BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015304
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 218/398 (54%), Gaps = 35/398 (8%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAV 92
PF++ DLG +V + LP + P YAVKCN G+ FDCAS +EI+ V
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 93 LALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPP 152
+GV P++IIYANPCK +SHI+YA + GV++ TFD V+EL K+ K HPK +++RI
Sbjct: 99 RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIS-T 157
Query: 153 DDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXX 212
DDS A+ L K+G ++ +LE A+ + V GV+FH+GS +T
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 213 XXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLR 272
VF+ LG N M +LDIGGGF T F+E A +I AL +FP +L L
Sbjct: 216 RFVFDMGTELGFN-MHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDL----KLT 270
Query: 273 VISEPGRFFTYSAFTLYTQIIGKRV----------HGEMRN----YWINDGKYGSFDWVN 318
+++EPGR++ SAFTL +I K+V H E Y++NDG YGSF+ +
Sbjct: 271 IVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCIL 330
Query: 319 YDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFS 378
YD A+ + + Y S V+GPTCD D++ + LPE++V +WL+F
Sbjct: 331 YDHAVVR------PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFE 384
Query: 379 EMGAYTRARGTNFNGYNTAAI-------PTYVVRSNRT 409
+MGAYT ++FNG+ + I P +VVR ++
Sbjct: 385 DMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 422
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 218/398 (54%), Gaps = 35/398 (8%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAV 92
PF++ DLG +V + LP + P YAVKCN G+ FDCAS +EI+ V
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 93 LALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPP 152
+GV P++IIYANPCK +SHI+YA + GV++ TFD V+EL K+ K HPK +++RI
Sbjct: 99 RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIS-T 157
Query: 153 DDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXX 212
DDS A+ L K+G ++ +LE A+ + V GV+FH+GS +T
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 213 XXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLR 272
VF+ LG N M +LDIGGGF T F+E A +I AL +FP +L L
Sbjct: 216 RFVFDMGTELGFN-MHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDL----KLT 270
Query: 273 VISEPGRFFTYSAFTLYTQIIGKRV----------HGEMRN----YWINDGKYGSFDWVN 318
+++EPGR++ SAFTL +I K+V H E Y++NDG YGSF+ +
Sbjct: 271 IVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCIL 330
Query: 319 YDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFS 378
YD A+ + + Y S V+GPTCD D++ + LPE++V +WL+F
Sbjct: 331 YDHAVVR------PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFE 384
Query: 379 EMGAYTRARGTNFNGYNTAAI-------PTYVVRSNRT 409
+MGAYT ++FNG+ + I P +VVR ++
Sbjct: 385 DMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 422
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
Length = 461
Score = 268 bits (684), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 209/384 (54%), Gaps = 28/384 (7%)
Query: 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEI 89
D+ FY+ DLG ++ + + + LP + P YAVKCN G+ FDCAS++EI
Sbjct: 36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 95
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRI 149
+ V +LGV P+RIIYANPCK VS IKYAAN GV + TFDS EL K+ + HPK L++RI
Sbjct: 96 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 155
Query: 150 KPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXX 209
DDS A L K+G + LLE A+ + VVGV+FH+GS T
Sbjct: 156 A-TDDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVVGVSFHVGSGCTDPETFVQAI 212
Query: 210 XXXXXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGS 269
VF+ A +G + M +LDIGGGF + F+E +I AL YFP++ S
Sbjct: 213 SDARCVFDMGAEVGFS-MYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSD----S 267
Query: 270 SLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRN--------------YWINDGKYGSFD 315
+R+I+EPGR++ SAFTL II K++ + + Y++NDG YGSF+
Sbjct: 268 GVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFN 327
Query: 316 WVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
+ YD A K + Y+S ++GPTCD D + LPE+ V DW+
Sbjct: 328 CILYDHAHVK------PLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWM 381
Query: 376 VFSEMGAYTRARGTNFNGYNTAAI 399
+F MGAYT A + FNG+ I
Sbjct: 382 LFENMGAYTVAAASTFNGFQRPTI 405
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
Length = 471
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 209/384 (54%), Gaps = 28/384 (7%)
Query: 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEI 89
D+ FY+ DLG ++ + + + LP + P YAVKCN G+ FDCAS++EI
Sbjct: 46 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 105
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRI 149
+ V +LGV P+RIIYANPCK VS IKYAAN GV + TFDS EL K+ + HPK L++RI
Sbjct: 106 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 165
Query: 150 KPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXX 209
DDS A L K+G + LLE A+ + VVGV+FH+GS T
Sbjct: 166 A-TDDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVVGVSFHVGSGCTDPETFVQAI 222
Query: 210 XXXXXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGS 269
VF+ A +G + M +LDIGGGF + F+E +I AL YFP++ S
Sbjct: 223 SDARCVFDMGAEVGFS-MYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSD----S 277
Query: 270 SLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRN--------------YWINDGKYGSFD 315
+R+I+EPGR++ SAFTL II K++ + + Y++NDG YGSF+
Sbjct: 278 GVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFN 337
Query: 316 WVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
+ YD A K + Y+S ++GPTCD D + LPE+ V DW+
Sbjct: 338 CILYDHAHVK------PLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWM 391
Query: 376 VFSEMGAYTRARGTNFNGYNTAAI 399
+F MGAYT A + FNG+ I
Sbjct: 392 LFENMGAYTVAAASTFNGFQRPTI 415
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 208/384 (54%), Gaps = 28/384 (7%)
Query: 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEI 89
D+ FY+ DLG ++ + + + LP + P YAV CN G+ FDCAS++EI
Sbjct: 30 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVXCNDSKAIVKTLAATGTGFDCASKTEI 89
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRI 149
+ V +LGV P+RIIYANPCK VS IKYAAN GV + TFDS EL K+ + HPK L++RI
Sbjct: 90 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 149
Query: 150 KPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXX 209
DDS A L K+G + LLE A+ + VVGV+FH+GS T
Sbjct: 150 A-TDDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVVGVSFHVGSGCTDPETFVQAI 206
Query: 210 XXXXXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGS 269
VF+ A +G + M +LDIGGGF + F+E +I AL YFP++ S
Sbjct: 207 SDARCVFDMGAEVGFS-MYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSD----S 261
Query: 270 SLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRN--------------YWINDGKYGSFD 315
+R+I+EPGR++ SAFTL II K++ + + Y++NDG YGSF+
Sbjct: 262 GVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFN 321
Query: 316 WVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
+ YD A K R Y+S ++GPTCD D + LPE+ V DW+
Sbjct: 322 CILYDHAHVK------PLLQKRPKPDERYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWM 375
Query: 376 VFSEMGAYTRARGTNFNGYNTAAI 399
+F MGAYT A + FNG+ I
Sbjct: 376 LFENMGAYTVAAASTFNGFQRPTI 399
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 217/398 (54%), Gaps = 35/398 (8%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAV 92
PF++ DLG +V + LP + P YAVKCN G+ FDCAS +EI+ V
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 93 LALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPP 152
+GV P++IIYANPCK +SHI+YA + GV++ TFD V+EL K+ K HPK +++RI
Sbjct: 99 RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIS-T 157
Query: 153 DDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXX 212
DDS A+ L K+G ++ +LE A+ + V GV+FH+GS +T
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 213 XXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLR 272
VF+ LG N M +LDIGGGF T F+E A +I AL +FP +L L
Sbjct: 216 RFVFDMGTELGFN-MHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDL----KLT 270
Query: 273 VISEPGRFFTYSAFTLYTQIIGKRV----------HGEMRN----YWINDGKYGSFDWVN 318
+++EPGR++ SAFTL +I K V H E Y++NDG YGSF+ +
Sbjct: 271 IVAEPGRYYVASAFTLAVNVIAKAVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCIL 330
Query: 319 YDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFS 378
YD A+ + + Y S V+GPTCD D++ + LPE++V +WL+F
Sbjct: 331 YDHAVVR------PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFE 384
Query: 379 EMGAYTRARGTNFNGYNTAAI-------PTYVVRSNRT 409
+MGAYT ++FNG+ + I P +VVR ++
Sbjct: 385 DMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 422
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 217/398 (54%), Gaps = 35/398 (8%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAV 92
PF++ DLG +V + LP + P YAV CN G+ FDCAS +EI+ V
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVACNDDWRVLGTLAALGTGFDCASNTEIQRV 98
Query: 93 LALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPP 152
+GV P++IIYANPCK +SHI+YA + GV++ TFD V+EL K+ K HPK +++RI
Sbjct: 99 RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIS-T 157
Query: 153 DDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXX 212
DDS A+ L K+G ++ +LE A+ + V GV+FH+GS +T
Sbjct: 158 DDSLARCRLSVKFGA--KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDS 215
Query: 213 XXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLR 272
VF+ LG N M +LDIGGGF T F+E A +I AL +FP +L L
Sbjct: 216 RFVFDMGTELGFN-MHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDL----KLT 270
Query: 273 VISEPGRFFTYSAFTLYTQIIGKRV----------HGEMRN----YWINDGKYGSFDWVN 318
+++EPGR++ SAFTL +I K+V H E Y++NDG YGSF+ +
Sbjct: 271 IVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCIL 330
Query: 319 YDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFS 378
YD A+ + + Y S V+GPTCD D++ + LPE++V +WL+F
Sbjct: 331 YDHAVVR------PLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFE 384
Query: 379 EMGAYTRARGTNFNGYNTAAI-------PTYVVRSNRT 409
+MGAYT ++FNG+ + I P +VVR ++
Sbjct: 385 DMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 422
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
Truncated 37 Residues From The C-Terminus, To 1.6
Angstrom Resolution
Length = 424
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 206/380 (54%), Gaps = 28/380 (7%)
Query: 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEI 89
D+ FY+ DLG ++ + + + LP + P YAVKCN G+ FDCAS++EI
Sbjct: 36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEI 95
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRI 149
+ V LGV +R+IYANPCK VS IKYAA+ GV + TFDS EL K+ + HPK L++RI
Sbjct: 96 QLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI 155
Query: 150 KPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXX 209
DDS A L K+G + LLE A+ + V+GV+FH+GS T
Sbjct: 156 -ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGSGCTDPDTFVQAV 212
Query: 210 XXXXXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGS 269
VF+ A +G + M +LDIGGGF + F+E S+I AL YFP++ S
Sbjct: 213 SDARCVFDMATEVGFS-MHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSD----S 267
Query: 270 SLRVISEPGRFFTYSAFTLYTQIIGKRV--------------HGEMRNYWINDGKYGSFD 315
+R+I+EPGR++ SAFTL II K+ + + Y++NDG YGSF+
Sbjct: 268 GVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFN 327
Query: 316 WVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
+ YD A K + Y+S ++GPTCD D + LPE+ V DW+
Sbjct: 328 CILYDHAHVK------ALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWM 381
Query: 376 VFSEMGAYTRARGTNFNGYN 395
+F MGAYT A + FNG+
Sbjct: 382 LFENMGAYTVAAASTFNGFQ 401
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
Length = 372
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 186/374 (49%), Gaps = 15/374 (4%)
Query: 21 STILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSN 80
+ ILK FY+ +V L +Q P + PHYAVKCN N
Sbjct: 6 NNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVN 65
Query: 81 FDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH 140
FDCAS SEI+ V+ +GVSP RII+A+ K + + +A + GV++ TFDS EL KI +H
Sbjct: 66 FDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYH 125
Query: 141 PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAAT 200
P C +++RI+ DD A L +K+G + EI LLE A+ + V+G++FH+GS +
Sbjct: 126 PNCKMILRIR-CDDPNAAVQLGNKFGANE--DEIRHLLEYAKQLDIEVIGISFHVGSGSR 182
Query: 201 KFXXXXXXXXXXXXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAY 260
F A +G +K +LDIGGG + + I +A+ +
Sbjct: 183 NPEAYYRAIKSSKEAFNEAISVG-HKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDF 241
Query: 261 FPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYD 320
FP + ++ +++EPGRFF L TQ+IGKRV + Y+ N+ YG F V ++
Sbjct: 242 FPED-----TVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFE 296
Query: 321 EAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEM 380
+++ S ++G TCD D + LPEL + DW+ F
Sbjct: 297 KSVP------TPQLLRDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSW 350
Query: 381 GAYTRARGTNFNGY 394
GAYT T+FNG+
Sbjct: 351 GAYTNVLTTSFNGF 364
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
Length = 372
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 186/374 (49%), Gaps = 15/374 (4%)
Query: 21 STILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSN 80
+ ILK FY+ +V L +Q P + PHYAVKCN N
Sbjct: 6 NNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVN 65
Query: 81 FDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH 140
FDCAS SEI+ V+ +GVSP RII+A+ K + + +A + GV++ TFDS EL KI +H
Sbjct: 66 FDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYH 125
Query: 141 PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAAT 200
P C +++RI+ DD A L +K+G + EI LLE A+ + V+G++FH+GS +
Sbjct: 126 PNCKMILRIR-CDDPNATVQLGNKFGANE--DEIRHLLEYAKQLDIEVIGISFHVGSGSR 182
Query: 201 KFXXXXXXXXXXXXVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAY 260
F A +G +K +LDIGGG + + I +A+ +
Sbjct: 183 NPEAYYRAIKSSKEAFNEAISVG-HKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDF 241
Query: 261 FPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYD 320
FP + ++ +++EPGRFF L TQ+IGKRV + Y+ N+ YG F V ++
Sbjct: 242 FPED-----TVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFE 296
Query: 321 EAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEM 380
+++ S ++G TCD D + LPEL + DW+ F
Sbjct: 297 KSVP------TPQLLRDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSW 350
Query: 381 GAYTRARGTNFNGY 394
GAYT T+FNG+
Sbjct: 351 GAYTNVLTTSFNGF 364
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 190/387 (49%), Gaps = 44/387 (11%)
Query: 34 FYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVL 93
F++ DLG +V ++Q + + I P Y VKCN G+ F C+S++E+ V
Sbjct: 40 FFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQ 99
Query: 94 ALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPD 153
LGVSP+ II+ +PCK VS IKYAA VGVN+ T D+ EL KI + HP +L+ I D
Sbjct: 100 ELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATED 159
Query: 154 DSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXXX 213
+ G + + K+G + LLE A+ + ++GV FH+ SA ++
Sbjct: 160 NIGGEDG-NMKFGTT--LKNCRHLLECAKELDVQIIGVKFHVSSACKEYQVYVHALSDAR 216
Query: 214 XVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRV 273
VF+ A G M +LDIGGGF+ T +E +I L YFP GS +++
Sbjct: 217 CVFDMAGEFGFT-MNMLDIGGGFTGTEIQ---LEEVNHVISPLLDIYFPE----GSGIQI 268
Query: 274 ISEPGRFFTYSAFTLYTQIIGKRV-------HGEMRN--------YWINDGKYGSF---- 314
ISEPG ++ SAFTL II K+V G +N Y++NDG YGSF
Sbjct: 269 ISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKL 328
Query: 315 --DWVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVT 372
D E K + S ++GP+CD D++ LPEL V
Sbjct: 329 SEDLNTIPEVHKK------------YKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVG 376
Query: 373 DWLVFSEMGAYTRARGTNFNGYNTAAI 399
DWL+F MGA + + FN + AI
Sbjct: 377 DWLIFDNMGADSFHEPSAFNDFQRPAI 403
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 187/366 (51%), Gaps = 24/366 (6%)
Query: 34 FYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVL 93
F+I D V + +P + P +AVKCN G FDCAS +EI+ VL
Sbjct: 28 FWIFDTEGVEKAVERWKKNMPTVRPCFAVKCNPEPHLVKLLGELGCGFDCASLNEIKEVL 87
Query: 94 ALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPD 153
LG +P+ I Y+ KP + + A+++G+N T DS++E+ KI K+ PK ++IRI +
Sbjct: 88 DLGFNPEDITYSQTFKPYNQLIEASHLGINHTIVDSIDEVQKIAKYAPKMGIMIRIM-EN 146
Query: 154 DSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXXX 213
D+ A H K+G+ H E+ +L+ + GL++ GV FH+GS +
Sbjct: 147 DTSAGHVFGEKFGL--HDDEVEIVLKEIKDKGLNLDGVHFHVGSDSHNSEVFTKALTKAR 204
Query: 214 XVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRV 273
A + G K ++DIGGGF S F+E A+ I++ + EL R
Sbjct: 205 NTVTLAEQFG-MKPYLIDIGGGF----SQVAPFEEFAATIEKTI-----KELEFPERTRF 254
Query: 274 ISEPGRFFTYSAFTLYTQIIGKRV---HGEMR-NYWINDGKYGSFDWVNYDEAIAKCXXX 329
I+EPGR+ +AF L + + GKRV +G+ + Y DG +GSF + E C
Sbjct: 255 IAEPGRYMASNAFHLVSSLHGKRVRIQNGKKQIEYTSGDGLHGSFGCCIWFEKQKSC--- 311
Query: 330 XXXXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEV-TDWLVFSEMGAYTRARG 388
+ Y S ++GP+C+ +D+V + +LPE+E DWL+F MGAYT +
Sbjct: 312 --ECITQKVNENTKMYESIIYGPSCNGSDKV-ATQELPEMEPGKDWLLFPNMGAYTISMA 368
Query: 389 TNFNGY 394
TNFNG+
Sbjct: 369 TNFNGF 374
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLJ|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLK|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
pdb|2PLK|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
Length = 419
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 171/380 (45%), Gaps = 23/380 (6%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAV 92
P +LD V+ Y + + LP + HYA+K G++FD A+ E+E V
Sbjct: 56 PLLLLDCDVIRQQYRALKNALPNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELV 115
Query: 93 LALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPP 152
+ GV D I+ +P K + I+ A G N+ D++ EL K + + +LL+R+
Sbjct: 116 ASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLS-F 174
Query: 153 DDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXX 212
+S A L K+G P++ + ++E A+ + + G++FH+GS T
Sbjct: 175 RNSEAFADLSKKFGCS--PEQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTC 232
Query: 213 XXVFETAARLGNNKMRVLDIGGGFSFT-NSNTKSFQEAASIIKEALHAYFPNELLPGSSL 271
V E G + LDIGGGF + + I EAL LLP ++
Sbjct: 233 RHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEAL------SLLP-ETV 285
Query: 272 RVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCXXXXX 331
V++EPGRF A T ++G+ Y+++DG YGSF + +D+A
Sbjct: 286 HVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDA--------- 336
Query: 332 XXXXXXXXXXXRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNF 391
S + GPTCD+ D + LP+L D ++ MGAYT A T+F
Sbjct: 337 RYPLTTIKQGGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDF 396
Query: 392 NGY---NTAAIPTYVVRSNR 408
N + T A+ +V S R
Sbjct: 397 NFFKRAQTIALNEFVASSER 416
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 32/345 (9%)
Query: 60 YAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119
YA+K N S DC S EI+ L G+ P RI+++ K I+ A
Sbjct: 63 YALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALK 122
Query: 120 VGVNLTTFDSVEELHKI----RKWHPKCDLLIRIKPPDDSGAKHPL------DSKYGVDH 169
+ + +S EL I + K + IRI P D+ HP ++K+GV
Sbjct: 123 LNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKT-HPYLSTGLKENKFGVGE 181
Query: 170 HPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLGNNKMRV 229
+ + L A +++ L V V FHIGS + ++ LG + +R
Sbjct: 182 K-EALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGID-LRF 239
Query: 230 LDIGGGF--SFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFT 287
D+GGG S+ N T + A I AL G L +I EPGR +
Sbjct: 240 FDVGGGIGVSYENEETIKLYDYAQGILNALQ---------GLDLTIICEPGRSIVAESGE 290
Query: 288 LYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNS 347
L TQ++ ++ + + + I D G D++ AK
Sbjct: 291 LITQVLYEK-KAQNKRFVIVDA--GMNDFLRPSLYHAK-----HAIRVITPSKGREISPC 342
Query: 348 KVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFN 392
V GP C+++D LPELE D + ++GAY + + +N
Sbjct: 343 DVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYN 387
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 32/345 (9%)
Query: 60 YAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119
YA+K N S DC S EI+ L G+ P RI+++ K I+ A
Sbjct: 63 YALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALK 122
Query: 120 VGVNLTTFDSVEELHKI----RKWHPKCDLLIRIKPPDDSGAKHPL------DSKYGVDH 169
+ + +S EL I + K + IRI P D+ HP ++K+GV
Sbjct: 123 LNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKT-HPYISTGLKENKFGVGE 181
Query: 170 HPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLGNNKMRV 229
+ + L A +++ L V V FHIGS + ++ LG + +R
Sbjct: 182 K-EALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGID-LRF 239
Query: 230 LDIGGGF--SFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFT 287
D+GGG S+ N T + A I AL G L +I EPGR +
Sbjct: 240 FDVGGGIGVSYENEETIKLYDYAQGILNALQ---------GLDLTIICEPGRSIVAESGE 290
Query: 288 LYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNS 347
L TQ++ ++ + + + I D G D++ AK
Sbjct: 291 LITQVLYEK-KAQNKRFVIVDA--GMNDFLRPSLYHAK-----HAIRVITPSKGREISPC 342
Query: 348 KVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFN 392
V GP C+++D LPELE D + ++GAY + + +N
Sbjct: 343 DVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYN 387
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 132/351 (37%), Gaps = 36/351 (10%)
Query: 57 HPH---YAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSH 113
+PH YAVK N GS FD S E+E VLA G P +++++ K +
Sbjct: 76 YPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAE 135
Query: 114 IKYAANVGVNLTTFDSVEELHKIRK----WHPKCDLLIRIKPPDDSGAKHPL------DS 163
+K A + + +S EL ++ K K + +RI PD HP D+
Sbjct: 136 MKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRIN-PDVDAKTHPYISTGLRDN 194
Query: 164 KYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLG 223
K+G+ V L A L V G+ HIGS T + ++ G
Sbjct: 195 KFGITFDRAAQVYRL-AHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEG 253
Query: 224 NNKMRVLDIGGGFSFTNSNTKSFQ--EAASIIKEALHAYFPNELLPGSSLRVISEPGRFF 281
+ +R LD+GGG + Q E A + + L + L +I EPGR
Sbjct: 254 IH-IRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLERH--------RDLELIFEPGRAI 304
Query: 282 TYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCXXXXXXXXXXXXXXX 341
+A L T++ + H E +N+ I D ++ I
Sbjct: 305 AANAGVLVTKVEFLK-HTEHKNFAIIDAA--------MNDLIRPALYQAWQDIIPLRPRQ 355
Query: 342 XRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFN 392
+ GP C+ +D + L L+ D L GAY +N+N
Sbjct: 356 GEAQTYDLVGPVCETSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYN 405
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus
pdb|2P3E|B Chain B, Crystal Structure Of Aq1208 From Aquifex Aeolicus
Length = 420
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 133/349 (38%), Gaps = 28/349 (8%)
Query: 60 YAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119
YAVK N G+ D S E+ G+ P+RI+YA K + A +
Sbjct: 62 YAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVD 121
Query: 120 VGVNLTTFDSVEELHKIR----KWHPKCDLLIRIKPPDDSGAKHPL------DSKYGVDH 169
+ + +S +EL + K K + IR+ P D HP SK+GVD
Sbjct: 122 SEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKT-HPYIATGMQKSKFGVDI 180
Query: 170 HPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLGNNKMRV 229
+ A++ L +VG+ HIGS ++E+ + G + ++
Sbjct: 181 REAQ-KEYEYASKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFD-IKY 238
Query: 230 LDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLY 289
LDIGGG + + A + + L N ++I EPGR +A L
Sbjct: 239 LDIGGGLGI-KYKPEDKEPAPQDLADLLKDLLEN-----VKAKIILEPGRSIMGNAGILI 292
Query: 290 TQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNSKV 349
TQ+ + G +++ I D ++ I + + +
Sbjct: 293 TQVQFLKDKGS-KHFIIVDA--------GMNDLIRPSIYNAYHHIIPVETKERKKVVADI 343
Query: 350 FGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAA 398
GP C+ D + ++ E++ ++L GAY A +++N AA
Sbjct: 344 VGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAA 392
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
pdb|1KO0|A Chain A, Crystal Structure Of A D,L-Lysine Complex Of
Diaminopimelate Decarboxylase
Length = 425
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 135/353 (38%), Gaps = 72/353 (20%)
Query: 78 GSNFDCASRSEIEAVLALG----VSPDRIIYANPC------KPVSHIKYAANVGVNLTTF 127
G D S EIE LA G PD I++ + VS ++ N G
Sbjct: 69 GVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAG------ 122
Query: 128 DSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLD-----SKYGVDHHPQEIVPLLEAAE 182
SV+ L ++ + P + +R+ P G + SK+G+ + ++ L+ +
Sbjct: 123 -SVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWY--TDLPAALDVIQ 179
Query: 183 ASGLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLGNNKMRVLDIGGGFSFTNS- 241
L +VG+ HIGS V E ++ + GGG S
Sbjct: 180 RHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFG-----QDLQAISAGGGLSVPYQQ 234
Query: 242 -----NTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQI---- 292
+T+ + + +E + + G +++ EPGRF + L TQ+
Sbjct: 235 GEEAVDTEHYYGLWNAAREQIARHL------GHPVKLEIEPGRFLVAQSGVLITQVRSVK 288
Query: 293 -IGKRVHGEMRNYWIND----GKYGSFDWVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNS 347
+G R H + + ND YGS+ ++ A + T +
Sbjct: 289 QMGSR-HFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAP------------TVET 335
Query: 348 KVFGPTCDAADEVFSGHK--------LPELEVTDWLVFSEMGAYTRARGTNFN 392
V GP C++ D VF+ + LPE++ D+LV + GAY + +N+N
Sbjct: 336 VVAGPLCESGD-VFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYN 387
>pdb|2YXX|A Chain A, Crystal Structure Analysis Of Diaminopimelate
Decarboxylate (Lysa)
Length = 386
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 133/359 (37%), Gaps = 43/359 (11%)
Query: 58 PHYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYA 117
P +AVK N G D ++ E+ A GV +++ K ++
Sbjct: 41 PTFAVKANNNPVLLKILREEGFGXDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQXEHF 100
Query: 118 ANVGVNLTTFDSVEELHKIRKWHPK-CDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVP 176
V + DS EE R+ +P+ + IR+ P D+ HP S G+ H I P
Sbjct: 101 LREDVRIVNVDSFEEXEIWRELNPEGVEYFIRVNPEVDA-KTHPHIST-GLKKHKFGI-P 157
Query: 177 LLE----AAEASGLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLGNNKMRVLDI 232
L + ++ G+ HIGS T+ V + R G + ++I
Sbjct: 158 LEDLDSFXERFRSXNIRGLHVHIGSQITRV---EPFVEAFSKVVRASERYGFEE---INI 211
Query: 233 GGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSL--RVISEPGRFFTY-SAFTLY 289
GGG+ S +E + + +++P RVI E GR+ S + L
Sbjct: 212 GGGWGINYSG-----------EELDLSSYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLL 260
Query: 290 TQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCXXXXXXXXXXXXXXXXRTYNSKV 349
++ KR H + + + DG + + + + V
Sbjct: 261 RVVLVKRRHN--KAFVVVDGGXN---------VLIRPALYSAYHRIFVLGKQGKEXRADV 309
Query: 350 FGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYV-VRSN 407
GP C++ D + +LPE+E D + GAY T N YN+ P V VR N
Sbjct: 310 VGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGY---TXSNNYNSTTRPAEVLVREN 365
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
pdb|3VAB|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
Length = 443
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 21/260 (8%)
Query: 60 YAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119
YA+ N G+ D S+ EI LA G+ +RI+++ K + +A
Sbjct: 79 YALXANSNQAVLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALE 138
Query: 120 VGVNLTTFDSVEELHKIRKWHPKCDLL----IRIKPPDDSGAKHPL-----DSKYGVDHH 170
G+ +S EL + + +RI P D+ + ++K+G+
Sbjct: 139 AGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGI--- 195
Query: 171 PQEIVPLLEAAEAS--GLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLGNNKMR 228
P++ A AS GL+VVG+ HIGS + + G+N +R
Sbjct: 196 PRDKARAAYARAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHN-IR 254
Query: 229 VLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTL 288
+D+GGG + +A + + L+ + EPGR +A L
Sbjct: 255 HVDVGGGLGIPYRTPNTPPPPP-----VAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLL 309
Query: 289 YTQIIGKRVHGEMRNYWIND 308
T++I + G+ +N+ I D
Sbjct: 310 VTEVIFVK-EGDAKNFVIVD 328
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From
Butirosin Biosynthesis
Length = 428
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 31 EVPFYILDLGVVVTLYNQMISKL-PMIHPHYAVKCNXXXXXXXXXXXXGSNFDCASRSEI 89
E PFY+ D + Y Q+ S+ P I + ++K N G + AS E+
Sbjct: 16 ETPFYLYDGDFIEAHYRQLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGEL 75
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPK----CDL 145
G S + II++ P K S ++ A G+ +SVEEL I + K +
Sbjct: 76 ALARHAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARV 135
Query: 146 LIRIKPPDDSGA 157
IRI P G+
Sbjct: 136 AIRINPDKSFGS 147
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|C Chain C, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|D Chain D, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
Length = 434
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 130/371 (35%), Gaps = 49/371 (13%)
Query: 60 YAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119
YA K N G D S E+ V +I++ CK I
Sbjct: 66 YAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE 125
Query: 120 VGVNLTTFDSVEELHKI----RKWHPKCDLLIRIKPPDDSGAKHPLDS------KYGVDH 169
+ DS+ EL I ++ ++ RI P+ + HP S K+G+D
Sbjct: 126 ANIRAFNVDSISELILINETAKELGETANVAFRIN-PNVNPKTHPKISTGLKKNKFGLDV 184
Query: 170 HPQEIVPLLEAA-EASGLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLGNNKMR 228
+ ++ A E ++VVGV HIGS T V + L +
Sbjct: 185 ESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDI---SPFIEETRKVMDFVVELKEEGIE 241
Query: 229 VLDI--GGGFS---FTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTY 283
+ D+ GGG + + + ++ A I + Y +P +I EPGR
Sbjct: 242 IEDVNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMP----NLILEPGRSLVA 297
Query: 284 SAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYD--EAIAKCXXXXXXXXXXXXXXX 341
+A L ++ + + I+ G Y+ I C
Sbjct: 298 TAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC--------------- 342
Query: 342 XRTYNSK----VFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTA 397
+ N K + G C+++D +L ++EV D L ++GAY + N YN
Sbjct: 343 -KVKNEKEVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANN---YNAR 398
Query: 398 AIPTYVVRSNR 408
P V+ S +
Sbjct: 399 GRPRMVLTSKK 409
>pdb|1TUF|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
pdb|1TUF|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
Length = 434
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/371 (21%), Positives = 129/371 (34%), Gaps = 49/371 (13%)
Query: 60 YAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119
YA N G D S E+ V +I++ CK I
Sbjct: 66 YAYXANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE 125
Query: 120 VGVNLTTFDSVEELHKI----RKWHPKCDLLIRIKPPDDSGAKHPLDS------KYGVDH 169
+ DS+ EL I ++ ++ RI P+ + HP S K+G+D
Sbjct: 126 ANIRAFNVDSISELILINETAKELGETANVAFRIN-PNVNPKTHPKISTGLKKNKFGLDV 184
Query: 170 HPQEIVPLLEAA-EASGLSVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAARLGNNKMR 228
+ ++ A E ++VVGV HIGS T V + L +
Sbjct: 185 ESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDI---SPFIEETRKVMDFVVELKEEGIE 241
Query: 229 VLDI--GGGFS---FTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTY 283
+ D+ GGG + + + ++ A I + Y +P +I EPGR
Sbjct: 242 IEDVNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMP----NLILEPGRSLVA 297
Query: 284 SAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYD--EAIAKCXXXXXXXXXXXXXXX 341
+A L ++ + + I+ G Y+ I C
Sbjct: 298 TAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINC--------------- 342
Query: 342 XRTYNSK----VFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTA 397
+ N K + G C+++D +L ++EV D L ++GAY + N YN
Sbjct: 343 -KVKNEKEVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANN---YNAR 398
Query: 398 AIPTYVVRSNR 408
P V+ S +
Sbjct: 399 GRPRMVLTSKK 409
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKV|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 89/287 (31%), Gaps = 53/287 (18%)
Query: 59 HYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAA 118
HYA K G D + E+ L P+RI K VS + A
Sbjct: 68 HYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAV 127
Query: 119 NVGVNLTTFDSVEELHKIRKWHPKC----DLLIRIKPPDDSGAKHPLDSKYGVDHHPQEI 174
GV DS+ E+ ++ + D+L+R+ GV+ H E
Sbjct: 128 KAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRL--------------TVGVEAHTHEF 173
Query: 175 VPLLEAAEASGLSV--------------------VGVAFHIGSAATKFXXXXXXXXXXXX 214
+ + GLSV VG+ HIGS
Sbjct: 174 ISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIG 233
Query: 215 VF-ETAARLGNNK---MRVLDIGGGFSFT---NSNTKSFQEAAS-----IIKEALHAYFP 262
+ + G K + +D+GGG + + + E A+ + E+ P
Sbjct: 234 LLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLP 293
Query: 263 NELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDG 309
L R I+ PG Y T+ + H R Y DG
Sbjct: 294 TPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAH---RRYVSVDG 337
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|B Chain B, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|C Chain C, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|D Chain D, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
Length = 467
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 88/287 (30%), Gaps = 53/287 (18%)
Query: 59 HYAVKCNXXXXXXXXXXXXGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAA 118
HYA G D + E+ L P+RI K VS + A
Sbjct: 70 HYAAXAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAV 129
Query: 119 NVGVNLTTFDSVEELHKIRKWHPKC----DLLIRIKPPDDSGAKHPLDSKYGVDHHPQEI 174
GV DS+ E+ ++ + D+L+R+ GV+ H E
Sbjct: 130 KAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRL--------------TVGVEAHTHEF 175
Query: 175 VPLLEAAEASGLSV--------------------VGVAFHIGSAATKFXXXXXXXXXXXX 214
+ + GLSV VG+ HIGS
Sbjct: 176 ISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIG 235
Query: 215 VF-ETAARLGNNK---MRVLDIGGGFSFT---NSNTKSFQEAAS-----IIKEALHAYFP 262
+ + G K + +D+GGG + + + E A+ + E+ P
Sbjct: 236 LLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLP 295
Query: 263 NELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDG 309
L R I+ PG Y T+ + H R Y DG
Sbjct: 296 TPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAH---RRYVSVDG 339
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 117 AANVGVNLT-TFDSVEELHKI-----RKWHPKCDLLIRIKPPD-------DSGAKHPLDS 163
AA G N+T T + + EL I ++ PK ++ +R++ SG ++S
Sbjct: 146 AAEXGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGG---INS 202
Query: 164 KYGVDHHPQEIVPLLEAAEASGL--SVVGVAFHIGSAATKFXXXXXXXXXXXXVFETAAR 221
K+G+ E++ + + + L + FH+GS T+ ++ +
Sbjct: 203 KFGLT--STELIEAVNLLKENKLLEQFTXIHFHLGSQITEIHPLKKALNEAGNIYTELRK 260
Query: 222 LGNNKMRVLDIGGGFSFTNSNTKS 245
G ++ +++GGG + S K+
Sbjct: 261 XGAKNLKAINLGGGLAVEYSQFKN 284
>pdb|3MT1|A Chain A, Crystal Structure Of Putative Carboxynorspermidine
Decarboxylase Protein From Sinorhizobium Meliloti
pdb|3MT1|B Chain B, Crystal Structure Of Putative Carboxynorspermidine
Decarboxylase Protein From Sinorhizobium Meliloti
Length = 365
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 344 TYNSKVFGPTCDAADEVFSGHKLPE-LEVTDWLVFSEMGAYTRARGTNFNGYNTAAI 399
+++ + G +C A D VF + E L+V D + F + YT + FNG AI
Sbjct: 285 SHSYXICGKSCLAGD-VFGEFRFAEELKVGDRISFQDAAGYTXVKKNWFNGVKXPAI 340
>pdb|2ZQK|A Chain A, Crystal Structure Of Intimin-Tir68 Complex
pdb|2ZQK|B Chain B, Crystal Structure Of Intimin-Tir68 Complex
pdb|3NCW|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|C Chain C, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|D Chain D, Crystal Structure Of Ehec O157:h7 Intimin
Length = 189
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 292 IIGKRVHGEMRNYWINDGKY--------GSFDWVNYDEAIA 324
IIG V GE+ N W+ G++ G++ W + + +IA
Sbjct: 19 IIGNNVRGELPNIWLQYGQFKLKASGGDGTYSWYSENTSIA 59
>pdb|3NCX|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin Mutant
pdb|3NCX|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin Mutant
Length = 189
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 292 IIGKRVHGEMRNYWINDGKY--------GSFDWVNYDEAIA 324
IIG V GE+ N W+ G++ G++ W + + +IA
Sbjct: 19 IIGNNVRGELPNIWLQYGQFKLKASGGDGTYSWYSENTSIA 59
>pdb|2ZWK|A Chain A, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|C Chain C, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|E Chain E, Crystal Structure Of Intimin-Tir90 Complex
Length = 184
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 292 IIGKRVHGEMRNYWINDGKY--------GSFDWVNYDEAIA 324
IIG V GE+ N W+ G++ G++ W + + +IA
Sbjct: 14 IIGNNVRGELPNIWLQYGQFKLKASGGDGTYSWYSENTSIA 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,041,800
Number of Sequences: 62578
Number of extensions: 409857
Number of successful extensions: 1013
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 38
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)