776 5544333332221 111244556
Q ss_pred HHHHHHHHHhC-CCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303 238 ELKQFVLGKLH-DLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIV 316 (409)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~ 316 (409)
++.+.+.+.+. .+.. ........++. ....+++|..+||+|+|||||.++|+.|||||+||+||.+
T Consensus 228 ~~~~~l~~~~g~~~~~--------~~~~~~~~~~~-----~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~n 294 (488)
T PRK06834 228 DLREALIAVYGTDYGI--------HSPTWISRFTD-----MARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVN 294 (488)
T ss_pred HHHHHHHHhhCCCCcc--------ccceeEEeccc-----cceecccccCCcEEEEeeccccCCccccccccccHHHHHH
Confidence 66666666553 2211 00011111111 2234568889999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303 317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388 (409)
Q Consensus 317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 388 (409)
|+++|...+++. ..+.+|+.|+++|++.+..++..+..+..++. .++....+|+.++.
T Consensus 295 LawkLa~vl~g~-------------~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~-~~~~~~~lR~~~~~ 352 (488)
T PRK06834 295 LGWKLAQVVKGT-------------SPESLLDTYHAERHPVAARVLRNTMAQVALLR-PDDRTEALRDIVAE 352 (488)
T ss_pred HHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHH
Confidence 999999988864 45799999999999999999999988887776 67778999998875
No 34
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=4.4e-42 Score=336.81 Aligned_cols=351 Identities=18% Similarity=0.171 Sum_probs=241.2
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeee
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATP 79 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (409)
|.+++||+||||||+||++|+.|++. |++|+|||+.+.+...+++..++++++++|+++|+++++.+.+.......++.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 44578999999999999999999995 99999999998888888999999999999999999999988887777666654
Q ss_pred cCCC--Cccccc-cccccc-ccCCccceeccHHHHHHHHHhhCC----CceEEeCCeEEEEEEeC---CeEEEEec----
Q 015303 80 TISG--KPSSER-SLKVQG-KYGEHEMRCVRRKLLLETLAKELP----SGTIRYSSQVVSIEESG---HFKLLHLA---- 144 (409)
Q Consensus 80 ~~~~--~~~~~~-~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~----~~~i~~~~~v~~i~~~~---~~v~v~~~---- 144 (409)
.... ..+... .+.... ....+....+++..+.+.|++.+. ++++.+++++++++.++ ..|++++.
T Consensus 109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 3211 111000 000000 011223457889999999988663 25789999999998764 24777775
Q ss_pred --CC--cEEeccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecC--CCCCC-CCCceeeeecCCcEEEEEecCCCe-
Q 015303 145 --DG--TILKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDF--KGSHG-FEPNFLQFFGKGLRSGFIPCDDQT- 216 (409)
Q Consensus 145 --~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~- 216 (409)
+| ++++||+||+|||++|.||+.+++..........| +..+. ....+ ......+....++.+.++|..++.
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~-~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~ 267 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAW-GVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL 267 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceE-EEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence 34 47999999999999999999998876544322222 22111 11111 111122233455678899998875
Q ss_pred EEEEEEecC---CCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCccccccccc---------
Q 015303 217 IYWFFTWTS---SSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNI--------- 284 (409)
Q Consensus 217 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 284 (409)
+.+++.... .........+.+++.+.+.+.+..+...+ ..+.++..+.. .+..++++
T Consensus 268 ~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~---------~~v~w~s~y~i--~~r~a~~f~~~~~~~~~ 336 (634)
T PRK08294 268 VRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV---------KEVAWWSVYEV--GQRLTDRFDDVPAEEAG 336 (634)
T ss_pred EEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce---------eEEeEEecccc--cceehhhcccccccccc
Confidence 333332211 11111134566666666665443222221 12222222111 11122222
Q ss_pred -CCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHH
Q 015303 285 -SRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELIS 363 (409)
Q Consensus 285 -~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~ 363 (409)
..+||+|+|||||.++|.+|||||+||+||.+|++.|...+++. ..+..|+.|+++|+++++.+++
T Consensus 337 ~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~-------------a~~~lL~tYe~ERrp~a~~li~ 403 (634)
T PRK08294 337 TRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR-------------SPPELLHTYSAERQAIAQELID 403 (634)
T ss_pred cccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999988764 4578999999999999999999
Q ss_pred HHHHhheeeccCc
Q 015303 364 IAYLVGSIQQSDG 376 (409)
Q Consensus 364 ~s~~~~~~~~~~~ 376 (409)
.+..+..++....
T Consensus 404 ~~~~~~~l~~~~~ 416 (634)
T PRK08294 404 FDREWSTMMAAPP 416 (634)
T ss_pred HHHHHHHHhccCC
Confidence 9999999887543
No 35
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-42 Score=333.52 Aligned_cols=340 Identities=18% Similarity=0.192 Sum_probs=238.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
+++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+.+++.+.+.+......+.. .
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~-~ 80 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRD-D 80 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeC-C
Confidence 458999999999999999999999999999999998888889999999999999999999999887776666555432 1
Q ss_pred CCcccccccccc----cccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEe---cCCcEEeccE
Q 015303 83 GKPSSERSLKVQ----GKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHL---ADGTILKTKV 153 (409)
Q Consensus 83 ~~~~~~~~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~---~~g~~~~ad~ 153 (409)
+. +....+... ..........+.+..+++.|.+.+. +++++++++|++++++++++++++ .++++++||+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~ 159 (502)
T PRK06184 81 GS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARY 159 (502)
T ss_pred ce-EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCE
Confidence 21 111111110 0011122356888889988887663 689999999999999888888877 5566899999
Q ss_pred EEecCCCchHHHhhhCCCCCcccc-e-eeEEEeecCCCCCCCCCceeeeecCC-cEEEEEecCCCeEEEEEEecCCCcCc
Q 015303 154 LIGCDGVNSIVAKWLGFKNPAFVG-R-SAIRGYSDFKGSHGFEPNFLQFFGKG-LRSGFIPCDDQTIYWFFTWTSSSQDK 230 (409)
Q Consensus 154 vV~AdG~~S~vr~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (409)
||+|||.+|.+|+.+++....... . ..+......... ....+..+..+. ..+.++|+.++.. |.+.+..+.. .
T Consensus 160 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~-~ 235 (502)
T PRK06184 160 LVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL--DRDAWHQWPDGDMGMIALCPLPGTDL-FQIQAPLPPG-G 235 (502)
T ss_pred EEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC--CCcceEEccCCCCcEEEEEEccCCCe-EEEEEEcCCC-c
Confidence 999999999999999877654422 1 222322322221 122344444443 6778889876643 3332222221 1
Q ss_pred ccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhh
Q 015303 231 ELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAA 310 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~a 310 (409)
....+.+.+.+.+.+.+...... ...+.+.. .+. .....+++|..+||+|+|||||.++|+.|||||+|
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~-~~~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~g 304 (502)
T PRK06184 236 EPDLSADGLTALLAERTGRTDIR---------LHSVTWAS-AFR-MNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTS 304 (502)
T ss_pred cCCCCHHHHHHHHHHhcCCCCcc---------eeeeeeee-ccc-cceeEhhhhcCCcEEEeccccccCCCcccccccch
Confidence 12344555555555443311110 11111111 111 11223457889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303 311 LEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 373 (409)
Q Consensus 311 l~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 373 (409)
|+||.+|++.|...+++ ..+.+|+.|+++|++++..+++.+..+...+.
T Consensus 305 i~DA~~LawkLa~vl~g--------------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 305 VQDAYNLGWKLAAVLAG--------------APEALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred HHHHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988775 23678999999999999999999988776654
No 36
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=3e-42 Score=324.18 Aligned_cols=351 Identities=16% Similarity=0.136 Sum_probs=248.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC----CceEEEeCCCCcC--CcccceeccccHHHHHHHcCchhHHHhcccccccee
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLG----IRSMVLESSESLR--VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIV 76 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g----~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
+.+||+||||||+|+++|+.|+++| ++|+|+|+.+.+. ...+++.+++.++++|+++|+++. ...+...+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~~~~ 86 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIEHIH 86 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCcccEEE
Confidence 3589999999999999999999987 4799999986543 345799999999999999999876 334444554
Q ss_pred eeecC-CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCC---cEEe
Q 015303 77 ATPTI-SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADG---TILK 150 (409)
Q Consensus 77 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ 150 (409)
+.+.. .+.. .+..... ......+.++|..|.+.|.+.+. ++++++++++++++++++++++++.++ ++++
T Consensus 87 ~~~~~~~g~~--~~~~~~~--~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~ 162 (398)
T PRK06996 87 VSQRGHFGRT--LIDRDDH--DVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLR 162 (398)
T ss_pred EecCCCCceE--Eeccccc--CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEe
Confidence 44321 1111 1222111 11234568999999999998764 578999999999999889999998865 5899
Q ss_pred ccEEEecCCC-chHHHhhhCCCCCc-ccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCe---EEEEEEecC
Q 015303 151 TKVLIGCDGV-NSIVAKWLGFKNPA-FVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQT---IYWFFTWTS 225 (409)
Q Consensus 151 ad~vV~AdG~-~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~ 225 (409)
||+||+|||. +|.+|+.++..... .++..++.+.+....++. ...+..+...| ++.++|.+++. +.++....+
T Consensus 163 a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~G-~~~~lp~~~~~~~~~~~v~~~~~ 240 (398)
T PRK06996 163 ARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRP-GWAWERFTHEG-PLALLPLGGPRQADYALVWCCAP 240 (398)
T ss_pred eeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCC-CEEEEEecCCC-CeEEeECCCCCCCcEEEEEECCH
Confidence 9999999996 57888888765443 356677777666543332 22333444444 57888998654 333322222
Q ss_pred CCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCccc
Q 015303 226 SSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQ 305 (409)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~ 305 (409)
+........+.+.+.+.+.+.+......+ ... .....++.... ..++|..+||+|+|||||.++|+.||
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~---~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQ 309 (398)
T PRK06996 241 DEAARRAALPDDAFLAELGAAFGTRMGRF---TRI---AGRHAFPLGLN-----AARTLVNGRIAAVGNAAQTLHPVAGQ 309 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccccCce---EEe---cceEEEeeecc-----cccceecCCEEEEEhhhccCCcccch
Confidence 21111123455566666666554321111 110 11112222211 23378899999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHH
Q 015303 306 GGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDK 385 (409)
Q Consensus 306 G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~ 385 (409)
|+|+||+||..||++|... + ....+|+.|+++|++++..++..+..+.++++..++....+|+.
T Consensus 310 G~n~ai~Da~~La~~L~~~--~--------------~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~R~~ 373 (398)
T PRK06996 310 GLNLGLRDAHTLADALSDH--G--------------ATPLALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGA 373 (398)
T ss_pred hHHHHHHHHHHHHHHHHhc--C--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhH
Confidence 9999999999999999651 1 23577999999999999999999999999999999999999999
Q ss_pred HHHH
Q 015303 386 ILAS 389 (409)
Q Consensus 386 ~~~~ 389 (409)
++..
T Consensus 374 ~l~~ 377 (398)
T PRK06996 374 ALTA 377 (398)
T ss_pred HHHH
Confidence 9874
No 37
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=321.83 Aligned_cols=359 Identities=19% Similarity=0.206 Sum_probs=251.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-----ccceeccccHHHHHHHcCchhHHHhc-ccccccee
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-----GFAFTVWTNAWKALDAVGIGNSLRQQ-HQQLRSIV 76 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~ 76 (409)
+++||+||||||+|+++|+.|++.|++|+|+||++.+... .+...+++.++++|+.+|+++.+... ..+.....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 4689999999999999999999999999999999876543 34478999999999999999887543 23444555
Q ss_pred eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--C-ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccE
Q 015303 77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--S-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKV 153 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 153 (409)
++.... ..+.+.......+...+.+++..|.+.|.+++. + ++++ +++|+++..+++.+.|++.+|.+++||+
T Consensus 84 ~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 158 (388)
T PRK07608 84 VFGDAH----ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL 158 (388)
T ss_pred EEECCC----ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence 443221 122222221122333457889999999988663 3 6777 9999999888888999999988899999
Q ss_pred EEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303 154 LIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232 (409)
Q Consensus 154 vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
||+|||.+|.+|+.++...... .....+...+..+..+ ......++.++.+++++|++++...+.+...........
T Consensus 159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 236 (388)
T PRK07608 159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPH--RGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELL 236 (388)
T ss_pred EEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHH
Confidence 9999999999999998765432 2233333333333222 223345556767888999999876544333211111112
Q ss_pred ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
..+++.+.+.+.+.+.. .+.. +... .....++... ...+.|..+||++||||||.++|++|||+|+||+
T Consensus 237 ~~~~~~~~~~~~~~~~~---~~~~-~~~~--~~~~~~~~~~-----~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~ 305 (388)
T PRK07608 237 ALSPEALAARVERASGG---RLGR-LECV--TPAAGFPLRL-----QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLR 305 (388)
T ss_pred CCCHHHHHHHHHHHHHH---hcCC-ceec--CCcceeecch-----hhhhhhhcCceEEEeccccccCCccccccchhHH
Confidence 23445555555443321 1100 1110 1111222221 1234678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHHH
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILASF 390 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~ 390 (409)
||..||++|.......+. ....+|+.|+++|++++..++..++.+..+++.+++....+|+..++.+
T Consensus 306 da~~La~~L~~~~~~~~~-----------~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 372 (388)
T PRK07608 306 DVAALADVLAGREPFRDL-----------GDLRLLRRYERARREDILALQVATDGLQRLFALPGPLARWLRNAGMALV 372 (388)
T ss_pred HHHHHHHHHHHhhccCCC-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 999999999876422111 2247999999999999999999999999999999999999999998854
No 38
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=2.9e-41 Score=329.66 Aligned_cols=356 Identities=19% Similarity=0.210 Sum_probs=245.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+.+.+..+.....+...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~- 100 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD- 100 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC-
Confidence 4579999999999999999999999999999999888778889999999999999999999998777655443333321
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec--CCc-EEeccEEEe
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA--DGT-ILKTKVLIG 156 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~-~~~ad~vV~ 156 (409)
.....+...............+.+..+++.|.+.+ ++++++++++|++++++++.+++++. ++. +++||+||+
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg 179 (547)
T PRK08132 101 -EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA 179 (547)
T ss_pred -CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence 22222222111111112234578889999988765 46899999999999998888777654 444 689999999
Q ss_pred cCCCchHHHhhhCCCCCccc-ceeeEEEeecCCCCCCCCCceeee---ecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303 157 CDGVNSIVAKWLGFKNPAFV-GRSAIRGYSDFKGSHGFEPNFLQF---FGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232 (409)
Q Consensus 157 AdG~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
|||.+|.+|+.++....... ....+...+....... ...+..+ +.++..+++.|.+++.+.+.+....... ...
T Consensus 180 ADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 257 (547)
T PRK08132 180 CDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFP-TERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDAD-PEA 257 (547)
T ss_pred CCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCC-CeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCC-chh
Confidence 99999999999987655432 1222222222222211 1112222 1345566666776664433332222111 111
Q ss_pred ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
..+.+.+.+.+.+.+. ......+.+...+. .....+++|..+||+|+|||||.++|+.|||||+||+
T Consensus 258 ~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~--~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~ 324 (547)
T PRK08132 258 EKKPENVIPRVRALLG-----------EDVPFELEWVSVYT--FQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQ 324 (547)
T ss_pred hcCHHHHHHHHHHHcC-----------CCCCeeEEEEEeee--eeeeeecccccccEEEEecccccCCCcccccccchHH
Confidence 2233444444443332 11011111111111 1122345788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 388 (409)
||.+|++.|...+++. ..+.+|+.|+++|++++..++..+..+..+++..++....+|+.++.
T Consensus 325 DA~~LawkLa~vl~g~-------------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 387 (547)
T PRK08132 325 DADNLAWKLALVLRGR-------------APDSLLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLR 387 (547)
T ss_pred HHHHHHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Confidence 9999999999988764 45789999999999999999999999888888888888888887765
No 39
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=322.93 Aligned_cols=339 Identities=17% Similarity=0.181 Sum_probs=237.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
..+||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+.++++|+.+|+++++...+.+......+. .
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~--~ 81 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA--N 81 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec--C
Confidence 35899999999999999999999999999999999888888999999999999999999999887665555443332 1
Q ss_pred CCcccccc--cccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303 83 GKPSSERS--LKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD 158 (409)
Q Consensus 83 ~~~~~~~~--~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 158 (409)
+..+.... +.............+.+..+++.|.+.+ .+++++++++|++++++++++.+++.+|++++|++||+||
T Consensus 82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGAD 161 (487)
T ss_pred CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECC
Confidence 21111100 1111101112234678888888887654 3689999999999999888888888888899999999999
Q ss_pred CCchHHHhhhCCCCCcccceeeEE-EeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChH
Q 015303 159 GVNSIVAKWLGFKNPAFVGRSAIR-GYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA 237 (409)
Q Consensus 159 G~~S~vr~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
|.+|.+|+.++++.+.......+. .........+.......+....+.+.++|.+++...+++.. +. ...+.+
T Consensus 162 G~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~~----~~~t~~ 235 (487)
T PRK07190 162 GSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRM--DT----KDFTLE 235 (487)
T ss_pred CCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEc--CC----CCCCHH
Confidence 999999999998876543322221 11112111111112222334444677788887654433322 11 233445
Q ss_pred HHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccC-CCcEEEeccCcCCCCCCcccchhhhhhHHHH
Q 015303 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNIS-RGSVCVAGDALHPMTPDIGQGGCAALEDGIV 316 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~ 316 (409)
++.+.+.+.+..... .+..+.++. .+ ......+++|. .+||+|+|||||.++|++|||||+||+||.+
T Consensus 236 ~~~~~l~~~~~~~~~---------~~~~~~w~s-~~-~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~n 304 (487)
T PRK07190 236 QAIAKINHAMQPHRL---------GFKEIVWFS-QF-SVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFN 304 (487)
T ss_pred HHHHHHHHhcCCCCC---------ceEEEEEEE-Ee-eeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHH
Confidence 555555543332111 111221211 11 11233455775 7999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303 317 LARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 373 (409)
Q Consensus 317 la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 373 (409)
|+++|...+++. ..+..|+.|+++|++.+..++..+..+..+..
T Consensus 305 L~wkLa~v~~g~-------------a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~ 348 (487)
T PRK07190 305 LIWKLNMVIHHG-------------ASPELLQSYEAERKPVAQGVIETSGELVRSTK 348 (487)
T ss_pred HHHHHHHHHcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999988864 45799999999999999999999998877664
No 40
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.1e-41 Score=321.41 Aligned_cols=364 Identities=18% Similarity=0.169 Sum_probs=251.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHc---CCceEEEeCCC-C----cCCcccceeccccHHHHHHHcCchhHHHhcccccc
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSE-S----LRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLR 73 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~-~----~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~ 73 (409)
|+++||+||||||+|+++|+.|+++ |++|+|+||.. . +...++++.+++.+++.|+++|+++.+.+.+.+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 3568999999999999999999998 99999999953 2 12345789999999999999999999988776666
Q ss_pred ceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEe
Q 015303 74 SIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILK 150 (409)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 150 (409)
.+.+.+.. .. ....+...........+.+.|..|.+.|.+.+ ++++++++++|+++..+++.+.+++.++.+++
T Consensus 81 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (395)
T PRK05732 81 HIHVSDRG--HA-GFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLT 157 (395)
T ss_pred EEEEecCC--CC-ceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence 55443221 11 11111111111112235688888888887754 46899999999999988888999998888899
Q ss_pred ccEEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcC
Q 015303 151 TKVLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQD 229 (409)
Q Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 229 (409)
+|+||+|||.+|.+|+.++...... .+..++...+...... ....+..+.. +..++++|.++++..++.....+...
T Consensus 158 a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~g~~~~~p~~~g~~~~~~~~~~~~~~ 235 (395)
T PRK05732 158 GRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAH-QGRAFERFTE-HGPLALLPMSDGRCSLVWCHPLEDAE 235 (395)
T ss_pred eCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCC-CCEEEEeecC-CCCEEEeECCCCCeEEEEECCHHHHH
Confidence 9999999999999999987764433 3444544444332211 1222333333 34578899999876554443222111
Q ss_pred cccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhh
Q 015303 230 KELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCA 309 (409)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~ 309 (409)
.....+.+.+.+.+.+.+. .....+.. ......+++... ..++|..+|++|+|||||.++|++|||+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~l~~~-----~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ 304 (395)
T PRK05732 236 EVLSWSDAQFLAELQQAFG---WRLGRITH---AGKRSAYPLALV-----TAAQQISHRLALVGNAAQTLHPIAGQGFNL 304 (395)
T ss_pred HHHcCCHHHHHHHHHHHHH---hhhcceee---cCCcceeccccc-----chhhhccCcEEEEeecccccCCccccccch
Confidence 1122344445555555431 11111111 111112222221 223677899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303 310 ALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389 (409)
Q Consensus 310 al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 389 (409)
||+||..|+++|...+.+.. .....++|+.|+++|++++..++..+..+..++..+..+...+|+.+++.
T Consensus 305 al~Da~~La~~L~~~~~~~~----------~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 374 (395)
T PRK05732 305 GLRDVMSLAETLTQALARGE----------DIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLGLMA 374 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 99999999999988765420 00235889999999999999999999999999998888899999999875
Q ss_pred Hh
Q 015303 390 FL 391 (409)
Q Consensus 390 ~~ 391 (409)
+.
T Consensus 375 ~~ 376 (395)
T PRK05732 375 MD 376 (395)
T ss_pred Hc
Confidence 43
No 41
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=1.7e-41 Score=318.62 Aligned_cols=359 Identities=17% Similarity=0.153 Sum_probs=240.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc--CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL--RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
++||+||||||+|+++|+.|++.|++|+|+|+++.+ ....++..++++++++|+++|+++.+...+.+.....+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD- 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence 479999999999999999999999999999999854 23345667999999999999999999888877777777642
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEE-eCCeEEEEe-cCCc--EEeccEEE
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEE-SGHFKLLHL-ADGT--ILKTKVLI 155 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~-~~~~v~v~~-~~g~--~~~ad~vV 155 (409)
+. ...+++.... .......+.+..+.+.|++.+ .++++++++++++++. +++.+.|++ .+|+ +++||+||
T Consensus 81 -g~-~~~~~~~~~~--~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vV 156 (392)
T PRK08243 81 -GR-RHRIDLTELT--GGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIA 156 (392)
T ss_pred -CE-EEEecccccc--CCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEE
Confidence 22 2334443221 122333566777777777653 4689999999999987 566677777 3664 68999999
Q ss_pred ecCCCchHHHhhhCCCCCc-ccce--eeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303 156 GCDGVNSIVAKWLGFKNPA-FVGR--SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232 (409)
Q Consensus 156 ~AdG~~S~vr~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
+|||.+|.+|+.++..... +... ..+.+.... .+. ..........++.+.++.|.+++...+++.+...... .
T Consensus 157 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 232 (392)
T PRK08243 157 GCDGFHGVSRASIPAGALRTFERVYPFGWLGILAE-APP-VSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKV--E 232 (392)
T ss_pred ECCCCCCchhhhcCcchhhceecccCceEEEEeCC-CCC-CCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCc--c
Confidence 9999999999998654322 2111 223332211 111 1112222223444555555555544444444322211 2
Q ss_pred ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
..+.+...+.+.+.+..... ..++ .........++.. ...+++|..+||+|||||||.++|++|||+|+||+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~--~~~~-~~~~~~~~~~~~~-----~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~ 304 (392)
T PRK08243 233 DWSDERFWDELRRRLPPEDA--ERLV-TGPSIEKSIAPLR-----SFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAAS 304 (392)
T ss_pred cCChhHHHHHHHHhcCcccc--cccc-cCccccccceeee-----eceeccceeCCEEEEecccccCCCCcCcchhHHHH
Confidence 23445556666665543210 0000 0000000111111 12234677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeecc---CchhHHHHHHHHHHH
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS---DGKILNFLRDKILAS 389 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~---~~~~~~~~r~~~~~~ 389 (409)
||..|++.|.+.+++ ....+|+.|++.|++++..++..+..+..+++. ..++...+|+..|+.
T Consensus 305 Da~~La~~L~~~~~~--------------~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (392)
T PRK08243 305 DVRYLARALVEFYRE--------------GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDY 370 (392)
T ss_pred HHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Confidence 999999999987664 236899999999999999999999999888774 455677788888876
Q ss_pred Hhhh
Q 015303 390 FLVG 393 (409)
Q Consensus 390 ~~~~ 393 (409)
++.-
T Consensus 371 ~~~~ 374 (392)
T PRK08243 371 LTSS 374 (392)
T ss_pred HhcC
Confidence 5443
No 42
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=2.2e-42 Score=322.13 Aligned_cols=336 Identities=24% Similarity=0.263 Sum_probs=219.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccc--eeeeecC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRS--IVATPTI 81 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~--~~~~~~~ 81 (409)
.+||+||||||+|+++|+.|+++|++|+||||++.+...+++..+++.++++|+.+|+++.+.....+... ..+....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 37999999999999999999999999999999999988889999999999999999999999887644332 2222210
Q ss_pred CCCcccc---ccccccc-ccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC-----cEEe
Q 015303 82 SGKPSSE---RSLKVQG-KYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-----TILK 150 (409)
Q Consensus 82 ~~~~~~~---~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-----~~~~ 150 (409)
.+..... ....... .........+.|..|.+.|.+.+ .++++++++++++++++++++.+.+.++ ++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEE
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEE
Confidence 1110000 0000000 11234456789999999999876 3589999999999999988876665543 2789
Q ss_pred ccEEEecCCCchHHHhhhCCCCCcccce--eeEEEeecCCCCCCCC-CceeeeecCCcEEEEEecCC-CeEEEEEEecCC
Q 015303 151 TKVLIGCDGVNSIVAKWLGFKNPAFVGR--SAIRGYSDFKGSHGFE-PNFLQFFGKGLRSGFIPCDD-QTIYWFFTWTSS 226 (409)
Q Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 226 (409)
||+||+|||.+|.+|+.++...+..... ..+............. ............++++|..+ +...+.+.+...
T Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 240 (356)
T PF01494_consen 161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFD 240 (356)
T ss_dssp ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETT
T ss_pred EeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeeecc
Confidence 9999999999999999997664333221 1222222211111111 12333334555568899988 333333333333
Q ss_pred Cc--CcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcc
Q 015303 227 SQ--DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIG 304 (409)
Q Consensus 227 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g 304 (409)
.. ........+.+.+.+.+.+.. .. ... .......++... ....+|..+||+|||||||.++|++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~-~~~~~~~~~~~~-----~~~~~~~~grv~LiGDAAh~~~P~~G 308 (356)
T PF01494_consen 241 ESKEERPEEFSPEELFANLPEIFGP---DL---LET-EIDEISAWPIPQ-----RVADRWVKGRVLLIGDAAHAMDPFSG 308 (356)
T ss_dssp TTTCCSTHCHHHHHHHHHHHHHHHT---CH---HHH-EEEEEEEEEEEE-----EEESSSEETTEEE-GGGTEEE-CCTS
T ss_pred ccccccccccccccccccccccccc---cc---ccc-cccccccccccc-----ccccccccceeEEeccceeeeccccc
Confidence 22 111222223333333332211 11 111 222333333322 23346788999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 015303 305 QGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISI 364 (409)
Q Consensus 305 ~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~ 364 (409)
||+|+||+||..|++.|..+.++. ...++|+.|+++|++++..+++.
T Consensus 309 qG~n~Ai~da~~La~~L~~~~~g~-------------~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 309 QGINMAIEDAAALAELLAAALKGE-------------ASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccHHHHHHHHHHHhcCC-------------cHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999988754 55789999999999999998865
No 43
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-40 Score=322.80 Aligned_cols=342 Identities=22% Similarity=0.321 Sum_probs=235.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccccc---ceeeee
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLR---SIVATP 79 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~---~~~~~~ 79 (409)
..+||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..++++++++|+++|+.+++.+.+.+.. ...+..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~ 85 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT 85 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence 35899999999999999999999999999999998888888999999999999999999999988765432 222222
Q ss_pred cCCCCcccccccccccc------------cCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEec
Q 015303 80 TISGKPSSERSLKVQGK------------YGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLA 144 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~------------~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~ 144 (409)
...+..+..+.+..... ..+...+.+.+..|.+.|.+.+ ++++++++++|++++.+++++++++.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~ 165 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVE 165 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEE
Confidence 22333333332221100 1122345688999999998765 46899999999999998888777764
Q ss_pred C---Cc--EEeccEEEecCCCchHHHhhhCCCCCcccc-eeeEEEeecCCC---CCCCCCceeee-ecCCcEEEEEecCC
Q 015303 145 D---GT--ILKTKVLIGCDGVNSIVAKWLGFKNPAFVG-RSAIRGYSDFKG---SHGFEPNFLQF-FGKGLRSGFIPCDD 214 (409)
Q Consensus 145 ~---g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~p~~~ 214 (409)
+ |+ ++++|+||+|||.+|.+|+.++........ ...+..++..+. .......+..+ .+++....+.|..+
T Consensus 166 ~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 245 (545)
T PRK06126 166 DLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDG 245 (545)
T ss_pred ECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECC
Confidence 3 53 689999999999999999999876544321 122222232221 11112223333 45555555666655
Q ss_pred CeEEEEEE-ecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEec
Q 015303 215 QTIYWFFT-WTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAG 293 (409)
Q Consensus 215 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvG 293 (409)
+.. |.+. ...... ....+.+.+.+.+.+.+. ..+.. .+.....|. .....+++|..+||+|+|
T Consensus 246 ~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~-----~i~~~~~w~-----~~~~~a~~~~~gRv~L~G 309 (545)
T PRK06126 246 RDE-WLFHQLRGGED--EFTIDDVDARAFVRRGVG---EDIDY-----EVLSVVPWT-----GRRLVADSYRRGRVFLAG 309 (545)
T ss_pred CCe-EEEEEecCCCC--CCCCCHHHHHHHHHHhcC---CCCCe-----EEEeecccc-----hhheehhhhccCCEEEec
Confidence 443 4443 222221 123445556666665443 11100 000111111 123345578899999999
Q ss_pred cCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeec
Q 015303 294 DALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQ 373 (409)
Q Consensus 294 DAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~ 373 (409)
||||.++|+.|||+|+||+||.+||++|...+++. ..+.+|+.|+++|++++..++..+..+...+.
T Consensus 310 DAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~-------------~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~ 376 (545)
T PRK06126 310 DAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW-------------AGPALLDSYEAERRPIAARNTDYARRNADALG 376 (545)
T ss_pred hhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC-------------CcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999887653 44789999999999999999999987776554
No 44
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=3.4e-40 Score=308.74 Aligned_cols=356 Identities=15% Similarity=0.158 Sum_probs=234.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc--CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL--RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
.+||+||||||+|+++|+.|+++|++|+|+||.+.+ ....++..++++++++|+++|+++++...+.+.....+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~- 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD- 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC-
Confidence 479999999999999999999999999999999853 22345566899999999999999999887777776666542
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEE-eCCeEEEEec-CCc--EEeccEEE
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEE-SGHFKLLHLA-DGT--ILKTKVLI 155 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~-~~~~v~v~~~-~g~--~~~ad~vV 155 (409)
+ ....+++..... ........+..+.+.|.+.+ .++.++++++++.+.. +++.+.|++. +|+ ++++|+||
T Consensus 81 -~-~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI 156 (390)
T TIGR02360 81 -G-QRFRIDLKALTG--GKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA 156 (390)
T ss_pred -C-EEEEEeccccCC--CceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence 2 123333332211 11112345667777777654 2578999998888765 4556677775 775 68999999
Q ss_pred ecCCCchHHHhhhCCCCCc-ccce--eeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCC-eEEEEEEecCCCcCcc
Q 015303 156 GCDGVNSIVAKWLGFKNPA-FVGR--SAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQ-TIYWFFTWTSSSQDKE 231 (409)
Q Consensus 156 ~AdG~~S~vr~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~ 231 (409)
+|||.+|.+|++++..... +.+. ..|.+...... . .... ..+...+..+.++|..++ ...|++....... .
T Consensus 157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 231 (390)
T TIGR02360 157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP-P-VSHE-LIYSNHERGFALCSMRSATRSRYYVQVPLTDK--V 231 (390)
T ss_pred ECCCCchhhHHhcCcccceeeeccCCcceEEEecCCC-C-CCCc-eEEEeCCCceEEEeccCCCcceEEEEcCCCCC--h
Confidence 9999999999998554322 2221 23344332111 1 1111 234444555667777533 2234444332211 1
Q ss_pred cccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhh
Q 015303 232 LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAAL 311 (409)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al 311 (409)
...+.+.+.+.+.+.+ .+.+.+++...........+.. ....++|..+||+|||||||.++|+.|||+|+||
T Consensus 232 ~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~ai 303 (390)
T TIGR02360 232 EDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPLR-----SFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA 303 (390)
T ss_pred hhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeHH-----hhccccCccCCEEEEEccccCCCCCcCCchhHHH
Confidence 2333444555665544 3444433332211111111221 1223467889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccC---chhHHHHHHHHHH
Q 015303 312 EDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSD---GKILNFLRDKILA 388 (409)
Q Consensus 312 ~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~---~~~~~~~r~~~~~ 388 (409)
+||..|+++|.+.... ....+|+.|++.|++++..+++.|+.+..+++.. .+....++..-|.
T Consensus 304 eDA~~La~~L~~~~~~--------------~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
T TIGR02360 304 SDVHYLYEALLEHYQE--------------GSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELE 369 (390)
T ss_pred HHHHHHHHHHHHHhcc--------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence 9999999999875432 4578999999999999999999999988887622 3444455555555
Q ss_pred HHh
Q 015303 389 SFL 391 (409)
Q Consensus 389 ~~~ 391 (409)
.++
T Consensus 370 ~~~ 372 (390)
T TIGR02360 370 YLL 372 (390)
T ss_pred HHh
Confidence 433
No 45
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=5.5e-34 Score=267.25 Aligned_cols=321 Identities=17% Similarity=0.181 Sum_probs=209.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
|||+||||||||+++|+.|++.|++|+|+|+.. +....|+..+++ ..++.+++++++... .+.+..++... +.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~-~~ 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISPS-RV 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcCC-Cc
Confidence 799999999999999999999999999999982 344557777776 567788887776543 34455555432 21
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecC------C--cEEeccEE
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLAD------G--TILKTKVL 154 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~------g--~~~~ad~v 154 (409)
. .....+. . ......++|..|++.|.+++ .+++++.+ +|+++..+++.+.+++.+ + .+++||+|
T Consensus 74 ~-~~~~~~~---~-~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 74 P-IKVTIPS---E-DGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVV 147 (388)
T ss_pred e-eeeccCC---C-CCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEE
Confidence 1 1111110 0 11123589999999999876 36788655 699998888888887663 2 37999999
Q ss_pred EecCCCchHHHhhhCCCCCcccceeeEEEeecCCCC-CCCC-Cceeeee----cCCcEEEEEecCCCeEEEEEEecCCCc
Q 015303 155 IGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGS-HGFE-PNFLQFF----GKGLRSGFIPCDDQTIYWFFTWTSSSQ 228 (409)
Q Consensus 155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~ 228 (409)
|+|||.+|.+|+.++.+.... ...++...+..+.. .... .....++ .++.+.|++|.++. .........
T Consensus 148 I~AdG~~S~v~r~lg~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~~~--- 222 (388)
T TIGR02023 148 IGADGANSPVAKELGLPKNLP-RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGTGT--- 222 (388)
T ss_pred EECCCCCcHHHHHcCCCCCCc-EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEECC---
Confidence 999999999999998764322 11223333322221 1112 2223333 34568899999854 333222111
Q ss_pred CcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchh
Q 015303 229 DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGC 308 (409)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~ 308 (409)
...+.+++.+.+.+.+. + ...+.......++... ..+++..+++++||||||.++|++|+|++
T Consensus 223 ---~~~~~~~~~~~l~~~~~-~--------~~~~~~~~~~~~ip~~-----~~~~~~~~~v~lvGDAAg~v~P~tG~GI~ 285 (388)
T TIGR02023 223 ---HGFDAKQLQANLRRRAG-L--------DGGQTIRREAAPIPMK-----PRPRWDFGRAMLVGDAAGLVTPASGEGIY 285 (388)
T ss_pred ---CCCCHHHHHHHHHHhhC-C--------CCceEeeeeeEecccc-----ccccccCCCEEEEeccccCcCCcccccHH
Confidence 12234444444544332 0 0000001111111111 12256778999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeecc
Q 015303 309 AALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS 374 (409)
Q Consensus 309 ~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 374 (409)
+||.+|..+|+.|.+++.++ ....|+.|++.++......+..+..+..++..
T Consensus 286 ~A~~sg~~aa~~i~~~l~~~--------------~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 337 (388)
T TIGR02023 286 FAMKSGQMAAQAIAEYLQNG--------------DATDLRHYERKFMKLYGTTFRVLRVLQMVYYR 337 (388)
T ss_pred HHHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999988642 14679999999998887777777777777643
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=6.2e-34 Score=268.64 Aligned_cols=334 Identities=15% Similarity=0.129 Sum_probs=209.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
+++||+||||||||+++|+.|+++|++|+|+||... ....|+..++. ..++++|+++.+... .+....+....
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~lgl~~~~~~~--~i~~~~~~~p~- 110 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEFDLPLDIIDR--KVTKMKMISPS- 110 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhhcCcHHHHHH--HhhhheEecCC-
Confidence 358999999999999999999999999999999853 44567777764 667788887766442 23344444321
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe---CCeEEEEecC-------C--cE
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES---GHFKLLHLAD-------G--TI 148 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~---~~~v~v~~~~-------g--~~ 148 (409)
+. .+.+...... .....+++|..|++.|++++ .+++++.+ ++++++.. ++.+.|++.+ + .+
T Consensus 111 ~~---~v~~~~~~~~-~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~ 185 (450)
T PLN00093 111 NV---AVDIGKTLKP-HEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT 185 (450)
T ss_pred ce---EEEecccCCC-CCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence 11 1222211110 12223689999999999876 46788765 57777643 2446666532 3 47
Q ss_pred EeccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCC-CCCC-Cceeeeec----CCcEEEEEecCCCeEEEEEE
Q 015303 149 LKTKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGS-HGFE-PNFLQFFG----KGLRSGFIPCDDQTIYWFFT 222 (409)
Q Consensus 149 ~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~----~~~~~~~~p~~~~~~~~~~~ 222 (409)
++||+||+|||.+|.+|+.++.... .....+...+..+.. .... .....+++ ++.+.|++|.++. ....+.
T Consensus 186 v~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~g 262 (450)
T PLN00093 186 LEVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTG 262 (450)
T ss_pred EEeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEEE
Confidence 9999999999999999999987532 111222222222221 1112 22344443 5568899999964 333332
Q ss_pred ecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCC
Q 015303 223 WTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPD 302 (409)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~ 302 (409)
.... ..+...+.+.+.+.+. ..+...+.......++... ...++..++++|||||||.++|+
T Consensus 263 ~~~~------~~~~~~~~~~l~~~~~-------~~l~~~~~~~~~~~~ip~~-----~~~~~~~~~vlLvGDAAg~v~P~ 324 (450)
T PLN00093 263 TVVN------KPAIKKYQRATRNRAK-------DKIAGGKIIRVEAHPIPEH-----PRPRRVRGRVALVGDAAGYVTKC 324 (450)
T ss_pred EccC------CCChHHHHHHHHHHhh-------hhcCCCeEEEEEEEEcccc-----cccceeCCCcEEEeccccCCCcc
Confidence 1111 1122233333332211 1111111112222222221 12256788999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhH
Q 015303 303 IGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKIL 379 (409)
Q Consensus 303 ~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~ 379 (409)
+|+||+.||.++..+|+.+.+++.+++ .+.....|+.|++.++......+..+..+.+++..+++..
T Consensus 325 tGeGI~~Am~sg~~AAe~i~~~~~~g~----------~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~~~ 391 (450)
T PLN00093 325 SGEGIYFAAKSGRMCAEAIVEGSENGT----------RMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNPAR 391 (450)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCC----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999999876421 0123567899999888888888888887777776544433
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=100.00 E-value=1e-33 Score=256.84 Aligned_cols=288 Identities=22% Similarity=0.237 Sum_probs=189.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
|||+||||||+|+++|+.|++.|++|+|+||+..+....++..+++.+.+.+...+.. .. .......++.. .+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----~~~~~~~~~~~-~~~ 74 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-IV----NLVRGARFFSP-NGD 74 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-hh----hheeeEEEEcC-CCc
Confidence 6999999999999999999999999999999988777778888888777776655421 11 11222233222 221
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC-cEEeccEEEecCCCc
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~~~ad~vV~AdG~~ 161 (409)
.. ..... ......++|..|.+.|.+.+ .+++++++++|+++..+++.+.+.+.++ .++++|+||+|||.+
T Consensus 75 ~~-~~~~~------~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 75 SV-EIPIE------TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EE-EeccC------CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 11 11111 23345789999999998876 3689999999999998888877766554 579999999999999
Q ss_pred hHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeec----CCcEEEEEecCCCeEEEEEEecCCCcCcccccChH
Q 015303 162 SIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFG----KGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA 237 (409)
Q Consensus 162 S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
|.+|+.++...........+...+..+...........+.+ ++.+.+++|+++++..+.+....+. ...+.+
T Consensus 148 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~ 223 (295)
T TIGR02032 148 SIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDLK 223 (295)
T ss_pred hHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCHH
Confidence 99999887654322222333334443322222233344443 3568899999998765555544322 123333
Q ss_pred HHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHH
Q 015303 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVL 317 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~l 317 (409)
+..+.+.+. .+. +..........++.... ....++..+||+++|||||+++|++|||||+||+||..|
T Consensus 224 ~~~~~~~~~---~~~-----l~~~~~~~~~~~~~~~~----~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~a 291 (295)
T TIGR02032 224 KYLKDFLAR---RPE-----LKDAETVEVIGAPIPIG----RPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVA 291 (295)
T ss_pred HHHHHHHHh---Ccc-----cccCcEEeeeceeeccC----CCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHH
Confidence 333333332 221 11111112222222222 123366789999999999999999999999999999999
Q ss_pred HHHH
Q 015303 318 ARCI 321 (409)
Q Consensus 318 a~~l 321 (409)
|++|
T Consensus 292 a~~~ 295 (295)
T TIGR02032 292 AEVI 295 (295)
T ss_pred HhhC
Confidence 9875
No 48
>PRK11445 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=261.20 Aligned_cols=329 Identities=18% Similarity=0.113 Sum_probs=201.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC----CcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR----VTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+||+||||||||+++|+.|++. ++|+|+|+.+.+. ...|+..+++++.+.|+++|++........+ .....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~~~--- 76 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIFAV--- 76 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-cccee---
Confidence 7999999999999999999999 9999999987543 3458899999999999999985321110000 00000
Q ss_pred CCCCcccccccccc-cccCCccceeccHHHHHHHHHhhC-CCceEEeCCeEEEEEEeCCeEEEEe-cCCc--EEeccEEE
Q 015303 81 ISGKPSSERSLKVQ-GKYGEHEMRCVRRKLLLETLAKEL-PSGTIRYSSQVVSIEESGHFKLLHL-ADGT--ILKTKVLI 155 (409)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~-~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~--~~~ad~vV 155 (409)
..+++... ..........++|..|++.|.+.. .++++++++++++++++++++.|++ .+|+ +++||+||
T Consensus 77 ------~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV 150 (351)
T PRK11445 77 ------KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLV 150 (351)
T ss_pred ------eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEE
Confidence 01111100 000112334699999999998765 4689999999999998888888876 4564 68999999
Q ss_pred ecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeee---cCCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303 156 GCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFF---GKGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232 (409)
Q Consensus 156 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
+|||.+|.+|+.++.... ......+..++....+.+ ....++ ....+.|.+|.++... ....+ +.
T Consensus 151 ~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~~W~~p~~~~~~-~g~~~-~~------ 218 (351)
T PRK11445 151 GADGANSMVRRHLYPDHQ-IRKYVAIQQWFAEKHPVP---FYSCIFDNEITDCYSWSISKDGYFI-FGGAY-PM------ 218 (351)
T ss_pred ECCCCCcHHhHHhcCCCc-hhhEEEEEEEecCCCCCC---CcceEEeccCCCceEEEeCCCCcEE-ecccc-cc------
Confidence 999999999999865422 122223333333222111 111112 1234677788765322 11111 11
Q ss_pred ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
.+.....+.+.+.+........+.+... . .... .+..........+|+++||||||.++|++|+|++.||+
T Consensus 219 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~---~~~~---~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~ 289 (351)
T PRK11445 219 -KDGRERFETLKEKLSAFGFQFGKPVKTE--A---CTVL---RPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALD 289 (351)
T ss_pred -cchHHHHHHHHHHHHhcccccccccccc--c---cccc---CcccccccccCCCCEEEEEcccCccCCccCccHHHHHH
Confidence 0111112222222222111111111110 0 0000 01100000224589999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHHH
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILAS 389 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 389 (409)
||..|++.|.+.. ...++.|++.++.....+... .+..+--+..++|.+++++
T Consensus 290 sa~~la~~l~~~~------------------~~~~~~y~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 342 (351)
T PRK11445 290 SARILSEVLNKQP------------------EKLNTAYWRKTRKLRLKLFGK------ILKSPFMYNPALRKLIMRS 342 (351)
T ss_pred hHHHHHHHHHhcc------------------cchHHHHHHHHHHHHHHHHHH------HhcChhhhhHHHHHHHHHh
Confidence 9999999998733 356889998887766444322 2344445667888888875
No 49
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=7.1e-33 Score=259.45 Aligned_cols=332 Identities=16% Similarity=0.129 Sum_probs=204.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+||||||||+++|+.|+++|++|+|+||... ....|+..+++ ..++++|+++.+... .+....++... +
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~-~~~~cg~~i~~---~~l~~~g~~~~~~~~--~i~~~~~~~p~-~- 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD-NAKPCGGAIPL---CMVDEFALPRDIIDR--RVTKMKMISPS-N- 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hhHhhccCchhHHHh--hhceeEEecCC-c-
Confidence 5999999999999999999999999999999754 34557777764 667888887665442 23344443221 1
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEE---eCCeEEEEe--cC-----C--cEEe
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEE---SGHFKLLHL--AD-----G--TILK 150 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~---~~~~v~v~~--~~-----g--~~~~ 150 (409)
....+...... ......++|..|++.|.+++ .+++++.++ +++++. .++.+.|++ .+ | .+++
T Consensus 73 --~~~~~~~~~~~-~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~ 148 (398)
T TIGR02028 73 --IAVDIGRTLKE-HEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLE 148 (398)
T ss_pred --eEEEeccCCCC-CCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEE
Confidence 11222111111 11123689999999999876 368887774 777653 234455543 22 3 3799
Q ss_pred ccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCC-CCCC-Cceeeeec----CCcEEEEEecCCCeEEEEEEec
Q 015303 151 TKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGS-HGFE-PNFLQFFG----KGLRSGFIPCDDQTIYWFFTWT 224 (409)
Q Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~ 224 (409)
||+||+|||.+|.+|+.++.... .....+...+..+.. .... .....+++ ++++.|++|.++. ....+...
T Consensus 149 a~~VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~ 225 (398)
T TIGR02028 149 VDAVIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTV 225 (398)
T ss_pred eCEEEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeC
Confidence 99999999999999999986532 112222222332221 1112 22334443 5668999999854 33322211
Q ss_pred CCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcc
Q 015303 225 SSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIG 304 (409)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g 304 (409)
. ..... +.+++.+... ....+.......+...++.... .+++..+++++||||||.++|++|
T Consensus 226 -~-----~~~~~----~~~~~~l~~~---~~~~~~~~~~~~~~~~~ip~~~-----~~~~~~~~~llvGDAAg~v~P~tG 287 (398)
T TIGR02028 226 -A-----AKPEI----KRLQSGIRAR---AAGKVAGGRIIRVEAHPIPEHP-----RPRRVVGRVALVGDAAGYVTKCSG 287 (398)
T ss_pred -C-----CCccH----HHHHHhhhhh---hhhccCCCcEEEEEEEeccccc-----cccEECCCEEEEEcCCCCCCcccc
Confidence 1 01111 2233322211 0000111111122222222211 225667899999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhH
Q 015303 305 QGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKIL 379 (409)
Q Consensus 305 ~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~ 379 (409)
+||+.||.++..+|+.+.+++..++. ......|+.|++.++......+..+..+.+++..++...
T Consensus 288 eGI~~A~~sg~~aa~~i~~~~~~~~~----------~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (398)
T TIGR02028 288 EGIYFAAKSGRMCAEAIVEESRLGGA----------VTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRSNAGR 352 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCC----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999998864310 124577999999888877777777777777766544333
No 50
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=9.3e-32 Score=252.19 Aligned_cols=325 Identities=19% Similarity=0.148 Sum_probs=204.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccc-eeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFA-FTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
++|||+||||||||++||+.|++.|++|+|+||+..+..+.++ ..+++..++.+......+ .........++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~----i~~~v~~~~~~~~- 76 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE----IERKVTGARIYFP- 76 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh----hheeeeeeEEEec-
Confidence 4699999999999999999999999999999999998766555 666664444332221111 1112222233222
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecC-CcEEeccEEEecC
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLAD-GTILKTKVLIGCD 158 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~-g~~~~ad~vV~Ad 158 (409)
... ..+..+ ....+.++|..|+++|++.+ .+++++.+++++.+..+++++.+.... +.++++++||+||
T Consensus 77 ~~~--~~~~~~------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~Ad 148 (396)
T COG0644 77 GEK--VAIEVP------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDAD 148 (396)
T ss_pred CCc--eEEecC------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECC
Confidence 111 111111 13467899999999999876 478999999999999988775555444 4689999999999
Q ss_pred CCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeee-----ecCCcEEEEEecCCCeEEEEEEecCCCcCcccc
Q 015303 159 GVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQF-----FGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELE 233 (409)
Q Consensus 159 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 233 (409)
|.+|.+++.++.. ... +.....+.......+........+ ...+++.|++|.+++.+...+...... .. ..
T Consensus 149 G~~s~l~~~lg~~-~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~-~~ 224 (396)
T COG0644 149 GVNSALARKLGLK-DRK-PEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PS-LS 224 (396)
T ss_pred CcchHHHHHhCCC-CCC-hhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cC-CC
Confidence 9999999999888 211 111112222211111111111222 245778999999999776666655443 11 11
Q ss_pred cChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccc-cCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 234 DHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGN-ISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
.. . +.+++|...+. ....+......+.....+....+. .. +..+++++|||||++++|++|+|+..||.
T Consensus 225 ~~----~-~~l~~f~~~~~-~~~~~~~~~~~~~~~~~ip~~g~~----~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~ 294 (396)
T COG0644 225 PF----L-ELLERFKEHPA-IRKLLLGGKILEYAAGGIPEGGPA----SRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIK 294 (396)
T ss_pred ch----H-HHHHHHHhCcc-cchhccCCceEEEeeeecccCCcC----CCccccCCEEEEeccccCCCCcccCcHHHHHH
Confidence 11 1 22222222221 111111112222222222222222 13 57789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVG 369 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~ 369 (409)
+|..+|+.|.++..+ . ...|..|++.++.....-........
T Consensus 295 sg~~Aa~~i~~~~~~--------------~-~~~l~~Y~~~~~~~~~~~~~~~~~~~ 336 (396)
T COG0644 295 SGKLAAEAIAEALEG--------------G-EEALAEYERLLRKSLAREDLKSLRLL 336 (396)
T ss_pred HHHHHHHHHHHHHHc--------------C-hhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999998764 1 56777788777765555444443333
No 51
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=2.5e-32 Score=274.25 Aligned_cols=324 Identities=20% Similarity=0.179 Sum_probs=212.9
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcC--chhHHHhccccccceeeeecC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVG--IGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~~~~~~~~~~~ 81 (409)
+|+||||||+||++|+.|++. |++|+|+||++.....|+++.+++++++.|+.++ +...+......+....+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF-- 79 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE--
Confidence 899999999999999999998 8999999999887778899999999998888776 3333333333333344332
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG 159 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 159 (409)
.+... ... ...+..+.|..|.+.|++++. +++++++++|+++... ..++|+||+|||
T Consensus 80 ~g~~~-----~~~----g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgADG 138 (765)
T PRK08255 80 KGRRI-----RSG----GHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASDG 138 (765)
T ss_pred CCEEE-----EEC----CeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcCC
Confidence 12110 001 122346899999999998763 6899999998776421 147999999999
Q ss_pred CchHHHhhhCCCC-Cc-c--cceeeEEEeecCCCCCCCCCcee-eeecCCc-EEEEEecCCCeEEEEEEecCCCcCc--c
Q 015303 160 VNSIVAKWLGFKN-PA-F--VGRSAIRGYSDFKGSHGFEPNFL-QFFGKGL-RSGFIPCDDQTIYWFFTWTSSSQDK--E 231 (409)
Q Consensus 160 ~~S~vr~~l~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~--~ 231 (409)
.+|.+|+.+.... +. . .....|.+...... ...+. .....+. ....+|..++..+|++....+.... .
T Consensus 139 ~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~~~----~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 214 (765)
T PRK08255 139 LNSRIRTRYADTFQPDIDTRRCRFVWLGTHKVFD----AFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGL 214 (765)
T ss_pred CCHHHHHHHHhhcCCceecCCCceEEecCCCccc----ceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCC
Confidence 9999999763211 11 1 11122332211111 00110 0112221 2345787777666666553221111 1
Q ss_pred cccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCc----EEEeccCcCCCCCCcccch
Q 015303 232 LEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGS----VCVAGDALHPMTPDIGQGG 307 (409)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~lvGDAA~~~~P~~g~G~ 307 (409)
...+.+...+.+.+.+..+.+.. .++..........|.... ....++|..+| ++|+|||||.++|+.|||+
T Consensus 215 ~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~----~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~ 289 (765)
T PRK08255 215 DEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFP----RVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGT 289 (765)
T ss_pred ccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecc----eeccCCCccCCCcccEEEEEcCcccCCCCcchhH
Confidence 22355667777888777665432 222221110111121111 11234788888 9999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCc
Q 015303 308 CAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDG 376 (409)
Q Consensus 308 ~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~ 376 (409)
|+||+||..|+++|.... ..++.+|+.|++.|++++..++..++.+..++...+
T Consensus 290 ~~aieDa~~La~~L~~~~---------------~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~~ 343 (765)
T PRK08255 290 KLALEDAIELARCLHEHP---------------GDLPAALAAYEEERRVEVLRIQNAARNSTEWFENVE 343 (765)
T ss_pred HHHHHHHHHHHHHHHHcc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecc
Confidence 999999999999998731 156899999999999999999999998888886543
No 52
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-30 Score=225.64 Aligned_cols=381 Identities=15% Similarity=0.115 Sum_probs=279.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccc-cccceeeeecCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQ-QLRSIVATPTIS 82 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~~~~~~~~~~ 82 (409)
.+||+|||||.+|.++|+.|+|.|.+|.||||+-.....--|..++|.+...|.++|+.|.++.... ...++.++. +
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk--~ 122 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK--D 122 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe--C
Confidence 5799999999999999999999999999999998777677789999999999999999998877543 344555553 3
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe---EEEEecCCc--EEeccEE
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF---KLLHLADGT--ILKTKVL 154 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~--~~~ad~v 154 (409)
++. ..++++.......+.....+..+|.+.|++.+ +++++..++ |+++-++++. |+...++|+ +..|.+-
T Consensus 123 gk~-v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~gvvkGV~yk~k~gee~~~~ApLT 200 (509)
T KOG1298|consen 123 GKE-VDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT 200 (509)
T ss_pred Cce-eeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhccCeEEeEEEecCCCceEEEecceE
Confidence 332 34555544444456677788899999998865 678888775 4444444433 333334444 5678999
Q ss_pred EecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCccccc
Q 015303 155 IGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELED 234 (409)
Q Consensus 155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 234 (409)
|.|||..|.+||.+-.+.... -..+++|++......+.+...+..+++-..+.++|++...+.+.+-......+ ..
T Consensus 201 vVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~P---si 276 (509)
T KOG1298|consen 201 VVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLP---SI 276 (509)
T ss_pred EEecchhHHHHHHhcCCcccc-cchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCC---cc
Confidence 999999999999985533321 22345666555444455667778888777889999999888777777665443 33
Q ss_pred ChHHHHHHHHHHhC-CCChHHHHHHHc-CCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 235 HSAELKQFVLGKLH-DLPAQVKAVIEK-TPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
...+++.++.+.+. ..++.+++.+.. ...+.+...|....++ +.....+++++|||..+-||++|.||..|+.
T Consensus 277 ~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa-----~~~~~~G~illGDAfNMRHPltggGMtV~l~ 351 (509)
T KOG1298|consen 277 ANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPA-----TLNDKKGVILLGDAFNMRHPLTGGGMTVALS 351 (509)
T ss_pred cchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCC-----CcCCCCceEEEcccccccCCccCCceEeehh
Confidence 44566777777776 666666665543 3333444444444333 3456788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeecc-CchhHHHHHHHHHHHHh
Q 015303 313 DGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQS-DGKILNFLRDKILASFL 391 (409)
Q Consensus 313 ~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~-~~~~~~~~r~~~~~~~~ 391 (409)
|+..|-+.|..... ..+.+.+.+.+.+|...|++....+.-++..++.++.. .+.....+|...+.++-
T Consensus 352 Di~lLr~ll~pl~d----------L~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~ 421 (509)
T KOG1298|consen 352 DIVLLRRLLKPLPD----------LSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLK 421 (509)
T ss_pred HHHHHHHHhccccc----------cccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 99999999877322 23366888999999999999999999999999999986 78888899999988654
Q ss_pred hhhh--cccccCCCCccc
Q 015303 392 VGLL--LKKADFDCGNLT 407 (409)
Q Consensus 392 ~~~~--~~~~~~~~g~~~ 407 (409)
..=. .+...++.|-.|
T Consensus 422 ~GG~c~sGpv~lLsGlnP 439 (509)
T KOG1298|consen 422 RGGFCVSGPVALLSGLNP 439 (509)
T ss_pred cCCccccchHHHhcCCCC
Confidence 3322 344555555544
No 53
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-30 Score=245.72 Aligned_cols=346 Identities=16% Similarity=0.128 Sum_probs=197.5
Q ss_pred CC-CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-ccceeccccHHHHHHHcCchh-HHHhccccccceee
Q 015303 1 ME-SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-GFAFTVWTNAWKALDAVGIGN-SLRQQHQQLRSIVA 77 (409)
Q Consensus 1 m~-~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~~~~~ 77 (409)
|+ .+|||+||||||||+++|+.|++.|++|+|+||.+.+..+ .++..++....+.+.. ++.. ...........+.+
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISF 79 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEE
Confidence 54 3599999999999999999999999999999999887654 3455555433332210 1211 00011111112222
Q ss_pred eecCCCCcccccccccccc-cCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEE
Q 015303 78 TPTISGKPSSERSLKVQGK-YGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVL 154 (409)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 154 (409)
... .+. ..+++..... ......+.+.|..|+++|.+++ .+++++.+++|+.+..+++++.+...++.+++||+|
T Consensus 80 ~~~-~~~--~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~V 156 (429)
T PRK10015 80 LTE-ESA--VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVV 156 (429)
T ss_pred EeC-CCc--eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEE
Confidence 221 111 1222221110 0012356789999999998866 478999999999998877776644445567999999
Q ss_pred EecCCCchHHHhhhCCCCCcccceeeEEEe---ecCCCCC--------CCCCceeeeec--CCc---EEEEEecCCCeEE
Q 015303 155 IGCDGVNSIVAKWLGFKNPAFVGRSAIRGY---SDFKGSH--------GFEPNFLQFFG--KGL---RSGFIPCDDQTIY 218 (409)
Q Consensus 155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~--~~~---~~~~~p~~~~~~~ 218 (409)
|+|||.+|.+++.++........ ....+. ...+... .....+..+++ .++ ..++++. ++.+.
T Consensus 157 I~AdG~~s~v~~~lg~~~~~~~~-~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~-~d~v~ 234 (429)
T PRK10015 157 ILADGVNSMLGRSLGMVPASDPH-HYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTN-KDSIS 234 (429)
T ss_pred EEccCcchhhhcccCCCcCCCcC-eEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEc-CCcEE
Confidence 99999999999998774332222 111222 2221110 00001111111 011 1223333 33343
Q ss_pred EEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceE--eecccccCcccccccccCCCcEEEeccCc
Q 015303 219 WFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSII--SSRLQYRQPQEVLWGNISRGSVCVAGDAL 296 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~lvGDAA 296 (409)
..+.+...... ....++.++. +.+. .++.+.+++......+.. ..|..... ..++...+++++|||||
T Consensus 235 vGv~~~~~~~~-~~~~~~~~~l----~~~~-~~p~~~~~~~~~~~~e~~~~~ip~gg~~----~~~~~~~~g~llvGDAA 304 (429)
T PRK10015 235 LGLVCGLGDIA-HAQKSVPQML----EDFK-QHPAIRPLISGGKLLEYSAHMVPEGGLA----MVPQLVNDGVMIVGDAA 304 (429)
T ss_pred EEEEEehhhhc-cCCCCHHHHH----HHHh-hChHHHHHhcCCEEEEEeeEEcccCCcc----cCCccccCCeEEEeccc
Confidence 33322211110 1223333333 3332 355566666543322221 11211110 11256789999999999
Q ss_pred CCCCC--CcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhh-HHHHHHHHHHhheeec
Q 015303 297 HPMTP--DIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWR-CFELISIAYLVGSIQQ 373 (409)
Q Consensus 297 ~~~~P--~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~s~~~~~~~~ 373 (409)
++++| ++|+||+.||.++..+|+.+.+++..+| .....|+.|++.++.. +.+-....+.+..++.
T Consensus 305 g~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d------------~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~ 372 (429)
T PRK10015 305 GFCLNLGFTVRGMDLAIASAQAAATTVIAAKERAD------------FSASSLAQYKRELEQSCVMRDMQHFRKIPALME 372 (429)
T ss_pred ccccccCccccchhHHHHHHHHHHHHHHHHHhcCC------------CccccHHHHHHHHHHCHHHHHHHHHhChHhhhc
Confidence 99985 6999999999999999999999887532 4467789998887755 4343444555555554
Q ss_pred c
Q 015303 374 S 374 (409)
Q Consensus 374 ~ 374 (409)
.
T Consensus 373 ~ 373 (429)
T PRK10015 373 N 373 (429)
T ss_pred C
Confidence 4
No 54
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.98 E-value=2.9e-31 Score=232.32 Aligned_cols=369 Identities=17% Similarity=0.209 Sum_probs=261.1
Q ss_pred cccEEEECCChHHHHHHHHHHHc----CCceEEEeCCCCcCC---------cccceeccccHHHHHHHcCchhHHHh-cc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESLRV---------TGFAFTVWTNAWKALDAVGIGNSLRQ-QH 69 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~----g~~V~v~E~~~~~~~---------~~~~~~~~~~~~~~l~~~gl~~~~~~-~~ 69 (409)
.|||+||||||+|+++|..|... .++|.|+|-...+.- ..+-..+++.+...++.+|.|+.+.. +.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~ 115 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY 115 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence 68999999999999999999853 479999998744311 12446688899999999999987765 44
Q ss_pred ccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHH-----hhCCCceEEeCCeEEEEEEe--------C
Q 015303 70 QQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLA-----KELPSGTIRYSSQVVSIEES--------G 136 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~-----~~~~~~~i~~~~~v~~i~~~--------~ 136 (409)
.+..++..++.-... .+.++...- .....+++....+...|+ .+.+++++....++..+... +
T Consensus 116 ~~~~~~~v~Ds~s~a---~I~~~~d~~-~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~ 191 (481)
T KOG3855|consen 116 QKFSRMLVWDSCSAA---LILFDHDNV-GIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG 191 (481)
T ss_pred ccccceeeecccchh---hhhhccccc-cccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence 555666665543322 222322211 112234555545554444 34467899999998887653 2
Q ss_pred CeEEEEecCCcEEeccEEEecCCCchHHHhhhCCCCCcc-cceeeEEEeecCCC-CCCCCCceeeeecCCcEEEEEecCC
Q 015303 137 HFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFKNPAF-VGRSAIRGYSDFKG-SHGFEPNFLQFFGKGLRSGFIPCDD 214 (409)
Q Consensus 137 ~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~ 214 (409)
..+.+++.+|..+.+|++|+|||.+|.+|+..++..... +.+++.++...+.. .......|+.|+..|. ++++|+++
T Consensus 192 ~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~Gp-iAllpl~d 270 (481)
T KOG3855|consen 192 MWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGP-IALLPLSD 270 (481)
T ss_pred ceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCc-eeeccccc
Confidence 347888999999999999999999999999998887664 67777787777665 4444567888888884 78999998
Q ss_pred CeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHH------H-----------HHHHcC-CCCc------e--Ee
Q 015303 215 QTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQV------K-----------AVIEKT-PLDS------I--IS 268 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~-~~~~------~--~~ 268 (409)
+-........++........+++.+.+.+...|..-.+.+ . .++... ...+ + ..
T Consensus 271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~ 350 (481)
T KOG3855|consen 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG 350 (481)
T ss_pred ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEec
Confidence 8553333333333334466777777777666655111110 0 111110 0001 1 11
Q ss_pred ecccccCccccc-ccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhh-ccCCCCCCchhhhhhhHHHH
Q 015303 269 SRLQYRQPQEVL-WGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK-TKQGVGEEDEEEFNKRVEMG 346 (409)
Q Consensus 269 ~~~~~~~~~~~~-~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 346 (409)
...+..+|.... ++.|..+|+.++|||||.++|+.|||.|++..|...|...|.++.. +.|+ .+..-
T Consensus 351 dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~Dl-----------gS~~~ 419 (481)
T KOG3855|consen 351 DKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDL-----------GSVEH 419 (481)
T ss_pred ccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccc-----------cchhh
Confidence 122333343322 3368889999999999999999999999999999999999999987 6766 34788
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303 347 LKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388 (409)
Q Consensus 347 l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 388 (409)
|+.|+.+|.+....+.-....+.++|+.+.|.+..+|.++|.
T Consensus 420 L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~ 461 (481)
T KOG3855|consen 420 LEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQ 461 (481)
T ss_pred hhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchh
Confidence 999999999999999999999999999999999999998887
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.97 E-value=2.8e-29 Score=237.24 Aligned_cols=342 Identities=17% Similarity=0.149 Sum_probs=195.7
Q ss_pred CC-CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcc-cceeccccHHHHHHHcCchhHHHhc-----ccccc
Q 015303 1 ME-SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTG-FAFTVWTNAWKALDAVGIGNSLRQQ-----HQQLR 73 (409)
Q Consensus 1 m~-~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~ 73 (409)
|+ .+|||+||||||||+++|+.|+++|++|+|+||.+.++.+. ++..++.... +.+ ...+... .....
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~---e~l--~~~~~~~~~~~~~~~~~ 75 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL---EHI--IPGFADSAPVERLITHE 75 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhH---HHH--hhhhhhcCcccceeeee
Confidence 54 36999999999999999999999999999999998876543 3444444332 222 1111110 01111
Q ss_pred ceeeeecCCCCccccccccccc-ccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEe
Q 015303 74 SIVATPTISGKPSSERSLKVQG-KYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILK 150 (409)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 150 (409)
...+... .+. ..+++.... .......+.+.|..|+++|.+.+ .+++++.+++|+++..+++.+.+...++.+++
T Consensus 76 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~ 152 (428)
T PRK10157 76 KLAFMTE-KSA--MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIE 152 (428)
T ss_pred eEEEEcC-CCc--eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEE
Confidence 1222211 111 112221111 01122356789999999998876 47899999999999887777655556677899
Q ss_pred ccEEEecCCCchHHHhhhCCCCCcccceeeEEE--eecCCCCC--------CCCCceeeeec---CCc--EEEEEecCCC
Q 015303 151 TKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRG--YSDFKGSH--------GFEPNFLQFFG---KGL--RSGFIPCDDQ 215 (409)
Q Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~---~~~--~~~~~p~~~~ 215 (409)
||+||+|||.+|.+++.++...+......++.. ....+... ........+.+ .+. ..++++. ++
T Consensus 153 A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~ 231 (428)
T PRK10157 153 AKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-EN 231 (428)
T ss_pred CCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CC
Confidence 999999999999999998876443333333211 11121100 00111122221 110 1133343 33
Q ss_pred eEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEe--ecccccCcccccccccCCCcEEEec
Q 015303 216 TIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIIS--SRLQYRQPQEVLWGNISRGSVCVAG 293 (409)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~lvG 293 (409)
.....+....... .....++.++. +.+.. .+.+...+......+... .|..... ..++...+++++||
T Consensus 232 ~~svG~~~~~~~~-~~~~~~~~~~l----~~~~~-~p~v~~~~~~~~~~~~~~~~ip~~g~~----~~~~~~~~g~llvG 301 (428)
T PRK10157 232 TLSLGLVCGLHHL-HDAKKSVPQML----EDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGIN----MLPELVGDGVLIAG 301 (428)
T ss_pred eEEEEEEEehHHh-cccCCCHHHHH----HHHHh-CchHHHHhCCCeEHHHHhhHhhcCCcc----cCCceecCCeEEEe
Confidence 3333332222211 11223333333 33322 344444443322111111 1111000 11245679999999
Q ss_pred cCcCCCCC--CcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhee
Q 015303 294 DALHPMTP--DIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSI 371 (409)
Q Consensus 294 DAA~~~~P--~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~ 371 (409)
|||++++| ++|+||+.||.++..+|+.+.++++.+ +.....|..|++..+..+-.-....+.+..+
T Consensus 302 DAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~------------~~s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~ 369 (428)
T PRK10157 302 DAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD------------DFSKQKLAEYRQHLESGPLRDMRMYQKLPAF 369 (428)
T ss_pred cccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC------------CcchhhHHHHHHHHHHhHHHHHHHHhccHHH
Confidence 99999998 599999999999999999999998764 2456789999887766653433444334444
Q ss_pred ec
Q 015303 372 QQ 373 (409)
Q Consensus 372 ~~ 373 (409)
+.
T Consensus 370 ~~ 371 (428)
T PRK10157 370 LD 371 (428)
T ss_pred hc
Confidence 43
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.97 E-value=1.1e-28 Score=232.30 Aligned_cols=304 Identities=19% Similarity=0.210 Sum_probs=184.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCCc
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKP 85 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 85 (409)
||+||||||||+++|+.|++.|++|+|+|+.+.... .....+++. .++.+++.+.+. ..+.....+......
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~- 72 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVE---HVWPDVYEYRFPKQP- 72 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHh---hcCCCceEEecCCcc-
Confidence 899999999999999999999999999999865321 223334432 234444322221 122221111111111
Q ss_pred ccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEe-CCeEEEEecCCcEEeccEEEecCCCch
Q 015303 86 SSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
... ...+..+++..|.+.|.+.+. +++++ .++|+.+..+ ++.+.|++.+|.+++|++||+|||.+|
T Consensus 73 ---~~~-------~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 73 ---RKL-------GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ---hhc-------CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 001 233446899999999988663 56664 6688888877 566888888888899999999999999
Q ss_pred HHHhhhCCCCCcccceeeEEEe-ecCCCCC-CCCC-ceeeee-c--------CCc--EEEEEecCCCeEEEEEEecCCCc
Q 015303 163 IVAKWLGFKNPAFVGRSAIRGY-SDFKGSH-GFEP-NFLQFF-G--------KGL--RSGFIPCDDQTIYWFFTWTSSSQ 228 (409)
Q Consensus 163 ~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~-~--------~~~--~~~~~p~~~~~~~~~~~~~~~~~ 228 (409)
.+++...... .+.....++ +....+. .... .++.+. . ... +++++|.+++++.+..+.....
T Consensus 142 ~~~~~~~~~~---~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~- 217 (388)
T TIGR01790 142 LVQYVRFPLN---VGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADR- 217 (388)
T ss_pred hcccccCCCC---ceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccCC-
Confidence 6654321111 111222333 2222111 1111 111111 1 122 7889999988764433221111
Q ss_pred CcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchh
Q 015303 229 DKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGC 308 (409)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~ 308 (409)
...+.+.+++.+.+.+........++++ .+....|+....+ ...+|+++||||||.++|++|+|++
T Consensus 218 ---~~~~~~~~~~~l~~~~~~~g~~~~~i~~----~~~~~iP~~~~~~-------~~~~rv~liGdAAg~~~P~tG~Gi~ 283 (388)
T TIGR01790 218 ---PALPRDRLRQRILARLNAQGWQIKTIEE----EEWGALPVGLPGP-------FLPQRVAAFGAAAGMVHPTTGYSVA 283 (388)
T ss_pred ---CCCCHHHHHHHHHHHHHHcCCeeeEEEe----eeeEEEecccCCC-------ccCCCeeeeechhcCcCCcccccHH
Confidence 2345566777777666543322211111 1222233322211 2578999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHH
Q 015303 309 AALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFE 360 (409)
Q Consensus 309 ~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~ 360 (409)
.|+.+|..+|+.|.+++.. ....+++.|++.++++...
T Consensus 284 ~al~~a~~la~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 284 RALSDAPGLAAAIAQALCQ--------------SSELATAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHHHHHHHHHHHhcc--------------CHHHHHHHHHHhchHHHHH
Confidence 9999999999999998764 2367788887666655554
No 57
>PLN02697 lycopene epsilon cyclase
Probab=99.97 E-value=4.6e-28 Score=230.70 Aligned_cols=319 Identities=17% Similarity=0.226 Sum_probs=199.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+||+||||||||+++|..|++.|++|+|+|+..... +..+++. ..++.+|+.+.+.. .+....++.. .+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~---~n~GvW~---~~l~~lgl~~~i~~---~w~~~~v~~~-~~ 177 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWE---DEFKDLGLEDCIEH---VWRDTIVYLD-DD 177 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC---Cccccch---hHHHhcCcHHHHHh---hcCCcEEEec-CC
Confidence 5899999999999999999999999999999863322 2233443 45677787554432 2333333322 11
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCC
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGV 160 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~ 160 (409)
... .. ...+..++|..|.+.|++++. ++++ .+++|+.+..+++.+. +++.+|.+++|++||+|||.
T Consensus 178 ~~~---~~-------~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~ 246 (529)
T PLN02697 178 KPI---MI-------GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGA 246 (529)
T ss_pred cee---ec-------cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCc
Confidence 111 01 122336899999999988763 6776 6789999988776654 45677888999999999999
Q ss_pred chHHHhhhCCC--CCcccceeeEEEeecCCCCCCCCCceeeeec---------------CCcEEEEEecCCCeEEEEEEe
Q 015303 161 NSIVAKWLGFK--NPAFVGRSAIRGYSDFKGSHGFEPNFLQFFG---------------KGLRSGFIPCDDQTIYWFFTW 223 (409)
Q Consensus 161 ~S~vr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~~~ 223 (409)
+|. +.++.. .+....+.++........+ +++.....+++ ...++|++|.+++++..--++
T Consensus 247 ~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~-~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~ 323 (529)
T PLN02697 247 ASG--RLLQYEVGGPRVCVQTAYGVEVEVENN-PYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETC 323 (529)
T ss_pred Chh--hhhccccCCCCcccEEEEEEEEEecCC-CCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEee
Confidence 993 333322 1222233443333333322 22223233332 124788999999987664444
Q ss_pred cCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCc
Q 015303 224 TSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDI 303 (409)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~ 303 (409)
..... ..+.+.+++.+.+++...+....+++ ..+....|+....| . ..++++++||||+.++|.|
T Consensus 324 l~~~~----~l~~~~l~~~L~~~l~~~Gi~~~~i~----~~E~g~iPm~g~~~------~-~~~~vl~vG~AAG~vhPsT 388 (529)
T PLN02697 324 LASKD----AMPFDLLKKRLMSRLETMGIRILKTY----EEEWSYIPVGGSLP------N-TEQKNLAFGAAASMVHPAT 388 (529)
T ss_pred eccCC----CCCHHHHHHHHHHHHHhCCCCcceEE----EEEeeeecCCCCCc------c-cCCCeeEeehhhcCCCCch
Confidence 32221 33456677777777664432211111 12223344432211 2 2678999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 015303 304 GQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISI 364 (409)
Q Consensus 304 g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~ 364 (409)
|.|+..++.+|..+|+.|.++++..+... .....+.....++.|++.+..........
T Consensus 389 Gy~v~~~l~~A~~~A~~ia~~l~~~~~~~---~~~~~~~~~~~l~~~~~lw~~e~~r~~~~ 446 (529)
T PLN02697 389 GYSVVRSLSEAPKYASVIARILKNVSSGG---KLGTSNSSNISMQAWNTLWPQERKRQRAF 446 (529)
T ss_pred hhhHHHHHHhHHHHHHHHHHHhhCCcccc---ccccccchHHHHHHHHHhChHHHHHHHHH
Confidence 99999999999999999999998542000 00001356788999988887765544433
No 58
>PLN02463 lycopene beta cyclase
Probab=99.97 E-value=1.3e-27 Score=224.52 Aligned_cols=287 Identities=18% Similarity=0.236 Sum_probs=183.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+||+||||||||+++|..|++.|++|+|+|+.+.... .++..++ ...++.+|+.+.+... +....++.....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~w---~~~l~~lgl~~~l~~~---w~~~~v~~~~~~ 100 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGVW---VDEFEALGLLDCLDTT---WPGAVVYIDDGK 100 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccchH---HHHHHHCCcHHHHHhh---CCCcEEEEeCCC
Confidence 58999999999999999999999999999999764221 1122222 3567788887666432 222222211111
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.. .. ...+..++|..|.+.|.+++. +++++ .++|++++..++.+.|++++|.+++||+||+|||.+
T Consensus 101 ~~--~~---------~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 101 KK--DL---------DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred Cc--cc---------cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 10 00 123346899999999988763 57775 579999999888899999999899999999999999
Q ss_pred hHHHhhhCCCCCcccceeeEEEe-ecCCCCCCCCCceeeee-------c---------C--CcEEEEEecCCCeEEEEEE
Q 015303 162 SIVAKWLGFKNPAFVGRSAIRGY-SDFKGSHGFEPNFLQFF-------G---------K--GLRSGFIPCDDQTIYWFFT 222 (409)
Q Consensus 162 S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~---------~--~~~~~~~p~~~~~~~~~~~ 222 (409)
|.+++. ..+...+.....+. ..... +++......++ + . -.+++++|.++++++.-.+
T Consensus 169 s~l~~~---~~~~~~g~Q~a~Gi~~ev~~-~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT 244 (447)
T PLN02463 169 RCLVQY---DKPFNPGYQVAYGILAEVDS-HPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEET 244 (447)
T ss_pred cCccCC---CCCCCccceeeeeEEeecCC-CCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEee
Confidence 987643 22222333333333 22222 11122111111 1 0 2378899999998654443
Q ss_pred ecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCC
Q 015303 223 WTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPD 302 (409)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~ 302 (409)
..... ...+.+.+++.+.++++..+....++. ..+....|+....| ...++++++||||+.++|.
T Consensus 245 ~l~s~----~~~~~~~lk~~L~~~l~~~Gi~~~~i~----~~E~~~IPmg~~~~-------~~~~~~~~~G~aag~v~p~ 309 (447)
T PLN02463 245 SLVAR----PGLPMDDIQERMVARLRHLGIKVKSVE----EDEKCVIPMGGPLP-------VIPQRVLGIGGTAGMVHPS 309 (447)
T ss_pred eeecC----CCCCHHHHHHHHHHHHHHCCCCcceee----eeeeeEeeCCCCCC-------CCCCCEEEecchhcCcCCC
Confidence 21111 123455666777766653332211111 12222334432222 2357899999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhcc
Q 015303 303 IGQGGCAALEDGIVLARCINEALKTK 328 (409)
Q Consensus 303 ~g~G~~~al~~a~~la~~l~~~~~~~ 328 (409)
+|.|+..++..|..+|+.|.++++.+
T Consensus 310 tG~~i~~~~~~~~~~a~~~~~~~~~~ 335 (447)
T PLN02463 310 TGYMVARTLAAAPIVADAIVEYLGSS 335 (447)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999854
No 59
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.95 E-value=3e-26 Score=211.92 Aligned_cols=304 Identities=16% Similarity=0.119 Sum_probs=177.8
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
||+|||||+||+++|..|++. |++|+|+|+.+..... ...+++.....-...- ..+.+ ....+....+.....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~~~~~~~~~~~-~~~~~--v~~~W~~~~v~~~~~- 75 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFFDSDLSDAQHA-WLADL--VQTDWPGYEVRFPKY- 75 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceecccccchhhhh-hhhhh--heEeCCCCEEECcch-
Confidence 899999999999999999987 9999999998643321 2222222111100000 00111 122333333332110
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
. ..+ ...+..|.+.+|.+.+.+.+... ++++++|+.+ +++++++ .+|.+++||+||+|+|.+|.
T Consensus 76 ~--~~l---------~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 76 R--RKL---------KTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPS 139 (370)
T ss_pred h--hhc---------CCCceEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCC
Confidence 0 011 13456899999999998877433 8889999988 3445544 78889999999999998874
Q ss_pred HHhhhCCCCCcccceeeEEEeec-CCCCCCCC-Cceeeee---cC-CcEEEEEecCCCeEEEEEEecCCCcCcccccChH
Q 015303 164 VAKWLGFKNPAFVGRSAIRGYSD-FKGSHGFE-PNFLQFF---GK-GLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSA 237 (409)
Q Consensus 164 vr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~---~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
-.. +.+.+.+.|+.- ...++... ...+-+. .. ..+++++|.+++++++-.++..+.. ..+.+
T Consensus 140 ~~~--------~~~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~~----~l~~~ 207 (370)
T TIGR01789 140 AHL--------KGGFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADDP----LLDRN 207 (370)
T ss_pred ccc--------cceeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCCC----CCCHH
Confidence 111 123344444422 22222211 1122122 22 3466679999999988766655422 44556
Q ss_pred HHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHH
Q 015303 238 ELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVL 317 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~l 317 (409)
.+.+.+.+++...+....+++. .+....|+....+.. ......++++++|||||.++|.+|+|++.++++|..|
T Consensus 208 ~l~~~l~~~~~~~g~~~~~i~~----~e~g~iPm~~~~~~~--~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~l 281 (370)
T TIGR01789 208 ALSQRIDQYARANGWQNGTPVR----HEQGVLPVLLGGDFS--AYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADAL 281 (370)
T ss_pred HHHHHHHHHHHHhCCCceEEEE----eeeeEEeeecCCCcc--cccccCCceeeeecccccccccccccHHHHHHHHHHH
Confidence 6666666655432322222111 111233332211000 0001246699999999999999999999999999999
Q ss_pred HHHHH-HHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 015303 318 ARCIN-EALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISI 364 (409)
Q Consensus 318 a~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~ 364 (409)
++.+. + + .....++..|...|+++.......
T Consensus 282 a~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 313 (370)
T TIGR01789 282 AAQPDLS---S-------------EQLAAFIDSRARRHWSKTGYYRLL 313 (370)
T ss_pred HhccCcC---c-------------cchhhhhhHHHHHHHHHhHHHHHH
Confidence 99885 2 1 133455678877766666544433
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.95 E-value=1e-25 Score=213.14 Aligned_cols=323 Identities=18% Similarity=0.147 Sum_probs=192.5
Q ss_pred cEEEECCChHHHHHHHHHHHcC---CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhH--HHhcc-ccccceeeee
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNS--LRQQH-QQLRSIVATP 79 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~-~~~~~~~~~~ 79 (409)
||+|||||+||.++|..|++.+ ++|+|||+...++. +-|....|....+++.+|+.+. +.+.. ....++.+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~-~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRI-GVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCC-CccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 7999999999999999999998 89999999877654 4577888888889999999866 44332 2233444432
Q ss_pred cCCCCccccccccc-------------------------------------------cc---ccCCccceeccHHHHHHH
Q 015303 80 TISGKPSSERSLKV-------------------------------------------QG---KYGEHEMRCVRRKLLLET 113 (409)
Q Consensus 80 ~~~~~~~~~~~~~~-------------------------------------------~~---~~~~~~~~~i~r~~l~~~ 113 (409)
+.........+|.. .. .......+.++|..|++.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 22110000001100 00 011234568999999999
Q ss_pred HHhhC--CCceEEeCCeEEEEEEeCCe--EEEEecCCcEEeccEEEecCCCchHHHhh-hCCCCCcccce----eeEEEe
Q 015303 114 LAKEL--PSGTIRYSSQVVSIEESGHF--KLLHLADGTILKTKVLIGCDGVNSIVAKW-LGFKNPAFVGR----SAIRGY 184 (409)
Q Consensus 114 L~~~~--~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~vr~~-l~~~~~~~~~~----~~~~~~ 184 (409)
|++.+ .|++++.++ |+++..++++ ..|++.+|.+++||++|+|+|..|.+.+. ++.+....... .++...
T Consensus 160 L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~ 238 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQ 238 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEE
T ss_pred HHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEe
Confidence 99876 578998885 7777766554 46888899999999999999999988666 33332222111 222222
Q ss_pred ecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCC
Q 015303 185 SDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLD 264 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (409)
..... ...+.......+.+|+|.+|+.++... .+.+..... ++++..+.+.+.+...... .
T Consensus 239 ~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~~~A~~~l~~~l~~~~~~----------~ 299 (454)
T PF04820_consen 239 VPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SDDEAEAELLAYLGGSPEA----------E 299 (454)
T ss_dssp EE-SS--CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HHHHHHHHHHHHHTCHCTT----------S
T ss_pred cCcCC--CCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CHHHHHHHHHHhcchhhhc----------c
Confidence 22222 223333344456668999999998765 444444322 3334444555544321110 0
Q ss_pred ceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHH
Q 015303 265 SIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVE 344 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (409)
. ...+.... ...+...+++++|||||++++|+.+.|+.+++..+..+++.|.... ..+
T Consensus 300 ~-~~i~~~~g-----~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~----------------~~~ 357 (454)
T PF04820_consen 300 P-RHIRFRSG-----RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD----------------FSP 357 (454)
T ss_dssp C-EEEE-S-E-----EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT----------------CCH
T ss_pred h-hhhccccc-----chhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC----------------CCH
Confidence 0 11111111 1224456889999999999999999999999998777777776521 226
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhee
Q 015303 345 MGLKRYAKERRWRCFELISIAYLVGSI 371 (409)
Q Consensus 345 ~~l~~Y~~~r~~~~~~~~~~s~~~~~~ 371 (409)
.+++.|++..+...+.+.+.....+.+
T Consensus 358 ~~~~~Yn~~~~~~~~~~~~fi~~hY~~ 384 (454)
T PF04820_consen 358 AALDRYNRRMRREYERIRDFISLHYQL 384 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 788999999988888887777666665
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.93 E-value=6.2e-24 Score=197.50 Aligned_cols=277 Identities=21% Similarity=0.224 Sum_probs=182.0
Q ss_pred cEEEECCChHHHHHHHHH--HHcCCceEEEeCCCCc-CCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 6 DIVIVGAGIAGLTTSLGL--YRLGIRSMVLESSESL-RVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L--~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
||+||||||||+++|+.| ++.|.+|+|+|+++.. ....+..+++...... .+.+.. ..+....+.....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~------~~~~v~--~~w~~~~v~~~~~ 72 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP------LDSLVS--HRWSGWRVYFPDG 72 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc------hHHHHh--eecCceEEEeCCC
Confidence 899999999999999999 7889999999998765 1222344443322211 222222 2234444443222
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhCC-CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
... .. .+.+.+|++..|.+.|.+++. +..+..+++|++|+..++.+.+++.+|.+++|++||+|+|..
T Consensus 73 ~~~-----~~------~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 73 SRI-----LI------DYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred ceE-----Ec------ccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 111 11 134558999999999999875 456788999999999999899999999999999999999976
Q ss_pred hHHHhhhCCCCCcccceeeEEEe-ecCCCCCCCCCc---eeeee-c----CCcEEEEEecCCCeEEEEEEecCCCcCccc
Q 015303 162 SIVAKWLGFKNPAFVGRSAIRGY-SDFKGSHGFEPN---FLQFF-G----KGLRSGFIPCDDQTIYWFFTWTSSSQDKEL 232 (409)
Q Consensus 162 S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~-~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
+...+ ....+.+.|+ +....+ .+... ++-|. . .-.+++++|.+++++..-.++..+..
T Consensus 142 ~~~~~--------~~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~---- 208 (374)
T PF05834_consen 142 SPKAR--------PLGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPRP---- 208 (374)
T ss_pred ccccc--------ccccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCC----
Confidence 65111 1122233443 333332 12222 22222 1 23588899999999877766665532
Q ss_pred ccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchhhhhh
Q 015303 233 EDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~ 312 (409)
..+.+.+++.+.+++...+....++++ .+....|+....+. ....++++.+|+|++.++|.||.++..++.
T Consensus 209 ~~~~~~~~~~l~~~l~~~g~~~~~i~~----~E~G~IPm~~~~~~-----~~~~~~v~~iG~agG~v~PsTGYs~~~~~~ 279 (374)
T PF05834_consen 209 ALPEEELKARLRRYLERLGIDDYEILE----EERGVIPMTTGGFP-----PRFGQRVIRIGTAGGMVKPSTGYSFARIQR 279 (374)
T ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEE----eecceeecccCCCc-----cccCCCeeeEEccccCCCCcccHHHHHHHH
Confidence 355667777777777654443333222 22334555322222 224567999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015303 313 DGIVLARCINE 323 (409)
Q Consensus 313 ~a~~la~~l~~ 323 (409)
.|..+|+.|.+
T Consensus 280 ~a~~ia~~l~~ 290 (374)
T PF05834_consen 280 QADAIADALAK 290 (374)
T ss_pred HHHHHHHHHhh
Confidence 99988888876
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.90 E-value=9.3e-22 Score=167.99 Aligned_cols=237 Identities=19% Similarity=0.138 Sum_probs=180.3
Q ss_pred ccEEEecCCCchHHHhhhCCCCCcccceeeEEEeecCCCCCCCCCceeeeecCCcEEEEEecCCCeEEEEEEecCCCcCc
Q 015303 151 TKVLIGCDGVNSIVAKWLGFKNPAFVGRSAIRGYSDFKGSHGFEPNFLQFFGKGLRSGFIPCDDQTIYWFFTWTSSSQDK 230 (409)
Q Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (409)
|.++|+|||..|.+|+.+....+ .....+.|..-.....+.+..-++++++...+.+++++.+.....+-+..+..+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~--~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P- 78 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKP--QVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP- 78 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCC--ceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC-
Confidence 78999999999999999984433 344556666665555555667788888888999999999988777766655332
Q ss_pred ccccChHHHHHHHHHHhC-CCChHHHHHHHc-CCCCceEeecccccCcccccccccCCCcEEEeccCcCCCCCCcccchh
Q 015303 231 ELEDHSAELKQFVLGKLH-DLPAQVKAVIEK-TPLDSIISSRLQYRQPQEVLWGNISRGSVCVAGDALHPMTPDIGQGGC 308 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~ 308 (409)
..+.+++++.+++.+. .+++.+++.+.. .+...+...|..+.++. ....++++++|||+++.||+||+||+
T Consensus 79 --~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~-----~~~~~G~vllGDA~nmrHPLTGgGMT 151 (276)
T PF08491_consen 79 --SVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPAS-----PNWKPGVVLLGDAANMRHPLTGGGMT 151 (276)
T ss_pred --CccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCC-----CCCCCCEEEEehhhcCcCCccccchh
Confidence 2345677888887766 677777665443 33344555555554443 34568899999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHhheeeccCchhHHHHHHHHHH
Q 015303 309 AALEDGIVLARCINEALKTKQGVGEEDEEEFNKRVEMGLKRYAKERRWRCFELISIAYLVGSIQQSDGKILNFLRDKILA 388 (409)
Q Consensus 309 ~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 388 (409)
.|+.|+..|++.|... . +..+.+.+.++++.|+.+|++....+.-++..++.+|...++....+|+..|.
T Consensus 152 VAl~Dv~lL~~lL~~~---~-------dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l~~Lr~gcf~ 221 (276)
T PF08491_consen 152 VALNDVVLLRDLLSPI---P-------DLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYLKALRQGCFK 221 (276)
T ss_pred hHHHHHHHHHHHHhhh---c-------CcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999886 1 12235678899999999999999999999999999999999999999999999
Q ss_pred HHhhh--hhcccccCCCCccc
Q 015303 389 SFLVG--LLLKKADFDCGNLT 407 (409)
Q Consensus 389 ~~~~~--~~~~~~~~~~g~~~ 407 (409)
++-.. .......++.|-.|
T Consensus 222 Yf~~GG~~~~gpv~LLsgl~p 242 (276)
T PF08491_consen 222 YFQLGGECVSGPVALLSGLNP 242 (276)
T ss_pred HHHcCCCCCcchHHHhccCCC
Confidence 86544 33455566666544
No 63
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.65 E-value=1.7e-15 Score=134.64 Aligned_cols=157 Identities=22% Similarity=0.229 Sum_probs=104.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc-------ccceeccccHHHHHHHcCchhHH----Hhccc
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT-------GFAFTVWTNAWKALDAVGIGNSL----RQQHQ 70 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~----~~~~~ 70 (409)
|+.+||+|||||||||++|..++++|.+|+|||+.+.+.++ .|++.-.....+++.+..-...+ .....
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 34689999999999999999999999999999999876433 23333333334444444311111 11111
Q ss_pred cc--------cceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE
Q 015303 71 QL--------RSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL 140 (409)
Q Consensus 71 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~ 140 (409)
+. .++.++....|.. ++ ....-+.+.+.|+.++ .+++++.+++|.++..++....
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~---Fp------------~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~ 145 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRM---FP------------DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFR 145 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCcee---cC------------CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEE
Confidence 11 1233332222221 00 0133466777777765 4799999999999999998999
Q ss_pred EEecCCcEEeccEEEecCCCchH-----------HHhhhCCCCC
Q 015303 141 LHLADGTILKTKVLIGCDGVNSI-----------VAKWLGFKNP 173 (409)
Q Consensus 141 v~~~~g~~~~ad~vV~AdG~~S~-----------vr~~l~~~~~ 173 (409)
+.+.+|++++||.+|.|+|..|. +.+++|.+..
T Consensus 146 l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~ 189 (408)
T COG2081 146 LDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTIT 189 (408)
T ss_pred EEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccc
Confidence 99999989999999999996654 4666665533
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.60 E-value=1.2e-14 Score=127.32 Aligned_cols=135 Identities=22% Similarity=0.233 Sum_probs=90.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccc--ce-----eccccHHHHHHHcCchhHHHhcccccccee
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF--AF-----TVWTNAWKALDAVGIGNSLRQQHQQLRSIV 76 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~--~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
.+||+||||||||+++|+.|++.|++|+|+|+...+...-+ +. .+.......|+++|+. +
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~---------~---- 91 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR---------Y---- 91 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC---------c----
Confidence 58999999999999999999999999999999876532111 11 1111222333333321 0
Q ss_pred eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC-eEE-EEec--------
Q 015303 77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FKL-LHLA-------- 144 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~-v~~~-------- 144 (409)
... ....+.+++..+...|.+.+ .+++++++++|+++..+++ ++. +...
T Consensus 92 -~~~------------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g 152 (257)
T PRK04176 92 -KEV------------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG 152 (257)
T ss_pred -eee------------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC
Confidence 000 01123567888888888765 4789999999999986554 322 2211
Q ss_pred ---CCcEEeccEEEecCCCchHHHhhhCC
Q 015303 145 ---DGTILKTKVLIGCDGVNSIVAKWLGF 170 (409)
Q Consensus 145 ---~g~~~~ad~vV~AdG~~S~vr~~l~~ 170 (409)
+..+++|++||+|+|.+|.+.+.+..
T Consensus 153 ~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~ 181 (257)
T PRK04176 153 LHVDPLTIEAKAVVDATGHDAEVVSVLAR 181 (257)
T ss_pred CCCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence 22479999999999999999887743
No 65
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.58 E-value=5.9e-14 Score=122.48 Aligned_cols=133 Identities=22% Similarity=0.253 Sum_probs=88.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccccee-------ccccHHHHHHHcCchhHHHhcccccccee
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT-------VWTNAWKALDAVGIGNSLRQQHQQLRSIV 76 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~-------~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
.+||+||||||+|+++|+.|++.|++|+|+||+..+....++.. +.....++++.+|+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~-------------- 86 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR-------------- 86 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC--------------
Confidence 58999999999999999999999999999999977532211110 111112222222211
Q ss_pred eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC--eE-EEEec-------
Q 015303 77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH--FK-LLHLA------- 144 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~--~v-~v~~~------- 144 (409)
+... ....+..++..+.+.|.+++ .+++++++++|+++..+++ ++ -|...
T Consensus 87 --------------~~~~----~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~ 148 (254)
T TIGR00292 87 --------------YEDE----GDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELA 148 (254)
T ss_pred --------------eeec----cCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccccc
Confidence 0000 01123456778888887755 3689999999999987766 22 22221
Q ss_pred ----CCcEEeccEEEecCCCchHHHhhh
Q 015303 145 ----DGTILKTKVLIGCDGVNSIVAKWL 168 (409)
Q Consensus 145 ----~g~~~~ad~vV~AdG~~S~vr~~l 168 (409)
+..+++|++||+|+|..|.+.+.+
T Consensus 149 g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 149 GLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 224789999999999999887776
No 66
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.58 E-value=5.4e-13 Score=125.27 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=47.1
Q ss_pred eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
.++...+...+.+.+ .+++++++++|+++..+++.+.|++.++ +++||.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 455566666555443 4789999999999998888888888877 6999999999999864
No 67
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.57 E-value=1.5e-12 Score=122.36 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=54.2
Q ss_pred eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc-hHHHhhhCCCCC
Q 015303 104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN-SIVAKWLGFKNP 173 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~-S~vr~~l~~~~~ 173 (409)
.++...+.+.|.+.+ .+++++++++|++++.+++.+.|.+.++ ++++|.||.|+|.+ +.+++.++...+
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIP 212 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCC
Confidence 566677777776654 4789999999999998888888887766 69999999999987 567777765544
No 68
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.54 E-value=1.8e-13 Score=127.54 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=54.3
Q ss_pred ceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHH-HhhhCCC
Q 015303 102 MRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV-AKWLGFK 171 (409)
Q Consensus 102 ~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~ 171 (409)
...++...+.+.|.+.+ .|++++.+++|++|..++++|+ |.+.+|+ ++||.||.|+|.++.. .+.++..
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~ 213 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLD 213 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTS
T ss_pred cccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccccc
Confidence 34577888888888765 4799999999999999999988 9999998 9999999999998865 3344443
No 69
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.54 E-value=8.1e-12 Score=110.84 Aligned_cols=304 Identities=15% Similarity=0.096 Sum_probs=167.8
Q ss_pred cccEEEECCChHHHHHHHHHHH------cCCceEEEeCCCCcCCcc-cceeccccHHHHHHHcCchhHHHhccccc----
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYR------LGIRSMVLESSESLRVTG-FAFTVWTNAWKALDAVGIGNSLRQQHQQL---- 72 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~------~g~~V~v~E~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~---- 72 (409)
.+||+|||||||||++|+.|.+ ..++|.|+||...+..+. .|-.+.|.++. ++ + ....+.+.+.
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~ald---EL-~-P~wke~~apl~t~v 150 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALD---EL-L-PDWKEDGAPLNTPV 150 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhh---hh-C-cchhhcCCcccccc
Confidence 5899999999999999999976 347999999998865332 34445553333 22 1 1122222221
Q ss_pred --cceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCe-E-EEEe---
Q 015303 73 --RSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHF-K-LLHL--- 143 (409)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~-v-~v~~--- 143 (409)
+.+.+.- ++. .++.+......+...++++-..|.++|-+.+. +++|+-+..+..+-.++++ | -|.+
T Consensus 151 T~d~~~fLt---~~~--~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~ 225 (621)
T KOG2415|consen 151 TSDKFKFLT---GKG--RISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDV 225 (621)
T ss_pred cccceeeec---cCc--eeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccc
Confidence 1222221 111 12222211112334568888999999987663 5677776666655444322 2 2222
Q ss_pred ------------cCCcEEeccEEEecCCCchHHHhhh----CCCCCcccceeeEEEeecC----CCCCCCCCceeee---
Q 015303 144 ------------ADGTILKTKVLIGCDGVNSIVAKWL----GFKNPAFVGRSAIRGYSDF----KGSHGFEPNFLQF--- 200 (409)
Q Consensus 144 ------------~~g~~~~ad~vV~AdG~~S~vr~~l----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--- 200 (409)
+.|-.+.|+.-|-|.|.+..+.+++ +.+.. ...+.+-.+..+. +..+. +....+-
T Consensus 226 GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n-~e~qtYglGlKEvWei~~~~~~-pG~v~HT~Gw 303 (621)
T KOG2415|consen 226 GISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLREN-CEPQTYGLGLKEVWEIDPENHN-PGEVAHTLGW 303 (621)
T ss_pred cccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccC-CCcceeccccceeEecChhhcC-CcceeeeccC
Confidence 2334688999999999998887765 33321 2233333333221 11111 1111111
Q ss_pred -ecCC--cEEEEEecCCCeEEEEEEecCCCcCcccccChHHHHHHHHHHhCCCChHHHHHHHcCCCCceEeecccccCcc
Q 015303 201 -FGKG--LRSGFIPCDDQTIYWFFTWTSSSQDKELEDHSAELKQFVLGKLHDLPAQVKAVIEKTPLDSIISSRLQYRQPQ 277 (409)
Q Consensus 201 -~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (409)
+.+. +-..++.+++..+...+....+-.. -..++ ..++++. +.+|.+..+++...........+-..- .
T Consensus 304 Pl~~~tYGGsFlYh~~d~~VavGlVVgLdY~N--P~lsP---~~EFQk~--K~hP~i~~vleGgk~i~YgARaLNEGG-f 375 (621)
T KOG2415|consen 304 PLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKN--PYLSP---YKEFQKM--KHHPSISKVLEGGKRIAYGARALNEGG-F 375 (621)
T ss_pred cccCCccCceeEEEcCCCeEEEEEEEEecCCC--CCCCH---HHHHHHh--hcCcchhhhhcCcceeeehhhhhccCC-c
Confidence 1111 1134677788766544443322111 12233 3444443 567778887775422111000000000 0
Q ss_pred cccccccCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhcc
Q 015303 278 EVLWGNISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTK 328 (409)
Q Consensus 278 ~~~~~~~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~ 328 (409)
+ ..+....++=+|||=+|++++=---.|-..||.++..+|+.|-+++.+.
T Consensus 376 Q-siPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~ 425 (621)
T KOG2415|consen 376 Q-SIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGL 425 (621)
T ss_pred c-cCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcC
Confidence 0 0112344556799999999999899999999999999999999998753
No 70
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.54 E-value=1.3e-12 Score=126.38 Aligned_cols=163 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCc---hhHH------Hhcc-
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGI---GNSL------RQQH- 69 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl---~~~~------~~~~- 69 (409)
|++.+||+|||||++|+++|+.|+++|++|+|+||++... ..+++..+-..+.++++...+ .+.+ ....
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p 82 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAP 82 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCC
Confidence 5567999999999999999999999999999999986532 122222233233333322110 0000 0000
Q ss_pred ---c------ccc-----------ceeeeecCCC-Ccc---cccccc------ccccc----CCccceeccHHHHHHHHH
Q 015303 70 ---Q------QLR-----------SIVATPTISG-KPS---SERSLK------VQGKY----GEHEMRCVRRKLLLETLA 115 (409)
Q Consensus 70 ---~------~~~-----------~~~~~~~~~~-~~~---~~~~~~------~~~~~----~~~~~~~i~r~~l~~~L~ 115 (409)
. +.. +..+++.... ..+ ..+.+. ..... ..+....++...|...+.
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~ 162 (508)
T PRK12266 83 HIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNA 162 (508)
T ss_pred CcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHH
Confidence 0 000 0000000000 000 000000 00000 011112355566655555
Q ss_pred hhC--CCceEEeCCeEEEEEEeCCeEEEEecC---Cc--EEeccEEEecCCCchH
Q 015303 116 KEL--PSGTIRYSSQVVSIEESGHFKLLHLAD---GT--ILKTKVLIGCDGVNSI 163 (409)
Q Consensus 116 ~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~--~~~ad~vV~AdG~~S~ 163 (409)
..+ .+++++.+++|+++..+++.+.+++.+ |+ +++|+.||.|+|.|+.
T Consensus 163 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 163 RDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 433 478999999999998887777777654 43 6899999999999985
No 71
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.53 E-value=2.6e-13 Score=111.18 Aligned_cols=129 Identities=25% Similarity=0.226 Sum_probs=81.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccc-c------eeccccHHHHHHHcCchhHHHhcccccccee
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF-A------FTVWTNAWKALDAVGIGNSLRQQHQQLRSIV 76 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~-~------~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
++||+||||||+||++|+.|++.|++|+|+|++..+...-+ | +.+...+..+|+++|+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~-------------- 82 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP-------------- 82 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT----------------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce--------------
Confidence 58999999999999999999999999999999987643221 1 23344455666666541
Q ss_pred eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeC-CeEEEEec---------
Q 015303 77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESG-HFKLLHLA--------- 144 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~v~~~--------- 144 (409)
+... ....+..+...+...|..++ ++++|+..+.|.++...+ +++.-..-
T Consensus 83 y~~~------------------~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~g 144 (230)
T PF01946_consen 83 YEEY------------------GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAG 144 (230)
T ss_dssp -EE-------------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-
T ss_pred eEEe------------------CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhh
Confidence 1100 11233456667777776654 689999999999987766 55432221
Q ss_pred ---CCcEEeccEEEecCCCchHH
Q 015303 145 ---DGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 145 ---~g~~~~ad~vV~AdG~~S~v 164 (409)
|..++++++||+|||..+.+
T Consensus 145 lHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 145 LHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp -T-B-EEEEESEEEE---SSSSS
T ss_pred cCCCcceEEEeEEEeCCCCchHH
Confidence 23479999999999998765
No 72
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.52 E-value=3.8e-12 Score=123.34 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=92.2
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCch---hH------HHhcc-
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGIG---NS------LRQQH- 69 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~---~~------~~~~~- 69 (409)
|+.++||+|||||++|+++|+.|+++|++|+|+||++... ..+++..+-..+.++++..++. +. +....
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap 82 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP 82 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC
Confidence 4456999999999999999999999999999999996542 1222222222233333332110 00 00000
Q ss_pred ccccceeee-ecCCCC-----------------------ccccccccc------cc----ccCCccceeccHHHHHHHHH
Q 015303 70 QQLRSIVAT-PTISGK-----------------------PSSERSLKV------QG----KYGEHEMRCVRRKLLLETLA 115 (409)
Q Consensus 70 ~~~~~~~~~-~~~~~~-----------------------~~~~~~~~~------~~----~~~~~~~~~i~r~~l~~~L~ 115 (409)
.......+. ...... ....++... .. ....+....++...+...+.
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~ 162 (502)
T PRK13369 83 HIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNA 162 (502)
T ss_pred ccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHH
Confidence 000000000 000000 000000000 00 00011122456677766665
Q ss_pred hhC--CCceEEeCCeEEEEEEeCCeEEEEecCC----cEEeccEEEecCCCchH
Q 015303 116 KEL--PSGTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGVNSI 163 (409)
Q Consensus 116 ~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~~~ad~vV~AdG~~S~ 163 (409)
..+ .+++++.+++|+++..+++.+.|++.++ .+++|++||.|+|.|+.
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 544 4789999999999998887777777664 26899999999999985
No 73
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.51 E-value=3.4e-12 Score=121.12 Aligned_cols=67 Identities=25% Similarity=0.287 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC-----cEEeccEEEecCCCchH-HHhhhCCC
Q 015303 105 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-----TILKTKVLIGCDGVNSI-VAKWLGFK 171 (409)
Q Consensus 105 i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-----~~~~ad~vV~AdG~~S~-vr~~l~~~ 171 (409)
++-..+...|.+.+ .+++++++++|++++.+++.+++.+.++ .+++||.||.|+|.+|. +.+.++..
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~ 268 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR 268 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence 34456666665554 3789999999999998888777655443 36899999999999975 34444543
No 74
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.50 E-value=9.9e-13 Score=106.96 Aligned_cols=132 Identities=22% Similarity=0.268 Sum_probs=89.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccc--ce-----eccccHHHHHHHcCchhHHHhccccccceee
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF--AF-----TVWTNAWKALDAVGIGNSLRQQHQQLRSIVA 77 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~--~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (409)
.||+||||||+||++|+.|+++|++|+|+||+-.+.-..+ |. .+...+.++|+.+|+. +
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~--------------y 96 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIR--------------Y 96 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCc--------------c
Confidence 5999999999999999999999999999999876532211 11 1223344555555442 1
Q ss_pred eecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC-eEEEEe-----------
Q 015303 78 TPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH-FKLLHL----------- 143 (409)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~v~~----------- 143 (409)
... ....+..+...+...|+.++ .+++|+.++.|.++...++ ++.-..
T Consensus 97 e~~------------------e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~l 158 (262)
T COG1635 97 EEE------------------EDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGL 158 (262)
T ss_pred eec------------------CCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhccc
Confidence 100 11233455566777776654 3689999999999876665 332211
Q ss_pred -cCCcEEeccEEEecCCCchHHHhhh
Q 015303 144 -ADGTILKTKVLIGCDGVNSIVAKWL 168 (409)
Q Consensus 144 -~~g~~~~ad~vV~AdG~~S~vr~~l 168 (409)
-|..++++++||+|||....+-+.+
T Consensus 159 hvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 159 HVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred ccCcceeeEEEEEeCCCCchHHHHHH
Confidence 1344789999999999987775554
No 75
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.49 E-value=3.1e-12 Score=128.17 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=51.8
Q ss_pred eccHHHHHHHHHhhCC-CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 104 CVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
.++...+.+.|.+.+. +++++++++|++++..++.+.|.+.++..++||.||.|+|.++.
T Consensus 404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 4677888888887764 58999999999999888889898888877889999999999985
No 76
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.49 E-value=1.7e-13 Score=127.35 Aligned_cols=138 Identities=21% Similarity=0.269 Sum_probs=73.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc----c---cceec---------------cccHHHHHHHcCch
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT----G---FAFTV---------------WTNAWKALDAVGIG 62 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~---~~~~~---------------~~~~~~~l~~~gl~ 62 (409)
|||+|||||||||+||+.|++.|.+|+|+||++.+..+ | |.+.- ..-....|++++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 79999999999999999999999999999999865221 1 11111 00112333333221
Q ss_pred h---HHHhccccccceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCC
Q 015303 63 N---SLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGH 137 (409)
Q Consensus 63 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~ 137 (409)
+ -+.+.+ +.......+.. ++ ..-.-..+.+.|.+++ .+++++++++|++|+.+++
T Consensus 81 d~~~ff~~~G-----v~~~~~~~gr~-----fP----------~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~ 140 (409)
T PF03486_consen 81 DLIAFFEELG-----VPTKIEEDGRV-----FP----------KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED 140 (409)
T ss_dssp HHHHHHHHTT-------EEE-STTEE-----EE----------TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT
T ss_pred HHHHHHHhcC-----CeEEEcCCCEE-----CC----------CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC
Confidence 1 111111 11111111111 00 0112355566665554 2799999999999998887
Q ss_pred e-EEEEecCCcEEeccEEEecCCCch
Q 015303 138 F-KLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 138 ~-v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
. +.|.++++.++.||.||.|+|..|
T Consensus 141 ~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 141 GVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EEEEEEETTTEEEEESEEEE----SS
T ss_pred ceeEeeccCcccccCCEEEEecCCCC
Confidence 7 888887777899999999999766
No 77
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.44 E-value=5.1e-11 Score=113.44 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=49.0
Q ss_pred eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHH-HhhhCCCC
Q 015303 104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV-AKWLGFKN 172 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~~ 172 (409)
.++...+.+.|.+.+ .+++|+++++|++++.+++.+. +++.++ +++||.||.|+|.++.- .+.++...
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~ 268 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDI 268 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCc
Confidence 345567777776554 4789999999999988777754 555544 69999999999999853 33344443
No 78
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.43 E-value=1.6e-11 Score=113.10 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=98.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcc---------cceeccccHH-------------HHHHH
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTG---------FAFTVWTNAW-------------KALDA 58 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~---------~~~~~~~~~~-------------~~l~~ 58 (409)
+++||+|||||+.|+++|+.|++.+ ++|+|+||...+.... .|+...|.+. ++-++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 9999999987652211 1222333211 11111
Q ss_pred cCc-----------------------hhHHHhccccccceeeeecCCCCcccc-ccccc---ccccCCccceeccHHHHH
Q 015303 59 VGI-----------------------GNSLRQQHQQLRSIVATPTISGKPSSE-RSLKV---QGKYGEHEMRCVRRKLLL 111 (409)
Q Consensus 59 ~gl-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~i~r~~l~ 111 (409)
+++ ++...+.+.. ..... +...+.. .+.-. .+-...+....++-..+.
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~--~~~~l---d~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t 156 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVF--DLEIL---DKEEIKELEPLLNEGAVAALLVPSGGIVDPGELT 156 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCc--ceeec---CHHHHHhhCccccccceeeEEcCCCceEcHHHHH
Confidence 110 0111111111 01110 0000000 00000 000112233356666777
Q ss_pred HHHHhhC--CCceEEeCCeEEEEEEeCC-eEEEEecCCcE-EeccEEEecCCCchH-HHhhhCCCC
Q 015303 112 ETLAKEL--PSGTIRYSSQVVSIEESGH-FKLLHLADGTI-LKTKVLIGCDGVNSI-VAKWLGFKN 172 (409)
Q Consensus 112 ~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~-~~ad~vV~AdG~~S~-vr~~l~~~~ 172 (409)
..|.+.+ .+++++++++|++|++.++ ...+.+.+|++ ++|++||.|.|..|- +.+..+.+.
T Consensus 157 ~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 157 RALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 6666654 4789999999999999888 57778888876 999999999999875 456666665
No 79
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.43 E-value=7.6e-11 Score=111.80 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=46.4
Q ss_pred eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe-CCe-EEEEecCCcEEeccEEEecCCCc-hHHHhhhCCCCC
Q 015303 104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES-GHF-KLLHLADGTILKTKVLIGCDGVN-SIVAKWLGFKNP 173 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~ad~vV~AdG~~-S~vr~~l~~~~~ 173 (409)
.++...+...|++.+ .+++++++++|++++.. ++. +.|++.+| ++.++.||.|.|.+ +.+++.++...+
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~ 252 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLP 252 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCC
Confidence 345556666565544 47899999999999754 344 45777777 58998766655555 567777766544
No 80
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.43 E-value=2e-12 Score=124.05 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=88.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC-CcCCcccceeccc----cHHHHHHHcC-chhHH-Hhcccccc
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-SLRVTGFAFTVWT----NAWKALDAVG-IGNSL-RQQHQQLR 73 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~----~~~~~l~~~g-l~~~~-~~~~~~~~ 73 (409)
|+.+|||+||||||||+.+|+.+++.|.+|+|+|++. .+...+|.-.+.. ...+.++.+| +.... ...+..
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq-- 78 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ-- 78 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc--
Confidence 5667999999999999999999999999999999874 2222223221211 1122333343 11111 111111
Q ss_pred ceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeE-EEEecCCcEE
Q 015303 74 SIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFK-LLHLADGTIL 149 (409)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v-~v~~~~g~~~ 149 (409)
........+.. . ......+++..+...+.+.+ ++++++ ..+|+++..+++.+ .|.+.+|..+
T Consensus 79 -~r~ln~skGpA---V---------~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I 144 (618)
T PRK05192 79 -FRMLNTSKGPA---V---------RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEF 144 (618)
T ss_pred -eeecccCCCCc---e---------eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEE
Confidence 11111001100 0 00112477777777776544 467774 56788887766664 4778888899
Q ss_pred eccEEEecCCCch
Q 015303 150 KTKVLIGCDGVNS 162 (409)
Q Consensus 150 ~ad~vV~AdG~~S 162 (409)
.|+.||+|+|.++
T Consensus 145 ~Ak~VIlATGTFL 157 (618)
T PRK05192 145 RAKAVVLTTGTFL 157 (618)
T ss_pred ECCEEEEeeCcch
Confidence 9999999999765
No 81
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.42 E-value=2.6e-11 Score=114.31 Aligned_cols=68 Identities=25% Similarity=0.442 Sum_probs=55.2
Q ss_pred eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH-HHhhhCCC
Q 015303 103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLGFK 171 (409)
Q Consensus 103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~~ 171 (409)
..++...+.+.|.+.+ .+++++++++|++++.+++.+.|.+.++ +++||.||.|+|.+|. +.+.++..
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 3567788888887665 3789999999999988888888888776 6999999999999984 56666654
No 82
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.39 E-value=1.8e-12 Score=110.65 Aligned_cols=136 Identities=20% Similarity=0.168 Sum_probs=72.4
Q ss_pred EEECCChHHHHHHHHHHHcCCc-eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCCcc
Q 015303 8 VIVGAGIAGLTTSLGLYRLGIR-SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKPS 86 (409)
Q Consensus 8 ~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (409)
+||||||+|+++|..|.+.|++ |+|+|+++.+...-. -.+.. ..+...........+. ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~---~~~~~----------~~~~~~~~~~~~~~~~------~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR---RYYSY----------TRLHSPSFFSSDFGLP------DF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH---CH-TT----------TT-BSSSCCTGGSS--------CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE---EeCCC----------CccccCccccccccCC------cc
Confidence 7999999999999999999999 999999876322110 00000 0000000000000000 00
Q ss_pred cccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 87 SERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
..+.+...+. .........+..+.++|.+.+ -+.+++++++|++++.++++|.|++.++.+++||.||.|+|..|.
T Consensus 62 ~~~~~~~~~~-~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 62 ESFSFDDSPE-WRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp CHSCHHHHHH-HHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred cccccccCCC-CCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 0011110000 000111255666666665543 256799999999999999999999999988999999999997553
No 83
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.39 E-value=2.6e-12 Score=122.18 Aligned_cols=151 Identities=16% Similarity=0.191 Sum_probs=87.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHh-ccccccceeeeec
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQ-QHQQLRSIVATPT 80 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~~ 80 (409)
++..+|+||||||+||++|..|++.|++|+|+|+++.. |..+.+.+.... +.+++...... ....+.....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v---GG~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~t--- 79 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV---GGLWVYTPKSES--DPLSLDPTRSIVHSSVYESLRT--- 79 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC---cceeecCCCcCC--CccccCCCCcccchhhhhhhhc---
Confidence 34689999999999999999999999999999998763 222222221100 00111100000 0000000000
Q ss_pred CCCCccccccccccccc------CCccceeccHHHHHHHHHhhCC--Cce--EEeCCeEEEEEEeCCeEEEEecCCc---
Q 015303 81 ISGKPSSERSLKVQGKY------GEHEMRCVRRKLLLETLAKELP--SGT--IRYSSQVVSIEESGHFKLLHLADGT--- 147 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~i~r~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~~~v~v~~~~g~--- 147 (409)
+.+...+.+...+.. .........+..+.++|.+.+. ++. |+++++|++++..++.|.|++.++.
T Consensus 80 --n~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~ 157 (461)
T PLN02172 80 --NLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFS 157 (461)
T ss_pred --cCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCce
Confidence 000001111110000 0001113456778888877653 444 8999999999988888999886432
Q ss_pred -EEeccEEEecCCCch
Q 015303 148 -ILKTKVLIGCDGVNS 162 (409)
Q Consensus 148 -~~~ad~vV~AdG~~S 162 (409)
+..+|.||.|+|..+
T Consensus 158 ~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 158 KDEIFDAVVVCNGHYT 173 (461)
T ss_pred EEEEcCEEEEeccCCC
Confidence 457999999999754
No 84
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.36 E-value=2.5e-11 Score=116.52 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=47.3
Q ss_pred eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
..++..++...|++.+ .+++|+.+++|++++. ++.+.|++.+| +++||.||.|+|.++.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 3567788888887655 4799999999999975 45577777777 5999999999999864
No 85
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.35 E-value=1.7e-09 Score=104.54 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=40.2
Q ss_pred HHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 113 TLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 113 ~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
.|.+.+.+++|+++++|+.|+.++++|+|++.+|++++||.||.|.-...
T Consensus 230 ~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 279 (462)
T TIGR00562 230 EIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKA 279 (462)
T ss_pred HHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHH
Confidence 33333433579999999999998888999988888899999999988653
No 86
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.34 E-value=6.2e-11 Score=99.68 Aligned_cols=141 Identities=23% Similarity=0.186 Sum_probs=82.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC-------cc-----cceeccccHHHHHHHcCchhHHHhccc--c
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV-------TG-----FAFTVWTNAWKALDAVGIGNSLRQQHQ--Q 71 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~-------~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~--~ 71 (409)
+|+|||+||+|+++|+.|+..|++|+|+||...... .+ .+..+.++...+++.+ +.+.+.+. .
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~glV~~ 79 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDGLVDV 79 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH---HHHHhCCceee
Confidence 799999999999999999999999999999864311 11 1222333333333332 11222221 0
Q ss_pred c-cceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc-EE
Q 015303 72 L-RSIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT-IL 149 (409)
Q Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~~ 149 (409)
+ ..+..+. ..+ ....+...+ ....-..+.|.+.|+. +.+|.++++|+.+...++.|++++++|. ..
T Consensus 80 W~~~~~~~~-~~~-------~~~~~d~~p-yvg~pgmsalak~LAt---dL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~ 147 (331)
T COG3380 80 WTPAVWTFT-GDG-------SPPRGDEDP-YVGEPGMSALAKFLAT---DLTVVLETRVTEVARTDNDWTLHTDDGTRHT 147 (331)
T ss_pred ccccccccc-cCC-------CCCCCCCCc-cccCcchHHHHHHHhc---cchhhhhhhhhhheecCCeeEEEecCCCccc
Confidence 1 0110000 000 000010001 0001223455555544 6789999999999999999999997764 67
Q ss_pred eccEEEecCCCc
Q 015303 150 KTKVLIGCDGVN 161 (409)
Q Consensus 150 ~ad~vV~AdG~~ 161 (409)
.+|.||.|--+.
T Consensus 148 ~~d~vvla~PAP 159 (331)
T COG3380 148 QFDDVVLAIPAP 159 (331)
T ss_pred ccceEEEecCCC
Confidence 899888875543
No 87
>PRK07233 hypothetical protein; Provisional
Probab=99.32 E-value=9.4e-10 Score=105.45 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=43.9
Q ss_pred HHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHHhhh
Q 015303 109 LLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL 168 (409)
Q Consensus 109 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (409)
.+.+.|.+.+ .+++|+++++|++|+.+++++.+...++.++++|.||.|...+. +.+.+
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~-~~~ll 259 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI-LARLV 259 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH-HHhhc
Confidence 3455555544 26789999999999988887766667777899999999998753 33443
No 88
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=1.5e-11 Score=114.82 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=90.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
++..+|+|||||||||++|..|.+.|++|+++||.+.+ |.-+.+.+..-. . .....+.....
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i---GGlW~y~~~~~~------~------~ss~Y~~l~tn--- 65 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI---GGLWKYTENVEV------V------HSSVYKSLRTN--- 65 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc---cceEeecCcccc------c------ccchhhhhhcc---
Confidence 34679999999999999999999999999999999773 222222221110 0 00001111110
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCCC----ceEEeCCeEEEEEEeC-CeEEEEecCCc----EEecc
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS----GTIRYSSQVVSIEESG-HFKLLHLADGT----ILKTK 152 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~ad 152 (409)
.+.....+.+.+.......+..++..+.++|.+.+.. ..|.++++|..++... +.|.|.+.+.. ..-+|
T Consensus 66 --~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd 143 (448)
T KOG1399|consen 66 --LPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFD 143 (448)
T ss_pred --CChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEee
Confidence 0001111222211112233356777999999887753 4699999999999888 78999987653 56799
Q ss_pred EEEecCCCc
Q 015303 153 VLIGCDGVN 161 (409)
Q Consensus 153 ~vV~AdG~~ 161 (409)
.||.|+|.+
T Consensus 144 ~VvVctGh~ 152 (448)
T KOG1399|consen 144 AVVVCTGHY 152 (448)
T ss_pred EEEEcccCc
Confidence 999999987
No 89
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.32 E-value=7.1e-10 Score=106.81 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
.+.+.|.+.+...+|+++++|++|+.+++++.|++.+|+++.||.||.|.-.....
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~ 277 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLP 277 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHH
Confidence 34444444443337999999999999888899999999899999999998865433
No 90
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.32 E-value=4.4e-10 Score=105.97 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=46.2
Q ss_pred eccHHHHHHHHHhhC--CC-ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHH
Q 015303 104 CVRRKLLLETLAKEL--PS-GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 165 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~--~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr 165 (409)
.++...+...|.+.+ .+ ..+..++.+..++.....+.|.+.+|. +.+|.||.|+|.++...
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l 215 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGEL 215 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHH
Confidence 456667777777655 24 456669999998875355788888887 99999999999997653
No 91
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.29 E-value=3.6e-10 Score=106.45 Aligned_cols=209 Identities=14% Similarity=0.166 Sum_probs=120.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHHcCch---hHHHhccc--------
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDAVGIG---NSLRQQHQ-------- 70 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~-------- 70 (409)
+.+||+|||||+.|+-+|.-++.+|++|+|+|+++... ..++...+-..+++++++..+. +.+.+...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 56999999999999999999999999999999998763 4456666767778888776432 22222110
Q ss_pred --cccceeee-----------------ecCCCC-----cccccccc-------cccc-----cCCccceeccHHHHHHHH
Q 015303 71 --QLRSIVAT-----------------PTISGK-----PSSERSLK-------VQGK-----YGEHEMRCVRRKLLLETL 114 (409)
Q Consensus 71 --~~~~~~~~-----------------~~~~~~-----~~~~~~~~-------~~~~-----~~~~~~~~i~r~~l~~~L 114 (409)
+....... +...+. ....+... .... ...+....++-..|.-..
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 00000000 000110 00000000 0000 112233345555555444
Q ss_pred HhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCc-----EEeccEEEecCCCchHH-HhhhCCCCCc------ccceee
Q 015303 115 AKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGT-----ILKTKVLIGCDGVNSIV-AKWLGFKNPA------FVGRSA 180 (409)
Q Consensus 115 ~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-----~~~ad~vV~AdG~~S~v-r~~l~~~~~~------~~~~~~ 180 (409)
+..+ .|.++...++|+++..+++.+.|...|.. +++|+.||.|+|+|+-- ++..+..... ..+.+.
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsHl 250 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSHL 250 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceEE
Confidence 4333 57899999999999999886566665432 68999999999999864 5555333221 123232
Q ss_pred EEEeecCCCCCCCCCceeeee-cCCcEEEEEecCCCe
Q 015303 181 IRGYSDFKGSHGFEPNFLQFF-GKGLRSGFIPCDDQT 216 (409)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~ 216 (409)
+.. .-.+....+.... .++....++|..+..
T Consensus 251 Vv~-----~~~~~~~a~~~~~~~d~r~~f~iP~~~~~ 282 (532)
T COG0578 251 VVD-----KKFPINQAVINRCRKDGRIVFAIPYEGKT 282 (532)
T ss_pred Eec-----ccCCCCceEEeecCCCCceEEEecCCCCE
Confidence 221 1111122222222 267778888888874
No 92
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.28 E-value=6e-10 Score=110.18 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=48.0
Q ss_pred eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEe--CCeE-EEEe---cCCc--EEeccEEEecCCCchH-HHhhhC
Q 015303 104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEES--GHFK-LLHL---ADGT--ILKTKVLIGCDGVNSI-VAKWLG 169 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~--~~~v-~v~~---~~g~--~~~ad~vV~AdG~~S~-vr~~l~ 169 (409)
.++...+...|++.+ .+++++.+++|+++..+ ++.+ .|+. .+++ ++++|.||.|+|+||. +++.++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 467778887777655 47899999999999876 3433 3343 2333 6899999999999986 566654
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.28 E-value=1.1e-10 Score=111.17 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=53.7
Q ss_pred eeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEe-CCeEEEEe---cCCc--EEeccEEEecCCCchH-HHhhhCCCC
Q 015303 103 RCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEES-GHFKLLHL---ADGT--ILKTKVLIGCDGVNSI-VAKWLGFKN 172 (409)
Q Consensus 103 ~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~-~~~v~v~~---~~g~--~~~ad~vV~AdG~~S~-vr~~l~~~~ 172 (409)
..++...+.+.|.+.+ .+++++++++|++++.. ++.|+++. .+++ +++||+||.|.|.+|. +.+.+|...
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~ 258 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPE 258 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 3577888888887654 36899999999999887 66787763 3442 6899999999999985 566667653
No 94
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.28 E-value=2.2e-10 Score=109.95 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=51.8
Q ss_pred eeccHHHHHHHHHhhCC--C-ceEEeCCeEEEEEEeCCe-EEEEec---CCc--EEeccEEEecCCCchH-HHhhhCCCC
Q 015303 103 RCVRRKLLLETLAKELP--S-GTIRYSSQVVSIEESGHF-KLLHLA---DGT--ILKTKVLIGCDGVNSI-VAKWLGFKN 172 (409)
Q Consensus 103 ~~i~r~~l~~~L~~~~~--~-~~i~~~~~v~~i~~~~~~-v~v~~~---~g~--~~~ad~vV~AdG~~S~-vr~~l~~~~ 172 (409)
..++...+.+.|.+.+. + ++++++++|++++.++++ |.+++. +|+ +++|++||.|+|.+|. +++.+|...
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~ 257 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPE 257 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 35777788888877652 4 799999999999886554 766653 353 6899999989888764 566777663
No 95
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.28 E-value=2.6e-09 Score=103.10 Aligned_cols=59 Identities=10% Similarity=0.229 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHHhhh
Q 015303 109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWL 168 (409)
Q Consensus 109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (409)
.|.+.|.+.+++++|+++++|+.|+.+++++.|++.+++++.||.||.|.- ...+.+.+
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll 285 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP-HDIAETLL 285 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence 455556665544679999999999999888999888888899999999885 33344444
No 96
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.27 E-value=6.7e-11 Score=107.79 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=85.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEE-eCCCCcCCcccceeccccH----HHHHHHcC-chhHHHhccccccceeeee
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVL-ESSESLRVTGFAFTVWTNA----WKALDAVG-IGNSLRQQHQQLRSIVATP 79 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~-E~~~~~~~~~~~~~~~~~~----~~~l~~~g-l~~~~~~~~~~~~~~~~~~ 79 (409)
||+|||||.||+.||+.+++.|.+|+|+ ++.+.....+|.-.+...+ .+.++.+| +.-.. .....+++..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~----aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA----ADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH----HHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH----HhHhhhhhhc
Confidence 8999999999999999999999999999 4444444455554444332 23344444 11111 1111222222
Q ss_pred cCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEE
Q 015303 80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLI 155 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV 155 (409)
....+- .........++|..+.+.+.+.+ ++++|+ ..+|+++..+++. +.|.+.+|+.+.+|.||
T Consensus 77 lN~skG----------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vV 145 (392)
T PF01134_consen 77 LNRSKG----------PAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVV 145 (392)
T ss_dssp ESTTS-----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEE
T ss_pred ccccCC----------CCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEE
Confidence 111110 00011223688988888887654 568886 5689999887766 56788899999999999
Q ss_pred ecCCC
Q 015303 156 GCDGV 160 (409)
Q Consensus 156 ~AdG~ 160 (409)
+|+|.
T Consensus 146 laTGt 150 (392)
T PF01134_consen 146 LATGT 150 (392)
T ss_dssp E-TTT
T ss_pred Eeccc
Confidence 99998
No 97
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.24 E-value=3.5e-10 Score=98.17 Aligned_cols=172 Identities=18% Similarity=0.127 Sum_probs=97.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceecccc-------------HHHHHHHcCchhHHHh
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTN-------------AWKALDAVGIGNSLRQ 67 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~-------------~~~~l~~~gl~~~~~~ 67 (409)
|.+.+||+|||||+-|+++|+.|+|+|.++.++|+.+.+...|.+...+.- ..+.++.+--.+.+..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 456789999999999999999999999999999999887655544332221 1122222200011100
Q ss_pred ccccccceeeeecCCC-------------------------Ccccccc----cccccc-cCCccceeccHHHHHHHHHhh
Q 015303 68 QHQQLRSIVATPTISG-------------------------KPSSERS----LKVQGK-YGEHEMRCVRRKLLLETLAKE 117 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~----~~~~~~-~~~~~~~~i~r~~l~~~L~~~ 117 (409)
... ..+......... +....++ ++..-. .......++...+-...|.+.
T Consensus 84 ~~~-~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~ 162 (399)
T KOG2820|consen 84 VKL-HCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDK 162 (399)
T ss_pred eee-cccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHH
Confidence 000 000000000000 0000011 100000 012223345555555666555
Q ss_pred CC--CceEEeCCeEEEEEE---eCCeEEEEecCCcEEeccEEEecCCCch--HHHhhhCCCCC
Q 015303 118 LP--SGTIRYSSQVVSIEE---SGHFKLLHLADGTILKTKVLIGCDGVNS--IVAKWLGFKNP 173 (409)
Q Consensus 118 ~~--~~~i~~~~~v~~i~~---~~~~v~v~~~~g~~~~ad~vV~AdG~~S--~vr~~l~~~~~ 173 (409)
+. |+.++.+.+|+.+.. ++..+.|.+.+|..+.++-+|.+.|+|- .++..++...|
T Consensus 163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~P 225 (399)
T KOG2820|consen 163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFP 225 (399)
T ss_pred HHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCc
Confidence 53 688999999988763 3456899999999999999999999973 23333444444
No 98
>PLN02568 polyamine oxidase
Probab=99.24 E-value=1.5e-09 Score=105.28 Aligned_cols=53 Identities=32% Similarity=0.423 Sum_probs=46.9
Q ss_pred HHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303 108 KLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV 160 (409)
Q Consensus 108 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 160 (409)
..|.+.|.+.+++..|+++++|+.|+..+++++|++.+|++++||.||.|.-.
T Consensus 242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 242 LSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 55788888888767899999999999999999999999988999999998774
No 99
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.24 E-value=1.5e-10 Score=110.55 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=51.9
Q ss_pred eeccHHHHHHHHHhhCC------C--ceEEeCCeEEEEEEe-CCeEEEEecCCcEEeccEEEecCCCchH-HHhhhCC
Q 015303 103 RCVRRKLLLETLAKELP------S--GTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNSI-VAKWLGF 170 (409)
Q Consensus 103 ~~i~r~~l~~~L~~~~~------~--~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~ 170 (409)
..++...+...|.+.+. + ++++++++|++|+.+ ++.+.|++.+| +++||.||.|.|.+|. +.+.+|.
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence 35677777777766542 3 678999999999987 45678888777 5999999999999985 5666665
No 100
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.3e-10 Score=108.52 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+.++||+|||||++|+++|+.|.+.|.+ ++|+||++.+... |... .++++.....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~-------------------W~~~-----ry~~l~~~~p 61 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT-------------------WRYN-----RYPGLRLDSP 61 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCc-------------------chhc-----cCCceEECCc
Confidence 4568999999999999999999999998 9999999764321 0000 0111111100
Q ss_pred CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC--CeEEEEecCCcE--EeccEEEe
Q 015303 81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG--HFKLLHLADGTI--LKTKVLIG 156 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~--~~ad~vV~ 156 (409)
..-......++. ....+....-.+..+..++.+......+.+++.|+....++ +.|+|+++++.+ ++||.||.
T Consensus 62 ~~~~~~~~~p~~---~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ 138 (443)
T COG2072 62 KWLLGFPFLPFR---WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVV 138 (443)
T ss_pred hheeccCCCccC---CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEE
Confidence 000000011111 00011111124566666666554445777777777665554 579999998875 45999999
Q ss_pred cCCCch
Q 015303 157 CDGVNS 162 (409)
Q Consensus 157 AdG~~S 162 (409)
|+|..|
T Consensus 139 ATG~~~ 144 (443)
T COG2072 139 ATGHLS 144 (443)
T ss_pred eecCCC
Confidence 999854
No 101
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.22 E-value=5e-12 Score=119.88 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=36.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccccee---ccc-cHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFT---VWT-NAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~---~~~-~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
|||||||||+|+++|+.+++.|.+|+|+|+...+........ +.. .... ...-|+..++.+.......... ...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~-~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQ-EDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccc-ccc
Confidence 899999999999999999999999999999987643222111 111 1111 1111334444333221111100 000
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEec--CC-cEEeccEEEec
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLA--DG-TILKTKVLIGC 157 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~--~g-~~~~ad~vV~A 157 (409)
.+.. ....+. ...-+..|.+++.+ .++++++++.|+++..++++ +.|++. +| .+++|+++|+|
T Consensus 79 ~~~~-~~~~~~----------~~~~~~~l~~~l~e--~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDa 145 (428)
T PF12831_consen 79 YGWV-SNVPFD----------PEVFKAVLDEMLAE--AGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDA 145 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-cccccc----------cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 000000 01222334444422 37999999999999988755 233333 33 47999999999
Q ss_pred CCCchHHHhhhCCC
Q 015303 158 DGVNSIVAKWLGFK 171 (409)
Q Consensus 158 dG~~S~vr~~l~~~ 171 (409)
+|- ..+....|.+
T Consensus 146 TG~-g~l~~~aG~~ 158 (428)
T PF12831_consen 146 TGD-GDLAALAGAP 158 (428)
T ss_dssp --------------
T ss_pred ccc-cccccccccc
Confidence 994 5555444443
No 102
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.22 E-value=4.3e-10 Score=107.84 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=53.4
Q ss_pred ceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeC-CeEEEEec---CC--cEEeccEEEecCCCchH-HHhhhCCCC
Q 015303 102 MRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESG-HFKLLHLA---DG--TILKTKVLIGCDGVNSI-VAKWLGFKN 172 (409)
Q Consensus 102 ~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~v~~~---~g--~~~~ad~vV~AdG~~S~-vr~~l~~~~ 172 (409)
...++...+...|.+.+ .+++++++++|++++.++ +.|.+++. ++ .+++||+||.|.|.+|. +++.+|...
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~ 251 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPE 251 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCc
Confidence 34678888888887765 378999999999998865 45666543 33 26899999999998764 577777663
No 103
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.19 E-value=4.9e-11 Score=112.13 Aligned_cols=156 Identities=21% Similarity=0.177 Sum_probs=85.7
Q ss_pred EEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc----ccce-eccc--cHHHHHHHcCchhH-HHhccc---ccccee
Q 015303 8 VIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT----GFAF-TVWT--NAWKALDAVGIGNS-LRQQHQ---QLRSIV 76 (409)
Q Consensus 8 ~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~~-~~~~--~~~~~l~~~gl~~~-~~~~~~---~~~~~~ 76 (409)
+|||||++|+++|+.|+++|.+|+|+||.+.+..+ +.+- .++. ....+++..+-... +..... ....+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 69999999999999999999999999998765321 1111 0111 01112122211000 000000 000000
Q ss_pred eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEE
Q 015303 77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVL 154 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 154 (409)
++. ..+-. +.....+. .+. ..-....+.+.|.+.+ .+++++++++|+++..+++.+.+++ ++.++.+|.|
T Consensus 81 ~~~-~~Gv~---~~~~~~g~--~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 81 FFE-SLGLE---LKVEEDGR--VFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKV 152 (400)
T ss_pred HHH-HcCCe---eEEecCCE--eEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEE
Confidence 110 00100 00000000 000 0112345555555544 3789999999999988777777777 4567999999
Q ss_pred EecCCCch-----------HHHhhhCCC
Q 015303 155 IGCDGVNS-----------IVAKWLGFK 171 (409)
Q Consensus 155 V~AdG~~S-----------~vr~~l~~~ 171 (409)
|.|+|.+| .+.+.+|..
T Consensus 153 IlAtG~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 153 ILATGGLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred EECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence 99999977 456666665
No 104
>PLN02612 phytoene desaturase
Probab=99.19 E-value=7.4e-09 Score=101.61 Aligned_cols=61 Identities=30% Similarity=0.448 Sum_probs=46.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCccc------------c----eeccccHHHHHHHcCchhH
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGF------------A----FTVWTNAWKALDAVGIGNS 64 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~------------~----~~~~~~~~~~l~~~gl~~~ 64 (409)
..+|+|||||++|+++|+.|+++|++|+|+|+++.+....+ | ....++..++++++|+.+.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR 169 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence 47899999999999999999999999999999765321110 1 1123567788888887543
No 105
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.17 E-value=2.2e-10 Score=111.93 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=48.8
Q ss_pred eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEec---CC--cEEeccEEEecCCCchH-HHhhhCCC
Q 015303 104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLA---DG--TILKTKVLIGCDGVNSI-VAKWLGFK 171 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~---~g--~~~~ad~vV~AdG~~S~-vr~~l~~~ 171 (409)
.++...|...+...+ .+++++++++|+++..+++++. |++. ++ .+++||.||.|+|.|+. +.+..+..
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~ 221 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR 221 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC
Confidence 567777777665544 4789999999999988776543 4432 23 36899999999999985 44445543
No 106
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.16 E-value=4.7e-10 Score=101.86 Aligned_cols=110 Identities=24% Similarity=0.381 Sum_probs=74.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
|||+||||||+|+++|..|++.|++|+|+|+.+. .+ ..... .. +..+ .+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---gg-~~~~~-------------~~----------~~~~---~~- 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP---GG-QLTTT-------------TE----------VENY---PG- 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC---Cc-ceeec-------------cc----------cccc---CC-
Confidence 6999999999999999999999999999998752 11 00000 00 0000 00
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
+. ..+....+...+.+.+ .++++++ ++|++++..++.+.+++.++.++++|.||.|+|...
T Consensus 50 ----~~------------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 50 ----FP------------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred ----CC------------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 00 0011122333333322 2688888 899999988888888888888899999999999754
No 107
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.16 E-value=1.6e-10 Score=111.49 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=80.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++||++|..|.+.|++|+++||.+.. |.-+....+. .-| ....++..... .
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i---GG~W~~~~~~-----~~g-------~~~~y~sl~~n---~-- 61 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI---GGLWRYTENP-----EDG-------RSSVYDSLHTN---T-- 61 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS---SGGGCHSTTC-----CCS-------EGGGSTT-B-S---S--
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC---CccCeeCCcC-----CCC-------ccccccceEEe---e--
Confidence 48999999999999999999999999999999773 2111111000 000 00011111111 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCC--C--ceEEeCCeEEEEEEeC-----CeEEEEecCCc---EEecc
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--S--GTIRYSSQVVSIEESG-----HFKLLHLADGT---ILKTK 152 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~--~~i~~~~~v~~i~~~~-----~~v~v~~~~g~---~~~ad 152 (409)
......+.+.+.+..+ ....++.++.++|.+.+. + -.|+++|+|+++++.+ +.|.|++.++. +..+|
T Consensus 62 sk~~~~fsdfp~p~~~-p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD 140 (531)
T PF00743_consen 62 SKEMMAFSDFPFPEDY-PDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFD 140 (531)
T ss_dssp -GGGSCCTTS-HCCCC-SSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEEC
T ss_pred CchHhcCCCcCCCCCC-CCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeC
Confidence 0011112221111111 124688999999988663 2 3799999999998865 36999886542 45689
Q ss_pred EEEecCCCch
Q 015303 153 VLIGCDGVNS 162 (409)
Q Consensus 153 ~vV~AdG~~S 162 (409)
.||.|+|.++
T Consensus 141 ~VvvatG~~~ 150 (531)
T PF00743_consen 141 AVVVATGHFS 150 (531)
T ss_dssp EEEEEE-SSS
T ss_pred eEEEcCCCcC
Confidence 9999999986
No 108
>PLN02268 probable polyamine oxidase
Probab=99.14 E-value=6.6e-10 Score=106.35 Aligned_cols=41 Identities=20% Similarity=0.124 Sum_probs=36.8
Q ss_pred CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303 120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV 160 (409)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 160 (409)
+++|+++++|++|...++++.|++.+|+++.||.||.|.-.
T Consensus 210 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 45799999999999998899999999988999999999853
No 109
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.14 E-value=9.6e-09 Score=100.18 Aligned_cols=61 Identities=26% Similarity=0.426 Sum_probs=48.8
Q ss_pred HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchHHHhhh
Q 015303 108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWL 168 (409)
Q Consensus 108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (409)
..+.+.|.+.+ .+++|+++++|++|..++++ +.|++.+|++++||.||.|.+......+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 45666666654 37899999999999887765 678888888899999999999877776655
No 110
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.7e-10 Score=98.52 Aligned_cols=112 Identities=23% Similarity=0.334 Sum_probs=75.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+.+||+|||||||||++|.++++++++ ++|+|+... . +. +.... ...+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g--g~--------------------------~~~~~-~veny 51 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G--GQ--------------------------LTKTT-DVENY 51 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C--Cc--------------------------cccce-eecCC
Confidence 468999999999999999999999999 666665432 1 10 00000 00000
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG 159 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 159 (409)
.+ + ...+.-..|.+.+.+.+ .++++.. ..|..++..++.+.|++.++. ++|+.||.|+|
T Consensus 52 pg-------~----------~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG 112 (305)
T COG0492 52 PG-------F----------PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATG 112 (305)
T ss_pred CC-------C----------ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcC
Confidence 00 0 00134456677776665 4667666 677777776668899999988 99999999999
Q ss_pred CchH
Q 015303 160 VNSI 163 (409)
Q Consensus 160 ~~S~ 163 (409)
....
T Consensus 113 ~~~~ 116 (305)
T COG0492 113 AGAR 116 (305)
T ss_pred Cccc
Confidence 8653
No 111
>PLN02576 protoporphyrinogen oxidase
Probab=99.13 E-value=2.5e-08 Score=97.15 Aligned_cols=37 Identities=32% Similarity=0.651 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~ 39 (409)
.++||+|||||++||++|+.|++. |++|+|+|+++.+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv 48 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV 48 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 357999999999999999999999 9999999998764
No 112
>PLN02661 Putative thiazole synthesis
Probab=99.12 E-value=9.6e-10 Score=98.76 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=76.1
Q ss_pred cccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCcCCcc--cceecc-----ccHHHHHHHcCchhHHHhccccccce
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESLRVTG--FAFTVW-----TNAWKALDAVGIGNSLRQQHQQLRSI 75 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~--~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~~~ 75 (409)
++||+|||||++|+++|+.|++. |++|+|+||...+.... .+..+. ....++|+++|+. ++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~---------fd~- 161 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP---------YDE- 161 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC---------ccc-
Confidence 57999999999999999999986 89999999987653211 111111 1122333333331 100
Q ss_pred eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE-EEe------cC
Q 015303 76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL-LHL------AD 145 (409)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~------~~ 145 (409)
..+ + ....+-..+.+.|.+.+ ++++++.++.+.++..+++.+. +.+ .+
T Consensus 162 -----~dg----------------y-~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~ 219 (357)
T PLN02661 162 -----QEN----------------Y-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQN 219 (357)
T ss_pred -----CCC----------------e-eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhc
Confidence 000 0 00011123334444432 4789999999999987766522 221 11
Q ss_pred --------CcEEeccEEEecCCCchH
Q 015303 146 --------GTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 146 --------g~~~~ad~vV~AdG~~S~ 163 (409)
...++|+.||.|+|..++
T Consensus 220 ~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 220 HDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred cCCCCccceeEEECCEEEEcCCCCCc
Confidence 126899999999996554
No 113
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.11 E-value=6.3e-10 Score=107.35 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=35.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+.++||+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 67789999999999999999999999999999999863
No 114
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.11 E-value=9.8e-10 Score=102.70 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=43.1
Q ss_pred eccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 104 CVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
.++...+...|.+.+ .+++++.+++|++++.. .|++.+|. ++||.||.|+|.+|.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChh
Confidence 566777777777653 37899999999999643 56677665 789999999999874
No 115
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.11 E-value=1.3e-08 Score=98.86 Aligned_cols=62 Identities=27% Similarity=0.297 Sum_probs=49.1
Q ss_pred HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchHHHhhhC
Q 015303 108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWLG 169 (409)
Q Consensus 108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (409)
..+.+.|.+.+ .+++|+++++|+.|..++++ +.|.+.+|+++++|.||.|.|.+..+++.++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence 45556666554 37899999999999876554 5677888888999999999999988877763
No 116
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.09 E-value=4.2e-09 Score=99.23 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=64.1
Q ss_pred ceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeC-CeEEEEecCCcEEeccEEEecCCCchHH-HhhhCCCCCcccc
Q 015303 102 MRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESG-HFKLLHLADGTILKTKVLIGCDGVNSIV-AKWLGFKNPAFVG 177 (409)
Q Consensus 102 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v~v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~~~~~~~ 177 (409)
...++...+.+.|+..+. ++.|+.+|.|++|.... +.+-|++..|. +++..+|.|+|.|... -+..+...|-.+-
T Consensus 181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~ 259 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPLVPM 259 (856)
T ss_pred CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHHHhhhhcCCcccceee
Confidence 347888999999987663 78999999999997554 45778888887 9999999999999754 3344666665555
Q ss_pred eeeEEEeecCCC
Q 015303 178 RSAIRGYSDFKG 189 (409)
Q Consensus 178 ~~~~~~~~~~~~ 189 (409)
.+.+.-...++.
T Consensus 260 ~H~YvvT~~IeG 271 (856)
T KOG2844|consen 260 HHAYVVTSRIEG 271 (856)
T ss_pred eeeEEEecccCC
Confidence 555555444443
No 117
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.09 E-value=1.3e-09 Score=106.06 Aligned_cols=110 Identities=25% Similarity=0.301 Sum_probs=76.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+||+||||||+|+++|..|++.|++|+|+|+. .|. . +. ...++ . .. .
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-----~GG-~-~~-------~~~~~-----------~---~~---~- 258 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-----FGG-Q-VL-------DTMGI-----------E---NF---I- 258 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-----CCC-e-ee-------ccCcc-----------c---cc---C-
Confidence 589999999999999999999999999999753 111 0 00 00000 0 00 0
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.+ . ......+.+.|.+.+ -+++++++++|+++...++.+.+++.++.++.+|.||.|+|..
T Consensus 259 ----~~--~-----------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 259 ----SV--P-----------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred ----CC--C-----------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 00 0 012234444444433 2689999999999998877888888888889999999999986
Q ss_pred h
Q 015303 162 S 162 (409)
Q Consensus 162 S 162 (409)
+
T Consensus 322 ~ 322 (517)
T PRK15317 322 W 322 (517)
T ss_pred c
Confidence 5
No 118
>PLN02676 polyamine oxidase
Probab=99.08 E-value=3.5e-08 Score=95.02 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhCC--------CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 107 RKLLLETLAKELP--------SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 107 r~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
-..+.+.|.+.+. +.+|+++++|++|..++++|+|++.+|++++||.||.|...+.
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~v 286 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGV 286 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHH
Confidence 3556677766542 2579999999999999999999999999999999999998543
No 119
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.06 E-value=2.4e-09 Score=104.18 Aligned_cols=110 Identities=23% Similarity=0.329 Sum_probs=74.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+||+||||||||+++|..|++.|++|+|+|.. .| |... ...+ +..+ .+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-----~G-G~~~--------~~~~--------------~~~~---~~ 260 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-----IG-GQVK--------DTVG--------------IENL---IS 260 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-----CC-Cccc--------cCcC--------------cccc---cc
Confidence 589999999999999999999999999999743 11 1000 0000 0000 00
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.. ......+.+.+.+.+ .+++++.+++|+++..+++.+.+++.++.++.+|.||.|+|..
T Consensus 261 -------~~-----------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 261 -------VP-----------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred -------cC-----------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 00 011122333333222 2789999999999988777788888888889999999999986
Q ss_pred h
Q 015303 162 S 162 (409)
Q Consensus 162 S 162 (409)
.
T Consensus 323 ~ 323 (515)
T TIGR03140 323 W 323 (515)
T ss_pred c
Confidence 3
No 120
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.05 E-value=3e-07 Score=84.06 Aligned_cols=201 Identities=16% Similarity=0.028 Sum_probs=100.3
Q ss_pred CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHHhhhCCC--CCcccce--------eeEEEeecCCC
Q 015303 120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVAKWLGFK--NPAFVGR--------SAIRGYSDFKG 189 (409)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~--~~~~~~~--------~~~~~~~~~~~ 189 (409)
+-.|..+.+|..|.+.+++|+|++.+..++++|++|.+-= .+.+ .++... .+....+ .+....+.++.
T Consensus 220 ~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP-l~~l-~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~r 297 (450)
T COG1231 220 GTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP-LAIL-GQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSR 297 (450)
T ss_pred hceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC-HHHH-hhcccCCCCCHHHHHHhcCcCcchheeeeeecCc
Confidence 4578889999999999999999999966799999998765 3332 222222 1111000 00111122222
Q ss_pred CCCCC---CceeeeecCCcEEEEEecC---CCeEEEEEE--ecCCCcCcccccChHHHHHHHHHHhCCCCh-HHHHHHHc
Q 015303 190 SHGFE---PNFLQFFGKGLRSGFIPCD---DQTIYWFFT--WTSSSQDKELEDHSAELKQFVLGKLHDLPA-QVKAVIEK 260 (409)
Q Consensus 190 ~~~~~---~~~~~~~~~~~~~~~~p~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 260 (409)
+.-.. -.-..+......+..+|-. ++.. ..+. ...+........++++..+.++..+....+ .....++.
T Consensus 298 pFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~g-Vl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~ 376 (450)
T COG1231 298 PFWEEAGILGGESLTDLGLGFISYPSAPFADGPG-VLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDY 376 (450)
T ss_pred hhhhhcccCCceEeecCCcceEecCccccCCCce-EEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhcccccc
Confidence 11000 1112222333333334443 3322 1222 113333344677788888888887774433 44333332
Q ss_pred CCCCceEeeccccc---Ccccccccc------cCCCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhh
Q 015303 261 TPLDSIISSRLQYR---QPQEVLWGN------ISRGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALK 326 (409)
Q Consensus 261 ~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~ 326 (409)
.....+...+.... ...+-...+ -..+||.++| --..|..+.=+.-|++++..+|..|...+.
T Consensus 377 ~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~Ag---tEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 377 GASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAG---TEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred ceeeecccCCcCCccccccCCcccccccccccCCCCceEEee---ecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 11111100000000 000000001 1347888887 123445555566799999999999887654
No 121
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.05 E-value=2.3e-09 Score=103.08 Aligned_cols=143 Identities=18% Similarity=0.219 Sum_probs=83.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccc----cHHHHHHHcC-chhHHHhccccccceeee
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWT----NAWKALDAVG-IGNSLRQQHQQLRSIVAT 78 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~----~~~~~l~~~g-l~~~~~~~~~~~~~~~~~ 78 (409)
|||+|||||++|+.+|..+++.|.+|+|+|++... ...+|.-.+.. ...+.++.+| ....+.+.. .+.+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~----~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKA----GLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhh----ceehe
Confidence 69999999999999999999999999999987431 11122111111 0122333332 111111100 11111
Q ss_pred ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEe-CC-eEEEEecCCcEEeccE
Q 015303 79 PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEES-GH-FKLLHLADGTILKTKV 153 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~-~~-~v~v~~~~g~~~~ad~ 153 (409)
.....+ +.........+++..+...+.+.+ ++++++.+ +|+.+..+ ++ .+.|.+.+|..+.|+.
T Consensus 77 ~ln~sk----------gpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~ 145 (617)
T TIGR00136 77 VLNSSK----------GPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKA 145 (617)
T ss_pred ecccCC----------CCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCE
Confidence 100000 000001112578877777776544 46777654 67777554 33 4567888888899999
Q ss_pred EEecCCCch
Q 015303 154 LIGCDGVNS 162 (409)
Q Consensus 154 vV~AdG~~S 162 (409)
||+|+|.+.
T Consensus 146 VILATGtfL 154 (617)
T TIGR00136 146 VIITTGTFL 154 (617)
T ss_pred EEEccCccc
Confidence 999999995
No 122
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.04 E-value=5.8e-09 Score=101.21 Aligned_cols=37 Identities=35% Similarity=0.514 Sum_probs=34.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||||||+|++|+++|+.+++.|.+|+|+||.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 3689999999999999999999999999999998764
No 123
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.04 E-value=4.7e-09 Score=85.06 Aligned_cols=140 Identities=19% Similarity=0.161 Sum_probs=76.9
Q ss_pred EEECCChHHHHHHHHHHHc-----CCceEEEeCCCCcCCcccceecccc-HHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 8 VIVGAGIAGLTTSLGLYRL-----GIRSMVLESSESLRVTGFAFTVWTN-AWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 8 ~IiG~G~aGl~~A~~L~~~-----g~~V~v~E~~~~~~~~~~~~~~~~~-~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+||||||+|++++..|.+. ..+|+|||+.+. +.|..+.+. ....+ ++...........-.+..+..+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~----G~G~~~~~~~~~~~l--lN~~a~~~s~~~~~~~~~f~~Wl 74 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF----GAGGAYRPDQPPSHL--LNTPADQMSLFPDDPGDDFVDWL 74 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc----cccccCCCCCChHHh--hcccccccccccccCCCCHHHHH
Confidence 6999999999999999887 468999999543 333333332 11111 11110000000000001111110
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhh-------CC-CceEE-eCCeEEEEEEeCCeEEEEecCCcEEecc
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKE-------LP-SGTIR-YSSQVVSIEESGHFKLLHLADGTILKTK 152 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~-------~~-~~~i~-~~~~v~~i~~~~~~v~v~~~~g~~~~ad 152 (409)
....... ..........+|..+-++|.+. ++ +++|. ...+|++++..++++.+.+.+|..+.+|
T Consensus 75 ~~~~~~~-------~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d 147 (156)
T PF13454_consen 75 RANGADE-------AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD 147 (156)
T ss_pred HhcCccc-------ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence 0000000 0001112235555555444432 22 44443 3679999999999999999999999999
Q ss_pred EEEecCCC
Q 015303 153 VLIGCDGV 160 (409)
Q Consensus 153 ~vV~AdG~ 160 (409)
.||.|+|.
T Consensus 148 ~VvLa~Gh 155 (156)
T PF13454_consen 148 AVVLATGH 155 (156)
T ss_pred EEEECCCC
Confidence 99999995
No 124
>PLN02487 zeta-carotene desaturase
Probab=99.03 E-value=1.4e-07 Score=91.75 Aligned_cols=61 Identities=26% Similarity=0.475 Sum_probs=47.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC--------ccc----ce----eccccHHHHHHHcCchhHH
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV--------TGF----AF----TVWTNAWKALDAVGIGNSL 65 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~--------~~~----~~----~~~~~~~~~l~~~gl~~~~ 65 (409)
.+|+|||||++|+++|+.|++.|++|+|+|+.+.+.. .+. |. ...++..++++++|+.+.+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~ 152 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENL 152 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccc
Confidence 5999999999999999999999999999999876531 111 11 1235678899999987654
No 125
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.03 E-value=6.8e-08 Score=90.10 Aligned_cols=61 Identities=23% Similarity=0.460 Sum_probs=47.3
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCC-------c-------ccceecc-ccHHHHHHHcCchhHHH
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRV-------T-------GFAFTVW-TNAWKALDAVGIGNSLR 66 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~-------~-------~~~~~~~-~~~~~~l~~~gl~~~~~ 66 (409)
.|+|||||++||++|+.|++++ .+|+|+|+++...- . +...... +..++.+.++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 6999999999999999999999 99999999864311 1 1122233 56778888999887776
No 126
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.03 E-value=4.8e-08 Score=97.60 Aligned_cols=36 Identities=36% Similarity=0.644 Sum_probs=33.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
+.+|+|||||++|+++|+.|++.|++|+|+|++..+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 478999999999999999999999999999998754
No 127
>PLN02529 lysine-specific histone demethylase 1
Probab=99.02 E-value=3.8e-08 Score=97.85 Aligned_cols=35 Identities=37% Similarity=0.672 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|||||++|+++|..|+++|++|+|+|+++.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 47999999999999999999999999999999764
No 128
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.02 E-value=2.3e-09 Score=103.21 Aligned_cols=38 Identities=29% Similarity=0.536 Sum_probs=35.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+.+|||+||||||+|+.+|..|++.|.+|+|+|+.+.
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~ 38 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYST 38 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 67789999999999999999999999999999998753
No 129
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.02 E-value=3.3e-09 Score=104.01 Aligned_cols=113 Identities=20% Similarity=0.327 Sum_probs=73.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
|.+.|||+||||||||+++|..|+++|++|+|+|++.. + |..... ..+ .+
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~----G-G~~~~~------------~~i------------~~- 50 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF----G-GQITIT------------SEV------------VN- 50 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC----C-ceEEec------------ccc------------cc-
Confidence 66679999999999999999999999999999998632 1 110000 000 00
Q ss_pred CCCCcccccccccccccCCccceeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecC
Q 015303 81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCD 158 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 158 (409)
..+. ..+....+.+.+.+.+ .+++++ +++|+.++.+++.+.+.+.++ .+.++.||.|+
T Consensus 51 ~pg~------------------~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlAT 110 (555)
T TIGR03143 51 YPGI------------------LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIAT 110 (555)
T ss_pred CCCC------------------cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECC
Confidence 0000 0112233444443332 256764 778999887766677777666 58999999999
Q ss_pred CCchH
Q 015303 159 GVNSI 163 (409)
Q Consensus 159 G~~S~ 163 (409)
|....
T Consensus 111 Ga~p~ 115 (555)
T TIGR03143 111 GASPR 115 (555)
T ss_pred CCccC
Confidence 98653
No 130
>PLN02976 amine oxidase
Probab=99.02 E-value=1.5e-07 Score=97.51 Aligned_cols=36 Identities=42% Similarity=0.610 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+|||||++|+++|+.|++.|++|+|+|+++.+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 479999999999999999999999999999997644
No 131
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.99 E-value=3.3e-09 Score=102.39 Aligned_cols=36 Identities=28% Similarity=0.560 Sum_probs=34.3
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
|...|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 667899999999999999999999999999999986
No 132
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.99 E-value=1e-07 Score=91.74 Aligned_cols=59 Identities=31% Similarity=0.481 Sum_probs=45.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc--------c----cc----eeccccHHHHHHHcCchhH
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT--------G----FA----FTVWTNAWKALDAVGIGNS 64 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~----~~----~~~~~~~~~~l~~~gl~~~ 64 (409)
+|+|||||++||++|+.|+++|++|+|+|+++.+.-. + .| ....++..++++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 5899999999999999999999999999998754211 1 11 1123678899999987543
No 133
>PLN03000 amine oxidase
Probab=98.99 E-value=1.4e-07 Score=94.36 Aligned_cols=36 Identities=39% Similarity=0.660 Sum_probs=33.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||++|+.+|..|++.|++|+|+|+++.+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 479999999999999999999999999999998754
No 134
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.99 E-value=1.2e-07 Score=91.37 Aligned_cols=60 Identities=32% Similarity=0.528 Sum_probs=45.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc--------ccc--------eeccccHHHHHHHcCchhHH
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT--------GFA--------FTVWTNAWKALDAVGIGNSL 65 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~~--------~~~~~~~~~~l~~~gl~~~~ 65 (409)
+|+|||||++|+++|+.|+++|++|+|+|+++.+... +.. ....++..++++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 5899999999999999999999999999998765311 110 01234567888888876544
No 135
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.98 E-value=2e-09 Score=99.26 Aligned_cols=112 Identities=18% Similarity=0.243 Sum_probs=70.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc--------ccceeccccHHHHHHHcCchh-HHHhccccccce
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT--------GFAFTVWTNAWKALDAVGIGN-SLRQQHQQLRSI 75 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~~~ 75 (409)
.||+|||||++|+.+|+.|+++|++|+|+|+++.+... ......+..+...+...|++. ++...+. .
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----l 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----L 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----h
Confidence 59999999999999999999999999999987654211 122233444556677778764 3333221 1
Q ss_pred eeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEE
Q 015303 76 VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIE 133 (409)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~ 133 (409)
.+.. .. ....+ ......++|..+.+.|.+.+ ++++++ ..+|+++.
T Consensus 79 ~~~a-ad-----~~~vP------A~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 79 IMEA-AD-----AHRVP------AGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred heec-cc-----ccCCC------CccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 1110 00 01111 11223688888888887765 567887 56787774
No 136
>PRK06370 mercuric reductase; Validated
Probab=98.97 E-value=3.2e-09 Score=102.24 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
||.+|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 6778999999999999999999999999999999864
No 137
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.97 E-value=8.6e-09 Score=98.73 Aligned_cols=34 Identities=35% Similarity=0.666 Sum_probs=32.2
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCc
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESL 39 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~ 39 (409)
||+|||||++|+++|+.++++| .+|+|+||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 8999999999999999999999 999999998764
No 138
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.96 E-value=4.1e-09 Score=101.42 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++|||+||||||+|+++|..+++.|.+|+|+|++.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 35999999999999999999999999999999754
No 139
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.94 E-value=1.9e-08 Score=99.04 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE----EEecCCc--EEeccEEEecCCCchHH
Q 015303 108 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL----LHLADGT--ILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 108 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~----v~~~~g~--~~~ad~vV~AdG~~S~v 164 (409)
..+...|.+.+ ++++++.++.++++..+++.+. +...+++ .+.|+.||.|||..|.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 34555555543 4689999999999987766543 2344664 68999999999999875
No 140
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.94 E-value=1.4e-08 Score=100.21 Aligned_cols=34 Identities=35% Similarity=0.618 Sum_probs=31.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
||+|||||+||+++|+.+++.|.+|+|+||....
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 8999999999999999999999999999998653
No 141
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.94 E-value=2.4e-08 Score=94.88 Aligned_cols=38 Identities=29% Similarity=0.539 Sum_probs=33.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
|...+||+|||+|.||+++|+.++ .|.+|+|+||.+..
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 556799999999999999999985 69999999998754
No 142
>PRK09897 hypothetical protein; Provisional
Probab=98.94 E-value=4.6e-09 Score=101.04 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=78.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceecccc--HHHHHHHcC---c---hhHHHhccccccc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTN--AWKALDAVG---I---GNSLRQQHQQLRS 74 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~--~~~~l~~~g---l---~~~~~~~~~~~~~ 74 (409)
.+|+||||||+|+++|..|.+.+ ++|+|||++..+ |.|..+++. +..++-... + ...+.+-... ..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~---G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~-~~ 77 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA---GVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQK-QE 77 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC---CcceeecCCCChHHHHhcccccccCCChHHHHHHhhh-hh
Confidence 48999999999999999998865 589999997653 344444431 222221110 0 0011000000 00
Q ss_pred eeeeecCCCCcccccccccccccCCccceecc----HHHHHHHHHhhC--CC--ceEEeCCeEEEEEEeCCeEEEEecCC
Q 015303 75 IVATPTISGKPSSERSLKVQGKYGEHEMRCVR----RKLLLETLAKEL--PS--GTIRYSSQVVSIEESGHFKLLHLADG 146 (409)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----r~~l~~~L~~~~--~~--~~i~~~~~v~~i~~~~~~v~v~~~~g 146 (409)
..... ..+...... . .+ .+..+.+. +..|... .+.+ .+ +.++.+++|++++..++++.+++.++
T Consensus 78 ~~~~~-~~g~~~~~l--~-~~---~f~PR~l~G~YL~~~f~~l-~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g 149 (534)
T PRK09897 78 DSHLQ-RYGVKKETL--H-DR---QFLPRILLGEYFRDQFLRL-VDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD 149 (534)
T ss_pred HHHHH-hcCCcceee--c-CC---ccCCeecchHHHHHHHHHH-HHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC
Confidence 00000 000000000 0 00 11111122 2333332 2332 23 67788999999999888899988654
Q ss_pred -cEEeccEEEecCCCc
Q 015303 147 -TILKTKVLIGCDGVN 161 (409)
Q Consensus 147 -~~~~ad~vV~AdG~~ 161 (409)
.++.+|.||.|+|..
T Consensus 150 g~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 150 LPSETFDLAVIATGHV 165 (534)
T ss_pred CeEEEcCEEEECCCCC
Confidence 679999999999963
No 143
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=2.1e-08 Score=98.91 Aligned_cols=36 Identities=33% Similarity=0.571 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~ 38 (409)
..+||+|||||+||+++|+.+++.| .+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 4589999999999999999999874 89999999865
No 144
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=1.7e-08 Score=99.53 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=33.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC---CceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~~~ 39 (409)
.++||+|||+|+|||++|+.+++.| .+|+|+||....
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM 43 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence 4689999999999999999999998 899999998754
No 145
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.92 E-value=2.2e-08 Score=98.34 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=41.8
Q ss_pred HHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE----EEecCCc--EEeccEEEecCCCchHH
Q 015303 108 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL----LHLADGT--ILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 108 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~----v~~~~g~--~~~ad~vV~AdG~~S~v 164 (409)
..+...|.+.+ ++++++.++.++++..+++.+. +...+|+ .+.|+.||.|||..+.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45666666543 4689999999999987766543 2334564 68899999999998864
No 146
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.91 E-value=2e-08 Score=98.21 Aligned_cols=37 Identities=38% Similarity=0.620 Sum_probs=34.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|+|||++|+.+++.|.+|+|+||....
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 3589999999999999999999999999999998754
No 147
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.91 E-value=1.9e-08 Score=92.12 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCCe-EEEEecC---C--cEEeccEEEecCCCchHH-HhhhCCCCC
Q 015303 105 VRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGHF-KLLHLAD---G--TILKTKVLIGCDGVNSIV-AKWLGFKNP 173 (409)
Q Consensus 105 i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~-v~v~~~~---g--~~~~ad~vV~AdG~~S~v-r~~l~~~~~ 173 (409)
++-..|.+.|.+.+ ++++++++++|++|.+.+++ |.|+..| + .++++++|++..|.+|-. .+..|++..
T Consensus 178 VnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~ 256 (488)
T PF06039_consen 178 VNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEG 256 (488)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhh
Confidence 44455555555443 47899999999999998766 9998753 2 379999999988888754 455566543
No 148
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.91 E-value=2e-08 Score=96.59 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=32.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+||+|||||+||+++|+.+++.|.+|+|+||...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999754
No 149
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.89 E-value=8e-09 Score=98.94 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+|||+||||||+|+++|..++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 150
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.89 E-value=1.5e-08 Score=96.58 Aligned_cols=58 Identities=28% Similarity=0.282 Sum_probs=39.0
Q ss_pred cHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEe---cCCc--EEeccEEEecCCCchH
Q 015303 106 RRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHL---ADGT--ILKTKVLIGCDGVNSI 163 (409)
Q Consensus 106 ~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~---~~g~--~~~ad~vV~AdG~~S~ 163 (409)
....+.+.|.+.+ .+++|+++++++++..++++|+ +.. .+++ +++|+.||.|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3456666666654 3699999999999999887633 222 2444 6889999999999985
No 151
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.88 E-value=1e-08 Score=98.87 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|||+||||||+|+++|..|++.|++|+|+|++..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 469999999999999999999999999999998654
No 152
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.88 E-value=5.7e-08 Score=95.39 Aligned_cols=37 Identities=35% Similarity=0.627 Sum_probs=35.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|+.++||+|||+|.|||++|+.+++.|.+|+|+||.+
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 6778999999999999999999999999999999987
No 153
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.88 E-value=2.3e-08 Score=95.84 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++|||+||||||+|+.+|+.|+++|++|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 56999999999999999999999999999999874
No 154
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.88 E-value=2.8e-08 Score=98.34 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~ 39 (409)
++||+|||||+||+++|+.+++. |.+|+|+||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 47999999999999999999998 9999999998753
No 155
>PRK06116 glutathione reductase; Validated
Probab=98.87 E-value=1.3e-08 Score=97.65 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
|+.+|||+||||||+|+++|..|+++|++|+|+|+.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 666799999999999999999999999999999986
No 156
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.87 E-value=3.5e-08 Score=95.54 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=42.1
Q ss_pred HHHHHHHHhhC---CCceEEeCCeEEEEEEeCCeEE-EEecC-C--cEEeccEEEecCCCchHHH
Q 015303 108 KLLLETLAKEL---PSGTIRYSSQVVSIEESGHFKL-LHLAD-G--TILKTKVLIGCDGVNSIVA 165 (409)
Q Consensus 108 ~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~-g--~~~~ad~vV~AdG~~S~vr 165 (409)
..+...|.+.+ ++++++++++++++..+++.+. +...+ + ..++++.||.|+|.+|.+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~ 192 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLY 192 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCC
Confidence 45666666544 4789999999999987666543 33332 2 3689999999999999753
No 157
>PRK10262 thioredoxin reductase; Provisional
Probab=98.87 E-value=4.1e-08 Score=89.95 Aligned_cols=112 Identities=20% Similarity=0.283 Sum_probs=68.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
++.+||+||||||||+++|..|+++|++|+++|+... .+. ....+ .....
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~---gg~-~~~~~-------------------------~~~~~- 53 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK---GGQ-LTTTT-------------------------EVENW- 53 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC---CCc-eecCc-------------------------eECCC-
Confidence 3568999999999999999999999999999995422 111 10000 00000
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG 159 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 159 (409)
.+.. ..+....+.+.+.+... +.++.++ +|+.++..++.++++..++ .+.+|.||.|+|
T Consensus 54 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG 114 (321)
T PRK10262 54 PGDP-----------------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATG 114 (321)
T ss_pred CCCC-----------------CCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCC
Confidence 0000 00112233333333221 3455554 5777877777777766544 689999999999
Q ss_pred Cch
Q 015303 160 VNS 162 (409)
Q Consensus 160 ~~S 162 (409)
...
T Consensus 115 ~~~ 117 (321)
T PRK10262 115 ASA 117 (321)
T ss_pred CCC
Confidence 864
No 158
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=6.4e-08 Score=96.19 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||||.|||++|+.+++.|.+|+|+||...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 579999999999999999999999999999986543
No 159
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.86 E-value=8.8e-07 Score=77.44 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHH----cCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYR----LGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~----~g~~V~v~E~~~~~ 39 (409)
++||+|||||..|++.|+.|.+ .|++|+|+||++..
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 5799999999999999999976 47999999998754
No 160
>PRK14694 putative mercuric reductase; Provisional
Probab=98.84 E-value=1.3e-08 Score=98.18 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 6999999999999999999999999999999863
No 161
>PRK07121 hypothetical protein; Validated
Probab=98.83 E-value=2e-08 Score=97.51 Aligned_cols=36 Identities=33% Similarity=0.511 Sum_probs=33.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 589999999999999999999999999999998764
No 162
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=1.6e-08 Score=97.64 Aligned_cols=35 Identities=29% Similarity=0.574 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES 35 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
|..+|||+||||||+|+++|..+++.|.+|+|+|+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 66789999999999999999999999999999998
No 163
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.82 E-value=9.1e-09 Score=87.55 Aligned_cols=33 Identities=42% Similarity=0.758 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987754
No 164
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=7.4e-08 Score=95.70 Aligned_cols=36 Identities=33% Similarity=0.403 Sum_probs=33.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+|+||+++|+.+++.|.+|+|+||....
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 589999999999999999999999999999998643
No 165
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.81 E-value=1.1e-08 Score=98.56 Aligned_cols=36 Identities=31% Similarity=0.582 Sum_probs=34.3
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
||.+|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 677899999999999999999999999999999986
No 166
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.80 E-value=1.8e-08 Score=96.43 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 36999999999999999999999999999999863
No 167
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.80 E-value=1.7e-07 Score=90.46 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=38.7
Q ss_pred CceEEeCCeEEEEEEeCCeEEEEecCC--cEEeccEEEecCCCchHHH
Q 015303 120 SGTIRYSSQVVSIEESGHFKLLHLADG--TILKTKVLIGCDGVNSIVA 165 (409)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vV~AdG~~S~vr 165 (409)
+++++.+++|++++.+++.+.+.+.+| .++.+|.||.|.|..+...
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 689999999999988777787877777 4799999999999876543
No 168
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.78 E-value=1.9e-07 Score=66.28 Aligned_cols=80 Identities=28% Similarity=0.394 Sum_probs=62.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCCc
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGKP 85 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 85 (409)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.+. +..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------~~~---------------------- 40 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------FDP---------------------- 40 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT------------------SSH----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh------------------cCH----------------------
Confidence 5899999999999999999999999999998763310 000
Q ss_pred ccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC
Q 015303 86 SSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG 146 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g 146 (409)
-.+..+.+.|.+. ++++++++.++.++.++++++|+++||
T Consensus 41 -------------------~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 41 -------------------DAAKILEEYLRKR--GVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp -------------------HHHHHHHHHHHHT--TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred -------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 0123345555554 899999999999999987777888876
No 169
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.78 E-value=2.5e-08 Score=93.85 Aligned_cols=37 Identities=32% Similarity=0.582 Sum_probs=35.2
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|+.+||++|||+||+|..+|..+++.|.+|+++|+..
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 6778999999999999999999999999999999995
No 170
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.77 E-value=1.2e-07 Score=89.52 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=37.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR 40 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
|++.|||+|||+|++|+.+|..|++.|.+|+++|+++...
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG 40 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence 7888999999999999999999999999999999997653
No 171
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.77 E-value=2.9e-08 Score=94.98 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++|||+||||||||+++|..|++.|.+|+|+||++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 469999999999999999999999999999999853
No 172
>PRK08275 putative oxidoreductase; Provisional
Probab=98.77 E-value=1.2e-07 Score=93.24 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~ 39 (409)
.+||+|||||+||+++|+.+++. |.+|+|+||....
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 48999999999999999999987 6899999998753
No 173
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.75 E-value=4.8e-08 Score=94.24 Aligned_cols=35 Identities=23% Similarity=0.532 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999999999999875
No 174
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.75 E-value=1.3e-06 Score=80.11 Aligned_cols=35 Identities=43% Similarity=0.690 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
..+|+|||||+||+++|..|.+.|. +|+|+|..+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR 56 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR 56 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc
Confidence 4689999999999999999997765 8999998774
No 175
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=1.8e-07 Score=91.93 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+||+|||+|.||+++|+.+++.|.+|+|+||...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 458999999999999999999999999999999864
No 176
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.74 E-value=1.8e-07 Score=91.82 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=34.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999998754
No 177
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.74 E-value=2.1e-08 Score=68.29 Aligned_cols=32 Identities=41% Similarity=0.672 Sum_probs=29.2
Q ss_pred EECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303 9 IVGAGIAGLTTSLGLYRLGIRSMVLESSESLR 40 (409)
Q Consensus 9 IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999998754
No 178
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.73 E-value=1.6e-07 Score=91.14 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+||+|||+|.||+++|+.+++ |.+|+|+||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~ 37 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR 37 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence 35899999999999999999987 8999999998754
No 179
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.72 E-value=8.9e-08 Score=94.49 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4689999999999999999999999999999998643
No 180
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.72 E-value=4e-08 Score=90.67 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=43.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC-CcccceeccccHHHHHHH
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR-VTGFAFTVWTNAWKALDA 58 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~ 58 (409)
..|||+|||||-+|.-+|+-.+-+|++|.|+|++++.. ..+++..+-..+.++|++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek 122 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK 122 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHH
Confidence 35999999999999999999999999999999998753 233444444555666554
No 181
>PLN02507 glutathione reductase
Probab=98.72 E-value=8.4e-08 Score=92.87 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES 35 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
+|||+||||||+|+.+|..+++.|.+|+|+|+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999997
No 182
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=2.4e-07 Score=91.50 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|+|||++|+.+++.|.+|+|+||....
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4579999999999999999999999999999988653
No 183
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.70 E-value=7.2e-08 Score=89.64 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.||+|||||++|+.+|+.|+++|++|+|+|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 4899999999999999999999999999998765
No 184
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.70 E-value=6.4e-08 Score=95.52 Aligned_cols=36 Identities=28% Similarity=0.625 Sum_probs=33.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+|++|+++|+.++++|.+|+|+||....
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 589999999999999999999999999999998754
No 185
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.70 E-value=3.3e-07 Score=91.37 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=33.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+||+|||||.|||++|+.+++.|.+|+|+||.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 589999999999999999999999999999998654
No 186
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=2.7e-07 Score=91.26 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++||+|||||+|||++|+.+++.|.+|+|+||...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 57999999999999999999999999999999764
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=98.69 E-value=1.8e-07 Score=92.49 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
.+|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3599999999999999999999999999999987
No 188
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=4.1e-07 Score=89.88 Aligned_cols=35 Identities=34% Similarity=0.377 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.++||+|||||+||+++|+.+++. .+|+|+||...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 468999999999999999999986 89999999864
No 189
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=2.4e-07 Score=90.91 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+||+|||+|.||+++|+.+ +.|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 47999999999999999999 89999999999753
No 190
>PLN02815 L-aspartate oxidase
Probab=98.68 E-value=2.5e-07 Score=90.93 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=32.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+||+|||+|.|||++|+.+++.| +|+|+||....
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 589999999999999999999999 99999998753
No 191
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.67 E-value=4.8e-07 Score=89.69 Aligned_cols=36 Identities=39% Similarity=0.558 Sum_probs=33.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||||.||+++|+.+++.|.+|+|+||....
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 579999999999999999999999999999998653
No 192
>PRK14727 putative mercuric reductase; Provisional
Probab=98.66 E-value=1.3e-07 Score=91.39 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.++||+||||||+|+++|..|++.|.+|+|+|++..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 368999999999999999999999999999998744
No 193
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.66 E-value=5.4e-07 Score=89.39 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=33.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+|+||+++|+.+++.|.+|+|+||....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 479999999999999999999999999999998643
No 194
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=5.2e-07 Score=89.05 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 57999999999999999999999999999999854
No 195
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=8.7e-07 Score=87.59 Aligned_cols=35 Identities=43% Similarity=0.536 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+||+|||||+|||++|+.+++.|.+|+|+||...
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 57999999999999999999999999999999753
No 196
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.62 E-value=4.6e-07 Score=85.55 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=70.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeec
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
.+.+|+|||||+||+.+|..|++.|. +|+|+++.+.....-. + +...+...
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-----~----------l~~~~~~~------------ 54 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-----P----------LSKSMLLE------------ 54 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-----C----------CCHHHHCC------------
Confidence 45699999999999999999999886 7999998865321100 0 11111000
Q ss_pred CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303 81 ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV 160 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 160 (409)
...+. .. ... .+++.+ .+++++.+++|+.++.+.. .+++.+|.++.+|.||.|+|.
T Consensus 55 ~~~~~---~~-------------~~~----~~~~~~--~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs 110 (396)
T PRK09754 55 DSPQL---QQ-------------VLP----ANWWQE--NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGA 110 (396)
T ss_pred CCccc---cc-------------cCC----HHHHHH--CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCC
Confidence 00000 00 000 112222 2789999999999987654 455678888999999999998
Q ss_pred ch
Q 015303 161 NS 162 (409)
Q Consensus 161 ~S 162 (409)
..
T Consensus 111 ~~ 112 (396)
T PRK09754 111 AA 112 (396)
T ss_pred CC
Confidence 75
No 197
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.62 E-value=3.6e-07 Score=88.99 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5899999999 9999999999999999999998753
No 198
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.61 E-value=1.2e-07 Score=91.46 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999999999999864
No 199
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.61 E-value=3.1e-07 Score=88.64 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
++|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4599999999999999999999999999999984
No 200
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.60 E-value=7e-07 Score=87.40 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+||+|||+|+||+++|+.+++. .+|+|+||....
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 58999999999999999999986 899999998653
No 201
>PTZ00058 glutathione reductase; Provisional
Probab=98.60 E-value=9.5e-08 Score=93.11 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
.+|||+||||||+|.++|..+++.|.+|+|||++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 3689999999999999999999999999999986
No 202
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.60 E-value=4.5e-07 Score=88.17 Aligned_cols=33 Identities=36% Similarity=0.452 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++||+|||+|.|||++|+.++ |.+|+|+||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 589999999999999999997 569999999875
No 203
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.60 E-value=3.4e-07 Score=89.89 Aligned_cols=37 Identities=24% Similarity=0.552 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.+++.|.+|+||||....
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3689999999999999999999999999999998653
No 204
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.59 E-value=6.3e-07 Score=85.68 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=70.5
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
+|+|||||++|+.+|..|++. +.+|+|+|+.+......++. +..+. + .. ...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~l---------------p~~~~--~-------~~--~~~ 56 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCAL---------------PYYIG--E-------VV--EDR 56 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCc---------------chhhc--C-------cc--CCH
Confidence 899999999999999999886 57999999987633222111 00000 0 00 000
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC-c--EEeccEEEecCCC
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG-T--ILKTKVLIGCDGV 160 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~--~~~ad~vV~AdG~ 160 (409)
. ..+ .+.. +.+.++ .+++++.+++|+.|+.++..+.+...++ + ++++|.||.|+|.
T Consensus 57 ~--~~~--------------~~~~----~~~~~~-~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs 115 (438)
T PRK13512 57 K--YAL--------------AYTP----EKFYDR-KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA 115 (438)
T ss_pred H--Hcc--------------cCCH----HHHHHh-CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC
Confidence 0 000 0111 222222 2789999999999998888777765432 2 4689999999997
Q ss_pred ch
Q 015303 161 NS 162 (409)
Q Consensus 161 ~S 162 (409)
..
T Consensus 116 ~~ 117 (438)
T PRK13512 116 SA 117 (438)
T ss_pred CC
Confidence 65
No 205
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.59 E-value=7.7e-07 Score=83.49 Aligned_cols=107 Identities=19% Similarity=0.307 Sum_probs=79.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+... ..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~~------ 181 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------------------------LM------ 181 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------------------------------hC------
Confidence 47999999999999999999999999999987542100 00
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch--
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS-- 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S-- 162 (409)
+ . -.+..+.+.|.+. +++++++++++.+..+++.+.+++.+|+++.||+||.|+|..+
T Consensus 182 -------~-------~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 182 -------P-------P----EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred -------C-------H----HHHHHHHHHHHhC--CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 0 0 0012344445432 7899999999999887777888899999999999999999855
Q ss_pred HHHhhhCCC
Q 015303 163 IVAKWLGFK 171 (409)
Q Consensus 163 ~vr~~l~~~ 171 (409)
.+.+..+..
T Consensus 242 ~l~~~~gl~ 250 (377)
T PRK04965 242 ALARRAGLA 250 (377)
T ss_pred HHHHHCCCC
Confidence 344444443
No 206
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.58 E-value=4e-07 Score=87.00 Aligned_cols=59 Identities=19% Similarity=0.071 Sum_probs=41.0
Q ss_pred HHHHHHHHhhC--CCceEEeCCeEEEEEEe--CCeEE-EEec-CCcEEeccEEEecCCCchHHHh
Q 015303 108 KLLLETLAKEL--PSGTIRYSSQVVSIEES--GHFKL-LHLA-DGTILKTKVLIGCDGVNSIVAK 166 (409)
Q Consensus 108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~--~~~v~-v~~~-~g~~~~ad~vV~AdG~~S~vr~ 166 (409)
..+.+.|.+.+ .+++|+++++|+++..+ ++.+. +... ++.+++++.||.|+|..+..+.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~ 187 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRD 187 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHH
Confidence 34556665544 37899999999999876 34433 3333 3347899999999998766443
No 207
>PRK12839 hypothetical protein; Provisional
Probab=98.56 E-value=3.9e-07 Score=89.54 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=34.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.|++.|.+|+|+||....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998653
No 208
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.56 E-value=1.4e-07 Score=86.44 Aligned_cols=148 Identities=17% Similarity=0.202 Sum_probs=74.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCcCCcccceeccccHH--HHHHHcCchhHHHhccccccceeeeec
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVTGFAFTVWTNAW--KALDAVGIGNSLRQQHQQLRSIVATPT 80 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~--~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
.+|+++||.||++|++|..|...+ .++..+|+.+....+. |+.+....+ .+|+.+ .....|.....+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dl------vt~~~P~s~~sflnY 74 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDL------VTLRDPTSPFSFLNY 74 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSS------STTT-TTSTTSHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCcccccccccc------CcCcCCCCcccHHHH
Confidence 489999999999999999999886 8999999998776554 222211000 111111 000011111111100
Q ss_pred --CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCC--ceEEeCCeEEEEEEeCC----eEEEEec----CCcE
Q 015303 81 --ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS--GTIRYSSQVVSIEESGH----FKLLHLA----DGTI 148 (409)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~----~v~v~~~----~g~~ 148 (409)
..+.. ..+- ......+.|..+.+++.-.+.. ..+.++++|++|+..++ .++|++. ++.+
T Consensus 75 L~~~~rl-~~f~--------~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~ 145 (341)
T PF13434_consen 75 LHEHGRL-YEFY--------NRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGET 145 (341)
T ss_dssp HHHTT-H-HHHH--------HH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEE
T ss_pred HHHcCCh-hhhh--------hcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeE
Confidence 01111 1110 0112246788888777665432 35999999999987754 4888884 3458
Q ss_pred EeccEEEecCCCchHHHhh
Q 015303 149 LKTKVLIGCDGVNSIVAKW 167 (409)
Q Consensus 149 ~~ad~vV~AdG~~S~vr~~ 167 (409)
+.|+-||.|+|....+-..
T Consensus 146 ~~ar~vVla~G~~P~iP~~ 164 (341)
T PF13434_consen 146 YRARNVVLATGGQPRIPEW 164 (341)
T ss_dssp EEESEEEE----EE---GG
T ss_pred EEeCeEEECcCCCCCCCcc
Confidence 9999999999955444333
No 209
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.56 E-value=3.8e-07 Score=88.45 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=32.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
|...|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 344689999999999999999999999999999973
No 210
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.55 E-value=1.5e-06 Score=86.00 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=30.3
Q ss_pred EEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 7 v~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+|||+|+|||++|+.+++.|.+|+|+||...
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 79999999999999999999999999999873
No 211
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.55 E-value=9.2e-07 Score=84.69 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=38.6
Q ss_pred CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHH
Q 015303 120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 165 (409)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr 165 (409)
+.+|+++++|+.|+.+++++.|++.+|++++||.||.|.......+
T Consensus 223 g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred CceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence 4589999999999999999999999999999999999888554433
No 212
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.55 E-value=1.5e-06 Score=92.35 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=34.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 3589999999999999999999999999999998754
No 213
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.55 E-value=8.8e-07 Score=85.11 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=68.7
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
+|+|||||++|+++|..|++.+ .+|+|||+++......++ +.. +......
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~---------------~~~-------------~~~~~~~ 53 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACG---------------LPY-------------FVGGFFD 53 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCC---------------Cce-------------EeccccC
Confidence 7999999999999999999875 589999998763211110 000 0000000
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec-CCcEEe--ccEEEecCCC
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA-DGTILK--TKVLIGCDGV 160 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-~g~~~~--ad~vV~AdG~ 160 (409)
.. .. .+.+ ..+.+.+ .+++++.+++|+.++.++..+.+... ++.+++ +|+||.|+|.
T Consensus 54 ~~--------------~~--~~~~--~~~~~~~--~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~ 113 (444)
T PRK09564 54 DP--------------NT--MIAR--TPEEFIK--SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA 113 (444)
T ss_pred CH--------------HH--hhcC--CHHHHHH--CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC
Confidence 00 00 0000 0122222 27899999999999888777777642 355566 9999999997
Q ss_pred ch
Q 015303 161 NS 162 (409)
Q Consensus 161 ~S 162 (409)
..
T Consensus 114 ~~ 115 (444)
T PRK09564 114 RP 115 (444)
T ss_pred CC
Confidence 64
No 214
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.53 E-value=7.2e-07 Score=85.95 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CCceEEEeCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESS 36 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~ 36 (409)
++|||+||||||+|..+|..+++. |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 579999999999999999999997 9999999984
No 215
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.52 E-value=6.9e-07 Score=86.06 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.||+||||||+|+.+|..|+++|.+|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 389999999999999999999999999999875
No 216
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.51 E-value=1e-06 Score=86.16 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+||+|||+|.||+++|+.+++ |.+|+|+||.+..
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~ 43 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK 43 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence 46899999999999999999974 9999999998653
No 217
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.51 E-value=5.2e-07 Score=88.41 Aligned_cols=36 Identities=28% Similarity=0.643 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+||+|||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36899999999 8999999999999999999998654
No 218
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=4e-07 Score=84.00 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=76.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcC---CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
++|+|||+|++|+..|.+|.+.- -.|.|+|++.. .|+|+.++...-..+ +++...-.....+-..-.++.+-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~---~G~GiaYs~~~p~~~--lNv~a~~mS~~~pD~p~~F~~WL 76 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN---FGQGIAYSTEEPEHL--LNVPAARMSAFAPDIPQDFVRWL 76 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc---cCCCccCCCCCchhh--hccccccccccCCCCchHHHHHH
Confidence 69999999999999999998842 23999999877 677777766332111 11110000000000000000000
Q ss_pred CCC--ccc-ccccccccccCCccceeccHHHHHHHHHh-------hCCCceE-EeCCeEEEEEEe--CCeEEEEecCCcE
Q 015303 82 SGK--PSS-ERSLKVQGKYGEHEMRCVRRKLLLETLAK-------ELPSGTI-RYSSQVVSIEES--GHFKLLHLADGTI 148 (409)
Q Consensus 82 ~~~--~~~-~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-------~~~~~~i-~~~~~v~~i~~~--~~~v~v~~~~g~~ 148 (409)
... ... ...+...+. . ...|..|-++|.+ ..+...+ +...+++++.+. ...+.++..+|.+
T Consensus 77 ~~~~~~~~d~~~~~~d~~--~----y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~ 150 (474)
T COG4529 77 QKQLQRYRDPEDINHDGQ--A----YPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPS 150 (474)
T ss_pred HhcccccCChhhcCCccc--c----ccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCe
Confidence 000 000 000111111 1 1223333333322 2222223 336677777766 5678899999999
Q ss_pred EeccEEEecCCCc
Q 015303 149 LKTKVLIGCDGVN 161 (409)
Q Consensus 149 ~~ad~vV~AdG~~ 161 (409)
..||.+|.|+|..
T Consensus 151 ~~ad~~Vlatgh~ 163 (474)
T COG4529 151 EIADIIVLATGHS 163 (474)
T ss_pred eeeeEEEEeccCC
Confidence 9999999999954
No 219
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.5e-07 Score=87.50 Aligned_cols=145 Identities=18% Similarity=0.238 Sum_probs=81.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-CCcccceeccccH----HHHHHHcC-chhHH-Hhcccccc
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-RVTGFAFTVWTNA----WKALDAVG-IGNSL-RQQHQQLR 73 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~----~~~l~~~g-l~~~~-~~~~~~~~ 73 (409)
|+..|||+|||||-||+-+|.+.+|.|.+++|+-.+... ...+|.-.+...+ .+..+.|| +.... +..+..+.
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence 566799999999999999999999999999999866431 2233332222211 12233332 11111 11111111
Q ss_pred ceeeeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCC--eEEEEecCCcE
Q 015303 74 SIVATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGH--FKLLHLADGTI 148 (409)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~--~v~v~~~~g~~ 148 (409)
+.+...|..+.. .-..++|....+.+.+.+ ++..++.+ .|.++..+++ .+.|.+.+|..
T Consensus 81 ---~LN~sKGPAVra------------~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~ 144 (621)
T COG0445 81 ---MLNSSKGPAVRA------------PRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPE 144 (621)
T ss_pred ---hccCCCcchhcc------------hhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCe
Confidence 111111111000 011244444444444433 46677665 4555555443 36788899999
Q ss_pred EeccEEEecCCCc
Q 015303 149 LKTKVLIGCDGVN 161 (409)
Q Consensus 149 ~~ad~vV~AdG~~ 161 (409)
+.|+.||.++|-.
T Consensus 145 ~~a~aVVlTTGTF 157 (621)
T COG0445 145 FHAKAVVLTTGTF 157 (621)
T ss_pred eecCEEEEeeccc
Confidence 9999999999975
No 220
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.51 E-value=1.1e-07 Score=91.66 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCC
Q 015303 108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGV 160 (409)
Q Consensus 108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~ 160 (409)
..+.+.|.+.+ .|++|+++++|++|..++++ ++++..+++.+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 44555565544 37999999999999988764 7888888877899999988776
No 221
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.50 E-value=7.1e-07 Score=82.32 Aligned_cols=152 Identities=19% Similarity=0.232 Sum_probs=83.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCc------ccceecccc-HH--HHHHHc----Cc-----------
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVT------GFAFTVWTN-AW--KALDAV----GI----------- 61 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------~~~~~~~~~-~~--~~l~~~----gl----------- 61 (409)
||+|||+|+|||++|+.|++. ++|+|+-|.+..... |-+..+.+. +. -..+.+ |+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999998 999999998754211 111112221 00 000111 11
Q ss_pred -----hhHHHhccccccceeeeecCCCCcccccccccccccCCccce---eccHHHHHHHHHhhC---CCceEEeCCeEE
Q 015303 62 -----GNSLRQQHQQLRSIVATPTISGKPSSERSLKVQGKYGEHEMR---CVRRKLLLETLAKEL---PSGTIRYSSQVV 130 (409)
Q Consensus 62 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~r~~l~~~L~~~~---~~~~i~~~~~v~ 130 (409)
.+.+...+.+++.- ..+ .+.+.-.+-+...-.. --.-..+.+.|.+.+ ++++++.++.+.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~-----~~g----~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~ 158 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRD-----EDG----RLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEAL 158 (518)
T ss_pred hHHHHHHHHHHcCCCCcCC-----CCC----ceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhh
Confidence 11222223222211 111 0111111100000000 012256667776665 589999999999
Q ss_pred EEEEeCC-eE-EEEe--cCC--cEEeccEEEecCCCchHHHhh
Q 015303 131 SIEESGH-FK-LLHL--ADG--TILKTKVLIGCDGVNSIVAKW 167 (409)
Q Consensus 131 ~i~~~~~-~v-~v~~--~~g--~~~~ad~vV~AdG~~S~vr~~ 167 (409)
++..+++ .+ -+.+ .++ .++.++.||.|+|.-+.+-+.
T Consensus 159 ~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~ 201 (518)
T COG0029 159 DLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY 201 (518)
T ss_pred hhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence 9887776 33 3333 323 368899999999988765433
No 222
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.49 E-value=3e-07 Score=90.60 Aligned_cols=37 Identities=30% Similarity=0.532 Sum_probs=34.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.+++.|.+|+|+||.+..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 4689999999999999999999999999999998754
No 223
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.49 E-value=3.6e-07 Score=94.30 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|||||||||++|..|++.|++|+|||+.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 46999999999999999999999999999998754
No 224
>PLN02546 glutathione reductase
Probab=98.49 E-value=6e-07 Score=87.63 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES 35 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
+|||+||||||+|..+|..+++.|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 225
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.48 E-value=9.3e-06 Score=76.37 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=52.8
Q ss_pred eeccHHHHHHHHHhhCC-CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 103 RCVRRKLLLETLAKELP-SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 103 ~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
..++...+...|.+.+. +++++++++|++++.+++.+.|++.+|.+++||.||.|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 35677888888887664 68999999999999888889999988888999999999999985
No 226
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.47 E-value=8.7e-07 Score=85.30 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|+||||||+|+++|..|++.|.+|+|+|++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 899999999999999999999999999998753
No 227
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.46 E-value=2.4e-06 Score=84.18 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHH----HcCCceEEEeCCCCc
Q 015303 6 DIVIVGAGIAGLTTSLGLY----RLGIRSMVLESSESL 39 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~----~~g~~V~v~E~~~~~ 39 (409)
||+|||||.|||++|+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 679999999998653
No 228
>PRK07208 hypothetical protein; Provisional
Probab=98.46 E-value=2.2e-07 Score=90.16 Aligned_cols=39 Identities=38% Similarity=0.589 Sum_probs=36.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
||++.||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~ 39 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV 39 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 788899999999999999999999999999999998754
No 229
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.46 E-value=1.1e-06 Score=86.73 Aligned_cols=36 Identities=28% Similarity=0.545 Sum_probs=33.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+|++|+++|+.+++.|.+|+|+||....
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999997653
No 230
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.46 E-value=3e-06 Score=77.32 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=38.7
Q ss_pred CceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchH
Q 015303 120 SGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
+++++|+++|.+|+..++. ..+.+.+|.++.+|.||.|-|+.+.
T Consensus 187 G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 187 GGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred CcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 6899999999999988764 6778889989999999999997663
No 231
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.45 E-value=1.3e-06 Score=86.51 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+|||+||||||+|.++|..+++.|.+|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999975
No 232
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.44 E-value=1.2e-06 Score=75.88 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=88.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcCCc---------ccceeccccHHHHH---HHcC-chhHHHh
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLRVT---------GFAFTVWTNAWKAL---DAVG-IGNSLRQ 67 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~---------~~~~~~~~~~~~~l---~~~g-l~~~~~~ 67 (409)
.+||++|||||++|++.|..|.-+ +.+|.|+|+......+ ..|+.+.|.+++.= +-.. +.+...+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e 126 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE 126 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence 469999999999999999999766 8999999998754211 13555666554320 0000 1111111
Q ss_pred ccccc------------------------------cceeeeecCCCCcccccc--cccccccCCccceeccHHHHHHHHH
Q 015303 68 QHQQL------------------------------RSIVATPTISGKPSSERS--LKVQGKYGEHEMRCVRRKLLLETLA 115 (409)
Q Consensus 68 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~r~~l~~~L~ 115 (409)
...+. .++.+.... .+.++. ......-..+...+++-..+...+.
T Consensus 127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~---ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ 203 (453)
T KOG2665|consen 127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGS---EIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFG 203 (453)
T ss_pred cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccc---hhhhcChhhhhhhhhcCCCcceeehHHHHHHHH
Confidence 11111 122221110 000000 0000000011122344445544444
Q ss_pred hhC--CCceEEeCCeEEEEEEeCCe-----EEEEecCCcEEeccEEEecCCCchHH
Q 015303 116 KEL--PSGTIRYSSQVVSIEESGHF-----KLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 116 ~~~--~~~~i~~~~~v~~i~~~~~~-----v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
+.+ .+.++..+-++..+.+..+. ++|.-..+++++++++|.|+|..|--
T Consensus 204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr 259 (453)
T KOG2665|consen 204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDR 259 (453)
T ss_pred HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhH
Confidence 433 26789999999999876542 44544456789999999999987754
No 233
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.42 E-value=1.3e-06 Score=89.20 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 36899999999999999999999999999998865
No 234
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.42 E-value=2.9e-06 Score=88.09 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999864
No 235
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.42 E-value=7.1e-07 Score=85.58 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++|||+|||+||+|..+|. ++.|.+|+|+|++.
T Consensus 1 ~~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CCcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 3699999999999988864 45799999999864
No 236
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.41 E-value=2.1e-06 Score=75.47 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=38.8
Q ss_pred ceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHHH
Q 015303 121 GTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIVA 165 (409)
Q Consensus 121 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr 165 (409)
.+|..++.|+.|..-.+++.++..+|++-++|-+|.|+-..-.++
T Consensus 232 ~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~ 276 (447)
T COG2907 232 GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALA 276 (447)
T ss_pred ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHH
Confidence 358899999999999999999999999889999999987665443
No 237
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.40 E-value=4e-06 Score=80.98 Aligned_cols=99 Identities=21% Similarity=0.328 Sum_probs=75.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... +..+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------- 217 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------LDDE-------------------- 217 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------CCHH--------------------
Confidence 58999999999999999999999999999987532100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
.+..+.+.|.+. +++++.+++|+.++.+++.+.+++.+++++++|.||.|+|.....
T Consensus 218 ---------------------~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 218 ---------------------ISDALSYHLRDS--GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred ---------------------HHHHHHHHHHHc--CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 012344444433 799999999999987777788888888889999999999987654
No 238
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.39 E-value=3.4e-06 Score=79.19 Aligned_cols=107 Identities=14% Similarity=0.245 Sum_probs=66.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.+|+|||||+||+.+|..|++.+ .+|+|+++++........ +...+ . .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~---------------l~~~~-------------~--~ 52 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD---------------LSHVF-------------S--Q 52 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc---------------CcHHH-------------h--C
Confidence 49999999999999999998854 589999988753221100 00000 0 0
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
+..... +.+... +.+.+.. +++++.+++|++++.+... +++ ++.++.+|.||.|+|...
T Consensus 53 ~~~~~~----------------~~~~~~-~~~~~~~-gv~~~~~~~V~~id~~~~~--v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 53 GQRADD----------------LTRQSA-GEFAEQF-NLRLFPHTWVTDIDAEAQV--VKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred CCCHHH----------------hhcCCH-HHHHHhC-CCEEECCCEEEEEECCCCE--EEE-CCeEEeCCEEEECCCCCC
Confidence 000000 000001 1222222 7899999999999876553 333 556799999999999764
No 239
>PRK07846 mycothione reductase; Reviewed
Probab=98.38 E-value=8e-07 Score=85.17 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=27.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+||++||||||+|..+|.. +.|.+|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988865 4699999999864
No 240
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.38 E-value=3.1e-06 Score=88.62 Aligned_cols=35 Identities=34% Similarity=0.595 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+||+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 57999999999999999999999999999999866
No 241
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.38 E-value=3e-06 Score=81.82 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+|||+||||||+|+.+|..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 242
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.37 E-value=5.8e-06 Score=79.83 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=74.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+.+. +..++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~~------------------- 215 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------EDKEI------------------- 215 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------CCHHH-------------------
Confidence 47999999999999999999999999999987542100 00000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEEEecCCCc
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~vV~AdG~~ 161 (409)
...+.+.|.+. +++++.+++|+.++.+++.+.+.+.++ +++.+|.||.|.|..
T Consensus 216 ----------------------~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 216 ----------------------SKLAERALKKR--GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred ----------------------HHHHHHHHHHc--CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 12334444433 799999999999988777787877665 579999999999976
Q ss_pred hHH
Q 015303 162 SIV 164 (409)
Q Consensus 162 S~v 164 (409)
...
T Consensus 272 p~~ 274 (462)
T PRK06416 272 PNT 274 (462)
T ss_pred cCC
Confidence 543
No 243
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.34 E-value=2.8e-06 Score=82.53 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=35.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR 40 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
..++||+|||||.|||.+|+.+++.|++|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 356899999999999999999999999999999986543
No 244
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.33 E-value=7.7e-06 Score=77.27 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=72.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. . . .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~-~--------------------~-- 185 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------------N-A--------------------P-- 185 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------------h-c--------------------C--
Confidence 47999999999999999999999999999987531100 0 0 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
. .....+.+.+.+ .++++++++++++++. ++.+.+++.+|+++.||+||.|.|....
T Consensus 186 ---------------~----~~~~~l~~~l~~--~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 186 ---------------P----PVQRYLLQRHQQ--AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred ---------------H----HHHHHHHHHHHH--CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 0 001123333433 2799999999999976 5567788889989999999999998654
No 245
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=7.6e-07 Score=85.15 Aligned_cols=37 Identities=30% Similarity=0.660 Sum_probs=34.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++.+|+|||||+|||+||..|.+.|++|+|+|.++.+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3579999999999999999999999999999998864
No 246
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.29 E-value=3e-06 Score=72.45 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=82.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC------CceEEEeCCCCcC-Ccccceec-----cccHHHHHHHc------CchhH
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLG------IRSMVLESSESLR-VTGFAFTV-----WTNAWKALDAV------GIGNS 64 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g------~~V~v~E~~~~~~-~~~~~~~~-----~~~~~~~l~~~------gl~~~ 64 (409)
...+|+|||||+.|.++|++|++++ +.|+++|+..... ..|.+.++ .+....-|..+ +|.++
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 3468999999999999999999988 8899999876431 11111110 01001111111 22333
Q ss_pred HHhc-cccccceeeeecC-------CCCccccccccccc-------ccCCccceeccHHHHHHHHHhhCC---CceEEeC
Q 015303 65 LRQQ-HQQLRSIVATPTI-------SGKPSSERSLKVQG-------KYGEHEMRCVRRKLLLETLAKELP---SGTIRYS 126 (409)
Q Consensus 65 ~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~ 126 (409)
+... ...++....+... .++....+++-... ........+++...|...+++++. ++++.++
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G 168 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG 168 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence 3221 1111111111100 01111111111100 011223346888999999988773 4788887
Q ss_pred CeEEEEEEeCCeEE-EEec---C-CcEEeccEEEecCCCchH
Q 015303 127 SQVVSIEESGHFKL-LHLA---D-GTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 127 ~~v~~i~~~~~~v~-v~~~---~-g~~~~ad~vV~AdG~~S~ 163 (409)
+|..+..+.+++. +... + ......+.+|.+.|.|+.
T Consensus 169 -kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 169 -KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred -eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 4666653333321 1111 1 224678899999999974
No 247
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.29 E-value=3.2e-06 Score=75.24 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=34.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
+|||+||||||.|-.+|+..++.|++.+.+|++...
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 589999999999999999999999999999998764
No 248
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.28 E-value=5.2e-06 Score=84.99 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHc----CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhcccccccee
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIV 76 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~----g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
|+ +.+|+|||+|+||+.+|..|.++ +++|+||++.+.+..... .+...+.
T Consensus 1 m~-~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~---------------~L~~~~~---------- 54 (847)
T PRK14989 1 MS-KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV---------------HLSSYFS---------- 54 (847)
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC---------------cchHhHc----------
Confidence 54 35999999999999999999764 479999999877432211 1111110
Q ss_pred eeecCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEe
Q 015303 77 ATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIG 156 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 156 (409)
+.....+. +.. .+++.+ .+++++.+++|+.++.+.. .|++.+|.++.+|.||.
T Consensus 55 ------~~~~~~l~--------------~~~---~~~~~~--~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVI 107 (847)
T PRK14989 55 ------HHTAEELS--------------LVR---EGFYEK--HGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIM 107 (847)
T ss_pred ------CCCHHHcc--------------CCC---HHHHHh--CCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEE
Confidence 00000000 000 122222 3789999999999977543 56677888899999999
Q ss_pred cCCCch
Q 015303 157 CDGVNS 162 (409)
Q Consensus 157 AdG~~S 162 (409)
|+|...
T Consensus 108 ATGs~p 113 (847)
T PRK14989 108 ATGSYP 113 (847)
T ss_pred CCCCCc
Confidence 999754
No 249
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.28 E-value=7.1e-06 Score=78.16 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++.+|||||||.||+.+|..|.+.+.+|+|||+++.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 356999999999999999999877899999998764
No 250
>PRK07846 mycothione reductase; Reviewed
Probab=98.28 E-value=1.3e-05 Score=76.91 Aligned_cols=98 Identities=27% Similarity=0.373 Sum_probs=73.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. +..+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~-------------------- 208 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------LDDD-------------------- 208 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHH--------------------
Confidence 58999999999999999999999999999986531000 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
+ +..+.+ +.+ .+++++.++++++++.+++.+.+++.+++++.+|.||.|+|.....
T Consensus 209 --------------------~-~~~l~~-l~~--~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 209 --------------------I-SERFTE-LAS--KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred --------------------H-HHHHHH-HHh--cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 0 112222 222 2689999999999987777788888888899999999999986543
No 251
>PRK06116 glutathione reductase; Validated
Probab=98.27 E-value=1.2e-05 Score=77.38 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=74.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++++.+.+... ...+
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~-------------------- 209 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------FDPD-------------------- 209 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------cCHH--------------------
Confidence 58999999999999999999999999999987542100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
.+..+.+.|.+ .+++++++++|++++.++++ +.+++.+|+++.+|.||.|.|....
T Consensus 210 ---------------------~~~~l~~~L~~--~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 210 ---------------------IRETLVEEMEK--KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred ---------------------HHHHHHHHHHH--CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 01233444443 27999999999999876554 7788888888999999999997654
Q ss_pred H
Q 015303 164 V 164 (409)
Q Consensus 164 v 164 (409)
.
T Consensus 267 ~ 267 (450)
T PRK06116 267 T 267 (450)
T ss_pred C
Confidence 3
No 252
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.26 E-value=1.8e-06 Score=88.17 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.++|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 46999999999999999999999999999998644
No 253
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.26 E-value=5.1e-06 Score=77.63 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=65.6
Q ss_pred cEEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
+|+|||||+||+.+|..|+++ +.+|+|||+++....... +. .+.. + . ..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~----------------~~-~~~~------g--~---~~ 52 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM----------------LP-GMIA------G--H---YS 52 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch----------------hh-HHHh------e--e---CC
Confidence 489999999999999999643 689999998765221110 00 0000 0 0 00
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
. ..+ .. .+.+.+.+ .+++++.+ +|++++.++. +|.+.+|+++++|+||.|+|...
T Consensus 53 ~---~~~--------------~~---~~~~~~~~--~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 53 L---DEI--------------RI---DLRRLARQ--AGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred H---HHh--------------cc---cHHHHHHh--cCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 0 000 00 11122221 26787765 7999987765 56677888899999999999764
Q ss_pred H
Q 015303 163 I 163 (409)
Q Consensus 163 ~ 163 (409)
.
T Consensus 108 ~ 108 (364)
T TIGR03169 108 P 108 (364)
T ss_pred C
Confidence 3
No 254
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.25 E-value=2.1e-05 Score=68.93 Aligned_cols=35 Identities=34% Similarity=0.661 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+||+|||+|+|||.+|..|+.+|.+|+|+|+...
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 58999999999999999999999999999998764
No 255
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.25 E-value=1.4e-05 Score=76.99 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=75.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+++|||||..|+-+|..|++.|.+|+++++.+.+.... ..+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~------------------d~~-------------------- 219 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE------------------DAD-------------------- 219 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC------------------CHH--------------------
Confidence 479999999999999999999999999999765421100 000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
.+..+.+.|.+. +++++.+++++.++.+++++.+.+.+|+++.+|.||.|.|.....
T Consensus 220 ---------------------~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 220 ---------------------AAEVLEEVFARR--GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ---------------------HHHHHHHHHHHC--CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 012334444433 799999999999987777788888888889999999999986554
No 256
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.2e-06 Score=81.76 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=33.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRV 41 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~ 41 (409)
++|+|+|||+|||++|+.|+++|++|+|+|+++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 3799999999999999999999999999999987543
No 257
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.2e-06 Score=72.45 Aligned_cols=108 Identities=27% Similarity=0.409 Sum_probs=70.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEE-eCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVL-ESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~-E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.|||+||||||||.++|++.+|+|++.-|+ ||- | | +.|+.+++..- +.+- .
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf------G-G--------QvldT~~IENf----------Isv~--~- 262 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF------G-G--------QVLDTMGIENF----------ISVP--E- 262 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh------C-C--------eeccccchhhe----------eccc--c-
Confidence 599999999999999999999999875443 221 1 0 22223322110 0000 0
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEe---CCeEEEEecCCcEEeccEEEec
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEES---GHFKLLHLADGTILKTKVLIGC 157 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~---~~~v~v~~~~g~~~~ad~vV~A 157 (409)
..-.+|...|.+..+ ++++....+.++++.. ++-.+|++.+|-.++++-||.+
T Consensus 263 ----------------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIls 320 (520)
T COG3634 263 ----------------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILA 320 (520)
T ss_pred ----------------------ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEe
Confidence 111344555555443 4666666667777664 4568999999999999999999
Q ss_pred CCCc
Q 015303 158 DGVN 161 (409)
Q Consensus 158 dG~~ 161 (409)
+|+.
T Consensus 321 tGAr 324 (520)
T COG3634 321 TGAR 324 (520)
T ss_pred cCcc
Confidence 9963
No 258
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.19 E-value=3.2e-05 Score=73.16 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=76.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
+..++|||||+.|+=.|..+++.|.+|+|+|+.+.+-+. ..+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~------------------~D~ei------------------ 216 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG------------------EDPEI------------------ 216 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc------------------CCHHH------------------
Confidence 347999999999999999999999999999988662221 00000
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc--EEeccEEEecCCCc
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT--ILKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~--~~~ad~vV~AdG~~ 161 (409)
+..+.+.|.+ .+++++.+++++.++..++++.+++++++ ++++|.|+.|.|+.
T Consensus 217 -----------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 217 -----------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred -----------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 1234455544 47899999999999988877888888876 78999999999965
Q ss_pred hH
Q 015303 162 SI 163 (409)
Q Consensus 162 S~ 163 (409)
..
T Consensus 272 Pn 273 (454)
T COG1249 272 PN 273 (454)
T ss_pred cC
Confidence 43
No 259
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.19 E-value=9e-06 Score=83.14 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=68.0
Q ss_pred EEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 7 IVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 7 v~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
|+|||||+||+.+|..|.+. +++|+|||+.+.+..... .+.. +.. + ..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~---------------~L~~-~l~-g-----------~~- 51 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI---------------LLSS-VLQ-G-----------EA- 51 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc---------------cccH-HHC-C-----------CC-
Confidence 68999999999999998775 479999998876432111 0110 000 0 00
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
....+.+ .. .+++.+ .+++++.+++|+.|+.+.. .|++.+|.++.+|.||.|+|...
T Consensus 52 -~~~~l~~--------------~~---~~~~~~--~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 52 -DLDDITL--------------NS---KDWYEK--HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred -CHHHccC--------------CC---HHHHHH--CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence 0000000 00 122222 3799999999999987654 56677888899999999999754
No 260
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.18 E-value=2.4e-06 Score=74.53 Aligned_cols=36 Identities=36% Similarity=0.602 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+++||+|||||+||+++|+.|.++|.++.|+-++..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 369999999999999999999999999999998764
No 261
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.18 E-value=2.2e-05 Score=75.26 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=71.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+... ...+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~-------------------- 199 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------EEPS-------------------- 199 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------CCHH--------------------
Confidence 47999999999999999999999999999987542100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
+ +..+.+.|.+. +++++.+++|+.++.+++.+.++. +++++.+|.||.|.|....
T Consensus 200 --------------------~-~~~~~~~l~~~--GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 200 --------------------V-AALAKQYMEED--GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPN 254 (438)
T ss_pred --------------------H-HHHHHHHHHHc--CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCC
Confidence 0 11233444332 789999999999987666666654 4567999999999997654
No 262
>PLN02507 glutathione reductase
Probab=98.17 E-value=3e-05 Score=75.26 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=74.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+-.. +..+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~-------------------- 245 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------FDDE-------------------- 245 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------cCHH--------------------
Confidence 47999999999999999999999999999976431100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
.+..+.+.|.+. +++++.+++|++++.+++++.+.+.+++++.+|.|+.|.|.....
T Consensus 246 ---------------------~~~~l~~~l~~~--GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 246 ---------------------MRAVVARNLEGR--GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred ---------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 012334445433 799999999999987777788888888889999999999976543
No 263
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.16 E-value=9.4e-05 Score=63.89 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcC-------CceEEEeCCCCcC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLG-------IRSMVLESSESLR 40 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g-------~~V~v~E~~~~~~ 40 (409)
..+|+|||+|..||++|..+.+.+ .+|+|++.+..+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 469999999999999998888744 5799999876653
No 264
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=4.7e-06 Score=76.19 Aligned_cols=144 Identities=22% Similarity=0.247 Sum_probs=79.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC-CcCCcccceeccccHH----HHHHHcCchhHHHhccccccceee
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE-SLRVTGFAFTVWTNAW----KALDAVGIGNSLRQQHQQLRSIVA 77 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~~~~~~ 77 (409)
.+|||+|||||-||+-+|.+.++.|-+.+|+-.+- .....+|.-.+..-+. +..+.++ -+-.......++.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd---Gl~~rvcD~s~vq~ 103 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD---GLCSRVCDQSGVQY 103 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc---chHhhhhhhhhhhH
Confidence 46899999999999999999999999988887653 2233333333222111 1122221 11111111111111
Q ss_pred e--ecCCCCcccccccccccccCCccceeccHHHHHHHHHhhC---CCceEEeCCeEEEEEEeCC-----eEEEEecCCc
Q 015303 78 T--PTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKEL---PSGTIRYSSQVVSIEESGH-----FKLLHLADGT 147 (409)
Q Consensus 78 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~-----~v~v~~~~g~ 147 (409)
. +...|.. . ...-..++|+.+...+.+++ ++..|+.+.-..-+..+++ ..-|.+.||.
T Consensus 104 k~LNrs~GPA--V----------wg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt 171 (679)
T KOG2311|consen 104 KVLNRSKGPA--V----------WGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGT 171 (679)
T ss_pred HHhhccCCCc--c----------cChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCc
Confidence 1 1111111 0 01112577777777777665 4456665533333333332 2446678899
Q ss_pred EEeccEEEecCCCc
Q 015303 148 ILKTKVLIGCDGVN 161 (409)
Q Consensus 148 ~~~ad~vV~AdG~~ 161 (409)
.+.++-||..+|-+
T Consensus 172 ~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 172 VVYAESVILTTGTF 185 (679)
T ss_pred EeccceEEEeeccc
Confidence 99999999999965
No 265
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.15 E-value=2.7e-05 Score=74.72 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=73.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+++.+.+... +.++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~-------------------- 208 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------FDDD-------------------- 208 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------cCHH--------------------
Confidence 47999999999999999999999999999976442000 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
+ +..+.+.|.+. +++++.+++|+.++.+++.+.+++.+++++.+|.||.|.|....
T Consensus 209 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 209 --------------------M-RALLARNMEGR--GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred --------------------H-HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 0 12233444432 79999999999998777777788888888999999999997654
No 266
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.14 E-value=2.8e-06 Score=78.45 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=32.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+||+|||||++|+++|..|++.|.+|+|+|+++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 6999999999999999999999999999999753
No 267
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.13 E-value=2.8e-06 Score=82.76 Aligned_cols=35 Identities=40% Similarity=0.600 Sum_probs=33.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999999754
No 268
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.12 E-value=4.4e-05 Score=73.29 Aligned_cols=99 Identities=23% Similarity=0.254 Sum_probs=73.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. +..+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~d~~-------------------- 208 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------FDSM-------------------- 208 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------cCHH--------------------
Confidence 58999999999999999999999999999987441110 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCC-cEEeccEEEecCCCch
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADG-TILKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g-~~~~ad~vV~AdG~~S 162 (409)
.+..+.+.|.+. +++++.+++++.++.+++. +.+++.++ +.+.+|.||.|.|...
T Consensus 209 ---------------------~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 209 ---------------------ISETITEEYEKE--GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred ---------------------HHHHHHHHHHHc--CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence 012344455433 7899999999999876443 67777777 5799999999999765
Q ss_pred HH
Q 015303 163 IV 164 (409)
Q Consensus 163 ~v 164 (409)
..
T Consensus 266 n~ 267 (450)
T TIGR01421 266 NT 267 (450)
T ss_pred Cc
Confidence 54
No 269
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.11 E-value=5e-05 Score=73.38 Aligned_cols=99 Identities=23% Similarity=0.297 Sum_probs=71.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+. ...+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~d~~-------------------- 214 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------EDAE-------------------- 214 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------cCHH--------------------
Confidence 48999999999999999999999999999965431110 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec--CCc--EEeccEEEecCCC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA--DGT--ILKTKVLIGCDGV 160 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~--~~~ad~vV~AdG~ 160 (409)
+ +..+.+.|.+. +++++.+++|+.++.+++.+.+++. +|+ ++.+|.||.|.|.
T Consensus 215 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 215 --------------------V-SKEIAKQYKKL--GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred --------------------H-HHHHHHHHHHC--CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 0 12233445433 8999999999999877666666554 553 6999999999997
Q ss_pred chHH
Q 015303 161 NSIV 164 (409)
Q Consensus 161 ~S~v 164 (409)
....
T Consensus 272 ~pn~ 275 (466)
T PRK07818 272 APRV 275 (466)
T ss_pred ccCC
Confidence 6543
No 270
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=5.9e-05 Score=72.71 Aligned_cols=99 Identities=17% Similarity=0.275 Sum_probs=71.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. .. .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----------------------------------~~---d-- 210 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----------------------------------GE---D-- 210 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----------------------------------cc---c--
Confidence 4799999999999999999999999999998754100 00 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC-cEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~~~ad~vV~AdG~~S~ 163 (409)
.. + +..+.+.|.+. +++++++++|+.++.++..+.+...++ .++.+|.||.|+|....
T Consensus 211 ---------------~e---~-~~~l~~~L~~~--GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 ---------------ED---I-AHILREKLEND--GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred ---------------HH---H-HHHHHHHHHHC--CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 00 0 12344455433 899999999999987666555554322 36899999999997765
Q ss_pred H
Q 015303 164 V 164 (409)
Q Consensus 164 v 164 (409)
+
T Consensus 270 ~ 270 (458)
T PRK06912 270 V 270 (458)
T ss_pred C
Confidence 4
No 271
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.09 E-value=9.1e-06 Score=73.28 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=92.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCCcCCcccceeccccHH--HHHHHcCchhHHHhccccccceee
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSESLRVTGFAFTVWTNAW--KALDAVGIGNSLRQQHQQLRSIVA 77 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~--~~l~~~gl~~~~~~~~~~~~~~~~ 77 (409)
|+..+|++.||-||.-|.+|+.|...+ +++..+||.+....++. ..+...++ .+++.| ..-..|.....+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-mllegstlQv~FlkDL------VTl~~PTs~ySF 74 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-MLLEGSTLQVPFLKDL------VTLVDPTSPYSF 74 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-cccCCccccccchhhh------ccccCCCCchHH
Confidence 556799999999999999999999876 78999999999877753 32322111 112221 111111111111
Q ss_pred eec-CCCCcccccccccccccCCccceeccHHHHHHHHHhhCCC-ceEEeCCeEEEEEEeC-C-eEE--EEecCCcEEec
Q 015303 78 TPT-ISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPS-GTIRYSSQVVSIEESG-H-FKL--LHLADGTILKT 151 (409)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~-~-~v~--v~~~~g~~~~a 151 (409)
.+. ....++..+ .......+.|.++.+++.-.+.. -.++|+.+|++|...+ + ... +.+.++++++|
T Consensus 75 LNYL~~h~RLy~F--------l~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~a 146 (436)
T COG3486 75 LNYLHEHGRLYEF--------LNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRA 146 (436)
T ss_pred HHHHHHcchHhhh--------hhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEe
Confidence 110 000111111 12334468898888888765533 4788999999774332 2 233 66677778999
Q ss_pred cEEEecCCCchHH
Q 015303 152 KVLIGCDGVNSIV 164 (409)
Q Consensus 152 d~vV~AdG~~S~v 164 (409)
+-||...|..-.+
T Consensus 147 r~lVlg~G~~P~I 159 (436)
T COG3486 147 RNLVLGVGTQPYI 159 (436)
T ss_pred eeEEEccCCCcCC
Confidence 9999999976544
No 272
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.09 E-value=3.6e-05 Score=71.08 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=67.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+.+|||||||.+|+.+|..|.+.- .+|+|+|++..-...+ . +. ++ .
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-----------l-----L~-ev---------------a 50 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-----------L-----LY-EV---------------A 50 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-----------h-----hh-hh---------------h
Confidence 459999999999999999999974 8999999987622111 0 00 00 0
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.+.. +.. ... ..+...+ +...++++..+ +|++|+.++.. |++.++..+.+|++|.|.|..
T Consensus 51 ~g~l----~~~---------~i~---~p~~~~~-~~~~~v~~~~~-~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs~ 110 (405)
T COG1252 51 TGTL----SES---------EIA---IPLRALL-RKSGNVQFVQG-EVTDIDRDAKK--VTLADLGEISYDYLVVALGSE 110 (405)
T ss_pred cCCC----Chh---------hee---ccHHHHh-cccCceEEEEE-EEEEEcccCCE--EEeCCCccccccEEEEecCCc
Confidence 1000 000 000 0122222 22224666654 79999888774 555666679999999999986
Q ss_pred hH
Q 015303 162 SI 163 (409)
Q Consensus 162 S~ 163 (409)
..
T Consensus 111 ~~ 112 (405)
T COG1252 111 TN 112 (405)
T ss_pred CC
Confidence 54
No 273
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.09 E-value=3.7e-06 Score=86.39 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 369999999999999999999999999999998653
No 274
>PRK06370 mercuric reductase; Validated
Probab=98.08 E-value=4.8e-05 Score=73.45 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=70.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... ...+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~~~~-------------------- 213 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------EDED-------------------- 213 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------cCHH--------------------
Confidence 58999999999999999999999999999987542100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEe--cC-CcEEeccEEEecCCCc
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHL--AD-GTILKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~--~~-g~~~~ad~vV~AdG~~ 161 (409)
+ +..+.+.|.+ .+++++++++|+.++.+++.+.+.+ .+ +.++.+|.||.|.|..
T Consensus 214 --------------------~-~~~l~~~l~~--~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 214 --------------------V-AAAVREILER--EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred --------------------H-HHHHHHHHHh--CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 0 1223344433 3799999999999988766655444 23 3479999999999976
Q ss_pred hH
Q 015303 162 SI 163 (409)
Q Consensus 162 S~ 163 (409)
..
T Consensus 271 pn 272 (463)
T PRK06370 271 PN 272 (463)
T ss_pred cC
Confidence 54
No 275
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.07 E-value=3.5e-05 Score=73.63 Aligned_cols=97 Identities=23% Similarity=0.358 Sum_probs=70.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++++.+.+... .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----------------------------------~------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----------------------------------L------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc----------------------------------c-------
Confidence 48999999999999999999999999999987542000 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
++ .. + +..+.+.|.+. +++++++++|+.++.++. + +.+.+|+++.+|.||.|+|....
T Consensus 177 ----~~---------~~---~-~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 177 ----FD---------EE---M-NQIVEEELKKH--EINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred ----cC---------HH---H-HHHHHHHHHHc--CCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 00 00 0 12334444432 789999999999976543 3 55677888999999999998643
No 276
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=5.7e-05 Score=73.14 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=69.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+. . .
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-----------------------------------~---~-- 220 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-----------------------------------E---D-- 220 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-----------------------------------C---C--
Confidence 58999999999999999999999999999987542000 0 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEE--eCCeEEEEecCCc--EEeccEEEecCCC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEE--SGHFKLLHLADGT--ILKTKVLIGCDGV 160 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~--~~~ad~vV~AdG~ 160 (409)
. .+ ...+.+.|.+. +++++.+++|+.++. .++...+.+.+|+ ++.+|.||.|.|.
T Consensus 221 ---------------~---~~-~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~ 279 (472)
T PRK05976 221 ---------------A---EL-SKEVARLLKKL--GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR 279 (472)
T ss_pred ---------------H---HH-HHHHHHHHHhc--CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC
Confidence 0 00 12233444332 799999999999975 3333334455663 6899999999997
Q ss_pred chH
Q 015303 161 NSI 163 (409)
Q Consensus 161 ~S~ 163 (409)
...
T Consensus 280 ~p~ 282 (472)
T PRK05976 280 RPN 282 (472)
T ss_pred ccC
Confidence 654
No 277
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.06 E-value=1.7e-05 Score=69.02 Aligned_cols=34 Identities=32% Similarity=0.581 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.|+|||+|+|||+++..+...|-.|+++|+....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 6999999999999999999988779999998754
No 278
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=6.9e-05 Score=72.57 Aligned_cols=99 Identities=22% Similarity=0.290 Sum_probs=72.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... ...+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------- 225 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------ADEQ-------------------- 225 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------CCHH--------------------
Confidence 58999999999999999999999999999987531100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC--C--cEEeccEEEecCCC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD--G--TILKTKVLIGCDGV 160 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~--g--~~~~ad~vV~AdG~ 160 (409)
+ +..+.+.|.+ .+++++.+++|+.++.+++.+.+.+.+ | .++.+|.||.|.|.
T Consensus 226 --------------------~-~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 226 --------------------V-AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred --------------------H-HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 0 1223334433 379999999999998877777776654 3 36899999999997
Q ss_pred chHH
Q 015303 161 NSIV 164 (409)
Q Consensus 161 ~S~v 164 (409)
....
T Consensus 283 ~p~~ 286 (475)
T PRK06327 283 VPNT 286 (475)
T ss_pred ccCC
Confidence 6553
No 279
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.05 E-value=5.8e-05 Score=72.93 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+. ...+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------- 208 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------EEPE-------------------- 208 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------cCHH--------------------
Confidence 58999999999999999999999999999987542100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecC---CcEEeccEEEecCCCc
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLAD---GTILKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~---g~~~~ad~vV~AdG~~ 161 (409)
+ +..+.+.|.+ .+++++++++|+.++.+++.+.+++.+ ++++.+|.||.|.|..
T Consensus 209 --------------------~-~~~l~~~l~~--~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 209 --------------------I-SAAVEEALAE--EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred --------------------H-HHHHHHHHHH--cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCC
Confidence 0 1223344433 279999999999998776665555532 3579999999999975
Q ss_pred hH
Q 015303 162 SI 163 (409)
Q Consensus 162 S~ 163 (409)
..
T Consensus 266 p~ 267 (463)
T TIGR02053 266 PN 267 (463)
T ss_pred cC
Confidence 54
No 280
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.02 E-value=6.9e-05 Score=72.32 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=70.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+. . .
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-----------------------------------~---d-- 214 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-----------------------------------T---D-- 214 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----------------------------------C---C--
Confidence 58999999999999999999999999999986442000 0 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---C--CcEEeccEEEecCC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---D--GTILKTKVLIGCDG 159 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~--g~~~~ad~vV~AdG 159 (409)
. -.+..+.+.|.+. +++++.+++|+.++.+++.+.+++. + ++++.+|.||.|.|
T Consensus 215 ------~-------------~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 273 (466)
T PRK06115 215 ------T-------------ETAKTLQKALTKQ--GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIG 273 (466)
T ss_pred ------H-------------HHHHHHHHHHHhc--CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccC
Confidence 0 0012233444432 7999999999999876666655543 2 24799999999999
Q ss_pred CchH
Q 015303 160 VNSI 163 (409)
Q Consensus 160 ~~S~ 163 (409)
....
T Consensus 274 ~~pn 277 (466)
T PRK06115 274 RRPY 277 (466)
T ss_pred Cccc
Confidence 7644
No 281
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.02 E-value=8.5e-05 Score=71.37 Aligned_cols=97 Identities=26% Similarity=0.348 Sum_probs=72.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... +..++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~~------------------- 212 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH------------------LDEDI------------------- 212 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc------------------cCHHH-------------------
Confidence 48999999999999999999999999999976431000 00000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
+..+.+.+ + .+++++.+++|+.++.+++.+.+++.+|+++.+|.|+.|.|....
T Consensus 213 ----------------------~~~l~~~~-~--~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 213 ----------------------SDRFTEIA-K--KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred ----------------------HHHHHHHH-h--cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 01222222 2 268999999999998777778888888888999999999997543
No 282
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.02 E-value=6.4e-06 Score=78.69 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=33.5
Q ss_pred cccEEEECCChHHHHHHHHHHH--cCCceEEEeCCCCcC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYR--LGIRSMVLESSESLR 40 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~--~g~~V~v~E~~~~~~ 40 (409)
..+|+||||||||+.+|..|++ .|++|+|||+.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4689999999999999999997 799999999998653
No 283
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.02 E-value=0.00033 Score=64.64 Aligned_cols=61 Identities=21% Similarity=0.171 Sum_probs=49.4
Q ss_pred eeccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCCcEEeccEEEecCCCchHH
Q 015303 103 RCVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 103 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
..++...+...|.+.+ .+++++++++|++++.+++.+. |.+.+| +++||.||.|+|+++..
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 3567788888887765 3789999999999998877654 566666 79999999999998853
No 284
>PRK12831 putative oxidoreductase; Provisional
Probab=98.01 E-value=6.6e-06 Score=79.06 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 47999999999999999999999999999998765
No 285
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.01 E-value=5.6e-06 Score=74.97 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~ 38 (409)
||+||||+|++|+.+|..|++.| .+|+|+|++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999997 79999999874
No 286
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=5.2e-05 Score=62.60 Aligned_cols=115 Identities=16% Similarity=0.162 Sum_probs=72.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTIS 82 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.+.+|+|||.|||+-++|+++++..++-+|+|-.-... .+-|..++. ...+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-i~pGGQLtT---------------------TT~v------- 57 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-IAPGGQLTT---------------------TTDV------- 57 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-cCCCceeee---------------------eecc-------
Confidence 44599999999999999999999999999999432210 000000000 0000
Q ss_pred CCcccccccccccccCCccceeccHHHHHHHHHhhCC--CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303 83 GKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELP--SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV 160 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 160 (409)
-+|+.. +. .+.-.+|.+.+++... +.+|+. ..|.+++....-+.+.++. ..+.||.||.|+|+
T Consensus 58 ------eNfPGF-----Pd--gi~G~~l~d~mrkqs~r~Gt~i~t-EtVskv~~sskpF~l~td~-~~v~~~avI~atGA 122 (322)
T KOG0404|consen 58 ------ENFPGF-----PD--GITGPELMDKMRKQSERFGTEIIT-ETVSKVDLSSKPFKLWTDA-RPVTADAVILATGA 122 (322)
T ss_pred ------ccCCCC-----Cc--ccccHHHHHHHHHHHHhhcceeee-eehhhccccCCCeEEEecC-CceeeeeEEEeccc
Confidence 111111 11 3555778888877652 344544 3577777777667776644 45999999999996
Q ss_pred c
Q 015303 161 N 161 (409)
Q Consensus 161 ~ 161 (409)
.
T Consensus 123 s 123 (322)
T KOG0404|consen 123 S 123 (322)
T ss_pred c
Confidence 4
No 287
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.99 E-value=4.3e-05 Score=78.30 Aligned_cols=98 Identities=20% Similarity=0.408 Sum_probs=72.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. . + +.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~--l-----------------d~---- 182 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------Q--L-----------------DQ---- 182 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------h--c-----------------CH----
Confidence 47999999999999999999999999999976431000 0 0 00
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
.....+.+.|.+. +++++.++.++.+..++....|++.+|+++.+|+||.|.|...
T Consensus 183 --------------------~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 183 --------------------TAGRLLQRELEQK--GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred --------------------HHHHHHHHHHHHc--CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 0012333444333 7899999999998766555678888999999999999999764
No 288
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.98 E-value=8.8e-06 Score=74.70 Aligned_cols=35 Identities=29% Similarity=0.707 Sum_probs=33.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+++|||||+||+++|+.|++.|++|.|+||++..
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 58999999999999999999999999999999874
No 289
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.96 E-value=0.00014 Score=69.73 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=72.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-+. ...+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~-------------------- 200 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------EDRD-------------------- 200 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------cCHH--------------------
Confidence 47999999999999999999999999999986431100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
+ ...+.+.|.+. +++++++++|++++.+++.+.+...++ ++.+|.||.|.|.....
T Consensus 201 --------------------~-~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 201 --------------------I-ADNIATILRDQ--GVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 0 11234444433 799999999999988777777776665 48999999999987643
No 290
>PRK02106 choline dehydrogenase; Validated
Probab=97.96 E-value=8.6e-06 Score=80.45 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=34.0
Q ss_pred CCCcccEEEECCChHHHHHHHHHHH-cCCceEEEeCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYR-LGIRSMVLESSE 37 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~-~g~~V~v~E~~~ 37 (409)
|+..||+||||+|++|+.+|..|++ .|++|+|||+++
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 3456899999999999999999999 899999999985
No 291
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.95 E-value=1e-05 Score=76.00 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=32.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++||+|||+|++|+++|+.|++.|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999874
No 292
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=1.4e-05 Score=69.75 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=33.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
+|++|||||++|+.+|..|++.|.+|+|+||++..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 79999999999999999999999999999998754
No 293
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.93 E-value=9.4e-06 Score=82.20 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4699999999999999999999999999999863
No 294
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=0.00015 Score=70.11 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=70.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+. +..+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------~d~~-------------------- 216 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------ADKD-------------------- 216 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------CCHH--------------------
Confidence 48999999999999999999999999999987541000 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC----cEEeccEEEecCCC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG----TILKTKVLIGCDGV 160 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g----~~~~ad~vV~AdG~ 160 (409)
+ +..+.+.|.+. ++++.+++|+.++..++.+.+++.++ .++.+|.||.|.|.
T Consensus 217 --------------------~-~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 217 --------------------I-VKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred --------------------H-HHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 0 12233334332 78889999999987777777766542 36999999999998
Q ss_pred chHH
Q 015303 161 NSIV 164 (409)
Q Consensus 161 ~S~v 164 (409)
....
T Consensus 273 ~pn~ 276 (471)
T PRK06467 273 VPNG 276 (471)
T ss_pred cccC
Confidence 7654
No 295
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.92 E-value=1.3e-05 Score=76.79 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 479999999999999999999999999999997653
No 296
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.90 E-value=0.00014 Score=74.67 Aligned_cols=99 Identities=21% Similarity=0.329 Sum_probs=72.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
..++|||||+.|+-+|..|++.|.+|+|+|+.+..-.. . .+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------------~-------------ld~---- 187 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------------Q-------------LDQ---- 187 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------------h-------------cCH----
Confidence 47999999999999999999999999999976431000 0 000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC--CeEEEEecCCcEEeccEEEecCCCch
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG--HFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
-....+.+.|.+. +++++.++.++.|..++ ....+++.+|+++.+|+||.|.|...
T Consensus 188 --------------------~~~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 188 --------------------MGGEQLRRKIESM--GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred --------------------HHHHHHHHHHHHC--CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 0012344444433 89999999999997643 34567888999999999999999865
Q ss_pred H
Q 015303 163 I 163 (409)
Q Consensus 163 ~ 163 (409)
.
T Consensus 246 n 246 (847)
T PRK14989 246 Q 246 (847)
T ss_pred C
Confidence 4
No 297
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.89 E-value=0.00013 Score=69.91 Aligned_cols=93 Identities=18% Similarity=0.367 Sum_probs=68.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+..... +..+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------~d~~-------------------- 190 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------MDAD-------------------- 190 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------cCHH--------------------
Confidence 47999999999999999999999999999987541100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
+ ...+.+.|.+. +++++.+++|+.++. . .+++.+++++.+|.|+.|.|...
T Consensus 191 --------------------~-~~~l~~~l~~~--gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 191 --------------------M-NQPILDELDKR--EIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred --------------------H-HHHHHHHHHhc--CCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCc
Confidence 0 12334444432 789999999999863 2 45667788899999999999764
No 298
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.89 E-value=0.00017 Score=70.12 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=72.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++... -.. +..+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-l~~------------------~d~~-------------------- 223 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP-LRG------------------FDRQ-------------------- 223 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc-ccc------------------CCHH--------------------
Confidence 4799999999999999999999999999985311 000 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
....+.+.|.+. +++++.++.++.++..++.+.+.+.+|+++.+|.|+.|.|.....
T Consensus 224 ---------------------~~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 224 ---------------------CSEKVVEYMKEQ--GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred ---------------------HHHHHHHHHHHc--CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 012233444332 789999999999887666677778888889999999999986554
No 299
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.89 E-value=1.6e-05 Score=74.96 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=32.5
Q ss_pred cccEEEECCChHHHHHHHHH-HHcCCceEEEeCCCCcC
Q 015303 4 VEDIVIVGAGIAGLTTSLGL-YRLGIRSMVLESSESLR 40 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L-~~~g~~V~v~E~~~~~~ 40 (409)
..+|+||||||||+.+|..| ++.|++|+|+|+.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 46899999999999999976 46799999999998764
No 300
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.89 E-value=0.00018 Score=69.50 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=70.7
Q ss_pred ccEEEECCChHHHHHHHHHHHc---CCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRL---GIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
.+|+|||||+.|+-+|..++.. |.+|+|+|+.+.+-+. +..+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~------------------~d~~----------------- 232 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG------------------FDST----------------- 232 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc------------------cCHH-----------------
Confidence 5799999999999999877654 8999999977541100 0000
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCC
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGV 160 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~ 160 (409)
+ +..+.+.|.+ .+++++.+++++.+..+++. ..+++.+++++.+|.||.|.|.
T Consensus 233 -----------------------~-~~~l~~~L~~--~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 233 -----------------------L-RKELTKQLRA--NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred -----------------------H-HHHHHHHHHH--cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 0 1234444543 37899999999999865443 5677777888999999999997
Q ss_pred chHH
Q 015303 161 NSIV 164 (409)
Q Consensus 161 ~S~v 164 (409)
....
T Consensus 287 ~Pn~ 290 (486)
T TIGR01423 287 VPRT 290 (486)
T ss_pred CcCc
Confidence 6554
No 301
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.89 E-value=6.8e-05 Score=68.82 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=73.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCCcCCcc----cceeccccHHHHHHHcCchhHHHhccccccceee
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSESLRVTG----FAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVA 77 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (409)
...|+|||||.++.-++..|.+++- +|+++=|+....... ....+.|...+.+..+. ++.+.........
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~--~~~R~~~l~~~~~-- 265 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLP--DEERRELLREQRH-- 265 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHHHHTGG--
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCC--HHHHHHHHHHhHh--
Confidence 4689999999999999999999875 899999987653221 12345665555555542 2221111100000
Q ss_pred eecCCCCcccccccccccccCCccceeccHHHH---HHHHHhh----CCCceEEeCCeEEEEEEeCC-eEEEEecCC---
Q 015303 78 TPTISGKPSSERSLKVQGKYGEHEMRCVRRKLL---LETLAKE----LPSGTIRYSSQVVSIEESGH-FKLLHLADG--- 146 (409)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l---~~~L~~~----~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g--- 146 (409)
. .+-.|+...+ -+.+++. -..+++..+++|++++..++ ++.+++.+.
T Consensus 266 -----------~-----------ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~ 323 (341)
T PF13434_consen 266 -----------T-----------NYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTG 323 (341)
T ss_dssp -----------G-----------TSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT-
T ss_pred -----------h-----------cCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCC
Confidence 0 0001222211 1222211 12478999999999999884 899988862
Q ss_pred --cEEeccEEEecCCC
Q 015303 147 --TILKTKVLIGCDGV 160 (409)
Q Consensus 147 --~~~~ad~vV~AdG~ 160 (409)
.++++|+||.|||.
T Consensus 324 ~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 324 EEETLEVDAVILATGY 339 (341)
T ss_dssp -EEEEEESEEEE---E
T ss_pred CeEEEecCEEEEcCCc
Confidence 37899999999995
No 302
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.88 E-value=0.00021 Score=68.77 Aligned_cols=97 Identities=20% Similarity=0.280 Sum_probs=67.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++++.+..... .+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------~~------ 189 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD----------------------------------SF------ 189 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch----------------------------------hc------
Confidence 57999999999999999999999999999876431000 00
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
+ .. + ...+.+.|.+ .+++++++++|+++..++....+.+. +.++.||+||.|.|...
T Consensus 190 -------~-------~~---~-~~~l~~~l~~--~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 190 -------D-------KE---I-TDVMEEELRE--NGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKP 246 (444)
T ss_pred -------C-------HH---H-HHHHHHHHHH--CCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCc
Confidence 0 00 0 1233344433 27899999999999654443444444 44699999999999764
No 303
>PRK14694 putative mercuric reductase; Provisional
Probab=97.87 E-value=0.00022 Score=68.98 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=70.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||+|++|+-+|..|++.|.+|+|+++...... ...+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~~~~-------------------- 219 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ-------------------EDPA-------------------- 219 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC-------------------CCHH--------------------
Confidence 4799999999999999999999999999986311000 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
+ ...+.+.|.+. +++++.+++++.++.+++.+.+.+.++ ++.+|.||.|.|.....
T Consensus 220 --------------------~-~~~l~~~l~~~--GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 220 --------------------V-GEAIEAAFRRE--GIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 0 12334444432 799999999999987776666666554 69999999999987654
No 304
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.87 E-value=1.7e-05 Score=79.72 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+||||||||+++|..|++.|++|+|+|+.+.+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 469999999999999999999999999999998654
No 305
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.86 E-value=1.6e-05 Score=83.00 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||||||++|..|++.|++|+|+|+.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 469999999999999999999999999999998654
No 306
>PRK14727 putative mercuric reductase; Provisional
Probab=97.86 E-value=0.00022 Score=69.16 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=71.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++...... ...++
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~-------------------~d~~~------------------- 230 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR-------------------EDPLL------------------- 230 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc-------------------chHHH-------------------
Confidence 4799999999999999999999999999986421000 00000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
...+.+.|.+. +++++++++|+.++.+++.+.+.+.++ ++.+|.||.|.|.....
T Consensus 231 ----------------------~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 231 ----------------------GETLTACFEKE--GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred ----------------------HHHHHHHHHhC--CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 11233444332 789999999999987777777776665 58999999999987654
No 307
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.84 E-value=1.9e-05 Score=76.32 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=33.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLR 40 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
|||+|||+||+|+++|..|++.|++|+|+|++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999987654
No 308
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.83 E-value=3.9e-05 Score=69.57 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=44.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCce--EEEeCCCCcC----C-c----------cccee----ccccHHHHHHHcCch
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRS--MVLESSESLR----V-T----------GFAFT----VWTNAWKALDAVGIG 62 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V--~v~E~~~~~~----~-~----------~~~~~----~~~~~~~~l~~~gl~ 62 (409)
..+|+|||||++||++|++|++++.+| +|+|+.+... . . ++++. .....+..+..+|+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~ 90 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE 90 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence 479999999999999999999998765 5699887531 1 0 01111 111366778888987
Q ss_pred hHHH
Q 015303 63 NSLR 66 (409)
Q Consensus 63 ~~~~ 66 (409)
+++.
T Consensus 91 ~e~~ 94 (491)
T KOG1276|consen 91 DELQ 94 (491)
T ss_pred ceee
Confidence 6654
No 309
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.83 E-value=2.3e-05 Score=75.69 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=33.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 369999999999999999999999999999998654
No 310
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.82 E-value=2.9e-05 Score=74.67 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHc----CCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~----g~~V~v~E~~~~~ 39 (409)
+.+|+|||||+|||++|..|++. |.+|+|+|+.+.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~ 61 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP 61 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence 46999999999999999999995 6899999999865
No 311
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.82 E-value=2.7e-05 Score=72.41 Aligned_cols=33 Identities=30% Similarity=0.661 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+||+|||+|++|+++|+.|++.|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999875
No 312
>PTZ00058 glutathione reductase; Provisional
Probab=97.80 E-value=0.0004 Score=68.12 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=70.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+-+. +..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~d~~------------------- 279 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------FDET------------------- 279 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------CCHH-------------------
Confidence 358999999999999999999999999999976431000 0000
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCC-cEEeccEEEecCCCc
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADG-TILKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g-~~~~ad~vV~AdG~~ 161 (409)
+ ...+.+.|.+ .+++++.++++..++.+++ ++.+.+.++ +++.+|.|+.|.|..
T Consensus 280 ---------------------i-~~~l~~~L~~--~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 280 ---------------------I-INELENDMKK--NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred ---------------------H-HHHHHHHHHH--CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCC
Confidence 0 1233444443 3789999999999986543 465655444 479999999999975
Q ss_pred hH
Q 015303 162 SI 163 (409)
Q Consensus 162 S~ 163 (409)
..
T Consensus 336 Pn 337 (561)
T PTZ00058 336 PN 337 (561)
T ss_pred CC
Confidence 44
No 313
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.78 E-value=2.7e-05 Score=74.98 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 469999999999999999999999999999998653
No 314
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.77 E-value=0.00033 Score=67.82 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=69.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
-+++|||||+.|+-+|..|++.|.+|+|+++. .+.+ .+..++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~------------------~~d~~~------------------- 222 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR------------------GFDQDC------------------- 222 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cccc------------------ccCHHH-------------------
Confidence 47999999999999999999999999999853 1000 000000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCC---cEEeccEEEecCCCc
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADG---TILKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g---~~~~ad~vV~AdG~~ 161 (409)
+..+.+.|.+. +++++.++.++.+...++.+.+++.++ .++.+|.||.|.|..
T Consensus 223 ----------------------~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 223 ----------------------ANKVGEHMEEH--GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred ----------------------HHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence 12334445433 789999999999887666666776655 379999999999975
Q ss_pred hH
Q 015303 162 SI 163 (409)
Q Consensus 162 S~ 163 (409)
..
T Consensus 279 pn 280 (484)
T TIGR01438 279 AC 280 (484)
T ss_pred cC
Confidence 43
No 315
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.77 E-value=0.0004 Score=67.09 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=68.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... +..+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------- 211 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------EDPE-------------------- 211 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------hhHH--------------------
Confidence 58999999999999999999999999999987542100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCC--cEEeccEEEecCCCc
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADG--TILKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g--~~~~ad~vV~AdG~~ 161 (409)
+ ...+.+.|.+ . +++++++++++++.+++ .++++..++ .++.+|.||.|.|..
T Consensus 212 --------------------~-~~~~~~~l~~--~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 212 --------------------V-SKQAQKILSK--E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred --------------------H-HHHHHHHHhh--c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCc
Confidence 0 1223334432 2 78999999999987654 455544344 469999999999976
Q ss_pred hHH
Q 015303 162 SIV 164 (409)
Q Consensus 162 S~v 164 (409)
...
T Consensus 268 p~~ 270 (460)
T PRK06292 268 PNT 270 (460)
T ss_pred cCC
Confidence 443
No 316
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.74 E-value=0.0003 Score=66.88 Aligned_cols=98 Identities=24% Similarity=0.314 Sum_probs=73.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+++|||+|++|+.+|..|+++|++|+++|+.+.+......
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------------------------------- 177 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------------------------------- 177 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------------------------------
Confidence 58999999999999999999999999999988663322100
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEE---EEecCCcEEeccEEEecCCCc
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKL---LHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~---v~~~~g~~~~ad~vV~AdG~~ 161 (409)
. --...+.+.|.+. +++++.++++..++..++... +...++..+.+|+++.+.|..
T Consensus 178 -------~------------~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 178 -------P------------EVAEELAELLEKY--GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred -------H------------HHHHHHHHHHHHC--CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 0 0012334444433 688999999999988776543 577788889999999999965
Q ss_pred h
Q 015303 162 S 162 (409)
Q Consensus 162 S 162 (409)
-
T Consensus 237 p 237 (415)
T COG0446 237 P 237 (415)
T ss_pred c
Confidence 4
No 317
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.74 E-value=3.8e-05 Score=77.02 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 368999999999999999999999999999998764
No 318
>PRK13748 putative mercuric reductase; Provisional
Probab=97.73 E-value=0.00046 Score=68.48 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=70.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++...... ...++
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------~d~~~------------------- 312 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR-------------------EDPAI------------------- 312 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc-------------------cCHHH-------------------
Confidence 4799999999999999999999999999996421000 00000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchHH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v 164 (409)
...+.+.|.+. +++++.+++++.++.+++.+.+.+.++ ++.+|.||.|.|.....
T Consensus 313 ----------------------~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 313 ----------------------GEAVTAAFRAE--GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred ----------------------HHHHHHHHHHC--CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 11233444332 789999999999987777777776665 59999999999976543
No 319
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.72 E-value=0.0054 Score=60.17 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=49.9
Q ss_pred eccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE-EEEec---CC--cEEeccEEEecCCCchHH-HhhhCCC
Q 015303 104 CVRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLA---DG--TILKTKVLIGCDGVNSIV-AKWLGFK 171 (409)
Q Consensus 104 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v-~v~~~---~g--~~~~ad~vV~AdG~~S~v-r~~l~~~ 171 (409)
.++...+...+...+ .|++++++++|+++..+++.+ .|++. ++ .+++|+.||.|+|.|+.- .+.++..
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~ 200 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD 200 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC
Confidence 567777777776655 378999999999999877764 24432 34 268999999999999864 4445553
No 320
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.72 E-value=4.2e-05 Score=73.65 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 468999999999999999999999999999998754
No 321
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.69 E-value=4e-05 Score=74.91 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|..++|+||||+|.+|+.+|..|+..|++|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3457999999999999999999999999999999984
No 322
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.66 E-value=0.00061 Score=64.98 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.+.+.|.+ .+++++.+++|+.+..+ .+++++|+++.+|++|.|.|..
T Consensus 233 ~~~~~L~~--~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 233 YGQRRLRR--LGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHH--CCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCCC
Confidence 44555544 38999999999988643 3567888899999999999954
No 323
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.64 E-value=0.00053 Score=67.08 Aligned_cols=91 Identities=25% Similarity=0.381 Sum_probs=65.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... +
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~---------------------~--------------------- 390 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA---------------------D--------------------- 390 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh---------------------h---------------------
Confidence 4899999999999999999999999999986532100 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEE-EEecC---C--cEEeccEEEecC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKL-LHLAD---G--TILKTKVLIGCD 158 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~-v~~~~---g--~~~~ad~vV~Ad 158 (409)
..+.+.|.+ ..++++++++.++.+..+++.+. |++.+ + +++.||.|+.|.
T Consensus 391 -----------------------~~l~~~l~~-~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~ 446 (515)
T TIGR03140 391 -----------------------KVLQDKLKS-LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQI 446 (515)
T ss_pred -----------------------HHHHHHHhc-CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEe
Confidence 011223322 24789999999999977655543 55543 2 368999999999
Q ss_pred CCc
Q 015303 159 GVN 161 (409)
Q Consensus 159 G~~ 161 (409)
|..
T Consensus 447 G~~ 449 (515)
T TIGR03140 447 GLV 449 (515)
T ss_pred CCc
Confidence 953
No 324
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.63 E-value=6.4e-05 Score=75.37 Aligned_cols=36 Identities=31% Similarity=0.484 Sum_probs=33.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 468999999999999999999999999999998764
No 325
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.63 E-value=0.00071 Score=61.27 Aligned_cols=91 Identities=22% Similarity=0.351 Sum_probs=64.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||+|++|+-+|..|++.+.+|+++++.+... . .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--------------------~--------------------~-- 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--------------------A--------------------E-- 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------c--------------------C--
Confidence 489999999999999999999999999999863210 0 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEec---CC--cEEeccEEEecCC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLA---DG--TILKTKVLIGCDG 159 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~---~g--~~~~ad~vV~AdG 159 (409)
..+.+.|.+ ..+++++++++++++..++....+++. ++ .++.+|.||.|+|
T Consensus 180 -----------------------~~~~~~l~~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 180 -----------------------KILLDRLRK-NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred -----------------------HHHHHHHHh-CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence 012233332 237889999999998765532233332 23 4789999999999
Q ss_pred Cc
Q 015303 160 VN 161 (409)
Q Consensus 160 ~~ 161 (409)
..
T Consensus 236 ~~ 237 (300)
T TIGR01292 236 HE 237 (300)
T ss_pred CC
Confidence 53
No 326
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.63 E-value=7.9e-05 Score=69.20 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||++|+.+|..|++.|++|+|+|+.+.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 469999999999999999999999999999998653
No 327
>PLN02546 glutathione reductase
Probab=97.58 E-value=0.00081 Score=65.99 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=69.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+... ++.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-----------------------------------~d~---- 293 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-----------------------------------FDE---- 293 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------cCH----
Confidence 58999999999999999999999999999976431100 000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEe-CCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEES-GHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
-.+..+.+.|.+ .+++++.+++++.+... ++.+.+.+.++....+|.||.|.|....
T Consensus 294 --------------------~~~~~l~~~L~~--~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 294 --------------------EVRDFVAEQMSL--RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred --------------------HHHHHHHHHHHH--CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccC
Confidence 001233444433 38999999999999764 3446666655554558999999998765
Q ss_pred H
Q 015303 164 V 164 (409)
Q Consensus 164 v 164 (409)
.
T Consensus 352 t 352 (558)
T PLN02546 352 T 352 (558)
T ss_pred C
Confidence 4
No 328
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.58 E-value=0.00069 Score=67.54 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=68.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. +..+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------~d~e-------------------- 354 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------LDAD-------------------- 354 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------CCHH--------------------
Confidence 47999999999999999999999999999987541100 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe--EEEEecC-------C--------c
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHLAD-------G--------T 147 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~-------g--------~ 147 (409)
+ ...+.+.+.+ ..+++++.++.|+.++..++. +.+.+.+ + +
T Consensus 355 --------------------i-s~~l~~~ll~-~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 412 (659)
T PTZ00153 355 --------------------V-AKYFERVFLK-SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIK 412 (659)
T ss_pred --------------------H-HHHHHHHHhh-cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccce
Confidence 0 1122232322 237899999999999876532 5555431 1 2
Q ss_pred EEeccEEEecCCCchHH
Q 015303 148 ILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 148 ~~~ad~vV~AdG~~S~v 164 (409)
++.+|.|+.|.|....+
T Consensus 413 ~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 413 ETYVDSCLVATGRKPNT 429 (659)
T ss_pred EEEcCEEEEEECcccCC
Confidence 69999999999976543
No 329
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.55 E-value=7.7e-05 Score=70.67 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=33.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+|+|||+||+|+++|..|++.|++|+++|+.+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 58999999999999999999999999999998764
No 330
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.54 E-value=0.00011 Score=71.24 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=32.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 69999999999999999999999999999998753
No 331
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00015 Score=63.55 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
...|-|||||+||.-+|+.++++|++|.|+|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 45899999999999999999999999999997753
No 332
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.52 E-value=0.0001 Score=72.90 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=32.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+|+|||+||+||++|..|++.|++|+|+|+.+.+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999998764
No 333
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.44 E-value=0.00015 Score=59.48 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLR 40 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~ 40 (409)
.||+|||+|-+||++|+..+++ .++|.+||..-.|.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 4999999999999999999864 58999999886653
No 334
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.41 E-value=0.0011 Score=61.53 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred HHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCc-EEeccEEEecCCCc-hHHHhh
Q 015303 110 LLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGT-ILKTKVLIGCDGVN-SIVAKW 167 (409)
Q Consensus 110 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~-~~~ad~vV~AdG~~-S~vr~~ 167 (409)
..+.|.+. ++++..++.|++++.++ |++++++ ++.++.+|=|.|.. |++-+.
T Consensus 215 a~~~L~~~--GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 215 AERALEKL--GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred HHHHHHHC--CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 34444443 89999999999997763 6777777 59999999999974 444444
No 335
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.40 E-value=0.00013 Score=71.67 Aligned_cols=33 Identities=33% Similarity=0.358 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~ 38 (409)
|+||||||.+|+.+|..|++.| ++|+|+|+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 79999999863
No 336
>PLN02785 Protein HOTHEAD
Probab=97.40 E-value=0.00018 Score=70.94 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.||++|||||.+|+.+|..|++ +.+|+|||++..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 5999999999999999999999 689999999864
No 337
>PRK13984 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.00024 Score=71.08 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||+||+|+++|..|++.|++|+|+|+.+.+
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999998764
No 338
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0013 Score=58.15 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES 35 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
.+||.+|||||-+||++|...+..|.+|.++|-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 369999999999999999999999999999994
No 339
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00035 Score=62.53 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCceEEEeCCCCcC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRL--GIRSMVLESSESLR 40 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~--g~~V~v~E~~~~~~ 40 (409)
+..|+|||+||||+.+|..|.++ +++|.|+|+.+.|.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 34899999999999999999884 68999999998763
No 340
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.28 E-value=0.0024 Score=59.35 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~ 37 (409)
..|+|||+|+.|+-+|..|++.|.+ |+|++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99998753
No 341
>PRK10262 thioredoxin reductase; Provisional
Probab=97.28 E-value=0.0024 Score=58.56 Aligned_cols=33 Identities=12% Similarity=0.361 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 489999999999999999999999999999864
No 342
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.27 E-value=0.0094 Score=56.78 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=37.0
Q ss_pred CceEEeCCeEEEEEEeCCeEEEEe-cCCcEEeccEEEecCCCchHHHhhh
Q 015303 120 SGTIRYSSQVVSIEESGHFKLLHL-ADGTILKTKVLIGCDGVNSIVAKWL 168 (409)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~~~ad~vV~AdG~~S~vr~~l 168 (409)
+++|+++++|++|+.+++++++.. .+|+++.||.||.|..... +.+.+
T Consensus 211 g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~-~~~ll 259 (419)
T TIGR03467 211 GGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH-AASLL 259 (419)
T ss_pred CCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH-HHHhC
Confidence 679999999999999888766544 3677899999999877554 34444
No 343
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.21 E-value=0.00027 Score=61.76 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=30.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CC-ceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRL-GI-RSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~-~V~v~E~~~~ 38 (409)
.+++|+|||||-+|+..|..+.++ |- +|.|+|..+.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 468999999999999999999774 43 7999997754
No 344
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.16 E-value=0.0035 Score=61.41 Aligned_cols=91 Identities=22% Similarity=0.329 Sum_probs=65.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||..|+-+|..|++.+.+|+|+++.+.... .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~----------------------------------------~-- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA----------------------------------------D-- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc----------------------------------------c--
Confidence 4899999999999999999999999999986643100 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEE-EEec---CCc--EEeccEEEecC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKL-LHLA---DGT--ILKTKVLIGCD 158 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~-v~~~---~g~--~~~ad~vV~Ad 158 (409)
..+.+.+. ..++++++.++.++++..+++.++ +++. +++ ++.+|.|+.|.
T Consensus 390 -----------------------~~l~~~l~-~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~ 445 (517)
T PRK15317 390 -----------------------QVLQDKLR-SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQI 445 (517)
T ss_pred -----------------------HHHHHHHh-cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeE
Confidence 00112222 234889999999999987655433 4443 232 68999999999
Q ss_pred CCc
Q 015303 159 GVN 161 (409)
Q Consensus 159 G~~ 161 (409)
|..
T Consensus 446 G~~ 448 (517)
T PRK15317 446 GLV 448 (517)
T ss_pred CCc
Confidence 953
No 345
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.10 E-value=0.0067 Score=56.18 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=48.6
Q ss_pred cHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEEEEecCC-cEEeccEEEecCCCch-----------HHHhhhCCC
Q 015303 106 RRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKLLHLADG-TILKTKVLIGCDGVNS-----------IVAKWLGFK 171 (409)
Q Consensus 106 ~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g-~~~~ad~vV~AdG~~S-----------~vr~~l~~~ 171 (409)
.-+.+.+.|..++ .+++|+++++|++| +++.+.+.+.++ .+++||.||.|+|..| .+.+.+|..
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~ 161 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS 161 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc
Confidence 3456666666655 47999999999999 344577776543 4699999999999876 456777766
Q ss_pred CCc
Q 015303 172 NPA 174 (409)
Q Consensus 172 ~~~ 174 (409)
...
T Consensus 162 i~~ 164 (376)
T TIGR03862 162 VAP 164 (376)
T ss_pred ccC
Confidence 443
No 346
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.07 E-value=0.0075 Score=56.33 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=35.9
Q ss_pred HHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCch
Q 015303 109 LLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 109 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
.+.+.|.+. +++++.+++++.++.. .+.+.+|+++.+|.||.|.|...
T Consensus 196 ~~~~~l~~~--gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 196 LVLRLLARR--GIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHC--CCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCCh
Confidence 344445443 7899999999988532 46677888999999999999643
No 347
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.05 E-value=0.0075 Score=57.96 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..|++.|.+|+|++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999999774
No 348
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.04 E-value=0.0049 Score=59.47 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..|++.|. +|+++++++
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999999998 899999764
No 349
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.00067 Score=68.69 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=33.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++|+|||.|||||++|-.|-+.|+-|+|+||.+.+
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 58999999999999999999999999999999874
No 350
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.99 E-value=0.0055 Score=54.51 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
..||.+|||||-.|+++|...+.+|.+|.|+|..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 3699999999999999999999999999999976
No 351
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.98 E-value=0.0054 Score=56.99 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=35.6
Q ss_pred CceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCC
Q 015303 120 SGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV 160 (409)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 160 (409)
+++++++++|+.++.... +|.+.+|++++++.++.|+|.
T Consensus 141 gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence 789999999999988766 688999999999999999997
No 352
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.97 E-value=0.0011 Score=62.44 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=29.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|..+|||+|+|.|+.-+.+|.+|++.|.+|+.+|+++.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~y 38 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDY 38 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCC
Confidence 67889999999999999999999999999999999985
No 353
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.87 E-value=0.0069 Score=56.33 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=74.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
-.|+++|+|..|+-+|..|...+.+|+++++.+.+-+.- + .
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~l----------------------------------f---~-- 254 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRL----------------------------------F---G-- 254 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhh----------------------------------h---h--
Confidence 469999999999999999999999999999875522210 0 0
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeC--CeEEEEecCCcEEeccEEEecCCCch
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESG--HFKLLHLADGTILKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vV~AdG~~S 162 (409)
. --++.+..++.+. +++++.++.+.+++.+. ....|.+.++.++.||+||.+.|+.+
T Consensus 255 ----~---------------~i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 255 ----P---------------SIGQFYEDYYENK--GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred ----H---------------HHHHHHHHHHHhc--CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 0 0022344455443 78999999999998766 44788999999999999999999754
No 354
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.86 E-value=0.0024 Score=61.30 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||+|.+|+-.|..|++.+.+|+++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 579999999999999999999999999999864
No 355
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.82 E-value=0.0015 Score=52.92 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|+|||||..|.++|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999875
No 356
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.81 E-value=0.0086 Score=63.29 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=64.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISG 83 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+|+|||+|+.|+.+|..|++.|. .|+|+|..+.. . .
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~----~----------------------------- 355 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------S----P----------------------------- 355 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------h----H-----------------------------
Confidence 589999999999999999999995 58899866321 0 0
Q ss_pred CcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCe--EEEEe--cCCcEEeccEEEecCC
Q 015303 84 KPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHF--KLLHL--ADGTILKTKVLIGCDG 159 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~--~~g~~~~ad~vV~AdG 159 (409)
.+.+.|.+ .+++++.++.++.+..++.. +++.. .+++++.||.|+.+.|
T Consensus 356 -------------------------~l~~~L~~--~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G 408 (985)
T TIGR01372 356 -------------------------EARAEARE--LGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG 408 (985)
T ss_pred -------------------------HHHHHHHH--cCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC
Confidence 01223322 27888999988888655432 33332 1445799999999999
Q ss_pred CchHH
Q 015303 160 VNSIV 164 (409)
Q Consensus 160 ~~S~v 164 (409)
.....
T Consensus 409 ~~Pnt 413 (985)
T TIGR01372 409 WTPVV 413 (985)
T ss_pred cCchh
Confidence 76543
No 357
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.81 E-value=0.0011 Score=60.83 Aligned_cols=49 Identities=24% Similarity=0.199 Sum_probs=41.6
Q ss_pred CceEEeCCeEEEEEEeCCe-EEEEecCCcEEeccEEEecCCCchHHHhhh
Q 015303 120 SGTIRYSSQVVSIEESGHF-KLLHLADGTILKTKVLIGCDGVNSIVAKWL 168 (409)
Q Consensus 120 ~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (409)
|.+|.++..|.+|..+++. +-|.++||.+++++.||-=.+.|-..-+.+
T Consensus 278 GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 278 GAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred cceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 6799999999999877755 778999999999999998888887776665
No 358
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.74 E-value=0.017 Score=55.98 Aligned_cols=38 Identities=26% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCcEEEeccCcCCCCCCcccchhhhhhHHHHHHHHHHHHhhcc
Q 015303 286 RGSVCVAGDALHPMTPDIGQGGCAALEDGIVLARCINEALKTK 328 (409)
Q Consensus 286 ~~~v~lvGDAA~~~~P~~g~G~~~al~~a~~la~~l~~~~~~~ 328 (409)
.++|+.+||+++. | .-+..|+.++..+|..|.+++.+.
T Consensus 430 ~~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 430 NPKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 4679999999972 1 135679999999999999988753
No 359
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.71 E-value=0.002 Score=53.41 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999998754
No 360
>PRK12831 putative oxidoreductase; Provisional
Probab=96.68 E-value=0.022 Score=54.93 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999999764
No 361
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.60 E-value=0.0023 Score=61.83 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CCceEEEeCCCCc
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLESSESL 39 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~~~~~ 39 (409)
..||.+|||||-||+.+|..|++. .++|+|+|++..+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999985 5899999998754
No 362
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0028 Score=54.49 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=42.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc-----C--CcccceeccccHHHHHHHcCch
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL-----R--VTGFAFTVWTNAWKALDAVGIG 62 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~-----~--~~~~~~~~~~~~~~~l~~~gl~ 62 (409)
+++|||+|..|..+|..|.+.|++|+++|+++.. . ...............|++.|+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 7999999999999999999999999999998753 1 1222333334445777777653
No 363
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.56 E-value=0.0032 Score=56.81 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=34.3
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
||+..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 56667899999999999999999999999999998754
No 364
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.55 E-value=0.026 Score=55.91 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 479999999999999999999999999999774
No 365
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.54 E-value=0.12 Score=50.44 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=39.5
Q ss_pred HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE-EEEecCC-----cEEeccEEEecCCCch
Q 015303 108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK-LLHLADG-----TILKTKVLIGCDGVNS 162 (409)
Q Consensus 108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v-~v~~~~g-----~~~~ad~vV~AdG~~S 162 (409)
..|.+.|.+.+ .+++|+++++|++|..+++++ .+...++ +++++|.||.+.....
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~ 294 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS 294 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence 45666666655 478999999999998877642 2333333 5789999998888653
No 366
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.47 E-value=0.021 Score=51.67 Aligned_cols=97 Identities=22% Similarity=0.323 Sum_probs=70.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
..++|||||..||-.+.--.+.|-+|+++|-.+.... .. +++
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~-----------------------------------~m---D~E 253 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG-----------------------------------VM---DGE 253 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc-----------------------------------cc---CHH
Confidence 4789999999999999999999999999995432100 00 100
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCC-eEEEEecCC-----cEEeccEEEecC
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGH-FKLLHLADG-----TILKTKVLIGCD 158 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g-----~~~~ad~vV~Ad 158 (409)
+ .+.+.+.|.. ++.++..+++|+.....++ .+.++..+- ++++||.+..|.
T Consensus 254 --------------------i-sk~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsi 310 (506)
T KOG1335|consen 254 --------------------I-SKAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSI 310 (506)
T ss_pred --------------------H-HHHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEc
Confidence 0 1233344443 4889999999999998877 577766542 379999999999
Q ss_pred CCch
Q 015303 159 GVNS 162 (409)
Q Consensus 159 G~~S 162 (409)
|+.-
T Consensus 311 GRrP 314 (506)
T KOG1335|consen 311 GRRP 314 (506)
T ss_pred cCcc
Confidence 9643
No 367
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.37 E-value=0.0048 Score=55.32 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=33.5
Q ss_pred CCCc-ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESV-EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~-~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+.. .+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4443 3799999999999999999999999999998865
No 368
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.0047 Score=59.72 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
+|+|||.|++|+++|..|++.|++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988654
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.0055 Score=59.55 Aligned_cols=33 Identities=27% Similarity=0.596 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||+|++|+.+|..|+++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999765
No 370
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.23 E-value=0.0055 Score=50.91 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|-.|+.+|..|++.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 799999999999999999999999999998764
No 371
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.22 E-value=0.0077 Score=48.35 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=29.5
Q ss_pred EEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 7 v~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|+|+|+|-.|+..|..|++.|++|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7999999999999999999999999999875
No 372
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.22 E-value=0.012 Score=57.41 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|||+|.+|+-.|..|++...+|.+.=|+..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 35899999999999999999999889999888753
No 373
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.09 E-value=0.007 Score=55.02 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 799999999999999999999999999998854
No 374
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.07 E-value=0.011 Score=57.27 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=32.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 58999999999999999999999999999998754
No 375
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.03 E-value=0.063 Score=55.29 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~~ 38 (409)
.+|+|||||..|+-+|..|.+.|.+ |+|+++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4899999999999999999999987 999997643
No 376
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.01 Score=57.27 Aligned_cols=34 Identities=29% Similarity=0.579 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
...|+|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999875
No 377
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.97 E-value=0.011 Score=53.93 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+.+|+|||+|-.|.++|..|++.|++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999999864
No 378
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.96 E-value=0.094 Score=52.98 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..|.+.|. +|+|++++.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 489999999999999999999996 599998765
No 379
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.93 E-value=0.011 Score=53.59 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++|+|+|+|-.|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 589999999999999999999999999999863
No 380
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.92 E-value=0.012 Score=53.38 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|.|||+|..|...|..++.+|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998764
No 381
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.88 E-value=0.012 Score=52.92 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998754
No 382
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.84 E-value=0.016 Score=46.76 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=29.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLES 35 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
...|+|||||..|...|..|.+.|.+|+|+.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 46899999999999999999999999999953
No 383
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.81 E-value=0.014 Score=53.27 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|++-.+|.|||+|..|...|..|++.|++|+++|++..
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 55546899999999999999999999999999997654
No 384
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.81 E-value=0.013 Score=52.94 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.9
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+.-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 55546799999999999999999999999999998754
No 385
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.81 E-value=0.075 Score=48.73 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=36.2
Q ss_pred CCceEEeCCeEEEEEEeCCe-EEEEecCC-----cEEeccEEEecCCCch
Q 015303 119 PSGTIRYSSQVVSIEESGHF-KLLHLADG-----TILKTKVLIGCDGVNS 162 (409)
Q Consensus 119 ~~~~i~~~~~v~~i~~~~~~-v~v~~~~g-----~~~~ad~vV~AdG~~S 162 (409)
+.+.+..+++|.+++..+++ +.+.+... ++++.|.||.|||.+-
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRR 340 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEeccccc
Confidence 46789999999999998866 77776543 3789999999999873
No 386
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.73 E-value=0.014 Score=53.89 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
||+ +|.|||+|..|...|..|++.|++|+++++.
T Consensus 1 ~~m--kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 1 MMA--RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCc--eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 553 7999999999999999999999999999974
No 387
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.73 E-value=0.016 Score=53.21 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|...++|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 44556899999999999999999999999999998643
No 388
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.63 E-value=0.014 Score=52.44 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999999999999998754
No 389
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.60 E-value=0.02 Score=48.39 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
...|+|||||.+|..-+..|.+.|.+|+|+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 358999999999999999999999999999865
No 390
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.59 E-value=0.017 Score=52.07 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998754
No 391
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.57 E-value=0.018 Score=45.17 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+.+|+|+|+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999998 7999998754
No 392
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.55 E-value=0.018 Score=52.40 Aligned_cols=30 Identities=33% Similarity=0.337 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLES 35 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
+|+|||+|..|.++|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999997
No 393
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.53 E-value=0.019 Score=51.54 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3799999999999999999999999999998754
No 394
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.52 E-value=0.012 Score=43.76 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=31.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+...|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 34689999999999999999999999999999874
No 395
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.52 E-value=0.037 Score=50.61 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=39.1
Q ss_pred CCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 119 PSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 119 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.++.++-+..|.++......+.+.++||.+++.|+||.|.|-.
T Consensus 406 ~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 406 GGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEE 448 (659)
T ss_pred cCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCC
Confidence 3789999999999988888899999999999999999999963
No 396
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.51 E-value=0.018 Score=52.21 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|+|||+|-.|.++|..|++.|++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999853
No 397
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.44 E-value=0.045 Score=53.91 Aligned_cols=106 Identities=23% Similarity=0.363 Sum_probs=67.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
..-+|||||.-|+-+|..|...|.+|+|++=.+..- -++| +...+
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------------erQL-------------------D~~ag- 190 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------------ERQL-------------------DRTAG- 190 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------------HHhh-------------------hhHHH-
Confidence 346999999999999999999999999998543310 0000 00000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH-
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI- 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~- 163 (409)
..|...|.+. +++++.+...+.+...+....+.++||..+.||+||-|+|..-.
T Consensus 191 -----------------------~lL~~~le~~--Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 191 -----------------------RLLRRKLEDL--GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND 245 (793)
T ss_pred -----------------------HHHHHHHHhh--cceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccccc
Confidence 1112222221 55666665555555545556788999999999999999998533
Q ss_pred -HHhhhCC
Q 015303 164 -VAKWLGF 170 (409)
Q Consensus 164 -vr~~l~~ 170 (409)
+.+..|+
T Consensus 246 ela~~aGl 253 (793)
T COG1251 246 ELAKEAGL 253 (793)
T ss_pred HhHHhcCc
Confidence 3444433
No 398
>PRK04148 hypothetical protein; Provisional
Probab=95.44 E-value=0.017 Score=44.72 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|++||.| .|..+|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 999999999999999999998755
No 399
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.41 E-value=0.025 Score=47.66 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+.+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999999 699999874
No 400
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.40 E-value=0.022 Score=55.45 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|++-.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 44545899999999999999999999999999998754
No 401
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.38 E-value=0.028 Score=47.50 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999999999853
No 402
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.36 E-value=0.03 Score=51.05 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=32.9
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 2 ESVEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 2 ~~~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.+..+|+|||+|-.|.++|..|+..|+ +|+|+|.++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 345789999999999999999999996 8999998765
No 403
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.34 E-value=0.022 Score=44.55 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 7 v~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++|+|+|+.+.+++..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998865
No 404
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.31 E-value=0.027 Score=42.85 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 7 IVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 7 v~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+|||.|..|..++..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999864
No 405
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.27 E-value=0.032 Score=45.67 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+..|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999764
No 406
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.23 E-value=0.14 Score=48.51 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=64.5
Q ss_pred EEEECCChHHHHHHHHHHHcC--CceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecCCCC
Q 015303 7 IVIVGAGIAGLTTSLGLYRLG--IRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTISGK 84 (409)
Q Consensus 7 v~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
++|||+|++|+.+|..|.+.+ .+|+++.+........+.+.. .+. ....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~---------------~~~--------------~~~~ 51 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSL---------------YVG--------------GGIA 51 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccch---------------HHh--------------cccC
Confidence 589999999999999998854 578877777554333221110 000 0000
Q ss_pred cccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCchH
Q 015303 85 PSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVNSI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 163 (409)
....+. .... .. ...++.+..+++|+.++.... .+.+.++ .+.+|.+|.|+|..-.
T Consensus 52 ~~~~~~--------------~~~~-----~~-~~~~i~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 52 SLEDLR--------------YPPR-----FN-RATGIDVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGARPR 107 (415)
T ss_pred CHHHhc--------------ccch-----hH-HhhCCEEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCCccc
Confidence 000000 0001 22 223688999999999987666 4555666 7899999999997643
No 407
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.16 E-value=0.03 Score=50.79 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
+|.|||+|..|.++|+.|+..|+ +|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 7999998754
No 408
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.13 E-value=0.035 Score=48.80 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4689999999999999999999995 8999997754
No 409
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.12 E-value=0.31 Score=47.19 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.+|+|||+|..|+-+|..+.+.|. +|+|+++++.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 589999999999999999999995 7999998754
No 410
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.12 E-value=0.028 Score=53.33 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5899999999999999999999999999998754
No 411
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.11 E-value=0.044 Score=43.35 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=30.0
Q ss_pred cEEEECC-ChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303 6 DIVIVGA-GIAGLTTSLGLYRLGI--RSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~-G~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
+|+|||+ |..|.++|+.|...++ ++.|+|....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 7999999 9999999999999885 6999998854
No 412
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.042 Score=49.51 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=33.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.|||+|+|.|+.=+.++..|+..|.+|+.||+++.-
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~Y 41 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYY 41 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCcc
Confidence 499999999999999999999999999999999853
No 413
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.03 E-value=0.16 Score=50.17 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=70.5
Q ss_pred CcccEEEECCChHHHHHHHHHHH---cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeee
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYR---LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATP 79 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (409)
.+.+++|||.|++|..+...+.+ .-++|+++-..+.+...- +.+++ + ..
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R--i~Ls~--------------v------------l~ 53 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR--ILLSS--------------V------------LA 53 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc--eeecc--------------c------------cC
Confidence 34699999999999999999888 346899998776643321 11111 0 00
Q ss_pred cCCCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCC
Q 015303 80 TISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDG 159 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 159 (409)
.. .....+ .+.+.++ +++ .+++++.+.+|+.|+.... .|+.+.|.++.+|-+|.|+|
T Consensus 54 ~~--~~~edi--------------~l~~~dw----y~~-~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATG 110 (793)
T COG1251 54 GE--KTAEDI--------------SLNRNDW----YEE-NGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATG 110 (793)
T ss_pred CC--ccHHHH--------------hccchhh----HHH-cCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecC
Confidence 00 000000 1111111 122 2789999999999987765 67788899999999999999
Q ss_pred Cch
Q 015303 160 VNS 162 (409)
Q Consensus 160 ~~S 162 (409)
...
T Consensus 111 S~p 113 (793)
T COG1251 111 SYP 113 (793)
T ss_pred ccc
Confidence 654
No 414
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.01 E-value=0.038 Score=50.22 Aligned_cols=36 Identities=28% Similarity=0.201 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+..+|.|||+|-.|.++|..|++.|++|.++++...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 456899999999999999999999999999998753
No 415
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.95 E-value=0.059 Score=42.29 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCc-eEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIR-SMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~-V~v~E~~~ 37 (409)
...|+|||+|-+|-+++..|++.|.+ |+|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 46899999999999999999999987 99999874
No 416
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.014 Score=52.93 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=36.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
|+..|||+|+|-|..=+.++..|+..|.+|+.+||++.-
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYY 39 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCC
Confidence 777899999999999999999999999999999999853
No 417
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.92 E-value=0.036 Score=50.88 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|.|||+|-.|.++|..|++.|++|.+++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999864
No 418
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.88 E-value=0.031 Score=46.68 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
....|.|||+|..|.-.|.-.+..|++|.|+|++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 346899999999999999999999999999998865
No 419
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.87 E-value=0.046 Score=49.49 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.+|.|||+|..|..+|..|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 479999999999999999999887 8999998533
No 420
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.84 E-value=0.043 Score=51.13 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999864
No 421
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.81 E-value=0.038 Score=50.70 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||+|..|...|..|++.|++|+++++.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 799999999999999999999999999998643
No 422
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.72 E-value=0.037 Score=53.34 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.-+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45899999999999999999999999999998754
No 423
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.72 E-value=0.05 Score=44.29 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||-|-.|...|..|.++|++|.++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 4899999999999999999999999999998753
No 424
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.70 E-value=0.15 Score=47.98 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeEE-EEecCC--cEEeccEEEecCCCc-hH
Q 015303 105 VRRKLLLETLAKEL--PSGTIRYSSQVVSIEESGHFKL-LHLADG--TILKTKVLIGCDGVN-SI 163 (409)
Q Consensus 105 i~r~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g--~~~~ad~vV~AdG~~-S~ 163 (409)
+.-.+|.+.|.+.+ .++++..+++|+++..++++++ +.+.++ .+++||.+|.|+|.| |.
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 45566666666654 3789999999999998888766 444555 379999999999999 75
No 425
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.69 E-value=0.059 Score=49.02 Aligned_cols=35 Identities=23% Similarity=0.489 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
..+|+|||+|-.|.++|+.|+..|+ ++.|+|.+..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 4699999999999999999999997 7999998643
No 426
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.63 E-value=0.039 Score=49.37 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|.|||.|..|.++|..|+++|++|.++|+++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 427
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.62 E-value=0.047 Score=51.23 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|+|+|+|+.|+.+|..|+..|.+|+++|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4899999999999999999999999999998754
No 428
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.57 E-value=0.4 Score=50.22 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHc-C-CceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRL-G-IRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~-g-~~V~v~E~~~~ 38 (409)
.+|+|||||.+|+-+|..+.+. | .+|+|+.+++.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~ 704 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 704 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence 4799999999999999998887 5 48999998753
No 429
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.56 E-value=0.066 Score=43.61 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=30.1
Q ss_pred cccEEEECCCh-HHHHHHHHHHHcCCceEEEeCC
Q 015303 4 VEDIVIVGAGI-AGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 4 ~~dv~IiG~G~-aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
..+|+|||+|- +|..+|..|.+.|.+|+++.|.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999996 6999999999999999999986
No 430
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.55 E-value=0.061 Score=45.47 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 4689999999999999999999998 8999998754
No 431
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.53 E-value=0.055 Score=49.64 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
...|+|||+|-.|..+|..|++.|+ +++|+|++..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4689999999999999999999998 8999998863
No 432
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.53 E-value=0.044 Score=52.09 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998754
No 433
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.45 E-value=0.054 Score=51.22 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHHHc----CCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRL----GIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~----g~~V~v~E~~~~~ 39 (409)
+.++=|||+|+|+|++|.+|-|- |-+|+|+|+.+.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 35788999999999999999884 4689999987643
No 434
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.43 E-value=0.57 Score=47.53 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.+|+|||||..|+-+|..+.+.|. +|+++.+++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 479999999999999999999996 6999887644
No 435
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.29 E-value=0.077 Score=46.25 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++..++|+|+|+.+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 346899999999999999999999999999997755
No 436
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.28 E-value=0.079 Score=43.59 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+|+|||+|-.|...|..|++.|+ +++++|.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999998 5999998753
No 437
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.27 E-value=0.062 Score=52.19 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998865
No 438
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.20 E-value=0.078 Score=46.11 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
..+|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4689999999999999999999997 7999998754
No 439
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.15 E-value=0.074 Score=45.67 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=29.3
Q ss_pred cEEEEC-CChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 6 DIVIVG-AGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 6 dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|.||| +|..|.++|..|++.|++|.++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999998764
No 440
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.14 E-value=0.073 Score=49.24 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~ 37 (409)
.+|+|||||-.|..+|..|+++| .+|++.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 48999999999999999999999 8999999984
No 441
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.13 E-value=0.081 Score=46.21 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4689999999999999999999997 7999997743
No 442
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.03 E-value=0.085 Score=48.43 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 4689999999999999999999999 8999998753
No 443
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.03 E-value=0.085 Score=47.98 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.+|+|||+|..|..+|..|+..|+ +|.++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999998644
No 444
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.99 E-value=0.073 Score=48.71 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++|.|||.|=.||..|..|++.|++|+.+|.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3799999999999999999999999999998764
No 445
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.98 E-value=0.66 Score=46.16 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=40.7
Q ss_pred HHHHHHHHhhC--CCceEEeCCeEEEEEEe-CCeEE-E---EecCCc--EEeccEEEecCCCchHH
Q 015303 108 KLLLETLAKEL--PSGTIRYSSQVVSIEES-GHFKL-L---HLADGT--ILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v---~~~~g~--~~~ad~vV~AdG~~S~v 164 (409)
..+...|.+.+ .+++++.++.++++..+ ++.|. + ...+|+ .+.|+.||.|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 45666666654 47899999999998764 44432 2 223554 57899999999998754
No 446
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.98 E-value=0.076 Score=51.70 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998865
No 447
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.97 E-value=0.097 Score=41.52 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 7999998754
No 448
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.93 E-value=0.1 Score=44.43 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 4689999999999999999999998 5999998743
No 449
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.90 E-value=0.094 Score=45.32 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|-.|...|..|++.|. +++|+|.+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4689999999999999999999998 7999997743
No 450
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.80 E-value=0.1 Score=48.79 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
...|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 35899999999999999999999999999998764
No 451
>PRK08328 hypothetical protein; Provisional
Probab=93.75 E-value=0.11 Score=44.99 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4689999999999999999999998 6999987744
No 452
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.74 E-value=0.11 Score=47.04 Aligned_cols=36 Identities=17% Similarity=0.487 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
++.+|.|||+|-.|.++|+.|+..|+ ++.|+|....
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 35699999999999999999999886 6999998653
No 453
>PRK07208 hypothetical protein; Provisional
Probab=93.67 E-value=3.3 Score=40.31 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=38.9
Q ss_pred HHHHHHHHhhC--CCceEEeCCeEEEEEEeCCeE--EEEe--cCCc--EEeccEEEecCCCchHH
Q 015303 108 KLLLETLAKEL--PSGTIRYSSQVVSIEESGHFK--LLHL--ADGT--ILKTKVLIGCDGVNSIV 164 (409)
Q Consensus 108 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v--~v~~--~~g~--~~~ad~vV~AdG~~S~v 164 (409)
..|.+.|.+.+ .+++|+++++|++|..+++++ .++. .+|. ++.||.||.|...+...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~ 282 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELV 282 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHH
Confidence 34555555544 368999999999999887653 2332 2343 58899999888765544
No 454
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.61 E-value=0.1 Score=47.31 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
+|+|||+|-+|.++|..|+..|+ +|.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 69999999999999999999994 7999998754
No 455
>PRK05442 malate dehydrogenase; Provisional
Probab=93.58 E-value=0.11 Score=47.34 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=33.0
Q ss_pred CCCcccEEEECC-ChHHHHHHHHHHHcCC-------ceEEEeCCCC
Q 015303 1 MESVEDIVIVGA-GIAGLTTSLGLYRLGI-------RSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~-G~aGl~~A~~L~~~g~-------~V~v~E~~~~ 38 (409)
|+...+|.|||+ |..|.++|+.|...|+ ++.|+|....
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~ 46 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPA 46 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCc
Confidence 777889999998 9999999999998764 6999997643
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.58 E-value=0.11 Score=46.82 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|||.|.+|.+++..|++.|.+|+++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46899999999999999999999999999998843
No 457
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.58 E-value=0.12 Score=43.45 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|..|+..|..|++.|. +++++|.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 4689999999999999999999998 5999997743
No 458
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.50 E-value=0.12 Score=44.45 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4689999999999999999999998 8999997754
No 459
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.43 E-value=0.085 Score=53.76 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|.|||+|..|...|..++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998865
No 460
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.42 E-value=0.13 Score=44.67 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=30.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC-----------CceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLG-----------IRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g-----------~~V~v~E~~~~ 38 (409)
++.+|+|||+|-.|+.++..|++.| .+++|+|.+..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4679999999999999999999974 38899997744
No 461
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.42 E-value=0.3 Score=44.93 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=77.3
Q ss_pred cccEEEECCChHHHHHHHHHHH--cCCceEEEeCCCCcCCcccceeccccHHHHHHHcCchhHHHhccccccceeeeecC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYR--LGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSIVATPTI 81 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~--~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+..-+|||+|-+..+++..... .+.+|.+|--.+.....- .|-+.+ ||-.- .......+.+..+.
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmR-----PPLSKE------LW~~~--dpn~~k~lrfkqws 244 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMR-----PPLSKE------LWWYG--DPNSAKKLRFKQWS 244 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccC-----CCcchh------ceecC--CCChhhheeecccC
Confidence 4568999999888877766644 456888887665432110 010111 11000 00111222222221
Q ss_pred CCCcccccccccccccCCccceeccHHHHHHHHHhhCCCceEEeCCeEEEEEEeCCeEEEEecCCcEEeccEEEecCCCc
Q 015303 82 SGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGVN 161 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
|+. ..+-|. +....++..+|..... .++-+..+.+|+.|..++. .|++.||.+|.+|-+++|+|..
T Consensus 245 -Gke-Rsiffe-------pd~FfvspeDLp~~~n---GGvAvl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 245 -GKE-RSIFFE-------PDGFFVSPEDLPKAVN---GGVAVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGVR 310 (659)
T ss_pred -Ccc-ceeEec-------CCcceeChhHCccccc---CceEEEeccceEEeecccC--eEEecCCcEeehhheeeecCcC
Confidence 111 122232 2334566666655432 3678999999999988776 5678899999999999999986
Q ss_pred hH
Q 015303 162 SI 163 (409)
Q Consensus 162 S~ 163 (409)
-.
T Consensus 311 Pk 312 (659)
T KOG1346|consen 311 PK 312 (659)
T ss_pred cc
Confidence 54
No 462
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.40 E-value=0.1 Score=50.40 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|+|+|.|.+|+++|..|++.|++|++.|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3799999999999999999999999999997653
No 463
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=93.39 E-value=0.11 Score=46.91 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||.|..|...|..|++.|++|.++|+++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 3799999999999999999999999999998653
No 464
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.37 E-value=0.14 Score=43.19 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 4689999999999999999999998 5999997743
No 465
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.36 E-value=0.064 Score=41.32 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+.+|.|||+|-+|.++|..|.+.|+.|.-+..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 479999999999999999999999998877644
No 466
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.34 E-value=0.1 Score=49.26 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCCc
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESL 39 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|+|-|.+|+++|..|.+.|.+|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 458999999999999999999999999999987765
No 467
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.30 E-value=0.13 Score=45.96 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
.+|+|+|+|-+|.++|..|++.|. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999998 799999873
No 468
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.27 E-value=0.11 Score=48.83 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|-.|+.+|..|+. |++|+++|+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988885 999999998764
No 469
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=93.25 E-value=0.095 Score=53.31 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|.|||+|..|...|..++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998865
No 470
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.23 E-value=0.16 Score=42.80 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
..|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999866
No 471
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.23 E-value=0.15 Score=46.54 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC-CceEEEeCCCC
Q 015303 3 SVEDIVIVGAGIAGLTTSLGLYRLG-IRSMVLESSES 38 (409)
Q Consensus 3 ~~~dv~IiG~G~aGl~~A~~L~~~g-~~V~v~E~~~~ 38 (409)
.+.+|+|||+|-.|.++|+.|+..| .++.|+|.+..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 4569999999999999999999999 58999998754
No 472
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.22 E-value=0.15 Score=43.98 Aligned_cols=34 Identities=35% Similarity=0.461 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCc---eEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIR---SMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~---V~v~E~~~ 37 (409)
..+|+|+|+|-+|...|..|.+.|.+ |.|+||..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 35899999999999999999999975 99999874
No 473
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.21 E-value=0.11 Score=48.12 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.|+|+|+||.||+++..++..|. +|+++|+.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 59999999999999888888885 6778887654
No 474
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.17 E-value=0.11 Score=50.56 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
..|+|+|.|++|++++..|.+.|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999965
No 475
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.16 E-value=0.13 Score=49.60 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|+|+|++|++++..+...|.+|.++|.+..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35899999999999999999999999999998754
No 476
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.14 E-value=0.1 Score=46.99 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|..|..+|..|++.|++|+++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 489999999999999999999999999998753
No 477
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.08 E-value=0.16 Score=48.92 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|+|+|.|.+|+++|..|+++|.+|+++|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5799999999999999999999999999997654
No 478
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.06 E-value=0.24 Score=35.26 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=29.1
Q ss_pred cccEEEECCChHHHHHHHHHHHc-CCceEEEeC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRL-GIRSMVLES 35 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~-g~~V~v~E~ 35 (409)
..+++|+|+|-+|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45899999999999999999998 578999998
No 479
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.00 E-value=0.14 Score=45.79 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|.|||||..|.-.|..++..|++|+++|.++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 5899999999999999999998899999998843
No 480
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.99 E-value=0.12 Score=49.80 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 799999999999999999999999999998654
No 481
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.97 E-value=0.13 Score=46.65 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|+|+|+|-.|...|..|++.|.+|+++-|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 799999999999999999999988888877643
No 482
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.97 E-value=0.095 Score=46.19 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+-+|+|||||.+|.-+|..+..-|-+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4589999999999999999999999999999874
No 483
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.96 E-value=0.13 Score=49.36 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG--IRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g--~~V~v~E~~~~ 38 (409)
++|+|||.|-.|+.+|..|+++| ++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 37999999999999999999984 78999998764
No 484
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.92 E-value=0.13 Score=46.54 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 7 IVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 7 v~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
|.|||+|-.|..+|..|+..|+ +|+++|.++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 6899999999999999999887 9999998843
No 485
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.90 E-value=0.14 Score=45.47 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcC---CceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLG---IRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g---~~V~v~E~~~ 37 (409)
.+|.|||+|..|.++|..|.+.| .+|.+++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 37999999999999999999998 6888998764
No 486
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.87 E-value=0.14 Score=48.80 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|+|||-|.+|+++|..|.+.|++|+++|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4799999999999999999999999999997643
No 487
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.87 E-value=0.16 Score=45.57 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..|+|+|.|-+|.++|..|+..|.+|++++|..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999864
No 488
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=92.86 E-value=0.11 Score=52.93 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|.|||+|..|...|..++..|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 3699999999999999999999999999998865
No 489
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.86 E-value=0.18 Score=47.61 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
...|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 35799999999999999999999999999998754
No 490
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=0.15 Score=49.13 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..|+|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999999764
No 491
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.84 E-value=0.16 Score=49.01 Aligned_cols=38 Identities=37% Similarity=0.421 Sum_probs=33.2
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 1 MESVEDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 1 m~~~~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|..+--|+|||.|-+|+++|..|++.|++|++.|....
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence 44455799999999999999999999999999997653
No 492
>PRK08223 hypothetical protein; Validated
Probab=92.83 E-value=0.18 Score=44.66 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-ceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLTTSLGLYRLGI-RSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
+..|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 4689999999999999999999998 7999997754
No 493
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.75 E-value=0.14 Score=46.50 Aligned_cols=33 Identities=21% Similarity=0.501 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC--ceEEEeCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSE 37 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~ 37 (409)
.+|+|||+|..|.++|..|++.|+ +|.++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999985 899999864
No 494
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.73 E-value=0.14 Score=50.92 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 5 EDIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 5 ~dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
-.|+|+|+|..|-.+|..|.++|++|+++|+++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 4789999999999999999999999999998854
No 495
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.63 E-value=0.21 Score=41.95 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=29.5
Q ss_pred ccEEEECC-ChHHHHHHHHHHHcCCceEEEeCC
Q 015303 5 EDIVIVGA-GIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 5 ~dv~IiG~-G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
.+++|+|| |..|..+|..|++.|.+|.++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 58999997 999999999999999999999876
No 496
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=92.63 E-value=0.15 Score=46.07 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|..|..+|..|++.|++|.++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999998753
No 497
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.59 E-value=0.19 Score=45.48 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCC--ceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGI--RSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
+|.|||+|-.|.++|+.|...++ ++.|+|....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999999999886 6999997643
No 498
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.56 E-value=0.15 Score=49.35 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHH-HHHHHHHcCCceEEEeCCCC
Q 015303 4 VEDIVIVGAGIAGLT-TSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 4 ~~dv~IiG~G~aGl~-~A~~L~~~g~~V~v~E~~~~ 38 (409)
...|+|||.|-+|++ +|..|+++|++|++.|.+..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 347999999999999 69999999999999998654
No 499
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.49 E-value=0.16 Score=45.86 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceEEEeCCCC
Q 015303 6 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSES 38 (409)
Q Consensus 6 dv~IiG~G~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|..|...|..|++.|++|+++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 799999999999999999999999999998754
No 500
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.49 E-value=0.19 Score=47.04 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=30.1
Q ss_pred ccEEEEC-CChHHHHHHHHHHHcCCceEEEeCC
Q 015303 5 EDIVIVG-AGIAGLTTSLGLYRLGIRSMVLESS 36 (409)
Q Consensus 5 ~dv~IiG-~G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
..|+||| .|..|..+|..|.++|++|.+++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 5799999 8999999999999999999999985
Done!