Query 015304
Match_columns 409
No_of_seqs 212 out of 1688
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0622 Ornithine decarboxylas 100.0 1.7E-77 3.6E-82 561.8 39.4 375 15-406 36-426 (448)
2 cd06831 PLPDE_III_ODC_like_AZI 100.0 3.6E-75 7.8E-80 575.2 43.1 364 27-408 9-387 (394)
3 COG0019 LysA Diaminopimelate d 100.0 1.5E-73 3.2E-78 558.4 40.5 357 27-402 23-394 (394)
4 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 5.1E-70 1.1E-74 536.0 42.1 349 28-401 9-367 (368)
5 cd06830 PLPDE_III_ADC Type III 100.0 5.7E-70 1.2E-74 542.4 39.4 359 27-401 1-408 (409)
6 cd06836 PLPDE_III_ODC_DapDC_li 100.0 5.7E-69 1.2E-73 530.8 41.9 356 33-402 4-377 (379)
7 cd00622 PLPDE_III_ODC Type III 100.0 6.6E-68 1.4E-72 522.0 44.4 356 30-401 1-361 (362)
8 TIGR01048 lysA diaminopimelate 100.0 2.7E-68 5.9E-73 534.1 41.5 361 27-403 21-396 (417)
9 cd06828 PLPDE_III_DapDC Type I 100.0 1.3E-67 2.7E-72 522.4 41.3 357 29-401 1-372 (373)
10 PRK11165 diaminopimelate decar 100.0 5.2E-67 1.1E-71 522.5 42.2 354 27-402 22-397 (420)
11 PLN02537 diaminopimelate decar 100.0 7.9E-67 1.7E-71 521.6 41.5 355 28-403 14-386 (410)
12 cd06841 PLPDE_III_MccE_like Ty 100.0 3.5E-66 7.5E-71 512.3 41.4 352 28-403 4-376 (379)
13 cd06810 PLPDE_III_ODC_DapDC_li 100.0 6.5E-66 1.4E-70 509.2 42.1 356 32-401 1-367 (368)
14 cd06843 PLPDE_III_PvsE_like Ty 100.0 5.8E-66 1.3E-70 510.4 41.3 357 33-401 3-376 (377)
15 TIGR03099 dCO2ase_PEP1 pyridox 100.0 9.4E-66 2E-70 512.6 42.9 358 28-402 21-398 (398)
16 cd06839 PLPDE_III_Btrk_like Ty 100.0 1.2E-65 2.5E-70 509.8 42.3 359 27-401 3-381 (382)
17 cd06829 PLPDE_III_CANSDC Type 100.0 3.7E-65 8.1E-70 498.1 37.2 336 32-402 1-345 (346)
18 TIGR01047 nspC carboxynorsperm 100.0 1.2E-64 2.6E-69 499.2 37.6 344 29-402 1-359 (380)
19 PRK08961 bifunctional aspartat 100.0 2.8E-64 6.1E-69 541.4 42.5 350 28-402 500-859 (861)
20 cd06842 PLPDE_III_Y4yA_like Ty 100.0 1.8E-63 4E-68 497.7 35.6 353 27-401 6-422 (423)
21 PRK05354 arginine decarboxylas 100.0 5.6E-52 1.2E-56 425.6 41.0 375 13-402 48-562 (634)
22 TIGR01273 speA arginine decarb 100.0 2.1E-50 4.6E-55 413.9 41.5 374 12-402 40-555 (624)
23 PLN02439 arginine decarboxylas 100.0 2.2E-47 4.8E-52 387.2 37.3 354 36-401 3-487 (559)
24 PF02784 Orn_Arg_deC_N: Pyrido 100.0 8.4E-47 1.8E-51 353.4 23.7 241 38-284 1-251 (251)
25 cd00430 PLPDE_III_AR Type III 100.0 2.3E-36 5E-41 298.2 27.9 312 33-380 2-332 (367)
26 TIGR00492 alr alanine racemase 100.0 1.9E-33 4.1E-38 277.2 27.2 313 33-380 3-336 (367)
27 PRK00053 alr alanine racemase; 100.0 4.1E-32 8.8E-37 267.3 28.6 313 33-381 4-333 (363)
28 cd06827 PLPDE_III_AR_proteobac 100.0 1.3E-31 2.8E-36 261.6 27.6 307 33-380 2-323 (354)
29 cd06826 PLPDE_III_AR2 Type III 100.0 2.5E-31 5.4E-36 261.3 28.6 306 33-380 2-330 (365)
30 PRK13340 alanine racemase; Rev 100.0 1.8E-31 4E-36 265.7 27.6 307 33-381 41-371 (406)
31 COG1166 SpeA Arginine decarbox 100.0 1.4E-30 3E-35 252.6 27.2 276 13-297 64-377 (652)
32 cd06825 PLPDE_III_VanT Type II 100.0 4.6E-30 9.9E-35 252.2 27.4 314 33-380 2-333 (368)
33 COG0787 Alr Alanine racemase [ 100.0 1.1E-29 2.5E-34 243.3 28.0 307 33-380 5-328 (360)
34 cd06808 PLPDE_III Type III Pyr 100.0 4.4E-30 9.6E-35 234.0 23.5 190 42-241 1-196 (211)
35 PRK03646 dadX alanine racemase 100.0 6.3E-28 1.4E-32 235.6 26.8 306 33-380 4-324 (355)
36 cd06819 PLPDE_III_LS_D-TA Type 100.0 1.5E-28 3.2E-33 241.9 21.3 258 28-311 4-279 (358)
37 cd06815 PLPDE_III_AR_like_1 Ty 100.0 2.4E-27 5.2E-32 232.2 20.2 318 33-389 2-345 (353)
38 cd06812 PLPDE_III_DSD_D-TA_lik 100.0 3.5E-26 7.6E-31 226.3 28.5 198 27-240 2-218 (374)
39 PRK11930 putative bifunctional 100.0 3E-26 6.4E-31 247.6 27.4 324 13-380 444-789 (822)
40 cd06811 PLPDE_III_yhfX_like Ty 99.9 1.1E-24 2.3E-29 215.1 25.9 262 18-300 13-290 (382)
41 cd06818 PLPDE_III_cryptic_DSD 99.9 1E-24 2.2E-29 215.9 22.3 235 30-293 2-256 (382)
42 cd06821 PLPDE_III_D-TA Type II 99.9 7.5E-24 1.6E-28 208.7 20.6 254 27-310 5-276 (361)
43 cd06813 PLPDE_III_DSD_D-TA_lik 99.9 3E-23 6.6E-28 205.6 24.3 262 27-311 7-300 (388)
44 cd06820 PLPDE_III_LS_D-TA_like 99.9 1.6E-22 3.6E-27 198.6 23.3 252 30-311 2-269 (353)
45 PF00278 Orn_DAP_Arg_deC: Pyri 99.9 1.1E-22 2.4E-27 167.6 9.0 107 287-401 1-115 (116)
46 cd07376 PLPDE_III_DSD_D-TA_lik 99.9 1.8E-20 4E-25 183.5 18.5 240 41-311 1-262 (345)
47 cd00635 PLPDE_III_YBL036c_like 99.8 5.3E-19 1.2E-23 162.3 19.8 185 37-235 3-200 (222)
48 PF01168 Ala_racemase_N: Alani 99.8 7.2E-19 1.6E-23 161.1 17.2 182 37-235 1-192 (218)
49 cd06817 PLPDE_III_DSD Type III 99.8 4.8E-18 1E-22 167.7 23.5 193 28-235 3-223 (389)
50 cd06814 PLPDE_III_DSD_D-TA_lik 99.8 5.5E-18 1.2E-22 167.0 21.4 193 27-235 5-225 (379)
51 cd06824 PLPDE_III_Yggs_like Py 99.7 1.3E-14 2.9E-19 133.2 20.0 181 40-236 7-202 (224)
52 TIGR00044 pyridoxal phosphate 99.6 3.3E-13 7.1E-18 124.3 21.1 167 55-235 28-205 (229)
53 COG3616 Predicted amino acid a 99.5 5.2E-13 1.1E-17 128.8 16.1 196 27-235 14-218 (368)
54 COG3457 Predicted amino acid r 99.4 2.1E-11 4.6E-16 112.5 18.8 186 33-234 4-202 (353)
55 cd06822 PLPDE_III_YBL036c_euk 98.8 1.6E-06 3.6E-11 79.3 21.9 185 39-235 5-205 (227)
56 COG0325 Predicted enzyme with 98.4 5.4E-05 1.2E-09 68.0 19.7 180 39-233 7-200 (228)
57 PF00842 Ala_racemase_C: Alani 98.2 1.8E-06 3.9E-11 71.9 5.0 88 285-381 1-96 (129)
58 KOG3157 Proline synthetase co- 96.8 0.12 2.7E-06 45.7 15.6 179 40-237 9-213 (244)
59 PF07745 Glyco_hydro_53: Glyco 95.3 0.92 2E-05 44.0 15.6 142 80-260 3-163 (332)
60 COG3867 Arabinogalactan endo-1 94.6 3.7 8E-05 38.8 16.8 157 80-275 42-220 (403)
61 PF01261 AP_endonuc_2: Xylose 91.2 1.1 2.4E-05 39.7 8.3 100 173-282 28-137 (213)
62 cd07948 DRE_TIM_HCS Saccharomy 90.8 6.3 0.00014 37.0 13.1 26 171-197 169-195 (262)
63 PRK02308 uvsE putative UV dama 89.5 3.2 6.8E-05 39.9 10.1 105 126-236 43-158 (303)
64 PRK01060 endonuclease IV; Prov 89.5 3.5 7.6E-05 38.8 10.5 97 171-277 46-146 (281)
65 cd03174 DRE_TIM_metallolyase D 87.9 8.8 0.00019 35.7 11.9 152 33-197 12-201 (265)
66 TIGR03234 OH-pyruv-isom hydrox 84.6 33 0.00071 31.6 13.9 24 171-197 157-180 (254)
67 PRK12677 xylose isomerase; Pro 83.7 9.5 0.00021 38.0 10.2 100 174-278 69-180 (384)
68 TIGR01501 MthylAspMutase methy 82.2 18 0.00038 30.3 9.7 55 174-239 41-95 (134)
69 PRK13210 putative L-xylulose 5 80.3 13 0.00029 34.8 9.6 98 171-278 51-154 (284)
70 PRK13209 L-xylulose 5-phosphat 79.4 16 0.00036 34.3 9.9 102 165-278 52-159 (283)
71 cd02072 Glm_B12_BD B12 binding 77.8 39 0.00084 28.0 10.3 55 174-239 39-93 (128)
72 PRK04452 acetyl-CoA decarbonyl 77.8 5.5 0.00012 38.4 6.0 87 15-108 112-212 (319)
73 TIGR00542 hxl6Piso_put hexulos 76.4 26 0.00056 32.9 10.3 101 165-277 47-153 (279)
74 cd07939 DRE_TIM_NifV Streptomy 76.2 67 0.0015 29.9 13.5 26 171-197 167-193 (259)
75 PF01136 Peptidase_U32: Peptid 76.1 15 0.00033 33.5 8.3 82 68-150 5-92 (233)
76 cd07940 DRE_TIM_IPMS 2-isoprop 76.1 65 0.0014 30.2 12.8 31 165-197 166-200 (268)
77 PRK07379 coproporphyrinogen II 75.9 14 0.00031 36.9 8.7 57 30-88 75-138 (400)
78 PRK00208 thiG thiazole synthas 75.6 67 0.0014 29.8 12.1 113 10-128 70-204 (250)
79 PRK09856 fructoselysine 3-epim 75.4 23 0.0005 33.0 9.6 99 171-278 46-150 (275)
80 PF11823 DUF3343: Protein of u 74.9 9.2 0.0002 28.1 5.4 65 124-193 5-71 (73)
81 TIGR02090 LEU1_arch isopropylm 74.6 82 0.0018 31.1 13.6 26 171-197 169-195 (363)
82 PF04131 NanE: Putative N-acet 74.5 16 0.00035 32.3 7.5 73 65-140 79-166 (192)
83 TIGR01306 GMP_reduct_2 guanosi 73.4 71 0.0015 30.9 12.3 94 29-128 107-227 (321)
84 cd07943 DRE_TIM_HOA 4-hydroxy- 73.4 80 0.0017 29.5 12.8 27 171-197 169-196 (263)
85 PLN02746 hydroxymethylglutaryl 73.3 94 0.002 30.5 13.3 54 68-124 71-137 (347)
86 cd07943 DRE_TIM_HOA 4-hydroxy- 73.1 81 0.0018 29.4 13.6 85 110-208 87-175 (263)
87 PRK05567 inosine 5'-monophosph 73.1 41 0.0009 34.6 11.4 93 33-130 242-362 (486)
88 PRK11858 aksA trans-homoaconit 72.6 83 0.0018 31.2 13.1 26 171-197 173-199 (378)
89 TIGR02635 RhaI_grampos L-rhamn 72.3 59 0.0013 32.3 11.8 98 172-277 69-177 (378)
90 PTZ00372 endonuclease 4-like p 72.3 46 0.00099 33.4 11.0 96 171-276 175-274 (413)
91 TIGR00587 nfo apurinic endonuc 72.1 39 0.00085 31.7 10.3 97 172-279 46-148 (274)
92 TIGR01302 IMP_dehydrog inosine 72.0 70 0.0015 32.6 12.7 93 33-130 238-358 (450)
93 PRK15452 putative protease; Pr 71.8 1.2E+02 0.0026 30.9 14.1 111 37-150 43-166 (443)
94 TIGR02090 LEU1_arch isopropylm 71.5 60 0.0013 32.0 11.7 126 68-209 25-176 (363)
95 PRK07535 methyltetrahydrofolat 70.8 93 0.002 29.1 12.5 117 28-168 67-204 (261)
96 TIGR02631 xylA_Arthro xylose i 70.6 41 0.0009 33.4 10.4 99 174-278 70-181 (382)
97 TIGR03234 OH-pyruv-isom hydrox 69.7 36 0.00078 31.3 9.4 97 173-278 40-144 (254)
98 COG1082 IolE Sugar phosphate i 69.3 61 0.0013 29.9 11.0 100 171-277 44-146 (274)
99 PRK05904 coproporphyrinogen II 69.1 23 0.0005 34.8 8.2 51 33-86 67-124 (353)
100 smart00518 AP2Ec AP endonuclea 67.4 72 0.0016 29.7 11.0 57 171-231 44-104 (273)
101 PRK00278 trpC indole-3-glycero 67.4 1.1E+02 0.0024 28.6 16.6 112 56-192 50-187 (260)
102 cd07944 DRE_TIM_HOA_like 4-hyd 67.1 1.1E+02 0.0024 28.6 14.1 30 165-196 161-193 (266)
103 PF03851 UvdE: UV-endonuclease 66.3 25 0.00055 33.2 7.5 100 128-238 42-158 (275)
104 cd07939 DRE_TIM_NifV Streptomy 66.0 1.1E+02 0.0025 28.3 12.3 118 68-199 23-166 (259)
105 PRK08208 coproporphyrinogen II 64.3 31 0.00066 34.9 8.2 48 30-79 100-152 (430)
106 PRK05718 keto-hydroxyglutarate 64.0 1.1E+02 0.0025 27.6 11.3 106 37-151 24-136 (212)
107 cd00381 IMPDH IMPDH: The catal 63.7 1.5E+02 0.0032 28.8 12.9 92 33-129 108-227 (325)
108 cd07945 DRE_TIM_CMS Leptospira 63.5 1.3E+02 0.0028 28.5 11.8 26 171-197 175-202 (280)
109 PRK09249 coproporphyrinogen II 63.2 26 0.00055 35.7 7.5 48 30-79 111-162 (453)
110 TIGR02660 nifV_homocitr homoci 62.6 1.6E+02 0.0035 29.0 14.2 26 171-197 170-196 (365)
111 cd03174 DRE_TIM_metallolyase D 62.6 1.3E+02 0.0028 27.7 13.5 128 67-208 21-180 (265)
112 PRK09058 coproporphyrinogen II 62.3 50 0.0011 33.6 9.4 55 33-88 125-186 (449)
113 TIGR00538 hemN oxygen-independ 62.1 32 0.0007 35.0 8.0 43 37-79 116-162 (455)
114 PRK05718 keto-hydroxyglutarate 62.1 76 0.0016 28.7 9.5 82 37-125 48-132 (212)
115 cd00019 AP2Ec AP endonuclease 62.0 83 0.0018 29.4 10.4 98 171-278 44-144 (279)
116 PRK05660 HemN family oxidoredu 61.9 43 0.00093 33.2 8.7 48 30-79 67-118 (378)
117 TIGR02660 nifV_homocitr homoci 61.8 1.4E+02 0.0031 29.4 12.3 129 68-212 26-180 (365)
118 PRK08195 4-hyroxy-2-oxovalerat 61.3 1E+02 0.0023 30.0 11.0 148 35-197 20-200 (337)
119 PRK08599 coproporphyrinogen II 61.3 37 0.00081 33.5 8.1 48 30-79 60-111 (377)
120 cd07948 DRE_TIM_HCS Saccharomy 61.2 1.4E+02 0.0031 27.9 12.7 119 67-199 24-168 (262)
121 TIGR03217 4OH_2_O_val_ald 4-hy 60.8 1.7E+02 0.0037 28.5 13.6 26 171-197 171-199 (333)
122 PRK05458 guanosine 5'-monophos 60.1 1.5E+02 0.0032 28.8 11.7 92 33-128 113-230 (326)
123 PRK02261 methylaspartate mutas 59.7 1E+02 0.0022 25.7 9.3 54 174-238 43-96 (137)
124 TIGR00539 hemN_rel putative ox 59.5 38 0.00083 33.3 7.8 55 30-86 60-121 (360)
125 PRK09875 putative hydrolase; P 59.3 1.7E+02 0.0036 28.0 12.8 44 85-129 165-210 (292)
126 TIGR02708 L_lactate_ox L-lacta 59.3 95 0.0021 30.7 10.3 80 44-126 218-310 (367)
127 PRK11858 aksA trans-homoaconit 59.2 1.9E+02 0.0041 28.6 13.5 129 68-212 29-183 (378)
128 PRK13352 thiamine biosynthesis 59.2 81 0.0017 31.5 9.6 174 71-278 83-268 (431)
129 cd02809 alpha_hydroxyacid_oxid 59.0 98 0.0021 29.5 10.3 15 83-97 180-194 (299)
130 PRK13347 coproporphyrinogen II 59.0 45 0.00098 34.0 8.4 43 37-79 117-163 (453)
131 COG2185 Sbm Methylmalonyl-CoA 58.9 31 0.00067 29.1 5.9 67 55-123 40-117 (143)
132 TIGR03128 RuMP_HxlA 3-hexulose 57.9 1.4E+02 0.0029 26.5 12.8 84 43-128 40-133 (206)
133 TIGR01303 IMP_DH_rel_1 IMP deh 57.7 1.7E+02 0.0037 30.1 12.2 107 13-130 224-359 (475)
134 PRK09057 coproporphyrinogen II 57.7 62 0.0013 32.1 9.0 57 29-87 63-126 (380)
135 PRK09997 hydroxypyruvate isome 57.5 66 0.0014 29.7 8.7 95 174-277 42-144 (258)
136 cd07945 DRE_TIM_CMS Leptospira 57.2 1.8E+02 0.0038 27.6 12.0 29 171-199 146-174 (280)
137 PRK15447 putative protease; Pr 57.1 1.8E+02 0.004 27.8 13.2 99 37-140 45-153 (301)
138 cd00956 Transaldolase_FSA Tran 56.5 1.5E+02 0.0033 26.7 10.9 76 14-97 38-123 (211)
139 COG1139 Uncharacterized conser 56.0 2E+02 0.0044 29.0 11.7 76 61-139 108-187 (459)
140 PRK01130 N-acetylmannosamine-6 55.7 55 0.0012 29.6 7.6 58 68-129 26-96 (221)
141 COG0635 HemN Coproporphyrinoge 55.4 68 0.0015 32.3 8.8 58 29-88 95-160 (416)
142 cd02911 arch_FMN Archeal FMN-b 55.3 1.3E+02 0.0029 27.5 10.2 90 33-127 119-219 (233)
143 PRK05692 hydroxymethylglutaryl 55.1 1.9E+02 0.0042 27.4 12.4 27 171-198 183-211 (287)
144 PRK08195 4-hyroxy-2-oxovalerat 54.7 2.1E+02 0.0047 27.8 13.6 127 67-207 27-177 (337)
145 COG3010 NanE Putative N-acetyl 54.3 66 0.0014 29.0 7.4 70 68-140 117-202 (229)
146 PRK05848 nicotinate-nucleotide 53.0 1.5E+02 0.0033 27.9 10.3 49 68-120 169-222 (273)
147 cd03319 L-Ala-DL-Glu_epimerase 52.4 2E+02 0.0044 27.5 11.4 99 39-141 161-276 (316)
148 cd07940 DRE_TIM_IPMS 2-isoprop 52.0 1E+02 0.0022 28.8 9.0 147 36-199 16-170 (268)
149 cd04724 Tryptophan_synthase_al 51.8 1.5E+02 0.0031 27.4 9.9 62 56-119 77-150 (242)
150 cd07947 DRE_TIM_Re_CS Clostrid 50.8 2.2E+02 0.0048 26.9 13.5 27 171-197 185-214 (279)
151 PLN02274 inosine-5'-monophosph 50.6 3.1E+02 0.0067 28.5 13.2 97 29-130 259-382 (505)
152 PRK08446 coproporphyrinogen II 50.4 1E+02 0.0022 30.2 9.0 55 30-88 60-121 (350)
153 cd02811 IDI-2_FMN Isopentenyl- 49.5 2.2E+02 0.0047 27.6 11.1 87 38-128 162-284 (326)
154 cd07938 DRE_TIM_HMGL 3-hydroxy 49.4 2.3E+02 0.005 26.7 12.3 27 171-197 177-204 (274)
155 PRK13307 bifunctional formalde 48.9 2.9E+02 0.0063 27.6 12.2 85 33-123 173-278 (391)
156 cd08567 GDPD_SpGDE_like Glycer 48.2 2.2E+02 0.0047 26.2 10.6 31 109-139 219-251 (263)
157 TIGR03822 AblA_like_2 lysine-2 47.6 1.9E+02 0.0041 28.0 10.3 47 30-79 145-198 (321)
158 PRK09989 hypothetical protein; 47.1 1.7E+02 0.0036 27.0 9.7 51 174-224 42-99 (258)
159 COG0635 HemN Coproporphyrinoge 47.0 92 0.002 31.4 8.3 46 226-280 87-135 (416)
160 cd02071 MM_CoA_mut_B12_BD meth 46.9 1.5E+02 0.0033 23.9 10.4 69 54-123 26-104 (122)
161 PTZ00314 inosine-5'-monophosph 46.7 3.5E+02 0.0076 28.0 15.1 97 28-130 251-375 (495)
162 TIGR00629 uvde UV damage endon 46.5 1.5E+02 0.0032 28.7 9.1 106 126-237 47-166 (312)
163 TIGR01229 rocF_arginase argina 46.4 1.6E+02 0.0035 28.0 9.6 95 97-194 163-269 (300)
164 TIGR01305 GMP_reduct_1 guanosi 46.0 2.3E+02 0.005 27.7 10.3 91 33-128 123-241 (343)
165 PF04309 G3P_antiterm: Glycero 46.0 22 0.00048 31.1 3.2 73 33-129 97-170 (175)
166 cd04728 ThiG Thiazole synthase 45.9 1.4E+02 0.003 27.7 8.4 112 10-127 70-203 (248)
167 PRK00366 ispG 4-hydroxy-3-meth 45.7 1.4E+02 0.003 29.3 8.7 18 171-188 116-133 (360)
168 TIGR00612 ispG_gcpE 1-hydroxy- 45.5 3E+02 0.0065 26.8 11.0 53 171-224 107-165 (346)
169 PRK05848 nicotinate-nucleotide 45.0 42 0.00091 31.7 5.1 93 45-139 106-222 (273)
170 PF07485 DUF1529: Domain of Un 44.5 83 0.0018 25.9 6.2 32 163-196 61-92 (123)
171 PF01729 QRPTase_C: Quinolinat 44.5 72 0.0016 27.7 6.2 85 42-129 66-156 (169)
172 cd08564 GDPD_GsGDE_like Glycer 44.5 2.6E+02 0.0057 25.9 14.0 100 33-135 150-262 (265)
173 PRK05799 coproporphyrinogen II 44.4 85 0.0018 30.9 7.6 55 30-87 60-121 (374)
174 TIGR02151 IPP_isom_2 isopenten 44.2 1.5E+02 0.0033 28.8 9.1 81 40-124 165-279 (333)
175 PRK06582 coproporphyrinogen II 44.0 1.2E+02 0.0026 30.2 8.5 58 29-88 70-134 (390)
176 cd04729 NanE N-acetylmannosami 43.9 2.4E+02 0.0052 25.3 9.9 58 68-128 30-99 (219)
177 PRK14042 pyruvate carboxylase 43.8 3.7E+02 0.008 28.6 12.3 16 43-58 63-78 (596)
178 PRK10558 alpha-dehydro-beta-de 43.7 1.1E+02 0.0024 28.6 7.7 81 64-147 26-120 (256)
179 PRK07535 methyltetrahydrofolat 43.6 2.8E+02 0.006 25.9 10.6 56 67-125 57-120 (261)
180 COG0191 Fba Fructose/tagatose 43.5 89 0.0019 29.6 6.9 38 102-139 207-245 (286)
181 PRK12331 oxaloacetate decarbox 43.4 3.7E+02 0.0081 27.4 12.6 27 171-198 182-209 (448)
182 TIGR00640 acid_CoA_mut_C methy 43.2 1.9E+02 0.0041 23.9 10.2 85 38-123 13-107 (132)
183 TIGR03217 4OH_2_O_val_ald 4-hy 43.2 2.9E+02 0.0062 26.9 10.8 78 110-199 89-170 (333)
184 PRK10128 2-keto-3-deoxy-L-rham 43.2 1.2E+02 0.0026 28.5 7.9 75 64-141 25-113 (267)
185 TIGR00381 cdhD CO dehydrogenas 43.1 79 0.0017 31.3 6.8 77 28-108 186-277 (389)
186 PRK06015 keto-hydroxyglutarate 42.7 2.3E+02 0.005 25.4 9.3 106 37-151 13-125 (201)
187 PF01070 FMN_dh: FMN-dependent 42.7 1.5E+02 0.0033 29.1 8.9 77 43-125 214-306 (356)
188 PRK05628 coproporphyrinogen II 42.4 1.1E+02 0.0023 30.3 7.9 48 30-79 68-119 (375)
189 COG1954 GlpP Glycerol-3-phosph 42.3 2.1E+02 0.0046 25.0 8.4 69 33-125 101-170 (181)
190 PRK09389 (R)-citramalate synth 42.2 4.1E+02 0.0088 27.4 13.2 26 171-197 171-197 (488)
191 PF03060 NMO: Nitronate monoox 41.9 1.6E+02 0.0035 28.5 9.0 99 37-141 45-157 (330)
192 PRK07259 dihydroorotate dehydr 41.8 2.9E+02 0.0062 26.2 10.6 44 37-83 140-188 (301)
193 cd04732 HisA HisA. Phosphorib 41.8 2.6E+02 0.0057 25.1 10.0 59 68-128 149-219 (234)
194 TIGR03239 GarL 2-dehydro-3-deo 41.7 1.2E+02 0.0027 28.1 7.7 75 64-141 19-107 (249)
195 TIGR01182 eda Entner-Doudoroff 41.4 2.4E+02 0.0053 25.3 9.3 106 37-151 17-129 (204)
196 cd04738 DHOD_2_like Dihydrooro 41.3 2.2E+02 0.0047 27.5 9.7 87 37-124 180-305 (327)
197 TIGR02629 L_rham_iso_rhiz L-rh 41.0 3.5E+02 0.0077 27.1 11.0 84 174-258 100-199 (412)
198 PRK09240 thiH thiamine biosynt 40.0 3.4E+02 0.0073 26.8 11.0 14 84-97 161-174 (371)
199 PF01729 QRPTase_C: Quinolinat 39.9 66 0.0014 28.0 5.3 60 110-191 89-154 (169)
200 COG0418 PyrC Dihydroorotase [N 39.2 3.6E+02 0.0078 26.0 11.9 76 86-188 57-134 (344)
201 cd00019 AP2Ec AP endonuclease 38.7 2.4E+02 0.0052 26.2 9.4 94 174-282 87-182 (279)
202 cd04740 DHOD_1B_like Dihydroor 38.6 3.2E+02 0.0069 25.8 10.3 44 37-83 137-185 (296)
203 PRK07379 coproporphyrinogen II 38.2 3.7E+02 0.0081 26.8 11.1 41 171-211 150-190 (400)
204 cd02072 Glm_B12_BD B12 binding 37.9 2.3E+02 0.005 23.4 7.9 81 91-186 22-109 (128)
205 COG0159 TrpA Tryptophan syntha 37.8 1.1E+02 0.0024 28.7 6.6 93 41-147 3-99 (265)
206 PRK11425 PTS system N-acetylga 37.5 2.6E+02 0.0057 23.9 9.1 24 128-151 122-146 (157)
207 cd04726 KGPDC_HPS 3-Keto-L-gul 37.4 2.8E+02 0.0061 24.2 11.5 78 43-124 41-129 (202)
208 PRK09756 PTS system N-acetylga 37.3 2.7E+02 0.0058 23.9 9.7 74 77-152 57-150 (158)
209 COG0191 Fba Fructose/tagatose 37.2 2.1E+02 0.0047 27.1 8.4 105 111-228 7-133 (286)
210 PRK06106 nicotinate-nucleotide 36.6 69 0.0015 30.4 5.2 84 55-140 130-235 (281)
211 COG0157 NadC Nicotinate-nucleo 36.4 74 0.0016 30.0 5.2 36 80-119 192-227 (280)
212 PRK05437 isopentenyl pyrophosp 36.4 3.1E+02 0.0068 26.9 10.0 46 38-86 170-219 (352)
213 TIGR03572 WbuZ glycosyl amidat 36.3 3.3E+02 0.0071 24.6 11.2 59 68-128 156-227 (232)
214 TIGR03128 RuMP_HxlA 3-hexulose 35.6 3.1E+02 0.0067 24.1 9.2 80 67-151 39-134 (206)
215 cd06831 PLPDE_III_ODC_like_AZI 35.5 4.5E+02 0.0099 26.1 11.2 43 53-96 78-121 (394)
216 PRK09454 ugpQ cytoplasmic glyc 35.2 3.6E+02 0.0078 24.7 13.5 31 109-139 197-229 (249)
217 cd02810 DHOD_DHPD_FMN Dihydroo 35.1 3.8E+02 0.0083 25.1 10.5 23 101-123 245-267 (289)
218 cd00001 PTS_IIB_man PTS_IIB, P 35.0 2.8E+02 0.0061 23.5 10.1 81 70-152 44-145 (151)
219 PRK00048 dihydrodipicolinate r 34.2 99 0.0021 28.8 5.9 98 41-147 12-113 (257)
220 COG0134 TrpC Indole-3-glycerol 34.2 2.8E+02 0.0061 25.9 8.6 72 67-140 145-229 (254)
221 COG0821 gcpE 1-hydroxy-2-methy 33.9 4.6E+02 0.0099 25.6 10.0 52 172-224 110-167 (361)
222 PRK07114 keto-hydroxyglutarate 33.8 2.2E+02 0.0048 26.0 7.8 106 37-151 24-140 (222)
223 cd07937 DRE_TIM_PC_TC_5S Pyruv 33.8 4.1E+02 0.0088 25.0 12.2 26 171-197 177-203 (275)
224 TIGR00977 LeuA_rel 2-isopropyl 33.7 5.7E+02 0.012 26.7 14.4 36 68-103 26-69 (526)
225 COG0800 Eda 2-keto-3-deoxy-6-p 33.7 3.1E+02 0.0067 24.8 8.5 89 54-151 40-134 (211)
226 cd04731 HisF The cyclase subun 33.6 3.7E+02 0.008 24.5 15.1 91 100-192 72-169 (243)
227 PRK01130 N-acetylmannosamine-6 33.6 2.6E+02 0.0056 25.1 8.4 73 65-139 105-194 (221)
228 TIGR00854 pts-sorbose PTS syst 33.5 3E+02 0.0065 23.4 9.2 81 69-151 44-145 (151)
229 cd04722 TIM_phosphate_binding 33.5 3E+02 0.0064 23.3 9.6 84 42-127 101-198 (200)
230 PRK13586 1-(5-phosphoribosyl)- 33.4 3.8E+02 0.0082 24.5 9.7 50 101-150 75-129 (232)
231 PRK08898 coproporphyrinogen II 33.2 2.4E+02 0.0053 28.0 8.8 56 30-87 82-144 (394)
232 PF04551 GcpE: GcpE protein; 33.1 2.6E+02 0.0056 27.5 8.4 80 146-232 97-181 (359)
233 PRK06559 nicotinate-nucleotide 33.1 73 0.0016 30.4 4.7 63 85-150 182-247 (290)
234 PRK06552 keto-hydroxyglutarate 32.8 1.8E+02 0.0038 26.4 7.0 98 37-140 22-129 (213)
235 cd02922 FCB2_FMN Flavocytochro 32.8 4.6E+02 0.01 25.6 10.4 82 43-128 202-300 (344)
236 PF02126 PTE: Phosphotriestera 32.6 1.1E+02 0.0024 29.4 6.0 44 86-130 170-215 (308)
237 PRK06543 nicotinate-nucleotide 32.5 87 0.0019 29.7 5.1 36 80-119 197-232 (281)
238 PRK13209 L-xylulose 5-phosphat 32.3 3.9E+02 0.0085 24.8 9.8 8 226-233 208-215 (283)
239 PF03830 PTSIIB_sorb: PTS syst 32.2 2E+02 0.0043 24.5 6.9 80 70-151 45-145 (151)
240 PF01645 Glu_synthase: Conserv 31.9 3.7E+02 0.008 26.6 9.5 95 36-130 184-305 (368)
241 PRK08508 biotin synthase; Prov 31.8 4.4E+02 0.0095 24.8 12.2 25 113-137 142-172 (279)
242 PRK07896 nicotinate-nucleotide 31.8 3.8E+02 0.0082 25.6 9.3 37 79-119 202-238 (289)
243 cd02803 OYE_like_FMN_family Ol 31.8 2.9E+02 0.0062 26.5 8.9 81 42-125 194-308 (327)
244 PF00682 HMGL-like: HMGL-like 31.7 3.9E+02 0.0084 24.1 9.7 27 171-197 165-192 (237)
245 PRK08227 autoinducer 2 aldolas 31.4 4.5E+02 0.0097 24.7 10.8 96 113-225 47-142 (264)
246 TIGR02630 xylose_isom_A xylose 31.4 2.3E+02 0.0051 28.5 8.0 75 198-278 153-231 (434)
247 PRK06294 coproporphyrinogen II 31.3 2.1E+02 0.0046 28.2 7.9 87 30-119 67-177 (370)
248 TIGR00262 trpA tryptophan synt 31.2 4.4E+02 0.0094 24.5 10.2 12 172-183 184-195 (256)
249 PRK07428 nicotinate-nucleotide 31.1 4.1E+02 0.0089 25.3 9.5 37 79-119 199-235 (288)
250 PRK06978 nicotinate-nucleotide 31.1 87 0.0019 29.9 4.9 40 110-150 214-255 (294)
251 TIGR00007 phosphoribosylformim 30.7 4E+02 0.0087 23.9 10.2 58 68-127 148-217 (230)
252 TIGR00126 deoC deoxyribose-pho 30.7 4.1E+02 0.0088 24.0 9.2 91 40-130 102-206 (211)
253 PF03060 NMO: Nitronate monoox 30.5 2.5E+02 0.0055 27.1 8.2 48 58-107 116-165 (330)
254 TIGR00735 hisF imidazoleglycer 30.4 4.4E+02 0.0095 24.3 10.8 89 100-188 75-171 (254)
255 COG3836 HpcH 2,4-dihydroxyhept 30.4 4.4E+02 0.0096 24.4 9.1 82 64-148 24-119 (255)
256 PF01408 GFO_IDH_MocA: Oxidore 30.4 1.7E+02 0.0038 22.9 6.1 88 46-141 16-110 (120)
257 TIGR01037 pyrD_sub1_fam dihydr 30.3 4.7E+02 0.01 24.7 10.2 47 35-84 138-189 (300)
258 COG5012 Predicted cobalamin bi 30.2 3.5E+02 0.0076 24.7 8.3 28 211-239 171-198 (227)
259 PF01207 Dus: Dihydrouridine s 29.8 1.4E+02 0.0031 28.6 6.2 88 34-123 102-208 (309)
260 TIGR02311 HpaI 2,4-dihydroxyhe 29.7 2.2E+02 0.0049 26.3 7.4 85 63-148 18-114 (249)
261 PRK08385 nicotinate-nucleotide 29.7 1E+02 0.0023 29.2 5.1 35 81-119 187-221 (278)
262 PRK08072 nicotinate-nucleotide 29.6 4.9E+02 0.011 24.6 10.7 36 80-119 192-227 (277)
263 PRK05096 guanosine 5'-monophos 29.6 4.1E+02 0.0088 26.0 9.1 92 33-130 124-244 (346)
264 PRK07114 keto-hydroxyglutarate 29.6 4.1E+02 0.0088 24.2 8.8 71 53-124 12-94 (222)
265 COG0826 Collagenase and relate 29.4 5.5E+02 0.012 25.2 14.5 113 35-150 44-169 (347)
266 cd08582 GDPD_like_2 Glyceropho 29.2 4.3E+02 0.0092 23.8 10.5 31 109-139 189-221 (233)
267 cd04733 OYE_like_2_FMN Old yel 29.0 2.8E+02 0.006 26.9 8.2 109 15-127 176-321 (338)
268 PRK09016 quinolinate phosphori 28.9 1E+02 0.0022 29.5 4.9 63 85-150 194-258 (296)
269 PRK15062 hydrogenase isoenzyme 28.9 4E+02 0.0086 26.3 9.0 69 77-146 60-134 (364)
270 TIGR01227 hutG formimidoylglut 28.9 5.2E+02 0.011 24.7 10.2 106 89-197 166-285 (307)
271 cd02801 DUS_like_FMN Dihydrour 28.9 3.7E+02 0.0079 24.1 8.7 81 38-123 107-208 (231)
272 TIGR01140 L_thr_O3P_dcar L-thr 28.8 3.9E+02 0.0084 25.5 9.3 87 86-186 73-159 (330)
273 PRK07428 nicotinate-nucleotide 28.8 97 0.0021 29.5 4.8 83 55-139 132-236 (288)
274 PF01081 Aldolase: KDPG and KH 28.7 2.8E+02 0.006 24.8 7.4 106 37-151 17-129 (196)
275 COG0042 tRNA-dihydrouridine sy 28.4 3.4E+02 0.0074 26.3 8.6 87 33-120 114-219 (323)
276 PF01455 HupF_HypC: HupF/HypC 28.3 37 0.0008 24.7 1.5 15 365-379 34-48 (68)
277 cd04734 OYE_like_3_FMN Old yel 28.1 4.6E+02 0.01 25.5 9.6 120 2-127 156-314 (343)
278 PRK09016 quinolinate phosphori 28.0 4.2E+02 0.0091 25.4 8.9 37 79-119 211-247 (296)
279 PF08032 SpoU_sub_bind: RNA 2' 27.9 2E+02 0.0043 20.6 5.5 63 88-151 7-72 (76)
280 PRK06543 nicotinate-nucleotide 27.9 5.2E+02 0.011 24.5 9.5 85 42-130 179-267 (281)
281 PRK01722 formimidoylglutamase; 27.7 4.5E+02 0.0098 25.2 9.4 96 97-195 182-290 (320)
282 cd04735 OYE_like_4_FMN Old yel 27.5 3.3E+02 0.0071 26.6 8.5 106 15-122 171-307 (353)
283 PRK07107 inosine 5-monophospha 27.5 7.1E+02 0.015 25.8 16.7 48 127-181 292-339 (502)
284 PRK06843 inosine 5-monophospha 27.4 6.5E+02 0.014 25.3 14.4 92 33-129 167-286 (404)
285 cd04737 LOX_like_FMN L-Lactate 27.3 5.5E+02 0.012 25.2 9.9 68 61-128 225-305 (351)
286 PF12138 Spherulin4: Spherulat 27.2 5.1E+02 0.011 24.1 11.5 132 132-282 20-153 (253)
287 TIGR00074 hypC_hupF hydrogenas 27.2 44 0.00096 24.9 1.7 14 366-379 33-46 (76)
288 TIGR00538 hemN oxygen-independ 27.1 6.7E+02 0.015 25.4 11.7 105 98-211 102-226 (455)
289 COG1830 FbaB DhnA-type fructos 27.0 5.3E+02 0.012 24.2 13.0 97 113-225 48-145 (265)
290 TIGR01496 DHPS dihydropteroate 27.0 2.8E+02 0.006 25.9 7.5 54 68-124 64-121 (257)
291 PRK12311 rpsB 30S ribosomal pr 26.8 3.3E+02 0.0071 26.5 8.0 28 98-125 152-179 (326)
292 PF06180 CbiK: Cobalt chelatas 26.6 3.2E+02 0.007 25.6 7.8 56 39-98 17-73 (262)
293 cd00003 PNPsynthase Pyridoxine 26.5 5.1E+02 0.011 23.8 9.1 138 68-238 54-193 (234)
294 cd01425 RPS2 Ribosomal protein 26.1 4.5E+02 0.0097 23.2 8.4 109 13-125 13-154 (193)
295 PRK13585 1-(5-phosphoribosyl)- 26.1 4.9E+02 0.011 23.5 9.9 84 44-129 113-223 (241)
296 cd04743 NPD_PKS 2-Nitropropane 25.8 5.2E+02 0.011 25.0 9.2 48 89-140 75-123 (320)
297 cd01572 QPRTase Quinolinate ph 25.7 1.3E+02 0.0029 28.2 5.1 37 79-119 185-221 (268)
298 PF01884 PcrB: PcrB family; I 25.7 1.6E+02 0.0035 27.0 5.5 45 87-132 171-215 (230)
299 PRK05474 xylose isomerase; Pro 25.7 3.3E+02 0.0071 27.6 7.9 74 199-278 155-232 (437)
300 PF01081 Aldolase: KDPG and KH 25.7 1.2E+02 0.0026 27.1 4.6 104 10-125 17-125 (196)
301 PRK04165 acetyl-CoA decarbonyl 25.7 3.2E+02 0.0069 27.9 8.1 101 38-140 103-221 (450)
302 cd00405 PRAI Phosphoribosylant 25.6 3.6E+02 0.0079 23.8 7.8 42 109-150 7-59 (203)
303 cd08609 GDPD_GDE3 Glycerophosp 25.6 5.1E+02 0.011 24.9 9.3 49 84-136 233-281 (315)
304 PRK00278 trpC indole-3-glycero 25.5 4.1E+02 0.0089 24.7 8.4 72 67-140 149-233 (260)
305 PRK07094 biotin synthase; Prov 25.4 4.9E+02 0.011 24.8 9.3 40 38-79 101-140 (323)
306 PRK09389 (R)-citramalate synth 25.4 7.6E+02 0.017 25.4 13.8 40 171-212 142-181 (488)
307 PRK05926 hypothetical protein; 25.4 4.7E+02 0.01 25.9 9.1 21 38-58 129-149 (370)
308 PRK00915 2-isopropylmalate syn 25.3 7.8E+02 0.017 25.5 11.7 152 27-194 14-204 (513)
309 TIGR00273 iron-sulfur cluster- 25.2 7.3E+02 0.016 25.2 12.3 131 13-147 47-186 (432)
310 PRK06552 keto-hydroxyglutarate 25.1 5.1E+02 0.011 23.3 12.3 148 13-192 25-183 (213)
311 PF11213 DUF3006: Protein of u 24.7 59 0.0013 23.7 2.0 21 365-385 29-50 (71)
312 PRK05742 nicotinate-nucleotide 24.3 6.1E+02 0.013 24.0 10.0 37 79-119 192-228 (277)
313 PRK05299 rpsB 30S ribosomal pr 24.3 3E+02 0.0066 25.7 7.2 28 98-125 157-184 (258)
314 PRK06559 nicotinate-nucleotide 24.3 6.3E+02 0.014 24.1 9.3 37 79-119 200-236 (290)
315 PRK06852 aldolase; Validated 24.0 6.5E+02 0.014 24.2 14.1 104 111-225 62-169 (304)
316 PRK07807 inosine 5-monophospha 23.9 8.1E+02 0.017 25.2 11.3 92 33-130 241-361 (479)
317 COG0641 AslB Arylsulfatase reg 23.8 2.7E+02 0.0059 27.7 7.1 75 13-90 40-128 (378)
318 TIGR03581 EF_0839 conserved hy 23.6 72 0.0016 28.9 2.7 66 113-194 140-211 (236)
319 PLN02446 (5-phosphoribosyl)-5- 23.6 6.2E+02 0.013 23.8 10.3 50 100-150 84-142 (262)
320 cd00959 DeoC 2-deoxyribose-5-p 23.6 5.2E+02 0.011 22.9 9.5 85 40-124 101-199 (203)
321 TIGR01768 GGGP-family geranylg 23.6 1.5E+02 0.0033 27.1 4.9 75 55-130 118-210 (223)
322 COG3623 SgaU Putative L-xylulo 23.5 2.3E+02 0.0049 26.2 5.8 86 163-256 47-140 (287)
323 cd08608 GDPD_GDE2 Glycerophosp 23.5 4.2E+02 0.0092 26.0 8.3 50 83-136 210-259 (351)
324 PRK13802 bifunctional indole-3 23.4 7.6E+02 0.016 26.8 10.8 61 67-127 149-239 (695)
325 PRK06096 molybdenum transport 23.4 1.4E+02 0.0029 28.5 4.7 35 81-119 194-228 (284)
326 KOG2335 tRNA-dihydrouridine sy 23.4 7.2E+02 0.016 24.5 9.7 93 27-122 116-227 (358)
327 TIGR00715 precor6x_red precorr 23.3 2.2E+02 0.0047 26.6 6.0 73 57-129 131-206 (256)
328 cd08605 GDPD_GDE5_like_1_plant 23.2 6.2E+02 0.013 23.6 9.7 30 110-139 239-272 (282)
329 PRK08446 coproporphyrinogen II 22.8 5.1E+02 0.011 25.2 8.9 39 171-209 133-171 (350)
330 TIGR00216 ispH_lytB (E)-4-hydr 22.7 1.9E+02 0.0042 27.4 5.6 58 59-124 32-91 (280)
331 COG3010 NanE Putative N-acetyl 22.7 4.6E+02 0.0099 23.8 7.5 58 68-128 36-105 (229)
332 PRK01033 imidazole glycerol ph 22.7 6.2E+02 0.013 23.4 10.3 54 68-123 155-221 (258)
333 cd00983 recA RecA is a bacter 22.6 1.2E+02 0.0027 29.4 4.3 71 63-134 68-146 (325)
334 PF01113 DapB_N: Dihydrodipico 22.5 89 0.0019 25.4 3.0 100 42-147 12-120 (124)
335 PRK07896 nicotinate-nucleotide 22.4 1.6E+02 0.0035 28.1 5.0 115 55-191 136-273 (289)
336 PRK09284 thiamine biosynthesis 22.3 9.2E+02 0.02 25.3 11.2 27 209-239 355-381 (607)
337 PRK09456 ?-D-glucose-1-phospha 22.3 1.7E+02 0.0038 25.6 5.1 27 95-123 154-180 (199)
338 PF13679 Methyltransf_32: Meth 22.2 1.3E+02 0.0029 24.9 4.0 31 208-238 5-38 (141)
339 PRK02083 imidazole glycerol ph 22.1 6.2E+02 0.013 23.2 10.2 86 44-130 111-229 (253)
340 PF04413 Glycos_transf_N: 3-De 22.1 1.2E+02 0.0026 26.7 3.9 43 68-110 140-182 (186)
341 COG4952 Predicted sugar isomer 22.0 6E+02 0.013 24.3 8.4 54 201-255 150-205 (430)
342 smart00633 Glyco_10 Glycosyl h 21.9 2.1E+02 0.0045 26.5 5.6 74 172-261 136-213 (254)
343 cd02931 ER_like_FMN Enoate red 21.8 5.7E+02 0.012 25.3 9.1 17 68-84 255-272 (382)
344 cd00331 IGPS Indole-3-glycerol 21.8 4.7E+02 0.01 23.3 7.9 70 68-139 34-116 (217)
345 PRK13226 phosphoglycolate phos 21.8 3.2E+02 0.0069 24.6 6.8 73 67-139 100-187 (229)
346 PF13192 Thioredoxin_3: Thiore 21.8 1.6E+02 0.0034 21.5 3.9 47 73-119 23-76 (76)
347 PF00218 IGPS: Indole-3-glycer 21.7 3.6E+02 0.0077 25.2 7.1 38 67-106 147-186 (254)
348 TIGR00559 pdxJ pyridoxine 5'-p 21.7 6.4E+02 0.014 23.3 9.2 135 71-238 57-193 (237)
349 PRK14847 hypothetical protein; 21.7 7.6E+02 0.016 24.1 11.8 54 68-122 57-120 (333)
350 cd00331 IGPS Indole-3-glycerol 21.5 5.3E+02 0.011 22.9 8.2 71 68-140 111-194 (217)
351 TIGR03700 mena_SCO4494 putativ 21.4 6.9E+02 0.015 24.3 9.5 21 38-58 110-130 (351)
352 PRK09250 fructose-bisphosphate 21.4 7.8E+02 0.017 24.2 13.7 99 112-225 95-194 (348)
353 PRK05286 dihydroorotate dehydr 21.3 7.6E+02 0.017 24.0 10.1 49 37-85 189-246 (344)
354 PLN02535 glycolate oxidase 21.2 5.7E+02 0.012 25.3 8.7 68 60-128 226-307 (364)
355 PLN02716 nicotinate-nucleotide 21.1 2E+02 0.0044 27.6 5.4 21 110-130 212-238 (308)
356 PF00154 RecA: recA bacterial 21.1 68 0.0015 31.1 2.2 43 69-112 72-117 (322)
357 PF12195 End_beta_barrel: Beta 21.1 85 0.0018 23.3 2.2 19 368-386 27-45 (83)
358 cd08572 GDPD_GDE5_like Glycero 20.8 7.2E+02 0.016 23.5 12.9 29 110-138 250-282 (293)
359 PRK15408 autoinducer 2-binding 20.7 3.4E+02 0.0073 26.2 7.1 18 55-72 23-40 (336)
360 COG1410 MetH Methionine syntha 20.7 8.3E+02 0.018 26.7 10.0 129 10-149 81-231 (842)
361 PRK10425 DNase TatD; Provision 20.6 5.3E+02 0.011 24.0 8.1 55 60-119 127-191 (258)
362 PF12224 Amidoligase_2: Putati 20.6 3.2E+02 0.007 24.9 6.7 30 172-201 92-125 (252)
363 PRK04020 rps2P 30S ribosomal p 20.6 6.3E+02 0.014 22.7 9.2 93 33-125 42-141 (204)
364 TIGR03699 mena_SCO4550 menaqui 20.6 5.6E+02 0.012 24.7 8.6 18 34-51 69-86 (340)
365 TIGR03471 HpnJ hopanoid biosyn 20.4 3.5E+02 0.0076 27.6 7.5 83 35-119 256-360 (472)
366 PF03054 tRNA_Me_trans: tRNA m 20.4 3.4E+02 0.0074 26.7 7.0 52 180-232 19-70 (356)
367 TIGR02129 hisA_euk phosphoribo 20.4 3.5E+02 0.0075 25.3 6.6 80 68-151 41-136 (253)
368 COG4229 Predicted enolase-phos 20.3 1.8E+02 0.0039 25.8 4.4 29 92-122 170-198 (229)
369 PRK14828 undecaprenyl pyrophos 20.3 2.3E+02 0.005 26.5 5.5 41 171-211 124-164 (256)
370 PRK07094 biotin synthase; Prov 20.2 7.6E+02 0.016 23.5 11.6 109 89-206 79-198 (323)
371 COG4294 Uve UV damage repair e 20.2 4.2E+02 0.0092 25.4 7.0 65 172-239 116-186 (347)
372 TIGR02247 HAD-1A3-hyp Epoxide 20.1 2.2E+02 0.0048 25.0 5.3 11 69-79 101-111 (211)
373 PRK13523 NADPH dehydrogenase N 20.0 2.7E+02 0.0059 27.1 6.2 45 142-198 207-251 (337)
No 1
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-77 Score=561.81 Aligned_cols=375 Identities=44% Similarity=0.761 Sum_probs=337.3
Q ss_pred HHHHHHHH--Hhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHH
Q 015304 15 LTEFVRST--ILKR--QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIE 90 (409)
Q Consensus 15 ~~~~~~~~--~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~ 90 (409)
...+|++. +..+ ..... ||||+|+++|.+++++|++.+|+++++||||||++|.|++.|++.|+||+|+|..|++
T Consensus 36 ~r~~i~e~~~~~~~~~~~e~~-aFfv~Dl~~I~Rkl~~w~~~LprV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~ 114 (448)
T KOG0622|consen 36 LRNLIEEGTLVAERMETGEKQ-AFFVADLGAIERKLEAWKKALPRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELD 114 (448)
T ss_pred HHHHHHHhhhhhhhccccccC-ceEEecHHHHHHHHHHHHHhcccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHH
Confidence 34444444 4433 33456 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCC
Q 015304 91 AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHH 170 (409)
Q Consensus 91 ~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~ 170 (409)
+++.+|++|+||||++|+|+.+.|++|.++||...++||.+||.++.+.+|+++++|||++. ++.+.+..+.|||++
T Consensus 115 lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatd-ds~a~~~l~~KFG~~-- 191 (448)
T KOG0622|consen 115 LVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATD-DSTATCRLNLKFGCS-- 191 (448)
T ss_pred HHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccC-CCcccccccCccCCC--
Confidence 99999999999999999999999999999999988999999999999999999999999984 445566677899999
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAA 250 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~ 250 (409)
.+++..+++.+++++++++|+|||+||.+.+++.|.+++..++.+++.+.++|+ .+.+||+||||++.+.....|++++
T Consensus 192 ~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf-~m~~LdiGGGf~g~~~~~~~fe~i~ 270 (448)
T KOG0622|consen 192 LDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGF-EMDILDIGGGFPGDEGHAVVFEEIA 270 (448)
T ss_pred HHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcCc-eEEEeecCCCCCCccchhhhhhhHH
Confidence 899999999999999999999999999999999999999999999999999999 8999999999999765446799999
Q ss_pred HHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCC------------eeEEEEeCCcCCCccccc
Q 015304 251 SIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGE------------MRNYWINDGKYGSFDWVN 318 (409)
Q Consensus 251 ~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~------------~~~~~i~~g~~~~~~~~~ 318 (409)
+.|+.++.+||+.. ++++++|||||+|++|++|++.|+++|+.+. +..|+++||+|++|+|.+
T Consensus 271 ~~In~ald~~Fp~~-----~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL 345 (448)
T KOG0622|consen 271 DVINTALDLYFPSG-----GVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCIL 345 (448)
T ss_pred HHHHHHHHHhCCCC-----CceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeechhh
Confidence 99999999999752 6889999999999999999999999998432 347999999999999999
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCc
Q 015304 319 YDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAA 398 (409)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~ 398 (409)
|+++++.+.+..+.. .+.+.++.+|+||||++.|++.++..||.+.+||||+|.+|||||++++|.||++++|
T Consensus 346 ~D~~~~i~~~~~~~~------e~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p- 418 (448)
T KOG0622|consen 346 FDHQHPIPLVVKDPS------EEEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRP- 418 (448)
T ss_pred hcccCCcccccCCCc------cccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCccccccccccCCCCCC-
Confidence 999998865444322 1224688999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC
Q 015304 399 IPTYVVRS 406 (409)
Q Consensus 399 ~v~~~~~~ 406 (409)
..+|+.+.
T Consensus 419 ~~~y~~s~ 426 (448)
T KOG0622|consen 419 KIYYVMSD 426 (448)
T ss_pred ceEEEecc
Confidence 56777653
No 2
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=3.6e-75 Score=575.24 Aligned_cols=364 Identities=38% Similarity=0.660 Sum_probs=318.8
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++.++ |+||||++.|++|+++|+++||+++++||+|||+++.|+++|.+.|+||||+|.+|+++|+++|+++++|+|+|
T Consensus 9 ~~~~~-p~yv~d~~~i~~~~~~l~~~lp~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~gEl~~al~~G~~~~~Iif~g 87 (394)
T cd06831 9 LTGKN-AFFVGDLGKIVKKHSQWQTVMAQIKPFYTVRCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIYTN 87 (394)
T ss_pred ccCCC-CeEEEEHHHHHHHHHHHHHHCCCCeEEeeeccCCCHHHHHHHHHcCCCeEeCCHHHHHHHHhcCCCcCCEEEeC
Confidence 45589 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCC
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGL 186 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l 186 (409)
|+|+.++|+.|+++|+.++++||++||++|.+.++++++.|||++.... ......+|||++ .+++.++++.+++.++
T Consensus 88 p~K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~~~~~~~v~lRi~~~~~~-~~~~~~~KFGi~--~~~~~~~l~~~~~~~l 164 (394)
T cd06831 88 PCKQASQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKLLLHIATEDNI-GGEEMNMKFGTT--LKNCRHLLECAKELDV 164 (394)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHhCCCCcEEEEEeccCCC-CCCccCCCCCCC--HHHHHHHHHHHHHCCC
Confidence 9999999999999999778999999999999999999999999985322 233345899999 9999999999988899
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 015304 187 SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELL 266 (409)
Q Consensus 187 ~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 266 (409)
++.|||||+||++.+.+.|.++++.++.+++.+++.|+ ++++|||||||+.. .++++++++.|++.++++++..
T Consensus 165 ~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~-~l~~ldiGGGf~~~---~~~~~~~~~~i~~~l~~~~~~~-- 238 (394)
T cd06831 165 QIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGF-KMNMLDIGGGFTGS---EIQLEEVNHVIRPLLDVYFPEG-- 238 (394)
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEeCCCcCCC---CCCHHHHHHHHHHHHHHhcCcC--
Confidence 99999999999999999999999888888898888998 99999999999862 4689999999999999987532
Q ss_pred CCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCC---------------eeEEEEeCCcCCCcccccccccccccccccc
Q 015304 267 PGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGE---------------MRNYWINDGKYGSFDWVNYDEAIAKCTPLTL 331 (409)
Q Consensus 267 ~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~---------------~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~ 331 (409)
.+++|++|||||++++||+|+|+|+++|...+ ..+|++++|+|+++.+..++...+.+.+...
T Consensus 239 --~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~d~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~ 316 (394)
T cd06831 239 --SGIQIIAEPGSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSEKLNTTPEVHKK 316 (394)
T ss_pred --CCCEEEEeCChhhhhcceEEEEEEEEEEeeccccccccccccCCCCceeEEEEcCceechhhhhhcccCcccceeecc
Confidence 25789999999999999999999999997421 1467788889988888776544332221111
Q ss_pred ccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEEecCCC
Q 015304 332 ASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNR 408 (409)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~~~~~~~ 408 (409)
.. .+....+++|+||+|++.|++.+++.||++++||||+|.++|||+.+|+++||++++|++++|.+.+++
T Consensus 317 ~~------~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~i~~~GAY~~s~ss~Fn~~~~p~~v~~~~~~~~ 387 (394)
T cd06831 317 YK------EDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMMSFSDW 387 (394)
T ss_pred CC------CCCCceeEEEEeCCCCHHHeecccCcCCCCCCCCEEEECCCCCcccccccCCCCCCCCcEEEEECcchh
Confidence 00 011346799999999999999999999999999999999999999999999999999999998887654
No 3
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-73 Score=558.43 Aligned_cols=357 Identities=32% Similarity=0.509 Sum_probs=316.1
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCCC--cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLPM--IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~~--~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
++++| |+||||++.|++|+++++++|++ ++++||+|||+++.|+++|.+.|.|+||+|.+|+++++++|++|++|+|
T Consensus 23 ~~~gT-P~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~gEl~~al~aG~~~~~I~f 101 (394)
T COG0019 23 EEFGT-PVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLGELELALAAGFPPERIVF 101 (394)
T ss_pred hccCC-CEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcCCCCHHHHHHHHHhCCCceecCHHHHHHHHHcCCChhhEEE
Confidence 68999 99999999999999999999985 7999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCC--CeEEEEEecCCC--CCCCCCCC---CCcCCCCCcccHHHH
Q 015304 105 ANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPK--CDLLIRIKPPDD--SGAKHPLD---SKYGVDHHPQEIVPL 177 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~--~~v~lRv~~~~~--~~~~~~~~---srfGi~~~~~~~~~~ 177 (409)
+||+|++++|++|++.|+.++++||++||++|.+.++. ++|.|||||+.+ +|..+.++ +|||++ .+++.++
T Consensus 102 ~g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~--~~~a~~~ 179 (394)
T COG0019 102 SGPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGLVARVSLRINPGVSAGTHEYIATGGKSSKFGIS--PEEALDV 179 (394)
T ss_pred CCCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHHhccccCceEEEEECCCCCCccCccccCCccccccCCC--HHHHHHH
Confidence 99999999999999999987999999999999999987 799999999653 45556664 899999 8888888
Q ss_pred HHHHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHH
Q 015304 178 LEAAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETA-ARLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASI 252 (409)
Q Consensus 178 ~~~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~ 252 (409)
++.+.+ +++++.|||||+|||+.|.+.|.++++++.+++..+ ++.|+ .+++||+||||+++|.. .+++.++++.
T Consensus 180 ~~~~~~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~-~l~~inlGGG~gi~Y~~~~~~~~~~~~~~~ 258 (394)
T COG0019 180 LERAAKLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGI-QLEWLNLGGGLGITYEDEYDPPDLAAYAKA 258 (394)
T ss_pred HHHHHhcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCC-CceEEEecCCcCcCCCCCCCCcCHHHHHHH
Confidence 887754 699999999999999999999999999998888866 57798 99999999999999875 2467778888
Q ss_pred HHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccc
Q 015304 253 IKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLA 332 (409)
Q Consensus 253 i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~ 332 (409)
+.+.+.++. +.++|++||||+++++||+|+|+|.++|+.++.+++++|.|++..+++.+|+.+++.. +...
T Consensus 259 l~~~~~~~~-------~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~~~~v~vD~gm~~~~rpaly~a~~~~~--~~~~ 329 (394)
T COG0019 259 LKEAFGEYA-------EDVELILEPGRAIVANAGVLVTEVLDVKENGERNFVIVDGGMNDLMRPALYGAYHHIR--LNRT 329 (394)
T ss_pred HHHHHhhcc-------CCCeEEEccchhhhhcceeEEEEEEEEEEecCceEEEEechhccCcCHHHcCCccccc--cccc
Confidence 877777651 3577999999999999999999999999876556777888899999999999987652 2111
Q ss_pred cccccCCCCCCceeEEEEccccCCCCccccCCCCCC-CCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 333 SSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPE-LEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~-l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
. .......++|+||+|+++|+|.+++.||+ +++||+|+|.++||||+||+|+||++++|++|++
T Consensus 330 ~------~~~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~v 394 (394)
T COG0019 330 D------EDAEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVLV 394 (394)
T ss_pred c------CCCCeEEEEEECCCcCCCCeeeeeeeCCCCCCCCCEEEEcccchhhhhhhccccCCCCCceeeC
Confidence 1 11245789999999999999999999996 5699999999999999999999999999998864
No 4
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=5.1e-70 Score=535.97 Aligned_cols=349 Identities=23% Similarity=0.350 Sum_probs=297.2
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhC--CCCCCcEEEe
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLAL--GVSPDRIIYA 105 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~--G~~~~~Ii~~ 105 (409)
+..| |+||||++.|++|+++|++.++..+++||+|||+++.|++.+.++|+||||+|.+|+++++++ |+++++|+|+
T Consensus 9 ~~~t-P~~v~d~~~l~~~~~~l~~~~~~~~~~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Iif~ 87 (368)
T cd06840 9 PDVG-PCYVYDLETVRARARQVSALKAVDSLFYAIKANPHPDVLRTLEEAGLGFECVSIGELDLVLKLFPDLDPRRVLFT 87 (368)
T ss_pred CCCC-CEEEecHHHHHHHHHHHHhCCCCCeEEEEeccCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcccCCCcceEEEc
Confidence 6689 999999999999999998644556899999999999999999999999999999999999998 9999999999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCC--CCCCCC---CCCcCCCCCcccHHHHHHH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDS--GAKHPL---DSKYGVDHHPQEIVPLLEA 180 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~--~~~~~~---~srfGi~~~~~~~~~~~~~ 180 (409)
||.|++++|++|+++|+. +++||++||++|.++++..+++||||++... +..+.+ .+|||++ .+++.++++.
T Consensus 88 gp~K~~~~l~~a~~~gv~-i~~Ds~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~--~~~~~~~l~~ 164 (368)
T cd06840 88 PNFAARSEYEQALELGVN-VTVDNLHPLREWPELFRGREVILRIDPGQGEGHHKHVRTGGPESKFGLD--VDELDEARDL 164 (368)
T ss_pred CCCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhcccCCEEEEECCCCCCCCCCceecCCCCCCCCCC--HHHHHHHHHH
Confidence 999999999999999995 7999999999999999889999999986532 223333 3899999 9999999998
Q ss_pred HHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHHHHHHH
Q 015304 181 AEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASIIKEAL 257 (409)
Q Consensus 181 ~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~i~~~l 257 (409)
+++.++++.|+|||+||+..+.+.|.++++.+.+ ..+. . +.+++|||||||+++|.. .++++.+++.+.+..
T Consensus 165 ~~~~~l~l~GlhfH~GS~~~~~~~~~~~~~~~~~---l~~~-~-~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~i~~~~ 239 (368)
T cd06840 165 AKKAGIIVIGLHAHSGSGVEDTDHWARHGDYLAS---LARH-F-PAVRILNVGGGLGIPEAPGGRPIDLDALDAALAAAK 239 (368)
T ss_pred HHhCCCcEEEEEEECCCCCCCHHHHHHHHHHHHH---HHHh-c-CCCCEEEecCcccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 8888999999999999999999998776654333 3333 2 378999999999999853 357888887777544
Q ss_pred HhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccccccccccc
Q 015304 258 HAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTT 337 (409)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (409)
..+ |+++|++|||||++++||+++|+|+++|+.++.+++++|+|++..+.+.+|+.+++.. .+...
T Consensus 240 ~~~--------~~~~l~~EPGR~lva~ag~lvt~V~~vK~~~~~~~~~~d~G~~~l~~p~~~~~~~~~~-~~~~~----- 305 (368)
T cd06840 240 AAH--------PQYQLWMEPGRFIVAESGVLLARVTQIKHKDGVRFVGLETGMNSLIRPALYGAYHEIV-NLSRL----- 305 (368)
T ss_pred hhC--------CCcEEEEecCceeeecceEEEEEEEEEEecCCcEEEEEeCchhcccchhhhcccceeE-ecCCC-----
Confidence 321 3578999999999999999999999999876667888999987777777777665432 22221
Q ss_pred CCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEE
Q 015304 338 SKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 338 ~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
+.....+++|+||+|++.|++..+..+|++++||+|+|.+||||+++++++||++|+|++|+
T Consensus 306 --~~~~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~~~~v~ 367 (368)
T cd06840 306 --DEPPAGNADVVGPICESGDVLGRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVV 367 (368)
T ss_pred --CcCCcceEEEEeCCcCCCCEEeecccCCCCCCCCEEEEecCCcchHhhhhhccCCCCCCEEe
Confidence 11134679999999999999999999999999999999999999999999999999998875
No 5
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=5.7e-70 Score=542.39 Aligned_cols=359 Identities=23% Similarity=0.294 Sum_probs=304.4
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC----------CcceEEecCcCCcHHHHHHHHHcC----CcEEEcCHHHHHHH
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP----------MIHPHYAVKCNPEPALLEALAALG----SNFDCASRSEIEAV 92 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKan~~~~vl~~l~~~G----~g~~vaS~~E~~~a 92 (409)
++++| |+||||++.|++|+++++++|+ +++++||+|||+++.|+++|.++| +||||+|.+|++.+
T Consensus 1 ~~ygt-Plyvyd~~~i~~~~~~l~~af~~~~~~~~~~~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~a 79 (409)
T cd06830 1 RGYGL-PLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAA 79 (409)
T ss_pred CCCCC-CEEEEcHHHHHHHHHHHHHHHHHHHHhcCcCCceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHH
Confidence 36899 9999999999999999999997 358999999999999999999999 99999999999999
Q ss_pred HhCCCCCCcEEEeCCCCCHHHHHHHHHc---CCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC-CCCC---C
Q 015304 93 LALGVSPDRIIYANPCKPVSHIKYAANV---GVN-LTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDS-GAKH---P 160 (409)
Q Consensus 93 ~~~G~~~~~Ii~~gp~k~~~~i~~a~~~---gv~-~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~-~~~~---~ 160 (409)
+++|+++++|++.++.|+.++|+.|++. |+. ++++||++||++|.+++ ++.+++||||++... +..+ .
T Consensus 80 l~~G~~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~ 159 (409)
T cd06830 80 LALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGKWQESGG 159 (409)
T ss_pred HhcCCCCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEEEccCCCCCcceeccCC
Confidence 9999988999999889999999999876 443 58999999999999874 356899999986432 2222 2
Q ss_pred CCCCcCCCCCcccHHHHHHHHHHc--CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCc
Q 015304 161 LDSKYGVDHHPQEIVPLLEAAEAS--GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSF 238 (409)
Q Consensus 161 ~~srfGi~~~~~~~~~~~~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~ 238 (409)
..+|||++ .+++.++++.+++. ++++.|||||+||++.+.+.|.++++++.++++.+++.|+ ++++|||||||++
T Consensus 160 ~~sKFGi~--~~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~iDiGGGf~v 236 (409)
T cd06830 160 DRSKFGLT--ASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGA-NLRYLDIGGGLGV 236 (409)
T ss_pred CCCCCCCC--HHHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CCcEEEcCCCccc
Confidence 34899999 99999999998874 6899999999999999999999999999998888887787 9999999999999
Q ss_pred CCCCC---------CCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCC
Q 015304 239 TNSNT---------KSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDG 309 (409)
Q Consensus 239 ~~~~~---------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g 309 (409)
+|... ++++++++.|.+.+++++.+.+ .+.++|++|||||++++||+++|+|+++|+.+ ++|++++|
T Consensus 237 ~y~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~~~--~~~~~l~~EpGR~lva~ag~lvt~V~~~K~~~--~~~~~~dg 312 (409)
T cd06830 237 DYDGSRSSSDSSFNYSLEEYANDIVKTVKEICDEAG--VPHPTIVTESGRAIVAHHSVLIFEVLGVKRLA--DWYFCNFS 312 (409)
T ss_pred CCCCCcCcccCCCCCCHHHHHHHHHHHHHHHHHHcC--CCCCEEEEecCHHhhhhceEEEEEeEEEEecC--CEEEEecc
Confidence 98643 4899999999999999874322 13567999999999999999999999999744 47889998
Q ss_pred cCCCcc-ccccccccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCC---------CC--CCCCCCEEEE
Q 015304 310 KYGSFD-WVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK---------LP--ELEVTDWLVF 377 (409)
Q Consensus 310 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~---------lp--~l~~GD~l~~ 377 (409)
.++++. +.+|+..++. .++.... +.+..+++|+||+|++.|++.+++. || ++++||+|+|
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~v~Gp~C~s~D~~~~~~~l~~~~~~~~lp~~~~~~GD~l~~ 384 (409)
T cd06830 313 LFQSLPDSWAIDQLFPI-MPLHRLN-------EKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGF 384 (409)
T ss_pred cccCCcchHHhCCCceE-EECCCCC-------CCCceeEEEeccCcCCCCEEeeecccccccccccCCCCCCCCCCEEEE
Confidence 766554 4456555543 2333211 1134679999999999999999877 44 3479999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEE
Q 015304 378 SEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 378 ~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
.++|||+.+|+++||++++|++|+
T Consensus 385 ~~~GAY~~s~ss~fn~~~~p~~v~ 408 (409)
T cd06830 385 FLVGAYQEILGDLHNLFGDTNAVH 408 (409)
T ss_pred EeccHhhHHHHhcccCCCCCCEEe
Confidence 999999999999999999999876
No 6
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=5.7e-69 Score=530.84 Aligned_cols=356 Identities=23% Similarity=0.346 Sum_probs=295.3
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCH
Q 015304 33 PFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPV 111 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 111 (409)
|+||||++.|++|+++|+++||. ++++||+|||+++.|+++|.+.|+|+||+|.+|+++++++|+++++|+|+||+|+.
T Consensus 4 ~~~v~d~~~l~~~~~~l~~a~~~~~~~~yAvKaN~~~~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~K~~ 83 (379)
T cd06836 4 AVGLYDLDGFRALVARLTAAFPAPVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSPAKTR 83 (379)
T ss_pred EEEEEcHHHHHHHHHHHHHhcCCCcEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCChhhEEEeCCCCCH
Confidence 89999999999999999999995 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCC--CCCCC---CCCCcCCCCCcc--cHHHHHH
Q 015304 112 SHIKYAANVGVNLTTFDSVEELHKIRKWH-----PKCDLLIRIKPPDDS--GAKHP---LDSKYGVDHHPQ--EIVPLLE 179 (409)
Q Consensus 112 ~~i~~a~~~gv~~~~vds~~el~~i~~~~-----~~~~v~lRv~~~~~~--~~~~~---~~srfGi~~~~~--~~~~~~~ 179 (409)
++|+.|+++|+. +++||++||++|.+++ ++.+|+|||||+... +.... ..+|||++ .+ ++.++++
T Consensus 84 ~~L~~ai~~gv~-i~iDS~~El~~i~~~a~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~--~~~~~~~~~~~ 160 (379)
T cd06836 84 AELREALELGVA-INIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVA--LEDGARDEIID 160 (379)
T ss_pred HHHHHHHHCCCE-EEECCHHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCccccccCCCCCCCCcC--cchhHHHHHHH
Confidence 999999999994 8999999999998864 347899999985432 22222 24899999 76 5656665
Q ss_pred HHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCCcEEeecCCCCcCCCCC---CCHHHHHHHHHH
Q 015304 180 AAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAAR-LGNNKMRVLDIGGGFSFTNSNT---KSFQEAASIIKE 255 (409)
Q Consensus 180 ~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~-~g~~~~~~ldiGGG~~~~~~~~---~~~~~~~~~i~~ 255 (409)
.+.. ...+.|||||+||+..+.+.|.++++++..+++.+++ .|..++++||+||||+++|... ++++++++.|++
T Consensus 161 ~~~~-~~~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~IDiGGGf~v~y~~~~~~~~~~~~~~~i~~ 239 (379)
T cd06836 161 AFAR-RPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAALKA 239 (379)
T ss_pred HHhc-CCCeEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCccccCCCCCCCCCCHHHHHHHHHH
Confidence 4432 3467899999999999999999888887777776654 4522799999999999998643 589999999999
Q ss_pred HHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccc-cccccccc
Q 015304 256 ALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKC-TPLTLASS 334 (409)
Q Consensus 256 ~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~-~~l~~~~~ 334 (409)
.+.++++. +++|++|||||++++||+|+|+|+++|...+..++++|.|++....+..|.+.++.. .++.....
T Consensus 240 ~l~~~~~~------~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (379)
T cd06836 240 AVPELFDG------RYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGE 313 (379)
T ss_pred HHHHHhcc------CcEEEEecChheeccceEEEEEEEEEEecCCeEEEEEcCCccccchhhhccccCceEEeccccccc
Confidence 99988742 478999999999999999999999999865556667888887666665554433221 11111111
Q ss_pred cccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 335 LTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 335 ~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
.......++.|+||+|++.|++.+++.+|++++||+|+|.+||||+++|+++||++++|++++|
T Consensus 314 ----~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~~~p~~~~~ 377 (379)
T cd06836 314 ----PKTGPEVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGV 377 (379)
T ss_pred ----ccCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHhhhCCCCCeEEEe
Confidence 0011346899999999999999999999999999999999999999999999999999977665
No 7
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=6.6e-68 Score=522.04 Aligned_cols=356 Identities=49% Similarity=0.855 Sum_probs=314.5
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCK 109 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k 109 (409)
.| |+|+||+++|++|+++|++.+|+.+++||+|||+++.|++.+.+.|++|+|+|.+|++.++++|+++++|+|+||.|
T Consensus 1 ~t-P~~vid~~~l~~N~~~~~~~~~~~~~~~avKAN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~i~~~~~~k 79 (362)
T cd00622 1 ET-PFLVVDLGDVVRKYRRWKKALPRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIELVLGLGVSPERIIFANPCK 79 (362)
T ss_pred CC-CEEEEeHHHHHHHHHHHHHHCCCCeEEEEeccCCCHHHHHHHHHcCCCeEecCHHHHHHHHHcCCCcceEEEcCCCC
Confidence 47 99999999999999999999998899999999999999999999999999999999999999999989999999999
Q ss_pred CHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEE
Q 015304 110 PVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVV 189 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~ 189 (409)
++++++.|+++|+..+++||++|++++.+.+++.++.+||++..+.+ ....++|||++ ++++.++++.+++.++++.
T Consensus 80 ~~~~l~~a~~~gi~~~~~ds~~el~~l~~~~~~~~v~vri~~~~~~~-~~~~~sRfGi~--~~~~~~~~~~~~~~~~~~~ 156 (362)
T cd00622 80 SISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIATDDSGA-LCPLSRKFGAD--PEEARELLRRAKELGLNVV 156 (362)
T ss_pred CHHHHHHHHHcCCCEEEECCHHHHHHHHHHCCCCEEEEEEeeCCCCC-CCcccCCCCCC--HHHHHHHHHHHHHcCCEEE
Confidence 99999999999997678899999999999988889999999843322 22345899999 8899999988877789999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC-CCCHHHHHHHHHHHHHhhCCCCCCCC
Q 015304 190 GVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN-TKSFQEAASIIKEALHAYFPNELLPG 268 (409)
Q Consensus 190 Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~ 268 (409)
|+|+|+||+..+.+.|.++++++.++++.+++.+. .+.+||+||||+++|.. .++++++++.|++.+.+|+..
T Consensus 157 Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~----- 230 (362)
T cd00622 157 GVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGF-KLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFPD----- 230 (362)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CcCEEEeCCCcCcccCCCCCCHHHHHHHHHHHHHHhCCc-----
Confidence 99999999988889999999999999888888787 89999999999999854 478999999999999999753
Q ss_pred CCcEEEEcCCceeeeccEEEEEEEEEEEEeCC---eeEEEEeCCcCCCccccccccccccccccccccccccCCCCCCce
Q 015304 269 SSLRVISEPGRFFTYSAFTLYTQIIGKRVHGE---MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTY 345 (409)
Q Consensus 269 ~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~---~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (409)
+..++++||||+++++||+|+|+|+++|+..+ .+++++|+|++..+.+.+|..++++..++.... + +....
T Consensus 231 ~~~~l~~EpGr~lv~~ag~l~t~V~~vk~~~~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~ 304 (362)
T cd00622 231 EGVRIIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPPRVLKDGG-----R-DGELY 304 (362)
T ss_pred CCCeEEEeCCchhccceEEEEEEEEEEEecCCCCceEEEEEcCCeecchhhhhhccCCceeEEecCCC-----C-CCCee
Confidence 35679999999999999999999999998654 468899999988888887777765433443211 0 12457
Q ss_pred eEEEEccccCCCCccccCCCCCC-CCCCCEEEEcCCCccccccCCCCCCCCCCcEEE
Q 015304 346 NSKVFGPTCDAADEVFSGHKLPE-LEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 346 ~~~i~G~~C~~~D~l~~~~~lp~-l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
+++|+||+|+++|++.+++.||+ +++||+|+|.++|||+++|+++||++++|++|+
T Consensus 305 ~~~v~G~~C~~~D~l~~~~~lp~~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~ 361 (362)
T cd00622 305 PSSLWGPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIVY 361 (362)
T ss_pred eEEEEcCCCCcccEecccCcCcccCCCCCEEEEcCCCCccccccCCCCCCCCCeeEe
Confidence 89999999999999999999997 999999999999999999999999999997765
No 8
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=100.00 E-value=2.7e-68 Score=534.13 Aligned_cols=361 Identities=27% Similarity=0.357 Sum_probs=314.3
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCCC--cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLPM--IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~~--~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
++++| |+||||++.|++|++.|++.+++ ++++||+|||+++.|++.+.+.|+||||+|++|++.++++|+++++|+|
T Consensus 21 ~~~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~I~~ 99 (417)
T TIGR01048 21 EEFGT-PLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNLALLRLLAELGSGFDVVSGGELYRALAAGFPPEKIVF 99 (417)
T ss_pred HhhCC-CEEEEeHHHHHHHHHHHHHhhCCCCceEEEEehhCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCcceEEE
Confidence 36789 99999999999999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCC--CCCCCCC---CCcCCCCCcccHH
Q 015304 105 ANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHP----KCDLLIRIKPPDDS--GAKHPLD---SKYGVDHHPQEIV 175 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~~--~~~~~~~---srfGi~~~~~~~~ 175 (409)
+||.|++++++.|+++|+..+++||++|+++|.+.++ +.+|+||||++... +.+++++ +|||++ ++++.
T Consensus 100 ~gp~k~~~~l~~a~~~gi~~i~iDs~~el~~l~~~a~~~~~~~~v~lRIn~~~~~~~~~~~~~g~~~srfGi~--~~~~~ 177 (417)
T TIGR01048 100 NGNGKSRAELERALELGIRCINVDSESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYISTGLEDSKFGID--VEEAL 177 (417)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCCeecCCCCCCCCCC--HHHHH
Confidence 9999999999999999997689999999999988764 35899999986532 3344443 899999 88899
Q ss_pred HHHHHHHHc-CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCC---CCHHHHHH
Q 015304 176 PLLEAAEAS-GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNT---KSFQEAAS 251 (409)
Q Consensus 176 ~~~~~~~~~-~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~---~~~~~~~~ 251 (409)
++++.++.. ++++.|||+|+||+..|.+.|.++++.+.++++.+++.+. .+++||+||||+++|... ++++++++
T Consensus 178 ~~~~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~-~l~~idiGGG~~~~y~~~~~~~~~~~~~~ 256 (417)
T TIGR01048 178 EAYLYALQLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAEGI-DLEFLDLGGGLGIPYTPEEEPPDPEEYAQ 256 (417)
T ss_pred HHHHHHHhCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHhcCC-CccEEEeCCccccccCCCCCCCCHHHHHH
Confidence 998888764 7999999999999988999999999999888888887887 899999999999998542 68999999
Q ss_pred HHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccccc
Q 015304 252 IIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTL 331 (409)
Q Consensus 252 ~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~ 331 (409)
.|++.+++++... .+++|++|||||++++||+++++|+++|++++..++++|+|+++.+.+.+|+..++.. .+..
T Consensus 257 ~i~~~~~~~~~~~----~~~~l~~EPGR~lva~~g~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~-~~~~ 331 (417)
T TIGR01048 257 AILAALEGYADLG----LDPKLILEPGRSIVANAGVLLTRVGFVKEVGSRNFVIVDAGMNDLIRPALYGAYHHII-VANR 331 (417)
T ss_pred HHHHHHHHHHhcC----CCcEEEEccCceeeccceEEEEEEEEEEecCCCEEEEEeCCcccchhhhhccccceEE-EccC
Confidence 9999999986411 2578999999999999999999999999876666778898887776777787765542 2221
Q ss_pred ccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 015304 332 ASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYV 403 (409)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~~ 403 (409)
. +..+..++.|+||+|++.|+|..++.+|++++||+|+|.++|||+++++++||++|+|+++++-
T Consensus 332 ~-------~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~~ 396 (417)
T TIGR01048 332 T-------NDAPTEVADVVGPLCESGDVLARDRELPEVEPGDLLAVFDAGAYGASMSSNYNSRPRPAEVLVD 396 (417)
T ss_pred C-------CCCCceEEEEEeCCcCCCCEEeeccCCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCeEEEEE
Confidence 1 1113578999999999999999999999999999999999999999999999999999877753
No 9
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=1.3e-67 Score=522.39 Aligned_cols=357 Identities=25% Similarity=0.401 Sum_probs=313.1
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++| |+||+|+++|++|+++|+++++ +++++|++|||+++.|++++.+.|.||+|+|..|+++++++|+++++|+|+|
T Consensus 1 ~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~~~yavKaN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~I~~~~ 79 (373)
T cd06828 1 YGT-PLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTG 79 (373)
T ss_pred CCC-CEEEEcHHHHHHHHHHHHHhhCCCCcEEEEEehhCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCcccEEEeC
Confidence 578 9999999999999999999998 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCC--CCCCCCC---CCcCCCCCcccHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHP----KCDLLIRIKPPDDS--GAKHPLD---SKYGVDHHPQEIVPL 177 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~~--~~~~~~~---srfGi~~~~~~~~~~ 177 (409)
|.|+.++|+.|+++|+..+++||.+|+++|.+.++ +.+++|||++..+. +.+++++ +|||++ ++++.++
T Consensus 80 p~k~~~~l~~a~~~g~~~~~ids~~el~~l~~~a~~~~~~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~--~~e~~~~ 157 (373)
T cd06828 80 NGKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIP--LEQALEA 157 (373)
T ss_pred CCCCHHHHHHHHHcCCeEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCCCeecCCCCCCCCCC--HHHHHHH
Confidence 99999999999999965689999999999998865 57899999985432 3344443 899999 8999999
Q ss_pred HHHHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHHH
Q 015304 178 LEAAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASII 253 (409)
Q Consensus 178 ~~~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~i 253 (409)
++.++. .++++.|+|+|+||+..+.+.+.++++++.++++.+++.|+ .+++||+||||+++|.. .++++++++.|
T Consensus 158 ~~~~~~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~idiGGG~~~~~~~~~~~~~~~~~~~~i 236 (373)
T cd06828 158 YRRAKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGI-DLEFLDLGGGLGIPYRDEDEPLDIEEYAEAI 236 (373)
T ss_pred HHHHHhCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCCCCCcccCCCCCCCCHHHHHHHH
Confidence 998887 79999999999999988899999999999888888877787 99999999999998854 36899999999
Q ss_pred HHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccccccc
Q 015304 254 KEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLAS 333 (409)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~ 333 (409)
.+.++++++.. +++++++|||||++++||+++|+|+++|++++..++++|.|+++.+.+.+|...++. .++...
T Consensus 237 ~~~~~~~~~~~----~~~~l~~EpGR~lv~~~g~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~-~~~~~~- 310 (373)
T cd06828 237 AEALKELCEGG----PDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGAYHEI-VPVNKP- 310 (373)
T ss_pred HHHHHHHHccC----CCceEEEecCcceeecceEEEEEEEEEEecCCCEEEEEeCCcccchhhHhcCCccce-EEccCC-
Confidence 99999998521 467899999999999999999999999987665778888888776667677665543 223221
Q ss_pred ccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEE
Q 015304 334 SLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 334 ~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
+.....++.|+||+|++.|++.++..+|++++||+|+|.+||||+++++++||++++|++++
T Consensus 311 ------~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~f~~~~~p~~v~ 372 (373)
T cd06828 311 ------GEGETEKVDVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVL 372 (373)
T ss_pred ------CCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCcEEe
Confidence 10145789999999999999999999999999999999999999999999999999998775
No 10
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=5.2e-67 Score=522.47 Aligned_cols=354 Identities=21% Similarity=0.348 Sum_probs=295.4
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCC----CcE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSP----DRI 102 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~----~~I 102 (409)
++++| |+||||++.|++|++++++ ++ +++||+|||+++.|++++.+.|+||||+|.+|++.++++|++| ++|
T Consensus 22 ~~~~t-P~~v~d~~~l~~n~~~l~~-~~--~i~yavKan~~~~il~~~~~~G~g~dvaS~~E~~~a~~~G~~~~~~~~~I 97 (420)
T PRK11165 22 AEYGT-PLWVYDADIIRRRIAQLRQ-FD--VIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERALAAGYKPGTEPDEI 97 (420)
T ss_pred HHhCC-CEEEEcHHHHHHHHHHHhc-cC--cceEEehhCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCCCCCCCeE
Confidence 36789 9999999999999999986 76 6899999999999999999999999999999999999999998 599
Q ss_pred EEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCC--CCCCCC---CCCcCCCCCcccHHHH
Q 015304 103 IYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDS--GAKHPL---DSKYGVDHHPQEIVPL 177 (409)
Q Consensus 103 i~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~--~~~~~~---~srfGi~~~~~~~~~~ 177 (409)
+|+||.|++++|+.|++.|+. +++||++||++|.+.+++.+|+||||++.+. +....+ .+|||++ .+++.++
T Consensus 98 i~~gp~k~~~~l~~a~~~gv~-i~vDs~~el~~i~~~~~~~~v~lRvn~~~~~~~~~~~~~~~~~sKFGi~--~~~~~~~ 174 (420)
T PRK11165 98 VFTADVIDRATLARVVELKIP-VNAGSIDMLDQLGQVSPGHRVWLRINPGFGHGHSQKTNTGGENSKHGIW--HEDLPAA 174 (420)
T ss_pred EEeCCCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhcCCCcEEEEECCCCCCCCCCceecCCCCCCCCCC--HHHHHHH
Confidence 999999999999999999994 8999999999999999889999999985432 112222 4899999 8888888
Q ss_pred HHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHHHH
Q 015304 178 LEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASIIK 254 (409)
Q Consensus 178 ~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~i~ 254 (409)
++.++..++++.|||+|.||+. +.+.+.+.+ ..+.+.+++.|+ .+++||+||||+++|.. .++++++++.+.
T Consensus 175 ~~~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~---~~l~~~~~~~g~-~~~~IdiGGGf~~~y~~~~~~~d~~~~~~~~~ 249 (420)
T PRK11165 175 LAVIQRYGLKLVGIHMHIGSGV-DYGHLEQVC---GAMVRQVIELGQ-DIEAISAGGGLSIPYREGEEPVDTEHYFGLWD 249 (420)
T ss_pred HHHHHhCCCcEEEEEEeccCCC-ChHHHHHHH---HHHHHHHHHhCC-CCcEEEeCCCcccCCCCCCCCCCHHHHHHHHH
Confidence 8888878999999999999987 666665444 445566777888 99999999999999853 247888876554
Q ss_pred HHHH---hhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccccc
Q 015304 255 EALH---AYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTL 331 (409)
Q Consensus 255 ~~l~---~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~ 331 (409)
...+ ++++ .+++|++|||||++++||+++|+|+++|..++.+++++|.|++..+.|.+|+.+++. .++..
T Consensus 250 ~~~~~~~~~~~------~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~~~~~i~D~G~n~l~~p~~~~~~~~~-~~~~~ 322 (420)
T PRK11165 250 AARKRIARHLG------HPVKLEIEPGRFLVAESGVLVAQVRAVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHI-SVLAA 322 (420)
T ss_pred HHHHHHHhhcC------CCceEEEccCcceeecceEEEEEEEEEEecCCcEEEEEeCCcccCchhhhcccccce-EEecC
Confidence 4443 3432 146899999999999999999999999987655677788888777778888877654 22332
Q ss_pred ccccccCCCCCCceeEEEEccccCCCCccccC-------CCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 332 ASSLTTSKGLSRTYNSKVFGPTCDAADEVFSG-------HKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~-------~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
.... ......+++.|+||+|++.|++..+ +.||++++||+|+|.++|||+++|+++||++|+|++|++
T Consensus 323 ~~~~---~~~~~~~~~~v~Gp~C~~~D~l~~~~~~~~~~~~lP~l~~GD~l~i~~~GAY~~~~ss~fn~~~~p~~v~~ 397 (420)
T PRK11165 323 DGRS---LEEAPTVDTVVAGPLCESGDVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPEVLF 397 (420)
T ss_pred CCcc---cccCCceEEEEEeCCCCCCCEEeeccCcccceeECCCCCCCCEEEEecCCCCcHHHHHhhcCCCCCcEEEE
Confidence 1110 0111246899999999999999876 789999999999999999999999999999999988776
No 11
>PLN02537 diaminopimelate decarboxylase
Probab=100.00 E-value=7.9e-67 Score=521.60 Aligned_cols=355 Identities=24% Similarity=0.320 Sum_probs=304.2
Q ss_pred CC-CCccEEEEeHHHHHHHHHHHHHhCCC--cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEE
Q 015304 28 EF-DEVPFYILDLGVVVTLYNQMISKLPM--IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 28 ~~-~t~P~~v~d~~~l~~n~~~~~~~~~~--~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
++ +| |+|+||+++|++|+++|++++++ .+++||+|||+++.|++.+.+.|++++|+|..|++.++++|+++++|+|
T Consensus 14 ~~~~t-P~~v~d~~~l~~N~~~~~~~~~~~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~~al~~G~~~~~ii~ 92 (410)
T PLN02537 14 SVEKR-PFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRCIF 92 (410)
T ss_pred hcCCC-CeEEEeHHHHHHHHHHHHHHhccCCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCcceEEE
Confidence 44 79 99999999999999999999984 5699999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC--CCCCCCC---CCcCCCCCcccHH
Q 015304 105 ANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDS--GAKHPLD---SKYGVDHHPQEIV 175 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~--~~~~~~~---srfGi~~~~~~~~ 175 (409)
+||.|++++++.|+++|+. +++||++||++|.+.+ +..+|+|||||+.+. +..++++ +|||++ .+++.
T Consensus 93 ~g~~k~~~~l~~a~~~gv~-i~ids~~el~~l~~~a~~~~~~~~v~lRvnp~~~~~~~~~i~tG~~~sRfGi~--~~~~~ 169 (410)
T PLN02537 93 NGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR--NEKLQ 169 (410)
T ss_pred ECCCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCccccCCCCCCCCCC--HHHHH
Confidence 9999999999999999995 8999999999998865 346899999985432 3334443 899999 88899
Q ss_pred HHHHHHHHc--CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC----CCCHHHH
Q 015304 176 PLLEAAEAS--GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN----TKSFQEA 249 (409)
Q Consensus 176 ~~~~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~----~~~~~~~ 249 (409)
++++.+++. ++++.|+|||+||+..+.+.|.++++.+.++++.+++.|+ ++++||+||||+++|.. .++++++
T Consensus 170 ~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~idiGGGf~v~y~~~~~~~~~~~~~ 248 (410)
T PLN02537 170 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGF-ELSYLNIGGGLGIDYYHAGAVLPTPRDL 248 (410)
T ss_pred HHHHHHHhCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHHcCC-CccEEEcCCCccccCCCCCCCCCCHHHH
Confidence 999988774 8999999999999998999999999999888988888898 99999999999999852 2589999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccc
Q 015304 250 ASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPL 329 (409)
Q Consensus 250 ~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l 329 (409)
++.|++.+.++ ++++++|||||++++||+|+|+|+++|+.++.+++++|.|+....+|.+|+..++. .++
T Consensus 249 ~~~i~~~~~~~---------~~~li~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~dgg~~~~~~p~~~~~~~~~-~~~ 318 (410)
T PLN02537 249 IDTVRELVLSR---------DLTLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI-ELV 318 (410)
T ss_pred HHHHHHHHHhc---------CCEEEEccChhhhccceEEEEEEEEEeecCCcEEEEEeCccccccchHhhccccce-eEc
Confidence 99888888643 35799999999999999999999999987655667777666665567677665432 222
Q ss_pred ccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 015304 330 TLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYV 403 (409)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~~ 403 (409)
.... .++ +..+++|+||+|++.|++.+++.||++++||+|+|.++|||+++|+++||++++|++|++-
T Consensus 319 ~~~~-----~~~-~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~~~~~GAY~~s~~s~fn~~~~p~~v~~~ 386 (410)
T PLN02537 319 SPPP-----PDA-EVSTFDVVGPVCESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVE 386 (410)
T ss_pred cCCC-----CCC-CceEEEEecCccCCCCEEEEcccCCCCCCCCEEEEeCCCcccHhhhHHhcCCCCCeEEEEE
Confidence 2211 011 3467899999999999999999999999999999999999999999999999999776653
No 12
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=3.5e-66 Score=512.32 Aligned_cols=352 Identities=25% Similarity=0.362 Sum_probs=297.1
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhC----CCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKL----PMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~----~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
+++| |+|+||+++|++|++++++++ ++++++||+|||+++.|++.|.+.|++++|+|.+|++.++++|+++++|+
T Consensus 4 ~~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~~~dvaS~~E~~~~~~~G~~~~~Ii 82 (379)
T cd06841 4 SYGS-PFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKRII 82 (379)
T ss_pred hcCC-CeEEEeHHHHHHHHHHHHHHHhhcCCCeEEEEEehhcccHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCChHHEE
Confidence 6889 999999999999999999988 46899999999999999999999999999999999999999999989999
Q ss_pred EeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHH
Q 015304 104 YANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLE 179 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~ 179 (409)
|+||.|++++|+.|+++|+ .+++||++|+++|.+.++ +.+++|||++..+.+ ..+|||++ .+++.++++
T Consensus 83 ~~g~~k~~~~l~~a~~~g~-~i~ids~~el~~l~~~~~~~~~~~~v~lRv~~~~g~~----~~~rfGi~--~~e~~~~~~ 155 (379)
T cd06841 83 FNGPYKSKEELEKALEEGA-LINIDSFDELERILEIAKELGRVAKVGIRLNMNYGNN----VWSRFGFD--IEENGEALA 155 (379)
T ss_pred EECCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHhcCCcceEEEEECCCCCCC----CCCCCCCc--hhhhHHHHH
Confidence 9999999999999999999 489999999999987653 468999999843221 35999999 888877776
Q ss_pred HHHH----cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC---------CCCH
Q 015304 180 AAEA----SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN---------TKSF 246 (409)
Q Consensus 180 ~~~~----~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~---------~~~~ 246 (409)
.++. .++++.|+|+|+||+..+.+.|.++++++..+++.+ .|. ++++|||||||+++|.. .+++
T Consensus 156 ~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~--~g~-~~~~idiGGG~~~~y~~~~~~~~~~~~~~~ 232 (379)
T cd06841 156 ALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL--FGL-ELEYLDLGGGFPAKTPLSLAYPQEDTVPDP 232 (379)
T ss_pred HHHHhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh--cCC-CCCEEEeCCCcCcCcCccccccccCCCCCH
Confidence 6644 389999999999999989999999988877766554 487 99999999999999854 3689
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccc
Q 015304 247 QEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKC 326 (409)
Q Consensus 247 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~ 326 (409)
+++++.|.+.++++++.. .+++++++|||||++++||+++|+|+++|.+++..++++|.|++....+ |...++.
T Consensus 233 ~~~~~~i~~~l~~~~~~~---~~~~~l~~EpGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~--~~~~~~~- 306 (379)
T cd06841 233 EDYAEAIASTLKEYYANK---ENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGRNIAVTDAGINNIPTI--FWYHHPI- 306 (379)
T ss_pred HHHHHHHHHHHHHHhhcC---CCCCEEEEecCcceeccceEEEEEEEEEEEcCCcEEEEEeCCcccCcCc--ccCCceE-
Confidence 999999999999997521 2467899999999999999999999999986665677788777654333 4443332
Q ss_pred cccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 015304 327 TPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYV 403 (409)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~~ 403 (409)
.++.... .+. ...++.|+||+|+++|++..++.+|++++||+|+|.++|||+++|+++| ++++|++|++-
T Consensus 307 ~~~~~~~-----~~~-~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~s~~f-~~~~p~~v~~~ 376 (379)
T cd06841 307 LVLRPGK-----EDP-TSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQF-IRPRPAVYLID 376 (379)
T ss_pred EEeccCC-----CCC-CcceEEEECCCcCCCCEEeeCCcCCCCCCCCEEEEeCCCCCChhhCccc-cCCCCcEEEEe
Confidence 1222111 011 3468999999999999999999999999999999999999999999999 57889887763
No 13
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=6.5e-66 Score=509.25 Aligned_cols=356 Identities=35% Similarity=0.592 Sum_probs=311.0
Q ss_pred ccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 32 VPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 32 ~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
.|+|+||+++|++|+++|++.++ +++++|++|||+++.|++.+.+.|++|+|+|.+|++.++++|+++++|+|+||.|+
T Consensus 1 TP~~vid~~~l~~n~~~l~~~~~~~~~i~~avKan~~~~i~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~iv~~gp~~~ 80 (368)
T cd06810 1 TPFYVYDLDIIRAHYAALKEALPSGVKLFYAVKANPNPHVLRTLAEAGTGFDVASKGELALALAAGVPPERIIFTGPAKS 80 (368)
T ss_pred CCEEEeeHHHHHHHHHHHHHhCCCCCeEEEEEccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCHHHEEEcCCCCC
Confidence 19999999999999999999998 79999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCC-CC---CCCCCcCCCCCcccHHHHHHHHH
Q 015304 111 VSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGA-KH---PLDSKYGVDHHPQEIVPLLEAAE 182 (409)
Q Consensus 111 ~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~-~~---~~~srfGi~~~~~~~~~~~~~~~ 182 (409)
+++++.++++|+..+++||++|+++|.+.+ ++.+++||||++...+. .. ...+|||++ ++++.++++.++
T Consensus 81 ~~~l~~~~~~~~~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~--~~e~~~~~~~~~ 158 (368)
T cd06810 81 VSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLS--LSEARAALERAK 158 (368)
T ss_pred HHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCC--HHHHHHHHHHHH
Confidence 999999999995358999999999998875 56899999998653211 11 123899999 899999998887
Q ss_pred HcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC-CCCCHHHHHHHHHHHHHhhC
Q 015304 183 ASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS-NTKSFQEAASIIKEALHAYF 261 (409)
Q Consensus 183 ~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~-~~~~~~~~~~~i~~~l~~~~ 261 (409)
+.++++.|+|+|+||+..+.+.|.++++++.++++.+++.|. ++++||+||||+++|. ..++++++++.|.+.+.+++
T Consensus 159 ~~~l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~-~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~ 237 (368)
T cd06810 159 ELDLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGF-PLEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKKYF 237 (368)
T ss_pred hCCCcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCCCcccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 767999999999999998999999999999888888888887 9999999999999987 56799999999999999987
Q ss_pred CCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccc-cccccccccccccccccccCCC
Q 015304 262 PNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVN-YDEAIAKCTPLTLASSLTTSKG 340 (409)
Q Consensus 262 ~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 340 (409)
+.. +.+++++||||+++++|++|+|+|+++|..++.+++++|+|+++.+.+.+ ++..++ +.++..... .
T Consensus 238 ~~~----~~~~l~~EpGr~l~~~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~-~~~~~~~~~-----~ 307 (368)
T cd06810 238 PND----PGVTLILEPGRYIVAQAGVLVTRVVAVKVNGGRFFAVVDGGMNHSFRPALAYDAYHP-ITPLKAPGP-----D 307 (368)
T ss_pred ccC----CCcEEEEecChhhhhhceEEEEEEEEEEecCCcEEEEEeCccccccccccccCCcce-eEEeCCCcc-----c
Confidence 531 35789999999999999999999999998776788999999998888776 443333 334433210 1
Q ss_pred CCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEE
Q 015304 341 LSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 341 ~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
.+..++.|+||+|+++|++.++..+|++++||+|+|.++|||+++++++||++++|++|+
T Consensus 308 -~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~ 367 (368)
T cd06810 308 -EPLVPATLAGPLCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEYL 367 (368)
T ss_pred -CCceeEEEECCCCCCCcEEeecccCCCCCCCCEEEEcCCCCCchhhcccccCCCCCcEEe
Confidence 145789999999999999999999999999999999999999999999999999997754
No 14
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=5.8e-66 Score=510.39 Aligned_cols=357 Identities=20% Similarity=0.237 Sum_probs=298.7
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCH
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPV 111 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 111 (409)
|+||||+++|++|+++|++.+| +++++||+|||+++.|+++|.+.|.+|+|+|.+|++.++++| ++++|+|+||.|++
T Consensus 3 ~~yv~d~~~l~~N~~~l~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~~-~~~~I~~~gp~k~~ 81 (377)
T cd06843 3 CAYVYDLAALRAHARALRASLPPGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAV-PDAPLIFGGPGKTD 81 (377)
T ss_pred EEEEEcHHHHHHHHHHHHHhcCCCCeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHhcC-CCCeEEEeCCCCCH
Confidence 9999999999999999999998 789999999999999999999988999999999999999998 67899999999999
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCC--CCCCCCCC---CCcCCCCCcccHHHHHHHHH
Q 015304 112 SHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDD--SGAKHPLD---SKYGVDHHPQEIVPLLEAAE 182 (409)
Q Consensus 112 ~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~--~~~~~~~~---srfGi~~~~~~~~~~~~~~~ 182 (409)
++++.|+++|+..+++||++||++|.+.+ ++.+++|||+++.+ .+..+.++ +|||++ ++++.++++.++
T Consensus 82 ~~l~~a~~~gi~~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~--~~~~~~~~~~~~ 159 (377)
T cd06843 82 SELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGID--EADLPDALELLR 159 (377)
T ss_pred HHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcC--HHHHHHHHHHHH
Confidence 99999999998767899999999998764 35789999998543 22233343 799999 899999999887
Q ss_pred H-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH-HHHHcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHHHHHHH
Q 015304 183 A-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFE-TAARLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASIIKEAL 257 (409)
Q Consensus 183 ~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~-~~~~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~i~~~l 257 (409)
+ .++++.|||+|+||+..+.+.|.++++.+.+++. ..++.|+ ++++||+||||+++|.. .++++++++.|++.+
T Consensus 160 ~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~idiGGGf~~~y~~~~~~~~~~~~~~~i~~~~ 238 (377)
T cd06843 160 DLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGL-DLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLL 238 (377)
T ss_pred hCCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCC-CCcEEEecCccccccCCCCCCCCHHHHHHHHHHHH
Confidence 7 4899999999999999999999988888655554 4556788 99999999999999853 358899999999999
Q ss_pred HhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccc-ccccccccc
Q 015304 258 HAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCT-PLTLASSLT 336 (409)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 336 (409)
++++ +++++++|||||++++||+++|+|+++|..++..++++|.|+++...|..|+..++... +...+....
T Consensus 239 ~~~~-------~~~~l~~EpGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 311 (377)
T cd06843 239 AEYE-------PGLTLRFECGRYISAYCGYYVTEVLDLKRSHGEWFAVLRGGTHHFRLPAAWGHNHPFSVLPVEEWPYPW 311 (377)
T ss_pred HhcC-------CCCEEEEccChhhhcCceEEEEEEEEEeecCCcEEEEEeCccccccchHHhcCCCceEecccccccccc
Confidence 8874 24679999999999999999999999998765445566667776656777776654321 111111000
Q ss_pred cCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCC-CCCCCCCCcEEE
Q 015304 337 TSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGT-NFNGYNTAAIPT 401 (409)
Q Consensus 337 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~-~fn~~~~p~~v~ 401 (409)
.... ....+++|+||+|+++|++.+++.||++++||+|+|.++|||+++|++ +||++|+|++|+
T Consensus 312 ~~~~-~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~i~~~GAY~~~~s~~~fn~~~~p~~v~ 376 (377)
T cd06843 312 PRPS-VRDTPVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIY 376 (377)
T ss_pred cccc-CCceEEEEEeCCCCCCCEEeeccccCCCCCCCEEEEcCCCccchhhchhhhhCCCCCCEEe
Confidence 0011 134789999999999999999999999999999999999999999995 999999999876
No 15
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=9.4e-66 Score=512.59 Aligned_cols=358 Identities=24% Similarity=0.349 Sum_probs=299.9
Q ss_pred CCC-CccEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEe
Q 015304 28 EFD-EVPFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 28 ~~~-t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~ 105 (409)
+++ | |+||||++.|++|+++|++++|+ ++++||+|||+++.|++.+.+.|.||||+|.+|++.++++|+++++|+|+
T Consensus 21 ~~g~t-P~~v~d~~~l~~n~~~l~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~G~~~~~I~~~ 99 (398)
T TIGR03099 21 RAGGT-PFYAYDRGLVSERVAALRKALPEELAIHYAVKANPMPALLAHMAPLVDGFDVASAGELAVALDTGYDPGCISFA 99 (398)
T ss_pred HhCCC-CEEEEeHHHHHHHHHHHHHhccccCcEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCChhHEEEe
Confidence 577 9 99999999999999999999984 89999999999999999999988999999999999999999998899999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC-CCCCCCC---CCcCCCCCcccHHHH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDS-GAKHPLD---SKYGVDHHPQEIVPL 177 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~-~~~~~~~---srfGi~~~~~~~~~~ 177 (409)
||.|+.++|++|+++|+ .+++||++||++|.+.+ ++.+++||||++... +..+.++ +|||++ .+++.++
T Consensus 100 gp~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~~~~srFGi~--~~e~~~~ 176 (398)
T TIGR03099 100 GPGKTDAELRRALAAGV-LINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGGGAKQFGID--AEQVPAA 176 (398)
T ss_pred CCCCCHHHHHHHHhCCC-EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccCCCCCcCCCC--HHHHHHH
Confidence 99999999999999999 58999999999998865 346899999984321 2223333 899999 8899999
Q ss_pred HHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHH-HHHHHHHcCCCCCcEEeecCCCCcCCCCC---CCHHHHHHHH
Q 015304 178 LEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKA-VFETAARLGNNKMRVLDIGGGFSFTNSNT---KSFQEAASII 253 (409)
Q Consensus 178 ~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~-~~~~~~~~g~~~~~~ldiGGG~~~~~~~~---~~~~~~~~~i 253 (409)
++.+++.++++.|+|+|.||+..+.+.|.+++.+... +.+..++.|+ .+++||+||||+++|..+ .++++++..+
T Consensus 177 ~~~~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~idiGGG~~v~~~~~~~~~~~~~~~~~l 255 (398)
T TIGR03099 177 LAFIKAADLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPA-PVRVINIGGGFGIPYFPGNPPLDLAPVGAAL 255 (398)
T ss_pred HHHHHhCCCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEeCCcccCCCCCCCCCCCHHHHHHHH
Confidence 9988877999999999999998888777766555443 4556677788 899999999999998543 5889999999
Q ss_pred HHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccc-c----ccccccccc
Q 015304 254 KEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVN-Y----DEAIAKCTP 328 (409)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~-~----~~~~~~~~~ 328 (409)
.+.+.+++... ++++|++|||||++++||+++|+|+++|.+++..++++|.|+++.+.+.. | ...+|. .
T Consensus 256 ~~~~~~~~~~~----~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~--~ 329 (398)
T TIGR03099 256 AALFARLRDAL----PEVEILLELGRYLVGEAGIYVCRVIDRKISRGETFLVTDGGLHHHLSASGNFGQVIRRNYPV--V 329 (398)
T ss_pred HHHHHHHhhcC----CCCEEEEecChheeccceEEEEEEEEEEecCCcEEEEEcCCccccccccccccchhccCcee--E
Confidence 99998886432 46889999999999999999999999998666567777888877655431 1 112221 1
Q ss_pred cccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccC-CCCCCCCCCcEEEE
Q 015304 329 LTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARG-TNFNGYNTAAIPTY 402 (409)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~-~~fn~~~~p~~v~~ 402 (409)
+... ..+....++.|+||+|+++|+|..++.+|++++||+|+|.++|||+++|+ ++||++|+|++|++
T Consensus 330 ~~~~------~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~~~~GD~l~~~~~GAY~~~~s~~~fn~~~~~~~v~~ 398 (398)
T TIGR03099 330 IGNR------IGGAVREIASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVELLV 398 (398)
T ss_pred EccC------CCCCCceEEEEEeCCCCCCCEEeecCcCCCCCCCCEEEEcCCCCcchhhChHhhhCCCCCCEEeC
Confidence 1111 01113578999999999999999999999999999999999999999999 69999999999873
No 16
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=1.2e-65 Score=509.82 Aligned_cols=359 Identities=25% Similarity=0.355 Sum_probs=304.1
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEe
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~ 105 (409)
.+++| |+||||+++|++|+++|++++|+ ++++|++|||+++.|++.+.+.|.||+|+|++|++.++++|+++++|+++
T Consensus 3 ~~~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~~yavKan~~~~v~~~l~~~g~g~~vaS~~E~~~~~~~G~~~~~I~~~ 81 (382)
T cd06839 3 DAYGT-PFYVYDRDRVRERYAALRAALPPAIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKILFA 81 (382)
T ss_pred cccCC-CEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeccCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCHHHEEEe
Confidence 36899 99999999999999999999984 89999999999999999999999999999999999999999998899999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCC-CCCC---CCCCcCCCCCcccHHHH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSG-AKHP---LDSKYGVDHHPQEIVPL 177 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~-~~~~---~~srfGi~~~~~~~~~~ 177 (409)
||.|++++|+.|+++|+..+++||++|+++|.+.+ ++.+++||||++...+ .... ..+|||++ .+++.++
T Consensus 82 ~~~k~~~~l~~a~~~g~~~i~vds~~el~~l~~~a~~~~~~~~v~lRin~~~~~~~~g~~~~~~~sKfG~~--~~~~~~~ 159 (382)
T cd06839 82 GPGKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMGGGPSQFGID--VEELPAV 159 (382)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCccccCCCCCCcCCC--HHHHHHH
Confidence 99999999999999995458999999999998864 3578999999843211 1111 13899999 8999999
Q ss_pred HHHHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHH
Q 015304 178 LEAAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAA-RLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASI 252 (409)
Q Consensus 178 ~~~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~ 252 (409)
++.+++ .++++.|||+|.||+..+.+.+.++++++.++++.++ +.|. ++.+||+||||+++|.. .+++++++..
T Consensus 160 ~~~~~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~idiGGG~~~~~~~~~~~~~~~~~~~~ 238 (382)
T cd06839 160 LARIAALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGL-PLEFLDLGGGFGIPYFPGETPLDLEALGAA 238 (382)
T ss_pred HHHHHhCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEecCccccccCCCCCCCCHHHHHHH
Confidence 998877 6899999999999998888888888888877776554 5787 99999999999999853 4689999999
Q ss_pred HHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccc-----ccccccccc
Q 015304 253 IKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVN-----YDEAIAKCT 327 (409)
Q Consensus 253 i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~-----~~~~~~~~~ 327 (409)
|...+.++... .++++|++|||||++++||+++|+|+++|++++..++++|+|+++.+.+.+ |...++. .
T Consensus 239 i~~~l~~~~~~----~~~~~l~~EPGR~l~~~ag~lv~~V~~~k~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~-~ 313 (382)
T cd06839 239 LAALLAELGDR----LPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFLVTDGGMHHHLAASGNFGQVLRRNYPL-A 313 (382)
T ss_pred HHHHHHHHhcC----CCCceEEEecChhhhhhceEEEEEEEEEeecCCCEEEEEECCcccchhhhcccccccccccee-E
Confidence 99999988432 246789999999999999999999999998766667888888877655433 3333332 1
Q ss_pred ccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccC-CCCCCCCCCcEEE
Q 015304 328 PLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARG-TNFNGYNTAAIPT 401 (409)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~-~~fn~~~~p~~v~ 401 (409)
+.... ++....++.|+||+|++.|++.+++.+|++++||+|+|.+||||+++|+ ++||++|+|++|+
T Consensus 314 ~~~~~-------~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~~~~ 381 (382)
T cd06839 314 ILNRM-------GGEERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVL 381 (382)
T ss_pred EccCC-------CCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEecCCCcccccChhhHhCCCCCCEEe
Confidence 12111 1114578999999999999999999999999999999999999999998 6999999998876
No 17
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=3.7e-65 Score=498.08 Aligned_cols=336 Identities=18% Similarity=0.186 Sum_probs=268.8
Q ss_pred ccEEEEeHHHHHHHHHHHHHhC--CCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCC
Q 015304 32 VPFYILDLGVVVTLYNQMISKL--PMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCK 109 (409)
Q Consensus 32 ~P~~v~d~~~l~~n~~~~~~~~--~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k 109 (409)
.|+||||++.|++|+++|++++ |+++++||+|||+++.|++.|+++|+||||+|.+|+++++.++ ++ ++++.+|.|
T Consensus 1 tP~yv~d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~a~~~~-~~-~~i~~~~~k 78 (346)
T cd06829 1 TPCYVLDEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTASSLFEARLGREEF-GG-EVHTYSPAY 78 (346)
T ss_pred CCeEEeeHHHHHHHHHHHHHHHhccCCEEEEEEhhcCCHHHHHHHHHhCCccEecCHHHHHHHHHHC-CC-ceEEECCCC
Confidence 1999999999999999999866 6899999999999999999999999999999999999999873 44 555558889
Q ss_pred CHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC--CCeEEEEEecCCCCC--CCCC---CCCCcCCCCCcccHHHHHHHHH
Q 015304 110 PVSHIKYAANVGVNLTTFDSVEELHKIRKWHP--KCDLLIRIKPPDDSG--AKHP---LDSKYGVDHHPQEIVPLLEAAE 182 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~--~~~v~lRv~~~~~~~--~~~~---~~srfGi~~~~~~~~~~~~~~~ 182 (409)
+.++|+.|+++|+ .+++||++||++|.+.++ +.+++|||||+...+ ..++ ..+|||++ .+++.+
T Consensus 79 ~~~el~~a~~~~~-~~~~Ds~~EL~~l~~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~--~~~~~~------ 149 (346)
T cd06829 79 RDDEIDEILRLAD-HIIFNSLSQLERFKDRAKAAGISVGLRINPEYSEVETDLYDPCAPGSRLGVT--LDELEE------ 149 (346)
T ss_pred CHHHHHHHHHcCC-EEEECCHHHHHHHHHHHhccCCeEEEEECCCCCCCCCceecCCCCCCCCCCC--hHHhhh------
Confidence 9999999999988 589999999999999887 789999999864321 1222 25899999 776543
Q ss_pred HcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCC
Q 015304 183 ASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFP 262 (409)
Q Consensus 183 ~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~ 262 (409)
..++++.|||||+||+. +.+.|.++++.+.+++. +... ++++|||||||+++|. ..+++++++.+++.++++
T Consensus 150 ~~~~~v~Glh~HvGS~~-~~~~~~~~~~~~~~~~~---~~~~-~~~~lDiGGGf~v~~~-~~~~~~~~~~i~~~~~~~-- 221 (346)
T cd06829 150 EDLDGIEGLHFHTLCEQ-DFDALERTLEAVEERFG---EYLP-QLKWLNLGGGHHITRP-DYDVDRLIALIKRFKEKY-- 221 (346)
T ss_pred hhhcCceEEEEccCccc-CHHHHHHHHHHHHHHHH---HHHh-cCcEEEcCCCcCCCcC-CCCHHHHHHHHHHHHHHh--
Confidence 23578999999999999 99999888777665543 2334 7899999999999863 357899988888877755
Q ss_pred CCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccccccccCCCCC
Q 015304 263 NELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLS 342 (409)
Q Consensus 263 ~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 342 (409)
++++++|||||++++||+++|+|+++|+. +.+++++|.|++..+.+. +... .++..+.... .+ .
T Consensus 222 -------~~~li~EPGR~lva~ag~lvt~V~~~K~~-~~~~~~~d~g~~~~~~~~-~~~~-~~~~~~~~~~-----~~-~ 285 (346)
T cd06829 222 -------GVEVYLEPGEAVALNTGYLVATVLDIVEN-GMPIAILDASATAHMPDV-LEMP-YRPPIRGAGE-----PG-E 285 (346)
T ss_pred -------CCEEEEeCchhhhhcceEEEEEEEEEEEc-CceEEEEeCChhhcCchh-hccC-CCccccCCCC-----CC-C
Confidence 25699999999999999999999999976 345777887776544332 2111 1211111110 01 1
Q ss_pred CceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 343 RTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 343 ~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
...+++|+||+|++.|++.....+|++++||||+|.++|||+++|+++||++++|++|+|
T Consensus 286 ~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fn~~~~p~~v~~ 345 (346)
T cd06829 286 GAHTYRLGGNSCLAGDVIGDYSFDEPLQVGDRLVFEDMAHYTMVKTNTFNGVRLPSIAIR 345 (346)
T ss_pred CceEEEEEcCCCCcccEEeecccCCCCCCCCEEEEeCchhhhhhhhccccCCCCCeEEec
Confidence 346899999999999999864433379999999999999999999999999999988775
No 18
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=100.00 E-value=1.2e-64 Score=499.20 Aligned_cols=344 Identities=17% Similarity=0.141 Sum_probs=271.8
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhC--CCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKL--PMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~--~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+| |+||||++.|++|+++|++++ ++++++||+|||+++.|+++|+++|+|+||+|.+|++.|+++ ++ ++++++|
T Consensus 1 ~~t-P~yvyd~~~i~~~~~~l~~~~~~~~~~i~YAvKAN~~~~il~~l~~~g~G~D~aS~gEl~~al~a-~~-~~~i~~~ 77 (380)
T TIGR01047 1 IPT-PAFVLEEEKLRKNLEILEHVQQQSGAKVLLALKGFAFWGVFPILREYLDGCTASGLWEAKLAKEE-FG-KEIHVYS 77 (380)
T ss_pred CCC-CEEEecHHHHHHHHHHHHHHHhhcCCEEEEEEcccCChHHHHHHHHHCCcccccCHHHHHHHHHH-CC-CcEEEEC
Confidence 378 999999999999999999877 468899999999999999999999999999999999999988 76 6777789
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC--C--CCeEEEEEecCCCCC--CCCCC---CCCcCCCCCcccHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH--P--KCDLLIRIKPPDDSG--AKHPL---DSKYGVDHHPQEIVPL 177 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~--~--~~~v~lRv~~~~~~~--~~~~~---~srfGi~~~~~~~~~~ 177 (409)
|.|++++|+.|+++|+ .+++||++||++|.+++ + ..+|+|||||+...+ ....+ .||||++ .+++.+.
T Consensus 78 ~~k~~~el~~a~~~g~-~i~idS~~el~~l~~~a~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~--~~~~~~~ 154 (380)
T TIGR01047 78 PAYSEEDVPEIIPLAD-HIIFNSLAQWARYRHLVEGKNSAVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQ--ADHFEES 154 (380)
T ss_pred CCCCHHHHHHHHHcCC-EEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCcccccCCCCCCCCCCC--HHHHhHh
Confidence 9999999999999998 58999999999999876 2 358999999964321 22222 4899999 7776554
Q ss_pred HHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 015304 178 LEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEAL 257 (409)
Q Consensus 178 ~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l 257 (409)
+ .+++.|||||+||+ .+.+.|.+.++.+.++. .+... .+++|||||||+++|. ..+++.+++.+++.+
T Consensus 155 ~------~~~i~GlH~HiGS~-~~~~~~~~~i~~~~~~~---~~~~~-~~~~iDiGGGfgv~y~-~~~~~~~~~~i~~~~ 222 (380)
T TIGR01047 155 L------LDGINGLHFHTLCE-KDADALERTLEVIEERF---GEYLP-QMDWVNFGGGHHITKP-GYDVEKLIAVIKAFA 222 (380)
T ss_pred H------hhcCcEEEEecCCC-CCHHHHHHHHHHHHHHH---HHhhC-CCCEEEeCCCcCCCCC-CCCHHHHHHHHHHHH
Confidence 2 35788999999999 88888887777765544 33344 7899999999999874 357888887777766
Q ss_pred HhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccccccccc--
Q 015304 258 HAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSL-- 335 (409)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~-- 335 (409)
.++ +++|++|||||++++||+++|+|+++|+. +..++++|.|++..+ +..+... ++|.++......
T Consensus 223 ~~~---------~~~li~EPGR~lva~ag~lv~~V~~~K~~-~~~~~~vD~g~~~~~-~~~~~~~-~~p~~~~~~~~~~~ 290 (380)
T TIGR01047 223 ERH---------GVQVILEPGEAIGWQTGFLVASVVDIVEN-EKKIAILDVSFEAHM-PDTLEMP-YRPSVLGASDPATR 290 (380)
T ss_pred HHh---------CCEEEEeCchHHHhcCeeEEEEEEEEEEC-CeeEEEEecChHhcC-hhhhccC-CCcccccCCCcccc
Confidence 543 36799999999999999999999999975 445677787776554 2212111 111112110000
Q ss_pred ccC--CCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 336 TTS--KGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 336 ~~~--~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
... ....+..+++|+||+|+++|+|.++..+|++++||+|+|.++|||+++|+++||++++|++|++
T Consensus 291 ~~~~~~~~~~~~~~~v~G~~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~smss~fn~~~~p~~v~~ 359 (380)
T TIGR01047 291 ENEEISLKEGQFSYVLGGCTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKNTTFNGVKLPSLGCL 359 (380)
T ss_pred ccccccccCCceeEEEEcCCCCcccEEeecccCCCCCCCCEEEEcCcCChhhhccCCCCCCCCCcEEEE
Confidence 000 0001345789999999999999987778899999999999999999999999999999988776
No 19
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=2.8e-64 Score=541.45 Aligned_cols=350 Identities=23% Similarity=0.382 Sum_probs=299.5
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhC--CCCCCcEEEe
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLAL--GVSPDRIIYA 105 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~--G~~~~~Ii~~ 105 (409)
+.+| |+||||++.|++|+++|++.++..+++||+|||+++.|++++.+.|+||||+|.+|+++++++ |+++++|+|+
T Consensus 500 ~~~t-P~yV~d~~~i~~n~~~l~~~~~~~~i~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Ii~~ 578 (861)
T PRK08961 500 DAGS-PCYVYHLPTVRARARALAALAAVDQRFYAIKANPHPAILRTLEEEGFGFECVSIGELRRVFELFPELSPERVLFT 578 (861)
T ss_pred ccCC-CEEEEEHHHHHHHHHHHHhcCCCCcEEEEeecCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHhcCCCCCCeEEEC
Confidence 4699 999999999999999999876778899999999999999999999999999999999999998 9999999999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCC--CCCCCC---CCCcCCCCCcccHHHHHHH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDS--GAKHPL---DSKYGVDHHPQEIVPLLEA 180 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~--~~~~~~---~srfGi~~~~~~~~~~~~~ 180 (409)
||.|+.++|+.|+++|+. +++||++||++|.+++++.+++|||||+... +..+.+ .+|||++ ++++.++++.
T Consensus 579 gp~K~~~~l~~A~~~gv~-i~vDS~~EL~~i~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~--~~~~~~~~~~ 655 (861)
T PRK08961 579 PNFAPRAEYEAAFALGVT-VTLDNVEPLRNWPELFRGREVWLRIDPGHGDGHHEKVRTGGKESKFGLS--QTRIDEFVDL 655 (861)
T ss_pred CCCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhCCCCcEEEEECCCCCCCCCcccccCCCCCCCCCC--HHHHHHHHHH
Confidence 999999999999999995 8999999999999999888999999986532 222333 4899999 9999999998
Q ss_pred HHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHHHHHHH
Q 015304 181 AEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASIIKEAL 257 (409)
Q Consensus 181 ~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~i~~~l 257 (409)
++..++++.|+|||.||+..+.+.|.+.++.+.+ .+++. . .+++||+||||+++|.. .++++.+++.+.+.+
T Consensus 656 ~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~---l~~~~-~-~~~~iDiGGGf~v~y~~~~~~~~~~~~~~~i~~~~ 730 (861)
T PRK08961 656 AKTLGITVVGLHAHLGSGIETGEHWRRMADELAS---FARRF-P-DVRTIDLGGGLGIPESAGDEPFDLDALDAGLAEVK 730 (861)
T ss_pred HHhCCCCEEEEEEecCCCCCCHHHHHHHHHHHHH---HHHhc-c-CCcEEEecCccCcCCCCCCCCCCHHHHHHHHHHHH
Confidence 8888999999999999999999988776555443 34443 2 78999999999999853 247888887776544
Q ss_pred HhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccccccccccc
Q 015304 258 HAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTT 337 (409)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (409)
..+ ++++|++|||||++++||+++|+|+++|++++.+++++|.|++....+.+|+.+++.. .+...
T Consensus 731 ~~~--------~~~~li~EPGR~lva~ag~lvt~V~~vK~~~~~~~~~~d~G~~~l~~p~~~~~~~~~~-~~~~~----- 796 (861)
T PRK08961 731 AQH--------PGYQLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLETGMNSLIRPALYGAYHEIV-NLSRL----- 796 (861)
T ss_pred hhc--------CCCEEEEccCceeeecceEEEEEEEEEEecCCceEEEECCcccccCChhhhcccccce-ecCCC-----
Confidence 322 3578999999999999999999999999877667788898887766777887765432 22211
Q ss_pred CCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 338 SKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 338 ~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
+..+..++.|+||+|+++|++..+..+|++++||+|+|.++|||+++|+++||++|+|++|++
T Consensus 797 --~~~~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~p~p~ev~~ 859 (861)
T PRK08961 797 --DEPAAGTADVVGPICESSDVLGKRRRLPATAEGDVILIANAGAYGYSMSSTYNLREPAREVVL 859 (861)
T ss_pred --CCCCceEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEeCCCcchHHHhhhhhCCCCCcEEEE
Confidence 111356899999999999999999999999999999999999999999999999999988774
No 20
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=1.8e-63 Score=497.75 Aligned_cols=353 Identities=22% Similarity=0.284 Sum_probs=283.5
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC----CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP----MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRI 102 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~----~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~I 102 (409)
++++| |+||||+++|++|+++++++++ +.+++||+|||+++.|++.+.+.|+||+|+|.+|++.++++|+++++|
T Consensus 6 ~~~~T-P~~v~d~~~l~~N~~~l~~~~~~~~~~~~~~yavKaN~~~~il~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~I 84 (423)
T cd06842 6 EAYGS-PLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVRGDRI 84 (423)
T ss_pred HhhCC-CEEEEcHHHHHHHHHHHHHHHHHhCCCeEEEEEeccCCCHHHHHHHHHcCCCEEECCHHHHHHHHHCCCCCCeE
Confidence 36899 9999999999999999999885 578999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHH
Q 015304 103 IYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH-----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPL 177 (409)
Q Consensus 103 i~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~-----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~ 177 (409)
+|+||.|+.++++.|++.|+. +++||++|+++|.+.+ ++.+++||||++.. ...+|||++ .+++.++
T Consensus 85 ~~~g~~k~~~~i~~a~~~gi~-i~vDs~~el~~l~~~a~~~~~~~~~v~lRIn~~~~-----~~~sRfGi~--~~e~~~~ 156 (423)
T cd06842 85 VATGPAKTDEFLWLAVRHGAT-IAVDSLDELDRLLALARGYTTGPARVLLRLSPFPA-----SLPSRFGMP--AAEVRTA 156 (423)
T ss_pred EEECCCCCHHHHHHHHhCCCE-EEECCHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC-----CCCCCCCCC--HHHHHHH
Confidence 999999999999999999995 8999999999998765 45789999998432 225999999 8899999
Q ss_pred HHHHHHc--CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCC-CCHHHHHHHHH
Q 015304 178 LEAAEAS--GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNT-KSFQEAASIIK 254 (409)
Q Consensus 178 ~~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~-~~~~~~~~~i~ 254 (409)
++.+++. ++++.|||+|+||+ +.+.+.++++.+.++++.+++.|+ ++++||+||||+++|... .+|+.++..+.
T Consensus 157 ~~~i~~~~~~l~l~Glh~H~gs~--~~~~~~~~~~~~~~~~~~l~~~g~-~~~~idiGGG~~~~y~~~~~~~~~~~~~~~ 233 (423)
T cd06842 157 LERLAQLRERVRLVGFHFHLDGY--SAAQRVAALQECLPLIDRARALGL-APRFIDIGGGFPVSYLADAAEWEAFLAALT 233 (423)
T ss_pred HHHHHhcCCCCeEEEEEEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCCCcCCCcCCcHHHHHHHHHhhh
Confidence 9988775 89999999999997 677888888888888887888888 999999999999998642 33434333333
Q ss_pred HHH-------------------------------------------------HhhCCCCCCCCCCcEEEEcCCceeeecc
Q 015304 255 EAL-------------------------------------------------HAYFPNELLPGSSLRVISEPGRFFTYSA 285 (409)
Q Consensus 255 ~~l-------------------------------------------------~~~~~~~~~~~~~~~l~~EpGR~lv~~a 285 (409)
+.+ ++.+.. .+++|++||||+++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~EpGR~lva~a 308 (423)
T cd06842 234 EALYGYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRD-----NGITLALEPGRALLDQC 308 (423)
T ss_pred hhhhccCCcccccccccccCCCcccccCCCCCCHHHHHHHHHhccccccccHHHHHHh-----cCCEEEEcCCHHHHhhc
Confidence 322 222211 24679999999999999
Q ss_pred EEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCcccc-CC
Q 015304 286 FTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFS-GH 364 (409)
Q Consensus 286 g~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~-~~ 364 (409)
|+|+|+|+++|+++.++++++.||.++.+.. |...+.. .++...... + .......+++|+||+|+++|+|++ ++
T Consensus 309 g~lvt~V~~vK~~~~~~~~~~~Dgg~~~~~~--~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~v~Gp~C~~~D~l~~~~~ 383 (423)
T cd06842 309 GLTVARVAFVKQLGDGNHLIGLEGNSFSACE--FSSEFLV-DPLLIPAPE-P-TTDGAPIEAYLAGASCLESDLITRRKI 383 (423)
T ss_pred CeEEEEEEEEeecCCCCeEEEEecCCCcCCc--cccceec-CceeccCCC-C-cCCCCCceEEEeCccccchhhhhhhhc
Confidence 9999999999987434566666665444432 4433321 121110100 0 001134678999999999999995 66
Q ss_pred CCC-CCCCCCEEEEcCCCccccccC-CCCCCCCCCcEEE
Q 015304 365 KLP-ELEVTDWLVFSEMGAYTRARG-TNFNGYNTAAIPT 401 (409)
Q Consensus 365 ~lp-~l~~GD~l~~~~~GAY~~s~~-~~fn~~~~p~~v~ 401 (409)
.+| ++++||+|+|.++|||+++++ ++||++|+|++|+
T Consensus 384 ~lp~~~~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~ev~ 422 (423)
T cd06842 384 PFPRLPKPGDLLVFPNTAGYQMDFLESRFHRHPLPRRVV 422 (423)
T ss_pred cCCCCCCCCCEEEEecchHHHHHhhhhhhcCCCCCcccc
Confidence 799 699999999999999999665 8999999998875
No 21
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00 E-value=5.6e-52 Score=425.59 Aligned_cols=375 Identities=23% Similarity=0.309 Sum_probs=301.5
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CcceEEecCcCCcHHHHHHHHHcC----
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLP----------MIHPHYAVKCNPEPALLEALAALG---- 78 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKan~~~~vl~~l~~~G---- 78 (409)
-++.+++++... +.++| |+||+|++.|++|+++++++|+ +++++||+|||+++.|++.+.+.|
T Consensus 48 i~L~~l~~~~~~--~~~gt-PlyV~~~~~L~~ri~~L~~aF~~a~~~~~y~g~~~~~YAiKaN~~~~Vl~~l~~~G~~~~ 124 (634)
T PRK05354 48 IDLAELVKELRE--RGLRL-PLLLRFPDILQDRVRSLNAAFKKAIEEYGYQGDYRGVYPIKVNQQRRVVEEIVASGKPYN 124 (634)
T ss_pred cCHHHHHHHhhc--cCCCC-CEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEeccCChHHHHHHHHHcCCCCc
Confidence 566677666553 58999 9999999999999999999886 358999999999999999999999
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHc---CCc-EEEecCHHHHHHHHhHCC----CCeEEEEEe
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANV---GVN-LTTFDSVEELHKIRKWHP----KCDLLIRIK 150 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~---gv~-~~~vds~~el~~i~~~~~----~~~v~lRv~ 150 (409)
+|+||+|.+|+.+|+++|++++++++.++.|+.++|+.|+.. |.. ++++||++||++|.++++ +.+++|||+
T Consensus 125 ~GlEv~S~~EL~~AL~~g~~~~~lIi~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~~p~IglRi~ 204 (634)
T PRK05354 125 LGLEAGSKPELMAVLALAGDPGALIVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRAR 204 (634)
T ss_pred eeEEECCHHHHHHHHHcCCCCCcEEEcCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 799999999999999999998885555558999999998743 433 589999999999988753 468999999
Q ss_pred cCCC-CCCCCCC---CCCcCCCCCcccHHHHHHHHHHcC-C-eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 151 PPDD-SGAKHPL---DSKYGVDHHPQEIVPLLEAAEASG-L-SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 151 ~~~~-~~~~~~~---~srfGi~~~~~~~~~~~~~~~~~~-l-~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
+... .+....+ .||||++ .+++.++++.+++.+ + ++.|||||+|||+.+.+.|.++++++.+++..+++.|.
T Consensus 205 ~~~~~~g~~~~tgG~~SKFGl~--~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~~~~~eL~~~G~ 282 (634)
T PRK05354 205 LASQGSGKWQSSGGEKSKFGLS--ATEVLEAVERLREAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARFYVELRKLGA 282 (634)
T ss_pred cCCCCCCCcccCCCCCCCCCCC--HHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8542 2322233 2899999 999999999998875 4 69999999999999999999999999988888888898
Q ss_pred CCCcEEeecCCCCcCCCCC---------CCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEE
Q 015304 225 NKMRVLDIGGGFSFTNSNT---------KSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGK 295 (409)
Q Consensus 225 ~~~~~ldiGGG~~~~~~~~---------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~ 295 (409)
++++||+||||+++|... +++++|++.|...+++++...+.+ .++|++|||||+|+++++|+|+|+++
T Consensus 283 -~l~~LDIGGGlgV~Y~g~~~~~~~s~nydl~eya~~Iv~~l~~~~~~~~v~--~p~Ii~EpGRalVA~agvLvt~V~~v 359 (634)
T PRK05354 283 -PIQYLDVGGGLGVDYDGTRSQSDSSVNYSLQEYANDVVYTLKEICEEHGVP--HPTIISESGRALTAHHAVLVFNVLGV 359 (634)
T ss_pred -CCCEEEeCCCcCcCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCC--CCEEEECCCchhhhcceEEEEEEEEE
Confidence 899999999999998532 479999999999999998654333 45699999999999999999999999
Q ss_pred EEeCCe--------------------------------------------------------------------------
Q 015304 296 RVHGEM-------------------------------------------------------------------------- 301 (409)
Q Consensus 296 k~~g~~-------------------------------------------------------------------------- 301 (409)
|...+.
T Consensus 360 K~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~ 439 (634)
T PRK05354 360 ESQEYEEPPAPAEDAPPLLQNLWETYQEISERNLQEIYHDAQQDLEEALTLFALGYLSLQERAWAEQLYWAICRKIQKLL 439 (634)
T ss_pred EecCCCCCCCCcccccHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 973210
Q ss_pred ------------------eEEEEeCCcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCcccc-
Q 015304 302 ------------------RNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFS- 362 (409)
Q Consensus 302 ------------------~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~- 362 (409)
.+|++|-++..++...|==++.++..|+.+.. +.+...+.|++-||+|.+.+-.
T Consensus 440 ~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pi~rl~-------e~p~~~~~l~DiTCDSDg~i~~f 512 (634)
T PRK05354 440 DPKNRHPPELDELQERLADKYYVNFSLFQSLPDAWAIDQLFPIMPLHRLD-------EEPTRRAVLADITCDSDGKIDQF 512 (634)
T ss_pred cccccCcHHHHHHHHHhhhheEEeeehhccccchhhhCCccceeeccccC-------CCcceeeEEecccccCCCchhcc
Confidence 14555544433332221113444445666532 3367889999999999986644
Q ss_pred --------CCCCCCCCCCC--EEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 363 --------GHKLPELEVTD--WLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 363 --------~~~lp~l~~GD--~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
.++||++++|+ +|.|+.+|||+..++..+|.|..|.+|-.
T Consensus 513 i~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v 562 (634)
T PRK05354 513 IDGQGIKTTLPLHELDPGEPYYLGFFLVGAYQEILGDMHNLFGDTNAVHV 562 (634)
T ss_pred cCCcCCcCceeCCccCCCCccEEEEEecchhhHhhccccccCCCCCEEEE
Confidence 24566888887 89999999999999999999988866543
No 22
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=100.00 E-value=2.1e-50 Score=413.89 Aligned_cols=374 Identities=21% Similarity=0.315 Sum_probs=298.0
Q ss_pred cccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CcceEEecCcCCcHHHHHHHHHcC---
Q 015304 12 KEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLP----------MIHPHYAVKCNPEPALLEALAALG--- 78 (409)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKan~~~~vl~~l~~~G--- 78 (409)
.-++.++|++... +.++| |+||+|++.|++|+++++++|+ +++++||+|||+++.|++.+.+.|
T Consensus 40 ~i~l~~~v~~~~~--~g~~t-Pl~V~d~~iL~~~i~~l~~aF~~a~~~~~Y~g~~~~~YavKaN~~~~Vl~~l~~~G~~~ 116 (624)
T TIGR01273 40 SIDLLELVDQVRA--RGLQL-PLLVRFPDILQHRIRSLNDAFANAIEEYQYAGHYQGVYPIKVNQHRSVVEDIVAFGKGL 116 (624)
T ss_pred CcCHHHHHHHHHh--cCCCC-CEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCeeEEEEeccCCcHHHHHHHHHcCCCC
Confidence 3678888888765 48999 9999999999999999999986 367999999999999999999999
Q ss_pred -CcEEEcCHHHHHHHHhCCCCC-CcEEEeCCCCCHHHHHHHHH---c--CCcEEEecCHHHHHHHHhHCC----CCeEEE
Q 015304 79 -SNFDCASRSEIEAVLALGVSP-DRIIYANPCKPVSHIKYAAN---V--GVNLTTFDSVEELHKIRKWHP----KCDLLI 147 (409)
Q Consensus 79 -~g~~vaS~~E~~~a~~~G~~~-~~Ii~~gp~k~~~~i~~a~~---~--gv~~~~vds~~el~~i~~~~~----~~~v~l 147 (409)
+|+||+|.+|+.+|+++|+++ ..|+++| .|+.++|+.|+. . ++ ++++||++||++|.+.++ +..++|
T Consensus 117 ~~GlEv~S~~EL~~Al~~g~~p~~~Ii~NG-~K~~e~I~~Al~~~~lG~~v-~IvIDs~~EL~~I~~~a~~~~~~~~Igl 194 (624)
T TIGR01273 117 NYGLEAGSKPELLAAMAYATKPGAPIVCNG-YKDREYIELALIGRKLGHNV-FIVIEKLSELDLVIEEAKKLGVKPKLGL 194 (624)
T ss_pred ceEEEECCHHHHHHHHHcCCCCCCEEEeCC-CCCHHHHHHHHHhhhcCCCe-EEEECCHHHHHHHHHHHHhcCCCceEEE
Confidence 899999999999999999854 5677777 699999999974 3 55 579999999999998764 468999
Q ss_pred EEecCCC-CCCCCCC---CCCcCCCCCcccHHHHHHHHHHcC-C-eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015304 148 RIKPPDD-SGAKHPL---DSKYGVDHHPQEIVPLLEAAEASG-L-SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAAR 221 (409)
Q Consensus 148 Rv~~~~~-~~~~~~~---~srfGi~~~~~~~~~~~~~~~~~~-l-~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~ 221 (409)
||++... .+....+ .+|||++ .+++.++++.+++.+ + .+.|||||+|||+.+.+.|.++++.+.+++..+++
T Consensus 195 Rvnl~~~~~g~~~~tgg~~SKFGl~--~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~eL~~ 272 (624)
T TIGR01273 195 RARLASKGSGKWASSGGEKSKFGLS--ATQILEVVRLLEQNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCELRK 272 (624)
T ss_pred EEecCCCCCCCcccCCCCCCCCCCC--HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9998532 2222223 2899999 999999999998865 4 59999999999999999999999999999888888
Q ss_pred cCCCCCcEEeecCCCCcCCCC---------CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEE
Q 015304 222 LGNNKMRVLDIGGGFSFTNSN---------TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQI 292 (409)
Q Consensus 222 ~g~~~~~~ldiGGG~~~~~~~---------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V 292 (409)
.|. ++++||+||||+++|.. .+++++|++.|...+++++...+. |+++|++|||||+++++++|+|+|
T Consensus 273 ~G~-~l~~LDIGGGlgV~Y~g~~~~~~~s~~y~leeya~~Iv~~l~~~~~~~~~--~~p~Ii~EpGR~lvA~agvLVt~V 349 (624)
T TIGR01273 273 LGA-KITYVDVGGGLGVDYDGTSSSSDCSVNYGLEEYAADVVQALREICDEKGV--PHPVIITESGRAITAHHAVLITNV 349 (624)
T ss_pred cCC-CCCEEEeCCCcCCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCC--CCCEEEEcCCCchhccceEEEEEE
Confidence 898 99999999999999862 258999999999999999865443 345699999999999999999999
Q ss_pred EEEEEeCCe-----------------------------------------------------------------------
Q 015304 293 IGKRVHGEM----------------------------------------------------------------------- 301 (409)
Q Consensus 293 ~~~k~~g~~----------------------------------------------------------------------- 301 (409)
+++|.....
T Consensus 350 ~~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~G~l~l~~ra~~e~l~~~~~~~~~ 429 (624)
T TIGR01273 350 LGVERHEYDPDPKIKEDTPPLVRTLRELYGSIDRRSAIEILHDAQHLKEEAVEGFKLGYLDLEQRAWAEQLYLSICRKVH 429 (624)
T ss_pred EEEeccCCCCCCCCcccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999963210
Q ss_pred ---------------------eEEEEeCCcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCcc
Q 015304 302 ---------------------RNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEV 360 (409)
Q Consensus 302 ---------------------~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l 360 (409)
.+|++|=++..++...|==++.++..|+.+.. +.+...+.|++-||+|.+.+
T Consensus 430 ~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~fqslPD~Wai~Q~Fpi~Pl~rl~-------e~p~~~~~l~DiTCDSDg~i 502 (624)
T TIGR01273 430 QLSAKNKDHRPILDELQERLADKYFVNFSVFQSLPDAWGIDQLFPIMPLSRLD-------EKPTRRAVLQDITCDSDGKI 502 (624)
T ss_pred HHHhccccCchHHHHHHHhhhhheEEehhhhccccchhhhCCccceecCCCCC-------CCccceEEEeccCCCCCCch
Confidence 03344433322222111113344445565532 33678899999999999844
Q ss_pred cc-----C----CCCCCCCCCC--EEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 361 FS-----G----HKLPELEVTD--WLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 361 ~~-----~----~~lp~l~~GD--~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
-. + ++|+++++|+ +|.|+.+|||+..++.-+|.|..|.+|-.
T Consensus 503 ~~fi~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v 555 (624)
T TIGR01273 503 DQFIGEQGITSTLPLHELDPDEGYFLGFFLVGAYQEILGDMHNLFGDTSAVRV 555 (624)
T ss_pred hccCCCcCccCCccCCCcCCCCCcEEEEEeccHhHHHhccccccCCCCCEEEE
Confidence 32 1 3455776665 79999999999999999999988866543
No 23
>PLN02439 arginine decarboxylase
Probab=100.00 E-value=2.2e-47 Score=387.16 Aligned_cols=354 Identities=23% Similarity=0.302 Sum_probs=283.0
Q ss_pred EEeHHHHHHHHHHHHHhCC----------CcceEEecCcCCcHHHHHHHHHcC----CcEEEcCHHHHHHHHhCC--CCC
Q 015304 36 ILDLGVVVTLYNQMISKLP----------MIHPHYAVKCNPEPALLEALAALG----SNFDCASRSEIEAVLALG--VSP 99 (409)
Q Consensus 36 v~d~~~l~~n~~~~~~~~~----------~~~i~yavKan~~~~vl~~l~~~G----~g~~vaS~~E~~~a~~~G--~~~ 99 (409)
+=..+.|++|+++++++|+ +++++||+|||+++.|++.+.+.| +|+||+|.+|+.+|+++| +++
T Consensus 3 ~rf~d~l~~ri~~L~~aF~~ai~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~~ 82 (559)
T PLN02439 3 VRFPDVLKNRLESLQSAFDYAIQSQGYNSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSP 82 (559)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCCC
Confidence 4467899999999999884 468899999999999999999988 699999999999999997 556
Q ss_pred CcEEEeCCCCCHHHHHHHHH---cCCc-EEEecCHHHHHHHHhHCC----CCeEEEEEecCCC-CCCCCCC---CCCcCC
Q 015304 100 DRIIYANPCKPVSHIKYAAN---VGVN-LTTFDSVEELHKIRKWHP----KCDLLIRIKPPDD-SGAKHPL---DSKYGV 167 (409)
Q Consensus 100 ~~Ii~~gp~k~~~~i~~a~~---~gv~-~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~-~~~~~~~---~srfGi 167 (409)
+++++.++.|+.++|+.|+. .|+. ++++||++||++|.+.++ +..++|||++... .+....+ .+|||+
T Consensus 83 ~~ii~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~~~~~~~~~~~tgg~~sKFGl 162 (559)
T PLN02439 83 DAFLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKFGL 162 (559)
T ss_pred CeEEECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEecCCCCCCCccccCCCCCCCCC
Confidence 78888777899999998864 3564 479999999999988753 3689999998543 2222223 389999
Q ss_pred CCCcccHHHHHHHHHHcC-Ce-EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCC--
Q 015304 168 DHHPQEIVPLLEAAEASG-LS-VVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNT-- 243 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~-l~-l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~-- 243 (409)
+ .+++.++++.+++.+ +. +.|||||+||++.+.+.|.++++++.+++..+++.|. ++++||+||||+++|...
T Consensus 163 ~--~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~~G~-~l~~lDIGGGlgV~Y~g~~~ 239 (559)
T PLN02439 163 T--ATEIVRVVRKLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVRLGA-PMRVIDIGGGLGIDYDGSKS 239 (559)
T ss_pred C--HHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCcEEEecCCccccCCCccc
Confidence 9 999999999998865 65 9999999999999999999999999998888888898 999999999999998532
Q ss_pred --------CCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEE------------------
Q 015304 244 --------KSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRV------------------ 297 (409)
Q Consensus 244 --------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~------------------ 297 (409)
+++++|++.|...++++|...+. |.++|++|||||+|+++++|+++|+++|.
T Consensus 240 ~~~~~s~~ydl~eya~~Vv~~l~~~~~~~g~--~~p~Ii~EpGR~lVA~agvLvt~V~~~~~~~~~~~~~~~~~~~~~l~ 317 (559)
T PLN02439 240 GSSDMSVAYSLEEYANAVVAAVRDVCDRKGV--KHPVICSESGRALVSHHSVLIFEAVSASKRGVPAADDDDQYLLLGLT 317 (559)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhcCC--CCCEEEECCCcchhhcceEEEEEEEEeecCCCCCCCccccHHHHHHH
Confidence 47999999999999999865433 34569999999999999999999999982
Q ss_pred ---------e------------------------------------------------------CCeeEEEEeCCcCCCc
Q 015304 298 ---------H------------------------------------------------------GEMRNYWINDGKYGSF 314 (409)
Q Consensus 298 ---------~------------------------------------------------------g~~~~~~i~~g~~~~~ 314 (409)
. .+..+|++|-++..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~y~~NfS~fqsl 397 (559)
T PLN02439 318 EELRADYENLYAAADRGDYEECLLYADQLKQECVRLFKEGLLSLEQRAAVDGLCELVSKRVGASDPVATYHINLSVFTSI 397 (559)
T ss_pred HHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCChheEEEEeeehhccC
Confidence 0 0112677765554444
Q ss_pred cccccccccccccccccccccccCCCCCCceeEEEEccccCCCCccccC----CCCC--CCCC--CC--EEEEcCCCccc
Q 015304 315 DWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSG----HKLP--ELEV--TD--WLVFSEMGAYT 384 (409)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~----~~lp--~l~~--GD--~l~~~~~GAY~ 384 (409)
...|==++.++..|+.+.. +.+...+.|++-||+|.+.+-.- ..|| ++++ |+ +|.|+.+|||+
T Consensus 398 PD~Wai~Q~Fpi~Pl~rl~-------e~p~~~~~l~diTCDsDg~i~~~~~~~~~lplh~~~~~~~e~y~lg~Fl~GAYQ 470 (559)
T PLN02439 398 PDFWAIGQLFPIVPLHRLD-------ERPTVRGILSDLTCDSDGKIDKFIGGEGSLPLHELEKNGGGPYYLGMFLGGAYQ 470 (559)
T ss_pred ccceeeCceeeeeeccccC-------CCcceeEEEeccccCCCCchhcccCCCCCCCCCCCCCCCCCCCEEEEEeccHhH
Confidence 3222223455555676643 33678899999999999986542 2244 6656 44 68899999999
Q ss_pred cccCCCCCCCCCCcEEE
Q 015304 385 RARGTNFNGYNTAAIPT 401 (409)
Q Consensus 385 ~s~~~~fn~~~~p~~v~ 401 (409)
..++.-+|.|+.|.+|-
T Consensus 471 e~lg~~HnLfg~~~~v~ 487 (559)
T PLN02439 471 EALGSLHNLFGGPSVVR 487 (559)
T ss_pred HHhccccccCCCCCEEE
Confidence 99999999999996654
No 24
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=100.00 E-value=8.4e-47 Score=353.40 Aligned_cols=241 Identities=36% Similarity=0.577 Sum_probs=206.4
Q ss_pred eHHHHHHHHHHHH-HhCCC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHH
Q 015304 38 DLGVVVTLYNQMI-SKLPM-IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIK 115 (409)
Q Consensus 38 d~~~l~~n~~~~~-~~~~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~ 115 (409)
|++.+.++++++. +.+|. ++++||+|||+++.|++.|.+.|+|+||+|.+|++.|+++|++|++|+|+||.|+.++|+
T Consensus 1 d~~~~~~~~~~~~~~~~~~~~~i~yA~KaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~g~~~~~Ii~~gp~k~~~~l~ 80 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAFLPYNVKIFYAVKANPNPAVLKILAEEGCGFDVASPGELELALKAGFPPDRIIFTGPGKSDEELE 80 (251)
T ss_dssp EHHHHHHHHHHHHHHHTTT-EEEEEEGGGS--HHHHHHHHHTTCEEEESSHHHHHHHHHTTTTGGGEEEECSS--HHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEEECcCCCHHHHHHHHHcCCceEEecccchHHHHhhhccccceeEecCcccHHHHH
Confidence 6787777776655 45575 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCC--CCCCCCCC---CCcCCCCCccc-HHHHHHHHHHcCCeEE
Q 015304 116 YAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDD--SGAKHPLD---SKYGVDHHPQE-IVPLLEAAEASGLSVV 189 (409)
Q Consensus 116 ~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~--~~~~~~~~---srfGi~~~~~~-~~~~~~~~~~~~l~l~ 189 (409)
.|++.|+..+++||++||++|.+++++.+++|||||+.+ .+..+.++ ||||++ .++ +.++++.++..++++.
T Consensus 81 ~a~~~~~~~i~vDs~~el~~l~~~~~~~~v~lRin~~~~~~~~~~~~~g~~~skFGi~--~~~~~~~~l~~~~~~~l~l~ 158 (251)
T PF02784_consen 81 EAIENGVATINVDSLEELERLAELAPEARVGLRINPGIGAGSHPKISTGGKDSKFGID--IEEEAEEALERAKELGLRLV 158 (251)
T ss_dssp HHHHHTESEEEESSHHHHHHHHHHHCTHEEEEEBE-SESTTTSCHHCSSSHTSSSSBE--GGGHHHHHHHHHHHTTEEEE
T ss_pred HHHhCCceEEEeCCHHHHHHHhccCCCceeeEEEeeccccccccccCCCCCCCcCCcC--hHHHHHHHHHhhccceEEEE
Confidence 999988777899999999999999888899999999632 23334443 799999 888 9999999988889999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCC-CcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 015304 190 GVAFHIGSAATKFAAYRGAIAAAKAVFETAA-RLGNNK-MRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLP 267 (409)
Q Consensus 190 Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~-~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 267 (409)
|||+|+||+..+.+.|.++++.+.++++.++ ++|+ + +++||+||||+++|...++++.+++.+++.+++++...
T Consensus 159 GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~l~~idiGGG~~~~y~~~~~~~~~~~~i~~~~~~~~~~~--- 234 (251)
T PF02784_consen 159 GLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGF-EDLEFIDIGGGFGVPYDDEYDLEEYAEVIREALKEYFEEG--- 234 (251)
T ss_dssp EEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTT-TT-SEEEEESSB-SSSSSSSCHHHHHHHHHHHHHHHHCHT---
T ss_pred EeeeeeccCCcchHHHHHHHHHHHHHHhhhcccccc-ccccEEEeeCCCCCCCcccccchhHHHHHHHHHHHHHhcc---
Confidence 9999999999999999999999988888766 8898 6 99999999999999888899999999999999998641
Q ss_pred CCCcEEEEcCCceeeec
Q 015304 268 GSSLRVISEPGRFFTYS 284 (409)
Q Consensus 268 ~~~~~l~~EpGR~lv~~ 284 (409)
.+.++|++|||||+|++
T Consensus 235 ~~~~~l~~EpGR~lva~ 251 (251)
T PF02784_consen 235 LPGPKLIIEPGRYLVAN 251 (251)
T ss_dssp CTTSEEEEEESHHHHGG
T ss_pred CCCCEEEEeeCHHHhCC
Confidence 24688999999999874
No 25
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=100.00 E-value=2.3e-36 Score=298.22 Aligned_cols=312 Identities=18% Similarity=0.205 Sum_probs=249.3
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.++++|+++|++|++.+++.++ +++++|++|||+ ++.|++.+.++|+ +|+|+|.+|+..++++|+++ ++++.+
T Consensus 2 ~~l~Id~~~i~~N~~~l~~~~~~~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~-~i~~~~ 80 (367)
T cd00430 2 TWAEIDLDALRHNLRVIRRLLGPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITA-PILVLG 80 (367)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCC-CEEEEe
Confidence 5788999999999999999997 689999999998 6999999999998 89999999999999999975 455555
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAE 182 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~ 182 (409)
+. ..++++.++++++. +++||+++++.|.+.+ .+.+|.|||+++ .+|||++ ++++.++++.+.
T Consensus 81 ~~-~~~~~~~~~~~~i~-~~vds~~~l~~l~~~a~~~~~~~~v~l~vdtG---------~~R~G~~--~~e~~~~~~~i~ 147 (367)
T cd00430 81 GT-PPEEAEEAIEYDLT-PTVSSLEQAEALSAAAARLGKTLKVHLKIDTG---------MGRLGFR--PEEAEELLEALK 147 (367)
T ss_pred CC-CHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEEcCC---------CCCCCCC--HHHHHHHHHHHH
Confidence 54 37899999999994 8999999999998765 346799999863 3899999 889999999887
Q ss_pred H-cCCeEEEEEEeeCCCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhh
Q 015304 183 A-SGLSVVGVAFHIGSAATK-FAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAY 260 (409)
Q Consensus 183 ~-~~l~l~Glh~H~gs~~~~-~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~ 260 (409)
. .++++.|||+|++++..+ .+.+.++++++.++.+.+++.|+ .+.++++||+.++.+..+.. .+.+|.+...|
T Consensus 148 ~~~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~-~~~~v~~g~s~~~~~~~~~~----~d~vR~G~~ly 222 (367)
T cd00430 148 ALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGI-PPPLKHLANSAAILRFPEAH----FDMVRPGIALY 222 (367)
T ss_pred hCCCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhcCC-CCCcEEccCCHHHhCCcccc----CCeEeeCeEEE
Confidence 7 589999999999998765 46677888999888887777787 88899999999887653222 24566666655
Q ss_pred CCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccccc
Q 015304 261 FPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASS 334 (409)
Q Consensus 261 ~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 334 (409)
... |.... +......++++++++|+++|.. |+ +.+|..+.+++.+..+++|.+++|+ .+.+...
T Consensus 223 G~~-----~~~~~---~~~~~l~~a~~l~a~Vi~vk~~~~G~~vgyg~~~~~~~~~~~a~~~~Gy~dg~~~--~~~~~~~ 292 (367)
T cd00430 223 GLY-----PSPEV---KSPLGLKPVMSLKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGYPR--ALSNKGE 292 (367)
T ss_pred CcC-----CCccc---ccccCCceeeEEEEEEEEEEEcCCCCcCCCCCeEEcCCCcEEEEEeeccccCcCc--ccCCCcE
Confidence 321 11111 1223577999999999999983 22 3467777778888899999999876 2332111
Q ss_pred cccCCCCCCceeEEEEccccCCCCccccCC-CCCCCCCCCEEEEcCC
Q 015304 335 LTTSKGLSRTYNSKVFGPTCDAADEVFSGH-KLPELEVTDWLVFSEM 380 (409)
Q Consensus 335 ~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~~~~~ 380 (409)
+. ..+++++|+|++|| |+++.++ .+|++++||.|+|++.
T Consensus 293 -v~----i~~~~~~ivG~v~m--D~~~vdv~~~~~~~~GD~v~l~g~ 332 (367)
T cd00430 293 -VL----IRGKRAPIVGRVCM--DQTMVDVTDIPDVKVGDEVVLFGR 332 (367)
T ss_pred -EE----ECCEEcceeceeec--cEEEEECCCCCCCCCCCEEEEEcC
Confidence 11 14688999999998 9999999 5789999999999986
No 26
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=100.00 E-value=1.9e-33 Score=277.24 Aligned_cols=313 Identities=16% Similarity=0.184 Sum_probs=242.1
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+++||+++|++|++.+++.++ +.+++|++|||+ ++.+++.+.+.|+ +|+|+|.+|+..++++|++++ |++.+
T Consensus 3 ~~~~Idl~~l~~N~~~i~~~~~~~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~-ilvl~ 81 (367)
T TIGR00492 3 ATVEIDLAALKHNLSAIRNHIGPKSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITAP-ILLLG 81 (367)
T ss_pred EEEEEEHHHHHHHHHHHHHhcCCCCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCC-EEEEe
Confidence 4688999999999999999887 578999999998 6999999999998 999999999999999999764 55555
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAE 182 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~ 182 (409)
+.. +++++.++++++ .+++||+++++.+.+.+ +..+|.|||+++ .+|||+. ++++.++++.+.
T Consensus 82 ~~~-~~~~~~~~~~~l-~~~v~s~~~l~~l~~~a~~~~~~~~V~l~VdtG---------m~R~Gi~--~~e~~~~~~~i~ 148 (367)
T TIGR00492 82 GFF-AEDLKILAAWDL-TTTVHSVEQLQALEEALLKEPKRLKVHLKIDTG---------MNRLGVK--PDEAALFVQKLR 148 (367)
T ss_pred CCC-HHHHHHHHHcCC-EEEECCHHHHHHHHHHHHHcCCceEEEEEeeCC---------CCCCCCC--hHHHHHHHHHHH
Confidence 543 789999999999 48999999999998764 236799999863 3999999 888888888776
Q ss_pred H-cCCe-EEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHh
Q 015304 183 A-SGLS-VVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHA 259 (409)
Q Consensus 183 ~-~~l~-l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~ 259 (409)
. ++++ +.|+|+|+++... +.+.+.++++++.++.+.+++.|+ .+.++++|+.-+.....+.. .+++|.++..
T Consensus 149 ~~~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~-~~~~~~~~nS~~~~~~~~~~----~d~vR~G~~l 223 (367)
T TIGR00492 149 QLKKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNI-EPPFRHIANSAAILNWPESH----FDMVRPGIIL 223 (367)
T ss_pred hCCCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCC-CCCcEEccCCHHHhCCcccc----CCeEccCeEE
Confidence 6 5899 9999999998753 334677888899888887776677 77889877754443222111 3567777755
Q ss_pred hCCCCCCCCCCcEEEEcCC-ceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccc
Q 015304 260 YFPNELLPGSSLRVISEPG-RFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLA 332 (409)
Q Consensus 260 ~~~~~~~~~~~~~l~~EpG-R~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~ 332 (409)
|. .. |.+. . +.+ ..-..+++++.++|+.+|.. |+ +..|.....+..++.+++|.|+.++ .+++.
T Consensus 224 yG-~~--~~~~--~--~~~~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~~GYaDG~~r--~~s~~ 294 (367)
T TIGR00492 224 YG-LY--PSAD--M--SDGAPFGLKPVLSLTSKIIQVRTVKKGEPVSYGGTFTAEEDTRIGVVAIGYADGYPR--ALSNG 294 (367)
T ss_pred EC-CC--cCcc--c--ccccCCCCeeeEEEEEEEEEEEEcCCcCCcCCCCcEEcCCCcEEEEEeeecccCcCc--ccCCC
Confidence 53 21 1111 0 101 12478999999999999984 33 3467777677788889999999876 45443
Q ss_pred cccccCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCC
Q 015304 333 SSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEM 380 (409)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 380 (409)
.. +. ..++.++|+|++|| |+++.|++ .|++++||.+++++.
T Consensus 295 ~~-v~----i~g~~~~i~G~i~M--D~~~vdv~~~~~~~~Gd~v~l~g~ 336 (367)
T TIGR00492 295 TP-VL----VNGKRVPIVGRVCM--DMIMVDLGPDLQDKTGDEVILWGE 336 (367)
T ss_pred cE-EE----ECCEEeeeeeEEec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 22 21 14689999999999 99999985 678999999999874
No 27
>PRK00053 alr alanine racemase; Reviewed
Probab=100.00 E-value=4.1e-32 Score=267.27 Aligned_cols=313 Identities=16% Similarity=0.154 Sum_probs=245.2
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++++||+++|++|++.+++.++ +++++|++|||+ ++.+++.+.+.|+ +|+|+|++|+..++++|++ .+|++.+
T Consensus 4 ~~l~Idl~~l~~N~~~i~~~~~~~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~-~~il~l~ 82 (363)
T PRK00053 4 ATAEIDLDALRHNLRQIRKHAPPKSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGIT-APILILG 82 (363)
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCC-CCEEEEe
Confidence 7899999999999999999987 588999999987 6899999999998 9999999999999999996 4788888
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH--CCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKW--HPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA- 183 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~--~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~- 183 (409)
+....++++.++++++. +++||+++++.|.+. .+..++.|||+++ .+|||+. ++++.++++.++.
T Consensus 83 ~~~~~~e~~~~~~~~i~-~~v~s~~~l~~l~~~~~~~~~~V~l~vdtG---------~~R~Gi~--~~e~~~~~~~i~~~ 150 (363)
T PRK00053 83 GFFPAEDLPLIIAYNLT-TAVHSLEQLEALEKAELGKPLKVHLKIDTG---------MHRLGVR--PEEAEAALERLLAC 150 (363)
T ss_pred CCCCHHHHHHHHHcCCE-EEECCHHHHHHHHHhccCCCeEEEEEecCC---------CCcCCCC--HHHHHHHHHHHHhC
Confidence 76688899999999994 899999999999874 2246789999863 3899999 8889999988876
Q ss_pred cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCC
Q 015304 184 SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFP 262 (409)
Q Consensus 184 ~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~ 262 (409)
+++++.|||+|+++... +.+.+.+|++++.++.+.+++.|+ .++++|+..+.....+.. .+++|.++..|..
T Consensus 151 ~~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~---~~~h~~nS~~~~~~~~~~----~d~vRpG~~lyG~ 223 (363)
T PRK00053 151 PNVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPGKGK---PLRHLANSAAILRWPDLH----FDWVRPGIALYGL 223 (363)
T ss_pred CCCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhcCC---ceEeccCCHHHhCCCccc----CceEccCeeeeCC
Confidence 58999999999998753 444567888888888877766554 467888876654332222 3567888877642
Q ss_pred CCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccccccc
Q 015304 263 NELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLT 336 (409)
Q Consensus 263 ~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (409)
. |.... .....-..+++++.|+|+.+|.. |+ +..|.....+..++.+++|.|++++ .+++... +
T Consensus 224 ~-----p~~~~--~~~~~~l~pa~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGy~DG~~r--~~s~~~~-v 293 (363)
T PRK00053 224 S-----PSGEP--LGLDFGLKPAMTLKSSLIAVRELKAGEGVGYGGTFTAERDTRIAVVPIGYADGYPR--NLPSGTP-V 293 (363)
T ss_pred C-----CCccc--cccccCCeeeEEEEEEEEEEEEcCCcCccCcCCeEEcCCCcEEEEEEecccccccc--ccCCCCE-E
Confidence 1 21000 01112478999999999999974 33 3467677667778889999999876 3443221 2
Q ss_pred cCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCCC
Q 015304 337 TSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEMG 381 (409)
Q Consensus 337 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~G 381 (409)
. .++++++++|++|| |+++.|++ .|++++||.+.+++..
T Consensus 294 ~----i~g~~~~i~G~i~M--D~~~vdv~~~~~~~~Gd~v~l~g~~ 333 (363)
T PRK00053 294 L----VNGRRVPIVGRVSM--DQLTVDLGPDPQDKVGDEVTLWGEA 333 (363)
T ss_pred E----ECCEEceeeceeec--ceEEEeCCCCCCCCCCCEEEEECCC
Confidence 1 15689999999999 99999985 5789999999998763
No 28
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=1.3e-31 Score=261.64 Aligned_cols=307 Identities=14% Similarity=0.113 Sum_probs=234.5
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCC----cHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNP----EPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPC 108 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~----~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~ 108 (409)
.+.++|+++|++|++.+++.+++.++++++|||+ ++.+++.+.+ ..+|+|+|.+|+..++++|++++.+++.+|.
T Consensus 2 ~~~~Idl~~l~~N~~~l~~~~~~~~l~~vvKanaYGhG~~~ia~~l~~-~~~f~Vas~~Ea~~lr~~G~~~~ilvl~~~~ 80 (354)
T cd06827 2 ARATIDLAALRHNLRLVRELAPNSKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPILLLEGFF 80 (354)
T ss_pred eEEEEEHHHHHHHHHHHHhhCCCCeEEEEEeeccccCCHHHHHHHHHc-CCEEEEccHHHHHHHHhCCCCCCEEEEECCC
Confidence 4678999999999999999998889999999997 7999999988 5599999999999999999987666666775
Q ss_pred CCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC--CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-cC
Q 015304 109 KPVSHIKYAANVGVNLTTFDSVEELHKIRKWH--PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-SG 185 (409)
Q Consensus 109 k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~--~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~~ 185 (409)
. +++++.++++++. ++++|.++++.+.+.+ ++.++.|+|+++ .+|||+. ++++.++++.++. .+
T Consensus 81 ~-~~~~~~~~~~~l~-~~v~s~~~l~~l~~~~~~~~~~v~l~vDtG---------m~R~Gi~--~~e~~~~~~~i~~~~~ 147 (354)
T cd06827 81 S-ADELPLAAEYNLW-TVVHSEEQLEWLEQAALSKPLNVWLKLDSG---------MHRLGFS--PEEYAAAYQRLKASPN 147 (354)
T ss_pred C-HHHHHHHHHcCCE-EEECCHHHHHHHHHhcCCCCeEEEEEeeCC---------cCCCCCC--HHHHHHHHHHHHhCCC
Confidence 4 4889999999995 8999999999998764 346788999863 3999999 8888888888766 68
Q ss_pred CeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 015304 186 LSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNE 264 (409)
Q Consensus 186 l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 264 (409)
+++.|+|+|+++... +......|+++|.++++. . .. ..++++.-+.....+..+ +++|.++..|. ..
T Consensus 148 l~l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~-----~-~~-~~h~~nS~~~~~~~~~~~----d~vR~G~~lyG-~~ 215 (354)
T cd06827 148 VASIVLMTHFACADEPDSPGTAKQLAIFEQATAG-----L-PG-PRSLANSAAILAWPEAHG----DWVRPGIMLYG-AS 215 (354)
T ss_pred ceEEEEEeeccCCCCCCcHHHHHHHHHHHHHHhc-----c-CC-CeeecCCHHHHCCccccC----ceEccCceeeC-CC
Confidence 999999999998764 322335788887776653 2 22 236666554433222222 57888887774 21
Q ss_pred CCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccccccccC
Q 015304 265 LLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTS 338 (409)
Q Consensus 265 ~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (409)
|.++ . +....-..|+++|.++|+.+|.. |+ +.+|.....+..++.+++|.|+.++ .+++... +.
T Consensus 216 --p~~~--~--~~~~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r--~ls~~~~-v~- 285 (354)
T cd06827 216 --PFAD--K--SGADLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGYPR--HAPSGTP-VL- 285 (354)
T ss_pred --CCcc--c--cccCcCCeeeEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeeccccCccc--ccCCCCE-EE-
Confidence 1111 1 01123488999999999999983 33 3567777677888889999999876 4444322 21
Q ss_pred CCCCCceeEEEEccccCCCCccccCC-CCCCCCCCCEEEEcCC
Q 015304 339 KGLSRTYNSKVFGPTCDAADEVFSGH-KLPELEVTDWLVFSEM 380 (409)
Q Consensus 339 ~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~~~~~ 380 (409)
.++++++|+|++|| |+++.|+ ..|+.++||.++|.+.
T Consensus 286 ---i~g~~~pivGri~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 323 (354)
T cd06827 286 ---VNGQRTPLVGRVSM--DMLTVDLTDLPEAKVGDPVELWGK 323 (354)
T ss_pred ---ECCEEeeeeeEEec--cEEEEECCCCCCCCCCCEEEEECC
Confidence 25688999999999 9999998 4678899999999876
No 29
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=2.5e-31 Score=261.34 Aligned_cols=306 Identities=12% Similarity=0.100 Sum_probs=233.9
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+.++|+++|++|++.+++.++ +.++++++|||+ ...|++.+.+.|+ +|+|+|++|+..++++|+++..+++ +
T Consensus 2 ~~l~Idl~al~~N~~~i~~~~~~~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~ilvl-~ 80 (365)
T cd06826 2 AWLEISTGAFENNIKLLKKLLGGNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKILRV-R 80 (365)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCCEEEE-e
Confidence 4688999999999999999987 678999999997 4679999999998 9999999999999999998654444 5
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEec-CCCCCCCCCCCCCcCCCCCccc--HHHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKP-PDDSGAKHPLDSKYGVDHHPQE--IVPLLE 179 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~-~~~~~~~~~~~srfGi~~~~~~--~~~~~~ 179 (409)
+ +++++++.++++++. ++++|+++++.+.+.+ +..++.|||++ + .+|||+. +++ +.++++
T Consensus 81 ~-~~~~e~~~~i~~~i~-~~v~s~~~l~~l~~~a~~~~~~~~v~LkvDt~G---------m~R~Gi~--~~~~~~~~~~~ 147 (365)
T cd06826 81 T-ATPSEIEDALAYNIE-ELIGSLDQAEQIDSLAKRHGKTLPVHLALNSGG---------MSRNGLE--LSTAQGKEDAV 147 (365)
T ss_pred C-CCHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEECCCC---------CCCCCCC--cchhhHHHHHH
Confidence 4 578999999999996 8999999999997654 45678889886 3 3899998 654 455666
Q ss_pred HHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCC-CCcEEeecCCCCcCCCCCCCHHHHHHHHHHH
Q 015304 180 AAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETA-ARLGNN-KMRVLDIGGGFSFTNSNTKSFQEAASIIKEA 256 (409)
Q Consensus 180 ~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~-~~~g~~-~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~ 256 (409)
.+.. .++++.|+++|+++.+. ....+|++++.++++.+ ++.|++ +..++++++..++-...+.. .+++|.+
T Consensus 148 ~~~~~~~l~l~Gi~tH~a~ad~--~~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~~l~~~~~~----~d~vR~G 221 (365)
T cd06826 148 AIATLPNLKIVGIMTHFPVEDE--DDVRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVPEAH----LDMVRPG 221 (365)
T ss_pred HHHHCCCCcEEEEEEeCCCCCc--hHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHHHhcCcccc----CCcCccC
Confidence 6655 58999999999998753 23457788887766644 555541 23478888876653222222 2567888
Q ss_pred HHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccc
Q 015304 257 LHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLT 330 (409)
Q Consensus 257 l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~ 330 (409)
+..|. .. |. ..-..+++++.++|+.+|.. |+ +.+|..+..++.++.+++|.|+.++ .++
T Consensus 222 ~~lyG-~~----p~--------~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r--~ls 286 (365)
T cd06826 222 GILYG-DT----PP--------SPEYKRIMSFKSRVASLNTYPKGSTVGYDRTFTLTRDSLLANIPVGYSDGYRR--SFS 286 (365)
T ss_pred eeeeC-CC----CC--------ccCceeeEEEEEEEEEEEEcCCcCcccCCCeEEcCCCcEEEEEeeecccCcCc--cCC
Confidence 86664 21 21 12478999999999999983 43 3566666667778889999999876 454
Q ss_pred cccccccCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCC
Q 015304 331 LASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEM 380 (409)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 380 (409)
+... +. .+++.++|+|++|| |+++.|++ .|++++||.|++++.
T Consensus 287 ~~~~-v~----i~g~~~pivGrv~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 330 (365)
T cd06826 287 NKAH-VL----INGQRVPVVGKVSM--NTVMVDVTDIPGVKAGDEVVLFGK 330 (365)
T ss_pred CCcE-EE----ECCEEeeeeceeee--ceEEEeCCCCCCCCCCCEEEEECC
Confidence 4322 21 15688999999999 99999984 578899999999876
No 30
>PRK13340 alanine racemase; Reviewed
Probab=100.00 E-value=1.8e-31 Score=265.71 Aligned_cols=307 Identities=14% Similarity=0.129 Sum_probs=231.4
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++.+||+++|++|++.+++.+++ .+++|++|||+ ...|++.+.+.|+ +|+|+|.+|+..++++|+++..+++.+
T Consensus 41 ~~l~Idl~ai~~N~~~i~~~~~~~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~ilvl~~ 120 (406)
T PRK13340 41 AWLEISPGAFRHNIKTLRSLLANKSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQLLRVRS 120 (406)
T ss_pred eEEEEcHHHHHHHHHHHHHhCCCCCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCCEEEECC
Confidence 67889999999999999999974 78999999998 5779999999998 999999999999999999876666666
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEec-CCCCCCCCCCCCCcCCCCCcccHHHHHH--
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKP-PDDSGAKHPLDSKYGVDHHPQEIVPLLE-- 179 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~-~~~~~~~~~~~srfGi~~~~~~~~~~~~-- 179 (409)
+ ++++++.++++++. +++||+++++.|.+.+ +..+|.|||++ + .+|||+. +++..++..
T Consensus 121 ~--~~~el~~~~~~~l~-~~v~s~~~l~~l~~~a~~~~~~~~V~LkVDt~G---------m~R~G~~--~~e~~~~~~~~ 186 (406)
T PRK13340 121 A--SPAEIEQALRYDLE-ELIGDDEQAKLLAAIAKKNGKPIDIHLALNSGG---------MSRNGLD--MSTARGKWEAL 186 (406)
T ss_pred C--CHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEECCCC---------CCCcCCC--hhhhhHHHHHH
Confidence 5 78999999999995 8999999999997764 34578999986 3 3899998 765433333
Q ss_pred HHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCCCc--EEeecCCCCcCCCCCCCHHHHHHHHHH
Q 015304 180 AAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETA-ARLGNNKMR--VLDIGGGFSFTNSNTKSFQEAASIIKE 255 (409)
Q Consensus 180 ~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~~~--~ldiGGG~~~~~~~~~~~~~~~~~i~~ 255 (409)
.+.+ .++++.|+|+|+++.+. ....+|++++.++++.+ ++.++ .+. .+++++..+..... +.-.+++|.
T Consensus 187 ~l~~~~~l~l~Gi~tH~a~ad~--~~~~~q~~~f~~~~~~l~~~~g~-~~~~~~~h~anSa~~~~~~----~~~~d~vR~ 259 (406)
T PRK13340 187 RIATLPSLGIVGIMTHFPNEDE--DEVRWKLAQFKEQTAWLIGEAGL-KREKITLHVANSYATLNVP----EAHLDMVRP 259 (406)
T ss_pred HHHhCCCccEEEEEEECCCCCc--HHHHHHHHHHHHHHHHHHHhcCC-CCCcCeEEecCCHHHHcCc----hhcCCeEee
Confidence 4444 58999999999998543 34557778887777654 34454 333 55666655442111 112345677
Q ss_pred HHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCcccccccccccccccc
Q 015304 256 ALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPL 329 (409)
Q Consensus 256 ~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l 329 (409)
++.-|.... | ...-..+++++.++|+.+|.. |+ +..|.....+..+..+++|.|+.++ .+
T Consensus 260 G~~lyG~~~----p--------~~~~l~pv~~l~a~Vi~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r--~l 325 (406)
T PRK13340 260 GGILYGDRH----P--------ANTEYKRIMTFKSRIASVNTLPKGSTVGYDRTFTLKRDSRLANLPVGYSDGYPR--HA 325 (406)
T ss_pred CeeeeCCCC----C--------CCCCCcccEEEEEEEEEEEEcCCcCccCCCCeEEcCCCcEEEEEeeecccCcCc--cC
Confidence 766553211 1 122478999999999999984 33 3466666667778889999999876 45
Q ss_pred ccccccccCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCCC
Q 015304 330 TLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEMG 381 (409)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~G 381 (409)
++... +. .+++.++|+|++|| |+++.|++ .|++++||.|++++..
T Consensus 326 s~~~~-v~----i~g~~~pivGrv~M--D~~~vdvt~~~~~~~Gd~v~l~g~~ 371 (406)
T PRK13340 326 SNKAP-VL----INGQRAPVVGRVSM--NTLMVDVTDIPNVKPGDEVVLFGKQ 371 (406)
T ss_pred CCCcE-EE----ECCEEeeeeeeeec--ceEEEECCCCCCCCCCCEEEEECCC
Confidence 54322 22 25689999999999 99999984 5788999999998873
No 31
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=99.98 E-value=1.4e-30 Score=252.62 Aligned_cols=276 Identities=23% Similarity=0.347 Sum_probs=225.1
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CcceEEecCcCCcHHHHHHHHHcC----
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLP----------MIHPHYAVKCNPEPALLEALAALG---- 78 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKan~~~~vl~~l~~~G---- 78 (409)
-++.+++++.-. +..+- |+++-..+.|.++++.+..+|. ++...|.+|+|..+.|+..|.+.|
T Consensus 64 ~dL~elV~~l~~--~g~~L-PlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~ 140 (652)
T COG1166 64 VDLAELVKALRD--RGLRL-PLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRVVESLVASGKGYP 140 (652)
T ss_pred ccHHHHHHHHHh--cCCCC-ceEEechHHHHHHHHHHHHHHHHHHHHhCCCCceeEEEEeeecchHHHHHHHHhccCCCC
Confidence 346677666554 57888 9999999999999999987762 478899999999999999999874
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHH---HcCCc-EEEecCHHHHHHHHhHC----CCCeEEEEEe
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAA---NVGVN-LTTFDSVEELHKIRKWH----PKCDLLIRIK 150 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~---~~gv~-~~~vds~~el~~i~~~~----~~~~v~lRv~ 150 (409)
.|+|..|..|+.+++..--.+...|.++..|+++.|+.|+ +.|-+ +++++-++|++.+.+.+ .+.++++|+.
T Consensus 141 ~GLEAGSK~ELm~vLA~~~~~~~~IvCNGyKDrEyI~lAlig~kLGh~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~R 220 (652)
T COG1166 141 LGLEAGSKAELMAVLAHAGNPGSLIVCNGYKDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRAR 220 (652)
T ss_pred CcccCCCHHHHHHHHHhcCCCCCeEEecCcccHHHHHHHHHHHHhCCceEEEEechHHHHHHHHHHHHcCCCCcceeEEE
Confidence 4999999999999998542344555566679999999985 34433 47999999999987654 3567788777
Q ss_pred cCC-CCCCCCCC--C--CCcCCCCCcccHHHHHHHHHHcCC--eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 015304 151 PPD-DSGAKHPL--D--SKYGVDHHPQEIVPLLEAAEASGL--SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLG 223 (409)
Q Consensus 151 ~~~-~~~~~~~~--~--srfGi~~~~~~~~~~~~~~~~~~l--~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g 223 (409)
... ++| +|.. | +|||.+ ..|+.++++++++.+. .+.-+|||+|||+.+......+++.+.+++-.++++|
T Consensus 221 L~sqGsG-kW~~SgG~ksKFGLs--a~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~klG 297 (652)
T COG1166 221 LASQGSG-KWQSSGGEKSKFGLS--ATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRKLG 297 (652)
T ss_pred Eeccccc-ccccccCchhccCCC--HHHHHHHHHHHHhcchHHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 533 222 3322 2 799999 9999999999987652 6777999999999999999999999999998899999
Q ss_pred CCCCcEEeecCCCCcCCCC---------CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEE
Q 015304 224 NNKMRVLDIGGGFSFTNSN---------TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIG 294 (409)
Q Consensus 224 ~~~~~~ldiGGG~~~~~~~---------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~ 294 (409)
. +++++|+|||++++|.. ..++++|++.|--.|++.|...+.| +++++.|.||++++...+|++.|++
T Consensus 298 a-~i~~~dVGGGLgVDYdGt~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p--~P~IisESGRaitAHhaVLI~~Vi~ 374 (652)
T COG1166 298 A-NIKYFDVGGGLGVDYDGTRTQSDCSKNYGLNEYANDVVWALKDACEEKGLP--HPTIISESGRAITAHHAVLIANVIG 374 (652)
T ss_pred C-CceEEeccCceeecccCccccccccccCCHHHHHHHHHHHHHHHHHhcCCC--CCeEEeecchhhhhcceEEEeeecc
Confidence 9 99999999999999842 3578999999988999998776554 4559999999999999999999998
Q ss_pred EEE
Q 015304 295 KRV 297 (409)
Q Consensus 295 ~k~ 297 (409)
+..
T Consensus 375 v~~ 377 (652)
T COG1166 375 VER 377 (652)
T ss_pred ccc
Confidence 765
No 32
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.97 E-value=4.6e-30 Score=252.19 Aligned_cols=314 Identities=16% Similarity=0.177 Sum_probs=240.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+.++|+++|++|++.+++..+ +.+++.++|||+ ..++++.+.++|+ +|.|++++|++.++++|++. +|++.+
T Consensus 2 ~~~~Idl~al~~N~~~i~~~~~~~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~-~Ilvl~ 80 (368)
T cd06825 2 AWLEIDLSALEHNVKEIKRLLPSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKG-EILILG 80 (368)
T ss_pred eEEEEEHHHHHHHHHHHHHhCCCCCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCC-CEEEEc
Confidence 5788999999999999999886 678999999975 7999999999998 99999999999999999864 677666
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-cC
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-SG 185 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~~ 185 (409)
+. .++++..++++++. ++++|.++++.+.+.+...++.|.|+++ .+|+|+. ++++ +.+..+.. ++
T Consensus 81 ~~-~~~~~~~~~~~~l~-~~i~~~~~l~~l~~~~~~~~vhlkvDtG---------m~R~G~~--~~~~-~~~~~~~~~~~ 146 (368)
T cd06825 81 YT-PPVRAKELKKYSLT-QTLISEAYAEELSKYAVNIKVHLKVDTG---------MHRLGES--PEDI-DSILAIYRLKN 146 (368)
T ss_pred CC-CHHHHHHHHHcCCE-EEECCHHHHHHHHhcCCCceEEEEeeCC---------CCCCCCC--HHHH-HHHHHHHhCCC
Confidence 53 46889999999996 7999999999998877667788888763 3899998 7555 44454544 68
Q ss_pred CeEEEEEEeeCCCCC-CH---HHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhC
Q 015304 186 LSVVGVAFHIGSAAT-KF---AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYF 261 (409)
Q Consensus 186 l~l~Glh~H~gs~~~-~~---~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~ 261 (409)
+++.|+++|+++... +. ....+|+++|.++.+.+++.|+ .+.++++|+..++....+. -.+++|.++..|.
T Consensus 147 l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~g~-~~~~~h~~nSa~~l~~~~~----~~d~vR~G~~lYG 221 (368)
T cd06825 147 LKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGI-EVGKIHIQSSYGILNYPDL----KYDYVRPGILLYG 221 (368)
T ss_pred CcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhcCC-CCCcEEeeCCHHHhCCccc----cCCeEccCeEEEC
Confidence 999999999998653 22 2345788899888888877787 7778999888555432222 2356788886663
Q ss_pred CCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCcccccccccccccccccccccc
Q 015304 262 PNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSL 335 (409)
Q Consensus 262 ~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (409)
.. |.+.... +...-..|+++|.++|+.+|.. |+ +..|..+..++.++.+++|.|+.++ .+++.+..
T Consensus 222 -~~--p~~~~~~---~~~~~l~pv~~l~a~v~~vk~~~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r--~ls~~~~~ 293 (368)
T cd06825 222 -VL--SDPNDPT---KLGLDLRPVLSLKAKVILVRKVAKGEAVGYGRLFVASRTTRIATVSIGYADGYPR--SLSNQKAY 293 (368)
T ss_pred -CC--CCCcccc---ccccCceeeEEEEEEEEEEEEcCCCCcCCCCCcEEcCCCcEEEEEeeecccCcCc--ccCCCccE
Confidence 21 1111000 1113478999999999999983 33 3467676667788889999999876 45543211
Q ss_pred ccCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCC
Q 015304 336 TTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEM 380 (409)
Q Consensus 336 ~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 380 (409)
+. ..+++++|+|++|| |+++.|++ .|++++||.++|++.
T Consensus 294 V~----i~g~~~pivGri~M--D~~~vdvt~~~~~~~Gd~v~l~G~ 333 (368)
T cd06825 294 VL----INGKRAPIIGNICM--DQLMVDVTDIPEVKEGDTATLIGQ 333 (368)
T ss_pred EE----ECCEEeeeeeEeec--ceEEEECCCCCCCCCCCEEEEEcC
Confidence 22 25689999999999 99999984 578899999999876
No 33
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.1e-29 Score=243.35 Aligned_cols=307 Identities=17% Similarity=0.189 Sum_probs=238.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
-+..+|+++|++|++.+++..++.+++.+||||+ ...|++.|.++|+ +|.||+++|+..+|++|++..+|+..+.
T Consensus 5 ~~~~Idl~Al~~N~~~i~~~~~~~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~IlvL~g 84 (360)
T COG0787 5 ATAEIDLGALRHNLRALRELAGPAKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPILVLEG 84 (360)
T ss_pred EEEEEeHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCCCEEEEcC
Confidence 3567999999999999999888899999999999 6899999999999 9999999999999999998447887776
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCC---CeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHH-HH
Q 015304 108 CKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPK---CDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAA-EA 183 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~---~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~-~~ 183 (409)
..++++++.+.++++. .+|.|+++++.+.+...+ .++.|+++++ .+|+|+. +++....+..+ +.
T Consensus 85 ~~~~~~~~~~~~~~l~-~~v~s~~ql~~l~~~~~~~~~l~vhLkiDTG---------M~RlG~~--~~e~~~~~~~~~~~ 152 (360)
T COG0787 85 FFPAEELELAAAYNLT-PVVNSLEQLEALKNAALKNKPLKVHLKIDTG---------MNRLGLR--PEEAVALAIDLIAL 152 (360)
T ss_pred cCChhhHHHHHHcCCe-EEECCHHHHHHHHHhhhhcCceEEEEEECCC---------CCcCCCC--hHHHHHHHHHHhhc
Confidence 6677777889999996 799999999999876433 4566666542 3999999 88877766655 44
Q ss_pred cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCC
Q 015304 184 SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFP 262 (409)
Q Consensus 184 ~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~ 262 (409)
.++.+.|+++|+++.+. +......|+++|. ....+. +...+++.++-++-... +..++++|.++..|.-
T Consensus 153 ~~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~-----~~~~~~-~~~~~h~aNSa~~~~~~----~~~~d~vRpGi~lYG~ 222 (360)
T COG0787 153 KNLDLEGIFSHFACADEPEDPYTLKQLERFN-----LAKQGL-PGELSHLANSAGLLLGP----DYHFDMVRPGIALYGL 222 (360)
T ss_pred cCCceEEEEcccCCCCCCCChHHHHHHHHHH-----HHhccC-CCceEEEeccHHHhcCc----ccccceeecceeeecC
Confidence 57779999999998864 3346667888876 233455 66777776654443211 3455889999999853
Q ss_pred CCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccccccc
Q 015304 263 NELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLT 336 (409)
Q Consensus 263 ~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (409)
. |.+... .-..|+++|.++|+++|+. |+ +.+|.....+..+..+++|+|++|+ .+++... +
T Consensus 223 ~---P~~~~~-------~~lkpvmtl~a~ii~vr~v~~Ge~VgYG~t~~a~~~t~iavv~iGYaDG~pR--~~~~~~~-V 289 (360)
T COG0787 223 S---PSGGLD-------NGLKPVMTLKARIIQVRTVPAGETVGYGATFTAERDTRIAVVAIGYADGYPR--ALSNGTP-V 289 (360)
T ss_pred C---cccccC-------CCcceeEEEEEEEEEEEEeCCCCcccCCcEEEccCCceEEEEeccccCCchh--hcCCCCE-E
Confidence 2 222211 4588999999999999984 43 3567777777788889999999987 3443221 2
Q ss_pred cCCCCCCceeEEEEccccCCCCccccCC-CCCCCCCCCEEEEcCC
Q 015304 337 TSKGLSRTYNSKVFGPTCDAADEVFSGH-KLPELEVTDWLVFSEM 380 (409)
Q Consensus 337 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~~~~~ 380 (409)
. ..+++++++|++|| |+++.|+ .+|++++||++.+++-
T Consensus 290 l----i~G~r~pivGrVsM--D~~~Vdl~~~~~~~~Gd~V~L~G~ 328 (360)
T COG0787 290 L----INGKRVPIVGRVSM--DMIMVDLTDLPQVKVGDEVELFGE 328 (360)
T ss_pred E----ECCEEeeEeeEEee--eeEEEECCCCCCCCCCCEEEEECC
Confidence 2 25789999999999 9999998 4778999999999876
No 34
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.97 E-value=4.4e-30 Score=234.03 Aligned_cols=190 Identities=35% Similarity=0.568 Sum_probs=169.9
Q ss_pred HHHHHHHHHHhCC-CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHc
Q 015304 42 VVTLYNQMISKLP-MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANV 120 (409)
Q Consensus 42 l~~n~~~~~~~~~-~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~ 120 (409)
|++|++.+++.++ +++++|++|||+++.+++.+.+++.+|+|+|..|+..++++|+++.+|++.+|.+++++++.++++
T Consensus 1 l~~N~~~i~~~~~~~~~i~~~vKan~~~~i~~~~~~~~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~~~~~ 80 (211)
T cd06808 1 IRHNYRRLREAAPAGITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAEQ 80 (211)
T ss_pred ChHHHHHHHHhCCCCCEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHHc
Confidence 5789999999998 799999999999999999999998899999999999999999988899999999999999999999
Q ss_pred CCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHc-CCeEEEEEEee
Q 015304 121 GVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEAS-GLSVVGVAFHI 195 (409)
Q Consensus 121 gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~-~l~l~Glh~H~ 195 (409)
|...+++||.++++.+.+.+ ++.+++|||+++. ..+|||++ ++++.++++.+++. ++++.|+|+|+
T Consensus 81 ~~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g~-------~~~R~G~~--~~e~~~~~~~i~~~~~l~l~Gl~~H~ 151 (211)
T cd06808 81 GVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGD-------ENGKFGVR--PEELKALLERAKELPHLRLVGLHTHF 151 (211)
T ss_pred CCCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcCCC-------CCCCCCCC--HHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 54458999999999998754 5678999999742 24899999 89999999988775 69999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC
Q 015304 196 GSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS 241 (409)
Q Consensus 196 gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~ 241 (409)
|++..+.+.+.++++++.++++.+++.|+ .+.++|+|||+++.|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~Ggg~~~~~~ 196 (211)
T cd06808 152 GSADEDYSPFVEALSRFVAALDQLGELGI-DLEQLSIGGSFAILYL 196 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEECCCCCcCcC
Confidence 99887777888899999998888888887 8999999999998764
No 35
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.96 E-value=6.3e-28 Score=235.61 Aligned_cols=306 Identities=13% Similarity=0.107 Sum_probs=227.6
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
.+.++|+++|++|++.+++..++.+++.++|||+ ...|++.+.+ + +|.|++++|+..++++|++. +|++.++
T Consensus 4 ~~~~Idl~al~~N~~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~--~~~faVa~l~Ea~~LR~~Gi~~-~Ilvl~~ 80 (355)
T PRK03646 4 IQASLDLQALKQNLSIVREAAPGARVWSVVKANAYGHGIERIWSALGA--TDGFAVLNLEEAITLRERGWKG-PILMLEG 80 (355)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCeEEEEEeeccccCCHHHHHHHHhc--CCEEEEeeHHHHHHHHhcCCCC-CEEEEeC
Confidence 4678999999999999999888889999999975 7899998854 6 99999999999999999974 5666644
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC--CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-c
Q 015304 108 CKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH--PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-S 184 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~--~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~ 184 (409)
...+++++.+.++++. ++++|.++++.+.+.. ++.++.|.|+++ .+|+|+. ++++.++++.++. .
T Consensus 81 ~~~~~~~~~~~~~~l~-~~i~s~~~l~~l~~~~~~~~~~vhLkvDTG---------M~R~G~~--~~e~~~~~~~i~~~~ 148 (355)
T PRK03646 81 FFHAQDLELYDQHRLT-TCVHSNWQLKALQNARLKAPLDIYLKVNSG---------MNRLGFQ--PERVQTVWQQLRAMG 148 (355)
T ss_pred CCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhccCCCeEEEEEeeCC---------CCCCCCC--HHHHHHHHHHHHhCC
Confidence 3467889999999996 8999999999998764 345677777653 3999999 8888888888866 5
Q ss_pred CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 015304 185 GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNE 264 (409)
Q Consensus 185 ~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 264 (409)
++++.|+++|+++... .....+|+++|.++.+ ++ .. .+++++.-++....+. ..+++|.++..|.-.
T Consensus 149 ~l~~~Gi~sH~a~ad~-~~~~~~Q~~~F~~~~~-----~~-~~-~~h~~nSa~~~~~~~~----~~d~vR~Gi~lYG~~- 215 (355)
T PRK03646 149 NVGEMTLMSHFARADH-PDGISEAMARIEQAAE-----GL-EC-ERSLSNSAATLWHPQA----HFDWVRPGIILYGAS- 215 (355)
T ss_pred CCEEEEEEcCCCCCCC-CCHHHHHHHHHHHHHh-----cc-CC-CeeeeCCHHHHCCccc----cCCeeccceeeeCCC-
Confidence 8999999999998753 2235577777766652 33 22 2566665444322221 235688888777421
Q ss_pred CCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccccccccC
Q 015304 265 LLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTS 338 (409)
Q Consensus 265 ~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (409)
|.......+ ..-..|+++|.++|+.+|.. |+ +..|..+..+..++.+++|.|+.++ .+++... +.
T Consensus 216 ----p~~~~~~~~-~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r--~ls~~~~-v~- 286 (355)
T PRK03646 216 ----PSGQWRDIA-NTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARREQRIGIVAAGYADGYPR--HAPTGTP-VL- 286 (355)
T ss_pred ----CCccccccc-ccCceEEEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeeccccccCc--ccCCCCE-EE-
Confidence 211000000 11288999999999999984 33 3466666667788889999999876 4444322 21
Q ss_pred CCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCC
Q 015304 339 KGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEM 380 (409)
Q Consensus 339 ~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 380 (409)
.++++++|+|++|| |+++.|++ .|++++||.+++++.
T Consensus 287 ---i~g~~~pivGrv~M--D~~~vDvt~~~~~~~Gd~V~l~G~ 324 (355)
T PRK03646 287 ---VDGVRTRTVGTVSM--DMLAVDLTPCPQAGIGTPVELWGK 324 (355)
T ss_pred ---ECCEEeeeeeEEec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 15689999999999 99999984 578899999999875
No 36
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.96 E-value=1.5e-28 Score=241.86 Aligned_cols=258 Identities=19% Similarity=0.221 Sum_probs=193.7
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEE
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
+++| |+++||+++|++|++++++.++ +++++|++|+|+++.+++.+.+.|+ +|+|+|++|++.++++|++ +|++
T Consensus 4 ~~~t-P~~~id~~~l~~N~~~l~~~~~~~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~ili 80 (358)
T cd06819 4 EIDT-PALVLDLDALERNIKRMAAFAKAHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIR--DILI 80 (358)
T ss_pred ccCC-ceEEEEHHHHHHHHHHHHHHHHHcCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCC--eEEE
Confidence 6789 9999999999999999999886 6789999999999999999999998 9999999999999999985 5888
Q ss_pred eCCC----CCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHH
Q 015304 105 ANPC----KPVSHIKYAANVGVNLTTFDSVEELHKIRKWHP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVP 176 (409)
Q Consensus 105 ~gp~----k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~ 176 (409)
..|. +..+.++.+.+.++ .+++||.++++.|.+.++ ..+|.|||+++ .+|||+.. .+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i-~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~G---------~~R~Gv~~-~~~~~~ 149 (358)
T cd06819 81 TNEVVGPAKIARLAALARRAPL-IVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVG---------QGRCGVPP-GEAALA 149 (358)
T ss_pred ECCcCCHHHHHHHHHHhcCCCE-EEEECCHHHHHHHHHHHHhcCCceEEEEEECCC---------CCcCCCCC-hHHHHH
Confidence 8444 34455566777887 489999999999987653 46788999863 38999971 356888
Q ss_pred HHHHHHH-cCCeEEEEEEeeCCCC------CCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHH
Q 015304 177 LLEAAEA-SGLSVVGVAFHIGSAA------TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEA 249 (409)
Q Consensus 177 ~~~~~~~-~~l~l~Glh~H~gs~~------~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~ 249 (409)
+++.+.+ +++++.|||+|.|+.. .+...+.++++.+.++.+.+++.|+ .+.+++ |||+++.+..... .-
T Consensus 150 l~~~i~~~~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~vs-gGgs~~~~~~~~~--~~ 225 (358)
T cd06819 150 LARTIAALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGL-PCEIVT-GGGTGTYEFEAAS--GV 225 (358)
T ss_pred HHHHHHhCCCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCEEe-cCCCcChhhhccC--Cc
Confidence 8888866 5899999999888753 2234556777788878887777788 888896 8898886531110 00
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcC
Q 015304 250 ASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKY 311 (409)
Q Consensus 250 ~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~ 311 (409)
...++.+..-+++.. ......|||+....+|++++++|+++.+. ..+++|.|..
T Consensus 226 ~~elr~G~~i~~d~~-----~~~~~~~~~~~~~~~A~~v~a~Vis~~~~---~~~~ld~G~~ 279 (358)
T cd06819 226 YTELQAGSYVFMDAD-----YGDNEDEGGAPPFENALFVLTTVISANAP---GRAVVDAGLK 279 (358)
T ss_pred ceEEccCceEEecHH-----HHhcCCccCCCccceeeEEEEEEeeeccC---CeEEECCccc
Confidence 112333322222110 01122378999999999999999995432 2477888854
No 37
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.95 E-value=2.4e-27 Score=232.23 Aligned_cols=318 Identities=15% Similarity=0.171 Sum_probs=222.5
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcC-CcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeCCC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCN-PEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYANPC 108 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan-~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~ 108 (409)
|+.++|+++|++|++.+++..+ +++++.++||| ..+++++.+.++|+ +|.|++++|+..++++|+.. +|++.|+.
T Consensus 2 P~l~Idl~al~~Ni~~i~~~~~~~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~~-~illlg~~ 80 (353)
T cd06815 2 PRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISG-PKMLLRIP 80 (353)
T ss_pred CeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCCC-CEEEECCC
Confidence 8999999999999999998775 68999999999 67999999999999 99999999999999999864 56666654
Q ss_pred CCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-
Q 015304 109 KPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA- 183 (409)
Q Consensus 109 k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~- 183 (409)
.+++++.+++++.. .+++|+++++.+.+.+ ++.++.|.|+++ .+|+|+. ++++.++++.++.
T Consensus 81 -~~~~~~~~~~~~~~-~~i~s~~~~~~l~~~a~~~~~~~~vhlkvDtG---------m~R~G~~--~~e~~~~~~~i~~~ 147 (353)
T cd06815 81 -MLSEVEDVVKYADI-SLNSELETIKALSEEAKKQGKIHKIILMVDLG---------DLREGVL--PEDLLDFVEEILKL 147 (353)
T ss_pred -CHHHHHHHHhhcce-eccChHHHHHHHHHHHHHcCCccceEEEEecC---------CCccccC--HHHHHHHHHHHhCC
Confidence 46889999998885 6688999999887643 345788888863 3899999 8888888888876
Q ss_pred cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCC
Q 015304 184 SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAAR-LGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFP 262 (409)
Q Consensus 184 ~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~-~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~ 262 (409)
.++++.|+++|+++..... ....+.+++.++.+.+++ .+. .+.++++|+.-+........+...++++|.++.-|.+
T Consensus 148 ~~l~~~Gi~tH~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~S~~~~~~~~~~~~~~~~~vRpG~~l~yG 225 (353)
T cd06815 148 PGIELVGIGTNLGCYGGVL-PTEENMGKLVELKEEIEKEFGI-KLPIISGGNSASLPLLLKGELPGGINQLRIGEAILLG 225 (353)
T ss_pred CCcEEEecccCccccCCCC-CCHHHHHHHHHHHHHHHHhhCC-CCCEEeccchHHHHHHHhcCCcCCCceeEeehhhhcc
Confidence 5899999999998754311 111233444445554444 365 6678898875433211000000123568888876543
Q ss_pred CCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEE-----eCC--------eeEEEEeCCcCCCcccccccccccccccc
Q 015304 263 NELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRV-----HGE--------MRNYWINDGKYGSFDWVNYDEAIAKCTPL 329 (409)
Q Consensus 263 ~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~-----~g~--------~~~~~i~~g~~~~~~~~~~~~~~~~~~~l 329 (409)
.. |.... +-..-..+++++.|+|+.+|. .|+ +..|.....+..+..+++|.++.++ .+
T Consensus 226 ~~----p~~~~---~~~~~l~p~~~l~s~Vi~i~~~~~~~~g~~~yd~~G~~~~~~~~~~~~ia~v~~GyaDG~~r--~l 296 (353)
T cd06815 226 RE----TTYNE---PIPGLYQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDVDPD--GL 296 (353)
T ss_pred cc----ccCCc---cccccccccEEEEEEEEEEecCCCCCCcceeeccCCCCceeecCCceEEEEEecccccCCHH--hC
Confidence 32 21000 001247899999999999996 232 1133332224455667889998765 23
Q ss_pred ccccccccCCCCCCceeEEEEccccCCCCccccCCC-CC-CCCCCCEE-EEcCCCccccccCC
Q 015304 330 TLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LP-ELEVTDWL-VFSEMGAYTRARGT 389 (409)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp-~l~~GD~l-~~~~~GAY~~s~~~ 389 (409)
++ .+..+.++|. || |+++.+++ .| ++++||.| +|++=.+-+..+-+
T Consensus 297 s~-----------~g~~~~ivG~-~m--d~~~vdv~~~~~~~~~Gd~v~l~p~h~~~~~~~~~ 345 (353)
T cd06815 297 TP-----------VDNGIEILGA-SS--DHLILDITDSDRDYKVGDEIRFNLDYGALLRAMTS 345 (353)
T ss_pred cc-----------CCCCCeEEec-CC--ceEEEEccCCCCCCCCCCEEEEEeCHHHHHHHhcC
Confidence 22 1346899998 99 99998884 45 78999987 55554444444433
No 38
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.95 E-value=3.5e-26 Score=226.31 Aligned_cols=198 Identities=21% Similarity=0.259 Sum_probs=158.6
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
.+.+| |+++||+++|++|++++++.++ +++++|++|||+++.+++.+.+.|+ +|+|+|++|++.++++|++ +|+
T Consensus 2 ~~~~t-P~~vid~~~l~~Ni~~~~~~~~~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~--~il 78 (374)
T cd06812 2 AALDT-PFLLLDEARMDRNIARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYR--DIL 78 (374)
T ss_pred CCCCC-ceEEEeHHHHHHHHHHHHHHHHHcCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCC--eeE
Confidence 36789 9999999999999999999886 6889999999999999999999997 9999999999999999994 677
Q ss_pred EeCCCCCHHHHHHHHH---cCCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCccc--
Q 015304 104 YANPCKPVSHIKYAAN---VGVN-LTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQE-- 173 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~---~gv~-~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~-- 173 (409)
+..+ +.+++++.+.+ .++. .++|||.++++.|.+.+ ...+|.|||+++ ++|||+. +++
T Consensus 79 ~~~~-~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~G---------~~R~Gv~--~~~~~ 146 (374)
T cd06812 79 YAVG-IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCD---------GHRGGIA--PDSDA 146 (374)
T ss_pred EeCC-CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCCceEEEEEeCCC---------CCcCCCC--CCcHH
Confidence 7766 46676766554 4443 47999999999998764 346788898762 4899998 643
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCC--CCCHHHHH----HHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCC
Q 015304 174 IVPLLEAAEASGLSVVGVAFHIGSA--ATKFAAYR----GAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTN 240 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H~gs~--~~~~~~~~----~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~ 240 (409)
+.++++.++..++++.|+|+|.|++ +.+.+.+. ++++.+.++.+.+++.|+ .+.++|+||+....+
T Consensus 147 ~~~l~~~i~~~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~v~~Ggt~~~~~ 218 (374)
T cd06812 147 LLEIARILHDGGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGL-PCPVVSVGSTPTAHF 218 (374)
T ss_pred HHHHHHHHhcCCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCEEeecCChhhhh
Confidence 5566666655689999999999986 34555443 344557777777777788 899999999876643
No 39
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.95 E-value=3e-26 Score=247.61 Aligned_cols=324 Identities=16% Similarity=0.130 Sum_probs=248.6
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCH
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP----EPALLEALAALGS-NFDCASR 86 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~ 86 (409)
..+.++++... +..+. ++.++|+++|++|++.+++.++ +.+++.+||||+ ..+|++.+.+.|+ +|.|+++
T Consensus 444 ~~le~i~~~~~---~~~~~-~~~~Idl~al~~N~~~i~~~~~~~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~l 519 (822)
T PRK11930 444 FEFEQITELLE---QKVHE-TVLEINLNAIVHNLNYYRSKLKPETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAYA 519 (822)
T ss_pred CCHHHHHHHHH---Hhhhh-HHhhhhHHHHHHHHHHHHhhCCCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeeH
Confidence 55666665553 25666 8889999999999999998775 688999999998 6899999999999 9999999
Q ss_pred HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC-----CCCeEEEEEecCCCCCCCCCC
Q 015304 87 SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH-----PKCDLLIRIKPPDDSGAKHPL 161 (409)
Q Consensus 87 ~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~-----~~~~v~lRv~~~~~~~~~~~~ 161 (409)
.|+..++++|++. +|++.+|. +++++.++++++. ++++|.++++.+.+.+ ...++.|.|+++
T Consensus 520 ~Ea~~lr~~g~~~-~Ilvl~~~--~~~~~~~~~~~l~-~~i~s~~~l~~l~~~~~~~~~~~~~v~l~vDtG--------- 586 (822)
T PRK11930 520 DEGVSLRKAGITL-PIMVMNPE--PTSFDTIIDYKLE-PEIYSFRLLDAFIKAAQKKGITGYPIHIKIDTG--------- 586 (822)
T ss_pred HHHHHHHhcCCCC-CEEEEeCC--HHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCCceEEEEEeeCC---------
Confidence 9999999999874 68888884 6789999999996 7999999999997764 234566666642
Q ss_pred CCCcCCCCCcccHHHHHHHHHH-cCCeEEEEEEeeCCCCC-CH-HHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCc
Q 015304 162 DSKYGVDHHPQEIVPLLEAAEA-SGLSVVGVAFHIGSAAT-KF-AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSF 238 (409)
Q Consensus 162 ~srfGi~~~~~~~~~~~~~~~~-~~l~l~Glh~H~gs~~~-~~-~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~ 238 (409)
.+|+|+. ++++.++++.+.. +++++.|+++|+++... +. ....+|+++|.++.+.+++.+... .++++++.-++
T Consensus 587 m~R~G~~--~~~~~~~~~~i~~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~~~~~-~~~h~~nS~~~ 663 (822)
T PRK11930 587 MHRLGFE--PEDIPELARRLKKQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEALGYK-PIRHILNSAGI 663 (822)
T ss_pred CCCCCCC--hHHHHHHHHHHHhCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccCCC-CcEEccCCHHH
Confidence 3999999 8888888888765 57999999999998753 32 234678899988888777553313 36788887666
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCC
Q 015304 239 TNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYG 312 (409)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~ 312 (409)
....+..+ +++|.++..|. .. |.+. ...-+.|+++|.++|+.+|.. |+ +.+|..+.+++.
T Consensus 664 ~~~~~~~~----d~vR~G~~lyG-~~--p~~~-------~~~~l~pv~~l~a~i~~v~~~~~G~~vgYg~~~~~~~~~~i 729 (822)
T PRK11930 664 ERFPDYQY----DMVRLGIGLYG-VS--ASGA-------GQQALRNVSTLKTTILQIKHVPKGETVGYGRKGVVTKPSRI 729 (822)
T ss_pred hCCccccC----CeEeeCceeEC-CC--CCCC-------ccccCEEeeEEEEEEEEEEEcCCcCCCCCCCcEEcCCCcEE
Confidence 43322223 57899998883 21 1111 012368999999999999984 43 356777777888
Q ss_pred Cccccccccccccccccccc-cccccCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCC
Q 015304 313 SFDWVNYDEAIAKCTPLTLA-SSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEM 380 (409)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 380 (409)
++.+++|.+++|+ .+++. +. +. ..++.++|+|++|| |+++.|++ . ++++||.|++++.
T Consensus 730 a~v~iGYaDG~~r--~~s~~~~~-v~----i~g~~~pivGrv~M--D~~~vdvt~~-~~~~Gd~v~l~g~ 789 (822)
T PRK11930 730 ATIPIGYADGLNR--RLGNGVGY-VL----VNGQKAPIVGNICM--DMCMIDVTDI-DAKEGDEVIIFGE 789 (822)
T ss_pred EEEeeeccccccc--ccCCCceE-EE----ECCEEcceeeEeec--ceEEEEcCCC-CCCCCCEEEEECC
Confidence 8899999999876 44432 22 22 15689999999999 99999884 4 6889999988875
No 40
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.94 E-value=1.1e-24 Score=215.08 Aligned_cols=262 Identities=14% Similarity=0.085 Sum_probs=190.5
Q ss_pred HHHHHHhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcC-CcHHHHHHHHHcCC-cEEEcCHHHHHH
Q 015304 18 FVRSTILKR--QEFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCN-PEPALLEALAALGS-NFDCASRSEIEA 91 (409)
Q Consensus 18 ~~~~~~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan-~~~~vl~~l~~~G~-g~~vaS~~E~~~ 91 (409)
+|+.-+..+ -.... ++|+||+++|++|++.+++.++ +.+++|++||| +++++++.+.+.|+ +|+|+|.+|++.
T Consensus 13 ~~~~a~~~~~~g~~~~-~~yvIDl~~I~~N~~~l~~~~~~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~Ea~~ 91 (382)
T cd06811 13 LIEAALTLHQSGAIPP-DTYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARA 91 (382)
T ss_pred HHHHHHHHHHcCCCCC-CEEEecHHHHHHHHHHHHHHHhhCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHHHHH
Confidence 455444444 44566 8999999999999999999886 68899999999 59999999999999 999999999999
Q ss_pred HHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCC
Q 015304 92 VLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGV 167 (409)
Q Consensus 92 a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi 167 (409)
++++|+++.+|. ....+++++++.++++++..++|||+++++.|.+.+ +..+|.|||+++. ..+.+++|.|+
T Consensus 92 lr~aGi~~~~I~-~l~~~~~~el~~~v~~~~~~i~V~s~~~l~~L~~~A~~~g~~~~V~LrVdtg~---~ri~~g~~~G~ 167 (382)
T cd06811 92 LHEAGLPLGHVG-HLVQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVYGDE---DTLYPGQEGGF 167 (382)
T ss_pred HHHcCCCHHhEE-EccCCCHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEECCC---CccccCcccee
Confidence 999999877777 444457899999999997558999999999998754 3568999999842 23345667799
Q ss_pred CCCcccHHHHHHHHHH-cCCeEEEEEEeeCCCCCCH----HHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC
Q 015304 168 DHHPQEIVPLLEAAEA-SGLSVVGVAFHIGSAATKF----AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN 242 (409)
Q Consensus 168 ~~~~~~~~~~~~~~~~-~~l~l~Glh~H~gs~~~~~----~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~ 242 (409)
+ ++++.++++.+++ .++++.|+|.| ++...+. ..+..+++.+.++.+.+++.|. .+.++|+||.=.....
T Consensus 168 ~--~~e~~~~~~~i~~l~~l~l~Githf-~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g~-~~~~is~Gga~ss~~l- 242 (382)
T cd06811 168 P--LEELPAVLAAIKALPGIRIAGLTSF-PCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGI-EILQLNAPSATSCATL- 242 (382)
T ss_pred c--HHHHHHHHHHHHcCCCcEEEeEccc-chhhcccCcccccHHHHHHHHHHHHHHHHHCCC-CCeEEccCCCcchhhH-
Confidence 8 8899999988876 58999999554 5532111 1245567777777787887787 8899998753111000
Q ss_pred CCCH-HHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCC
Q 015304 243 TKSF-QEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGE 300 (409)
Q Consensus 243 ~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~ 300 (409)
+.+ +.-.+++|+++..|... |.... ...-..+|++++++|..+|. |+
T Consensus 243 -~~~~~~~~t~vRpG~~LyG~~-----p~~~~----~~~~lkpam~l~s~Is~~~~-G~ 290 (382)
T cd06811 243 -PLLAEYGVTHGEPGHALTGTT-----PLHAV----GDQPEKPAMVYVSEVSHTFG-GH 290 (382)
T ss_pred -HHHHhCCCcEEeccEEEecCc-----chhhc----cccCCcccEEEEEEEEEecC-Cc
Confidence 000 11123455555555321 11001 11126789999999999986 54
No 41
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.93 E-value=1e-24 Score=215.92 Aligned_cols=235 Identities=23% Similarity=0.255 Sum_probs=168.7
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
+| |+++||+++|++|++++++.++ +++++|++|+|.++.+++.+.+.|+ +|+|+|.+|++.++++|++ +|+|.+
T Consensus 2 ~t-P~l~idl~~l~~N~~~m~~~~~~~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~--~il~~~ 78 (382)
T cd06818 2 SL-PLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR--RVLLAN 78 (382)
T ss_pred CC-cEEEEEHHHHHHHHHHHHHHHhhcCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCC--eEEEec
Confidence 58 9999999999999999999884 5899999999999999999999999 9999999999999999984 688875
Q ss_pred CC--CCH-HHHHHHHHc--CCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHH
Q 015304 107 PC--KPV-SHIKYAANV--GVN-LTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVP 176 (409)
Q Consensus 107 p~--k~~-~~i~~a~~~--gv~-~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~ 176 (409)
|. ++. +++..+++. +.. .+++||.++++.|.+.+ +..++.|+||++ .+|.|+.. .+++.+
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~g---------~~R~G~~~-~~~~~~ 148 (382)
T cd06818 79 QLVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP---------GGRTGVRT-EAEALA 148 (382)
T ss_pred CcCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCC---------CCCCCCCC-HHHHHH
Confidence 43 333 347777753 432 37999999999998764 346889999862 48999961 356788
Q ss_pred HHHHHHH-cCCeEEEEEEeeCCCC-----CCHHHHHHHHHHHHHHHHHHHHcCCCCCcE-EeecCCCCcCCCCCCCHHHH
Q 015304 177 LLEAAEA-SGLSVVGVAFHIGSAA-----TKFAAYRGAIAAAKAVFETAARLGNNKMRV-LDIGGGFSFTNSNTKSFQEA 249 (409)
Q Consensus 177 ~~~~~~~-~~l~l~Glh~H~gs~~-----~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~-ldiGGG~~~~~~~~~~~~~~ 249 (409)
+++.+.+ +++++.|||+|.|++. .+.+...+..+.+.++.+.+++.+...++. ++.|||- ++++..
T Consensus 149 l~~~i~~~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ilSgGgT-------~~~~~~ 221 (382)
T cd06818 149 LADAIAASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGS-------AWFDLV 221 (382)
T ss_pred HHHHHHcCCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCC-------HhHHHH
Confidence 8888766 5899999999999862 233344445555555665555444213333 5556662 233322
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEE
Q 015304 250 ASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQII 293 (409)
Q Consensus 250 ~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~ 293 (409)
. +.+..+... .++++.+|||||++.+++.+.+.|.
T Consensus 222 ~----~~~~~~~~~-----~~~~~el~pG~y~~~D~g~~~~~~~ 256 (382)
T cd06818 222 A----EALAALALD-----GPVTLVLRSGCYVTHDHGIYRRAQQ 256 (382)
T ss_pred H----HhhcccccC-----CceeEEEecCeeEEecHHHHhhhhh
Confidence 1 222222111 2457899999999998765444433
No 42
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.92 E-value=7.5e-24 Score=208.68 Aligned_cols=254 Identities=17% Similarity=0.164 Sum_probs=184.4
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
.+++| |+++||+++|++|++.+++.++ +.++++++|||+++.+++.+.+.|+ +|+|+|.+|++.++++|++ +|++
T Consensus 5 ~~~~t-P~~~id~~~l~~Ni~~~~~~~~~~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~ill 81 (361)
T cd06821 5 DEIIS-PALAVYPDRIEENIRRMIRMAGDPQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAP--DVLL 81 (361)
T ss_pred ccCCC-ceEEEeHHHHHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCC--eEEE
Confidence 46889 9999999999999999999887 4689999999999999999999999 9999999999999999995 5666
Q ss_pred eCCC---CCHHHHHHHHHcC-C-cEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCCCCCCCCCCCcCCCCCcc-cH
Q 015304 105 ANPC---KPVSHIKYAANVG-V-NLTTFDSVEELHKIRKWHP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQ-EI 174 (409)
Q Consensus 105 ~gp~---k~~~~i~~a~~~g-v-~~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~-~~ 174 (409)
..|. +..+.++.+.+.. . ..++|||+++++.+.+.+. ..+|.|||+++ .+|||+. ++ ++
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Vds~~~l~~l~~~a~~~~~~~~V~l~Vd~G---------~~R~Gv~--~~~~~ 150 (361)
T cd06821 82 AYPLVGPNIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTG---------MNRTGIA--PGEDA 150 (361)
T ss_pred eCCCCHHHHHHHHHHHhhCCCCeEEEEECCHHHHHHHHHHHHHcCCeEEEEEEeCCC---------CCcCCCC--ChHHH
Confidence 5432 2223344444432 2 1379999999999987652 46788888863 3899998 76 78
Q ss_pred HHHHHHHHH-cCCeEEEEEEeeCCCC-CC----HHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHH
Q 015304 175 VPLLEAAEA-SGLSVVGVAFHIGSAA-TK----FAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQE 248 (409)
Q Consensus 175 ~~~~~~~~~-~~l~l~Glh~H~gs~~-~~----~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~ 248 (409)
.++++.+++ +++++.|||+|.|+.. .+ .+.+.++++.+.++.+.+++.|. .+.++++||+-.........
T Consensus 151 ~~l~~~i~~~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~v~~GgS~~~~~~~~~~--- 226 (361)
T cd06821 151 EELYRAIATLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGL-PVPELVAGGTPSFPFHAAYT--- 226 (361)
T ss_pred HHHHHHHhhCCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCcchhhhccCC---
Confidence 899988866 6899999999998753 23 33466778888888888888887 88899999875443221111
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCc
Q 015304 249 AASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGK 310 (409)
Q Consensus 249 ~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~ 310 (409)
.+.++.+..-|... |..... ++ .-..+|+.++|+|+++-.. ..+.+|.|.
T Consensus 227 -~~~vr~G~~l~gd~-----~~~~~~--~~-~~~~~al~v~s~Vis~~~~---~~~~~d~G~ 276 (361)
T cd06821 227 -DVECSPGTFVLWDA-----GYGSKL--PD-LGFKPAALVVTRVISHPTA---GRVTLDLGH 276 (361)
T ss_pred -CcEECCceEEEecH-----HHhhcc--CC-CcCceeEEEEEEEEeeccC---CEEEECCcc
Confidence 13445444433211 111110 11 1267899999999987532 256677764
No 43
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.92 E-value=3e-23 Score=205.57 Aligned_cols=262 Identities=19% Similarity=0.179 Sum_probs=180.7
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHH-cCC-cEEEcCHHHHHHHHhCCCCCCcEEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAA-LGS-NFDCASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~-~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
.+++| |+++||+++|++|++.+++.+++.+++|++||++++.+++.+.+ .|+ +|.|+|+.|+..++++|+ ++|++
T Consensus 7 ~~~~t-P~~viDldal~~N~~~l~~~~~~~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~--~~ILl 83 (388)
T cd06813 7 AGLDA-PFAFVDLDALDANAADLVRRAGGKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGF--DDILV 83 (388)
T ss_pred ccCCC-CEEEEEHHHHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCC--CeEEE
Confidence 47889 99999999999999999998888899999999999999998777 598 999999999999999999 57999
Q ss_pred eCCCCCHHHHHHHHHc-----CCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCC-CCcCCCCCcccH
Q 015304 105 ANPCKPVSHIKYAANV-----GVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLD-SKYGVDHHPQEI 174 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~-----gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~-srfGi~~~~~~~ 174 (409)
.+|.+++++++.+++. ++ .++|||.++++.|.+.+ ...+|.|||+++.... .+.+| .|-|+. .++++
T Consensus 84 ~~p~~~~~~l~~~~~~~~~~~~i-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDtGm~R~-G~~~G~~Rs~~~-~~~~~ 160 (388)
T cd06813 84 AYPSVDRAALRELAADPKLGATI-TLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRFG-GLHFGVRRSPLH-TPAQA 160 (388)
T ss_pred eCCCCCHHHHHHHHhhhccCCeE-EEEEcCHHHHHHHHHHHHhcCCceEEEEEECCCcccc-ccccCcCCCCCC-CHHHH
Confidence 9998899999999875 45 37999999999998764 3467899998754321 11122 344443 14678
Q ss_pred HHHHHHHHH-cCCeEEEEEEeeCC-C-CCCH-H--------------HHHHHHHH-HHHHHHHHHHcCCCCCcEEeecCC
Q 015304 175 VPLLEAAEA-SGLSVVGVAFHIGS-A-ATKF-A--------------AYRGAIAA-AKAVFETAARLGNNKMRVLDIGGG 235 (409)
Q Consensus 175 ~~~~~~~~~-~~l~l~Glh~H~gs-~-~~~~-~--------------~~~~~i~~-~~~~~~~~~~~g~~~~~~ldiGGG 235 (409)
.++++.+.+ .++++.|||+|.|+ + ..|. . ...+++.. ..++++.+++.|. ++.++| |||
T Consensus 161 ~~l~~~i~~~~~l~l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~g~-~~~~vN-sgG 238 (388)
T cd06813 161 LALAKAIAARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAEGE-DLEFVN-GGG 238 (388)
T ss_pred HHHHHHHhcCCCcEEEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCEEe-CCC
Confidence 888888765 58999999999876 2 1111 0 11122322 2355666677787 788999 444
Q ss_pred CCc-CCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcC
Q 015304 236 FSF-TNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKY 311 (409)
Q Consensus 236 ~~~-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~ 311 (409)
.+. +... .+...+.++.+...|.+. |. . ....+-..+|+++.++|+ +..+. ...+++.|.|
T Consensus 239 t~s~~~~~---~~~~~tevrpGs~lyg~~-----~~-~---~~~~~~~~pAl~~~t~Vv--~~~~~-g~~v~ygg~~ 300 (388)
T cd06813 239 TGSLESTA---ADAVVTEVTAGSGLYAPA-----LF-D---HYRSFQPEPAAGFALPVV--RRPAP-GIVTCLGGGY 300 (388)
T ss_pred chhheeec---CCCCceEeccceEEecch-----hh-c---ccccCCCCceeEEEeeEE--cccCC-CeEEEECCcc
Confidence 443 2111 011123456666555321 11 0 011123679999999994 43222 2355565544
No 44
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.91 E-value=1.6e-22 Score=198.58 Aligned_cols=252 Identities=17% Similarity=0.181 Sum_probs=183.8
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
+| |+++||+++|++|++.+++.++ +++++|++|+|+++.+++.+.+.|+ +|+|+|+.|++.+++.|++ +|++..
T Consensus 2 ~t-P~l~id~~~l~~Ni~~~~~~~~~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~i~i~~ 78 (353)
T cd06820 2 DT-PALLIDLDRLERNIARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLS--DIFIAY 78 (353)
T ss_pred CC-ceEEEeHHHHHHHHHHHHHHHHHcCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCC--eEEEEC
Confidence 58 9999999999999999999885 5899999999999999999999998 9999999999999999994 588877
Q ss_pred CCCCHHH---HHHHHHcCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCCCCCCCCCCCcCCCCCc-ccHHHHH
Q 015304 107 PCKPVSH---IKYAANVGVNLTTFDSVEELHKIRKWHP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHP-QEIVPLL 178 (409)
Q Consensus 107 p~k~~~~---i~~a~~~gv~~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~-~~~~~~~ 178 (409)
|...+.. +..+++.....+++||+++++.|.+.++ +.+|.|||+++ .+|+|+. + +++.+++
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~~vds~~~l~~L~~~a~~~~~~~~V~l~vd~G---------~~R~Gv~--~~~~~~~l~ 147 (353)
T cd06820 79 PIVGRQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG---------MNRCGVQ--TPEDAVALA 147 (353)
T ss_pred CcCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCeeEEEEEECCC---------CCcCCCC--ChHHHHHHH
Confidence 7544443 4444443322479999999999988653 46789999863 4899998 7 8888999
Q ss_pred HHHHH-cCCeEEEEEEeeCCCCCC---HHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHH
Q 015304 179 EAAEA-SGLSVVGVAFHIGSAATK---FAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIK 254 (409)
Q Consensus 179 ~~~~~-~~l~l~Glh~H~gs~~~~---~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~ 254 (409)
+.+.+ +++++.|+|+|.|+.... ...+.++++++.++.+.+++.|+ .+.++++||+....+...+ ...+.++
T Consensus 148 ~~i~~~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~vs~Ggs~t~~~~~~~---~~~~elR 223 (353)
T cd06820 148 RAIASAPGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEEAGL-EPPVVSGGSTPTLWRSHEV---PGITEIR 223 (353)
T ss_pred HHHHhCCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCcChhhhhhhcc---CCceEEc
Confidence 88866 689999999999987532 23456777788888887887888 8899999998655432100 0012233
Q ss_pred HHHHhhCCCCCCCCCCcEEEEcCCc-eeeeccEEEEEEEEEEEEeCCeeEEEEeCCcC
Q 015304 255 EALHAYFPNELLPGSSLRVISEPGR-FFTYSAFTLYTQIIGKRVHGEMRNYWINDGKY 311 (409)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~l~~EpGR-~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~ 311 (409)
.+..-|.+.. ... .|. ..-.+|..++++|+++... ...++|.|..
T Consensus 224 ~G~~i~~d~~-----~~~----~~~~~~~~~a~~v~a~Vis~~~~---~~~i~d~G~~ 269 (353)
T cd06820 224 PGTYIFNDAS-----QVA----LGACTLDDCALTVLATVVSRPTA---ERAVLDAGSK 269 (353)
T ss_pred cccEEeecHH-----HHh----cCCCChhheEEEEEEEEecccCC---CeEEECCccc
Confidence 3222221100 000 010 1235688899999987632 2466777753
No 45
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=99.88 E-value=1.1e-22 Score=167.57 Aligned_cols=107 Identities=44% Similarity=0.746 Sum_probs=83.8
Q ss_pred EEEEEEEEEEEeCC-------eeEEEEeCCcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCc
Q 015304 287 TLYTQIIGKRVHGE-------MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADE 359 (409)
Q Consensus 287 ~l~t~V~~~k~~g~-------~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~ 359 (409)
+|+|+|+++|+.++ .+++++|+|+++++.+.+++..++.. ++... .+.+..++.|+||||++.|+
T Consensus 1 ~Lvt~Vi~~k~~~~~~~~~~~~~~~~vd~G~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~i~GptC~~~D~ 72 (116)
T PF00278_consen 1 TLVTRVIGVKRRRDSDLKNKKRRWYYVDDGVYGSFDPWLYDHQFPIL-PLSRP-------DEEPCYPSTIWGPTCDSGDV 72 (116)
T ss_dssp EEEEEEEEEEEETT---HCTTEEEEEESS-TTTCCHHHHHS----EE-EESST-------TTSTEEEEEEEESSSSTTSE
T ss_pred CEEEEEEEEEEcCCCccccceeeEEEEeCChhhChHHHhhCcCceee-eeccc-------cccCcEEEEEEECCcCCCce
Confidence 68999999998765 56788999999998888887766542 23321 12266899999999999999
Q ss_pred cccCCCCC-CCCCCCEEEEcCCCccccccCCCCCCCCCCcEEE
Q 015304 360 VFSGHKLP-ELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 360 l~~~~~lp-~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
+.++..|| ++++||||+|.++|||+++++++||++++|++|+
T Consensus 73 i~~~~~lP~~l~~GD~l~f~~~GAYt~~~~~~Fn~~~~p~~v~ 115 (116)
T PF00278_consen 73 IARDVMLPKELEVGDWLVFENMGAYTISLSSNFNGFPRPAEVY 115 (116)
T ss_dssp EEEEEEEESTTTTT-EEEESS-SSSSGGGSBCGGGT-SCEEEE
T ss_pred EeeeccCCCCCCCCCEEEEecCcccchhhCccccCCCCCCEEE
Confidence 99999999 9999999999999999999999999999996654
No 46
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.86 E-value=1.8e-20 Score=183.50 Aligned_cols=240 Identities=20% Similarity=0.220 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhC--CCcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHH
Q 015304 41 VVVTLYNQMISKL--PMIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYA 117 (409)
Q Consensus 41 ~l~~n~~~~~~~~--~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a 117 (409)
+|++|++++++.+ +++++++++||+.++.+++.+.++|+ +|+|+|+.|++.++++|+ .+|++.+|..++++++.+
T Consensus 1 ~l~~Ni~~~~~~~~~~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~--~~Ili~~~~~~~~~~~~~ 78 (345)
T cd07376 1 ALEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGV--KDILMAYPLVGPAAIARL 78 (345)
T ss_pred ChHHHHHHHHHHHHHcCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCC--CeEEEECCcCCHHHHHHH
Confidence 4789999999887 36899999999999999999999998 999999999999999998 689999998767777766
Q ss_pred H---H--cCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHH--H-cC
Q 015304 118 A---N--VGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAE--A-SG 185 (409)
Q Consensus 118 ~---~--~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~--~-~~ 185 (409)
. + +++. ++|||.++++.|.+.+ .+.+|.|+|+++ .+|+|++ +++...+....+ + .+
T Consensus 79 ~~l~~~~~~i~-~~Vds~~~l~~l~~~a~~~~~~~~V~l~ID~G---------~~R~Gv~--~~~~~~l~~~~~i~~~~~ 146 (345)
T cd07376 79 AGLLRQEAEFH-VLVDSPEALAALAAFAAAHGVRLRVMLEVDVG---------GHRSGVR--PEEAAALALADAVQASPG 146 (345)
T ss_pred HHHHhcCCeEE-EEECCHHHHHHHHHHHHhcCCeeEEEEEeCCC---------CCcCCCC--CcHHHHHHHHHHhccCCC
Confidence 5 3 5664 7899999999998765 345788888752 4899998 765544433222 3 58
Q ss_pred CeEEEEEEeeCCCCC-C-----HHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC-CCCHHHHHHHHHHHHH
Q 015304 186 LSVVGVAFHIGSAAT-K-----FAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN-TKSFQEAASIIKEALH 258 (409)
Q Consensus 186 l~l~Glh~H~gs~~~-~-----~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~-~~~~~~~~~~i~~~l~ 258 (409)
+++.|+|+|.|+... + .+.+.++++++.++++.++ .|+ .+.++++||.-...... ... .+.++.+..
T Consensus 147 l~l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~-~~~~vs~G~S~~~~~~~~~~~----~~~vR~G~~ 220 (345)
T cd07376 147 LRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE-RGL-ACPTVSGGGTPTYQLTAGDRA----VTELRAGSY 220 (345)
T ss_pred eEEeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH-cCC-CCCEEEeCCCcChhhcccCCC----CEEEcCceE
Confidence 999999999996532 2 2244567777776666555 477 77899999875543221 111 133455544
Q ss_pred hhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcC
Q 015304 259 AYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKY 311 (409)
Q Consensus 259 ~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~ 311 (409)
-|... +. ...+..-..++..++|+|+++-... ....+|.|..
T Consensus 221 lyg~~-----~~----~~~~~~~~~~~a~~~~~Vis~~~~~--~~~~~d~G~k 262 (345)
T cd07376 221 VFMDT-----GF----DTLGACAQRPAAFRVTTVISRPAPT--GRAVLDAGWK 262 (345)
T ss_pred Eecch-----HH----hhcccCCccceeEEEEEEEeccCCC--CeEEECCCcc
Confidence 44321 01 1112222357777789999876311 2566777643
No 47
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.83 E-value=5.3e-19 Score=162.31 Aligned_cols=185 Identities=19% Similarity=0.197 Sum_probs=148.4
Q ss_pred EeHHHHHHHHHHHHHhC---C-CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCC-CCcEEEeCCCCC
Q 015304 37 LDLGVVVTLYNQMISKL---P-MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVS-PDRIIYANPCKP 110 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~---~-~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~-~~~Ii~~gp~k~ 110 (409)
-++++|++|++.+++.+ + +++++.++|++....+.+. .++|+ +|.|+++.|+..+++++.. .-.+++.|+. .
T Consensus 3 ~~~~~l~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~-~~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~llg~~-~ 80 (222)
T cd00635 3 ENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREA-IEAGQRDFGENRVQEALDKAEELPDPDIEWHFIGHL-Q 80 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHH-HHcCCcccCCCcHHHHHHHHHHccCCCceEEEECcc-c
Confidence 47889999999999887 4 6899999999988888876 47898 9999999999999998543 2244555653 4
Q ss_pred HHHHHHHHH-cCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-c
Q 015304 111 VSHIKYAAN-VGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-S 184 (409)
Q Consensus 111 ~~~i~~a~~-~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~ 184 (409)
+++++.+++ .++. +++||+++++.|.+.+ ...+|.|||+++. ..+|||++ ++++.++++.++. +
T Consensus 81 ~~~~~~~~~~~~~~-~~v~s~~~l~~l~~~a~~~~~~~~v~lkvdtG~-------~~~R~G~~--~~~~~~~~~~i~~~~ 150 (222)
T cd00635 81 TNKVKYAVRLFDLI-HSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGG-------EESKSGVA--PEELEELLEEIAALP 150 (222)
T ss_pred cccHHHHHhhCCEE-EEcCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-------CCCCCCCC--HHHHHHHHHHHHcCC
Confidence 578888887 4774 7999999999998754 3468999999731 02899999 8899999988866 4
Q ss_pred CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCCcEEeecCC
Q 015304 185 GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARL-GNNKMRVLDIGGG 235 (409)
Q Consensus 185 ~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~-g~~~~~~ldiGGG 235 (409)
++++.|+|+|.++ ..+.+.+.++.+.+..+.+.+++. |+ .+++||+||.
T Consensus 151 ~l~~~Gi~sh~s~-~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~is~G~t 200 (222)
T cd00635 151 NLRIRGLMTIAPL-TEDPEEVRPYFRELRELRDELGAKGGV-NLKELSMGMS 200 (222)
T ss_pred CCcEEEEEEECCC-CCChHHHHHHHHHHHHHHHHHHHhcCC-CCCEEECccc
Confidence 8999999999654 456677778888888888777765 58 8999998886
No 48
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.81 E-value=7.2e-19 Score=161.09 Aligned_cols=182 Identities=20% Similarity=0.290 Sum_probs=149.8
Q ss_pred EeHHHHHHHHHHHHHhC-CCcceEEecCcCC-cHHHHHHHH-Hc-CC-cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCH
Q 015304 37 LDLGVVVTLYNQMISKL-PMIHPHYAVKCNP-EPALLEALA-AL-GS-NFDCASRSEIEAVLALGVSPDRIIYANPCKPV 111 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~-~~~~i~yavKan~-~~~vl~~l~-~~-G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 111 (409)
+|+++|++|++.+++.. ++.+++.++|+|+ ...+.+.+. .. |+ +|.|+++.|++.+++.| .+|++.++ ..+
T Consensus 1 Idl~al~~Ni~~~~~~~~~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g---~~il~l~~-~~~ 76 (218)
T PF01168_consen 1 IDLDALRHNIRKIRQRAGPGTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAG---APILVLGP-IPP 76 (218)
T ss_dssp EEHHHHHHHHHHHHHHHCTTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTT---SEEEEESE-STG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcC---CceEEEcC-CCh
Confidence 69999999999999988 4567999999975 456666555 44 67 99999999999999999 57888888 577
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-cCC
Q 015304 112 SHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-SGL 186 (409)
Q Consensus 112 ~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~~l 186 (409)
++++.++++++. ++|||.++++.|.+.+ ...+|.|.|+++ .+|+|+. ++++.++++.++. +++
T Consensus 77 ~~~~~~~~~~~~-~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdtG---------~~R~G~~--~~~~~~l~~~i~~~~~l 144 (218)
T PF01168_consen 77 EELEELVEYNII-PTVDSLEQLEALSKAAKKQGKPLKVHLKVDTG---------MGRLGVR--PEELEELAEAIKALPNL 144 (218)
T ss_dssp GGHHHHHHTTEE-EEE-SHHHHHHHHHHHHHHTSTEEEEEEBESS---------SSSSSBE--CHHHHHHHHHHHHTTTE
T ss_pred hhHHHHhhCcEE-EEEchhhHHHHHHHHHHHcCCceEEEEeeccc---------ccccCCC--HHHHHHHHHHHhcCCCc
Confidence 899999998774 7999999999998875 567899999873 3799999 8999999999876 689
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCC
Q 015304 187 SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGG 235 (409)
Q Consensus 187 ~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG 235 (409)
++.|+++|+++.......-.++++++.++.+.+++.+. +..++++|+.
T Consensus 145 ~l~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~~~-~~~~~s~g~S 192 (218)
T PF01168_consen 145 RLEGLMTHFAHADDPDYTNQEQFERFRELAEALEKAGI-PPPIVSMGNS 192 (218)
T ss_dssp EEEEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHTTT-TCSEEEEEBH
T ss_pred eEeeEeccccccCCHHHHHHHHHHHHHHHHHHHHhccC-CCceecCCCC
Confidence 99999999998753222223488999999998888776 8889999885
No 49
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.81 E-value=4.8e-18 Score=167.73 Aligned_cols=193 Identities=19% Similarity=0.284 Sum_probs=150.1
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcC---CcEEEcCHHHHHHHHhCCCCCC--
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALG---SNFDCASRSEIEAVLALGVSPD-- 100 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G---~g~~vaS~~E~~~a~~~G~~~~-- 100 (409)
+..| |+.++|+++|++|++.+++..+ +.+++.++||+..+.+++.+.+.| .+|.|+++.|++.+++.|+...
T Consensus 3 ~l~t-P~l~Idl~al~~Ni~~m~~~~~~~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~ 81 (389)
T cd06817 3 DLPT-PALVIDRAKFKRNCERMLQRAKALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVD 81 (389)
T ss_pred CCCC-CeEEEEHHHHHHHHHHHHHHHHHcCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhccccccc
Confidence 4678 9999999999999999998765 588999999999999999999988 4999999999999999998643
Q ss_pred cEEEeCCCCCHHHHHHHHHc----C-CcEEEecCHHHHHHHHhH-CC----CCeEEEEEecCCCCCCCCCCCCCcCCCCC
Q 015304 101 RIIYANPCKPVSHIKYAANV----G-VNLTTFDSVEELHKIRKW-HP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHH 170 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~----g-v~~~~vds~~el~~i~~~-~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~ 170 (409)
+|++..|. .+++++.+++. + +. ++|||.++++.+.+. +. ..+|.|.|+++ .+|.|+.
T Consensus 82 dilla~~~-~~~~~~~l~~l~~~~~~i~-~~Vds~~~l~~l~~~~a~~~g~~~~V~lkvDtG---------m~R~Gv~-- 148 (389)
T cd06817 82 DILYGLPV-PPSKLPRLAELSKKLGHLR-VMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCG---------THRAGVP-- 148 (389)
T ss_pred cEEEECCC-CHHHHHHHHHHHhhcCceE-EEECCHHHHHHHHHHHhhccCCceEEEEEEcCC---------CCcCCCC--
Confidence 26666575 67888888776 3 64 799999999999876 42 35677777652 4899998
Q ss_pred cc--cHHHHHHHHHH--cCCeEEEEEEeeCCCC--CCHHHHH----HHHHHHHHHHHHHHH-cCCCCCcEEeecCC
Q 015304 171 PQ--EIVPLLEAAEA--SGLSVVGVAFHIGSAA--TKFAAYR----GAIAAAKAVFETAAR-LGNNKMRVLDIGGG 235 (409)
Q Consensus 171 ~~--~~~~~~~~~~~--~~l~l~Glh~H~gs~~--~~~~~~~----~~i~~~~~~~~~~~~-~g~~~~~~ldiGGG 235 (409)
++ ++.++++.+.. +++++.|+++|+|+.. .+.+... +..+.+..+.+.+++ .|+ +..++..||.
T Consensus 149 ~~~~~~~~l~~~i~~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~vs~GgT 223 (389)
T cd06817 149 PESEDAKELIQKLEKASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGD-RKLTLSVGAT 223 (389)
T ss_pred CChHHHHHHHHHHHhhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCCC
Confidence 53 47778888765 5899999999999743 3333332 234444555566665 787 7788886664
No 50
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.80 E-value=5.5e-18 Score=167.02 Aligned_cols=193 Identities=18% Similarity=0.177 Sum_probs=143.5
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCCcHHHHHHHH-HcCC-cEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNPEPALLEALA-ALGS-NFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~~~~vl~~l~-~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
.+.+| |+.++|+++|++|++.+++..+ +.+++.++|||+...+++.+. +.|+ +|.|++..|++.+++.|.. .+|+
T Consensus 5 ~~l~T-P~l~IDl~al~~Ni~~m~~~~~~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~-~dIL 82 (379)
T cd06814 5 AGIGE-PTLLLDKDRLDHNIDLLREHLAGSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPD-ADIL 82 (379)
T ss_pred cCCCC-CEEEEEHHHHHHHHHHHHHhhCCCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCC-cCeE
Confidence 46789 9999999999999999998886 689999999999999999877 6898 9999999999998877643 5788
Q ss_pred EeCCCCCHHHHHHH----------HHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCC
Q 015304 104 YANPCKPVSHIKYA----------ANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDH 169 (409)
Q Consensus 104 ~~gp~k~~~~i~~a----------~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~ 169 (409)
+.+|. .++.+... .++++. ++|||.++++.+.+.+ ...++.|.|+++ .+|.|+.
T Consensus 83 l~~p~-~~~~~~r~~~~l~~~~~~~~~~l~-~~Vds~e~l~~l~~~a~~~g~~l~V~lkVDtG---------m~R~Gv~- 150 (379)
T cd06814 83 LGKPM-PVAAAARFYRQLTGSAFRPARQLQ-WLIDTPERLAQYRALARSLGLTLRINLELDVG---------LHRGGFA- 150 (379)
T ss_pred EeCCC-CcHHHHHHHhhccccccchhcCEE-EEECCHHHHHHHHHHHHHcCCceEEEEEeCCC---------CCCCCCC-
Confidence 88785 33444333 245564 7999999999998764 345677777652 3899998
Q ss_pred Ccc-cHHHHHHHHHH-cCCeEEEEEEeeCCC--CCCH---HHH-HHHHHHHHHHH---HHHHHcCCCCCcEEeecCC
Q 015304 170 HPQ-EIVPLLEAAEA-SGLSVVGVAFHIGSA--ATKF---AAY-RGAIAAAKAVF---ETAARLGNNKMRVLDIGGG 235 (409)
Q Consensus 170 ~~~-~~~~~~~~~~~-~~l~l~Glh~H~gs~--~~~~---~~~-~~~i~~~~~~~---~~~~~~g~~~~~~ldiGGG 235 (409)
++ ++.++++.+.. .++++.||++|-|+. ..+. +.- ....+.+..+. +.++..|+ .+.+++.||.
T Consensus 151 -~~~~~~~l~~~i~~~~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~vs~GgT 225 (379)
T cd06814 151 -DPQTLPKALTAIDAPPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLGAHT-QKLTLNTGGS 225 (379)
T ss_pred -CHHHHHHHHHHHHhCCCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCC-CccEEecCCC
Confidence 65 58888888866 589999999999873 2222 222 22222333333 33334488 8888886653
No 51
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=99.65 E-value=1.3e-14 Score=133.22 Aligned_cols=181 Identities=20% Similarity=0.225 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhCC----CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHH----HHhCC-CCCCcEEEeCCCC
Q 015304 40 GVVVTLYNQMISKLP----MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEA----VLALG-VSPDRIIYANPCK 109 (409)
Q Consensus 40 ~~l~~n~~~~~~~~~----~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~----a~~~G-~~~~~Ii~~gp~k 109 (409)
+.|.++++...+..+ +.+++.++|++....|.+.+ ++|+ +|.|++++|+.. ++++| + ...+.|+.-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~-~~G~~~fgva~~~Ea~~k~~~Lr~~g~~---~~~~lg~~~ 82 (224)
T cd06824 7 AQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAY-AAGQRHFGENYVQEALEKIEALRDLQDI---EWHFIGPIQ 82 (224)
T ss_pred HHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHH-HcCCcccCcChHHHHHHHHHHhccCCCe---eEEEEcCch
Confidence 455666655444332 37899999999999999986 8898 999999999996 77775 3 223557754
Q ss_pred CHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-c
Q 015304 110 PVSHIKYAANVGVNLTTFDSVEELHKIRKWHP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-S 184 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~ 184 (409)
+.++.+.+.++++. .+|||.++++.+.+.+. ..++.|.|+++. + .+|||++ ++++.++++.+.. +
T Consensus 83 ~~~~~~~~~~~~~~-~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~--G-----m~R~Gi~--~~~~~~~~~~i~~~~ 152 (224)
T cd06824 83 SNKTKLIAENFDWV-HSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISG--E-----DSKSGVA--PEDAAELAEAISQLP 152 (224)
T ss_pred hhhHHHHHhhCCEE-EecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCC--C-----CCCCCCC--HHHHHHHHHHHhcCC
Confidence 43557777888885 79999999999987642 357788888621 1 3899999 8888888888766 5
Q ss_pred CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCC
Q 015304 185 GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGF 236 (409)
Q Consensus 185 ~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~ 236 (409)
++++.|+|+|.++. .+.....+..+.+.++.+.+++.++ .+.++++|+.-
T Consensus 153 ~l~l~Gl~tH~a~~-~~~~~q~~~f~~~~~~~~~l~~~~~-~~~~is~gnS~ 202 (224)
T cd06824 153 NLRLRGLMAIPAPT-DDEAAQRAAFKRLRQLFDQLKKQYP-DLDTLSMGMSG 202 (224)
T ss_pred CCcEEEEEEeCCCC-CChHHHHHHHHHHHHHHHHHHhhCC-CCCEEeCcCcH
Confidence 89999999997663 3433333333333333455555566 77799999863
No 52
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=99.58 E-value=3.3e-13 Score=124.32 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=124.5
Q ss_pred CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHH----HHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 55 MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEA----VLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 55 ~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~----a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
++++..++|+++...+.+ +.+.|+ +|.+++..|+.. +++.| . .++++.||..+......+..+++. .++||
T Consensus 28 ~~~l~aV~K~~~~~~i~~-l~~~G~~~fg~~~~~Ea~~k~~~lr~~~-~-~~~~~ig~~q~~~~~~~~~~~~l~-~~vds 103 (229)
T TIGR00044 28 KVKLLAVSKTKPASAIQI-AYDAGQRAFGENYVQELVEKIKLLEDLG-K-LEWHFIGPLQSNKDRLVVENFDWV-HTIDS 103 (229)
T ss_pred CeEEEEEECCCCHHHHHH-HHHcCCccccEEcHHHHHHHHHHhcccC-C-ceEEEECCCcchHHHHHhhhcCEE-EEECC
Confidence 588999999999555555 889998 999999999976 55555 3 579999997666666666677774 79999
Q ss_pred HHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-cCCeEEEEEEeeCCCCCCHHH
Q 015304 130 VEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-SGLSVVGVAFHIGSAATKFAA 204 (409)
Q Consensus 130 ~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~~l~l~Glh~H~gs~~~~~~~ 204 (409)
.+.++.|.+.+ ...+|+|.|+++++ .+|.|+. ++++.++++.+.. +++++.|+++|.++.. +.+.
T Consensus 104 ~~~~~~l~~~a~~~~~~~~V~l~vdtg~g-------m~R~G~~--~~e~~~~~~~i~~~~~l~l~Gl~th~~~~~-~~~~ 173 (229)
T TIGR00044 104 LKIAKKLNEQREKLQPPLNVLLQINISDE-------ESKSGIQ--PEELLELAIQIEELKHLKLRGLMTIGAPTD-SHED 173 (229)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEECCCC-------CCCCCCC--HHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHH
Confidence 99999998764 34688999987321 3899999 8888899888866 5899999999998753 4444
Q ss_pred HHHHHHHHHHHHHHHHHcCC-CCCcEEeecCC
Q 015304 205 YRGAIAAAKAVFETAARLGN-NKMRVLDIGGG 235 (409)
Q Consensus 205 ~~~~i~~~~~~~~~~~~~g~-~~~~~ldiGGG 235 (409)
..+..+.+..+.+.+++.+. ..+..+.+|+.
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~~~lS~G~t 205 (229)
T TIGR00044 174 QEENFRFMKLLFWQIKQDSPFGTIDTLSMGMS 205 (229)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCEEeeeCc
Confidence 44455555556665555332 03566776664
No 53
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.50 E-value=5.2e-13 Score=128.77 Aligned_cols=196 Identities=22% Similarity=0.249 Sum_probs=142.9
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
....| |+.++|++++..|+.++++... ++++..++|+.+.+.+.+...+.|. |+-|+++.|++....+|+ ++|+
T Consensus 14 ~~l~t-P~~liD~dr~~~Ni~r~qa~~~~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi--~dIl 90 (368)
T COG3616 14 ADLDT-PAALIDLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGI--DDIL 90 (368)
T ss_pred cCCCC-chhhhhHHHHhhhHHHHHHhccccCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCc--cceE
Confidence 57899 9999999999999999998874 7899999999999999999999998 999999999999999998 6899
Q ss_pred EeCCCCCHHHHHHHHH--cCCc--EEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcc-cHHHHH
Q 015304 104 YANPCKPVSHIKYAAN--VGVN--LTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQ-EIVPLL 178 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~--~gv~--~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~-~~~~~~ 178 (409)
|..|......++...+ .... .+.+||.+.++.+.+.+.+...-+||....+.| .+|.|+. .. ....+.
T Consensus 91 ~a~p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D~G-----~~R~Gv~--t~~~~~~La 163 (368)
T COG3616 91 LAYPLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPLRVLIEIDSG-----LHRSGVR--TPEVAEALA 163 (368)
T ss_pred EecCCCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCCCeeEEEEeCCC-----CCccCcC--ChHHHHHHH
Confidence 9998766666664333 2222 357999999999998765444444444322222 3899997 54 444455
Q ss_pred HHHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCC
Q 015304 179 EAAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGG 235 (409)
Q Consensus 179 ~~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG 235 (409)
+.+.. .++.+.|+++|.|+............. .......+..|. ...++..||.
T Consensus 164 ~~~~~~~~l~~~Gv~~y~gh~~~~~~~~~~~~~--~~a~~~~~~~g~-~~~~vt~ggt 218 (368)
T COG3616 164 AEIAAAPGLRLAGVMTYPGHSYGPGSEVAAAER--VHAAALLGAVGR-AAPVLTSGGT 218 (368)
T ss_pred HhhhhccceEEeeeecccccccCCcchhhhhhh--hhHHHHhcccCC-ccceeecCCC
Confidence 55544 589999999999775432222211111 122334455676 7888886654
No 54
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.41 E-value=2.1e-11 Score=112.46 Aligned_cols=186 Identities=17% Similarity=0.210 Sum_probs=138.4
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCC-cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeCCC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNP-EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYANPC 108 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~-~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~ 108 (409)
|.+++|++.|++|.+.+++.+. ++++++..|... ++++++.|.+.|+ ++.-+-..|+...+++|.+..-.++-.|+
T Consensus 4 p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P~ 83 (353)
T COG3457 4 PGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSPC 83 (353)
T ss_pred CcEEEeHHHHHHhHHHHHHHHHHcCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCceEeeccc
Confidence 8899999999999999998774 899999999986 9999999999999 78888889999999999875434555676
Q ss_pred CCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-
Q 015304 109 KPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA- 183 (409)
Q Consensus 109 k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~- 183 (409)
+ ++++..+++ +...++.+++-+..+++.+ +..+|+++|..++-. -+.+|+. .+++++.++.+..
T Consensus 84 ~--sei~~vv~~-~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~Dlr------eG~~~~~--~~~l~~~V~eI~~l 152 (353)
T COG3457 84 M--SEIEDVVRK-VDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGDLR------EGQWGFL--IEDLEETVEEIQQL 152 (353)
T ss_pred H--HHHHHHHHh-cCeEEEecHHHHHHHHHHHHHhCcceeEEEEEEccccc------CcchhhH--HHHHHHHHHHHhcC
Confidence 4 577776653 4456788888888887764 567899999874310 1333344 4788888888877
Q ss_pred cCCeEEEEEEeeCCCCC---CHHHHHHHHHHHHHHHHHH-HHcCCCCCcEEeecC
Q 015304 184 SGLSVVGVAFHIGSAAT---KFAAYRGAIAAAKAVFETA-ARLGNNKMRVLDIGG 234 (409)
Q Consensus 184 ~~l~l~Glh~H~gs~~~---~~~~~~~~i~~~~~~~~~~-~~~g~~~~~~ldiGG 234 (409)
+|+++.||-+|+++... .++.+ ..+.+..+.+ +..|+ ++++++-|.
T Consensus 153 kGi~~vGlgTnF~Cfg~v~PTp~n~----~~ll~~~~~lE~~~Gi-~l~~vsagn 202 (353)
T COG3457 153 KGIHLVGLGTNFPCFGDVLPTPENL----ESLLQGKKKLEASSGI-QLKQVSAGN 202 (353)
T ss_pred CCceEEeeecccccccCcCCCcccH----HHHHHHHHHHHHhcCc-eeEEecCCC
Confidence 59999999999987532 23332 2222333333 44598 999998443
No 55
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=98.81 E-value=1.6e-06 Score=79.29 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhC-C-CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCC-CcEEEeCCCCCHHHH
Q 015304 39 LGVVVTLYNQMISKL-P-MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSP-DRIIYANPCKPVSHI 114 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~-~-~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~-~~Ii~~gp~k~~~~i 114 (409)
++.|++++++..... | .+++..+.|..+...|.. +.++|. .|.=.-..|+..=.+. ++. -+-.|-|+.-+ .-+
T Consensus 5 l~~i~~~i~~a~~~r~~~~v~LvaVsK~~~~~~i~~-~~~~G~~~fGENrvQe~~~K~~~-l~~~i~wHfIG~LQ~-NK~ 81 (227)
T cd06822 5 LKRIRQAVKRASKKLPASKPRLVAVSKTKPAELIKE-AYDAGQRHFGENYVQELIEKAPD-LPIDIKWHFIGHLQS-NKV 81 (227)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEECCCCHHHHHH-HHHcCCccccCcHHHHHHHHHHh-ccCCceEEEECCCch-hhH
Confidence 344555554443221 2 589999999998766544 667898 8888888887632221 221 23467799644 567
Q ss_pred HHHHH-cCCcEE-EecCHHHHHHHHhHC------CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHH-H-c
Q 015304 115 KYAAN-VGVNLT-TFDSVEELHKIRKWH------PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAE-A-S 184 (409)
Q Consensus 115 ~~a~~-~gv~~~-~vds~~el~~i~~~~------~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~-~-~ 184 (409)
+.+++ ..+..+ +|||++.++.|.+.+ ...+|+|.||.+.+ .+|.|++ ++++.++++.+. . +
T Consensus 82 k~i~~~~~~~~ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e-------~~K~Gv~--~~e~~~l~~~i~~~~~ 152 (227)
T cd06822 82 KKLLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGE-------ESKSGLE--PSEAVELVKHIIEECP 152 (227)
T ss_pred HHHhccccccEEEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC-------CCCCCCC--HHHHHHHHHHHHhhCC
Confidence 77764 223333 899999999998753 34789999997422 2899999 899999999886 6 5
Q ss_pred CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC-CCcEEeecCC
Q 015304 185 GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARL-GNN-KMRVLDIGGG 235 (409)
Q Consensus 185 ~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~-g~~-~~~~ldiGGG 235 (409)
+|++.||++|.+......+.-....+.+.++.+.+++. |++ .+..|.+|+.
T Consensus 153 ~L~l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS 205 (227)
T cd06822 153 NLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMS 205 (227)
T ss_pred CceEEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEeccc
Confidence 89999999999875431233344555666666666654 551 2578887775
No 56
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=98.43 E-value=5.4e-05 Score=68.03 Aligned_cols=180 Identities=15% Similarity=0.198 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhCC----CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCC---cEEEeCCCCC
Q 015304 39 LGVVVTLYNQMISKLP----MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPD---RIIYANPCKP 110 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~----~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~---~Ii~~gp~k~ 110 (409)
+..+++++++-..... .+++..+.|..+.. .++.+.++|+ .|.=.-..|+..=..+ ++.. .-.|-||.-+
T Consensus 7 l~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~-~I~~~~~aG~r~fGENrvQe~~~K~~~-l~~~~~i~WHfIG~LQs 84 (228)
T COG0325 7 LAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAE-DIREAYEAGQRHFGENRVQEALDKIEA-LKDLPDIEWHFIGPLQS 84 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHH-HHHHHHHcCChhhcchHHHHHHHHHHh-cCcCCCeEEEEechhhh
Confidence 4455666655544432 48899999998755 4567889998 8888878887643333 3322 4556799644
Q ss_pred HHHHHHHHHcCCcEE-EecCHHHHHHHHhHC---C-CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-c
Q 015304 111 VSHIKYAANVGVNLT-TFDSVEELHKIRKWH---P-KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-S 184 (409)
Q Consensus 111 ~~~i~~a~~~gv~~~-~vds~~el~~i~~~~---~-~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~ 184 (409)
.-.+.++++ +..+ ++|++.-+.+|.+.+ + ..++.|.||.+.+ .+|-|++ ++++.++++.++. +
T Consensus 85 -NK~k~v~~~-~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E-------~sK~G~~--~~e~~~~~~~~~~~~ 153 (228)
T COG0325 85 -NKVKLVAEN-FDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISGE-------ESKSGVP--PEELDELAQEVQELP 153 (228)
T ss_pred -hHHHHHHhh-cceeeecCHHHHHHHHHHHHHhCCCCceEEEEEecCCc-------cccCCCC--HHHHHHHHHHHHhCC
Confidence 556777663 3333 899999999986643 2 4789999997422 3899999 9999999999976 6
Q ss_pred CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeec
Q 015304 185 GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIG 233 (409)
Q Consensus 185 ~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiG 233 (409)
+|++.||++-..- ..|++......+.++++.+.+.+... ++..|++|
T Consensus 154 ~L~l~GLM~ipp~-~~d~~~~~~~F~~l~~l~~~l~~~~~-~~~~LSMG 200 (228)
T COG0325 154 NLELRGLMTIPPL-TDDPEEIFAVFRKLRKLFDELKAKYP-PIDELSMG 200 (228)
T ss_pred CCeEeEEEeeCCC-CCCHHHHHHHHHHHHHHHHHHHHhcC-CCCeecCc
Confidence 8999999987744 34666666677777777776666554 67777765
No 57
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5.1.1.1 from EC) plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins contains this domain are found in both prokaryotic and eukaryotic proteins [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus (Geobacillus stearothermophilus) was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strand. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel.; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process; PDB: 3HUR_A 4A3Q_B 3S46_A 1RCQ_A 3CO8_A 1VFT_B 1VFH_A 1VFS_B 2DY3_B 4ECL_C ....
Probab=98.21 E-value=1.8e-06 Score=71.92 Aligned_cols=88 Identities=18% Similarity=0.250 Sum_probs=58.0
Q ss_pred cEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCC
Q 015304 285 AFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAAD 358 (409)
Q Consensus 285 ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D 358 (409)
++++.++|+.+|.. |+ +..|..+..+..+..+++|+++.++ .+++... +. .++++++++|++|| |
T Consensus 1 v~sl~a~i~~v~~v~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~~r--~~~~~~~-v~----i~G~~~pivG~v~M--D 71 (129)
T PF00842_consen 1 VMSLKARIIQVREVPKGETVGYGRTYRAPRDTRIAVVPIGYADGFPR--ALSNGGY-VL----INGKRCPIVGRVCM--D 71 (129)
T ss_dssp -EEEEEEEEEEEEE-TT-EESGGGSEE-SSSEEEEEES--GGGTGGG--GGTTTEE-EE----ETTEEEEEES---S--S
T ss_pred CEEEEEEEEEEEEeCCCCCCcCCCEEECCCCeEEEEEEEEeeCCcCc--ccCCCcE-EE----ECCEEEEEEEEEEe--e
Confidence 47899999999985 33 3467777777788889999999886 4544221 21 25789999999999 9
Q ss_pred ccccCCC-C-CCCCCCCEEEEcCCC
Q 015304 359 EVFSGHK-L-PELEVTDWLVFSEMG 381 (409)
Q Consensus 359 ~l~~~~~-l-p~l~~GD~l~~~~~G 381 (409)
+++.+++ . |++++||.+.+++-.
T Consensus 72 ~~~vdvt~~~~~v~~GD~V~l~G~~ 96 (129)
T PF00842_consen 72 MTMVDVTDIEPDVKVGDEVTLFGRQ 96 (129)
T ss_dssp -EEEEESTSTST--TT-EEEEEECE
T ss_pred EEEEEcCCCCCCCCCCCEEEEECCC
Confidence 9998885 5 689999999998743
No 58
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=96.76 E-value=0.12 Score=45.69 Aligned_cols=179 Identities=18% Similarity=0.256 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhC---C----CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE--EeCCCC
Q 015304 40 GVVVTLYNQMISKL---P----MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII--YANPCK 109 (409)
Q Consensus 40 ~~l~~n~~~~~~~~---~----~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii--~~gp~k 109 (409)
.+|+.-+++++++. | .+++..+.|+.|... +..+.++|- .|.=.-..|++. ++-.=|++|- |.|..-
T Consensus 9 ~~L~~v~~rv~qa~~~~~r~~~~~rlvaVSKtKPa~~-i~~~Y~~GqR~FGENYVQEl~e--Kap~lp~DI~WHFIG~lQ 85 (244)
T KOG3157|consen 9 SALRAVIERVQQAVNQRPRDENAVRLVAVSKTKPASL-IIEAYDAGQRHFGENYVQELIE--KAPLLPDDIKWHFIGHLQ 85 (244)
T ss_pred HHHHHHHHHHHHHHHhccccccceEEEEeecCCcHHH-HHHHHHcCcChhhHHHHHHHHH--hcccCcccceeeeechhh
Confidence 35656566665543 2 578899999988654 455777787 888777788763 3322234554 556643
Q ss_pred CHHHHHHHHH-cCCcEE-EecCHHHHHHHHhH----CC--CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHH
Q 015304 110 PVSHIKYAAN-VGVNLT-TFDSVEELHKIRKW----HP--KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAA 181 (409)
Q Consensus 110 ~~~~i~~a~~-~gv~~~-~vds~~el~~i~~~----~~--~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~ 181 (409)
+ .-+...+. .+...+ +|||+.-...+.+. .+ ..+|.+.||+.. ..+|+|+. +.++.++++.+
T Consensus 86 s-nK~kkl~svpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSG-------Ed~K~Gie--pse~~~l~~~i 155 (244)
T KOG3157|consen 86 S-NKCKKLLSVPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSG-------EDSKSGIE--PSEAPELAEHI 155 (244)
T ss_pred h-cccchhccCCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEeecCC-------ccccCCCC--hhhhHHHHHHH
Confidence 3 23333333 233323 68888888877653 33 457899999731 13899999 99999999998
Q ss_pred HH--cCCeEEEEEEeeCCCC------CCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCC
Q 015304 182 EA--SGLSVVGVAFHIGSAA------TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFS 237 (409)
Q Consensus 182 ~~--~~l~l~Glh~H~gs~~------~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~ 237 (409)
+. .+|++.||++= |+.. .++ .|.. +-.++ -++++++|. +.+-+-+-=|+.
T Consensus 156 ~~~c~nL~f~GlMTI-Gs~~~s~ss~eNp-DF~~-L~~~r--~~ic~~lg~-~~dq~eLSMGMS 213 (244)
T KOG3157|consen 156 KSECKNLKFSGLMTI-GSFDNSHSSGENP-DFQV-LVKLR--ESICKKLGI-PADQVELSMGMS 213 (244)
T ss_pred HHhCCcceeeeeEEe-ccccccccCCCCc-cHHH-HHHHH--HHHHHHhCC-ChHHhhhhcccc
Confidence 66 48999999763 4322 122 2321 11111 135677887 544444444443
No 59
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.29 E-value=0.92 Score=44.04 Aligned_cols=142 Identities=20% Similarity=0.372 Sum_probs=79.6
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCC
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKH 159 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~ 159 (409)
|+|+++..|++ +.|.. .+....+..+.++...++|++. |-|||-.. +.
T Consensus 3 GaDiS~~~~~E---~~G~~----f~~~~G~~~d~~~ilk~~G~N~--------------------vRlRvwv~--P~--- 50 (332)
T PF07745_consen 3 GADISSLPEME---AAGVK----FYDENGQEKDLFQILKDHGVNA--------------------VRLRVWVN--PY--- 50 (332)
T ss_dssp EEE-TTHHHHH---HTT-------B-TTSSB--HHHHHHHTT--E--------------------EEEEE-SS---T---
T ss_pred ceeHHHHHHHH---HcCCe----EECCCCCCCCHHHHHHhcCCCe--------------------EEEEeccC--Cc---
Confidence 78999998876 55642 3333334556677777888874 33454321 10
Q ss_pred CCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCC-------CC-------CCHHHHHHHH-HHHHHHHHHHHHcCC
Q 015304 160 PLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGS-------AA-------TKFAAYRGAI-AAAKAVFETAARLGN 224 (409)
Q Consensus 160 ~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs-------~~-------~~~~~~~~~i-~~~~~~~~~~~~~g~ 224 (409)
. -|.. +.+.+.++++++++.|+++. |-||.+. |. .+.+...+++ .....+++.+++.|.
T Consensus 51 ---~-~g~~-~~~~~~~~akrak~~Gm~vl-ldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~ 124 (332)
T PF07745_consen 51 ---D-GGYN-DLEDVIALAKRAKAAGMKVL-LDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGV 124 (332)
T ss_dssp ---T-TTTT-SHHHHHHHHHHHHHTT-EEE-EEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ---c-cccC-CHHHHHHHHHHHHHCCCeEE-EeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 1 2332 15677888888888999887 8899732 21 1223333333 334667778888999
Q ss_pred CCCcEEeecC----CCCcCCCCCCCHHHHHHHHHHHHHhh
Q 015304 225 NKMRVLDIGG----GFSFTNSNTKSFQEAASIIKEALHAY 260 (409)
Q Consensus 225 ~~~~~ldiGG----G~~~~~~~~~~~~~~~~~i~~~l~~~ 260 (409)
.++++-||. |+-.+.....+++.++..++.+++..
T Consensus 125 -~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AV 163 (332)
T PF07745_consen 125 -TPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAV 163 (332)
T ss_dssp --ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHH
T ss_pred -CccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHH
Confidence 999999998 45444444678888888777554444
No 60
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.62 E-value=3.7 Score=38.75 Aligned_cols=157 Identities=19% Similarity=0.318 Sum_probs=91.8
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCC
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKH 159 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~ 159 (409)
|+|++|+.|++ +.|++ .|.-..+..+.++.+.++||+. |-|||--. ++-
T Consensus 42 GaDis~l~~lE---~~Gvk----f~d~ng~~qD~~~iLK~~GvNy--------------------vRlRvwnd----P~d 90 (403)
T COG3867 42 GADISSLIELE---NSGVK----FFDTNGVRQDALQILKNHGVNY--------------------VRLRVWND----PYD 90 (403)
T ss_pred cccHHHHHHHH---HcCce----EEccCChHHHHHHHHHHcCcCe--------------------EEEEEecC----Ccc
Confidence 77888887776 45542 4444444555566666777763 44565421 111
Q ss_pred CCCCCcCCCCCcccHHHHH---HHHHHcCCeEEEEEEeeCCCCCC------HHHHH----HHHH-----HHHHHHHHHHH
Q 015304 160 PLDSKYGVDHHPQEIVPLL---EAAEASGLSVVGVAFHIGSAATK------FAAYR----GAIA-----AAKAVFETAAR 221 (409)
Q Consensus 160 ~~~srfGi~~~~~~~~~~~---~~~~~~~l~l~Glh~H~gs~~~~------~~~~~----~~i~-----~~~~~~~~~~~ 221 (409)
..++.+|-- ..++...+ ++++..|+++. +-||.+-.-.| +.+|. ++++ ..+..+...++
T Consensus 91 sngn~yggG--nnD~~k~ieiakRAk~~GmKVl-~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~ 167 (403)
T COG3867 91 SNGNGYGGG--NNDLKKAIEIAKRAKNLGMKVL-LDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK 167 (403)
T ss_pred CCCCccCCC--cchHHHHHHHHHHHHhcCcEEE-eeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 124677665 55555544 45555688765 78887432222 33442 1222 23445566777
Q ss_pred cCCCCCcEEeecC----CCCcCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEE
Q 015304 222 LGNNKMRVLDIGG----GFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVIS 275 (409)
Q Consensus 222 ~g~~~~~~ldiGG----G~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 275 (409)
-|+ .+.++-+|. ||--|..+..+|+.++..+.+++.....- .|.+.+++
T Consensus 168 eGi-~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev----~p~ikv~l 220 (403)
T COG3867 168 EGI-LPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV----SPTIKVAL 220 (403)
T ss_pred cCC-CccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc----CCCceEEE
Confidence 898 889998874 66655444458999998888887766432 25555554
No 61
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=91.16 E-value=1.1 Score=39.72 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHcCCeEEEEEEeeCCCCC-------CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCC---CCcCCCC
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHIGSAAT-------KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGG---FSFTNSN 242 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~gs~~~-------~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG---~~~~~~~ 242 (409)
++.++.+.+++.++.+.+++++...... +.+ ..+.++.+.+.++.++.+|. +++.+..| .......
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~---~~i~~~~g~~~~~~~~~~ 103 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGA---KYIVVHSGRYPSGPEDDT 103 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTB---SEEEEECTTESSSTTSSH
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCC---CceeecCcccccccCCCH
Confidence 4667777778889999999998765432 223 55667788888999999876 44555444 2221111
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceee
Q 015304 243 TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFT 282 (409)
Q Consensus 243 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv 282 (409)
+..++.+.+.++.... +..+ .++++.+||-....
T Consensus 104 ~~~~~~~~~~l~~l~~-~a~~-----~gv~i~lE~~~~~~ 137 (213)
T PF01261_consen 104 EENWERLAENLRELAE-IAEE-----YGVRIALENHPGPF 137 (213)
T ss_dssp HHHHHHHHHHHHHHHH-HHHH-----HTSEEEEE-SSSSS
T ss_pred HHHHHHHHHHHHHHHh-hhhh-----hcceEEEecccCcc
Confidence 1233444444433322 2212 15779999876544
No 62
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=90.83 E-value=6.3 Score=37.01 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=18.3
Q ss_pred cccHHHHHHHHHH-cCCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEA-SGLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~l~Glh~H~gs 197 (409)
|+++.++++.+++ .++. .|+|+|---
T Consensus 169 P~~v~~~~~~~~~~~~~~-i~~H~Hn~~ 195 (262)
T cd07948 169 PRQVYELVRTLRGVVSCD-IEFHGHNDT 195 (262)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEECCCC
Confidence 7888888888765 3544 488888643
No 63
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=89.48 E-value=3.2 Score=39.92 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=61.5
Q ss_pred EecCHHHHHHHHhHCCCCeE-EEEEecCC---CCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCC--
Q 015304 126 TFDSVEELHKIRKWHPKCDL-LIRIKPPD---DSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAA-- 199 (409)
Q Consensus 126 ~vds~~el~~i~~~~~~~~v-~lRv~~~~---~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~-- 199 (409)
...|+..|.++.+.....+| ..|++... .+|..+..+...-.. .+++.++-+.+++.+++ +.+|.+...
T Consensus 43 ~~~Nl~~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~--~~~~~~~g~~~~~~~ir---ls~Hp~y~inL 117 (303)
T PRK02308 43 ALSNLENLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPF--KEELREIGEFIKEHNIR---LSFHPDQFVVL 117 (303)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCC--HHHHHHHHHHHHHcCCC---eeccChhhhcC
Confidence 34566666766665432233 56887633 223221112222233 45566666666667774 568865321
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHcCCCC---CcEEeecCCC
Q 015304 200 --TKFAAYRGAIAAAKAVFETAARLGNNK---MRVLDIGGGF 236 (409)
Q Consensus 200 --~~~~~~~~~i~~~~~~~~~~~~~g~~~---~~~ldiGGG~ 236 (409)
.+++.+...++.+..-++.+..+|. + .-+++.||..
T Consensus 118 ~S~~~ev~e~Si~~L~~~~~~~~~lG~-~~~~~vViHpG~~~ 158 (303)
T PRK02308 118 NSPKPEVVENSIKDLEYHAKLLDLMGI-DDSSKINIHVGGAY 158 (303)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEECCCccC
Confidence 2556667778888888888889998 6 5567878854
No 64
>PRK01060 endonuclease IV; Provisional
Probab=89.46 E-value=3.5 Score=38.82 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=57.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCC----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSA----ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSF 246 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~----~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~ 246 (409)
++++.++-+.+++.++++.++..|..-. ..+.+....+++.+++.++.++++|. +.-.++.|. ... ...-
T Consensus 46 ~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga-~~vv~h~G~--~~~---~~~~ 119 (281)
T PRK01060 46 ELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGA-KLLVFHPGS--HLG---DIDE 119 (281)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEEcCCc--CCC---CCcH
Confidence 5667777777778899877777776421 23556666778889999999999987 543444333 111 1111
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 247 QEAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 247 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
++..+.+.+.+++..... .+++|.+|+
T Consensus 120 ~~~~~~~~e~l~~l~~~~----~gv~l~iEn 146 (281)
T PRK01060 120 EDCLARIAESLNEALDKT----QGVTIVLEN 146 (281)
T ss_pred HHHHHHHHHHHHHHHhcC----CCCEEEEec
Confidence 223333344444432221 358899997
No 65
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.88 E-value=8.8 Score=35.67 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=82.3
Q ss_pred cEEEEeHHHHHHHHHHHHHh-CCCcceEEecCc------CCcHHHHHHHHHcC--CcE--EEcC-HHHHHHHHhCCCCCC
Q 015304 33 PFYILDLGVVVTLYNQMISK-LPMIHPHYAVKC------NPEPALLEALAALG--SNF--DCAS-RSEIEAVLALGVSPD 100 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~-~~~~~i~yavKa------n~~~~vl~~l~~~G--~g~--~vaS-~~E~~~a~~~G~~~~ 100 (409)
+...++.+...+-++.+.+. .+.+++.+.... .....+++.+.+.+ ..+ -+.+ ..+++.+.++|++.=
T Consensus 12 ~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i 91 (265)
T cd03174 12 EGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEV 91 (265)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEE
Confidence 44455777777777777653 233444444433 33566778887766 433 2333 778888899987543
Q ss_pred cEEEeCC--------CCC--------HHHHHHHHHcCCcE-EEe-------cCHHHHHHHHhHCCCCeE-EEEEecCCCC
Q 015304 101 RIIYANP--------CKP--------VSHIKYAANVGVNL-TTF-------DSVEELHKIRKWHPKCDL-LIRIKPPDDS 155 (409)
Q Consensus 101 ~Ii~~gp--------~k~--------~~~i~~a~~~gv~~-~~v-------ds~~el~~i~~~~~~~~v-~lRv~~~~~~ 155 (409)
+|.+.+. .++ .+.++.+.+.|..+ +++ .+.+++..+.+...+..+ .+++. +
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~--D-- 167 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK--D-- 167 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec--h--
Confidence 3333333 011 12344456677742 233 455556555443322111 23332 1
Q ss_pred CCCCCCCCCcCCCCCcccHHHHHHHHHHc-CCeEEEEEEeeCC
Q 015304 156 GAKHPLDSKYGVDHHPQEIVPLLEAAEAS-GLSVVGVAFHIGS 197 (409)
Q Consensus 156 ~~~~~~~srfGi~~~~~~~~~~~~~~~~~-~l~l~Glh~H~gs 197 (409)
+ .|.. .|+++.++++.+++. +-...|+|+|-.-
T Consensus 168 -----t---~G~~-~P~~v~~li~~l~~~~~~~~~~~H~Hn~~ 201 (265)
T cd03174 168 -----T---VGLA-TPEEVAELVKALREALPDVPLGLHTHNTL 201 (265)
T ss_pred -----h---cCCc-CHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 1 3332 188999999988663 3145678888643
No 66
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=84.57 E-value=33 Score=31.62 Aligned_cols=24 Identities=0% Similarity=0.245 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs 197 (409)
.+++.++++.+..++ .|+.+-++.
T Consensus 157 ~~~~~~li~~v~~~~---~~i~~D~~h 180 (254)
T TIGR03234 157 TEQALAVIDDVGREN---LKLQYDLYH 180 (254)
T ss_pred HHHHHHHHHHhCCCC---EeEeeehhh
Confidence 566666665553333 455555544
No 67
>PRK12677 xylose isomerase; Provisional
Probab=83.67 E-value=9.5 Score=37.98 Aligned_cols=100 Identities=27% Similarity=0.293 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCeEEEEEE----ee----CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCC
Q 015304 174 IVPLLEAAEASGLSVVGVAF----HI----GS-AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTK 244 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~----H~----gs-~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~ 244 (409)
+.++.+.+++.||++.++.. |. |+ ...+.+.-..+++.+++.++.++++|. +.-.+. +|.-+..+....
T Consensus 69 ~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa-~~Vvv~-~G~~g~~~~~~~ 146 (384)
T PRK12677 69 IKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGA-KTYVMW-GGREGAEYDAAK 146 (384)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CEEEEe-eCCCCccCcccC
Confidence 55666667778999888732 21 22 122444445668889999999999987 433333 332222222233
Q ss_pred CHHHHHHHHHHHHHh---hCCCCCCCCCCcEEEEcCC
Q 015304 245 SFQEAASIIKEALHA---YFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 245 ~~~~~~~~i~~~l~~---~~~~~~~~~~~~~l~~EpG 278 (409)
++++..+...+.|.+ |..+.+ .++++.+||=
T Consensus 147 d~~~a~~~~~eaL~~l~~~A~~~G---~gV~laIEpk 180 (384)
T PRK12677 147 DVRAALDRYREAIDLLAAYVKDQG---YDLRFALEPK 180 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEccC
Confidence 444444444433333 322111 2488999985
No 68
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=82.18 E-value=18 Score=30.28 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcC
Q 015304 174 IVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFT 239 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~ 239 (409)
.+++++.+++.+..+.|++...++... .+.++.+.+++.|. .-..+=+||+..++
T Consensus 41 ~e~~v~aa~~~~adiVglS~l~~~~~~----------~~~~~~~~l~~~gl-~~~~vivGG~~vi~ 95 (134)
T TIGR01501 41 QEEFIKAAIETKADAILVSSLYGHGEI----------DCKGLRQKCDEAGL-EGILLYVGGNLVVG 95 (134)
T ss_pred HHHHHHHHHHcCCCEEEEecccccCHH----------HHHHHHHHHHHCCC-CCCEEEecCCcCcC
Confidence 456677777788999999888876431 13345556677776 33446667776654
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.33 E-value=13 Score=34.81 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=58.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEEE--eeCC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC--CCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAF--HIGS--AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS--NTK 244 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~--H~gs--~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~--~~~ 244 (409)
.+++.++.+.+++.||.+.++.+ |..- ...+.+...+.++.++++++.++.+|. +++.++|+ ...+. ...
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~---~~v~~~~~-~~~~~~~~~~ 126 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGI---RTIQLAGY-DVYYEEKSEE 126 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCC---CEEEECCc-ccccccccHH
Confidence 56677777788889999987743 2111 123556666778888999999999986 44555543 11111 112
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 245 SFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 245 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.++.+.+.+++.. ++... .++++.+|+-
T Consensus 127 ~~~~~~~~l~~l~-~~a~~-----~gv~l~lE~~ 154 (284)
T PRK13210 127 TRQRFIEGLAWAV-EQAAA-----AQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHH-HHHHH-----hCCEEEEEec
Confidence 3444444444433 22222 2688999984
No 70
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.42 E-value=16 Score=34.26 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=59.2
Q ss_pred cCCCCCcccHHHHHHHHHHcCCeEEEEEE--eeCC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCC
Q 015304 165 YGVDHHPQEIVPLLEAAEASGLSVVGVAF--HIGS--AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTN 240 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~~~l~l~Glh~--H~gs--~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~ 240 (409)
.+.+ ++++.++.+.+++.|+.+.++.+ |..- ...+.+...+.++.+++.++.++.+|. +++.++|+-. .+
T Consensus 52 ~~~~--~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~---~~i~~~~~~~-~~ 125 (283)
T PRK13209 52 LDWS--REQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGI---RVIQLAGYDV-YY 125 (283)
T ss_pred cCCC--HHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCC---CEEEECCccc-cc
Confidence 3445 66777777788888999987653 3211 112444555677888889999999986 3566665421 11
Q ss_pred CC--CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 241 SN--TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 241 ~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.. +..++.+.+.+++... +... .++++.+|+.
T Consensus 126 ~~~~~~~~~~~~~~l~~l~~-~A~~-----~GV~i~iE~~ 159 (283)
T PRK13209 126 EQANNETRRRFIDGLKESVE-LASR-----ASVTLAFEIM 159 (283)
T ss_pred cccHHHHHHHHHHHHHHHHH-HHHH-----hCCEEEEeec
Confidence 11 1223334444443322 2222 2578999985
No 71
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=77.79 E-value=39 Score=27.99 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcC
Q 015304 174 IVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFT 239 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~ 239 (409)
.+++++.+.+.+..+.|++...++... .+.++.+.+++.|... -.+=+||+..++
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~~~~----------~~~~~~~~l~~~gl~~-v~vivGG~~~i~ 93 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGEI----------DCKGLREKCDEAGLKD-ILLYVGGNLVVG 93 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccCCHH----------HHHHHHHHHHHCCCCC-CeEEEECCCCCC
Confidence 456677777788999999888876531 1334555666677634 345668887665
No 72
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=77.76 E-value=5.5 Score=38.44 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhcCCCCCccEEEE-------eHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHH
Q 015304 15 LTEFVRSTILKRQEFDEVPFYIL-------DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRS 87 (409)
Q Consensus 15 ~~~~~~~~~~~~~~~~t~P~~v~-------d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~ 87 (409)
+..+++.... ..+- |+.|. |.+.|+.-++..+.. +. +.+++-......++....+.|+.+-+.|+.
T Consensus 112 ~~~~Vk~V~e---avd~-PL~Id~s~n~~kD~evleaale~~~g~--~p-LInSat~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 112 AAKTVEEVLQ---AVDV-PLIIGGSGNPEKDAEVLEKVAEAAEGE--RC-LLGSAEEDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHH---hCCC-CEEEecCCCCCCCHHHHHHHHHHhCCC--CC-EEEECCHHHHHHHHHHHHHhCCeEEEEcHH
Confidence 5555555443 4666 99887 788888877766532 22 555655544678999999999998888877
Q ss_pred HHHHHHh-------CCCCCCcEEEeCCC
Q 015304 88 EIEAVLA-------LGVSPDRIIYANPC 108 (409)
Q Consensus 88 E~~~a~~-------~G~~~~~Ii~~gp~ 108 (409)
++..+.+ +|+++++|++....
T Consensus 185 Dln~ak~L~~~l~~~Gi~~edIviDP~~ 212 (319)
T PRK04452 185 DINLAKQLNILLTELGVPRERIVMDPTT 212 (319)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEeCCc
Confidence 7665544 69999999987653
No 73
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=76.37 E-value=26 Score=32.92 Aligned_cols=101 Identities=12% Similarity=0.161 Sum_probs=59.3
Q ss_pred cCCCCCcccHHHHHHHHHHcCCeEEEEEEee--C--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCC
Q 015304 165 YGVDHHPQEIVPLLEAAEASGLSVVGVAFHI--G--SAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTN 240 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~--g--s~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~ 240 (409)
.+.+ .++..++.+.+++.++++.++.+-. . -...+.+...+.++.+++.++.++.+|. + .+-++|+- ..+
T Consensus 47 ~~~~--~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~-~--~v~~~~~~-~~~ 120 (279)
T TIGR00542 47 LDWS--REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGI-R--TIQLAGYD-VYY 120 (279)
T ss_pred cCCC--HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCC-C--EEEecCcc-ccc
Confidence 4445 6777778788888999998875311 0 1122455566678888889999999987 3 44455431 111
Q ss_pred C--CCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 241 S--NTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 241 ~--~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
. ....++.+.+.+++... +... .++++.+|+
T Consensus 121 ~~~~~~~~~~~~~~l~~l~~-~A~~-----~Gv~l~lE~ 153 (279)
T TIGR00542 121 EEHDEETRRRFREGLKEAVE-LAAR-----AQVTLAVEI 153 (279)
T ss_pred CcCCHHHHHHHHHHHHHHHH-HHHH-----cCCEEEEee
Confidence 1 11234445555544332 3222 257899995
No 74
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=76.19 E-value=67 Score=29.90 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHH-cCCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEA-SGLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~l~Glh~H~gs 197 (409)
|+++.+++..+++ .++ -.|+|+|---
T Consensus 167 P~~v~~lv~~l~~~~~~-~l~~H~Hn~~ 193 (259)
T cd07939 167 PFTTYELIRRLRAATDL-PLEFHAHNDL 193 (259)
T ss_pred HHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 7888888888865 355 4589999743
No 75
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=76.10 E-value=15 Score=33.51 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEe--CCCCCHHHHHHHHHcCCcEEEec---CHHHHHHHHhHCC
Q 015304 68 PALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYA--NPCKPVSHIKYAANVGVNLTTFD---SVEELHKIRKWHP 141 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~--gp~k~~~~i~~a~~~gv~~~~vd---s~~el~~i~~~~~ 141 (409)
...++.+.+.|+ |+-|++++.+..+++.+.+ -+|+.. -+..+...++...+.|+..+++. |++|+..|.+..+
T Consensus 5 ~~~l~~l~~~g~dgi~v~~~g~~~~~k~~~~~-~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~~ 83 (233)
T PF01136_consen 5 EKYLDKLKELGVDGILVSNPGLLELLKELGPD-LKIIADYSLNVFNSESARFLKELGASRITLSPELSLEEIKEIAENSP 83 (233)
T ss_pred HHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCC-CcEEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHHhCC
Confidence 457788889999 9999999999999999643 345544 34567788999999999766665 5677777766654
Q ss_pred CCeEEEEEe
Q 015304 142 KCDLLIRIK 150 (409)
Q Consensus 142 ~~~v~lRv~ 150 (409)
..++-+-|+
T Consensus 84 ~~~~Ev~v~ 92 (233)
T PF01136_consen 84 GVPLEVIVH 92 (233)
T ss_pred CCeEEEEEe
Confidence 344444444
No 76
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=76.08 E-value=65 Score=30.17 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=20.4
Q ss_pred cCCCCCcccHHHHHHHHHHc-C---CeEEEEEEeeCC
Q 015304 165 YGVDHHPQEIVPLLEAAEAS-G---LSVVGVAFHIGS 197 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~~-~---l~l~Glh~H~gs 197 (409)
+|.- .|+++.++++.+++. + + ..|+|+|-.-
T Consensus 166 ~G~~-~P~~v~~lv~~l~~~~~~~~i-~l~~H~Hn~~ 200 (268)
T cd07940 166 VGYL-TPEEFGELIKKLKENVPNIKV-PISVHCHNDL 200 (268)
T ss_pred CCCC-CHHHHHHHHHHHHHhCCCCce-eEEEEecCCc
Confidence 4543 278888888888663 3 3 4488888643
No 77
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=75.95 E-value=14 Score=36.91 Aligned_cols=57 Identities=11% Similarity=0.270 Sum_probs=38.6
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCC---cHHHHHHHHHcCC---cEEEcCHHH
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNP---EPALLEALAALGS---NFDCASRSE 88 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~~E 88 (409)
|| |.+ ++.+.|.+-++.+++.++- ...-.++=+|| +...++.|++.|+ .+.|-|..+
T Consensus 75 GT-ps~-l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d 138 (400)
T PRK07379 75 GT-PSL-LSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQD 138 (400)
T ss_pred Cc-ccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCH
Confidence 46 654 3889999999999988751 11234455676 5788999999986 455555433
No 78
>PRK00208 thiG thiazole synthase; Reviewed
Probab=75.59 E-value=67 Score=29.81 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=68.1
Q ss_pred eccccHHHHHHHHHhhcCCCCCccEE---EEe-----HHHHHHHHHHHHHhCC-CcceE-EecCcCCcHHHHHHHHHcCC
Q 015304 10 VTKEELTEFVRSTILKRQEFDEVPFY---ILD-----LGVVVTLYNQMISKLP-MIHPH-YAVKCNPEPALLEALAALGS 79 (409)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~t~P~~---v~d-----~~~l~~n~~~~~~~~~-~~~i~-yavKan~~~~vl~~l~~~G~ 79 (409)
++|.+.+|.|+.--...+-.++ +|. |+. ++.+.+.+++.+.... ++.++ | |+.++..++.|.+.|+
T Consensus 70 aG~~ta~eAv~~a~lare~~~~-~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpy---c~~d~~~ak~l~~~G~ 145 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGT-NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPY---CTDDPVLAKRLEEAGC 145 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCC-CeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEE---eCCCHHHHHHHHHcCC
Confidence 6678888887633222233455 553 111 3334555555544432 55555 3 4677888999988876
Q ss_pred cEE------------EcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 80 NFD------------CASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 80 g~~------------vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
.+- ++.++-++.+++. .+ -.++..|...++++...|++.|..-+.+.
T Consensus 146 ~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~-vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 146 AAVMPLGAPIGSGLGLLNPYNLRIIIEQ-AD-VPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CEeCCCCcCCCCCCCCCCHHHHHHHHHh-cC-CeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 332 3355556666664 22 35788888888899999998888644443
No 79
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.39 E-value=23 Score=33.05 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=56.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCC---C--CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCc-CCCCCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGS---A--ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSF-TNSNTK 244 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs---~--~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~-~~~~~~ 244 (409)
.+++.++.+.+++.++++.++..+.++ . ..+.....+.++.+++.++.++.+|. + .|-+..|... ....+.
T Consensus 46 ~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa-~--~i~~~~~~~~~~~~~~~ 122 (275)
T PRK09856 46 AGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNA-G--YTLISAAHAGYLTPPNV 122 (275)
T ss_pred chHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCC-C--EEEEcCCCCCCCCCHHH
Confidence 345667767777889999887653221 1 12344555677888888999999987 3 3444333221 101112
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 245 SFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 245 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.++.+.+.+++. .++... .++++.+||-
T Consensus 123 ~~~~~~~~l~~l-~~~a~~-----~gv~l~iE~~ 150 (275)
T PRK09856 123 IWGRLAENLSEL-CEYAEN-----IGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHH-HHHHHH-----cCCEEEEecC
Confidence 344444444432 333322 2688999983
No 80
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=74.90 E-value=9.2 Score=28.10 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=45.0
Q ss_pred EEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCC--CCcCCCCCcccHHHHHHHHHHcCCeEEEEEE
Q 015304 124 LTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLD--SKYGVDHHPQEIVPLLEAAEASGLSVVGVAF 193 (409)
Q Consensus 124 ~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~--srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~ 193 (409)
+++++|..+.-+..+..++.++-.|+-|-. . .+..+ -=+-++ .++...+.+.+++.++.+.|++.
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P-~--~i~~~CG~al~~~--~~d~~~i~~~l~~~~i~~~~iy~ 71 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTP-R--EISAGCGLALRFE--PEDLEKIKEILEENGIEYEGIYE 71 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCC-h--hccCCCCEEEEEC--hhhHHHHHHHHHHCCCCeeEEEE
Confidence 478999999999988877777777887621 1 11111 112233 67778888888889999999873
No 81
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=74.65 E-value=82 Score=31.06 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=18.7
Q ss_pred cccHHHHHHHHHHc-CCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEAS-GLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~-~l~l~Glh~H~gs 197 (409)
|+++.++++.+++. ++ ..|+|+|--.
T Consensus 169 P~~v~~li~~l~~~~~~-~l~~H~Hnd~ 195 (363)
T TIGR02090 169 PQKMEELIKKLKENVKL-PISVHCHNDF 195 (363)
T ss_pred HHHHHHHHHHHhcccCc-eEEEEecCCC
Confidence 78888888888653 43 4688888643
No 82
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=74.51 E-value=16 Score=32.33 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEe------CCC--C--CHHHHHHHHHcCCcEE---EecC
Q 015304 65 NPEPALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYA------NPC--K--PVSHIKYAANVGVNLT---TFDS 129 (409)
Q Consensus 65 n~~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~------gp~--k--~~~~i~~a~~~gv~~~---~vds 129 (409)
-....+++.+++.+. =+||+|.+|+..+.++|++ ++=+ ... . +-+.++...+.++.++ .+.+
T Consensus 79 ~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D---~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~t 155 (192)
T PF04131_consen 79 ETLEELIREIKEKYQLVMADISTLEEAINAAELGFD---IIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIHT 155 (192)
T ss_dssp S-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-S---EEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--S
T ss_pred cCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCC---EEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCCC
Confidence 346788898998886 7899999999999999973 3321 111 1 1134455555665432 3577
Q ss_pred HHHHHHHHhHC
Q 015304 130 VEELHKIRKWH 140 (409)
Q Consensus 130 ~~el~~i~~~~ 140 (409)
.+++.+..+..
T Consensus 156 pe~a~~al~~G 166 (192)
T PF04131_consen 156 PEQAAKALELG 166 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 77777776654
No 83
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=73.45 E-value=71 Score=30.94 Aligned_cols=94 Identities=13% Similarity=0.237 Sum_probs=67.4
Q ss_pred CCCccEEEEeH-----HHHHHHHHHHHHhCCCcceEEecCcC-CcHHHHHHHHHcCC-cEEEcC----------------
Q 015304 29 FDEVPFYILDL-----GVVVTLYNQMISKLPMIHPHYAVKCN-PEPALLEALAALGS-NFDCAS---------------- 85 (409)
Q Consensus 29 ~~t~P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKan-~~~~vl~~l~~~G~-g~~vaS---------------- 85 (409)
..+ -+.++|. ..+.+.++.+++.+|... .+|-| ...+.++.|.+.|+ ++.|+.
T Consensus 107 ~~~-d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~---vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~ 182 (321)
T TIGR01306 107 LTP-EYITIDIAHGHSNSVINMIKHIKTHLPDSF---VIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGT 182 (321)
T ss_pred CCC-CEEEEeCccCchHHHHHHHHHHHHhCCCCE---EEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCC
Confidence 335 7888999 889999999999987532 34443 47889999999998 787761
Q ss_pred ----HHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 86 ----RSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 86 ----~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
+.=+..+.++ .+ -.|+..|..++..++..|+..|...+.+.
T Consensus 183 ~~~~l~ai~ev~~a-~~-~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 183 GGWQLAALRWCAKA-AR-KPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CchHHHHHHHHHHh-cC-CeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 1111222222 12 36899999999999999999998765555
No 84
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=73.38 E-value=80 Score=29.46 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHHc-CCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEAS-GLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~-~l~l~Glh~H~gs 197 (409)
|+++.++++.+++. +....|+|+|---
T Consensus 169 P~~v~~lv~~l~~~~~~~~l~~H~Hn~~ 196 (263)
T cd07943 169 PDDVRERVRALREALDPTPVGFHGHNNL 196 (263)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCc
Confidence 88999999988663 5436789998643
No 85
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=73.34 E-value=94 Score=30.48 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCC-cEEEcC------------HHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcE
Q 015304 68 PALLEALAALGS-NFDCAS------------RSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL 124 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS------------~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~ 124 (409)
..+++.|.+.|+ .+||.| ..|+....+.. ...++...-+ ..++++.|++.|+..
T Consensus 71 i~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~-~~~~~~~l~~--n~~die~A~~~g~~~ 137 (347)
T PLN02746 71 VELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNL-EGARFPVLTP--NLKGFEAAIAAGAKE 137 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhc-cCCceeEEcC--CHHHHHHHHHcCcCE
Confidence 577888888887 777764 12333222221 1123322223 567888888887753
No 86
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=73.12 E-value=81 Score=29.41 Aligned_cols=85 Identities=19% Similarity=0.106 Sum_probs=48.9
Q ss_pred CHHHHHHHHHcCCcEE-EecCHHHHHHHH---hHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcC
Q 015304 110 PVSHIKYAANVGVNLT-TFDSVEELHKIR---KWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASG 185 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~-~vds~~el~~i~---~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~ 185 (409)
..++++.|.+.|+..+ .+.+.++.+.+. +.+++....++++..+ . +-.+ ++.+.++++.+.+.+
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~--------~--~~~~--~~~~~~~~~~~~~~G 154 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMM--------S--HMAS--PEELAEQAKLMESYG 154 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEe--------c--cCCC--HHHHHHHHHHHHHcC
Confidence 3688999999998743 445555544443 3344444555666411 1 1245 778888888887777
Q ss_pred CeEEEEEEeeCCCCCCHHHHHHH
Q 015304 186 LSVVGVAFHIGSAATKFAAYRGA 208 (409)
Q Consensus 186 l~l~Glh~H~gs~~~~~~~~~~~ 208 (409)
.....|-=..|. ..+....+.
T Consensus 155 ~d~i~l~DT~G~--~~P~~v~~l 175 (263)
T cd07943 155 ADCVYVTDSAGA--MLPDDVRER 175 (263)
T ss_pred CCEEEEcCCCCC--cCHHHHHHH
Confidence 766555333333 345544333
No 87
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=73.11 E-value=41 Score=34.60 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=63.1
Q ss_pred cEEEEeHH-----HHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc---------------------C
Q 015304 33 PFYILDLG-----VVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA---------------------S 85 (409)
Q Consensus 33 P~~v~d~~-----~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va---------------------S 85 (409)
..+++|.. .+.+.++.+++.+|+..+. ++.-.+.+-++.+.++|+ .+.|. +
T Consensus 242 dvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi--~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~ 319 (486)
T PRK05567 242 DVLVVDTAHGHSEGVLDRVREIKAKYPDVQII--AGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITA 319 (486)
T ss_pred CEEEEECCCCcchhHHHHHHHHHhhCCCCCEE--EeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHH
Confidence 55667654 5777788888888765443 366667888888888887 66652 2
Q ss_pred HHHHHHHH-hCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 86 RSEIEAVL-ALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 86 ~~E~~~a~-~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
..|+..+. +.|+ .|+..|...+..++..|+..|...+.+.+.
T Consensus 320 ~~~~~~~~~~~~~---~viadGGi~~~~di~kAla~GA~~v~~G~~ 362 (486)
T PRK05567 320 IADAAEAAKKYGI---PVIADGGIRYSGDIAKALAAGASAVMLGSM 362 (486)
T ss_pred HHHHHHHhccCCC---eEEEcCCCCCHHHHHHHHHhCCCEEEECcc
Confidence 33333322 2343 578888888889999999988876666654
No 88
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=72.59 E-value=83 Score=31.23 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHc-CCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEAS-GLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~-~l~l~Glh~H~gs 197 (409)
|+++.++++.+++. ++. .|+|+|-..
T Consensus 173 P~~v~~lv~~l~~~~~~~-l~~H~Hnd~ 199 (378)
T PRK11858 173 PFTMYELVKELVEAVDIP-IEVHCHNDF 199 (378)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEecCCc
Confidence 78899988887653 553 588888644
No 89
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=72.32 E-value=59 Score=32.26 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEEE----ee----CCCC-CCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEee--cCCCCcCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAF----HI----GSAA-TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDI--GGGFSFTN 240 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~----H~----gs~~-~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldi--GGG~~~~~ 240 (409)
+++.++.+.+++.|+.+.++-. |- ||-. .|++.-..+++.+++.+++++++|- +. |++ |-|+..+
T Consensus 69 ~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa-~~--I~iW~~DG~~~~- 144 (378)
T TIGR02635 69 EDYEELARYAEELGLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS-KD--ISLWLADGTNYP- 144 (378)
T ss_pred cCHHHHHHHHHHcCCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-Ce--EEEecCCcCcCC-
Confidence 4566777777888888886432 33 5433 3455455788889999999999986 42 343 3343322
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 241 SNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 241 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
...++....+.+.+.|.+.+... .+++++.+||
T Consensus 145 -g~~~~~~a~~rl~esL~eI~~~~---~~~v~~~iE~ 177 (378)
T TIGR02635 145 -GQDDFRSRKDRLEESLAEVYEHL---GADMRLLIEY 177 (378)
T ss_pred -cccCHHHHHHHHHHHHHHHHHhC---cCCCEEEEec
Confidence 11234443344555555554221 1478899976
No 90
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=72.28 E-value=46 Score=33.45 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=57.3
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCC----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSA----ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSF 246 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~----~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~ 246 (409)
.+++.++.+.+++.++.+.-+..|..-- ..+.+.+...++.+.+-++.+.++|. ..-+++-|...+.. ..+..+
T Consensus 175 ~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LGa-~~VV~HPGs~~~~~-~~ee~i 252 (413)
T PTZ00372 175 DETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLGI-KLYNFHPGSTVGQC-SKEEGI 252 (413)
T ss_pred HHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEECCCcCCCCC-CHHHHH
Confidence 5677777777788887765565665321 23566677778888888888999987 55555555432211 001134
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcEEEEc
Q 015304 247 QEAASIIKEALHAYFPNELLPGSSLRVISE 276 (409)
Q Consensus 247 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~E 276 (409)
+.+++.|.+.+. .. .++.+.+|
T Consensus 253 ~~i~e~L~~~la----~~----~gV~IlLE 274 (413)
T PTZ00372 253 KNIADCINKAHE----ET----KSVIIVLE 274 (413)
T ss_pred HHHHHHHHHHHh----Cc----CCCEEEEe
Confidence 444444444332 21 34778888
No 91
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.11 E-value=39 Score=31.75 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeCC----CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHH
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIGS----AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQ 247 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~gs----~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~ 247 (409)
+++.++.+.+++.++.+..+..|..- ...+.+.....++.+.+.++.++.+|. +.-+++-|- .... ..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~i~~A~~lga-~~vv~H~G~--~~~~----~~e 118 (274)
T TIGR00587 46 EVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEELKRCELLGI-MLYNFHPGS--ALKC----SEE 118 (274)
T ss_pred HHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEECCCC--CCCC----CHH
Confidence 44444445556666654444445221 223566667788889999999999987 544444333 2211 223
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCcEEEEc--CCc
Q 015304 248 EAASIIKEALHAYFPNELLPGSSLRVISE--PGR 279 (409)
Q Consensus 248 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~E--pGR 279 (409)
+..+.+.+.|.+.+... .+++|.+| ||.
T Consensus 119 ~~~~~~~~~l~~l~~~~----~~v~l~lEN~~~~ 148 (274)
T TIGR00587 119 EGLDNLIESLNVVIKET----KIVTILLENMAGQ 148 (274)
T ss_pred HHHHHHHHHHHHHHhcc----CCCEEEEEeCCCC
Confidence 33344444444443221 24779999 553
No 92
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=71.98 E-value=70 Score=32.58 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=63.8
Q ss_pred cEEEEeH-----HHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc--------C-------------
Q 015304 33 PFYILDL-----GVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA--------S------------- 85 (409)
Q Consensus 33 P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va--------S------------- 85 (409)
-..++|. ..+.+.++++++.+|+..+. ++.-.+++-++.+.++|+ .+.|. +
T Consensus 238 d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi--~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~ 315 (450)
T TIGR01302 238 DVIVIDSSHGHSIYVIDSIKEIKKTYPDLDII--AGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITA 315 (450)
T ss_pred CEEEEECCCCcHhHHHHHHHHHHHhCCCCCEE--EEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHH
Confidence 5666666 56777888888888765443 355567888888888888 55543 1
Q ss_pred HHHHHH-HHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 86 RSEIEA-VLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 86 ~~E~~~-a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
..|+.. +.+.++ .|+-.|..++..++..|+..|...+.+.+.
T Consensus 316 i~~~~~~~~~~~v---pviadGGi~~~~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 316 VYDVAEYAAQSGI---PVIADGGIRYSGDIVKALAAGADAVMLGSL 358 (450)
T ss_pred HHHHHHHHhhcCC---eEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 133332 223454 488888889999999999999876777754
No 93
>PRK15452 putative protease; Provisional
Probab=71.83 E-value=1.2e+02 Score=30.90 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=72.5
Q ss_pred EeHHHHHHHHHHHHHhCCCcceEEecCcCC-------cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEe--C
Q 015304 37 LDLGVVVTLYNQMISKLPMIHPHYAVKCNP-------EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYA--N 106 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~~~i~yavKan~-------~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~--g 106 (409)
++.+.|++.++..++ .+.++++++=.-+ ....++.+.+.|+ ++-|++++.+..+++.. +.-+|+.. -
T Consensus 43 f~~edl~eav~~ah~--~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~~-p~l~ih~stql 119 (443)
T PRK15452 43 FNHENLALGINEAHA--LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVREHF-PEMPIHLSVQA 119 (443)
T ss_pred CCHHHHHHHHHHHHH--cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhC-CCCeEEEEecc
Confidence 455667777766554 3567776633333 1233566668888 99999999999999874 22345544 3
Q ss_pred CCCCHHHHHHHHHcCCcEEEec---CHHHHHHHHhHCCCCeEEEEEe
Q 015304 107 PCKPVSHIKYAANVGVNLTTFD---SVEELHKIRKWHPKCDLLIRIK 150 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vd---s~~el~~i~~~~~~~~v~lRv~ 150 (409)
+..+...+++..+.|+..+++. |++|++.|.+..+..++-+-|+
T Consensus 120 ni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~~~~~~~elEvfVH 166 (443)
T PRK15452 120 NAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQCPDMELEVFVH 166 (443)
T ss_pred cCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHHhhCCCCCEEEEEE
Confidence 4567788888899999777665 5667776654444444444454
No 94
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=71.46 E-value=60 Score=32.04 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCC-cEEE----cCHHHHH---HHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEe-cCHHH------
Q 015304 68 PALLEALAALGS-NFDC----ASRSEIE---AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF-DSVEE------ 132 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~v----aS~~E~~---~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~v-ds~~e------ 132 (409)
..+++.|.+.|+ .+|| +|..|.+ .+.+.+.+ .++.-... -..++++.|++.|+..+.+ .+.++
T Consensus 25 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~-~~v~~~~r-~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~ 102 (363)
T TIGR02090 25 VEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLN-AEICSLAR-ALKKDIDKAIDCGVDSIHTFIATSPIHLKYK 102 (363)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCC-cEEEEEcc-cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHH
Confidence 567777888887 6676 4455553 33334543 34443333 2467888888888754422 22222
Q ss_pred -----------HHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCC
Q 015304 133 -----------LHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATK 201 (409)
Q Consensus 133 -----------l~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~ 201 (409)
+....+.+++....++++..+ .+| .+ ++.+.++++.+.+.+..-..+.=..|...
T Consensus 103 ~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed--------a~r--~~--~~~l~~~~~~~~~~g~~~i~l~DT~G~~~-- 168 (363)
T TIGR02090 103 LKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED--------ATR--TD--IDFLIKVFKRAEEAGADRINIADTVGVLT-- 168 (363)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee--------cCC--CC--HHHHHHHHHHHHhCCCCEEEEeCCCCccC--
Confidence 222222333334445665421 122 24 67777888877777877777877888753
Q ss_pred HHHHHHHH
Q 015304 202 FAAYRGAI 209 (409)
Q Consensus 202 ~~~~~~~i 209 (409)
+..+.+.+
T Consensus 169 P~~v~~li 176 (363)
T TIGR02090 169 PQKMEELI 176 (363)
T ss_pred HHHHHHHH
Confidence 44443333
No 95
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=70.79 E-value=93 Score=29.14 Aligned_cols=117 Identities=13% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCCccEEE--EeHHHHHHHHHHHHHhCCCcceEEecCcCC--cHHHHHHHHHcCCcEEEc-C------------HHH--
Q 015304 28 EFDEVPFYI--LDLGVVVTLYNQMISKLPMIHPHYAVKCNP--EPALLEALAALGSNFDCA-S------------RSE-- 88 (409)
Q Consensus 28 ~~~t~P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKan~--~~~vl~~l~~~G~g~~va-S------------~~E-- 88 (409)
..+. |+-| ++.+.++.-++. +++..+.-++..-. .+.+++.+++.|+.+-+. . ..+
T Consensus 67 ~~~~-plsIDT~~~~v~eaaL~~----~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~ 141 (261)
T PRK07535 67 VVDV-PLCIDSPNPAAIEAGLKV----AKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAK 141 (261)
T ss_pred hCCC-CEEEeCCCHHHHHHHHHh----CCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHH
Confidence 3456 7644 444445444433 23556777887733 678899999999865542 1 122
Q ss_pred --HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcC
Q 015304 89 --IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYG 166 (409)
Q Consensus 89 --~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfG 166 (409)
+..+.++|+++++|++....-+. ..+.. -+..+++.++.+.+..|..++++=++ .-.||
T Consensus 142 ~~v~~a~~~GI~~~~IilDPgi~~~-------~~~~~-~~~~~l~~i~~l~~~~pg~p~l~G~S-----------n~Sfg 202 (261)
T PRK07535 142 ELVEKADEYGIPPEDIYIDPLVLPL-------SAAQD-AGPEVLETIRRIKELYPKVHTTCGLS-----------NISFG 202 (261)
T ss_pred HHHHHHHHcCCCHhHEEEeCCCCcc-------cCChH-HHHHHHHHHHHHHHhCCCCCEEEEeC-----------CCccC
Confidence 33467789999999987432210 00000 12345666777777666566665443 24688
Q ss_pred CC
Q 015304 167 VD 168 (409)
Q Consensus 167 i~ 168 (409)
++
T Consensus 203 lp 204 (261)
T PRK07535 203 LP 204 (261)
T ss_pred Cc
Confidence 86
No 96
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=70.63 E-value=41 Score=33.44 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCeEEEEEEe----e----CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCC-cCCCCC
Q 015304 174 IVPLLEAAEASGLSVVGVAFH----I----GS-AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFS-FTNSNT 243 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H----~----gs-~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~-~~~~~~ 243 (409)
+.++-+.+++.||++.++.+- . |+ ...+.+....+++.+++.++.++++|. + .+.+=+|.. ..+...
T Consensus 70 ~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~ai~~~kraId~A~eLGa-~--~v~v~~G~~g~~~~~~ 146 (382)
T TIGR02631 70 VRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGA-E--TYVVWGGREGAEYDGA 146 (382)
T ss_pred HHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-C--EEEEccCCCCCcCccc
Confidence 345556667789998776552 1 11 123555556778888889999999986 3 344434433 222222
Q ss_pred CCHHHHHHHHHHHHHh---hCCCCCCCCCCcEEEEcCC
Q 015304 244 KSFQEAASIIKEALHA---YFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 244 ~~~~~~~~~i~~~l~~---~~~~~~~~~~~~~l~~EpG 278 (409)
.++++..+...+.|.+ |..+.+ .++++.+||=
T Consensus 147 ~d~~~a~~~~~e~L~~lae~A~~~G---~GV~laLEp~ 181 (382)
T TIGR02631 147 KDVRAALDRMREALNLLAAYAEDQG---YGLRFALEPK 181 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhC---CCcEEEEccC
Confidence 2333333333333333 322211 2478999973
No 97
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=69.69 E-value=36 Score=31.34 Aligned_cols=97 Identities=15% Similarity=0.060 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHcCCeEEEEEEeeCCCC-------CCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC-CCC
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHIGSAA-------TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS-NTK 244 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~gs~~-------~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~-~~~ 244 (409)
++.++.+.+++.|+++.++++..+... .+++...+..+.++++++.++++|. +.|.+..|...... .+.
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~---~~i~~~~g~~~~~~~~~~ 116 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGC---PQVNCLAGKRPAGVSPEE 116 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCC---CEEEECcCCCCCCCCHHH
Confidence 355666667788999999876654211 0111112234556677888888876 35555555321100 011
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 245 SFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 245 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.++.+.+.+++.. ++..+ .++++.+||.
T Consensus 117 ~~~~~~~~l~~l~-~~A~~-----~gi~l~lE~~ 144 (254)
T TIGR03234 117 ARATLVENLRYAA-DALDR-----IGLTLLIEPI 144 (254)
T ss_pred HHHHHHHHHHHHH-HHHHh-----cCCEEEEEEC
Confidence 2334444454433 33333 2578999973
No 98
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=69.26 E-value=61 Score=29.94 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCC--CCCCCHH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGS-AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTN--SNTKSFQ 247 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs-~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~--~~~~~~~ 247 (409)
.++..++.+.++..++.+.++..+... -..+.......++.+++.++.++++|. ..-.+..|+..+... .....++
T Consensus 44 ~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~-~~vv~~~g~~~~~~~~~~~~~~~~ 122 (274)
T COG1082 44 YKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGA-KVVVVHPGLGAGADDPDSPEEARE 122 (274)
T ss_pred hhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCC-CeEEeecccCCcCCCCCCCcccHH
Confidence 334666777778889999988888763 233444445667777778888899886 433333343333221 1122334
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 248 EAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 248 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
...+.+++... +.... ++.+.+||
T Consensus 123 ~~~~~l~~l~~-~a~~~-----~i~l~~e~ 146 (274)
T COG1082 123 RWAEALEELAE-IAEEL-----GIGLALEN 146 (274)
T ss_pred HHHHHHHHHHH-HHHHh-----CCceEEee
Confidence 45454444332 21121 35577776
No 99
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=69.12 E-value=23 Score=34.78 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=36.8
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCC---cHHHHHHHHHcCC---cEEEcCH
Q 015304 33 PFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNP---EPALLEALAALGS---NFDCASR 86 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~ 86 (409)
|. +++.+.|.+-++.+++.++. .++ ++=+|| +.+.++.|++.|+ .+.+-|.
T Consensus 67 Ps-~L~~~~l~~ll~~i~~~~~~~~ei--tiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~ 124 (353)
T PRK05904 67 PN-CLNDQLLDILLSTIKPYVDNNCEF--TIECNPELITQSQINLLKKNKVNRISLGVQSM 124 (353)
T ss_pred cc-cCCHHHHHHHHHHHHHhcCCCCeE--EEEeccCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 44 47889999999999888863 343 555777 6789999999986 3444444
No 100
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=67.42 E-value=72 Score=29.66 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=38.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCC----CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEe
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGS----AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLD 231 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs----~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ld 231 (409)
.+++.++.+.+++.++++. +|... ...+.+.+...++.+++.++.++++|. +.-.++
T Consensus 44 ~~~~~~l~~~~~~~gl~ls---~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa-~~vv~h 104 (273)
T smart00518 44 EETAEKFKEALKENNIDVS---VHAPYLINLASPDKEKVEKSIERLIDEIKRCEELGI-KALVFH 104 (273)
T ss_pred HHHHHHHHHHHHHcCCCEE---EECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEEc
Confidence 5667777777778888754 34321 123556677788889999999999987 543334
No 101
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=67.39 E-value=1.1e+02 Score=28.61 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=72.1
Q ss_pred cceEEecCcC-Cc----------HHHHHHHHHcCC-cEEE--------cCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHH
Q 015304 56 IHPHYAVKCN-PE----------PALLEALAALGS-NFDC--------ASRSEIEAVLALGVSPDRIIYANPCKPVSHIK 115 (409)
Q Consensus 56 ~~i~yavKan-~~----------~~vl~~l~~~G~-g~~v--------aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~ 115 (409)
..+-..+|.- |. ..+++...+.|+ ++-| .|.+.+..+++. ++ -+|+.-.-..++.++.
T Consensus 50 ~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~-iPvl~kdfi~~~~qi~ 127 (260)
T PRK00278 50 PAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VS-LPVLRKDFIIDPYQIY 127 (260)
T ss_pred CeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-cC-CCEEeeeecCCHHHHH
Confidence 5566677762 22 577888888898 8888 888889988886 33 2466544455667899
Q ss_pred HHHHcCCcEEEec----CHHHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEE
Q 015304 116 YAANVGVNLTTFD----SVEELHKIRKWHP--KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVV 189 (409)
Q Consensus 116 ~a~~~gv~~~~vd----s~~el~~i~~~~~--~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~ 189 (409)
.+.+.|...+.++ +.++++.+.+.+. ...+++-++. .+|+ +++.+.+..+.
T Consensus 128 ~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~-------------------~~E~----~~A~~~gadiI 184 (260)
T PRK00278 128 EARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHD-------------------EEEL----ERALKLGAPLI 184 (260)
T ss_pred HHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCC-------------------HHHH----HHHHHcCCCEE
Confidence 9999998644333 3456666655443 3345555542 3444 23445688999
Q ss_pred EEE
Q 015304 190 GVA 192 (409)
Q Consensus 190 Glh 192 (409)
|++
T Consensus 185 gin 187 (260)
T PRK00278 185 GIN 187 (260)
T ss_pred EEC
Confidence 985
No 102
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=67.09 E-value=1.1e+02 Score=28.63 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=20.2
Q ss_pred cCCCCCcccHHHHHHHHHHc-C--CeEEEEEEeeC
Q 015304 165 YGVDHHPQEIVPLLEAAEAS-G--LSVVGVAFHIG 196 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~~-~--l~l~Glh~H~g 196 (409)
+|.- .|+++.++++.+++. + +. .|+|+|-.
T Consensus 161 ~G~~-~P~~v~~lv~~l~~~~~~~~~-i~~H~Hn~ 193 (266)
T cd07944 161 FGSM-YPEDIKRIISLLRSNLDKDIK-LGFHAHNN 193 (266)
T ss_pred CCCC-CHHHHHHHHHHHHHhcCCCce-EEEEeCCC
Confidence 4543 288899998888653 4 44 48888863
No 103
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=66.28 E-value=25 Score=33.17 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=43.7
Q ss_pred cCHHHHHHHHhHCCCCeE-EEEEecCCCCCCCCCCCC--CcCCCCCcc-cHHH----HHHHHHHcCCeEEEEEEeeCCCC
Q 015304 128 DSVEELHKIRKWHPKCDL-LIRIKPPDDSGAKHPLDS--KYGVDHHPQ-EIVP----LLEAAEASGLSVVGVAFHIGSAA 199 (409)
Q Consensus 128 ds~~el~~i~~~~~~~~v-~lRv~~~~~~~~~~~~~s--rfGi~~~~~-~~~~----~~~~~~~~~l~l~Glh~H~gs~~ 199 (409)
.|++.|.++.+...+.+| ..|++... ++..+ ..|.+ .. ++.+ +-+.+++.++++ .+|.|...
T Consensus 42 ~Nl~~l~~~L~~n~~~~I~~yRisS~l-----iP~ashp~~~~~--~~~~~~~~l~~iG~~~~~~~iRl---s~HP~qf~ 111 (275)
T PF03851_consen 42 QNLEDLLRILEYNIAHGIRFYRISSDL-----IPLASHPEVGWD--WEEEFAEELAEIGDLAKENGIRL---SMHPDQFT 111 (275)
T ss_dssp HHHHHHHHHHHHHHHTT--EEE--TTS-----STTTTSTT--S---HHHHHHHHHHHHHHHHHHTT-EE---EE---TT-
T ss_pred HHHHHHHHHHHHHHHcCCCEEecCccc-----CCCCCCcccccc--hHHHHHHHHHHHHHHHHHcCCeE---EecCCcce
Confidence 445555555444322233 56998632 12221 33433 22 2333 333445678876 59998643
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHcCCCCCc-----EEeecCCCCc
Q 015304 200 ----TKFAAYRGAIAAAKAVFETAARLGNNKMR-----VLDIGGGFSF 238 (409)
Q Consensus 200 ----~~~~~~~~~i~~~~~~~~~~~~~g~~~~~-----~ldiGGG~~~ 238 (409)
.+++....+++.+.--.+.++.+|. .-. .|++||.++-
T Consensus 112 vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~-~~~~~~~i~IH~GG~Ygd 158 (275)
T PF03851_consen 112 VLNSPREEVVENSIRDLEYHARLLDLMGL-DDSPDHKINIHVGGVYGD 158 (275)
T ss_dssp -TT-SSHHHHHHHHHHHHHHHHHHHHTT--TT----EEEEE----SS-
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CcccccEEEEeeCCCCCC
Confidence 3456666777777666667777786 433 7888888764
No 104
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.03 E-value=1.1e+02 Score=28.33 Aligned_cols=118 Identities=25% Similarity=0.356 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCC-cEEEcC----HHH---HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEe-cCH--------
Q 015304 68 PALLEALAALGS-NFDCAS----RSE---IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF-DSV-------- 130 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS----~~E---~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~v-ds~-------- 130 (409)
..+++.|.+.|+ .+||.. ..| ++.+.+.+ +..++.-... ...++++.|.+.|+..+.+ .+.
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~-~~~~~~~~~r-~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~ 100 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALG-LPARLIVWCR-AVKEDIEAALRCGVTAVHISIPVSDIHLAHK 100 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEecc-CCHHHHHHHHhCCcCEEEEEEecCHHHHHHH
Confidence 456666666776 566632 122 23333333 2233333332 2456777777777653322 222
Q ss_pred ---------HHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCC
Q 015304 131 ---------EELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAA 199 (409)
Q Consensus 131 ---------~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~ 199 (409)
+.+....+.+++....+++++.+ .+| .+ ++.+.++++.+.+.+.....|-=..|...
T Consensus 101 ~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~--------~~~--~~--~~~~~~~~~~~~~~G~~~i~l~DT~G~~~ 166 (259)
T cd07939 101 LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED--------ASR--AD--PDFLIEFAEVAQEAGADRLRFADTVGILD 166 (259)
T ss_pred hCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc--------CCC--CC--HHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 22223333344444556666522 123 34 77888888888777888888888899754
No 105
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=64.27 E-value=31 Score=34.92 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-c-ceEEecCcCC---cHHHHHHHHHcCC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPM-I-HPHYAVKCNP---EPALLEALAALGS 79 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~-~i~yavKan~---~~~vl~~l~~~G~ 79 (409)
|| |.+ ++.+.|.+-++.+++.++- . ..-..+=+|+ ..+.++.|++.|+
T Consensus 100 GT-Ps~-l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~ 152 (430)
T PRK08208 100 GT-PTL-LNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGV 152 (430)
T ss_pred Cc-ccc-CCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCC
Confidence 45 543 6788899999999887751 1 2345666776 5889999999985
No 106
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.97 E-value=1.1e+02 Score=27.60 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=68.9
Q ss_pred EeHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHHc-C-C--cEE-EcCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 37 LDLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAAL-G-S--NFD-CASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~~-G-~--g~~-vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
.+.+...+-.+.+.+. ++-+++.+ -+..-...++.+++. + + |++ |-+..|++.+.++|. +++ ..|+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA---~Fi-vsP~~~ 97 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGA---QFI-VSPGLT 97 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCC---CEE-ECCCCC
Confidence 4556666666666654 44466663 222344556666543 2 2 444 677899999999995 455 456678
Q ss_pred HHHHHHHHHcCCcEE-EecCHHHHHHHHhHCCCCeEEEEEec
Q 015304 111 VSHIKYAANVGVNLT-TFDSVEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 111 ~~~i~~a~~~gv~~~-~vds~~el~~i~~~~~~~~v~lRv~~ 151 (409)
++-++.+.++++..+ -+.+.+|+....+..-+ .+++.|
T Consensus 98 ~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~---~vKlFP 136 (212)
T PRK05718 98 PPLLKAAQEGPIPLIPGVSTPSELMLGMELGLR---TFKFFP 136 (212)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCC---EEEEcc
Confidence 889999999998754 67888998877665432 255654
No 107
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=63.67 E-value=1.5e+02 Score=28.79 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=50.9
Q ss_pred cEEEEeH-----HHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc--------CH------------
Q 015304 33 PFYILDL-----GVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA--------SR------------ 86 (409)
Q Consensus 33 P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va--------S~------------ 86 (409)
+++++|. +...+.++++++.+|++.+.. ....++.-++.+.+.|+ .+.|. +.
T Consensus 108 ~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~ 185 (325)
T cd00381 108 DVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATA 185 (325)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHH
Confidence 5555554 445666777777666443332 33355666777777777 33331 11
Q ss_pred -HHHHHHHh-CCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 87 -SEIEAVLA-LGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 87 -~E~~~a~~-~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
.|+..+.. .++ +|+-.|...+..++..|+..|...+.+.+
T Consensus 186 i~~v~~~~~~~~v---pVIA~GGI~~~~di~kAla~GA~~VmiGt 227 (325)
T cd00381 186 VADVAAAARDYGV---PVIADGGIRTSGDIVKALAAGADAVMLGS 227 (325)
T ss_pred HHHHHHHHhhcCC---cEEecCCCCCHHHHHHHHHcCCCEEEecc
Confidence 12222221 233 46667777777777777777776444443
No 108
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=63.47 E-value=1.3e+02 Score=28.54 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=17.7
Q ss_pred cccHHHHHHHHHHc--CCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEAS--GLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~--~l~l~Glh~H~gs 197 (409)
|.++.++++.+++. ++. .++|+|--.
T Consensus 175 P~~v~~l~~~l~~~~~~~~-i~~H~Hnd~ 202 (280)
T cd07945 175 PFETYTYISDMVKRYPNLH-FDFHAHNDY 202 (280)
T ss_pred HHHHHHHHHHHHhhCCCCe-EEEEeCCCC
Confidence 78888888887652 454 478888643
No 109
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=63.23 E-value=26 Score=35.75 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=35.6
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCC---cHHHHHHHHHcCC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNP---EPALLEALAALGS 79 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~---~~~vl~~l~~~G~ 79 (409)
|| |.+ ++.+.|.+-++.+++.++- ...-..+-+|+ +.+.++.|+++|+
T Consensus 111 Gt-Ps~-l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~ 162 (453)
T PRK09249 111 GT-PTF-LSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGF 162 (453)
T ss_pred cc-ccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCC
Confidence 45 543 5889999999999988751 12345666787 5789999999986
No 110
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=62.61 E-value=1.6e+02 Score=28.95 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHH-cCCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEA-SGLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~l~Glh~H~gs 197 (409)
|+++.++++.+++ .++. .|+|+|--.
T Consensus 170 P~~v~~lv~~l~~~~~v~-l~~H~HNd~ 196 (365)
T TIGR02660 170 PFSTYELVRALRQAVDLP-LEMHAHNDL 196 (365)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEecCCC
Confidence 7888888888865 3554 588888643
No 111
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=62.57 E-value=1.3e+02 Score=27.72 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred cHHHHHHHHHcCC-cEEEcCHH------------H-HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEE--EecC-
Q 015304 67 EPALLEALAALGS-NFDCASRS------------E-IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLT--TFDS- 129 (409)
Q Consensus 67 ~~~vl~~l~~~G~-g~~vaS~~------------E-~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~--~vds- 129 (409)
...+++.|.+.|+ .+|+.+.. | ++.+.+.+ +..++....... .++++.+.+.|+..+ .++.
T Consensus 21 ~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~-~~~~~~~l~~~~-~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 21 KLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLV-PNVKLQALVRNR-EKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred HHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhcc-CCcEEEEEccCc-hhhHHHHHhCCcCEEEEEEecC
Confidence 3578888888998 77776543 2 23333333 223453333322 678999999987532 2222
Q ss_pred ---------------HHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 130 ---------------VEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 130 ---------------~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
++.+....+.+++..+-+.++... .++...+ ++++.++++.+.+.+.....+.=.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~--------~~~~~~~--~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED--------AFGCKTD--PEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe--------ecCCCCC--HHHHHHHHHHHHHcCCCEEEechh
Confidence 222322233334444555555410 1221256 788888888888877766655444
Q ss_pred eCCCCCCHHHHHHH
Q 015304 195 IGSAATKFAAYRGA 208 (409)
Q Consensus 195 ~gs~~~~~~~~~~~ 208 (409)
.|. ..++.+.+.
T Consensus 169 ~G~--~~P~~v~~l 180 (265)
T cd03174 169 VGL--ATPEEVAEL 180 (265)
T ss_pred cCC--cCHHHHHHH
Confidence 443 345544433
No 112
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=62.34 E-value=50 Score=33.59 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=39.6
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC---cEEEcCHHH
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCASRSE 88 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~~E 88 (409)
|.+ ++.+.|.+-++.+++.++ ....-.++-+|+ ..+.++.+++.|+ .+.|-|..+
T Consensus 125 Ps~-L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d 186 (449)
T PRK09058 125 PTA-LSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNT 186 (449)
T ss_pred ccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCH
Confidence 443 678899999999999886 222345677777 6789999999996 455666544
No 113
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=62.10 E-value=32 Score=35.00 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=32.3
Q ss_pred EeHHHHHHHHHHHHHhCCC-cceEEecCcCC---cHHHHHHHHHcCC
Q 015304 37 LDLGVVVTLYNQMISKLPM-IHPHYAVKCNP---EPALLEALAALGS 79 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~-~~i~yavKan~---~~~vl~~l~~~G~ 79 (409)
++.+.+.+-++.+++.++- ......+=+|+ +.+.++.|+++|+
T Consensus 116 l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~ 162 (455)
T TIGR00538 116 LSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGF 162 (455)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCC
Confidence 3789999999999988761 22334555676 6899999999986
No 114
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.07 E-value=76 Score=28.75 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=60.1
Q ss_pred EeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcC---HHHHHHHHhCCCCCCcEEEeCCCCCHHH
Q 015304 37 LDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCAS---RSEIEAVLALGVSPDRIIYANPCKPVSH 113 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS---~~E~~~a~~~G~~~~~Ii~~gp~k~~~~ 113 (409)
++.+.=.+.++.+++.+|+..+-.-.+.+. .-++...++|+.|-|+- .+=++.+++.|+ .+...+.|+.|
T Consensus 48 l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i-----~~iPG~~TptE 120 (212)
T PRK05718 48 LRTPAALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPI-----PLIPGVSTPSE 120 (212)
T ss_pred cCCccHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHcCCCEEECCCCCHHHHHHHHHcCC-----CEeCCCCCHHH
Confidence 344445677888998899888888888886 56788999999888653 433445555554 44444478899
Q ss_pred HHHHHHcCCcEE
Q 015304 114 IKYAANVGVNLT 125 (409)
Q Consensus 114 i~~a~~~gv~~~ 125 (409)
+..|.+.|..++
T Consensus 121 i~~a~~~Ga~~v 132 (212)
T PRK05718 121 LMLGMELGLRTF 132 (212)
T ss_pred HHHHHHCCCCEE
Confidence 999999998754
No 115
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=61.98 E-value=83 Score=29.40 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=54.4
Q ss_pred cccHHHHHHHHHHc-CCeEEEEEEe--eCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHH
Q 015304 171 PQEIVPLLEAAEAS-GLSVVGVAFH--IGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQ 247 (409)
Q Consensus 171 ~~~~~~~~~~~~~~-~l~l~Glh~H--~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~ 247 (409)
.+++.++.+.+++. ++.+. +|.. .+....+++...+.++.++++++.++++|. + ++.+-.|.......+..++
T Consensus 44 ~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~-~--~v~~~~g~~~~~~~~~~~~ 119 (279)
T cd00019 44 KERAEKFKAIAEEGPSICLS-VHAPYLINLASPDKEKREKSIERLKDEIERCEELGI-R--LLVFHPGSYLGQSKEEGLK 119 (279)
T ss_pred HHHHHHHHHHHHHcCCCcEE-EEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCC-C--EEEECCCCCCCCCHHHHHH
Confidence 56677777777666 55443 2221 112223455677788899999999999987 4 3444333221111122344
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 248 EAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 248 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.+.+.+++... +... .++++.+|+-
T Consensus 120 ~~~~~l~~l~~-~a~~-----~gi~l~lEn~ 144 (279)
T cd00019 120 RVIEALNELID-KAET-----KGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHH-hccC-----CCCEEEEeCC
Confidence 45555554443 3222 3688999974
No 116
>PRK05660 HemN family oxidoreductase; Provisional
Probab=61.90 E-value=43 Score=33.20 Aligned_cols=48 Identities=17% Similarity=0.327 Sum_probs=34.7
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCC---cHHHHHHHHHcCC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNP---EPALLEALAALGS 79 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~---~~~vl~~l~~~G~ 79 (409)
|| |.+ ++.+.|.+-++.+++.++- ...-.++=+|| ..+.++.|+++|+
T Consensus 67 Gt-Ps~-l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv 118 (378)
T PRK05660 67 GT-PSL-FSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGV 118 (378)
T ss_pred Cc-ccc-CCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCC
Confidence 45 553 5678888888888888862 12345677787 5788999999985
No 117
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=61.80 E-value=1.4e+02 Score=29.37 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCC-cEEE----cCHHHHHH---HHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEE-EecCHHH------
Q 015304 68 PALLEALAALGS-NFDC----ASRSEIEA---VLALGVSPDRIIYANPCKPVSHIKYAANVGVNLT-TFDSVEE------ 132 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~v----aS~~E~~~---a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~-~vds~~e------ 132 (409)
..+++.|.+.|+ .+|+ +|..|.+. +.+.+-+ .++.-... ...++++.|++.|+..+ .+.+.++
T Consensus 26 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~-~~i~~~~r-~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~ 103 (365)
T TIGR02660 26 LAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLP-ARLMAWCR-ARDADIEAAARCGVDAVHISIPVSDLQIEAK 103 (365)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCC-cEEEEEcC-CCHHHHHHHHcCCcCEEEEEEccCHHHHHHH
Confidence 567777777777 6666 44444332 2233322 33433332 24677888877776532 2223222
Q ss_pred --------HH---HHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCC
Q 015304 133 --------LH---KIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATK 201 (409)
Q Consensus 133 --------l~---~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~ 201 (409)
++ ...+.+++....+++++.+ .+| .+ ++.+.++++.+.+.+.....|.=..|...
T Consensus 104 ~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed--------~~r--~~--~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~-- 169 (365)
T TIGR02660 104 LRKDRAWVLERLARLVSFARDRGLFVSVGGED--------ASR--AD--PDFLVELAEVAAEAGADRFRFADTVGILD-- 169 (365)
T ss_pred hCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC--------CCC--CC--HHHHHHHHHHHHHcCcCEEEEcccCCCCC--
Confidence 22 2222333344455666522 122 23 67777788877777888888888899753
Q ss_pred HHHHHHHHHHH
Q 015304 202 FAAYRGAIAAA 212 (409)
Q Consensus 202 ~~~~~~~i~~~ 212 (409)
+..+.+.++.+
T Consensus 170 P~~v~~lv~~l 180 (365)
T TIGR02660 170 PFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHHH
Confidence 45444444433
No 118
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=61.26 E-value=1e+02 Score=30.01 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=72.0
Q ss_pred EEEeHHHHHHHHHHHHHh-CCCcceE-----------EecCcCCcHHHHHHHHHc--CCcEEE------cCHHHHHHHHh
Q 015304 35 YILDLGVVVTLYNQMISK-LPMIHPH-----------YAVKCNPEPALLEALAAL--GSNFDC------ASRSEIEAVLA 94 (409)
Q Consensus 35 ~v~d~~~l~~n~~~~~~~-~~~~~i~-----------yavKan~~~~vl~~l~~~--G~g~~v------aS~~E~~~a~~ 94 (409)
+-++.+...+-++.+.++ ++-+++. |..++.+..+.++.+.+. +..+.+ .+..+++.+.+
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~ 99 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYD 99 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHH
Confidence 345566666666665443 1223332 234444455666655432 233222 36777888888
Q ss_pred CCCCCCcEEEeCCC--CCHHHHHHHHHcCCcEE-E-----ecCHHHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCC
Q 015304 95 LGVSPDRIIYANPC--KPVSHIKYAANVGVNLT-T-----FDSVEELHKIRKWHP--KCDLLIRIKPPDDSGAKHPLDSK 164 (409)
Q Consensus 95 ~G~~~~~Ii~~gp~--k~~~~i~~a~~~gv~~~-~-----vds~~el~~i~~~~~--~~~v~lRv~~~~~~~~~~~~~sr 164 (409)
.|++.=+|.+.-.- ...+.+++|.+.|.... + .-+.+++..+.+... .+. .+.+. + -
T Consensus 100 ~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~-~i~i~--D----------T 166 (337)
T PRK08195 100 AGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQ-CVYVV--D----------S 166 (337)
T ss_pred cCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCC-EEEeC--C----------C
Confidence 88753233321110 11234455556676421 1 134555554443321 122 12221 1 2
Q ss_pred cCCCCCcccHHHHHHHHHH-c--CCeEEEEEEeeCC
Q 015304 165 YGVDHHPQEIVPLLEAAEA-S--GLSVVGVAFHIGS 197 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~-~--~l~l~Glh~H~gs 197 (409)
+|.- .|+++.++++.+++ . .+ -.|+|+|-.-
T Consensus 167 ~G~~-~P~~v~~~v~~l~~~l~~~i-~ig~H~Hnnl 200 (337)
T PRK08195 167 AGAL-LPEDVRDRVRALRAALKPDT-QVGFHGHNNL 200 (337)
T ss_pred CCCC-CHHHHHHHHHHHHHhcCCCC-eEEEEeCCCc
Confidence 3432 18899999998865 3 34 4589999643
No 119
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=61.26 E-value=37 Score=33.53 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=35.4
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCC---cHHHHHHHHHcCC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNP---EPALLEALAALGS 79 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~---~~~vl~~l~~~G~ 79 (409)
|| |. +++.+.|.+-++.+++.++- -..-+++-+|+ +.+.++.|+++|+
T Consensus 60 Gt-pt-~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~ 111 (377)
T PRK08599 60 GT-PT-ALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGV 111 (377)
T ss_pred CC-cc-cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCC
Confidence 45 55 46788999999999988751 11244566777 6899999999986
No 120
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=61.25 E-value=1.4e+02 Score=27.87 Aligned_cols=119 Identities=18% Similarity=0.319 Sum_probs=70.3
Q ss_pred cHHHHHHHHHcCC-cEEEc----CHHHHH---HHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEe-----------
Q 015304 67 EPALLEALAALGS-NFDCA----SRSEIE---AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF----------- 127 (409)
Q Consensus 67 ~~~vl~~l~~~G~-g~~va----S~~E~~---~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~v----------- 127 (409)
-..+++.|.+.|+ .+||. +..+.. .+.+.+.+ .++. .-.....++++.|++.|+..+.+
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~-~~v~-~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~ 101 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLK-AKIL-THIRCHMDDARIAVETGVDGVDLVFGTSPFLREA 101 (262)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCC-CcEE-EEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHH
Confidence 3567777888887 67774 333332 22233433 3342 22223567888888888764433
Q ss_pred -------cCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCC
Q 015304 128 -------DSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAA 199 (409)
Q Consensus 128 -------ds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~ 199 (409)
++++.+..+.+.++...+-+++++. .-|+.+ ++.+.++++.+.+.+..-..+-=..|...
T Consensus 102 ~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e----------da~r~~--~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~ 168 (262)
T cd07948 102 SHGKSITEIIESAVEVIEFVKSKGIEVRFSSE----------DSFRSD--LVDLLRVYRAVDKLGVNRVGIADTVGIAT 168 (262)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----------eeCCCC--HHHHHHHHHHHHHcCCCEEEECCcCCCCC
Confidence 2233333333344444455666652 345667 78888888888887877777888899754
No 121
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=60.76 E-value=1.7e+02 Score=28.51 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=19.4
Q ss_pred cccHHHHHHHHHH-cC--CeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEA-SG--LSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~--l~l~Glh~H~gs 197 (409)
|+++.++++.+++ .+ + -.|+|+|-.-
T Consensus 171 P~~v~~~v~~l~~~l~~~i-~ig~H~Hnnl 199 (333)
T TIGR03217 171 PDDVRDRVRALKAVLKPET-QVGFHAHHNL 199 (333)
T ss_pred HHHHHHHHHHHHHhCCCCc-eEEEEeCCCC
Confidence 8899999988865 33 4 4599999743
No 122
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=60.09 E-value=1.5e+02 Score=28.81 Aligned_cols=92 Identities=11% Similarity=0.166 Sum_probs=62.0
Q ss_pred cEEEE-----eHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc--------C------------H
Q 015304 33 PFYIL-----DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA--------S------------R 86 (409)
Q Consensus 33 P~~v~-----d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va--------S------------~ 86 (409)
-...+ +...+.+-++.+++.+|+.-+. +|--.+.+-++.|.++|+ .+.|. + +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi--~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVI--AGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEE--EEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 56667 6778888899999988865332 233346777888888888 55433 2 1
Q ss_pred HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 87 SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 87 ~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
.-+..+.++ +. -.|+..|..++..++..|+..|...+.+.
T Consensus 191 ~ai~~~~~~-~~-ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 191 AALRWCAKA-AR-KPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHH-cC-CCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 112333332 12 46888999999999999999998755555
No 123
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=59.68 E-value=1e+02 Score=25.73 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCc
Q 015304 174 IVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSF 238 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~ 238 (409)
.+++++.+.+.+.+++|+++..++... .+.++++.+++.+.+.+ .+=+||...+
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~~~~----------~~~~~~~~L~~~~~~~~-~i~vGG~~~~ 96 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHGEI----------DCRGLREKCIEAGLGDI-LLYVGGNLVV 96 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCHH----------HHHHHHHHHHhcCCCCC-eEEEECCCCC
Confidence 345566677778999999877765321 12334555666655343 4567887654
No 124
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=59.46 E-value=38 Score=33.26 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC---cEEEcCH
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCASR 86 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~ 86 (409)
|| |.+ ++.+.|.+-++.+++.++ ....-+++=+|| +...++.|++.|+ .+.+-|.
T Consensus 60 Gt-Ps~-l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~ 121 (360)
T TIGR00539 60 GT-PNT-LSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSF 121 (360)
T ss_pred Cc-hhc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccC
Confidence 56 653 667788888888877764 222345667787 6789999999986 3445444
No 125
>PRK09875 putative hydrolase; Provisional
Probab=59.27 E-value=1.7e+02 Score=27.98 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=35.0
Q ss_pred CHHHHHHHHhCCCCCCcEEEeCCC--CCHHHHHHHHHcCCcEEEecC
Q 015304 85 SRSEIEAVLALGVSPDRIIYANPC--KPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 85 S~~E~~~a~~~G~~~~~Ii~~gp~--k~~~~i~~a~~~gv~~~~vds 129 (409)
....++.+.+.|++++++++.+.. .+.+.++.+++.|+. +-+|+
T Consensus 165 g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~-l~fD~ 210 (292)
T PRK09875 165 GLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAY-VQFDT 210 (292)
T ss_pred hHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCE-EEecc
Confidence 334578888999999999999763 567888999999995 66664
No 126
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=59.27 E-value=95 Score=30.72 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEcC------------HHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 44 TLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCAS------------RSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 44 ~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS------------~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
++++.+++..+ +-..+|--.+++.++.+.+.|+ +++|+. ...+..++++--+.-.|+.+|...+
T Consensus 218 ~~i~~l~~~~~---~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~ 294 (367)
T TIGR02708 218 RDIEEIAGYSG---LPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRR 294 (367)
T ss_pred HHHHHHHHhcC---CCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCC
Confidence 45666666543 2234788778889999999998 777765 3334333332111136888888888
Q ss_pred HHHHHHHHHcCCcEEE
Q 015304 111 VSHIKYAANVGVNLTT 126 (409)
Q Consensus 111 ~~~i~~a~~~gv~~~~ 126 (409)
..++..|+..|...+.
T Consensus 295 g~Dv~KaLalGAd~V~ 310 (367)
T TIGR02708 295 GQHVFKALASGADLVA 310 (367)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 8888888888886443
No 127
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=59.25 E-value=1.9e+02 Score=28.65 Aligned_cols=129 Identities=19% Similarity=0.282 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCC-cEEE----cCHHHH---HHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEE-EecCHHHH-----
Q 015304 68 PALLEALAALGS-NFDC----ASRSEI---EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLT-TFDSVEEL----- 133 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~v----aS~~E~---~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~-~vds~~el----- 133 (409)
..+++.|.+.|+ .+|+ ++..|. +.+.+.|.+ .+++..+.. ..++++.|++.|+..+ .+.+.+++
T Consensus 29 ~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~-~~i~~~~r~-~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~ 106 (378)
T PRK11858 29 LAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLN-ASILALNRA-VKSDIDASIDCGVDAVHIFIATSDIHIKHK 106 (378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCC-eEEEEEccc-CHHHHHHHHhCCcCEEEEEEcCCHHHHHHH
Confidence 567777777777 6666 333442 233334544 234433432 3567888888777533 23332222
Q ss_pred ---------H---HHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCC
Q 015304 134 ---------H---KIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATK 201 (409)
Q Consensus 134 ---------~---~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~ 201 (409)
+ ...+.++.....+++++.+ .+| .+ ++.+.++++.+.+.+.....|.=..|. ..
T Consensus 107 ~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed--------~~r--~~--~~~l~~~~~~~~~~Ga~~I~l~DT~G~--~~ 172 (378)
T PRK11858 107 LKKTREEVLERMVEAVEYAKDHGLYVSFSAED--------ASR--TD--LDFLIEFAKAAEEAGADRVRFCDTVGI--LD 172 (378)
T ss_pred hCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc--------CCC--CC--HHHHHHHHHHHHhCCCCEEEEeccCCC--CC
Confidence 2 2222333334455665422 123 24 677888888887777776655444443 34
Q ss_pred HHHHHHHHHHH
Q 015304 202 FAAYRGAIAAA 212 (409)
Q Consensus 202 ~~~~~~~i~~~ 212 (409)
+..+.+.++.+
T Consensus 173 P~~v~~lv~~l 183 (378)
T PRK11858 173 PFTMYELVKEL 183 (378)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 128
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=59.18 E-value=81 Score=31.50 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEE
Q 015304 71 LEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIR 148 (409)
Q Consensus 71 l~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lR 148 (409)
+++..+.|+ =.|.++-+.+...|+.=+....+-+... .--+....+.+.+-....++..+-++.+.++++.-==.+=
T Consensus 83 ~~~A~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfmT 161 (431)
T PRK13352 83 AKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTV-PIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFMT 161 (431)
T ss_pred HHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcCh-hHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEEE
Q ss_pred EecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHH-------HHHHHHHHHHHHHH
Q 015304 149 IKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRG-------AIAAAKAVFETAAR 221 (409)
Q Consensus 149 v~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~-------~i~~~~~~~~~~~~ 221 (409)
|+. |+. .+.++.++..+ ++.|+-+--||-. ..|.. -.+.|..+++++++
T Consensus 162 iHc--------------Gi~------~~~~~~~~~~~-R~~giVSRGGs~~---~~WM~~n~~ENPlye~fD~lLeI~~~ 217 (431)
T PRK13352 162 IHC--------------GVT------RETLERLKKSG-RIMGIVSRGGSFL---AAWMLHNNKENPLYEHFDYLLEILKE 217 (431)
T ss_pred Ecc--------------chh------HHHHHHHHhcC-CccCeecCCHHHH---HHHHHHcCCcCchHHHHHHHHHHHHH
Q ss_pred cCCCCCcEEeecCCC-CcCCCCCCCHHHHHHHH-HHHHHhhCCCCCCCCCCcEEEEc-CC
Q 015304 222 LGNNKMRVLDIGGGF-SFTNSNTKSFQEAASII-KEALHAYFPNELLPGSSLRVISE-PG 278 (409)
Q Consensus 222 ~g~~~~~~ldiGGG~-~~~~~~~~~~~~~~~~i-~~~l~~~~~~~~~~~~~~~l~~E-pG 278 (409)
+.+ .|++|-|+ |....+..|-.++.+.+ .-.|.+...+. ++++++| ||
T Consensus 218 yDV----tlSLGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~-----gVQvMVEGPG 268 (431)
T PRK13352 218 YDV----TLSLGDGLRPGCIADATDRAQIQELITLGELVKRAREA-----GVQVMVEGPG 268 (431)
T ss_pred hCe----eeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHc-----CCeEEEECCC
No 129
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=59.04 E-value=98 Score=29.53 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=8.8
Q ss_pred EcCHHHHHHHHhCCC
Q 015304 83 CASRSEIEAVLALGV 97 (409)
Q Consensus 83 vaS~~E~~~a~~~G~ 97 (409)
|.|.++++.+.++|+
T Consensus 180 v~s~~~a~~a~~~G~ 194 (299)
T cd02809 180 ILTPEDALRAVDAGA 194 (299)
T ss_pred cCCHHHHHHHHHCCC
Confidence 455666666666665
No 130
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=59.04 E-value=45 Score=33.96 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=32.4
Q ss_pred EeHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC
Q 015304 37 LDLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS 79 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~ 79 (409)
++.+.|.+-++.+++.++ ....-+++=+|+ +.+.++.|++.|+
T Consensus 117 l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~ 163 (453)
T PRK13347 117 LNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGF 163 (453)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCC
Confidence 567889999999988875 122344566776 6899999999986
No 131
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.92 E-value=31 Score=29.13 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=44.1
Q ss_pred CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHH---------HHHHHhCCCCCCcEE-EeCCCCCHHHHHHHHHcCCc
Q 015304 55 MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSE---------IEAVLALGVSPDRII-YANPCKPVSHIKYAANVGVN 123 (409)
Q Consensus 55 ~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E---------~~~a~~~G~~~~~Ii-~~gp~k~~~~i~~a~~~gv~ 123 (409)
++++-|.==--+-.++++.+.+..+ -+.++|... .+.+++.|.+ +|+ +.|+.+++++++...++|+.
T Consensus 40 GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~--~i~v~~GGvip~~d~~~l~~~G~~ 117 (143)
T COG2185 40 GFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVE--DILVVVGGVIPPGDYQELKEMGVD 117 (143)
T ss_pred CceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCc--ceEEeecCccCchhHHHHHHhCcc
Confidence 4555443221222567777777776 566676643 4567778874 455 88888999998888888885
No 132
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=57.91 E-value=1.4e+02 Score=26.51 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCcceEEecCcC-CcHHHHHHHHHcCCcEE----EcC---HHH-HHHHHhCCCCCCcEE-EeCCCCCHH
Q 015304 43 VTLYNQMISKLPMIHPHYAVKCN-PEPALLEALAALGSNFD----CAS---RSE-IEAVLALGVSPDRII-YANPCKPVS 112 (409)
Q Consensus 43 ~~n~~~~~~~~~~~~i~yavKan-~~~~vl~~l~~~G~g~~----vaS---~~E-~~~a~~~G~~~~~Ii-~~gp~k~~~ 112 (409)
.+.++.+++.+|+..+..-+|.. +-...++.+.+.|+.+- .++ +.| ++.+++.|.+. ++ +.+|..+.+
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~--~~~~~~~~t~~~ 117 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEV--QVDLINVKDKVK 117 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEE--EEEecCCCChHH
Confidence 45567777777665566666644 22234677777776433 122 123 34556666531 22 235544457
Q ss_pred HHHHHHHcCCcEEEec
Q 015304 113 HIKYAANVGVNLTTFD 128 (409)
Q Consensus 113 ~i~~a~~~gv~~~~vd 128 (409)
+++.+.+.|+..+.+.
T Consensus 118 ~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 118 RAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 7777777777655554
No 133
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=57.68 E-value=1.7e+02 Score=30.07 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHH-----HHHHHHHHHHHhCCCcceEEecCcC-CcHHHHHHHHHcCC-cEE---
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLG-----VVVTLYNQMISKLPMIHPHYAVKCN-PEPALLEALAALGS-NFD--- 82 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~-----~l~~n~~~~~~~~~~~~i~yavKan-~~~~vl~~l~~~G~-g~~--- 82 (409)
....+.++..+. .+- ...++|.. .+.+.++++++.+|++.+.. -| ...+-++.|.++|+ .+.
T Consensus 224 ~~~~~ra~~Lv~----aGV-d~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLD----AGV-DVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHH----hCC-CEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEECC
Confidence 455666666664 233 45555544 46777888998888765544 43 46788888999998 676
Q ss_pred -----EcC-------------HHHHH-HHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 83 -----CAS-------------RSEIE-AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 83 -----vaS-------------~~E~~-~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
|.+ ..|+. .+++.|+ .|+-.|..+++.++..|+..|...+.+.++
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~---~viadGgi~~~~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGG---HVWADGGVRHPRDVALALAAGASNVMVGSW 359 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCC---cEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence 332 22332 2234454 589999999999999999999876677654
No 134
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=57.66 E-value=62 Score=32.08 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=41.1
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCCCc-ceEEecCcCC---cHHHHHHHHHcCC---cEEEcCHH
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLPMI-HPHYAVKCNP---EPALLEALAALGS---NFDCASRS 87 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~~~-~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~~ 87 (409)
-|| |. +++.+.|.+-++.+++.|+-. ..-.++=+|| ...-++.|++.|+ .+.|-|..
T Consensus 63 GGT-Ps-~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~ 126 (380)
T PRK09057 63 GGT-PS-LMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALN 126 (380)
T ss_pred CCc-cc-cCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCC
Confidence 367 76 688999999999999988622 1234566777 5688999999986 45555554
No 135
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=57.45 E-value=66 Score=29.74 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCCC-------CCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeec-CCCCcCCCCCCC
Q 015304 174 IVPLLEAAEASGLSVVGVAFHIGSAA-------TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIG-GGFSFTNSNTKS 245 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H~gs~~-------~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiG-GG~~~~~~~~~~ 245 (409)
..++.+.+++.||++...|...+... .++.......+.++++++.++++|. + +|.+. |..+..+..+..
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga-~--~i~~~~g~~~~~~~~~~~ 118 (258)
T PRK09997 42 IEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGN-K--KINCLVGKTPAGFSSEQI 118 (258)
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCC-C--EEEECCCCCCCCCCHHHH
Confidence 45556667788999876543332211 0111112234556778888888886 3 34433 222222111122
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 246 FQEAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 246 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
++.+.+.+++.. ++..+ .++++.+||
T Consensus 119 ~~~~~~~l~~l~-~~a~~-----~Gv~l~lE~ 144 (258)
T PRK09997 119 HATLVENLRYAA-NMLMK-----EDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHH-HHHHH-----cCCEEEEEe
Confidence 344444444332 22222 257899997
No 136
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=57.25 E-value=1.8e+02 Score=27.59 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAA 199 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~ 199 (409)
++.+.++++.+.+.|.....+-=..|...
T Consensus 146 ~~~~~~~~~~~~~~G~~~i~l~DT~G~~~ 174 (280)
T cd07945 146 PDYVFQLVDFLSDLPIKRIMLPDTLGILS 174 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCC
Confidence 77788888888778888888888899864
No 137
>PRK15447 putative protease; Provisional
Probab=57.13 E-value=1.8e+02 Score=27.76 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=66.2
Q ss_pred EeHHHHHHHHHHHHHhCCCcceEEec----CcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEe--CCCC
Q 015304 37 LDLGVVVTLYNQMISKLPMIHPHYAV----KCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYA--NPCK 109 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~~~i~yav----Kan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~--gp~k 109 (409)
++.+.+.+-++.++++ +.+++.++ +.+....-++.+.+.|. ++.|.+++++..+++.|++ ++.. =+..
T Consensus 45 f~~~~l~e~v~~~~~~--gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g~l~~~~e~~~~---l~~d~~lni~ 119 (301)
T PRK15447 45 LKVGDWLELAERLAAA--GKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLGAVRLLAERGLP---FVAGPALNCY 119 (301)
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHHHHHHHHhcCCC---EEEecccccC
Confidence 6778888888888763 45665543 32332223333445554 8999999999999987653 4433 3346
Q ss_pred CHHHHHHHHHcCCcEEEec---CHHHHHHHHhHC
Q 015304 110 PVSHIKYAANVGVNLTTFD---SVEELHKIRKWH 140 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~~vd---s~~el~~i~~~~ 140 (409)
+...++...+.|+..+++. |++|+..|.+..
T Consensus 120 N~~a~~~l~~~G~~rv~ls~ELsl~eI~~i~~~~ 153 (301)
T PRK15447 120 NAATLALLARLGATRWCMPVELSRDWLANLLAQC 153 (301)
T ss_pred CHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHhc
Confidence 7778888889999766665 567777776553
No 138
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=56.55 E-value=1.5e+02 Score=26.69 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=50.6
Q ss_pred cHHHHHHHHHhhcCCCCCccEE----EEeHHHHHHHHHHHHHhCCCcceEEecCcCC---cHHHHHHHHHcCCcEE---E
Q 015304 14 ELTEFVRSTILKRQEFDEVPFY----ILDLGVVVTLYNQMISKLPMIHPHYAVKCNP---EPALLEALAALGSNFD---C 83 (409)
Q Consensus 14 ~~~~~~~~~~~~~~~~~t~P~~----v~d~~~l~~n~~~~~~~~~~~~i~yavKan~---~~~vl~~l~~~G~g~~---v 83 (409)
++.+++++....- +. |.. -.|.+.+.+..+.+.+..+++ .+|--. -...++.|.+.|+... |
T Consensus 38 ~~~~~~~~i~~~~---~~-~v~~qv~~~~~e~~i~~a~~l~~~~~~~----~iKIP~T~~gl~ai~~L~~~gi~v~~T~V 109 (211)
T cd00956 38 DFEAVLKEICEII---DG-PVSAQVVSTDAEGMVAEARKLASLGGNV----VVKIPVTEDGLKAIKKLSEEGIKTNVTAI 109 (211)
T ss_pred CHHHHHHHHHHhc---CC-CEEEEEEeCCHHHHHHHHHHHHHhCCCE----EEEEcCcHhHHHHHHHHHHcCCceeeEEe
Confidence 5556665555432 33 432 356778888888888776642 233322 3677888888897444 8
Q ss_pred cCHHHHHHHHhCCC
Q 015304 84 ASRSEIEAVLALGV 97 (409)
Q Consensus 84 aS~~E~~~a~~~G~ 97 (409)
-|...+..+.++|.
T Consensus 110 ~s~~Qa~~Aa~AGA 123 (211)
T cd00956 110 FSAAQALLAAKAGA 123 (211)
T ss_pred cCHHHHHHHHHcCC
Confidence 89999999999984
No 139
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=55.99 E-value=2e+02 Score=28.97 Aligned_cols=76 Identities=22% Similarity=0.143 Sum_probs=59.2
Q ss_pred ecCcCCc--HHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHc--CCcEEEecCHHHHHHH
Q 015304 61 AVKCNPE--PALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANV--GVNLTTFDSVEELHKI 136 (409)
Q Consensus 61 avKan~~--~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~--gv~~~~vds~~el~~i 136 (409)
-.|++.. ..+-+.|.+.|.-+-=..++|+..-+. +-+|..|+.-.-.|++++|..+++. |.. .. |+.+|+.+.
T Consensus 108 KsKSmvseEIgln~~Le~~G~ev~ETDLGE~IlQl~-~~~PsHIV~PAlH~~reqIa~if~ekl~~~-~~-~~~eel~~~ 184 (459)
T COG1139 108 KSKSMVSEEIGLNHYLEEKGIEVWETDLGELILQLA-GEPPSHIVAPALHKNREQIAEIFKEKLGYE-GE-DTPEELTAA 184 (459)
T ss_pred EecchhHHHhhhHHHHHHcCCeEEEccHHHHHHHhc-CCCCcceeccccccCHHHHHHHHHHhcCCC-CC-CCHHHHHHH
Confidence 3477764 566788889999888889999987666 6688999988888999999999854 433 24 999999877
Q ss_pred HhH
Q 015304 137 RKW 139 (409)
Q Consensus 137 ~~~ 139 (409)
.+.
T Consensus 185 aR~ 187 (459)
T COG1139 185 ARE 187 (459)
T ss_pred HHH
Confidence 653
No 140
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=55.66 E-value=55 Score=29.58 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE------------EeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 68 PALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII------------YANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii------------~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
..+++.+.+.|+ ++.+.+.++++.+++.- + -.|+ +.++ ..++++.|.+.|+..+.+|.
T Consensus 26 ~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~-~-~Pil~~~~~d~~~~~~~~~~--~~~~v~~a~~aGad~I~~d~ 96 (221)
T PRK01130 26 AAMALAAVQGGAVGIRANGVEDIKAIRAVV-D-VPIIGIIKRDYPDSEVYITP--TLKEVDALAAAGADIIALDA 96 (221)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhC-C-CCEEEEEecCCCCCCceECC--CHHHHHHHHHcCCCEEEEeC
Confidence 567777788888 89999999998887741 1 1232 2333 45789999999998666653
No 141
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=55.36 E-value=68 Score=32.31 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=44.3
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCC---cHHHHHHHHHcCC---cEEEcCHHH
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNP---EPALLEALAALGS---NFDCASRSE 88 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~~E 88 (409)
-|| |. .++...|++-+..+++.|+ ....-.++=+|| ...-++.+++.|+ .+.|-|..+
T Consensus 95 GGT-Ps-lL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~ 160 (416)
T COG0635 95 GGT-PS-LLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFND 160 (416)
T ss_pred CCc-cc-cCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCH
Confidence 456 65 4788899999999999984 333566788899 5788899999997 677777644
No 142
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=55.32 E-value=1.3e+02 Score=27.51 Aligned_cols=90 Identities=11% Similarity=0.142 Sum_probs=57.6
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCc-----CCcHHHHHHHHHcCC-cEEEcCHH-----HHHHHHhCCCCCCc
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKC-----NPEPALLEALAALGS-NFDCASRS-----EIEAVLALGVSPDR 101 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa-----n~~~~vl~~l~~~G~-g~~vaS~~-----E~~~a~~~G~~~~~ 101 (409)
..+.-|.+.+.+-++.+++. +..+ .+|. .....+++.+.+.|+ .+.+.+.. ....+.+.- ..-.
T Consensus 119 ~~Ll~~p~~l~eiv~avr~~--~~pV--svKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ip 193 (233)
T cd02911 119 EALLKDPERLSEFIKALKET--GVPV--SVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELF 193 (233)
T ss_pred hHHcCCHHHHHHHHHHHHhc--CCCE--EEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCE
Confidence 34566788888888888873 2222 2333 245788899999987 56554422 233333332 1235
Q ss_pred EEEeCCCCCHHHHHHHHHcCCcEEEe
Q 015304 102 IIYANPCKPVSHIKYAANVGVNLTTF 127 (409)
Q Consensus 102 Ii~~gp~k~~~~i~~a~~~gv~~~~v 127 (409)
|+-+|...+.++.+.+++.|+..+.+
T Consensus 194 VIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 194 IIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 78888888888888888888764444
No 143
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=55.13 E-value=1.9e+02 Score=27.43 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHHc-C-CeEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEAS-G-LSVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~~-~-l~l~Glh~H~gs~ 198 (409)
|.++.++++.+++. + +. .++|+|--.+
T Consensus 183 P~~v~~lv~~l~~~~~~~~-i~~H~Hn~~G 211 (287)
T PRK05692 183 PGQVRAVLEAVLAEFPAER-LAGHFHDTYG 211 (287)
T ss_pred HHHHHHHHHHHHHhCCCCe-EEEEecCCCC
Confidence 78888999888653 3 54 4788887443
No 144
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=54.66 E-value=2.1e+02 Score=27.83 Aligned_cols=127 Identities=18% Similarity=0.097 Sum_probs=70.0
Q ss_pred cHHHHHHHHHcCC-cEEEc-----------------CHHHHHHHHhCCCCCCcEEE-eCC-CCCHHHHHHHHHcCCcEE-
Q 015304 67 EPALLEALAALGS-NFDCA-----------------SRSEIEAVLALGVSPDRIIY-ANP-CKPVSHIKYAANVGVNLT- 125 (409)
Q Consensus 67 ~~~vl~~l~~~G~-g~~va-----------------S~~E~~~a~~~G~~~~~Ii~-~gp-~k~~~~i~~a~~~gv~~~- 125 (409)
...+++.|.+.|+ .+||. +..|.........+..++.. .-| .-+.++++.|.+.|+..+
T Consensus 27 ~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~ir 106 (337)
T PRK08195 27 VRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVR 106 (337)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEE
Confidence 3678899999999 88994 33454333322244445542 322 235789999999998743
Q ss_pred EecCHHHHHHHHh---HCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCH
Q 015304 126 TFDSVEELHKIRK---WHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKF 202 (409)
Q Consensus 126 ~vds~~el~~i~~---~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~ 202 (409)
...+.++.+.+.+ .+++...-+.+++-. . .-.+ ++++.++++.+.+.+.....+-=..|. ..+
T Consensus 107 i~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~--------a--~~~~--~e~l~~~a~~~~~~Ga~~i~i~DT~G~--~~P 172 (337)
T PRK08195 107 VATHCTEADVSEQHIGLARELGMDTVGFLMM--------S--HMAP--PEKLAEQAKLMESYGAQCVYVVDSAGA--LLP 172 (337)
T ss_pred EEEecchHHHHHHHHHHHHHCCCeEEEEEEe--------c--cCCC--HHHHHHHHHHHHhCCCCEEEeCCCCCC--CCH
Confidence 3344444444433 333333334444311 1 1234 677778887777777665544333333 345
Q ss_pred HHHHH
Q 015304 203 AAYRG 207 (409)
Q Consensus 203 ~~~~~ 207 (409)
+...+
T Consensus 173 ~~v~~ 177 (337)
T PRK08195 173 EDVRD 177 (337)
T ss_pred HHHHH
Confidence 44433
No 145
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=54.35 E-value=66 Score=28.98 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEE------EeC-CCC----CHHHHHHHHHcCCcEE---EecCHH
Q 015304 68 PALLEALAALGS--NFDCASRSEIEAVLALGVSPDRII------YAN-PCK----PVSHIKYAANVGVNLT---TFDSVE 131 (409)
Q Consensus 68 ~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii------~~g-p~k----~~~~i~~a~~~gv~~~---~vds~~ 131 (409)
..+++..+..|. -+||+|.+|...|.++||+ |+ |++ +.+ +-+.++.+.+.|+.++ .++|.+
T Consensus 117 ~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D---~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~ 193 (229)
T COG3010 117 EELIARIKYPGQLAMADCSTFEEGLNAHKLGFD---IIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPE 193 (229)
T ss_pred HHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCc---EEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHH
Confidence 345555555575 7899999999999999983 33 333 111 2245566677887544 468888
Q ss_pred HHHHHHhHC
Q 015304 132 ELHKIRKWH 140 (409)
Q Consensus 132 el~~i~~~~ 140 (409)
+..+..++.
T Consensus 194 ~Ak~a~~~G 202 (229)
T COG3010 194 QAKKAIEIG 202 (229)
T ss_pred HHHHHHHhC
Confidence 888877765
No 146
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.99 E-value=1.5e+02 Score=27.92 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=34.9
Q ss_pred HHHHHHHHH-cC----CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHc
Q 015304 68 PALLEALAA-LG----SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANV 120 (409)
Q Consensus 68 ~~vl~~l~~-~G----~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~ 120 (409)
...++.+++ .. +-+||.|.+|+..+.++|+ +.|.+.++ ++++++.+++.
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~Ga--DiI~LDn~--~~e~l~~~v~~ 222 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGA--DIVMCDNM--SVEEIKEVVAY 222 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCC--CEEEECCC--CHHHHHHHHHH
Confidence 344454544 23 3788999999999999997 45666665 67888888763
No 147
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=52.41 E-value=2e+02 Score=27.46 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhCCCcceEEecCcCCc------HHHHHHHHHcCC-cEE--E--cCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 39 LGVVVTLYNQMISKLPMIHPHYAVKCNPE------PALLEALAALGS-NFD--C--ASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~~~~i~yavKan~~------~~vl~~l~~~G~-g~~--v--aS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
.+...+.++++++.++ .+-..+++|.. ..+++.+.+.++ .+| + .....+..+++.. + -+|.....
T Consensus 161 ~~~d~~~v~~lr~~~g--~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~-~-ipIa~~E~ 236 (316)
T cd03319 161 LEDDIERIRAIREAAP--DARLRVDANQGWTPEEAVELLRELAELGVELIEQPVPAGDDDGLAYLRDKS-P-LPIMADES 236 (316)
T ss_pred hhhHHHHHHHHHHhCC--CCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHhcC-C-CCEEEeCC
Confidence 3556677888888776 45567888872 456666667776 666 2 2334444444431 2 24676776
Q ss_pred CCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCC
Q 015304 108 CKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHP 141 (409)
Q Consensus 108 ~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~ 141 (409)
..+.++++.+++.+ +..+.+| .+.+..++.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~ 276 (316)
T cd03319 237 CFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLAR 276 (316)
T ss_pred CCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHH
Confidence 67778888777754 3444554 6666666666543
No 148
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=51.97 E-value=1e+02 Score=28.85 Aligned_cols=147 Identities=15% Similarity=0.181 Sum_probs=72.3
Q ss_pred EEeHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHHc--CCcEEE---cCHHHHHHHHhCCC--CCCcEEEeCC
Q 015304 36 ILDLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAAL--GSNFDC---ASRSEIEAVLALGV--SPDRIIYANP 107 (409)
Q Consensus 36 v~d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~~--G~g~~v---aS~~E~~~a~~~G~--~~~~Ii~~gp 107 (409)
.++.+....-++.+.++ +..+++.+.+........++.+.+. +..+-+ .....++.+.++|. +.+.|-+..+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~ 95 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIA 95 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEec
Confidence 45555555555555442 2234555444322234555555553 232222 34666777777771 1244555444
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCe
Q 015304 108 CKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLS 187 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~ 187 (409)
.++..++. +.+.. .-++++.+....+.+++....+++++.+ .++ .+ ++.+.++++.+.+.++.
T Consensus 96 -~s~~~~~~--~~~~~--~~~~~~~~~~~i~~a~~~G~~v~~~~~~--------~~~--~~--~~~~~~~~~~~~~~G~~ 158 (268)
T cd07940 96 -TSDIHLKY--KLKKT--REEVLERAVEAVEYAKSHGLDVEFSAED--------ATR--TD--LDFLIEVVEAAIEAGAT 158 (268)
T ss_pred -CCHHHHHH--HhCCC--HHHHHHHHHHHHHHHHHcCCeEEEeeec--------CCC--CC--HHHHHHHHHHHHHcCCC
Confidence 23333332 22221 1133444444444433333445555421 122 34 66777777777777777
Q ss_pred EEEEEEeeCCCC
Q 015304 188 VVGVAFHIGSAA 199 (409)
Q Consensus 188 l~Glh~H~gs~~ 199 (409)
...|-=..|...
T Consensus 159 ~i~l~DT~G~~~ 170 (268)
T cd07940 159 TINIPDTVGYLT 170 (268)
T ss_pred EEEECCCCCCCC
Confidence 777777888753
No 149
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=51.85 E-value=1.5e+02 Score=27.39 Aligned_cols=62 Identities=26% Similarity=0.262 Sum_probs=39.6
Q ss_pred cceEEecCcCC-----cHHHHHHHHHcCC-cEEEc--CHHHHH----HHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 56 IHPHYAVKCNP-----EPALLEALAALGS-NFDCA--SRSEIE----AVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 56 ~~i~yavKan~-----~~~vl~~l~~~G~-g~~va--S~~E~~----~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
+.+...++.|+ ....++.+.+.|+ |+-+. ..+|.. .+++.|+ +.+++..|..+.+.++...+
T Consensus 77 ~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~--~~i~~i~P~T~~~~i~~i~~ 150 (242)
T cd04724 77 IPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGL--DLIFLVAPTTPDERIKKIAE 150 (242)
T ss_pred CCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHh
Confidence 33455567776 4667888888888 55551 334543 3445676 45777788777777777666
No 150
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=50.80 E-value=2.2e+02 Score=26.89 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=17.6
Q ss_pred cccHHHHHHHHHHc-CC--eEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEAS-GL--SVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~-~l--~l~Glh~H~gs 197 (409)
++++.++++.+++. ++ .-.|+|+|--.
T Consensus 185 p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~ 214 (279)
T cd07947 185 PRSVPKIIYGLRKDCGVPSENLEWHGHNDF 214 (279)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEecCCC
Confidence 46777888877653 43 24688888743
No 151
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=50.63 E-value=3.1e+02 Score=28.46 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=53.7
Q ss_pred CCCccEEEEeHHH-----HHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc--------C---------
Q 015304 29 FDEVPFYILDLGV-----VVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA--------S--------- 85 (409)
Q Consensus 29 ~~t~P~~v~d~~~-----l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va--------S--------- 85 (409)
.+- ...++|... ..+-++++|+.+|+..+. ++--.+++-++.+.++|+ ++-|. +
T Consensus 259 ag~-d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi--~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGV-DVVVLDSSQGDSIYQLEMIKYIKKTYPELDVI--GGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCC-CEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEE--EecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCC
Confidence 344 566666543 225567777777754442 233345666677777776 44331 1
Q ss_pred ----HHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 86 ----RSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 86 ----~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
..++..+.+. .+ -+|+..|..++..++..|+..|...+.+.+.
T Consensus 336 ~~~~i~~~~~~~~~-~~-vpVIadGGI~~~~di~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 336 QATAVYKVASIAAQ-HG-VPVIADGGISNSGHIVKALTLGASTVMMGSF 382 (505)
T ss_pred cccHHHHHHHHHHh-cC-CeEEEeCCCCCHHHHHHHHHcCCCEEEEchh
Confidence 1223322222 11 2577777777778888888777765555543
No 152
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=50.43 E-value=1e+02 Score=30.21 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=38.7
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC---cEEEcCHHH
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCASRSE 88 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~~E 88 (409)
|| |. +++.+.+.+-++.+++.++ +. -..+=+|| +.+.++.+.+.|+ .+.|-|..+
T Consensus 60 GT-Ps-~l~~~~l~~ll~~i~~~~~~~~--eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~ 121 (350)
T PRK08446 60 GT-PS-TVSAKFYEPIFEIISPYLSKDC--EITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNE 121 (350)
T ss_pred Cc-cc-cCCHHHHHHHHHHHHHhcCCCc--eEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCH
Confidence 45 54 3677778888888877654 33 44677888 4889999999996 455666644
No 153
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=49.53 E-value=2.2e+02 Score=27.60 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=52.6
Q ss_pred eHHHHHHHHHHHHHhCCCcceEEecCcC---CcHHHHHHHHHcCC-cEEEcCH---------------------------
Q 015304 38 DLGVVVTLYNQMISKLPMIHPHYAVKCN---PEPALLEALAALGS-NFDCASR--------------------------- 86 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i~yavKan---~~~~vl~~l~~~G~-g~~vaS~--------------------------- 86 (409)
|.+.+.++++.+++.++ +-+ .+|-. -....++.|.+.|+ +++|+..
T Consensus 162 df~~~~~~i~~l~~~~~-vPV--ivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~ 238 (326)
T cd02811 162 DFRGWLERIEELVKALS-VPV--IVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADW 238 (326)
T ss_pred CHHHHHHHHHHHHHhcC-CCE--EEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccc
Confidence 34445577888877653 212 25654 35788999999998 7777542
Q ss_pred -----HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 87 -----SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 87 -----~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
..+..+++. .+.-.|+.+|...+..++..|+..|...+.+.
T Consensus 239 g~~t~~~l~~~~~~-~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~ 284 (326)
T cd02811 239 GIPTAASLLEVRSA-LPDLPLIASGGIRNGLDIAKALALGADLVGMA 284 (326)
T ss_pred cccHHHHHHHHHHH-cCCCcEEEECCCCCHHHHHHHHHhCCCEEEEc
Confidence 122222232 11235777777777777777777777644443
No 154
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=49.41 E-value=2.3e+02 Score=26.65 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHHc-CCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEAS-GLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~-~l~l~Glh~H~gs 197 (409)
|.++.++++.+++. .-.-.|+|+|--.
T Consensus 177 P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 177 PAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 77888888877653 2134678888644
No 155
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=48.93 E-value=2.9e+02 Score=27.63 Aligned_cols=85 Identities=16% Similarity=0.310 Sum_probs=40.6
Q ss_pred cEEE--EeHHHHHHHHHHHHHhCCCc-ceEEecCcCC------cHHHHHHHHHcC----C--cEEEcCHHHH--HHHHhC
Q 015304 33 PFYI--LDLGVVVTLYNQMISKLPMI-HPHYAVKCNP------EPALLEALAALG----S--NFDCASRSEI--EAVLAL 95 (409)
Q Consensus 33 P~~v--~d~~~l~~n~~~~~~~~~~~-~i~yavKan~------~~~vl~~l~~~G----~--g~~vaS~~E~--~~a~~~ 95 (409)
|.++ +|...+.+..+-+ +.+++. ..+ +|.-. -+.+++.+++.| + .+-+..+++. +.+.++
T Consensus 173 p~L~vALD~~~~~~A~~i~-~~l~~~~~~~--iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~a 249 (391)
T PRK13307 173 PYLQVALDLPDLEEVERVL-SQLPKSDHII--IEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADA 249 (391)
T ss_pred ceEEEecCCCCHHHHHHHH-HhcccccceE--EEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhc
Confidence 5544 4444556555433 334432 111 34432 366677777765 1 3334555443 355667
Q ss_pred CCCCCcEEEeCCCCCHH----HHHHHHHcCCc
Q 015304 96 GVSPDRIIYANPCKPVS----HIKYAANVGVN 123 (409)
Q Consensus 96 G~~~~~Ii~~gp~k~~~----~i~~a~~~gv~ 123 (409)
|. +-+.+++-. +.+ .++.+.++|+.
T Consensus 250 GA--D~vTVH~ea-~~~ti~~ai~~akk~Gik 278 (391)
T PRK13307 250 TA--DAVVISGLA-PISTIEKAIHEAQKTGIY 278 (391)
T ss_pred CC--CEEEEeccC-CHHHHHHHHHHHHHcCCE
Confidence 75 345555432 222 33444456764
No 156
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.20 E-value=2.2e+02 Score=26.19 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHcCCc--EEEecCHHHHHHHHhH
Q 015304 109 KPVSHIKYAANVGVN--LTTFDSVEELHKIRKW 139 (409)
Q Consensus 109 k~~~~i~~a~~~gv~--~~~vds~~el~~i~~~ 139 (409)
.+++.++.+.+.|+. ..++++.++++.+.+.
T Consensus 219 ~~~~~i~~~~~~G~~v~vwtvn~~~~~~~~~~~ 251 (263)
T cd08567 219 VTKELVDEAHALGLKVVPWTVNDPEDMARLIDL 251 (263)
T ss_pred cCHHHHHHHHHCCCEEEEecCCCHHHHHHHHHc
Confidence 355666666666764 2366666666665543
No 157
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=47.57 E-value=1.9e+02 Score=27.96 Aligned_cols=47 Identities=19% Similarity=0.434 Sum_probs=29.9
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCc-ceEEecCc---CC---cHHHHHHHHHcCC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPMI-HPHYAVKC---NP---EPALLEALAALGS 79 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~~-~i~yavKa---n~---~~~vl~~l~~~G~ 79 (409)
|+ |+. .+-..|.+-++.+++ ++.+ .+....++ |+ +..+++.|.+.|.
T Consensus 145 GD-Pl~-~~~~~L~~ll~~l~~-i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~ 198 (321)
T TIGR03822 145 GD-PLV-LSPRRLGDIMARLAA-IDHVKIVRFHTRVPVADPARVTPALIAALKTSGK 198 (321)
T ss_pred CC-ccc-CCHHHHHHHHHHHHh-CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC
Confidence 67 874 355677777777775 5543 35555553 44 4677787777763
No 158
>PRK09989 hypothetical protein; Provisional
Probab=47.07 E-value=1.7e+02 Score=26.97 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeC-----CC--CCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 174 IVPLLEAAEASGLSVVGVAFHIG-----SA--ATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H~g-----s~--~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
..++.+.+++.||++.++|.-.+ .. ..+.....+.++.+.+.++.++++|.
T Consensus 42 ~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg~ 99 (258)
T PRK09989 42 TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALALNC 99 (258)
T ss_pred HHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhCc
Confidence 34555667788999998875432 10 01111122334556777888888876
No 159
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=47.01 E-value=92 Score=31.37 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=25.8
Q ss_pred CCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCC-CCCCCCCCcEEEE--cCCce
Q 015304 226 KMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFP-NELLPGSSLRVIS--EPGRF 280 (409)
Q Consensus 226 ~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~--EpGR~ 280 (409)
.+..|.+|||-|+.- +.+++ +.+-..|.++++ .. +..++.+ -|+.+
T Consensus 87 ~v~ti~~GGGTPslL----~~~~l-~~ll~~l~~~~~~~~----~~~EitiE~nP~~~ 135 (416)
T COG0635 87 EVKTIYFGGGTPSLL----SPEQL-ERLLKALRELFNDLD----PDAEITIEANPGTV 135 (416)
T ss_pred eEEEEEECCCccccC----CHHHH-HHHHHHHHHhcccCC----CCceEEEEeCCCCC
Confidence 488999999987642 22222 344455666663 11 2344444 47754
No 160
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.90 E-value=1.5e+02 Score=23.87 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=47.6
Q ss_pred CCcceEEecCcCCcHHHHHHHHHcCC-cEEEcCH--------HH-HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCc
Q 015304 54 PMIHPHYAVKCNPEPALLEALAALGS-NFDCASR--------SE-IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVN 123 (409)
Q Consensus 54 ~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~--------~E-~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~ 123 (409)
.++++.|--...+...+++.+.+.+. -+.+++. .| ++.+++.|.+.-.+++.| ...+++.+.+.+.|+.
T Consensus 26 ~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG-~~~~~~~~~~~~~G~d 104 (122)
T cd02071 26 AGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG-IIPPEDYELLKEMGVA 104 (122)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC-CCCHHHHHHHHHCCCC
Confidence 47888888888888999999999887 3444432 22 445566676422344444 3567788888899986
No 161
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=46.66 E-value=3.5e+02 Score=27.96 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=67.0
Q ss_pred CCCCccEEEEeHH-----HHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc--------C--------
Q 015304 28 EFDEVPFYILDLG-----VVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA--------S-------- 85 (409)
Q Consensus 28 ~~~t~P~~v~d~~-----~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va--------S-------- 85 (409)
+.+- -+.++|.. ...+.++++++.+|++.+. .+.-.+++-++.+.++|+ .+.|. +
T Consensus 251 ~ag~-d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~--aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~ 327 (495)
T PTZ00314 251 EAGV-DVLVVDSSQGNSIYQIDMIKKLKSNYPHVDII--AGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGR 327 (495)
T ss_pred HCCC-CEEEEecCCCCchHHHHHHHHHHhhCCCceEE--ECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCC
Confidence 3454 66677661 2356788899888865443 366678888899999998 55432 1
Q ss_pred -----HHHHH-HHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 86 -----RSEIE-AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 86 -----~~E~~-~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
..|+. .+.+.|+ .++..|..++..++..|+..|...+.+.+.
T Consensus 328 p~~~ai~~~~~~~~~~~v---~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 328 PQASAVYHVARYARERGV---PCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred ChHHHHHHHHHHHhhcCC---eEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 12333 2334564 588889999999999999999987777766
No 162
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.52 E-value=1.5e+02 Score=28.66 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=56.4
Q ss_pred EecCHHHHHHHHhHCCCCeE-EEEEecCCCCCCCCCCCCCcCCCCC---cccHHHHHHHHHHcCCeEEEEEEeeCCCC--
Q 015304 126 TFDSVEELHKIRKWHPKCDL-LIRIKPPDDSGAKHPLDSKYGVDHH---PQEIVPLLEAAEASGLSVVGVAFHIGSAA-- 199 (409)
Q Consensus 126 ~vds~~el~~i~~~~~~~~v-~lRv~~~~~~~~~~~~~srfGi~~~---~~~~~~~~~~~~~~~l~l~Glh~H~gs~~-- 199 (409)
...|+..|.++.+...+..| ..|++....+- .+...+|..+. .+++.++-+.+++.++++ .+|.+-..
T Consensus 47 ~~~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~---ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRL---S~Hp~qfi~L 120 (312)
T TIGR00629 47 GKANLRDTMKTLHWNIGHGIPFYRFSSSIFPF---ASHPDVGYDLVTFAQKELREIGELAKTHQHRL---TFHPGQFTQF 120 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEecCccccCc---CcCchhhhhHHHHHHHHHHHHHHHHHHcCeEE---EECCCccccC
Confidence 34566666666655433333 56887532111 01123344410 123333334445567765 58987643
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHcCCC------CCcEEeecCCCC
Q 015304 200 --TKFAAYRGAIAAAKAVFETAARLGNN------KMRVLDIGGGFS 237 (409)
Q Consensus 200 --~~~~~~~~~i~~~~~~~~~~~~~g~~------~~~~ldiGGG~~ 237 (409)
.+++.....++++..-.+.+..+|.+ ..-+|++||.++
T Consensus 121 nS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~g 166 (312)
T TIGR00629 121 TSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFG 166 (312)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCC
Confidence 34566666777776666676777752 133578888764
No 163
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=46.40 E-value=1.6e+02 Score=28.03 Aligned_cols=95 Identities=11% Similarity=0.184 Sum_probs=55.3
Q ss_pred CCCCcEEEeCCCC-CHHHHHHHHHcCCcEEEecCHHH------HHHHHhHCC--CCeEEEEEecCC-CCC--CCCCCCCC
Q 015304 97 VSPDRIIYANPCK-PVSHIKYAANVGVNLTTFDSVEE------LHKIRKWHP--KCDLLIRIKPPD-DSG--AKHPLDSK 164 (409)
Q Consensus 97 ~~~~~Ii~~gp~k-~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~~--~~~v~lRv~~~~-~~~--~~~~~~sr 164 (409)
++++++++.|--. ++++.+++.+.|+..+..+.+++ ++.+.+..+ ...+.|-++... ++. ....+-..
T Consensus 163 ~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDvlDps~aPgv~tp~p 242 (300)
T TIGR01229 163 ISPKNLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDGLDPSLAPATGTPVV 242 (300)
T ss_pred cCcccEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEeccccCcccCCCCCCCCC
Confidence 4567888887633 67788888899987666555543 222222221 114666665421 211 11122367
Q ss_pred cCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 165 YGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
.|++ ..|+..+++.+... -++.|+-+-
T Consensus 243 gGl~--~~e~~~~l~~i~~~-~~v~g~Div 269 (300)
T TIGR01229 243 GGLT--FREGLLIMEMLYET-GLLTALDVV 269 (300)
T ss_pred CCCC--HHHHHHHHHHHHhc-CCEEEEEEE
Confidence 8999 89999998887443 245555444
No 164
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=45.98 E-value=2.3e+02 Score=27.68 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=64.9
Q ss_pred cEEEEeHHH-----HHHHHHHHHHhCCCcceEEecCcC-CcHHHHHHHHHcCC-cEEEc--------C---------H--
Q 015304 33 PFYILDLGV-----VVTLYNQMISKLPMIHPHYAVKCN-PEPALLEALAALGS-NFDCA--------S---------R-- 86 (409)
Q Consensus 33 P~~v~d~~~-----l~~n~~~~~~~~~~~~i~yavKan-~~~~vl~~l~~~G~-g~~va--------S---------~-- 86 (409)
-+.++|... +.+-++.+|+.+|+. ..+|-| ..++-++.|.++|+ ++-|. + .
T Consensus 123 d~iviD~AhGhs~~~i~~ik~ir~~~p~~---~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqlt 199 (343)
T TIGR01305 123 KFICLDVANGYSEHFVEFVKLVREAFPEH---TIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLS 199 (343)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhhCCCC---eEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHH
Confidence 567777654 677788899999874 347887 47888999999998 66544 1 1
Q ss_pred --HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 87 --SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 87 --~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
.|...+ ++-..-+|+..|..+...++-.|+..|...+.+.
T Consensus 200 Av~~~a~a--a~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 200 AVIECADA--AHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHH--hccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 122211 2211236999999999999999999999867777
No 165
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=45.96 E-value=22 Score=31.13 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=48.8
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCH
Q 015304 33 PFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPV 111 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 111 (409)
-+|++|-.+++.-++.+++.=|+ ++++++ -.|.+++.+.+ +.+ -+|+-.|-..++
T Consensus 97 RiFliDS~al~~~~~~i~~~~PD~vEilPg----~~p~vi~~i~~-----------------~~~---~PiIAGGLI~~~ 152 (175)
T PF04309_consen 97 RIFLIDSSALETGIKQIEQSKPDAVEILPG----VMPKVIKKIRE-----------------ETN---IPIIAGGLIRTK 152 (175)
T ss_dssp EEE-SSHHHHHHHHHHHHHHT-SEEEEESC----CHHHHHCCCCC-----------------CCS---S-EEEESS--SH
T ss_pred EeeeecHHHHHHHHHHHhhcCCCEEEEchH----HHHHHHHHHHH-----------------hcC---CCEEeecccCCH
Confidence 57899999999999999988786 778766 34555554321 222 358888888999
Q ss_pred HHHHHHHHcCCcEEEecC
Q 015304 112 SHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 112 ~~i~~a~~~gv~~~~vds 129 (409)
+++..|+++|+..++..+
T Consensus 153 e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 153 EDVEEALKAGADAVSTSN 170 (175)
T ss_dssp HHHHHHCCTTCEEEEE--
T ss_pred HHHHHHHHcCCEEEEcCC
Confidence 999999999986555443
No 166
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=45.92 E-value=1.4e+02 Score=27.72 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=62.0
Q ss_pred eccccHHHHHHHHHhhcCCCCCccEE---EEe-----HHHHHHHHHHHHHhC-CCcceE-EecCcCCcHHHHHHHHHcCC
Q 015304 10 VTKEELTEFVRSTILKRQEFDEVPFY---ILD-----LGVVVTLYNQMISKL-PMIHPH-YAVKCNPEPALLEALAALGS 79 (409)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~t~P~~---v~d-----~~~l~~n~~~~~~~~-~~~~i~-yavKan~~~~vl~~l~~~G~ 79 (409)
++|.+.+|-|+.--...+-.++ .|. |+. ++.+.+.+++-+... .++.++ | |+.++..++.|.+.|+
T Consensus 70 aG~~ta~eAv~~a~lare~~~~-~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpy---c~dd~~~ar~l~~~G~ 145 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGT-DWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPY---CTDDPVLAKRLEDAGC 145 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCC-CeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEE---eCCCHHHHHHHHHcCC
Confidence 5677777777522222223344 442 111 222334444444332 255555 3 4677888888888876
Q ss_pred cEE------------EcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEe
Q 015304 80 NFD------------CASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF 127 (409)
Q Consensus 80 g~~------------vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~v 127 (409)
.+- +..++-++.+++. .+ -.++..|...++++...|++.|..-+.+
T Consensus 146 ~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~-vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 146 AAVMPLGSPIGSGQGLLNPYNLRIIIER-AD-VPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred CEeCCCCcCCCCCCCCCCHHHHHHHHHh-CC-CcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 332 2244445555554 22 3577777788888888888888764333
No 167
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=45.67 E-value=1.4e+02 Score=29.27 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHHcCCeE
Q 015304 171 PQEIVPLLEAAEASGLSV 188 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l 188 (409)
.+.+.++++.+++.++.+
T Consensus 116 ~~~v~~vv~~ak~~~ipI 133 (360)
T PRK00366 116 DERVREVVEAAKDYGIPI 133 (360)
T ss_pred HHHHHHHHHHHHHCCCCE
Confidence 466777777777766543
No 168
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=45.46 E-value=3e+02 Score=26.83 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=26.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCH-HHH-----HHHHHHHHHHHHHHHHcCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKF-AAY-----RGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~-~~~-----~~~i~~~~~~~~~~~~~g~ 224 (409)
.+.+.++++.+++.++.+. |-...||-..+. +.| ...++.+.+.++.+++++|
T Consensus 107 ~e~v~~vv~~ak~~~ipIR-IGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F 165 (346)
T TIGR00612 107 RERVRDVVEKARDHGKAMR-IGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGF 165 (346)
T ss_pred HHHHHHHHHHHHHCCCCEE-EecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3667777777777665432 333444422111 111 0123344455566777777
No 169
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.99 E-value=42 Score=31.72 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=53.0
Q ss_pred HHHHHHHhC--CCcceEEecCcCC-cHHHHHHHHHcC-C-----cEE------------EcCHHHHHHHHhCCCCC-CcE
Q 015304 45 LYNQMISKL--PMIHPHYAVKCNP-EPALLEALAALG-S-----NFD------------CASRSEIEAVLALGVSP-DRI 102 (409)
Q Consensus 45 n~~~~~~~~--~~~~i~yavKan~-~~~vl~~l~~~G-~-----g~~------------vaS~~E~~~a~~~G~~~-~~I 102 (409)
..+++.+.+ ++++++-.=|+.| ...+.+.....| . |.. .-+..|+....+...+. .+|
T Consensus 106 ~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I 185 (273)
T PRK05848 106 LTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKI 185 (273)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceE
Confidence 344444444 3567777777777 334444444443 1 221 23555655444555553 334
Q ss_pred EEeCCCCCHHHHHHHHHcCCcEEEecC--HHHHHHHHhH
Q 015304 103 IYANPCKPVSHIKYAANVGVNLTTFDS--VEELHKIRKW 139 (409)
Q Consensus 103 i~~gp~k~~~~i~~a~~~gv~~~~vds--~~el~~i~~~ 139 (409)
.. -.-+.++...|++.|+.++.+|+ .+++.++.+.
T Consensus 186 ~V--Ev~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~ 222 (273)
T PRK05848 186 EI--ECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAY 222 (273)
T ss_pred EE--EeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 43 23478999999999998777775 5566666554
No 170
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=44.54 E-value=83 Score=25.86 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=27.6
Q ss_pred CCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeC
Q 015304 163 SKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIG 196 (409)
Q Consensus 163 srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~g 196 (409)
+-|=+. .+|+..+++.+.+.||.++-||-|.-
T Consensus 61 Gd~vll--~~EV~pvi~aL~~~GI~vtAlHNH~l 92 (123)
T PF07485_consen 61 GDFVLL--EDEVNPVISALRKNGIEVTALHNHWL 92 (123)
T ss_pred ecEEec--HHHHHHHHHHHHHCCceEEEEecccc
Confidence 456677 89999999999999999999999973
No 171
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=44.45 E-value=72 Score=27.74 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC---cEEEcCHHHHHHHHh---CCCCCCcEEEeCCCCCHHHHH
Q 015304 42 VVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS---NFDCASRSEIEAVLA---LGVSPDRIIYANPCKPVSHIK 115 (409)
Q Consensus 42 l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~---g~~vaS~~E~~~a~~---~G~~~~~Ii~~gp~k~~~~i~ 115 (409)
+.+-++++++.+|.... --+-+....++.+ +.+.|+ -+|-.|+++++.+.+ ...+.-.|..+|. -+.+.++
T Consensus 66 i~~av~~~~~~~~~~~~-I~VEv~~~ee~~e-a~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGG-I~~~ni~ 142 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKK-IEVEVENLEEAEE-ALEAGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGG-ITLENIA 142 (169)
T ss_dssp HHHHHHHHHHHSTTTSE-EEEEESSHHHHHH-HHHTT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESS-SSTTTHH
T ss_pred HHHHHHHHHHhCCCCce-EEEEcCCHHHHHH-HHHhCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECC-CCHHHHH
Confidence 35556666666653221 2234444444333 223332 455556666555554 2212123444444 2444555
Q ss_pred HHHHcCCcEEEecC
Q 015304 116 YAANVGVNLTTFDS 129 (409)
Q Consensus 116 ~a~~~gv~~~~vds 129 (409)
.-.+.|+..+++.+
T Consensus 143 ~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 143 EYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHTT-SEEEECH
T ss_pred HHHhcCCCEEEcCh
Confidence 55555655444443
No 172
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=44.45 E-value=2.6e+02 Score=25.89 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=50.6
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC---cceEEecCcCCc---HHHHHHHHHcCC-cEEEc----CHHHHHHHHhCCCCCCc
Q 015304 33 PFYILDLGVVVTLYNQMISKLPM---IHPHYAVKCNPE---PALLEALAALGS-NFDCA----SRSEIEAVLALGVSPDR 101 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~---~~i~yavKan~~---~~vl~~l~~~G~-g~~va----S~~E~~~a~~~G~~~~~ 101 (409)
.+++.+.+. .+.++.+++..|+ +.+.|-+..... ....+.+...|+ ++... +..=++.+.+.|.. -
T Consensus 150 ~v~i~SF~~-~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~Gl~--v 226 (265)
T cd08564 150 QVHFSSFLH-YDRLDLLKALRPNKLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVNFSYDFWTEEFVKKAHENGLK--V 226 (265)
T ss_pred CEEEEecCc-hhHHHHHHHhCcCCCCceEEEEecCCCCcccccHHHHHHhcCCceeeechhhhhHHHHHHHHHcCCE--E
Confidence 555554443 2333455555554 556665543321 233444444444 33322 22334556666752 3
Q ss_pred EEEeC-C-CCCHHHHHHHHHcCCcEEEecCHHHHHH
Q 015304 102 IIYAN-P-CKPVSHIKYAANVGVNLTTFDSVEELHK 135 (409)
Q Consensus 102 Ii~~g-p-~k~~~~i~~a~~~gv~~~~vds~~el~~ 135 (409)
.+++. + ..+.++++.+++.|+.-+..|..+.+..
T Consensus 227 ~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~p~~~~~ 262 (265)
T cd08564 227 MTYFDEPVNDNEEDYKVYLELGVDCICPNDPVLLVN 262 (265)
T ss_pred EEecCCCCCCCHHHHHHHHHcCCCEEEcCCHHHHHH
Confidence 44541 1 2346777777788877566676665544
No 173
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=44.42 E-value=85 Score=30.92 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=34.3
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC---cEEEcCHH
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCASRS 87 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~~ 87 (409)
|| |.+ ++.+.+..-.+.+++ ++ ...+..++=+|+ +++.++.|.+.|+ .+.+-|..
T Consensus 60 Gt-ps~-l~~~~l~~L~~~i~~-~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~ 121 (374)
T PRK05799 60 GT-PTY-LSLEALEILKETIKK-LNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQ 121 (374)
T ss_pred Cc-ccC-CCHHHHHHHHHHHHh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCC
Confidence 45 654 366677766666654 43 122345566776 6799999999986 34454444
No 174
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=44.23 E-value=1.5e+02 Score=28.76 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCcceEEecCcC---CcHHHHHHHHHcCC-cEEEcCHH----------------------------
Q 015304 40 GVVVTLYNQMISKLPMIHPHYAVKCN---PEPALLEALAALGS-NFDCASRS---------------------------- 87 (409)
Q Consensus 40 ~~l~~n~~~~~~~~~~~~i~yavKan---~~~~vl~~l~~~G~-g~~vaS~~---------------------------- 87 (409)
+.+.++++.+++..+ +- ..+|-. -.+..++.|.+.|+ .++|+..+
T Consensus 165 ~~~le~i~~i~~~~~-vP--VivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t 241 (333)
T TIGR02151 165 KGWLEKIAEICSQLS-VP--VIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPT 241 (333)
T ss_pred HHHHHHHHHHHHhcC-CC--EEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhH
Confidence 445677888887653 21 235544 36788899999998 77776531
Q ss_pred --HHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcE
Q 015304 88 --EIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL 124 (409)
Q Consensus 88 --E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~ 124 (409)
.+..+++...+ -+|+.+|...+..++..++..|+..
T Consensus 242 ~~~l~~~~~~~~~-ipVIasGGI~~~~di~kaLalGAd~ 279 (333)
T TIGR02151 242 AASLLEVRSDAPD-APIIASGGLRTGLDVAKAIALGADA 279 (333)
T ss_pred HHHHHHHHhcCCC-CeEEEECCCCCHHHHHHHHHhCCCe
Confidence 11122221222 3567777777777777777777653
No 175
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=43.97 E-value=1.2e+02 Score=30.23 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=41.9
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC---cEEEcCHHH
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCASRSE 88 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~~E 88 (409)
-|| |. +++.+.|.+-++.+++.++ ....-.++=+|| +...++.|+++|+ .+.|-|..+
T Consensus 70 GGT-Ps-~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d 134 (390)
T PRK06582 70 GGT-PS-LMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKE 134 (390)
T ss_pred CCc-cc-cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCH
Confidence 356 63 4788889998999988663 111245677788 5889999999996 577777755
No 176
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=43.89 E-value=2.4e+02 Score=25.31 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCC-cEEEcCHHHHHHHHhC-----------CCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 68 PALLEALAALGS-NFDCASRSEIEAVLAL-----------GVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~~E~~~a~~~-----------G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
..+++.+.+.|+ .+++.+.+.++.+++. +++..+++ .|+ +.++++.+++.|+..+.+|
T Consensus 30 ~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~-ig~--~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 30 AAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVY-ITP--TIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCce-eCC--CHHHHHHHHHcCCCEEEEe
Confidence 466677777888 7778888888877764 22111111 233 3468899999999866664
No 177
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=43.80 E-value=3.7e+02 Score=28.56 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=11.5
Q ss_pred HHHHHHHHHhCCCcce
Q 015304 43 VTLYNQMISKLPMIHP 58 (409)
Q Consensus 43 ~~n~~~~~~~~~~~~i 58 (409)
.++++.+++.+|++.+
T Consensus 63 werl~~~r~~~pnt~l 78 (596)
T PRK14042 63 WSRLRQLRQALPNTQL 78 (596)
T ss_pred HHHHHHHHHhCCCCce
Confidence 5677888888886543
No 178
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=43.68 E-value=1.1e+02 Score=28.60 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=53.4
Q ss_pred cCCcHHHHHHHHHcCCcEE-------EcCHHHHHHHH----hCCCCCCcEEEeCCCCCHHHHHHHHHcCCc---EEEecC
Q 015304 64 CNPEPALLEALAALGSNFD-------CASRSEIEAVL----ALGVSPDRIIYANPCKPVSHIKYAANVGVN---LTTFDS 129 (409)
Q Consensus 64 an~~~~vl~~l~~~G~g~~-------vaS~~E~~~a~----~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~---~~~vds 129 (409)
.-++|.+++.+...|..|- ..+..++.... ..|.. .++-. |..++..++.+++.|.. +..|+|
T Consensus 26 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~--~lVRv-p~~~~~~i~r~LD~Ga~giivP~v~t 102 (256)
T PRK10558 26 ALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASA--PVVRV-PTNEPVIIKRLLDIGFYNFLIPFVET 102 (256)
T ss_pred cCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCC--cEEEC-CCCCHHHHHHHhCCCCCeeeecCcCC
Confidence 4568999999999986433 23455554322 34543 34433 44578999999998764 458999
Q ss_pred HHHHHHHHhHCCCCeEEE
Q 015304 130 VEELHKIRKWHPKCDLLI 147 (409)
Q Consensus 130 ~~el~~i~~~~~~~~v~l 147 (409)
.+|++.+.+..+-.+.+.
T Consensus 103 ae~a~~~v~a~kypP~G~ 120 (256)
T PRK10558 103 AEEARRAVASTRYPPEGI 120 (256)
T ss_pred HHHHHHHHHHcCCCCCCc
Confidence 999999988754333333
No 179
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=43.65 E-value=2.8e+02 Score=25.94 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=37.9
Q ss_pred cHHHHHHHHHc-CC--cEEEcCHHHHHHHHhC--CCCCCcEEEeCCC---CCHHHHHHHHHcCCcEE
Q 015304 67 EPALLEALAAL-GS--NFDCASRSEIEAVLAL--GVSPDRIIYANPC---KPVSHIKYAANVGVNLT 125 (409)
Q Consensus 67 ~~~vl~~l~~~-G~--g~~vaS~~E~~~a~~~--G~~~~~Ii~~gp~---k~~~~i~~a~~~gv~~~ 125 (409)
..++++.+.+. ++ .+|..++.-++.+++. |. .|+..=.. +.++-++.+.++|+.++
T Consensus 57 ~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~---~iINsIs~~~~~~~~~~~l~~~~g~~vv 120 (261)
T PRK07535 57 MEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGP---PLINSVSAEGEKLEVVLPLVKKYNAPVV 120 (261)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCC---CEEEeCCCCCccCHHHHHHHHHhCCCEE
Confidence 45577777653 54 8999999999999998 63 46544222 23455677778888644
No 180
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=43.47 E-value=89 Score=29.64 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.8
Q ss_pred EEEeC-CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH
Q 015304 102 IIYAN-PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKW 139 (409)
Q Consensus 102 Ii~~g-p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~ 139 (409)
++++| .+-+.++|+.|+++|+.-+|+|+.-++..+..+
T Consensus 207 lVlHGgSGip~~eI~~aI~~GV~KvNi~Td~~~A~~~av 245 (286)
T COG0191 207 LVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAV 245 (286)
T ss_pred EEEeCCCCCCHHHHHHHHHhCceEEeeCcHHHHHHHHHH
Confidence 77774 467889999999999977899988777766543
No 181
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.42 E-value=3.7e+02 Score=27.37 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHH-cCCeEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEA-SGLSVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~l~Glh~H~gs~ 198 (409)
|.++.++++.+++ .++. .++|+|-..+
T Consensus 182 P~~v~~lv~alk~~~~~p-i~~H~Hnt~G 209 (448)
T PRK12331 182 PYVAYELVKRIKEAVTVP-LEVHTHATSG 209 (448)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEecCCCC
Confidence 7888889988866 3644 5788887554
No 182
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.22 E-value=1.9e+02 Score=23.92 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=53.2
Q ss_pred eHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHH---------HHHHHhCCCCCCcEEEeCC
Q 015304 38 DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCASRSE---------IEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E---------~~~a~~~G~~~~~Ii~~gp 107 (409)
|...+..|+-+..=...++++.+.=.-.+...+++...+.++ -+.++|..+ ++.+++.|.+ +..++.|.
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~-~i~vivGG 91 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP-DILVVVGG 91 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCC-CCEEEEeC
Confidence 334455554332211246888877777777889999998887 455555443 2234445753 44466665
Q ss_pred CCCHHHHHHHHHcCCc
Q 015304 108 CKPVSHIKYAANVGVN 123 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~ 123 (409)
....++.+...+.|+.
T Consensus 92 ~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 92 VIPPQDFDELKEMGVA 107 (132)
T ss_pred CCChHhHHHHHHCCCC
Confidence 5667788888899986
No 183
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.21 E-value=2.9e+02 Score=26.92 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=41.6
Q ss_pred CHHHHHHHHHcCCcEE-EecCHHHHHHHHh---HCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcC
Q 015304 110 PVSHIKYAANVGVNLT-TFDSVEELHKIRK---WHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASG 185 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~-~vds~~el~~i~~---~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~ 185 (409)
+.++++.|.+.|+..+ ...+..+.+.+.+ .+++...-+.+++-. . +..+ ++++.+.++.+.+.+
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~--------s--~~~~--~e~l~~~a~~~~~~G 156 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMM--------S--HMTP--PEKLAEQAKLMESYG 156 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEc--------c--cCCC--HHHHHHHHHHHHhcC
Confidence 4577888888777533 2334434333322 233322333333310 0 2234 667777777766667
Q ss_pred CeEEEEEEeeCCCC
Q 015304 186 LSVVGVAFHIGSAA 199 (409)
Q Consensus 186 l~l~Glh~H~gs~~ 199 (409)
.....|-=..|...
T Consensus 157 a~~i~i~DT~G~~~ 170 (333)
T TIGR03217 157 ADCVYIVDSAGAML 170 (333)
T ss_pred CCEEEEccCCCCCC
Confidence 77777777777653
No 184
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=43.20 E-value=1.2e+02 Score=28.52 Aligned_cols=75 Identities=12% Similarity=0.153 Sum_probs=51.0
Q ss_pred cCCcHHHHHHHHHcCCcEE-------EcCHHHHHH----HHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCc---EEEecC
Q 015304 64 CNPEPALLEALAALGSNFD-------CASRSEIEA----VLALGVSPDRIIYANPCKPVSHIKYAANVGVN---LTTFDS 129 (409)
Q Consensus 64 an~~~~vl~~l~~~G~g~~-------vaS~~E~~~----a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~---~~~vds 129 (409)
.-++|.+++.+...|..|- .-+..++.. +...|.. .++-. |..++..++.+++.|.. +..|+|
T Consensus 25 ~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~--~lVRv-p~~~~~~i~r~LD~GA~GIivP~V~s 101 (267)
T PRK10128 25 SSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQ--PVIRP-VEGSKPLIKQVLDIGAQTLLIPMVDT 101 (267)
T ss_pred cCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCC--eEEEC-CCCCHHHHHHHhCCCCCeeEecCcCC
Confidence 4467999999999986332 234555542 2234553 34433 44578899999998764 458999
Q ss_pred HHHHHHHHhHCC
Q 015304 130 VEELHKIRKWHP 141 (409)
Q Consensus 130 ~~el~~i~~~~~ 141 (409)
.+|.+.+.+..+
T Consensus 102 aeeA~~~V~a~r 113 (267)
T PRK10128 102 AEQARQVVSATR 113 (267)
T ss_pred HHHHHHHHHhcC
Confidence 999999988753
No 185
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=43.14 E-value=79 Score=31.33 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=53.8
Q ss_pred CCCCccEEEE-------eHHHHHHHHHHHHHhCCCcceEEecCcC-CcHHHHHHHHHcCCcEEEcCHHHHHHHH------
Q 015304 28 EFDEVPFYIL-------DLGVVVTLYNQMISKLPMIHPHYAVKCN-PEPALLEALAALGSNFDCASRSEIEAVL------ 93 (409)
Q Consensus 28 ~~~t~P~~v~-------d~~~l~~n~~~~~~~~~~~~i~yavKan-~~~~vl~~l~~~G~g~~vaS~~E~~~a~------ 93 (409)
..+- |+.+. |.+.|+.-.+.+... +. +.|+.-.. ....+++...+.|+.+-+.|+.|+.++.
T Consensus 186 av~v-PLIL~gsg~~~kD~eVLeaaLe~~~G~--kp-LL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~kL 261 (389)
T TIGR00381 186 AVDV-PIVIGGSGNPEKDPLVLEKAAEVAEGE--RC-LLASANLDLDYEKIANAAKKYGHVVLSWTIMDINMQKTLNRYL 261 (389)
T ss_pred hCCC-CEEEeCCCCCcCCHHHHHHHHHHhCCC--Cc-EEEecCchhhHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHHHH
Confidence 4555 99888 777777766555321 23 44554444 5678999999999999998866654443
Q ss_pred -hCCCCCCcEEEeCCC
Q 015304 94 -ALGVSPDRIIYANPC 108 (409)
Q Consensus 94 -~~G~~~~~Ii~~gp~ 108 (409)
+.|+++++|++....
T Consensus 262 ~~~Gv~~eDIVlDP~t 277 (389)
T TIGR00381 262 LKRGLMPRDIVMDPTT 277 (389)
T ss_pred HHcCCCHHHEEEcCCC
Confidence 469999999987553
No 186
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.68 E-value=2.3e+02 Score=25.40 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=66.7
Q ss_pred EeHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHHc--CC--cEE-EcCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 37 LDLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAAL--GS--NFD-CASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~~--G~--g~~-vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
.+.+......+.+.+. ++.+++.+- +-.....++.+.+. ++ |+. |-+.++++.+.++|. +.++ .|+.+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~--tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA---~Fiv-SP~~~ 86 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR--TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS---RFIV-SPGTT 86 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC--CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC---CEEE-CCCCC
Confidence 3455555555555543 334555543 22234555555543 23 443 677888899999985 4554 56678
Q ss_pred HHHHHHHHHcCCcE-EEecCHHHHHHHHhHCCCCeEEEEEec
Q 015304 111 VSHIKYAANVGVNL-TTFDSVEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 111 ~~~i~~a~~~gv~~-~~vds~~el~~i~~~~~~~~v~lRv~~ 151 (409)
++-++.+.++|+.. .=+-+..|+....+..-+ .+++-|
T Consensus 87 ~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~---~vK~FP 125 (201)
T PRK06015 87 QELLAAANDSDVPLLPGAATPSEVMALREEGYT---VLKFFP 125 (201)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCC---EEEECC
Confidence 89999999999863 367788888877666432 367766
No 187
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=42.65 E-value=1.5e+02 Score=29.13 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc---------------CHHHHHHHHhCCCCCCcEEEeC
Q 015304 43 VTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA---------------SRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 43 ~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va---------------S~~E~~~a~~~G~~~~~Ii~~g 106 (409)
-++++.+++..+ +=..+|---++.-++.+.+.|+ +++|+ ++.|+..+. + +.-.|+..|
T Consensus 214 w~~i~~~~~~~~---~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~--~-~~~~i~~dg 287 (356)
T PF01070_consen 214 WDDIEWIRKQWK---LPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAV--G-DDIPIIADG 287 (356)
T ss_dssp HHHHHHHHHHCS---SEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHH--T-TSSEEEEES
T ss_pred HHHHHHHhcccC---CceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhh--c-CCeeEEEeC
Confidence 366888888765 2235777788999999999999 99998 334444433 3 224789999
Q ss_pred CCCCHHHHHHHHHcCCcEE
Q 015304 107 PCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~ 125 (409)
...+..++-.|+..|...+
T Consensus 288 Gir~g~Dv~kalaLGA~~v 306 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAV 306 (356)
T ss_dssp S--SHHHHHHHHHTT-SEE
T ss_pred CCCCHHHHHHHHHcCCCeE
Confidence 9999999999999999843
No 188
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=42.37 E-value=1.1e+02 Score=30.25 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS 79 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~ 79 (409)
|| |. +++.+.|.+-++.+++.++ .....+++-+|| ..+.++.|.++|+
T Consensus 68 GT-Ps-~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~ 119 (375)
T PRK05628 68 GT-PS-LLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGF 119 (375)
T ss_pred Cc-cc-cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCC
Confidence 45 54 3566788888888888764 122356677787 5789999999986
No 189
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=42.33 E-value=2.1e+02 Score=25.01 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=48.8
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCH
Q 015304 33 PFYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPV 111 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~ 111 (409)
-+|++|-.++.+-+..+.+.=|+ +++.+- -.|.+++.+.+ +..+ +|+-.|-..+.
T Consensus 101 R~FilDS~Al~~~~~~i~~~~pD~iEvLPG----v~Pkvi~~i~~-----------------~t~~---piIAGGLi~t~ 156 (181)
T COG1954 101 RLFILDSIALEKGIKQIEKSEPDFIEVLPG----VMPKVIKEITE-----------------KTHI---PIIAGGLIETE 156 (181)
T ss_pred eeeeecHHHHHHHHHHHHHcCCCEEEEcCc----ccHHHHHHHHH-----------------hcCC---CEEeccccccH
Confidence 46889999999888888876565 455443 25777776633 3433 57777778888
Q ss_pred HHHHHHHHcCCcEE
Q 015304 112 SHIKYAANVGVNLT 125 (409)
Q Consensus 112 ~~i~~a~~~gv~~~ 125 (409)
++.+.|+++|...+
T Consensus 157 Eev~~Al~aGA~av 170 (181)
T COG1954 157 EEVREALKAGAVAV 170 (181)
T ss_pred HHHHHHHHhCcEEE
Confidence 88888998888533
No 190
>PRK09389 (R)-citramalate synthase; Provisional
Probab=42.24 E-value=4.1e+02 Score=27.43 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHH-cCCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEA-SGLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~l~Glh~H~gs 197 (409)
|+++.++++.+++ .++ ..|+|+|--.
T Consensus 171 P~~~~~lv~~l~~~~~v-~l~~H~HND~ 197 (488)
T PRK09389 171 PEKTYELFKRLSELVKG-PVSIHCHNDF 197 (488)
T ss_pred HHHHHHHHHHHHhhcCC-eEEEEecCCc
Confidence 7888888888865 355 3589999643
No 191
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=41.93 E-value=1.6e+02 Score=28.47 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=59.0
Q ss_pred EeHHHHHHHHHHHHHhCCC---cceEEecCcCCcH----------HHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 37 LDLGVVVTLYNQMISKLPM---IHPHYAVKCNPEP----------ALLEALAALGSNFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~---~~i~yavKan~~~----------~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
.+.+.+++.++++++..++ +.+++.-+..... .+.+...+.|.. -...+..+.+.+ ++-++
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~v~ 118 (330)
T PF03060_consen 45 LTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVP----FEEQLDVALEAK--PDVVS 118 (330)
T ss_dssp SSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-S----HHHHHHHHHHS----SEEE
T ss_pred cChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcc----cccccccccccc--eEEEE
Confidence 4568999999999987652 3333222211111 234555555655 333455566664 45566
Q ss_pred EeCCCCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhHCC
Q 015304 104 YANPCKPVSHIKYAANVGVNL-TTFDSVEELHKIRKWHP 141 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~~gv~~-~~vds~~el~~i~~~~~ 141 (409)
+.....+++.++.+.+.|+.+ ..+-|.+++.++.+...
T Consensus 119 ~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~ 157 (330)
T PF03060_consen 119 FGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGA 157 (330)
T ss_dssp EESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-
T ss_pred eecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCC
Confidence 665544578888888999864 48999999999888763
No 192
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=41.85 E-value=2.9e+02 Score=26.23 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=25.5
Q ss_pred EeHHHHHHHHHHHHHhCCCcceEEecCcCCc----HHHHHHHHHcCC-cEEE
Q 015304 37 LDLGVVVTLYNQMISKLPMIHPHYAVKCNPE----PALLEALAALGS-NFDC 83 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~~~i~yavKan~~----~~vl~~l~~~G~-g~~v 83 (409)
-+.+.+.+-++++++.. + +-..+|-++. ..+++.+.+.|+ ++.+
T Consensus 140 ~~~~~~~eiv~~vr~~~-~--~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV-K--VPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred cCHHHHHHHHHHHHHhc-C--CCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 34556666677776654 2 2223555542 456777777777 5655
No 193
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=41.78 E-value=2.6e+02 Score=25.14 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCC-cEEEcCH-----------HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 68 PALLEALAALGS-NFDCASR-----------SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
..+++.+.+.|+ ++-+.+. .-++.+.+. .+ -+++.+|...+.++++.+++.|+.-+.+.
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-~~-ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-TG-IPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-cC-CCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 466777777776 4444432 223333332 12 35788888888888888888777644444
No 194
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=41.68 E-value=1.2e+02 Score=28.10 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=51.8
Q ss_pred cCCcHHHHHHHHHcCCcEE-------EcCHHHHHHHH---h-CCCCCCcEEEeCCCCCHHHHHHHHHcCCc---EEEecC
Q 015304 64 CNPEPALLEALAALGSNFD-------CASRSEIEAVL---A-LGVSPDRIIYANPCKPVSHIKYAANVGVN---LTTFDS 129 (409)
Q Consensus 64 an~~~~vl~~l~~~G~g~~-------vaS~~E~~~a~---~-~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~---~~~vds 129 (409)
.-++|.+++++...|..|- ..+..++..+. + .|.+ .++-. |..++..++.+++.|.. +..|+|
T Consensus 19 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~--~~VRv-p~~~~~~i~r~LD~Ga~gIivP~v~t 95 (249)
T TIGR03239 19 ALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASA--PVVRP-PWNEPVIIKRLLDIGFYNFLIPFVES 95 (249)
T ss_pred cCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCC--cEEEC-CCCCHHHHHHHhcCCCCEEEecCcCC
Confidence 4568999999999986332 23445554333 2 4543 35443 44678999999998764 458999
Q ss_pred HHHHHHHHhHCC
Q 015304 130 VEELHKIRKWHP 141 (409)
Q Consensus 130 ~~el~~i~~~~~ 141 (409)
.+|++.+.+..+
T Consensus 96 aeea~~~v~a~k 107 (249)
T TIGR03239 96 AEEAERAVAATR 107 (249)
T ss_pred HHHHHHHHHHcC
Confidence 999999987754
No 195
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.41 E-value=2.4e+02 Score=25.32 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=65.4
Q ss_pred EeHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHHc-C-C--cEE-EcCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 37 LDLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAAL-G-S--NFD-CASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~~-G-~--g~~-vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
.+.+...+..+.+.+. ++-+++.+- +.....+++.+.+. + + |+. |.+.++++.+.++|. +.+ .+|+.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~--t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA---~Fi-vsP~~~ 90 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLR--TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA---QFI-VSPGLT 90 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC--CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC---CEE-ECCCCC
Confidence 3455555555555542 333455542 22234556666543 2 3 433 678888999999984 455 466678
Q ss_pred HHHHHHHHHcCCcE-EEecCHHHHHHHHhHCCCCeEEEEEec
Q 015304 111 VSHIKYAANVGVNL-TTFDSVEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 111 ~~~i~~a~~~gv~~-~~vds~~el~~i~~~~~~~~v~lRv~~ 151 (409)
++-++.+.++|+.. .=+-+..|+..-.+..-+ .+++-|
T Consensus 91 ~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~---~vKlFP 129 (204)
T TIGR01182 91 PELAKHAQDHGIPIIPGVATPSEIMLALELGIT---ALKLFP 129 (204)
T ss_pred HHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCC---EEEECC
Confidence 88889999999863 366788888777665432 366766
No 196
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=41.27 E-value=2.2e+02 Score=27.55 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=50.7
Q ss_pred EeHHHHHHHHHHHHHhCC--CcceEEecCcCC------cHHHHHHHHHcCC-cEEEcCH---------------------
Q 015304 37 LDLGVVVTLYNQMISKLP--MIHPHYAVKCNP------EPALLEALAALGS-NFDCASR--------------------- 86 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~--~~~i~yavKan~------~~~vl~~l~~~G~-g~~vaS~--------------------- 86 (409)
.|.+.+.+-++++++... +..+=..+|-.+ ...+++.+.+.|+ ++.+.+.
T Consensus 180 ~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG 259 (327)
T cd04738 180 QGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG 259 (327)
T ss_pred cCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC
Confidence 456778888888887653 001112355544 3568888888998 7775541
Q ss_pred --------HHHHHHHhCCCC-CCcEEEeCCCCCHHHHHHHHHcCCcE
Q 015304 87 --------SEIEAVLALGVS-PDRIIYANPCKPVSHIKYAANVGVNL 124 (409)
Q Consensus 87 --------~E~~~a~~~G~~-~~~Ii~~gp~k~~~~i~~a~~~gv~~ 124 (409)
.-+..+++. ++ .-.|+-+|...+.++....+..|+..
T Consensus 260 ~~~~~~~l~~v~~l~~~-~~~~ipIi~~GGI~t~~da~e~l~aGAd~ 305 (327)
T cd04738 260 APLKERSTEVLRELYKL-TGGKIPIIGVGGISSGEDAYEKIRAGASL 305 (327)
T ss_pred hhhhHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHHHHHHHHcCCCH
Confidence 222222222 11 12466677777777777777777653
No 197
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=40.96 E-value=3.5e+02 Score=27.14 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEe-e------------CCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcC
Q 015304 174 IVPLLEAAEASGLSVVGVAFH-I------------GSA-ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFT 239 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H-~------------gs~-~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~ 239 (409)
..++-+.+++.|+.+.|+-.- + ||- ..|++.-..+++..++++++.+++|- +.-.|=+|=|+-.+
T Consensus 100 ~~elk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~elGs-~~v~IW~gDG~~yP 178 (412)
T TIGR02629 100 PKELKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKALGS-KALTVWIGDGSNFP 178 (412)
T ss_pred HHHHHHHHHHcCCccceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhCC-CeeEEECCCCCCCc
Confidence 344445566778888766433 1 332 12444445678888999999999997 44355568887755
Q ss_pred CCCCC--CHHHHHHHHHHHHH
Q 015304 240 NSNTK--SFQEAASIIKEALH 258 (409)
Q Consensus 240 ~~~~~--~~~~~~~~i~~~l~ 258 (409)
..... .++.+.+.+++...
T Consensus 179 ~Q~~~~~~~~rl~esL~eI~~ 199 (412)
T TIGR02629 179 GQSNFTRAFERYLDAMKAVYA 199 (412)
T ss_pred CccchHHHHHHHHHHHHHHHh
Confidence 33222 34444444444443
No 198
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=39.98 E-value=3.4e+02 Score=26.79 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=9.2
Q ss_pred cCHHHHHHHHhCCC
Q 015304 84 ASRSEIEAVLALGV 97 (409)
Q Consensus 84 aS~~E~~~a~~~G~ 97 (409)
-+.+++..++++|+
T Consensus 161 lt~e~l~~Lk~aGv 174 (371)
T PRK09240 161 LSEEEYAELVELGL 174 (371)
T ss_pred CCHHHHHHHHHcCC
Confidence 56666666666665
No 199
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=39.92 E-value=66 Score=27.98 Aligned_cols=60 Identities=20% Similarity=0.410 Sum_probs=28.3
Q ss_pred CHHHHHHHHHcCCcEEEecC--HHHHHHHHh----HCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH
Q 015304 110 PVSHIKYAANVGVNLTTFDS--VEELHKIRK----WHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA 183 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~~vds--~~el~~i~~----~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~ 183 (409)
+.++++.|++.|+..+.+|+ .+++..+.+ ..++ +.|-++. |++ .+.+.+.. .
T Consensus 89 ~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~--v~ie~SG--------------GI~--~~ni~~ya----~ 146 (169)
T PF01729_consen 89 NLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPR--VKIEASG--------------GIT--LENIAEYA----K 146 (169)
T ss_dssp SHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTT--SEEEEES--------------SSS--TTTHHHHH----H
T ss_pred CHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCc--EEEEEEC--------------CCC--HHHHHHHH----h
Confidence 34555555555554444443 334433332 2333 4454442 666 77766553 3
Q ss_pred cCCeEEEE
Q 015304 184 SGLSVVGV 191 (409)
Q Consensus 184 ~~l~l~Gl 191 (409)
.++...++
T Consensus 147 ~gvD~isv 154 (169)
T PF01729_consen 147 TGVDVISV 154 (169)
T ss_dssp TT-SEEEE
T ss_pred cCCCEEEc
Confidence 45555544
No 200
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=39.21 E-value=3.6e+02 Score=25.97 Aligned_cols=76 Identities=24% Similarity=0.386 Sum_probs=47.0
Q ss_pred HHHHHHHHhCC--CCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCC
Q 015304 86 RSEIEAVLALG--VSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDS 163 (409)
Q Consensus 86 ~~E~~~a~~~G--~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~s 163 (409)
.+++..+..+| |.|=--+|.....++++|+.|.+.|+. ..+++-|. ...|.|
T Consensus 57 r~rIl~a~p~~~~F~PLMtlYLtd~~~peel~~a~~~g~i---------------------~a~KlYPa-----GaTTNS 110 (344)
T COG0418 57 RERILKAVPAGHRFTPLMTLYLTDSTTPEELEEAKAKGVI---------------------RAVKLYPA-----GATTNS 110 (344)
T ss_pred HHHHHHhCcCCCCCceeEEEEecCCCCHHHHHHHHhcCcE---------------------EEEEeccC-----CccccC
Confidence 44566666666 555445577777899999999998862 23445441 223567
Q ss_pred CcCCCCCcccHHHHHHHHHHcCCeE
Q 015304 164 KYGVDHHPQEIVPLLEAAEASGLSV 188 (409)
Q Consensus 164 rfGi~~~~~~~~~~~~~~~~~~l~l 188 (409)
..|++. .+.+..+++.+++.|+-+
T Consensus 111 ~~GV~~-~~~~~pvle~Mq~~gmpL 134 (344)
T COG0418 111 DSGVTD-IEKIYPVLEAMQKIGMPL 134 (344)
T ss_pred cCCcCc-HHHHHHHHHHHHHcCCeE
Confidence 888862 345555666666667644
No 201
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=38.74 E-value=2.4e+02 Score=26.23 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCCC--CCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHH
Q 015304 174 IVPLLEAAEASGLSVVGVAFHIGSAA--TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAAS 251 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H~gs~~--~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~ 251 (409)
+...++.++..+.+.. -+|.|+.. ...+.+...++.++++.+.+++.|+ .+.+=+.++.+. ....+++++.+
T Consensus 87 ~~~~i~~A~~lG~~~v--~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi-~l~lEn~~~~~~---~~~~t~~~~~~ 160 (279)
T cd00019 87 LKDEIERCEELGIRLL--VFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGV-VIALETMAGQGN---EIGSSFEELKE 160 (279)
T ss_pred HHHHHHHHHHcCCCEE--EECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCC-EEEEeCCCCCCC---CCCCCHHHHHH
Confidence 4455555566677654 45777643 2344556677777888888888887 665556655431 01234554433
Q ss_pred HHHHHHHhhCCCCCCCCCCcEEEEcCCceee
Q 015304 252 IIKEALHAYFPNELLPGSSLRVISEPGRFFT 282 (409)
Q Consensus 252 ~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv 282 (409)
. +++.. . .|.+.+.+-+|-+..
T Consensus 161 l----i~~v~-~----~~~~g~~lD~~h~~~ 182 (279)
T cd00019 161 I----IDLIK-E----KPRVGVCIDTCHIFA 182 (279)
T ss_pred H----HHhcC-C----CCCeEEEEEhhhHHh
Confidence 3 33321 0 145667777776543
No 202
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=38.58 E-value=3.2e+02 Score=25.80 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=19.7
Q ss_pred EeHHHHHHHHHHHHHhCCCcceEEecCcCC----cHHHHHHHHHcCC-cEEE
Q 015304 37 LDLGVVVTLYNQMISKLPMIHPHYAVKCNP----EPALLEALAALGS-NFDC 83 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~~~i~yavKan~----~~~vl~~l~~~G~-g~~v 83 (409)
-+.+.+.+-++++++.. + +-..+|-.+ ..++++.+.+.|+ ++.+
T Consensus 137 ~~~~~~~eiv~~vr~~~-~--~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 137 TDPEAVAEIVKAVKKAT-D--VPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CCHHHHHHHHHHHHhcc-C--CCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 34444555555555543 1 112234333 2245555556665 4443
No 203
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=38.19 E-value=3.7e+02 Score=26.78 Aligned_cols=41 Identities=10% Similarity=0.286 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAA 211 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~ 211 (409)
.+++.+.++.+++.++.-..+.+-.|-...+.+.|.+.++.
T Consensus 150 ~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~ 190 (400)
T PRK07379 150 VKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEA 190 (400)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHH
Confidence 78888888888888887666777777555566666554443
No 204
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=37.88 E-value=2.3e+02 Score=23.40 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=45.4
Q ss_pred HHHhCCCCCCcEEEeCCCCCHHHH-HHHHHcCCcEEEec-----CHHHHHHHHhHCCCCeE-EEEEecCCCCCCCCCCCC
Q 015304 91 AVLALGVSPDRIIYANPCKPVSHI-KYAANVGVNLTTFD-----SVEELHKIRKWHPKCDL-LIRIKPPDDSGAKHPLDS 163 (409)
Q Consensus 91 ~a~~~G~~~~~Ii~~gp~k~~~~i-~~a~~~gv~~~~vd-----s~~el~~i~~~~~~~~v-~lRv~~~~~~~~~~~~~s 163 (409)
.++.+|| ++++.|...+++++ +.|.++++..+.+. +.+.+..+.+..++..+ .+.|-. |+
T Consensus 22 ~L~~~Gf---eVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv----------GG 88 (128)
T cd02072 22 AFTEAGF---NVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV----------GG 88 (128)
T ss_pred HHHHCCC---EEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE----------EC
Confidence 4567887 58889988787665 55567777654443 34444444333221111 122221 34
Q ss_pred CcCCCCCcccHHHHHHHHHHcCC
Q 015304 164 KYGVDHHPQEIVPLLEAAEASGL 186 (409)
Q Consensus 164 rfGi~~~~~~~~~~~~~~~~~~l 186 (409)
-..++ ++++.+..+++++.|+
T Consensus 89 ~~~i~--~~d~~~~~~~L~~~Gv 109 (128)
T cd02072 89 NLVVG--KQDFEDVEKRFKEMGF 109 (128)
T ss_pred CCCCC--hhhhHHHHHHHHHcCC
Confidence 45555 6677666666777665
No 205
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.85 E-value=1.1e+02 Score=28.72 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhCCCcceEEecCcCC----cHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHH
Q 015304 41 VVVTLYNQMISKLPMIHPHYAVKCNP----EPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKY 116 (409)
Q Consensus 41 ~l~~n~~~~~~~~~~~~i~yavKan~----~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~ 116 (409)
++...++++++.-.+.-+-|.+=..| ..++++.|.+.|+. ++++|+|-++=+..||.-. ..-..
T Consensus 3 r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD-----------~iELGvPfSDPvADGP~Iq-~A~~r 70 (265)
T COG0159 3 RLDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGAD-----------ILELGVPFSDPVADGPTIQ-AAHLR 70 (265)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCC-----------EEEecCCCCCcCccCHHHH-HHHHH
Confidence 35666777765444455677777776 45677777777764 3578998888899999543 34466
Q ss_pred HHHcCCcEEEecCHHHHHHHHhHCCCCeEEE
Q 015304 117 AANVGVNLTTFDSVEELHKIRKWHPKCDLLI 147 (409)
Q Consensus 117 a~~~gv~~~~vds~~el~~i~~~~~~~~v~l 147 (409)
|++.|++ .-+.++-++.+.+..++..+.|
T Consensus 71 AL~~g~t--~~~~lel~~~~r~~~~~~Pivl 99 (265)
T COG0159 71 ALAAGVT--LEDTLELVEEIRAKGVKVPIVL 99 (265)
T ss_pred HHHCCCC--HHHHHHHHHHHHhcCCCCCEEE
Confidence 7899986 3577777777776666555444
No 206
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=37.52 E-value=2.6e+02 Score=23.91 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=16.3
Q ss_pred cCHHHHHHHHhHC-CCCeEEEEEec
Q 015304 128 DSVEELHKIRKWH-PKCDLLIRIKP 151 (409)
Q Consensus 128 ds~~el~~i~~~~-~~~~v~lRv~~ 151 (409)
=|.+|++.+.++. ...++-+|.-|
T Consensus 122 l~~~e~~~lk~l~~~Gv~v~~q~vP 146 (157)
T PRK11425 122 VDAGDIAAFNDLKAAGVECFVQGVP 146 (157)
T ss_pred eCHHHHHHHHHHHHcCCEEEEEECc
Confidence 3567777777764 35677778776
No 207
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=37.39 E-value=2.8e+02 Score=24.22 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCcceEEecCcCCc-HHHHHHHHHcCCcEEE----cCH---HH-HHHHHhCCCCCCcEEE--eCCCCCH
Q 015304 43 VTLYNQMISKLPMIHPHYAVKCNPE-PALLEALAALGSNFDC----ASR---SE-IEAVLALGVSPDRIIY--ANPCKPV 111 (409)
Q Consensus 43 ~~n~~~~~~~~~~~~i~yavKan~~-~~vl~~l~~~G~g~~v----aS~---~E-~~~a~~~G~~~~~Ii~--~gp~k~~ 111 (409)
.+.++.+++.+++..+....|.+.. ...++.+.++|+.+-+ ++. .| ++.+++.|. ++++ .+| .++
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~---~~~v~~~~~-~t~ 116 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGK---EVQVDLIGV-EDP 116 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCC---eEEEEEeCC-CCH
Confidence 3456666666666666666675543 3445667777763222 111 22 233444554 2332 455 355
Q ss_pred HHHHHHHHcCCcE
Q 015304 112 SHIKYAANVGVNL 124 (409)
Q Consensus 112 ~~i~~a~~~gv~~ 124 (409)
++...+...|+..
T Consensus 117 ~e~~~~~~~~~d~ 129 (202)
T cd04726 117 EKRAKLLKLGVDI 129 (202)
T ss_pred HHHHHHHHCCCCE
Confidence 5555566666653
No 208
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=37.30 E-value=2.7e+02 Score=23.90 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=40.9
Q ss_pred cCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCc--EEEe-----------------cCHHHHHHHH
Q 015304 77 LGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVN--LTTF-----------------DSVEELHKIR 137 (409)
Q Consensus 77 ~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~v-----------------ds~~el~~i~ 137 (409)
.|+.+.+.|.+|+...++...+..++++.- ++++++..+++.|+. .+++ =|.+|++.+.
T Consensus 57 ~gvk~~i~sv~~a~~~l~~~~~~~~vlvl~--~~~~da~~l~~~g~~i~~iNiG~m~~~~g~~~i~~~v~l~~ed~~~l~ 134 (158)
T PRK09756 57 YGFGIRFFTIEKTINVIGKAAPHQKIFLIC--RTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLADLR 134 (158)
T ss_pred CCCEEEEEEHHHHHHHHHhccCCceEEEEE--CCHHHHHHHHHcCCCCCEEEECCCcCCCCCEEEecceeeCHHHHHHHH
Confidence 345566666666655554333334444332 345555555555442 2333 3577788877
Q ss_pred hHC-CCCeEEEEEecC
Q 015304 138 KWH-PKCDLLIRIKPP 152 (409)
Q Consensus 138 ~~~-~~~~v~lRv~~~ 152 (409)
++. ...++-+|.-|.
T Consensus 135 ~l~~~Gv~v~~q~vP~ 150 (158)
T PRK09756 135 FIKQRGVNVFIQDVPG 150 (158)
T ss_pred HHHHcCCEEEEEECcC
Confidence 764 356788888773
No 209
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=37.22 E-value=2.1e+02 Score=27.12 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCC--cEEEecCHHHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHH-HHcC
Q 015304 111 VSHIKYAANVGV--NLTTFDSVEELHKIRKWHP--KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAA-EASG 185 (409)
Q Consensus 111 ~~~i~~a~~~gv--~~~~vds~~el~~i~~~~~--~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~-~~~~ 185 (409)
.+.++.|.++|. ..+|+.|+|.++.+.+.+. +.++.|.++++- -+|.-- .+.+...+..+ +..+
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~---------~~y~gg--~~~~~~~v~~~a~~~~ 75 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGA---------AKYAGG--ADSLAHMVKALAEKYG 75 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccH---------HHHhch--HHHHHHHHHHHHHHCC
Confidence 567788887765 3589999999999987653 567888887631 122110 12233333332 3445
Q ss_pred CeEEEEEEeeCCCC-----------------CCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 015304 186 LSVVGVAFHIGSAA-----------------TKFAAYRGAIAAAKAVFETAARLGNNKMR 228 (409)
Q Consensus 186 l~l~Glh~H~gs~~-----------------~~~~~~~~~i~~~~~~~~~~~~~g~~~~~ 228 (409)
+.+. ||.--|... -+...|.+.++..+++++.+...|. .++
T Consensus 76 vPV~-lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gv-sVE 133 (286)
T COG0191 76 VPVA-LHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGV-SVE 133 (286)
T ss_pred CCEE-EECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCC-cEE
Confidence 4443 333333110 1123466677888889999988887 654
No 210
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.58 E-value=69 Score=30.39 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=46.4
Q ss_pred CcceEEecCcCCc-HHHHHHHHHcCC------cEE------------EcCHHHHHHHHhCCCC-CCcEEEeCCCCCHHHH
Q 015304 55 MIHPHYAVKCNPE-PALLEALAALGS------NFD------------CASRSEIEAVLALGVS-PDRIIYANPCKPVSHI 114 (409)
Q Consensus 55 ~~~i~yavKan~~-~~vl~~l~~~G~------g~~------------vaS~~E~~~a~~~G~~-~~~Ii~~gp~k~~~~i 114 (409)
++++.--=|+.|- ..+.+.....|- |.. +.|..++....+...+ ..+|..-- .+.++.
T Consensus 130 ~~~i~~TRKT~PG~R~l~k~AV~~GGG~~HR~gL~d~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv--~tleea 207 (281)
T PRK06106 130 KAKVVCTRKTTPGLRALEKYAVRAGGGMNHRFGLDDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEV--DTLDQL 207 (281)
T ss_pred CeEEEEeCCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEe--CCHHHH
Confidence 4666666677763 344444444431 111 2355555444443333 13344322 366788
Q ss_pred HHHHHcCCcEEEecCH--HHHHHHHhHC
Q 015304 115 KYAANVGVNLTTFDSV--EELHKIRKWH 140 (409)
Q Consensus 115 ~~a~~~gv~~~~vds~--~el~~i~~~~ 140 (409)
..|++.|+..+.+|+. +++....+..
T Consensus 208 ~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 208 EEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 8888888877778876 6777666544
No 211
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=36.39 E-value=74 Score=30.01 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=17.8
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
-+||-|++|++.|+++|. + |+..-+ .++++++.|++
T Consensus 192 EVEvesle~~~eAl~aga--D-iImLDN-m~~e~~~~av~ 227 (280)
T COG0157 192 EVEVESLEEAEEALEAGA--D-IIMLDN-MSPEELKEAVK 227 (280)
T ss_pred EEEcCCHHHHHHHHHcCC--C-EEEecC-CCHHHHHHHHH
Confidence 455566666666666653 2 222222 24555555544
No 212
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=36.36 E-value=3.1e+02 Score=26.87 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=30.6
Q ss_pred eHHHHHHHHHHHHHhCCCcceEEecCcC---CcHHHHHHHHHcCC-cEEEcCH
Q 015304 38 DLGVVVTLYNQMISKLPMIHPHYAVKCN---PEPALLEALAALGS-NFDCASR 86 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i~yavKan---~~~~vl~~l~~~G~-g~~vaS~ 86 (409)
|.+.+.++++.+++.++ +-+ .+|-. -....++.+.+.|+ +++|+..
T Consensus 170 ~f~~~le~i~~i~~~~~-vPV--ivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~ 219 (352)
T PRK05437 170 DFRGWLDNIAEIVSALP-VPV--IVKEVGFGISKETAKRLADAGVKAIDVAGA 219 (352)
T ss_pred cHHHHHHHHHHHHHhhC-CCE--EEEeCCCCCcHHHHHHHHHcCCCEEEECCC
Confidence 44556678888887653 212 25644 46788899999998 7777553
No 213
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=36.31 E-value=3.3e+02 Score=24.62 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCC-cEEEcCH-----------HHHHHHHhCCCCCCcEEEeCCCCCHHHHHH-HHHcCCcEEEec
Q 015304 68 PALLEALAALGS-NFDCASR-----------SEIEAVLALGVSPDRIIYANPCKPVSHIKY-AANVGVNLTTFD 128 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~-a~~~gv~~~~vd 128 (409)
..+++.+.+.|+ .+.+.+. ..++.+++. .+ -+++..|...+.++++. +.+.|+.-+.+.
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~-~~-ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDA-VS-IPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhh-CC-CCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 567788888887 5666552 223333332 22 46888888888888888 556677644444
No 214
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=35.59 E-value=3.1e+02 Score=24.14 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=45.8
Q ss_pred cHHHHHHHHHc--CC--cEE--EcCHH--HHHHHHhCCCCCCcEEEeCCCC---CHHHHHHHHHcCCcEE-EecC----H
Q 015304 67 EPALLEALAAL--GS--NFD--CASRS--EIEAVLALGVSPDRIIYANPCK---PVSHIKYAANVGVNLT-TFDS----V 130 (409)
Q Consensus 67 ~~~vl~~l~~~--G~--g~~--vaS~~--E~~~a~~~G~~~~~Ii~~gp~k---~~~~i~~a~~~gv~~~-~vds----~ 130 (409)
.+.+++.+++. +. .+| +..++ +++.+.++|. +-|++.+-.. ..+.++.+.++|+..+ .+-+ .
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga--d~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~ 116 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA--DIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKV 116 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC--CEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChH
Confidence 36778888775 32 333 45655 7888999996 4565554422 1355677778898632 2213 3
Q ss_pred HHHHHHHhHCCCCeEEEEEec
Q 015304 131 EELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 131 ~el~~i~~~~~~~~v~lRv~~ 151 (409)
+++..+.+.. .+ .+.++|
T Consensus 117 ~~~~~~~~~g--~d-~v~~~p 134 (206)
T TIGR03128 117 KRAKELKELG--AD-YIGVHT 134 (206)
T ss_pred HHHHHHHHcC--CC-EEEEcC
Confidence 5555554443 33 345555
No 215
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=35.51 E-value=4.5e+02 Score=26.13 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=30.6
Q ss_pred CCCcceEEecCcCCcHHHHHHHHHcCCc-EEEcCHHHHHHHHhCC
Q 015304 53 LPMIHPHYAVKCNPEPALLEALAALGSN-FDCASRSEIEAVLALG 96 (409)
Q Consensus 53 ~~~~~i~yavKan~~~~vl~~l~~~G~g-~~vaS~~E~~~a~~~G 96 (409)
++.-++.|+- .++...-++.+.+.|+. +-+-|..|++.+.+..
T Consensus 78 ~~~~~Iif~g-p~K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~~~ 121 (394)
T cd06831 78 VSPENIIYTN-PCKQASQIKYAAKVGVNIMTCDNEIELKKIARNH 121 (394)
T ss_pred CCcCCEEEeC-CCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHhC
Confidence 4555666652 12245567778889994 8999999999988764
No 216
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=35.18 E-value=3.6e+02 Score=24.74 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHcCCc--EEEecCHHHHHHHHhH
Q 015304 109 KPVSHIKYAANVGVN--LTTFDSVEELHKIRKW 139 (409)
Q Consensus 109 k~~~~i~~a~~~gv~--~~~vds~~el~~i~~~ 139 (409)
.+++.++.+-+.|.. ..+|++.++++++.+.
T Consensus 197 ~~~~~v~~~~~~g~~v~~WTvn~~~~~~~l~~~ 229 (249)
T PRK09454 197 LDEARVAALKAAGLRILVYTVNDPARARELLRW 229 (249)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc
Confidence 455666666666654 2366666666666554
No 217
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=35.11 E-value=3.8e+02 Score=25.06 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=13.7
Q ss_pred cEEEeCCCCCHHHHHHHHHcCCc
Q 015304 101 RIIYANPCKPVSHIKYAANVGVN 123 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~gv~ 123 (409)
.|+-+|...+.+++..+++.|+.
T Consensus 245 piia~GGI~~~~da~~~l~~GAd 267 (289)
T cd02810 245 PIIGVGGIDSGEDVLEMLMAGAS 267 (289)
T ss_pred CEEEECCCCCHHHHHHHHHcCcc
Confidence 45556666666666666665554
No 218
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=34.97 E-value=2.8e+02 Score=23.51 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHHHHHcCCcEEEcCHHHHHHHHhCC-CCCCcEEEeCCCCCHHHHHHHHHcCCc--EEEec-----------------C
Q 015304 70 LLEALAALGSNFDCASRSEIEAVLALG-VSPDRIIYANPCKPVSHIKYAANVGVN--LTTFD-----------------S 129 (409)
Q Consensus 70 vl~~l~~~G~g~~vaS~~E~~~a~~~G-~~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~vd-----------------s 129 (409)
+++.....|+.+.+.|.+|+...++.+ .+..++++.- |+++++..+++.|+. .+++. |
T Consensus 44 ~l~ma~P~gvk~~i~sve~a~~~l~~~~~~~~~v~il~--k~~~~~~~l~~~g~~i~~vnvG~~~~~~~~~~v~~~v~l~ 121 (151)
T cd00001 44 LLKLAAPPGVKLRIFTVEKAIEAINSPKYDKQRVFLLF--KNPQDVLRLVEGGVPIKTINVGNMAFRPGKVQITKAVSLD 121 (151)
T ss_pred HHHhhCCCCCeEEEEEHHHHHHHHhCcCCCCceEEEEE--CCHHHHHHHHHcCCCCCEEEECCCcCCCCCEEEecceecC
Confidence 333333456677777777777666543 3334454433 456666666665552 23443 4
Q ss_pred HHHHHHHHhHC-CCCeEEEEEecC
Q 015304 130 VEELHKIRKWH-PKCDLLIRIKPP 152 (409)
Q Consensus 130 ~~el~~i~~~~-~~~~v~lRv~~~ 152 (409)
.+|++.+.++. ...++.+|.-|.
T Consensus 122 ~~e~~~lk~l~~~Gv~v~~q~vP~ 145 (151)
T cd00001 122 EEDVAAFKELAQKGVKVEIQMVPN 145 (151)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcC
Confidence 77888887764 356788888763
No 219
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=34.18 E-value=99 Score=28.76 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEE-EeCCCCCHHHHHHHHH
Q 015304 41 VVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRII-YANPCKPVSHIKYAAN 119 (409)
Q Consensus 41 ~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii-~~gp~k~~~~i~~a~~ 119 (409)
.+-+.+.+.....+++++..++-.++... +...+.|+ ....+..|+ ++ + ++-++ ++.|....+.++.|++
T Consensus 12 ~mG~~i~~~l~~~~~~elvav~d~~~~~~--~~~~~~~i-~~~~dl~~l---l~-~--~DvVid~t~p~~~~~~~~~al~ 82 (257)
T PRK00048 12 RMGRELIEAVEAAEDLELVAAVDRPGSPL--VGQGALGV-AITDDLEAV---LA-D--ADVLIDFTTPEATLENLEFALE 82 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEecCCccc--cccCCCCc-cccCCHHHh---cc-C--CCEEEECCCHHHHHHHHHHHHH
Confidence 34444433333346677777666554321 11111222 123455554 32 3 34455 7777666677888999
Q ss_pred cCCcEEEec---CHHHHHHHHhHCCCCeEEE
Q 015304 120 VGVNLTTFD---SVEELHKIRKWHPKCDLLI 147 (409)
Q Consensus 120 ~gv~~~~vd---s~~el~~i~~~~~~~~v~l 147 (409)
+|+.++.-- |.++++.|.+.+.+..+.+
T Consensus 83 ~G~~vvigttG~s~~~~~~l~~aa~~~~v~~ 113 (257)
T PRK00048 83 HGKPLVIGTTGFTEEQLAELEEAAKKIPVVI 113 (257)
T ss_pred cCCCEEEECCCCCHHHHHHHHHHhcCCCEEE
Confidence 999844222 5889999988655544444
No 220
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=34.17 E-value=2.8e+02 Score=25.86 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=43.4
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCH--------HHHHHHHHcCCcEE---EecCHHHH
Q 015304 67 EPALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYANPCKPV--------SHIKYAANVGVNLT---TFDSVEEL 133 (409)
Q Consensus 67 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~--------~~i~~a~~~gv~~~---~vds~~el 133 (409)
...++....++|. =.||.+.+|++.|+++|. .-|=+++-.... +.|...+..++.++ -+.+.+++
T Consensus 145 l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga--~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv 222 (254)
T COG0134 145 LEELVDRAHELGMEVLVEVHNEEELERALKLGA--KIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDV 222 (254)
T ss_pred HHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCC--CEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Confidence 4667777777886 689999999999999873 333344432111 11111233344322 23568888
Q ss_pred HHHHhHC
Q 015304 134 HKIRKWH 140 (409)
Q Consensus 134 ~~i~~~~ 140 (409)
.++.+..
T Consensus 223 ~~l~~~g 229 (254)
T COG0134 223 RRLAKAG 229 (254)
T ss_pred HHHHHcC
Confidence 8887763
No 221
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=33.92 E-value=4.6e+02 Score=25.61 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeCCCCCCH-HHH-----HHHHHHHHHHHHHHHHcCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIGSAATKF-AAY-----RGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~-~~~-----~~~i~~~~~~~~~~~~~g~ 224 (409)
+.+.++++.++..|+.+. |-...||-..+. +.| ...++.+..-.+.++++++
T Consensus 110 ~~v~~vVe~Ak~~g~piR-IGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f 167 (361)
T COG0821 110 DRVREVVEAAKDKGIPIR-IGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGF 167 (361)
T ss_pred HHHHHHHHHHHHcCCCEE-EecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCC
Confidence 456677777776664332 333444422111 122 1223333444456666766
No 222
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.80 E-value=2.2e+02 Score=25.98 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=66.3
Q ss_pred EeHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHH----Hc--CC--cEE-EcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 37 LDLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALA----AL--GS--NFD-CASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~----~~--G~--g~~-vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.|.+....-.+.+.+. ++-+++.+- +-...+.++.|. +. ++ |+. |-|.++++.+.++|. +.++ .
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~--tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA---~FiV-s 97 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNR--GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGA---NFIV-T 97 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC--CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCC---CEEE-C
Confidence 4555555555555542 334555542 222334444443 21 12 433 778899999999995 4554 5
Q ss_pred CCCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhHCCCCeEEEEEec
Q 015304 107 PCKPVSHIKYAANVGVNL-TTFDSVEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~-~~vds~~el~~i~~~~~~~~v~lRv~~ 151 (409)
|+.+++-++.+.++|+.. .=+-+..|+....+..-+ .+++-|
T Consensus 98 P~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~---~vKlFP 140 (222)
T PRK07114 98 PLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCE---IVKLFP 140 (222)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCC---EEEECc
Confidence 667889999999999863 367888888887766432 367766
No 223
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=33.78 E-value=4.1e+02 Score=24.95 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHH-cCCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEA-SGLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~l~Glh~H~gs 197 (409)
|+++.++++.+++ .++ ..|+|+|-..
T Consensus 177 P~~v~~lv~~l~~~~~~-~l~~H~Hnd~ 203 (275)
T cd07937 177 PYAAYELVKALKKEVGL-PIHLHTHDTS 203 (275)
T ss_pred HHHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 7889999998866 354 4578888643
No 224
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=33.73 E-value=5.7e+02 Score=26.66 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCC-cEEE----cCHHHHHHHHh---CCCCCCcEE
Q 015304 68 PALLEALAALGS-NFDC----ASRSEIEAVLA---LGVSPDRII 103 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~v----aS~~E~~~a~~---~G~~~~~Ii 103 (409)
..|++.|.+.|+ .+|+ +|+.|.+..++ .+.+..+|.
T Consensus 26 l~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~ 69 (526)
T TIGR00977 26 IRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIV 69 (526)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEE
Confidence 578888889998 6766 47777766553 344333444
No 225
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=33.69 E-value=3.1e+02 Score=24.85 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCcceEEecCcCCcHHHHHHHHHc-C-C--cEE-EcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcE-EEe
Q 015304 54 PMIHPHYAVKCNPEPALLEALAAL-G-S--NFD-CASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL-TTF 127 (409)
Q Consensus 54 ~~~~i~yavKan~~~~vl~~l~~~-G-~--g~~-vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~-~~v 127 (409)
+-+++.|-.. .--+.++.+.+. + + |+. |-+...++.+.++| .+.++ +|+.+++-++.|.++|+.+ .=+
T Consensus 40 ~~IEITl~sp--~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG---a~fiV-sP~~~~ev~~~a~~~~ip~~PG~ 113 (211)
T COG0800 40 PAIEITLRTP--AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG---AQFIV-SPGLNPEVAKAANRYGIPYIPGV 113 (211)
T ss_pred CeEEEecCCC--CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC---CCEEE-CCCCCHHHHHHHHhCCCcccCCC
Confidence 3456655432 233455555542 2 2 443 66788888888998 45665 4557888899999999863 477
Q ss_pred cCHHHHHHHHhHCCCCeEEEEEec
Q 015304 128 DSVEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 128 ds~~el~~i~~~~~~~~v~lRv~~ 151 (409)
-+..|+....+..-. .+++-|
T Consensus 114 ~TptEi~~Ale~G~~---~lK~FP 134 (211)
T COG0800 114 ATPTEIMAALELGAS---ALKFFP 134 (211)
T ss_pred CCHHHHHHHHHcChh---heeecC
Confidence 888888887776432 345554
No 226
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.62 E-value=3.7e+02 Score=24.45 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=50.8
Q ss_pred CcEEEeCCCCCHHHHHHHHHcCCcEEEe-----cCHHHHHHHHhHCCCCeEEEEEecCCCC--CCCCCCCCCcCCCCCcc
Q 015304 100 DRIIYANPCKPVSHIKYAANVGVNLTTF-----DSVEELHKIRKWHPKCDLLIRIKPPDDS--GAKHPLDSKYGVDHHPQ 172 (409)
Q Consensus 100 ~~Ii~~gp~k~~~~i~~a~~~gv~~~~v-----ds~~el~~i~~~~~~~~v~lRv~~~~~~--~~~~~~~srfGi~~~~~ 172 (409)
-+++..|...+.++++.+++.|+..+.+ .+.+.+..+.+..+..++.+-++..... +.++. .|-|......
T Consensus 72 ~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~--~~~~~~~~~~ 149 (243)
T cd04731 72 IPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVY--THGGRKPTGL 149 (243)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEE--EcCCceecCC
Confidence 3689999999999999999888754444 4456677776655444455555431100 00000 1112210134
Q ss_pred cHHHHHHHHHHcCCeEEEEE
Q 015304 173 EIVPLLEAAEASGLSVVGVA 192 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh 192 (409)
+..++++.+...++...-+|
T Consensus 150 ~~~~~~~~l~~~G~d~i~v~ 169 (243)
T cd04731 150 DAVEWAKEVEELGAGEILLT 169 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEe
Confidence 45666677766676654443
No 227
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=33.57 E-value=2.6e+02 Score=25.10 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHH-cCC--cEEEcCHHHHHHHHhCCCCCCcEEEeC----------CCCCHHHHHHHHHc-CCcEEE---e
Q 015304 65 NPEPALLEALAA-LGS--NFDCASRSEIEAVLALGVSPDRIIYAN----------PCKPVSHIKYAANV-GVNLTT---F 127 (409)
Q Consensus 65 n~~~~vl~~l~~-~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~g----------p~k~~~~i~~a~~~-gv~~~~---v 127 (409)
+....+++.+++ .|. ..+|.|..|+..+.++|++ -|..+. .....+.++...+. ++.++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d--~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI 182 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFD--FIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRI 182 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCC--EEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCC
Confidence 345678888888 776 6788999999999999973 232211 01112344444332 444333 4
Q ss_pred cCHHHHHHHHhH
Q 015304 128 DSVEELHKIRKW 139 (409)
Q Consensus 128 ds~~el~~i~~~ 139 (409)
.+.++++.+.+.
T Consensus 183 ~t~~~~~~~l~~ 194 (221)
T PRK01130 183 NTPEQAKKALEL 194 (221)
T ss_pred CCHHHHHHHHHC
Confidence 566777777654
No 228
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=33.51 E-value=3e+02 Score=23.37 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCcEEEcCHHHHHHHHhCC-CCCCcEEEeCCCCCHHHHHHHHHcCCc--EEEec-----------------
Q 015304 69 ALLEALAALGSNFDCASRSEIEAVLALG-VSPDRIIYANPCKPVSHIKYAANVGVN--LTTFD----------------- 128 (409)
Q Consensus 69 ~vl~~l~~~G~g~~vaS~~E~~~a~~~G-~~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~vd----------------- 128 (409)
.+++.....|+.+.+-|.+|+...++.+ .+..++++.- ++++++..+++.|+. .+++.
T Consensus 44 ~~lkma~P~gvk~~i~sve~a~~~l~~~~~~~~~v~vl~--k~~~da~~l~~~g~~i~~iniG~~~~~~g~~~v~~~v~l 121 (151)
T TIGR00854 44 TLMGIVAPTGFKVRFVSLEKTINVIHKPAYHDQTIFLLF--RNPQDVLTLVEGGVPIKTVNVGGMHFSNGKKQITKKVSV 121 (151)
T ss_pred HHHHhhCCCCCEEEEEEHHHHHHHHhCcCCCCceEEEEE--CCHHHHHHHHHcCCCCCEEEECCcccCCCCEEEecceee
Confidence 3334333456677777777777666542 3334454433 456666666766553 23432
Q ss_pred CHHHHHHHHhHC-CCCeEEEEEec
Q 015304 129 SVEELHKIRKWH-PKCDLLIRIKP 151 (409)
Q Consensus 129 s~~el~~i~~~~-~~~~v~lRv~~ 151 (409)
|.+|++.+.++. ...++-+|.-|
T Consensus 122 ~~~e~~~l~~l~~~Gv~v~~q~vP 145 (151)
T TIGR00854 122 DDQDITAFRFLKQRGVKLFLRDVP 145 (151)
T ss_pred CHHHHHHHHHHHHcCCEEEEEECc
Confidence 367788887764 35677777776
No 229
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=33.48 E-value=3e+02 Score=23.31 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEcC--H-----------HHHHHHHhCCCCCCcEEEeCC
Q 015304 42 VVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCAS--R-----------SEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 42 l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS--~-----------~E~~~a~~~G~~~~~Ii~~gp 107 (409)
+.+.++.+++.+++..+...+..+...... .+.+.|+ .+.+.. . .+....++.. ..-.|+..|.
T Consensus 101 ~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pi~~~GG 178 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAA-AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG-SKVPVIAGGG 178 (200)
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCccchh-hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc-CCCCEEEECC
Confidence 566677777766555455444433322111 1455665 333211 0 0111111222 2246777777
Q ss_pred CCCHHHHHHHHHcCCcEEEe
Q 015304 108 CKPVSHIKYAANVGVNLTTF 127 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~~~v 127 (409)
..+++.+..+++.|+..+.+
T Consensus 179 i~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 179 INDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCHHHHHHHHHhCCCEEEe
Confidence 77768888888777764444
No 230
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.44 E-value=3.8e+02 Score=24.52 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=25.2
Q ss_pred cEEEeCCCCCHHHHHHHHHcCCcEEEe-----cCHHHHHHHHhHCCCCeEEEEEe
Q 015304 101 RIIYANPCKPVSHIKYAANVGVNLTTF-----DSVEELHKIRKWHPKCDLLIRIK 150 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~gv~~~~v-----ds~~el~~i~~~~~~~~v~lRv~ 150 (409)
++-+.|..++.++++.+++.|+..+++ .+.+.++.+.+.....++.+-++
T Consensus 75 ~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD 129 (232)
T PRK13586 75 WIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSID 129 (232)
T ss_pred CEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEE
Confidence 355555556666666666655543333 33445555554443334444444
No 231
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=33.16 E-value=2.4e+02 Score=28.02 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCc-ceEEecCcCC---cHHHHHHHHHcCC---cEEEcCHH
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPMI-HPHYAVKCNP---EPALLEALAALGS---NFDCASRS 87 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~~-~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~~ 87 (409)
|| |. +++.+.|.+-++.+++.||-. ..-.++=+|| ..+-++.|+++|+ .+.|-|..
T Consensus 82 GT-Ps-~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~ 144 (394)
T PRK08898 82 GT-PS-LLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFN 144 (394)
T ss_pred CC-cC-CCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCC
Confidence 45 55 478889999999999998721 1234455665 5788899999986 44454443
No 232
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=33.14 E-value=2.6e+02 Score=27.49 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCH-HHH----HHHHHHHHHHHHHHH
Q 015304 146 LIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKF-AAY----RGAIAAAKAVFETAA 220 (409)
Q Consensus 146 ~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~-~~~----~~~i~~~~~~~~~~~ 220 (409)
.+||||+.-.. ......|-. .+.+.++++.+++.++.+. +=...||-..+. +.| ...++.+.+.++.++
T Consensus 97 kiRINPGNi~~---~~~~~~g~~--~~~~~~vv~~ake~~ipIR-IGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le 170 (359)
T PF04551_consen 97 KIRINPGNIVD---EFQEELGSI--REKVKEVVEAAKERGIPIR-IGVNSGSLEKDILEKYGPTPEAMVESALEHVRILE 170 (359)
T ss_dssp EEEE-TTTSS-------SS-SS---HHHHHHHHHHHHHHT-EEE-EEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCCcccc---cccccccch--HHHHHHHHHHHHHCCCCEE-EecccccCcHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 58999853100 001112443 5778889999988886543 445666643221 112 123444555667778
Q ss_pred HcCCCCCcEEee
Q 015304 221 RLGNNKMRVLDI 232 (409)
Q Consensus 221 ~~g~~~~~~ldi 232 (409)
++++ .--++++
T Consensus 171 ~~~f-~~iviSl 181 (359)
T PF04551_consen 171 ELGF-DDIVISL 181 (359)
T ss_dssp HCT--GGEEEEE
T ss_pred HCCC-CcEEEEE
Confidence 8887 4445553
No 233
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.06 E-value=73 Score=30.38 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=33.7
Q ss_pred CHHHHHHHHhCCCC-CCcEEEeCCCCCHHHHHHHHHcCCcEEEecC--HHHHHHHHhHCCCCeEEEEEe
Q 015304 85 SRSEIEAVLALGVS-PDRIIYANPCKPVSHIKYAANVGVNLTTFDS--VEELHKIRKWHPKCDLLIRIK 150 (409)
Q Consensus 85 S~~E~~~a~~~G~~-~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds--~~el~~i~~~~~~~~v~lRv~ 150 (409)
+..++....+...+ ..+|..=- .+.++++.|++.|+..+.+|+ .+++.+..+..+. ++.+-..
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv--~tleea~~a~~agaDiImLDnmspe~l~~av~~~~~-~~~leaS 247 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEV--ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIAG-RSRIECS 247 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEEC--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcC-ceEEEEE
Confidence 44444333333233 24455444 456777777777777666764 4566665554332 4555444
No 234
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.75 E-value=1.8e+02 Score=26.39 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=66.0
Q ss_pred EeHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHH-cC----C--cEE-EcCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 37 LDLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAA-LG----S--NFD-CASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~-~G----~--g~~-vaS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
.+.+....-.+.+.+. ++-+++.+- +......++.+.+ .+ + |+. |-+.++++.+.++|. +.++ .|
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~--~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA---~Fiv-sP 95 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT--NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA---QFIV-SP 95 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC--CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC---CEEE-CC
Confidence 4555666666666543 334555543 3334556666654 32 3 443 778899999999995 4554 67
Q ss_pred CCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhHC
Q 015304 108 CKPVSHIKYAANVGVNL-TTFDSVEELHKIRKWH 140 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~-~~vds~~el~~i~~~~ 140 (409)
+.+++-++.+.++|+.. .-+.+.+|+....+..
T Consensus 96 ~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~G 129 (213)
T PRK06552 96 SFNRETAKICNLYQIPYLPGCMTVTEIVTALEAG 129 (213)
T ss_pred CCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcC
Confidence 78999999999999863 3778999998876654
No 235
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=32.75 E-value=4.6e+02 Score=25.65 Aligned_cols=82 Identities=9% Similarity=-0.068 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEcC---------------HHHHHHHH-hCCCCCCcEEEe
Q 015304 43 VTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCAS---------------RSEIEAVL-ALGVSPDRIIYA 105 (409)
Q Consensus 43 ~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS---------------~~E~~~a~-~~G~~~~~Ii~~ 105 (409)
.+.++.+++..+ +-..+|---++..++.+.+.|+ ++.|+. +.|+..+. +.| +.-.|+..
T Consensus 202 ~~~i~~l~~~~~---~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~-~~~~vi~~ 277 (344)
T cd02922 202 WDDIKWLRKHTK---LPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVF-DKIEVYVD 277 (344)
T ss_pred HHHHHHHHHhcC---CcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhC-CCceEEEe
Confidence 344555555442 2234666667777788888887 666654 34444433 223 11357777
Q ss_pred CCCCCHHHHHHHHHcCCcEEEec
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
|...+..++-.|+..|...+.+.
T Consensus 278 GGIr~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 278 GGVRRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEC
Confidence 87788888888888887644333
No 236
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=32.60 E-value=1.1e+02 Score=29.40 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCCCcEEEeCCC--CCHHHHHHHHHcCCcEEEecCH
Q 015304 86 RSEIEAVLALGVSPDRIIYANPC--KPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 86 ~~E~~~a~~~G~~~~~Ii~~gp~--k~~~~i~~a~~~gv~~~~vds~ 130 (409)
.+-++.+.+.|++++++++.+-. .+.+.++.+++.|+. +.+|.+
T Consensus 170 ~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~-l~~D~~ 215 (308)
T PF02126_consen 170 LEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVY-LEFDTI 215 (308)
T ss_dssp HHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-E-EEETTT
T ss_pred HHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCE-EEecCC
Confidence 46677788899999999987542 344577777888885 677754
No 237
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.53 E-value=87 Score=29.72 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=17.5
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
-+||.|++|+..+.++|. +.|.+.+ .++++++.|++
T Consensus 197 eVEv~slee~~ea~~~ga--DiImLDn--~s~e~l~~av~ 232 (281)
T PRK06543 197 EVEVDRLDQIEPVLAAGV--DTIMLDN--FSLDDLREGVE 232 (281)
T ss_pred EEEeCCHHHHHHHHhcCC--CEEEECC--CCHHHHHHHHH
Confidence 355555555555555554 2333333 24555555543
No 238
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.29 E-value=3.9e+02 Score=24.76 Aligned_cols=8 Identities=0% Similarity=0.235 Sum_probs=4.6
Q ss_pred CCcEEeec
Q 015304 226 KMRVLDIG 233 (409)
Q Consensus 226 ~~~~ldiG 233 (409)
.+..+++.
T Consensus 208 ~i~~vHik 215 (283)
T PRK13209 208 HIVAFHVK 215 (283)
T ss_pred cEEEEEec
Confidence 55566663
No 239
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=32.24 E-value=2e+02 Score=24.47 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=40.4
Q ss_pred HHHHHHHcCCcEEEcCHHHHHHHHhCCC-CCCcEEEeCCCCCHHHHHHHHHcCCc--EEEe-----------------cC
Q 015304 70 LLEALAALGSNFDCASRSEIEAVLALGV-SPDRIIYANPCKPVSHIKYAANVGVN--LTTF-----------------DS 129 (409)
Q Consensus 70 vl~~l~~~G~g~~vaS~~E~~~a~~~G~-~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~v-----------------ds 129 (409)
+++.....|+.+.+-|.+|+...++.+- +..++++.- ++++++..+++.|+. .+++ =|
T Consensus 45 ~l~ma~P~gvk~~i~sv~~a~~~l~~~~~~~~~v~ii~--k~~~d~~~l~~~g~~i~~iNvG~~~~~~g~~~i~~~v~l~ 122 (151)
T PF03830_consen 45 ILKMAAPAGVKLSIFSVEEAIEKLKKPEYSKKRVLIIV--KSPEDALRLVEAGVKIKEINVGNMSKKPGRKKITKNVYLS 122 (151)
T ss_dssp HHHHTSHTTSEEEEE-HHHHHHHHCGGGGTTEEEEEEE--SSHHHHHHHHHTT---SEEEEEEB---TTSEEESSSBEE-
T ss_pred HHHHhhcCCCceEEEEHHHHHHHHHhcccCCceEEEEE--CCHHHHHHHHhcCCCCCEEEECCCCCCCccceeCCeEEEC
Confidence 3333334455666666666665555432 334444332 345666666665542 2333 24
Q ss_pred HHHHHHHHhHC-CCCeEEEEEec
Q 015304 130 VEELHKIRKWH-PKCDLLIRIKP 151 (409)
Q Consensus 130 ~~el~~i~~~~-~~~~v~lRv~~ 151 (409)
.+|++.+.++. ...++-+|.-|
T Consensus 123 ~ee~~~l~~l~~~Gv~i~~q~vP 145 (151)
T PF03830_consen 123 EEEIEALKELADKGVEIEFQMVP 145 (151)
T ss_dssp HHHHHHHHHHHHTT-EEEE-SST
T ss_pred HHHHHHHHHHHHCCCEEEEEECc
Confidence 77888887764 35667777766
No 240
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=31.87 E-value=3.7e+02 Score=26.65 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=55.4
Q ss_pred EEeHHHHHHHHHHHHHhCCCcceEEecCcCCcH-HHHHHHHHcCCcEEEcCHH------------------------HHH
Q 015304 36 ILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEP-ALLEALAALGSNFDCASRS------------------------EIE 90 (409)
Q Consensus 36 v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~-~vl~~l~~~G~g~~vaS~~------------------------E~~ 90 (409)
+++.+.|.+.++++|+.-|+..+..-+=+.... .+...+.+.|+.|-+-+-. |+.
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~ 263 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAH 263 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHH
Confidence 799999999999999988765554322233333 3444466777644332222 233
Q ss_pred H-HHhCCCCCC-cEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 91 A-VLALGVSPD-RIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 91 ~-a~~~G~~~~-~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
. +.+.|.... .++.+|...+..++-.|+..|...+.+...
T Consensus 264 ~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~ 305 (368)
T PF01645_consen 264 QALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA 305 (368)
T ss_dssp HHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred HHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
Confidence 2 234565422 578889999999999999999986666544
No 241
>PRK08508 biotin synthase; Provisional
Probab=31.84 E-value=4.4e+02 Score=24.76 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=13.8
Q ss_pred HHHHHHHcCCcE-----E-EecCHHHHHHHH
Q 015304 113 HIKYAANVGVNL-----T-TFDSVEELHKIR 137 (409)
Q Consensus 113 ~i~~a~~~gv~~-----~-~vds~~el~~i~ 137 (409)
.++.|.+.|+.+ + .-++.+++....
T Consensus 142 ~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l 172 (279)
T PRK08508 142 TCENAKEAGLGLCSGGIFGLGESWEDRISFL 172 (279)
T ss_pred HHHHHHHcCCeecceeEEecCCCHHHHHHHH
Confidence 344566777642 1 346777666544
No 242
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.84 E-value=3.8e+02 Score=25.58 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=29.3
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
+-+||.|.+|+..+.++|. +.|.+.+ .++++++++++
T Consensus 202 IeVEv~tl~ea~eal~~ga--DiI~LDn--m~~e~vk~av~ 238 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAEGA--ELVLLDN--FPVWQTQEAVQ 238 (289)
T ss_pred EEEEcCCHHHHHHHHHcCC--CEEEeCC--CCHHHHHHHHH
Confidence 4788999999999999986 4566654 46899999874
No 243
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.75 E-value=2.9e+02 Score=26.47 Aligned_cols=81 Identities=10% Similarity=0.058 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCcceEEecCcCC------------cHHHHHHHHHcCC-cEEEcCH--------------------HH
Q 015304 42 VVTLYNQMISKLPMIHPHYAVKCNP------------EPALLEALAALGS-NFDCASR--------------------SE 88 (409)
Q Consensus 42 l~~n~~~~~~~~~~~~i~yavKan~------------~~~vl~~l~~~G~-g~~vaS~--------------------~E 88 (409)
+.+-++++++.++. .+--.+|.++ ...+++.|.+.|+ .+++++. .-
T Consensus 194 ~~eii~avr~~~g~-d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~ 272 (327)
T cd02803 194 LLEIVAAVREAVGP-DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLEL 272 (327)
T ss_pred HHHHHHHHHHHcCC-CceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHH
Confidence 45667777777742 2233455553 2467888888888 6665431 11
Q ss_pred HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHc-CCcEE
Q 015304 89 IEAVLALGVSPDRIIYANPCKPVSHIKYAANV-GVNLT 125 (409)
Q Consensus 89 ~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~-gv~~~ 125 (409)
+..+++. ++ -.|+.+|...+.++++.+++. ++..+
T Consensus 273 ~~~ir~~-~~-iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 273 AEKIKKA-VK-IPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred HHHHHHH-CC-CCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 2223332 22 346666666667777777765 34433
No 244
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.70 E-value=3.9e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHc-CCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEAS-GLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~-~l~l~Glh~H~gs 197 (409)
|+++.++++.+++. +-...|+|+|-.-
T Consensus 165 P~~v~~lv~~~~~~~~~~~l~~H~Hnd~ 192 (237)
T PF00682_consen 165 PEDVAELVRALREALPDIPLGFHAHNDL 192 (237)
T ss_dssp HHHHHHHHHHHHHHSTTSEEEEEEBBTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCc
Confidence 78888888888653 3256678888743
No 245
>PRK08227 autoinducer 2 aldolase; Validated
Probab=31.43 E-value=4.5e+02 Score=24.72 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEE
Q 015304 113 HIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVA 192 (409)
Q Consensus 113 ~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh 192 (409)
.+....+ ++.. .+-+.--++......+...+.+|++.+. ...-+...+.+..-++.+-+.|-.-+++|
T Consensus 47 ~~~~i~~-~~da-~~~~~G~~~~~~~~~~~~~lil~ls~~t----------~~~~~~~~~~l~~sVeeAvrlGAdAV~~~ 114 (264)
T PRK08227 47 NIAPLFP-YADV-LMCTRGILRSVVPPATNKPVVLRASGGN----------SILKELSNEAVAVDMEDAVRLNACAVAAQ 114 (264)
T ss_pred HHHHHhh-cCCE-EEeChhHHHhcccccCCCcEEEEEcCCC----------CCCCCCCcccceecHHHHHHCCCCEEEEE
Confidence 4555555 6763 3455666666444445667899998521 11100001111111222334577788888
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Q 015304 193 FHIGSAATKFAAYRGAIAAAKAVFETAARLGNN 225 (409)
Q Consensus 193 ~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~ 225 (409)
..+||.. + .++++.+.++.+.++++|+|
T Consensus 115 v~~Gs~~---E--~~~l~~l~~v~~ea~~~G~P 142 (264)
T PRK08227 115 VFIGSEY---E--HQSIKNIIQLVDAGLRYGMP 142 (264)
T ss_pred EecCCHH---H--HHHHHHHHHHHHHHHHhCCc
Confidence 8898632 2 35677788888899999984
No 246
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=31.39 E-value=2.3e+02 Score=28.46 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCC----HHHHHHHHHHHHHhhCCCCCCCCCCcEE
Q 015304 198 AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKS----FQEAASIIKEALHAYFPNELLPGSSLRV 273 (409)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~----~~~~~~~i~~~l~~~~~~~~~~~~~~~l 273 (409)
...|++.+..+++++++.++..+++|- .. ++==||-=|..|.-..+ ++.+++.++. +.+|.++-|+ +.++
T Consensus 153 TnPd~~Vra~A~~qvk~alD~~~eLGg-en-yV~WgGREGye~~lntD~~~e~d~~~~~l~~-~~dYa~~iGf---~~~f 226 (434)
T TIGR02630 153 TSPDADVFAYAAAQVKKALEVTKKLGG-EN-YVFWGGREGYETLLNTDMKRELDHLARFLHM-AVDYAKKIGF---KGQF 226 (434)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCC-Ce-EEECCCccccccccccCHHHHHHHHHHHHHH-HHHHhhhcCC---CceE
Confidence 345778888899999999999999985 32 33335532332222223 3445555544 3345433211 1267
Q ss_pred EEcCC
Q 015304 274 ISEPG 278 (409)
Q Consensus 274 ~~EpG 278 (409)
.+||=
T Consensus 227 ~IEPK 231 (434)
T TIGR02630 227 LIEPK 231 (434)
T ss_pred EeccC
Confidence 77763
No 247
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=31.32 E-value=2.1e+02 Score=28.20 Aligned_cols=87 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCC-cHHHHHHHHHcCC---cEEEcCHHH-----------------
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNP-EPALLEALAALGS---NFDCASRSE----------------- 88 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~-~~~vl~~l~~~G~---g~~vaS~~E----------------- 88 (409)
|| | -+++.+.|.+-++.+++. +..++..-+-.+. +...++.+++.|+ .+.|-|..+
T Consensus 67 GT-P-s~l~~~~l~~ll~~i~~~-~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ 143 (370)
T PRK06294 67 GT-P-SLVPPALIQDILKTLEAP-HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAID 143 (370)
T ss_pred Cc-c-ccCCHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHH
Q ss_pred -HHHHHhCCCC--CCcEEEeCCCCCHHHHHHHHH
Q 015304 89 -IEAVLALGVS--PDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 89 -~~~a~~~G~~--~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
++.++++|++ .-++++.-|.-+.++++.-++
T Consensus 144 ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~ 177 (370)
T PRK06294 144 AVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLH 177 (370)
T ss_pred HHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHH
No 248
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=31.21 E-value=4.4e+02 Score=24.53 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=7.0
Q ss_pred ccHHHHHHHHHH
Q 015304 172 QEIVPLLEAAEA 183 (409)
Q Consensus 172 ~~~~~~~~~~~~ 183 (409)
++..+.++.+++
T Consensus 184 ~~~~~~i~~lr~ 195 (256)
T TIGR00262 184 SALNELVKRLKA 195 (256)
T ss_pred hhHHHHHHHHHh
Confidence 335666666655
No 249
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.12 E-value=4.1e+02 Score=25.30 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=28.4
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
++++|.|.+|+..++++|. +++..++ .++++++.+++
T Consensus 199 I~VEv~tleea~eA~~~Ga---D~I~LDn-~~~e~l~~av~ 235 (288)
T PRK07428 199 IEVETETLEQVQEALEYGA---DIIMLDN-MPVDLMQQAVQ 235 (288)
T ss_pred EEEECCCHHHHHHHHHcCC---CEEEECC-CCHHHHHHHHH
Confidence 4888999999999998885 3555555 47788888875
No 250
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.08 E-value=87 Score=29.92 Aligned_cols=40 Identities=8% Similarity=0.225 Sum_probs=19.6
Q ss_pred CHHHHHHHHHcCCcEEEecC--HHHHHHHHhHCCCCeEEEEEe
Q 015304 110 PVSHIKYAANVGVNLTTFDS--VEELHKIRKWHPKCDLLIRIK 150 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~~vds--~~el~~i~~~~~~~~v~lRv~ 150 (409)
+.++++.|++.|+..+.+|+ .+++.+..+..+. ++.+-.+
T Consensus 214 tleea~eA~~aGaDiImLDnmspe~l~~av~~~~~-~~~lEaS 255 (294)
T PRK06978 214 TLAQLETALAHGAQSVLLDNFTLDMMREAVRVTAG-RAVLEVS 255 (294)
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhcC-CeEEEEE
Confidence 45566666666665555554 3444444333222 3444443
No 251
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=30.66 E-value=4e+02 Score=23.93 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCc-EEEcCH-----------HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEe
Q 015304 68 PALLEALAALGSN-FDCASR-----------SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF 127 (409)
Q Consensus 68 ~~vl~~l~~~G~g-~~vaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~v 127 (409)
..+++.+.+.|+. +-+... .-+..+.+. .+ -+++..|...+.++++.+.+.|+.-+.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-~~-ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKA-VN-VPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CC-CCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4566667777763 333222 223333333 22 3577777777777777777777653443
No 252
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=30.65 E-value=4.1e+02 Score=24.01 Aligned_cols=91 Identities=5% Similarity=-0.073 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCC--cceEEecCcCC---cHHHHHHHHHcCC-cEEEc--------CHHHHHHHHhCCCCCCcEEEe
Q 015304 40 GVVVTLYNQMISKLPM--IHPHYAVKCNP---EPALLEALAALGS-NFDCA--------SRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 40 ~~l~~n~~~~~~~~~~--~~i~yavKan~---~~~vl~~l~~~G~-g~~va--------S~~E~~~a~~~G~~~~~Ii~~ 105 (409)
+.+.+.+.++.+...+ +++.+-.-... ....+++..+.|+ .+..+ |++.++..++.--.+-.|-..
T Consensus 102 ~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 102 EVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 3445566666665543 22222211111 2455666677787 44443 346666555542123578888
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
|..++.++....++.|..++-.++.
T Consensus 182 GGirt~~~a~~~i~aGa~riGts~~ 206 (211)
T TIGR00126 182 GGVRTAEDAIAMIEAGASRIGASAG 206 (211)
T ss_pred CCCCCHHHHHHHHHHhhHHhCcchH
Confidence 8889988888888888765544433
No 253
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=30.52 E-value=2.5e+02 Score=27.13 Aligned_cols=48 Identities=25% Similarity=0.213 Sum_probs=34.9
Q ss_pred eEEecCcCCcHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 58 PHYAVKCNPEPALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 58 i~yavKan~~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
+....=.++...+++.+++.|+ -..|.|..|++.+.++|. +-|+.-|+
T Consensus 116 ~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~--D~iv~qG~ 165 (330)
T PF03060_consen 116 VVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGA--DAIVAQGP 165 (330)
T ss_dssp EEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT---SEEEEE-T
T ss_pred EEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCC--CEEEEecc
Confidence 3333345666889999999997 778999999999999996 45777664
No 254
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=30.44 E-value=4.4e+02 Score=24.31 Aligned_cols=89 Identities=9% Similarity=0.046 Sum_probs=51.7
Q ss_pred CcEEEeCCCCCHHHHHHHHHcCCcEEEe-----cCHHHHHHHHhHCCCCeEEEEEecCCCC-C--CCCCCCCCcCCCCCc
Q 015304 100 DRIIYANPCKPVSHIKYAANVGVNLTTF-----DSVEELHKIRKWHPKCDLLIRIKPPDDS-G--AKHPLDSKYGVDHHP 171 (409)
Q Consensus 100 ~~Ii~~gp~k~~~~i~~a~~~gv~~~~v-----ds~~el~~i~~~~~~~~v~lRv~~~~~~-~--~~~~~~srfGi~~~~ 171 (409)
-++.+.|...+.++++.+++.|+..+.+ .+.+.++.+.+..++.++.+-++..... . .....-.|-|.....
T Consensus 75 ~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~ 154 (254)
T TIGR00735 75 IPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTG 154 (254)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCC
Confidence 3688899999999999999988764444 4556777777666655666666532110 0 000000122222113
Q ss_pred ccHHHHHHHHHHcCCeE
Q 015304 172 QEIVPLLEAAEASGLSV 188 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l 188 (409)
.+..++++.+...++..
T Consensus 155 ~~~~~~~~~l~~~G~~~ 171 (254)
T TIGR00735 155 LDAVEWAKEVEKLGAGE 171 (254)
T ss_pred CCHHHHHHHHHHcCCCE
Confidence 45667777777766553
No 255
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=30.41 E-value=4.4e+02 Score=24.38 Aligned_cols=82 Identities=22% Similarity=0.248 Sum_probs=51.1
Q ss_pred cCCcHHHHHHHHHcCCcEEE----------cCHH-HHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCc---EEEecC
Q 015304 64 CNPEPALLEALAALGSNFDC----------ASRS-EIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVN---LTTFDS 129 (409)
Q Consensus 64 an~~~~vl~~l~~~G~g~~v----------aS~~-E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~---~~~vds 129 (409)
+-++|-.++++...|..+-+ .|+- -++.+...+. ..|+ --|.-.+..|+.+++.|.. +..|+|
T Consensus 24 ~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~--~pvV-R~p~g~~~~Ikq~LD~GAqtlliPmV~s 100 (255)
T COG3836 24 SLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYAS--PPVV-RPPVGDPVMIKQLLDIGAQTLLIPMVDT 100 (255)
T ss_pred cCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhccCC--CCee-eCCCCCHHHHHHHHccccceeeeeccCC
Confidence 44667778888777763332 2222 2333333343 3344 3444577899999998875 358999
Q ss_pred HHHHHHHHhHCCCCeEEEE
Q 015304 130 VEELHKIRKWHPKCDLLIR 148 (409)
Q Consensus 130 ~~el~~i~~~~~~~~v~lR 148 (409)
.||.+.+-+..+-...++|
T Consensus 101 ~eqAr~~V~A~rYPP~G~R 119 (255)
T COG3836 101 AEQARQAVAATRYPPLGER 119 (255)
T ss_pred HHHHHHHHHhccCCCCCcc
Confidence 9999999876543444555
No 256
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=30.36 E-value=1.7e+02 Score=22.90 Aligned_cols=88 Identities=22% Similarity=0.249 Sum_probs=54.5
Q ss_pred HHHHHHhCCCcceEEecCcCCcHHHHHH-HHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCH-HHHHHHHHcCCc
Q 015304 46 YNQMISKLPMIHPHYAVKCNPEPALLEA-LAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPV-SHIKYAANVGVN 123 (409)
Q Consensus 46 ~~~~~~~~~~~~i~yavKan~~~~vl~~-l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~-~~i~~a~~~gv~ 123 (409)
+..+++..++.++... +++++.-.+. ..+.|+. -..|..|+... ..+ +-++...|.... +.+..+++.|..
T Consensus 16 ~~~~~~~~~~~~v~~v--~d~~~~~~~~~~~~~~~~-~~~~~~~ll~~--~~~--D~V~I~tp~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 16 LRALLRSSPDFEVVAV--CDPDPERAEAFAEKYGIP-VYTDLEELLAD--EDV--DAVIIATPPSSHAEIAKKALEAGKH 88 (120)
T ss_dssp HHHHHHTTTTEEEEEE--ECSSHHHHHHHHHHTTSE-EESSHHHHHHH--TTE--SEEEEESSGGGHHHHHHHHHHTTSE
T ss_pred HHHHHhcCCCcEEEEE--EeCCHHHHHHHHHHhccc-chhHHHHHHHh--hcC--CEEEEecCCcchHHHHHHHHHcCCE
Confidence 3456655466766655 3444544444 4456777 77777766532 333 556666664443 566778899996
Q ss_pred EEEe-----cCHHHHHHHHhHCC
Q 015304 124 LTTF-----DSVEELHKIRKWHP 141 (409)
Q Consensus 124 ~~~v-----ds~~el~~i~~~~~ 141 (409)
+.+ .|.+|++++.+.+.
T Consensus 89 -v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 89 -VLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp -EEEESSSSSSHHHHHHHHHHHH
T ss_pred -EEEEcCCcCCHHHHHHHHHHHH
Confidence 444 49999999987654
No 257
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=30.29 E-value=4.7e+02 Score=24.66 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=29.6
Q ss_pred EEEeHHHHHHHHHHHHHhCCCcceEEecCcCC----cHHHHHHHHHcCC-cEEEc
Q 015304 35 YILDLGVVVTLYNQMISKLPMIHPHYAVKCNP----EPALLEALAALGS-NFDCA 84 (409)
Q Consensus 35 ~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~----~~~vl~~l~~~G~-g~~va 84 (409)
+.-|.+.+.+-++++++... . --.+|-.+ ..++++.+.+.|+ ++.+.
T Consensus 138 l~~~~~~~~eiv~~vr~~~~-~--pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 138 IGQDPELSADVVKAVKDKTD-V--PVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred cccCHHHHHHHHHHHHHhcC-C--CEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 44566777777777777652 2 22456554 2567777888887 66653
No 258
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=30.22 E-value=3.5e+02 Score=24.74 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCCCCcEEeecCCCCcC
Q 015304 211 AAKAVFETAARLGNNKMRVLDIGGGFSFT 239 (409)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~ldiGGG~~~~ 239 (409)
.++++.+++++.|+ ..+++-..||.|+.
T Consensus 171 ~~~~viE~L~eeGi-Rd~v~v~vGGApvt 198 (227)
T COG5012 171 GMKDVIELLKEEGI-RDKVIVMVGGAPVT 198 (227)
T ss_pred HHHHHHHHHHHcCC-ccCeEEeecCcccc
Confidence 35677888899999 88888888998885
No 259
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=29.77 E-value=1.4e+02 Score=28.64 Aligned_cols=88 Identities=10% Similarity=0.125 Sum_probs=51.2
Q ss_pred EEEEeHHHHHHHHHHHHHhCC---CcceEEecCcCC--cHHHHHHHHHcCC-cEEE------------cCHHHHHHHHhC
Q 015304 34 FYILDLGVVVTLYNQMISKLP---MIHPHYAVKCNP--EPALLEALAALGS-NFDC------------ASRSEIEAVLAL 95 (409)
Q Consensus 34 ~~v~d~~~l~~n~~~~~~~~~---~~~i~yavKan~--~~~vl~~l~~~G~-g~~v------------aS~~E~~~a~~~ 95 (409)
.++-|.+.+.+-++++++..+ .+++.--..-+. ...+++.+.+.|+ .+.| +..+.+..+++.
T Consensus 102 ~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~ 181 (309)
T PF01207_consen 102 ALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEA 181 (309)
T ss_dssp GGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC
T ss_pred hhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhc
Confidence 445688899999999998876 122222222122 4788899999998 5544 444555555444
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHc-CCc
Q 015304 96 GVSPDRIIYANPCKPVSHIKYAANV-GVN 123 (409)
Q Consensus 96 G~~~~~Ii~~gp~k~~~~i~~a~~~-gv~ 123 (409)
++ -.++.+|...+.++++..++. |+.
T Consensus 182 -~~-ipvi~NGdI~s~~d~~~~~~~tg~d 208 (309)
T PF01207_consen 182 -LP-IPVIANGDIFSPEDAERMLEQTGAD 208 (309)
T ss_dssp --T-SEEEEESS--SHHHHHHHCCCH-SS
T ss_pred -cc-ceeEEcCccCCHHHHHHHHHhcCCc
Confidence 33 468888888888888877665 554
No 260
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=29.73 E-value=2.2e+02 Score=26.32 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=54.1
Q ss_pred CcCCcHHHHHHHHHcCCcE---E----EcCHHHHHHHHhC--CCCCCcEEEeCCCCCHHHHHHHHHcCCc---EEEecCH
Q 015304 63 KCNPEPALLEALAALGSNF---D----CASRSEIEAVLAL--GVSPDRIIYANPCKPVSHIKYAANVGVN---LTTFDSV 130 (409)
Q Consensus 63 Kan~~~~vl~~l~~~G~g~---~----vaS~~E~~~a~~~--G~~~~~Ii~~gp~k~~~~i~~a~~~gv~---~~~vds~ 130 (409)
-.-+++.+++.+...|..+ | +.+..++..+..+ ......++-... .+...++.+++.|+. +..|+|.
T Consensus 18 ~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~-~~~~~i~~~Ld~Ga~gIivP~v~s~ 96 (249)
T TIGR02311 18 LGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI-GDPVLIKQLLDIGAQTLLVPMIETA 96 (249)
T ss_pred EeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC-CCHHHHHHHhCCCCCEEEecCcCCH
Confidence 3456789999999888633 2 3455555544433 112234554333 466799999988764 4589999
Q ss_pred HHHHHHHhHCCCCeEEEE
Q 015304 131 EELHKIRKWHPKCDLLIR 148 (409)
Q Consensus 131 ~el~~i~~~~~~~~v~lR 148 (409)
+|++.+.+..+-...+.|
T Consensus 97 e~a~~~v~~~~y~P~G~R 114 (249)
T TIGR02311 97 EQAEAAVAATRYPPMGIR 114 (249)
T ss_pred HHHHHHHHHcCCCCCCcC
Confidence 999999887643333444
No 261
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.66 E-value=1e+02 Score=29.16 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 81 FDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 81 ~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
+||.|++|+..+.++|. +.|.+.+. ++++++.+++
T Consensus 187 VEv~~leea~~a~~aga--DiI~LDn~--~~e~l~~~v~ 221 (278)
T PRK08385 187 VEVESLEDALKAAKAGA--DIIMLDNM--TPEEIREVIE 221 (278)
T ss_pred EEeCCHHHHHHHHHcCc--CEEEECCC--CHHHHHHHHH
No 262
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.62 E-value=4.9e+02 Score=24.62 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=22.5
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
|++|.|.+|+..+.+.|. +-|.+ .+ .++++++.+.+
T Consensus 192 gvsv~tleea~~A~~~ga--DyI~l-D~-~~~e~l~~~~~ 227 (277)
T PRK08072 192 EVETETEEQVREAVAAGA--DIIMF-DN-RTPDEIREFVK 227 (277)
T ss_pred EEEeCCHHHHHHHHHcCC--CEEEE-CC-CCHHHHHHHHH
Confidence 677777777777776664 34444 22 45666776654
No 263
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.60 E-value=4.1e+02 Score=26.02 Aligned_cols=92 Identities=20% Similarity=0.291 Sum_probs=66.0
Q ss_pred cEEEEeHHH-----HHHHHHHHHHhCCCcceEEecCcC-CcHHHHHHHHHcCC-cEE--------EcCH-----------
Q 015304 33 PFYILDLGV-----VVTLYNQMISKLPMIHPHYAVKCN-PEPALLEALAALGS-NFD--------CASR----------- 86 (409)
Q Consensus 33 P~~v~d~~~-----l~~n~~~~~~~~~~~~i~yavKan-~~~~vl~~l~~~G~-g~~--------vaS~----------- 86 (409)
-+.++|... +.+-++.+|+.+|+..+. =-| ..++-++.|.++|+ .+- |.|.
T Consensus 124 D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vI---aGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQlt 200 (346)
T PRK05096 124 NFICIDVANGYSEHFVQFVAKAREAWPDKTIC---AGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLS 200 (346)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHhCCCCcEE---EecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHH
Confidence 677777654 677788999999976553 334 36778888988887 443 4443
Q ss_pred --HH-HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 87 --SE-IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 87 --~E-~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
.| ++.+++.|+ +||-.|.++..-+|..|+..|...+.+.|+
T Consensus 201 AV~~~a~~a~~~gv---piIADGGi~~sGDI~KAlaaGAd~VMlGsl 244 (346)
T PRK05096 201 AVIECADAAHGLGG---QIVSDGGCTVPGDVAKAFGGGADFVMLGGM 244 (346)
T ss_pred HHHHHHHHHHHcCC---CEEecCCcccccHHHHHHHcCCCEEEeChh
Confidence 12 334455564 689999999999999999999887777765
No 264
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.58 E-value=4.1e+02 Score=24.24 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=47.1
Q ss_pred CCCcceEEecCcCC---cHHHHHHHHHcCC-cEEEcC----HHHHHHHHh----CCCCCCcEEEeCCCCCHHHHHHHHHc
Q 015304 53 LPMIHPHYAVKCNP---EPALLEALAALGS-NFDCAS----RSEIEAVLA----LGVSPDRIIYANPCKPVSHIKYAANV 120 (409)
Q Consensus 53 ~~~~~i~yavKan~---~~~vl~~l~~~G~-g~~vaS----~~E~~~a~~----~G~~~~~Ii~~gp~k~~~~i~~a~~~ 120 (409)
+...++...+.... ...+++.|.+.|+ -+|+.- ..|....+. ..++ +-++=.|...+.++.+.|++.
T Consensus 12 l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a~~a~~a 90 (222)
T PRK07114 12 MKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELP-GMILGVGSIVDAATAALYIQL 90 (222)
T ss_pred HHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHHHHHHHc
Confidence 33345666666665 5778888999998 788765 344333222 2232 334444778999999999999
Q ss_pred CCcE
Q 015304 121 GVNL 124 (409)
Q Consensus 121 gv~~ 124 (409)
|..+
T Consensus 91 GA~F 94 (222)
T PRK07114 91 GANF 94 (222)
T ss_pred CCCE
Confidence 9984
No 265
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=29.42 E-value=5.5e+02 Score=25.16 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=79.9
Q ss_pred EEEeHHHHHHHHHHHHHhCCCcceEEecCcCC-------cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEe-
Q 015304 35 YILDLGVVVTLYNQMISKLPMIHPHYAVKCNP-------EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYA- 105 (409)
Q Consensus 35 ~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~-------~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~- 105 (409)
..+....+++-++...++ +.+++.++=+.. ....++.|.+.|+ .+.++.++=+..+++.+ |.-++.++
T Consensus 44 ~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~-p~l~ih~S~ 120 (347)
T COG0826 44 LNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERG-PDLPIHVST 120 (347)
T ss_pred ccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhC-CCCcEEEee
Confidence 346667777777666542 466777766555 2467888888999 99999999999999987 33456655
Q ss_pred -CCCCCHHHHHHHHHcCCcEEEe---cCHHHHHHHHhHCCCCeEEEEEe
Q 015304 106 -NPCKPVSHIKYAANVGVNLTTF---DSVEELHKIRKWHPKCDLLIRIK 150 (409)
Q Consensus 106 -gp~k~~~~i~~a~~~gv~~~~v---ds~~el~~i~~~~~~~~v~lRv~ 150 (409)
....+.+.+++..+.|..++++ -|.+|+..+.+..+..++=+-|+
T Consensus 121 q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVh 169 (347)
T COG0826 121 QANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVH 169 (347)
T ss_pred eEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEe
Confidence 3456778899999999865433 47788888877765445545555
No 266
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.25 E-value=4.3e+02 Score=23.80 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHcCCc--EEEecCHHHHHHHHhH
Q 015304 109 KPVSHIKYAANVGVN--LTTFDSVEELHKIRKW 139 (409)
Q Consensus 109 k~~~~i~~a~~~gv~--~~~vds~~el~~i~~~ 139 (409)
.+++.++.+-+.|.. ..++++.++++++.+.
T Consensus 189 ~~~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~ 221 (233)
T cd08582 189 LNPAFIKALRDAGLKLNVWTVDDAEDAKRLIEL 221 (233)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHC
Confidence 456667777777764 3467777777776554
No 267
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.98 E-value=2.8e+02 Score=26.94 Aligned_cols=109 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhc-CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCc------------HHHHHHHHHcCC-c
Q 015304 15 LTEFVRSTILKR-QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPE------------PALLEALAALGS-N 80 (409)
Q Consensus 15 ~~~~~~~~~~~~-~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~------------~~vl~~l~~~G~-g 80 (409)
+++|+....-.. +++|. . +.=...-+.+-++++|++.++ .+-..+|.|+. ..+++.|.+.|+ .
T Consensus 176 l~qFlsp~~N~R~D~yGG-s-lenR~rf~~EiI~aIR~avG~-d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~ 252 (338)
T cd04733 176 LSQFLSPLTNKRTDEYGG-S-LENRARLLLEIYDAIRAAVGP-GFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDL 252 (338)
T ss_pred HHHhcCCcCCCCCccCCC-C-HHHHHHHHHHHHHHHHHHcCC-CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCE
Q ss_pred EEEcCH----------------------HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcC-CcEEEe
Q 015304 81 FDCASR----------------------SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVG-VNLTTF 127 (409)
Q Consensus 81 ~~vaS~----------------------~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~g-v~~~~v 127 (409)
++|+.. .++....+.-++ -.++..|...++++.+.+++.| +..+.+
T Consensus 253 iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 253 VELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK-TPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred EEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcC-CCEEEeCCCCCHHHHHHHHHcCCCCeeee
No 268
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=28.93 E-value=1e+02 Score=29.51 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=31.3
Q ss_pred CHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH--HHHHHHHhHCCCCeEEEEEe
Q 015304 85 SRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV--EELHKIRKWHPKCDLLIRIK 150 (409)
Q Consensus 85 S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~--~el~~i~~~~~~~~v~lRv~ 150 (409)
|..++....+.-.+..+|..-- -+.++..+|++.|+.++.+|+. +++..+.+..+ .++.|-+.
T Consensus 194 ~i~~av~~~r~~~~~~kIeVEv--~sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~~-~~~~ieaS 258 (296)
T PRK09016 194 SIRQAVEKAFWLHPDVPVEVEV--ENLDELDQALKAGADIIMLDNFTTEQMREAVKRTN-GRALLEVS 258 (296)
T ss_pred cHHHHHHHHHHhCCCCCEEEEe--CCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc-CCeEEEEE
Confidence 4444442222223333444332 3567777777777776667654 44444444322 24555444
No 269
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=28.92 E-value=4e+02 Score=26.29 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=53.9
Q ss_pred cCCcEEEcCHHHHHHHHhCCCCCCcEEEeC------CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEE
Q 015304 77 LGSNFDCASRSEIEAVLALGVSPDRIIYAN------PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLL 146 (409)
Q Consensus 77 ~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g------p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~ 146 (409)
=||-+.|...+++..+.++-..++-|+.+- |. +...|..|...|..+=.|.|.-+.-+|++.+|..+|.
T Consensus 60 PGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPG-s~~SL~~ara~GadVriVYSpldAl~iA~~nP~k~vV 134 (364)
T PRK15062 60 PGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPG-SKGSLLEAKAEGADVRIVYSPLDALKIARENPDKEVV 134 (364)
T ss_pred CCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCC-CcCCHHHHHhCCCCEEEEeCHHHHHHHHHHCCCCeEE
Confidence 378899999999999999877766677661 32 3456888888888755899999999999988876653
No 270
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=28.87 E-value=5.2e+02 Score=24.66 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=58.4
Q ss_pred HHHHHhCCC-CCCcEEEeCCCC---CHHHHHHHHHcCCcEEEecCHHH-----HH-HHHhHCC-CCeEEEEEecCC-CCC
Q 015304 89 IEAVLALGV-SPDRIIYANPCK---PVSHIKYAANVGVNLTTFDSVEE-----LH-KIRKWHP-KCDLLIRIKPPD-DSG 156 (409)
Q Consensus 89 ~~~a~~~G~-~~~~Ii~~gp~k---~~~~i~~a~~~gv~~~~vds~~e-----l~-~i~~~~~-~~~v~lRv~~~~-~~~ 156 (409)
+..+++.+. .+.+++..|.-. ++++.+++.++|+..++.+.+.+ +. .+..... ...+.|-++... ++.
T Consensus 166 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps 245 (307)
T TIGR01227 166 FRQILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAA 245 (307)
T ss_pred HHHHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChh
Confidence 555555443 345677776532 45778888899987555555433 11 2222211 224666665421 211
Q ss_pred --CCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCC
Q 015304 157 --AKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGS 197 (409)
Q Consensus 157 --~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs 197 (409)
....+-...|++ ..|+.++++.+... -++.|+.+---+
T Consensus 246 ~aPgtg~p~pgGLt--~~e~~~il~~l~~~-~~vvg~DvvE~~ 285 (307)
T TIGR01227 246 HAPGVSAPAPGGLY--PDELLELVKRIAAS-DKVRGAEIAEVN 285 (307)
T ss_pred hCCCCCCCCCCCCC--HHHHHHHHHHHhcC-CCEEEEEEEEEC
Confidence 011122567999 88888888876432 367777665433
No 271
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=28.85 E-value=3.7e+02 Score=24.05 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=45.9
Q ss_pred eHHHHHHHHHHHHHhCCCcceEEecCcCC-------cHHHHHHHHHcCC-cEEEcCH------------HHHHHHHhCCC
Q 015304 38 DLGVVVTLYNQMISKLPMIHPHYAVKCNP-------EPALLEALAALGS-NFDCASR------------SEIEAVLALGV 97 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i~yavKan~-------~~~vl~~l~~~G~-g~~vaS~------------~E~~~a~~~G~ 97 (409)
+.+.+.+-++++++..+ +-..+|.+. ...+++.+.+.|+ .+.+... ..+..+++. .
T Consensus 107 ~~~~~~eii~~v~~~~~---~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~-~ 182 (231)
T cd02801 107 DPELVAEIVRAVREAVP---IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA-V 182 (231)
T ss_pred CHHHHHHHHHHHHHhcC---CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC-C
Confidence 55667778888887765 233455442 3466777888887 5544332 112222222 1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCc
Q 015304 98 SPDRIIYANPCKPVSHIKYAANV-GVN 123 (409)
Q Consensus 98 ~~~~Ii~~gp~k~~~~i~~a~~~-gv~ 123 (409)
+ -.|+.+|...+.+++..+++. |+.
T Consensus 183 ~-ipvi~~Ggi~~~~d~~~~l~~~gad 208 (231)
T cd02801 183 S-IPVIANGDIFSLEDALRCLEQTGVD 208 (231)
T ss_pred C-CeEEEeCCCCCHHHHHHHHHhcCCC
Confidence 2 356666666667777666665 454
No 272
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=28.80 E-value=3.9e+02 Score=25.53 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCc
Q 015304 86 RSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKY 165 (409)
Q Consensus 86 ~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srf 165 (409)
..++..+....+.+.+|++..|... .....+...|+.+..+.+.++++... .+.+..+=.+|. +-.
T Consensus 73 ~~~~i~~~~~~l~~g~vl~~~p~y~-~~~~~~~~~g~~~~~~~d~~~l~~~~---~~~~~v~i~~p~----------NPt 138 (330)
T TIGR01140 73 AQEAIYLLPRLLAPGRVLVLAPTYS-EYARAWRAAGHEVVELPDLDRLPAAL---EELDVLVLCNPN----------NPT 138 (330)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCcH-HHHHHHHHcCCEEEEeCCHHHHHhhc---ccCCEEEEeCCC----------CCC
Confidence 4444433333344457888888653 44455567888766777777766542 233333224431 233
Q ss_pred CCCCCcccHHHHHHHHHHcCC
Q 015304 166 GVDHHPQEIVPLLEAAEASGL 186 (409)
Q Consensus 166 Gi~~~~~~~~~~~~~~~~~~l 186 (409)
|...+.+++.++++.+++.++
T Consensus 139 G~~~~~~~~~~l~~~a~~~~~ 159 (330)
T TIGR01140 139 GRLIPPETLLALAARLRARGG 159 (330)
T ss_pred CCCCCHHHHHHHHHHhHhcCC
Confidence 443335677777777766654
No 273
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.78 E-value=97 Score=29.53 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=47.2
Q ss_pred CcceEEecCcCCc-HHHHHHHHHcC--C----cEE------------EcCHHHHHHHHhCCCCCC-cEEEeCCCCCHHHH
Q 015304 55 MIHPHYAVKCNPE-PALLEALAALG--S----NFD------------CASRSEIEAVLALGVSPD-RIIYANPCKPVSHI 114 (409)
Q Consensus 55 ~~~i~yavKan~~-~~vl~~l~~~G--~----g~~------------vaS~~E~~~a~~~G~~~~-~Ii~~gp~k~~~~i 114 (409)
++++.--=|+-|- ..+.+.....| . +.. +.|..+.....+.-+++. +|-..- -+.+++
T Consensus 132 ~~~i~~TRKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv--~tleea 209 (288)
T PRK07428 132 PTQLVDTRKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVET--ETLEQV 209 (288)
T ss_pred CeEEEecCCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEEC--CCHHHH
Confidence 4667666777773 33444443332 1 211 335556554444434433 343332 478899
Q ss_pred HHHHHcCCcEEEecCH--HHHHHHHhH
Q 015304 115 KYAANVGVNLTTFDSV--EELHKIRKW 139 (409)
Q Consensus 115 ~~a~~~gv~~~~vds~--~el~~i~~~ 139 (409)
.+|++.|+..+.+|+. +++.++.+.
T Consensus 210 ~eA~~~GaD~I~LDn~~~e~l~~av~~ 236 (288)
T PRK07428 210 QEALEYGADIIMLDNMPVDLMQQAVQL 236 (288)
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 9999999987778754 666666554
No 274
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.68 E-value=2.8e+02 Score=24.79 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=64.4
Q ss_pred EeHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHHc--CC--cEE-EcCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 37 LDLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAAL--GS--NFD-CASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~~--G~--g~~-vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
.|.+...+..+.+.+. ++-+++.+- +.....+++.+.+. ++ |+. |-+.++++.+.++|. +.++ .|..+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~--t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA---~Fiv-SP~~~ 90 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLR--TPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA---QFIV-SPGFD 90 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETT--STTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT----SEEE-ESS--
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC--CccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC---CEEE-CCCCC
Confidence 3455556666665542 333555543 33344556655542 33 443 677888999999995 4555 45578
Q ss_pred HHHHHHHHHcCCcE-EEecCHHHHHHHHhHCCCCeEEEEEec
Q 015304 111 VSHIKYAANVGVNL-TTFDSVEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 111 ~~~i~~a~~~gv~~-~~vds~~el~~i~~~~~~~~v~lRv~~ 151 (409)
++-++++.++|+.. .-+-+..|+....+..-+ .+++-|
T Consensus 91 ~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~---~vK~FP 129 (196)
T PF01081_consen 91 PEVIEYAREYGIPYIPGVMTPTEIMQALEAGAD---IVKLFP 129 (196)
T ss_dssp HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-S---EEEETT
T ss_pred HHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCC---EEEEec
Confidence 89999999999963 468999999888776532 467766
No 275
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=28.40 E-value=3.4e+02 Score=26.26 Aligned_cols=87 Identities=10% Similarity=0.113 Sum_probs=60.1
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC----CcceEEecCcCC--cHHHHHHHHHcCC-cEEE------------cCHHHHHHHH
Q 015304 33 PFYILDLGVVVTLYNQMISKLP----MIHPHYAVKCNP--EPALLEALAALGS-NFDC------------ASRSEIEAVL 93 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~----~~~i~yavKan~--~~~vl~~l~~~G~-g~~v------------aS~~E~~~a~ 93 (409)
..++-+.+.+.+-+++++++.+ -+++.--.+-.. ...+++.+.+.|+ -+.| +..+.+..++
T Consensus 114 a~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk 193 (323)
T COG0042 114 AALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELK 193 (323)
T ss_pred hhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHH
Confidence 5778999999999999999874 133333333332 4679999999988 4443 2344455555
Q ss_pred hCCCCCCcEEEeCCCCCHHHHHHHHHc
Q 015304 94 ALGVSPDRIIYANPCKPVSHIKYAANV 120 (409)
Q Consensus 94 ~~G~~~~~Ii~~gp~k~~~~i~~a~~~ 120 (409)
+. ++.-.|+.+|..++.++.+..+++
T Consensus 194 ~~-~~~ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 194 EA-VPSIPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred Hh-CCCCeEEeCCCcCCHHHHHHHHHh
Confidence 44 443468888888999998888875
No 276
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=28.30 E-value=37 Score=24.71 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=10.2
Q ss_pred CCCCCCCCCEEEEcC
Q 015304 365 KLPELEVTDWLVFSE 379 (409)
Q Consensus 365 ~lp~l~~GD~l~~~~ 379 (409)
.+|++++||||.++.
T Consensus 34 lv~~v~~Gd~VLVHa 48 (68)
T PF01455_consen 34 LVPDVKVGDYVLVHA 48 (68)
T ss_dssp TCTSB-TT-EEEEET
T ss_pred EeCCCCCCCEEEEec
Confidence 357899999998874
No 277
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=28.06 E-value=4.6e+02 Score=25.49 Aligned_cols=120 Identities=9% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCeeEEEeeccccHHHHHHHHHhhc-CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCC------------cH
Q 015304 2 GGQRVTTVVTKEELTEFVRSTILKR-QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNP------------EP 68 (409)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~------------~~ 68 (409)
.|.++|..-++ -+++|+..+.-.. +++|. . +.-...-+.+-++++++..+ ..+...+|-++ ..
T Consensus 156 DgVeih~ahGy-Ll~qFlsp~~N~RtD~yGG-s-lenR~r~~~eiv~~ir~~vg-~~~~v~iRl~~~~~~~~G~~~~e~~ 231 (343)
T cd04734 156 DGVELQAAHGH-LIDQFLSPLTNRRTDEYGG-S-LENRMRFLLEVLAAVRAAVG-PDFIVGIRISGDEDTEGGLSPDEAL 231 (343)
T ss_pred CEEEEccccch-HHHHhhCCCcCCCCCcCCC-C-HHHHhHHHHHHHHHHHHHcC-CCCeEEEEeehhhccCCCCCHHHHH
Q ss_pred HHHHHHHHcC-C-cEEEcC-----------------------HHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcC-C
Q 015304 69 ALLEALAALG-S-NFDCAS-----------------------RSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVG-V 122 (409)
Q Consensus 69 ~vl~~l~~~G-~-g~~vaS-----------------------~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~g-v 122 (409)
.+++.|.+.| + .++|+. ..-+..+++.- .-.++.+|...++++++.+++.| +
T Consensus 232 ~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~ 309 (343)
T cd04734 232 EIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHA 309 (343)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCC
Q ss_pred cEEEe
Q 015304 123 NLTTF 127 (409)
Q Consensus 123 ~~~~v 127 (409)
..+.+
T Consensus 310 D~V~~ 314 (343)
T cd04734 310 DMVGM 314 (343)
T ss_pred Ceeee
No 278
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=28.00 E-value=4.2e+02 Score=25.37 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=29.8
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
+-+||-|.+|+..+.++|. +.|.+.+. ++++++.+++
T Consensus 211 IeVEv~sleea~ea~~~ga--DiI~LDn~--s~e~~~~av~ 247 (296)
T PRK09016 211 VEVEVENLDELDQALKAGA--DIIMLDNF--TTEQMREAVK 247 (296)
T ss_pred EEEEeCCHHHHHHHHHcCC--CEEEeCCC--ChHHHHHHHH
Confidence 4789999999999999996 45666554 6789999876
No 279
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=27.95 E-value=2e+02 Score=20.63 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=39.7
Q ss_pred HHHHHHhCCCCCCcEEEeCCCC---CHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEec
Q 015304 88 EIEAVLALGVSPDRIIYANPCK---PVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 88 E~~~a~~~G~~~~~Ii~~gp~k---~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~ 151 (409)
-+..|++++.....++++-... ..+.++.+.+.|+. +..-|.+.|+++......+.|...+.+
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~-v~~v~~~~l~~ls~~~~hQGv~a~v~~ 72 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIP-VYEVSKKVLDKLSDTENHQGVVAVVKP 72 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-E-EEEE-HHHHHHCTTTSS-TTEEEEEE-
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCe-EEEeCHHHHHHHcCCCCCCeEEEEEeC
Confidence 3566778875556666664411 23556777788997 566778889998876566778887775
No 280
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.92 E-value=5.2e+02 Score=24.52 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCC-cceEEecCcCCcHHHHHHHHHcCC---cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHH
Q 015304 42 VVTLYNQMISKLPM-IHPHYAVKCNPEPALLEALAALGS---NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYA 117 (409)
Q Consensus 42 l~~n~~~~~~~~~~-~~i~yavKan~~~~vl~~l~~~G~---g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a 117 (409)
+.+.++++|+..|. .++ .|-+....++.+.+ +.|+ -+|=.|++|++.+.+.--....|..+|. -+.+.++.-
T Consensus 179 i~~av~~~r~~~~~~~kI--eVEv~slee~~ea~-~~gaDiImLDn~s~e~l~~av~~~~~~~~leaSGg-I~~~ni~~y 254 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHV--EVEVDRLDQIEPVL-AAGVDTIMLDNFSLDDLREGVELVDGRAIVEASGN-VNLNTVGAI 254 (281)
T ss_pred HHHHHHHHHHhCCCCCcE--EEEeCCHHHHHHHH-hcCCCEEEECCCCHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHH
Confidence 56677777777762 333 34555555655544 5665 6788999999988875211224455566 578888888
Q ss_pred HHcCCcEEEecCH
Q 015304 118 ANVGVNLTTFDSV 130 (409)
Q Consensus 118 ~~~gv~~~~vds~ 130 (409)
.+.|+..+++.++
T Consensus 255 A~tGVD~Is~gal 267 (281)
T PRK06543 255 ASTGVDVISVGAL 267 (281)
T ss_pred HhcCCCEEEeCcc
Confidence 8899987777654
No 281
>PRK01722 formimidoylglutamase; Provisional
Probab=27.66 E-value=4.5e+02 Score=25.24 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=54.1
Q ss_pred CCCCcEEEeCCCC---CHHHHHHHHHcCCcEEEecCHHH--H----HHHHhHCC-CCeEEEEEecCC-CCC-C-CCCCCC
Q 015304 97 VSPDRIIYANPCK---PVSHIKYAANVGVNLTTFDSVEE--L----HKIRKWHP-KCDLLIRIKPPD-DSG-A-KHPLDS 163 (409)
Q Consensus 97 ~~~~~Ii~~gp~k---~~~~i~~a~~~gv~~~~vds~~e--l----~~i~~~~~-~~~v~lRv~~~~-~~~-~-~~~~~s 163 (409)
+.+++++..|.-. ++++.+++-+.|+..++.+.+.+ + +.+.+..+ ...|.|-++... ++. . ...+..
T Consensus 182 ~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~i~~~~~vyvS~DiDvlDps~aPgtgtp~ 261 (320)
T PRK01722 182 IRGFHYACIGVSRASNTQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDLDVLPAAEAPGVSAPA 261 (320)
T ss_pred CCCCCEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcChhhCCCCCCCc
Confidence 4457888776532 45788888899987555444432 1 12222212 234666665421 211 0 112235
Q ss_pred CcCCCCCcccHHHHHHHHHHcCCeEEEEEEee
Q 015304 164 KYGVDHHPQEIVPLLEAAEASGLSVVGVAFHI 195 (409)
Q Consensus 164 rfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~ 195 (409)
..|++ ..|+.++++.+.+. -++.|+.+--
T Consensus 262 pgGls--~~e~~~il~~l~~~-~~vvg~DivE 290 (320)
T PRK01722 262 AGGVP--LETLLRAIEPICRS-GKLQAADLVE 290 (320)
T ss_pred CCCCC--HHHHHHHHHHHHhc-CCEEEEEEEE
Confidence 78999 88999988877443 3566766553
No 282
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.54 E-value=3.3e+02 Score=26.64 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhc-CCCCCccEEEEeHHHHHHHHHHHHHhCC---CcceEEecCcCCcH------------HHHHHHHHcC
Q 015304 15 LTEFVRSTILKR-QEFDEVPFYILDLGVVVTLYNQMISKLP---MIHPHYAVKCNPEP------------ALLEALAALG 78 (409)
Q Consensus 15 ~~~~~~~~~~~~-~~~~t~P~~v~d~~~l~~n~~~~~~~~~---~~~i~yavKan~~~------------~vl~~l~~~G 78 (409)
+.+|+....-.. +++|. . +.=...-+.+-++.++++.+ ...+.-.+|-|+.. .+++.|.+.|
T Consensus 171 l~qFlsp~~N~R~D~yGG-s-lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~G 248 (353)
T cd04735 171 IQQFFSPHSNRRTDEWGG-S-LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKG 248 (353)
T ss_pred HHHhcCCccCCCCcccCC-c-HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcC
Q ss_pred C-cEEEcC--------------HHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCC
Q 015304 79 S-NFDCAS--------------RSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGV 122 (409)
Q Consensus 79 ~-g~~vaS--------------~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv 122 (409)
+ .++|+. ..-++.+++.-...-.++.+|...++++.+.+++.|+
T Consensus 249 vD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~ga 307 (353)
T cd04735 249 LDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGA 307 (353)
T ss_pred CCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCC
No 283
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.52 E-value=7.1e+02 Score=25.81 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=22.5
Q ss_pred ecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHH
Q 015304 127 FDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAA 181 (409)
Q Consensus 127 vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~ 181 (409)
|-+.+..+.+.+.... .|+|. .++|.-|.|....|+. ..++..+.+..
T Consensus 292 V~t~e~a~~li~aGAd---~I~vg--~g~Gs~c~tr~~~~~g--~~~~~ai~~~~ 339 (502)
T PRK07107 292 VVDREGFRYLAEAGAD---FVKVG--IGGGSICITREQKGIG--RGQATALIEVA 339 (502)
T ss_pred ccCHHHHHHHHHcCCC---EEEEC--CCCCcCcccccccCCC--ccHHHHHHHHH
Confidence 4444444444443221 34553 3344445454456665 45555554433
No 284
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.40 E-value=6.5e+02 Score=25.30 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=54.5
Q ss_pred cEEEEeH-----HHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc----C-----------------
Q 015304 33 PFYILDL-----GVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA----S----------------- 85 (409)
Q Consensus 33 P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va----S----------------- 85 (409)
.+.++|. ..+.+-++.+++.+|+..+. ++--.+.+-++.+.++|+ ++.|. |
T Consensus 167 DvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi--~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~lta 244 (404)
T PRK06843 167 DILVIDSAHGHSTRIIELVKKIKTKYPNLDLI--AGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITA 244 (404)
T ss_pred CEEEEECCCCCChhHHHHHHHHHhhCCCCcEE--EEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHH
Confidence 5555554 34666677777777765443 344456677777777776 44332 1
Q ss_pred HHHHHHHH-hCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 86 RSEIEAVL-ALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 86 ~~E~~~a~-~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
..|+..+. +.+ -+|+..|..++..++..|+..|...+.+.+
T Consensus 245 i~~v~~~~~~~~---vpVIAdGGI~~~~Di~KALalGA~aVmvGs 286 (404)
T PRK06843 245 ICDVYEVCKNTN---ICIIADGGIRFSGDVVKAIAAGADSVMIGN 286 (404)
T ss_pred HHHHHHHHhhcC---CeEEEeCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 11222222 123 357778888888888888888876555554
No 285
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=27.30 E-value=5.5e+02 Score=25.21 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=35.8
Q ss_pred ecCcCCcHHHHHHHHHcCC-cEEEc------------CHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEe
Q 015304 61 AVKCNPEPALLEALAALGS-NFDCA------------SRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF 127 (409)
Q Consensus 61 avKan~~~~vl~~l~~~G~-g~~va------------S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~v 127 (409)
.+|--.++..++.+.+.|+ ++.|+ +..-+..+.++--+.-.|+..|...+..++-.|+..|...+.+
T Consensus 225 ivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~i 304 (351)
T cd04737 225 IVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAV 304 (351)
T ss_pred EEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3564445666677777777 66552 1122222222111113566677777777777777777654333
Q ss_pred c
Q 015304 128 D 128 (409)
Q Consensus 128 d 128 (409)
.
T Consensus 305 G 305 (351)
T cd04737 305 G 305 (351)
T ss_pred C
Confidence 3
No 286
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=27.22 E-value=5.1e+02 Score=24.07 Aligned_cols=132 Identities=14% Similarity=0.188 Sum_probs=65.7
Q ss_pred HHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHH-HHcCCeEEEEEEeeCCCCCCHHHHHHHHH
Q 015304 132 ELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAA-EASGLSVVGVAFHIGSAATKFAAYRGAIA 210 (409)
Q Consensus 132 el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~~~~~~~~~i~ 210 (409)
.|......+|.....+=|||..++|.. ..-+ + ..+....+.++ +..|+++.| +.|.+-+.++.+...+.+.
T Consensus 20 ~l~~a~~~~p~~~f~vIiNP~sGPG~~----~~~~-p--d~~Y~~~i~~L~~~~nv~vlG-YV~T~Yg~R~~~~V~~dI~ 91 (253)
T PF12138_consen 20 PLYDAIAAHPSVPFTVIINPNSGPGSA----PDPW-P--DANYAAAIPRLNSYANVRVLG-YVHTSYGSRPLSEVKADID 91 (253)
T ss_pred HHHHHHhcCCCCcEEEEEcCCCCCCCC----CCCC-C--CHHHHHHHHHHHhcCCCcEEE-EEEccccCCCHHHHHHHHH
Confidence 333334445666666668885444310 0122 3 56677778888 557999999 3666555556666555555
Q ss_pred HHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceee
Q 015304 211 AAKAVFETAARLGNNKMRVLDIGGGFSFTNSN-TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFT 282 (409)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv 282 (409)
+...........+ +.+.|=| .+-.. +..-..+...|...++.-+... +...++.-||...-
T Consensus 92 ~Y~~W~~~~~~~~------~~vdGIF-fDE~p~~~~~~~y~~~l~~~vk~~~~~~----~~~~VV~NPGt~~p 153 (253)
T PF12138_consen 92 TYASWYGQSEDYG------YRVDGIF-FDEAPNDYANLPYYQNLYNYVKSAFGLG----GDGLVVLNPGTAVP 153 (253)
T ss_pred HHhhccccccCCC------cccceEE-EecCCCcHHHHHHHHHHHHHHHhccccC----CCCEEEeCCCCCCC
Confidence 5433221111001 2334432 22110 1122234445555555522211 34568899997554
No 287
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=27.17 E-value=44 Score=24.92 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.9
Q ss_pred CCCCCCCCEEEEcC
Q 015304 366 LPELEVTDWLVFSE 379 (409)
Q Consensus 366 lp~l~~GD~l~~~~ 379 (409)
+|++++||||.++.
T Consensus 33 v~~~~vGD~VLVH~ 46 (76)
T TIGR00074 33 VGEVKVGDYVLVHV 46 (76)
T ss_pred eCCCCCCCEEEEec
Confidence 47899999998875
No 288
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=27.11 E-value=6.7e+02 Score=25.40 Aligned_cols=105 Identities=8% Similarity=0.107 Sum_probs=56.1
Q ss_pred CCCcEEEeCCCC---CHHHHHHHHH---------cCCcEEEec------CHHHHHHHHhHCCCCeEEEEEecCCCCCC--
Q 015304 98 SPDRIIYANPCK---PVSHIKYAAN---------VGVNLTTFD------SVEELHKIRKWHPKCDLLIRIKPPDDSGA-- 157 (409)
Q Consensus 98 ~~~~Ii~~gp~k---~~~~i~~a~~---------~gv~~~~vd------s~~el~~i~~~~~~~~v~lRv~~~~~~~~-- 157 (409)
..+.|.|.|... +++++...++ .++. ++++ +.+.++.+.+..- -||..+.++..
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~e-itie~np~~l~~e~l~~lk~~G~-----~risiGvqS~~~~ 175 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAE-ISIEIDPRYITKDVIDALRDEGF-----NRLSFGVQDFNKE 175 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCe-EEEEeccCcCCHHHHHHHHHcCC-----CEEEEcCCCCCHH
Confidence 345777776543 3566655432 1222 3443 4567777766531 24444332211
Q ss_pred CCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHH
Q 015304 158 KHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAA 211 (409)
Q Consensus 158 ~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~ 211 (409)
..+.-+| +-+ .+++.+.++.+++.++.-+.+.+-+|-...+.+.+.+.++.
T Consensus 176 ~l~~l~r-~~~--~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~ 226 (455)
T TIGR00538 176 VQQAVNR-IQP--EEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEK 226 (455)
T ss_pred HHHHhCC-CCC--HHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHH
Confidence 0111134 334 67778888888888876556666666555566666554433
No 289
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=27.04 E-value=5.3e+02 Score=24.22 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=60.1
Q ss_pred HHHHHHHcCCcEEEecCHHHHHHHHhHCC-CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEE
Q 015304 113 HIKYAANVGVNLTTFDSVEELHKIRKWHP-KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGV 191 (409)
Q Consensus 113 ~i~~a~~~gv~~~~vds~~el~~i~~~~~-~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Gl 191 (409)
-++.+.+.|+. .+.-..-.+..+..... +..+++++|.. +... ... .. +.+..-.+.+-..|..-+|.
T Consensus 48 ~v~~v~~~g~d-av~~~~G~~~~~~~~y~~dvplivkl~~~--t~l~--~~~---~~---~~~~~~ve~ai~lgadAV~~ 116 (265)
T COG1830 48 IVAKVAEAGAD-AVAMTPGIARSVHRGYAHDVPLIVKLNGS--TSLS--PDP---ND---QVLVATVEDAIRLGADAVGA 116 (265)
T ss_pred HHHHHHhcCCC-EEEecHhHHhhcCccccCCcCEEEEeccc--cccC--CCc---cc---ceeeeeHHHHHhCCCcEEEE
Confidence 44556677887 45667777777765543 77899999852 1111 111 11 11222223333457888889
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Q 015304 192 AFHIGSAATKFAAYRGAIAAAKAVFETAARLGNN 225 (409)
Q Consensus 192 h~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~ 225 (409)
|..+||... .++++.+.++.+.+.++|+|
T Consensus 117 ~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp 145 (265)
T COG1830 117 TVYVGSETE-----REMIENISQVVEDAHELGMP 145 (265)
T ss_pred EEecCCcch-----HHHHHHHHHHHHHHHHcCCc
Confidence 999998642 35677778888899999983
No 290
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=26.98 E-value=2.8e+02 Score=25.88 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHHHHHHc-CC--cEEEcCHHHHHHHHhCCCCCCcEEEeCCCC-CHHHHHHHHHcCCcE
Q 015304 68 PALLEALAAL-GS--NFDCASRSEIEAVLALGVSPDRIIYANPCK-PVSHIKYAANVGVNL 124 (409)
Q Consensus 68 ~~vl~~l~~~-G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k-~~~~i~~a~~~gv~~ 124 (409)
.++++.+.+. ++ .+|..++..++.++++|. .|+-.-... .++-++.+.++|+.+
T Consensus 64 ~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~---~iINsis~~~~~~~~~l~~~~~~~v 121 (257)
T TIGR01496 64 VPVIKALRDQPDVPISVDTYRAEVARAALEAGA---DIINDVSGGQDPAMLEVAAEYGVPL 121 (257)
T ss_pred HHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCchhHHHHHHcCCcE
Confidence 3555666654 54 788888888888888874 355443332 445556666666653
No 291
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=26.77 E-value=3.3e+02 Score=26.51 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCcEE
Q 015304 98 SPDRIIYANPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 98 ~~~~Ii~~gp~k~~~~i~~a~~~gv~~~ 125 (409)
.|+-|++.+|.+....+++|...|+.++
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvI 179 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVA 179 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEE
Confidence 3677888888888788888888888644
No 292
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.56 E-value=3.2e+02 Score=25.59 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHH-HHHhCCCC
Q 015304 39 LGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIE-AVLALGVS 98 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~-~a~~~G~~ 98 (409)
...+..--++++++||+..++.|.=|+ .|.+.|.+.+ |+.+-|+.|+. .+.+.|+.
T Consensus 17 ~~ti~~ie~~~~~~fp~~~V~~AfTS~---~I~~kl~~~~-g~~i~~~~eaL~~L~~~G~~ 73 (262)
T PF06180_consen 17 EKTIDAIEKAVREAFPDYDVRRAFTSR---IIRKKLAERD-GIKIDSPEEALAKLADEGYT 73 (262)
T ss_dssp HHHHHHHHHHHHHCSTTSEEEEEES-H---HHHHHHHHCH-T-----HHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEchHH---HHHHHHHhcC-CCCcCCHHHHHHHHHHCCCC
Confidence 335666667788899998888776554 5677776652 46688888865 45567884
No 293
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=26.49 E-value=5.1e+02 Score=23.84 Aligned_cols=138 Identities=25% Similarity=0.317 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEE
Q 015304 68 PALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLI 147 (409)
Q Consensus 68 ~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~l 147 (409)
...++.+.+.-..+|++--.|+... ...+.|+++.+ -|-|. +++. -+.|.. +..+.+.|..+.+..+.. ++
T Consensus 54 v~~L~~~~~~~lNlE~a~t~em~~i-a~~~kP~~vtL-VPEkr-~E~T--TegGld--v~~~~~~l~~~i~~l~~~--gI 124 (234)
T cd00003 54 VRLLRELVRTELNLEMAPTEEMLEI-ALEVKPHQVTL-VPEKR-EELT--TEGGLD--VAGQAEKLKPIIERLKDA--GI 124 (234)
T ss_pred HHHHHHHcCCCEEeccCCCHHHHHH-HHHCCCCEEEE-CCCCC-CCcc--CCccch--hhcCHHHHHHHHHHHHHC--CC
Confidence 3344444444568888888887643 33356766554 55444 3433 255654 456777777665543322 33
Q ss_pred EEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCC--CCHHHHHHHHHHHHHHHHHHHHcCCC
Q 015304 148 RIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAA--TKFAAYRGAIAAAKAVFETAARLGNN 225 (409)
Q Consensus 148 Rv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~--~~~~~~~~~i~~~~~~~~~~~~~g~~ 225 (409)
||+.-.+ ++ .+-++.+++.|...+=| |.|... .+.......++++....+.+.++|+
T Consensus 125 ~VSLFiD----------------Pd--~~qi~~A~~~GAd~VEL--hTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL- 183 (234)
T cd00003 125 RVSLFID----------------PD--PEQIEAAKEVGADRVEL--HTGPYANAYDKAEREAELERIAKAAKLARELGL- 183 (234)
T ss_pred EEEEEeC----------------CC--HHHHHHHHHhCcCEEEE--echhhhcCCCchhHHHHHHHHHHHHHHHHHcCC-
Confidence 4443111 11 22234445556555444 555432 2223334457777777777888887
Q ss_pred CCcEEeecCCCCc
Q 015304 226 KMRVLDIGGGFSF 238 (409)
Q Consensus 226 ~~~~ldiGGG~~~ 238 (409)
-+|-|-|+-.
T Consensus 184 ---~VnAGHgLny 193 (234)
T cd00003 184 ---GVNAGHGLNY 193 (234)
T ss_pred ---EEecCCCCCH
Confidence 4688888754
No 294
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=26.11 E-value=4.5e+02 Score=23.22 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhC----C-CcceEE-ecCcCCcHHHHHHHHHcCCcEEE---
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKL----P-MIHPHY-AVKCNPEPALLEALAALGSNFDC--- 83 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~----~-~~~i~y-avKan~~~~vl~~l~~~G~g~~v--- 83 (409)
..|++.|+.+|.. ... -.+++|+......+++..+.+ . +-++.+ ..|--....|-+.+...|..+-.
T Consensus 13 ~~wnp~m~~yiyg---~r~-~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw 88 (193)
T cd01425 13 RRWNPKMKPYIYG---ERN-GIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYVNGRW 88 (193)
T ss_pred CCCCccchhheec---ccC-CeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeeecCee
Confidence 3456677777763 335 688999998766665554322 2 333443 33332233444444445653321
Q ss_pred -----cCHHHHHH-------H------------HhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEE
Q 015304 84 -----ASRSEIEA-------V------------LALGVSPDRIIYANPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 84 -----aS~~E~~~-------a------------~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~ 125 (409)
....+... . +..-..|+-|++.+|.+...-+++|...|+.++
T Consensus 89 ~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I 154 (193)
T cd01425 89 LGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVI 154 (193)
T ss_pred cCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEE
Confidence 22222211 0 012235788888899888888999999998755
No 295
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.07 E-value=4.9e+02 Score=23.51 Aligned_cols=84 Identities=6% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcceEEecCcC---------------CcHHHHHHHHHcCC-cEEEcCH-----------HHHHHHHhCC
Q 015304 44 TLYNQMISKLPMIHPHYAVKCN---------------PEPALLEALAALGS-NFDCASR-----------SEIEAVLALG 96 (409)
Q Consensus 44 ~n~~~~~~~~~~~~i~yavKan---------------~~~~vl~~l~~~G~-g~~vaS~-----------~E~~~a~~~G 96 (409)
+.+.++.+.++.-++..++-+. ...+.++.+.+.|+ .+-+.+. .-++.+.+.-
T Consensus 113 ~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~ 192 (241)
T PRK13585 113 EIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV 192 (241)
T ss_pred HHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 97 VSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 97 ~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
.-+++..|...+.++++.+.+.|+.-+.+.+
T Consensus 193 --~iPvia~GGI~~~~di~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 193 --DIPVIASGGVTTLDDLRALKEAGAAGVVVGS 223 (241)
T ss_pred --CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEH
No 296
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.81 E-value=5.2e+02 Score=25.03 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=27.7
Q ss_pred HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhHC
Q 015304 89 IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL-TTFDSVEELHKIRKWH 140 (409)
Q Consensus 89 ~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~-~~vds~~el~~i~~~~ 140 (409)
++.+++.++ .-+++.+. . +..++.+.+.|+.+ ..+-|.+++.+..+..
T Consensus 75 l~vi~e~~v--~~V~~~~G-~-P~~~~~lk~~Gi~v~~~v~s~~~A~~a~~~G 123 (320)
T cd04743 75 LAVVRAIKP--TFALIAGG-R-PDQARALEAIGISTYLHVPSPGLLKQFLENG 123 (320)
T ss_pred HHHHHhcCC--cEEEEcCC-C-hHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 444555553 34444443 2 23466666777763 3677888877766654
No 297
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.75 E-value=1.3e+02 Score=28.24 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=0.0
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
++++|.|.+|+..+.++|. +++..+| .++++++.+++
T Consensus 185 Igvev~s~eea~~A~~~ga---DyI~ld~-~~~e~l~~~~~ 221 (268)
T cd01572 185 IEVEVETLEQLKEALEAGA---DIIMLDN-MSPEELREAVA 221 (268)
T ss_pred EEEEECCHHHHHHHHHcCC---CEEEECC-cCHHHHHHHHH
No 298
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=25.71 E-value=1.6e+02 Score=27.00 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHH
Q 015304 87 SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEE 132 (409)
Q Consensus 87 ~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~e 132 (409)
.|+..+.+.-. .-++++.|...+.+..+.+++.|...+++.+.=|
T Consensus 171 ~~v~~~~~~~~-~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ie 215 (230)
T PF01884_consen 171 EEVIAAVKKLS-DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIE 215 (230)
T ss_dssp HHHHHHHHHSS-SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHH
T ss_pred HHHHHHHHhcC-CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEE
Confidence 67776666543 4689999999999999999999998788877533
No 299
>PRK05474 xylose isomerase; Provisional
Probab=25.65 E-value=3.3e+02 Score=27.55 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCC----HHHHHHHHHHHHHhhCCCCCCCCCCcEEE
Q 015304 199 ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKS----FQEAASIIKEALHAYFPNELLPGSSLRVI 274 (409)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~----~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 274 (409)
..|++.+..++.++++.++..+++|- .. ++==||-=|..|.-..+ ++.+++.++. +.+|..+-|+ +.++.
T Consensus 155 npd~~Vra~A~~qvk~alD~~~eLGg-e~-yV~WgGREGye~~~ntD~~~e~d~~~~~l~~-v~dYa~~iGf---~~~f~ 228 (437)
T PRK05474 155 NPDPDVFAYAAAQVKTALDATKRLGG-EN-YVFWGGREGYETLLNTDLKREREQLARFLQM-VVDYKHKIGF---KGTFL 228 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCC-Ce-EEECCCcccccchhhcCHHHHHHHHHHHHHH-HHHHhhhcCC---CceEE
Confidence 45778888889999999999999985 32 33335532222222223 3445555553 3345433211 12677
Q ss_pred EcCC
Q 015304 275 SEPG 278 (409)
Q Consensus 275 ~EpG 278 (409)
+||=
T Consensus 229 IEPK 232 (437)
T PRK05474 229 IEPK 232 (437)
T ss_pred eccC
Confidence 7763
No 300
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=25.65 E-value=1.2e+02 Score=27.08 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=55.8
Q ss_pred eccccHHHHHHHHHhhcCCCCCccEEEE--eHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHH
Q 015304 10 VTKEELTEFVRSTILKRQEFDEVPFYIL--DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRS 87 (409)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~t~P~~v~--d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~ 87 (409)
..-++..++++..+.. |= +...+ +-..-.+.++++++.+|+..+-. =+=-+.+-++...++|+.|-|+--.
T Consensus 17 ~~~~~a~~~~~al~~g----Gi-~~iEiT~~t~~a~~~I~~l~~~~p~~~vGA--GTV~~~e~a~~a~~aGA~FivSP~~ 89 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEG----GI-RAIEITLRTPNALEAIEALRKEFPDLLVGA--GTVLTAEQAEAAIAAGAQFIVSPGF 89 (196)
T ss_dssp SSGGGHHHHHHHHHHT----T---EEEEETTSTTHHHHHHHHHHHHTTSEEEE--ES--SHHHHHHHHHHT-SEEEESS-
T ss_pred CCHHHHHHHHHHHHHC----CC-CEEEEecCCccHHHHHHHHHHHCCCCeeEE--EeccCHHHHHHHHHcCCCEEECCCC
Confidence 3345555665555542 22 33332 22234456777777788644432 2333566777788888887776432
Q ss_pred ---HHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEE
Q 015304 88 ---EIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 88 ---E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~ 125 (409)
=++.+++.|+ .++-| +.|+.|+..|.++|...+
T Consensus 90 ~~~v~~~~~~~~i----~~iPG-~~TptEi~~A~~~G~~~v 125 (196)
T PF01081_consen 90 DPEVIEYAREYGI----PYIPG-VMTPTEIMQALEAGADIV 125 (196)
T ss_dssp -HHHHHHHHHHTS----EEEEE-ESSHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHcCC----cccCC-cCCHHHHHHHHHCCCCEE
Confidence 2334455543 23334 468888888888887643
No 301
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=25.65 E-value=3.2e+02 Score=27.89 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=60.3
Q ss_pred eHHHHHHHHHHHHHh----CC---CcceEEecCcCC-----cHHHHHHHHH-cCC--cEEEcCHHHHHHHHhCCCCCCcE
Q 015304 38 DLGVVVTLYNQMISK----LP---MIHPHYAVKCNP-----EPALLEALAA-LGS--NFDCASRSEIEAVLALGVSPDRI 102 (409)
Q Consensus 38 d~~~l~~n~~~~~~~----~~---~~~i~yavKan~-----~~~vl~~l~~-~G~--g~~vaS~~E~~~a~~~G~~~~~I 102 (409)
+.+.+.++++.+.+. .. +.. +-+++..+ ..++++.+.+ .++ .+|..+..+++.++++|.+...+
T Consensus 103 ~~e~i~~r~~~~~~~~~~rvG~~~~AD-~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~pl 181 (450)
T PRK04165 103 DDEEIDARLKKINNFQFERVGEILKLD-MVALRNASGDPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKPL 181 (450)
T ss_pred ChHHHHHHHHHhhcchHhhhcccccCC-EEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCce
Confidence 457778888777321 01 011 12344433 3467777766 465 89999999999999999766667
Q ss_pred EEeCCCCC-HHHHHHHHHcCCcEEEecC--HHHHHHHHhHC
Q 015304 103 IYANPCKP-VSHIKYAANVGVNLTTFDS--VEELHKIRKWH 140 (409)
Q Consensus 103 i~~gp~k~-~~~i~~a~~~gv~~~~vds--~~el~~i~~~~ 140 (409)
+++-..-+ ++-.+.|.++|+. +++.+ ++.+..+.+..
T Consensus 182 I~Sat~dN~~~m~~la~~yg~p-vVv~~~dl~~L~~lv~~~ 221 (450)
T PRK04165 182 LYAATKENYEEMAELAKEYNCP-LVVKAPNLEELKELVEKL 221 (450)
T ss_pred EEecCcchHHHHHHHHHHcCCc-EEEEchhHHHHHHHHHHH
Confidence 76644211 3344556788886 44444 44555544433
No 302
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=25.61 E-value=3.6e+02 Score=23.77 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHcCCcEE--Ee-------cCHHHHHHHHhHCCC--CeEEEEEe
Q 015304 109 KPVSHIKYAANVGVNLT--TF-------DSVEELHKIRKWHPK--CDLLIRIK 150 (409)
Q Consensus 109 k~~~~i~~a~~~gv~~~--~v-------ds~~el~~i~~~~~~--~~v~lRv~ 150 (409)
++.++++.|.+.|+..+ .+ =|.+++..|.+..+. ..+++=+|
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn 59 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVN 59 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeC
Confidence 45566666666665432 11 135666666666554 45555443
No 303
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=25.60 E-value=5.1e+02 Score=24.95 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=22.5
Q ss_pred cCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHH
Q 015304 84 ASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI 136 (409)
Q Consensus 84 aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i 136 (409)
.+...++.+++.|.+ -..++=+ ++++++.+++.|+.-+.-|..+.+..+
T Consensus 233 l~~~~v~~~~~~G~~--v~vWTVN--d~~~~~~l~~~GVDgIiTD~P~~l~~~ 281 (315)
T cd08609 233 LSALEIKELRKDNVS--VNLWVVN--EPWLFSLLWCSGVSSVTTNACQLLKDM 281 (315)
T ss_pred CCHHHHHHHHHCCCE--EEEECCC--CHHHHHHHHhcCCCEEEcCCHHHHHHh
Confidence 344445555555542 2223222 345555555555544444555444444
No 304
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=25.45 E-value=4.1e+02 Score=24.72 Aligned_cols=72 Identities=21% Similarity=0.207 Sum_probs=44.5
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEeC----CCC-CHHHHHHHHHc---CCcEE---EecCHHHH
Q 015304 67 EPALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYAN----PCK-PVSHIKYAANV---GVNLT---TFDSVEEL 133 (409)
Q Consensus 67 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~g----p~k-~~~~i~~a~~~---gv~~~---~vds~~el 133 (409)
...+++...+.|. =+||.+..|++.+.++|. +-|-+++ ... +.+....+.+. ++..+ -+.+.+++
T Consensus 149 l~~li~~a~~lGl~~lvevh~~~E~~~A~~~ga--diIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~ 226 (260)
T PRK00278 149 LKELLDYAHSLGLDVLVEVHDEEELERALKLGA--PLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDL 226 (260)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCC--CEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHH
Confidence 4567777777887 578999999999999985 3444554 111 12233333332 22223 24578888
Q ss_pred HHHHhHC
Q 015304 134 HKIRKWH 140 (409)
Q Consensus 134 ~~i~~~~ 140 (409)
..+.+..
T Consensus 227 ~~~~~~G 233 (260)
T PRK00278 227 KRLAKAG 233 (260)
T ss_pred HHHHHcC
Confidence 8887663
No 305
>PRK07094 biotin synthase; Provisional
Probab=25.42 E-value=4.9e+02 Score=24.82 Aligned_cols=40 Identities=5% Similarity=-0.012 Sum_probs=21.3
Q ss_pred eHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC
Q 015304 38 DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS 79 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~ 79 (409)
+.+.+.+-++.+++. ++..+....-. ...+.++.|+++|+
T Consensus 101 ~~~~l~~l~~~i~~~-~~l~i~~~~g~-~~~e~l~~Lk~aG~ 140 (323)
T PRK07094 101 TDEKIADIIKEIKKE-LDVAITLSLGE-RSYEEYKAWKEAGA 140 (323)
T ss_pred CHHHHHHHHHHHHcc-CCceEEEecCC-CCHHHHHHHHHcCC
Confidence 445566666666654 34444433321 24566777777764
No 306
>PRK09389 (R)-citramalate synthase; Provisional
Probab=25.39 E-value=7.6e+02 Score=25.45 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAA 212 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~ 212 (409)
++-+.++++.+.+.+..-..|.=-.|. ..+..+.+.++.+
T Consensus 142 ~~~l~~~~~~~~~~Ga~~i~l~DTvG~--~~P~~~~~lv~~l 181 (488)
T PRK09389 142 LDFLKELYKAGIEAGADRICFCDTVGI--LTPEKTYELFKRL 181 (488)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCC--cCHHHHHHHHHHH
Confidence 566777777777777666555444443 3455554444433
No 307
>PRK05926 hypothetical protein; Provisional
Probab=25.39 E-value=4.7e+02 Score=25.89 Aligned_cols=21 Identities=19% Similarity=0.448 Sum_probs=12.2
Q ss_pred eHHHHHHHHHHHHHhCCCcce
Q 015304 38 DLGVVVTLYNQMISKLPMIHP 58 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i 58 (409)
+.+.+.+-++.+++.+|++++
T Consensus 129 ~~e~~~e~i~~Ik~~~p~i~i 149 (370)
T PRK05926 129 NLAYYEELFSKIKQNFPDLHI 149 (370)
T ss_pred CHHHHHHHHHHHHHhCCCeeE
Confidence 445556666666666665443
No 308
>PRK00915 2-isopropylmalate synthase; Validated
Probab=25.30 E-value=7.8e+02 Score=25.53 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHHcCCcEEEcC-----HHHHHHHH----hCC
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAALGSNFDCAS-----RSEIEAVL----ALG 96 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS-----~~E~~~a~----~~G 96 (409)
+...+ |-.-++.+.-.+-++.+-+. ++-+++-|..-+......++.+.+.+-+..++. ..+++.+. .+|
T Consensus 14 DG~Q~-~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 14 DGEQS-PGASLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred cCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCC
Q ss_pred CCCCcEEEeCCCCCH------------------HHHHHHHHcCCcEEEecC-------HHHHHHHHhHCCCCeEEEEEec
Q 015304 97 VSPDRIIYANPCKPV------------------SHIKYAANVGVNLTTFDS-------VEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 97 ~~~~~Ii~~gp~k~~------------------~~i~~a~~~gv~~~~vds-------~~el~~i~~~~~~~~v~lRv~~ 151 (409)
. .+|.+..+.-+. +.+++|.++|.. +.++. .+.+..+.+.+.+.. .-+|+.
T Consensus 93 ~--~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~f~~ed~~r~d~~~l~~~~~~~~~~G-a~~i~l 168 (513)
T PRK00915 93 A--PRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD-VEFSAEDATRTDLDFLCRVVEAAIDAG-ATTINI 168 (513)
T ss_pred C--CEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeCCCCCCCHHHHHHHHHHHHHcC-CCEEEE
Q ss_pred CCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCC----eEEEEEEe
Q 015304 152 PDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGL----SVVGVAFH 194 (409)
Q Consensus 152 ~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l----~l~Glh~H 194 (409)
.+-.| +.. |+++.++++.+++.-- -..|+|+|
T Consensus 169 ~DTvG---------~~~--P~~~~~~i~~l~~~~~~~~~v~l~~H~H 204 (513)
T PRK00915 169 PDTVG---------YTT--PEEFGELIKTLRERVPNIDKAIISVHCH 204 (513)
T ss_pred ccCCC---------CCC--HHHHHHHHHHHHHhCCCcccceEEEEec
No 309
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=25.25 E-value=7.3e+02 Score=25.16 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCc--HHHHHHHHHcCCcEEEcCHHHHH
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPE--PALLEALAALGSNFDCASRSEIE 90 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~--~~vl~~l~~~G~g~~vaS~~E~~ 90 (409)
..+.++++++..+....+..-.+.=+.+...+-+..+-+.....++..+ |+... ..+...|.+.|..+--..++|..
T Consensus 47 ~~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~-kS~~~eeigl~~~L~~~g~~~~etdlge~i 125 (432)
T TIGR00273 47 ENLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKS-KSMVSEEIGLNEVLEKIGIEVWETDLGELI 125 (432)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEc-CchHHHHhCCHHHHHhCCCeeeeCccHHHH
Confidence 3456666666666544444144444555555555555444333333222 33332 33456666667654445677764
Q ss_pred HHHhCCCCCCcEEEeCCCCCHHHHHHHHHc--CCcEEEecCHHHHHHHHh-----HCCCCeEEE
Q 015304 91 AVLALGVSPDRIIYANPCKPVSHIKYAANV--GVNLTTFDSVEELHKIRK-----WHPKCDLLI 147 (409)
Q Consensus 91 ~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~--gv~~~~vds~~el~~i~~-----~~~~~~v~l 147 (409)
++-+|-+|+.|+.-.-.++.+++...+.. |.. .-++.++|-...+ .+..++++|
T Consensus 126 -~ql~~~~pshiv~Paih~~r~~i~~~f~~~~~~~--~~~~~~~l~~~~r~~lR~~~~~advgi 186 (432)
T TIGR00273 126 -LQLDGDPPSHIVVPALHKNRQQIGEILKERLGYE--GEESPEVLAREARKFMREKFLSADIGI 186 (432)
T ss_pred -hhhccCCCceeeeccccCCHHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 34456788899888888999999888653 332 2245666544332 233455655
No 310
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.08 E-value=5.1e+02 Score=23.35 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=85.5
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEE--EeHHHHHHHHHHHHHhCCCc-ceEEecCcCCcHHHHHHHHHcCCcEEEcC---H
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYI--LDLGVVVTLYNQMISKLPMI-HPHYAVKCNPEPALLEALAALGSNFDCAS---R 86 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v--~d~~~l~~n~~~~~~~~~~~-~i~yavKan~~~~vl~~l~~~G~g~~vaS---~ 86 (409)
++..++++..+. .|= +++. ++-..-.+.++++++.+++- .+.--.=+=-+++-++...++|+.|-|+- .
T Consensus 25 ~~a~~~~~al~~----~Gi-~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~ 99 (213)
T PRK06552 25 EEALKISLAVIK----GGI-KAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNR 99 (213)
T ss_pred HHHHHHHHHHHH----CCC-CEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCH
Confidence 444444444443 333 4444 34444566788888877521 23333334446777888999999988753 3
Q ss_pred HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEe---c--CHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCC
Q 015304 87 SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF---D--SVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPL 161 (409)
Q Consensus 87 ~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~v---d--s~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~ 161 (409)
+=++.+++.|+ .+...+.+++|+..|.+.|+..+-+ + ..+.+..+....+. +++-+ +
T Consensus 100 ~v~~~~~~~~i-----~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~----ip~~a---------t 161 (213)
T PRK06552 100 ETAKICNLYQI-----PYLPGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQ----VNVMV---------T 161 (213)
T ss_pred HHHHHHHHcCC-----CEECCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCC----CEEEE---------E
Confidence 44455666664 3334447899999999999876555 2 34555555544443 23333 1
Q ss_pred CCCcCCCCCcccHHHHHHHHHHcCCeEEEEE
Q 015304 162 DSKYGVDHHPQEIVPLLEAAEASGLSVVGVA 192 (409)
Q Consensus 162 ~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh 192 (409)
=|++ .+.+.+.++ .+....++-
T Consensus 162 ---GGI~--~~N~~~~l~----aGa~~vavg 183 (213)
T PRK06552 162 ---GGVN--LDNVKDWFA----AGADAVGIG 183 (213)
T ss_pred ---CCCC--HHHHHHHHH----CCCcEEEEc
Confidence 1777 666665543 355555553
No 311
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=24.68 E-value=59 Score=23.74 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=15.5
Q ss_pred CCC-CCCCCCEEEEcCCCcccc
Q 015304 365 KLP-ELEVTDWLVFSEMGAYTR 385 (409)
Q Consensus 365 ~lp-~l~~GD~l~~~~~GAY~~ 385 (409)
.|| ..++||+|.+.+-|.|..
T Consensus 29 ~LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 29 RLPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred HCCCCCCcccEEEECCCceEEE
Confidence 467 799999998855555543
No 312
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.32 E-value=6.1e+02 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=29.6
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
++++|.|.+|+..+.++|. + ++...+ .++++++.+++
T Consensus 192 I~VEv~tleea~eA~~~ga--D-~I~LD~-~~~e~l~~~v~ 228 (277)
T PRK05742 192 VEVEVESLDELRQALAAGA--D-IVMLDE-LSLDDMREAVR 228 (277)
T ss_pred EEEEeCCHHHHHHHHHcCC--C-EEEECC-CCHHHHHHHHH
Confidence 4999999999999999985 4 444455 58899998876
No 313
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=24.32 E-value=3e+02 Score=25.72 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=20.5
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCcEE
Q 015304 98 SPDRIIYANPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 98 ~~~~Ii~~gp~k~~~~i~~a~~~gv~~~ 125 (409)
.|+-|++..|.+....+++|...|+.++
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiI 184 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVV 184 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEE
Confidence 3577777788777777888888887644
No 314
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.26 E-value=6.3e+02 Score=24.13 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=29.7
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
+-+||.|++|++.+.++|. +.|++.+ .++++++.+++
T Consensus 200 IeVEv~tleea~~a~~aga--DiImLDn--mspe~l~~av~ 236 (290)
T PRK06559 200 VEVEVESLAAAEEAAAAGA--DIIMLDN--MSLEQIEQAIT 236 (290)
T ss_pred EEEECCCHHHHHHHHHcCC--CEEEECC--CCHHHHHHHHH
Confidence 4789999999999999996 4565555 47899999876
No 315
>PRK06852 aldolase; Validated
Probab=24.01 E-value=6.5e+02 Score=24.18 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCC--CCCCCcCCCCCcccHHHHHHHHHH--cCC
Q 015304 111 VSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKH--PLDSKYGVDHHPQEIVPLLEAAEA--SGL 186 (409)
Q Consensus 111 ~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~--~~~srfGi~~~~~~~~~~~~~~~~--~~l 186 (409)
..-++.+.+.|+.. .+-+.--+++.....++..+.||+|.......+. +..+ .. ...+++.++.-.. .|.
T Consensus 62 ~~~i~~~~~~g~da-v~~~~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~---~l--~~sVeeAvrlG~~~~~~A 135 (304)
T PRK06852 62 EHLFRIASKAKIGV-FATQLGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLS---RQ--LLDVEQVVEFKENSGLNI 135 (304)
T ss_pred HHHHHHHHhcCCCE-EEeCHHHHHhhccccCCCcEEEEECCCCCcCCcccCCccc---cc--eecHHHHHhcCCccCCCc
Confidence 34667777878874 4556777766554555677999998521111000 0001 11 1223333332111 125
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Q 015304 187 SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNN 225 (409)
Q Consensus 187 ~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~ 225 (409)
.-+++|..+||.. + .++++.+.++.+.++++|+|
T Consensus 136 dAV~v~v~~Gs~~---E--~~ml~~l~~v~~ea~~~GlP 169 (304)
T PRK06852 136 LGVGYTIYLGSEY---E--SEMLSEAAQIIYEAHKHGLI 169 (304)
T ss_pred eEEEEEEecCCHH---H--HHHHHHHHHHHHHHHHhCCc
Confidence 5667777777531 2 36777888888999999983
No 316
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.93 E-value=8.1e+02 Score=25.22 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=53.8
Q ss_pred cEEEEeHH-----HHHHHHHHHHHhCCCcceEEecCcC-CcHHHHHHHHHcCC-cEE----E----cCH-----------
Q 015304 33 PFYILDLG-----VVVTLYNQMISKLPMIHPHYAVKCN-PEPALLEALAALGS-NFD----C----ASR----------- 86 (409)
Q Consensus 33 P~~v~d~~-----~l~~n~~~~~~~~~~~~i~yavKan-~~~~vl~~l~~~G~-g~~----v----aS~----------- 86 (409)
...++|.. .+.+-++++|+.+|+..+.. -| ...+-++.|.++|+ .+. . .+.
T Consensus 241 d~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~a---gnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~ 317 (479)
T PRK07807 241 DVLVVDTAHGHQEKMLEALRAVRALDPGVPIVA---GNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFS 317 (479)
T ss_pred CEEEEeccCCccHHHHHHHHHHHHHCCCCeEEe---eccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHH
Confidence 44555543 36667778888888765543 12 34556677777775 333 1 111
Q ss_pred --HHHHH-HHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 87 --SEIEA-VLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 87 --~E~~~-a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
.|+.. +++.|+ +++-.|..+++.++..|+..|...+.+.++
T Consensus 318 av~~~~~~~~~~~~---~via~ggi~~~~~~~~al~~ga~~v~~g~~ 361 (479)
T PRK07807 318 AVLECAAAARELGA---HVWADGGVRHPRDVALALAAGASNVMIGSW 361 (479)
T ss_pred HHHHHHHHHHhcCC---cEEecCCCCCHHHHHHHHHcCCCeeeccHh
Confidence 11221 223343 577788888888888888888765566544
No 317
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=23.81 E-value=2.7e+02 Score=27.65 Aligned_cols=75 Identities=23% Similarity=0.143 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHhhcC-C-------CCCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC-
Q 015304 13 EELTEFVRSTILKRQ-E-------FDEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS- 79 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~-~-------~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~- 79 (409)
++++++|+.++..+. . -|. |+ +....+.+.+..+++.+. +.++.+++=+|. +.++++.+++.+.
T Consensus 40 etle~~i~~~~~~~~~~~v~~~w~GGE-Pl--L~~~~f~~~~~~l~~k~~~~~~i~~siqTNg~LL~~e~~e~l~~~~~~ 116 (378)
T COG0641 40 ETLEEYVRQYIAASNGDKVTFTWQGGE-PL--LAGLDFYRKAVALQQKYANGKTISNALQTNGTLLNDEWAEFLAEHDFL 116 (378)
T ss_pred HHHHHHHHHHHhhCCCCeeEEEEECCc-cc--cchHHHHHHHHHHHHHHhcCCeeEEEEEEcccccCHHHHHHHHhcCce
Confidence 788899999998762 2 245 66 444455555566555554 788999999998 7889999988886
Q ss_pred -cEEEcCHHHHH
Q 015304 80 -NFDCASRSEIE 90 (409)
Q Consensus 80 -g~~vaS~~E~~ 90 (409)
|+-.-.+.|+.
T Consensus 117 IgISiDGp~eih 128 (378)
T COG0641 117 IGISIDGPEEIH 128 (378)
T ss_pred EEEeccCchHhc
Confidence 44444555554
No 318
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.64 E-value=72 Score=28.91 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=43.0
Q ss_pred HHHHHHHcCCcE---E---EecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCC
Q 015304 113 HIKYAANVGVNL---T---TFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGL 186 (409)
Q Consensus 113 ~i~~a~~~gv~~---~---~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l 186 (409)
.+..+.+.|... + -..+++|+..+.+.+.+..+ .+.| | =||+ .+.+.++++.+...|+
T Consensus 140 Aiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~--~lEP---------T---GGId--l~Nf~~I~~i~ldaGv 203 (236)
T TIGR03581 140 AIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF--YLEP---------T---GGID--LDNFEEIVQIALDAGV 203 (236)
T ss_pred HHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC--ccCC---------C---CCcc--HHhHHHHHHHHHHcCC
Confidence 344455677642 2 24678888888776544333 3443 1 2888 8999999998888888
Q ss_pred eEEEEEEe
Q 015304 187 SVVGVAFH 194 (409)
Q Consensus 187 ~l~Glh~H 194 (409)
+.+--|.+
T Consensus 204 ~kviPHIY 211 (236)
T TIGR03581 204 EKVIPHVY 211 (236)
T ss_pred Ceeccccc
Confidence 77655544
No 319
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=23.61 E-value=6.2e+02 Score=23.77 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.6
Q ss_pred CcEEEeCCCCCHHHHHHHHHcCCcEEEecC---------HHHHHHHHhHCCCCeEEEEEe
Q 015304 100 DRIIYANPCKPVSHIKYAANVGVNLTTFDS---------VEELHKIRKWHPKCDLLIRIK 150 (409)
Q Consensus 100 ~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds---------~~el~~i~~~~~~~~v~lRv~ 150 (409)
-.|-+.|...+ ++++.+++.|+..+++.| .+-++.+.+.+...++.+-|+
T Consensus 84 ~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD 142 (262)
T PLN02446 84 GGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLS 142 (262)
T ss_pred CCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 46888888775 888888999987777765 556666666553344555444
No 320
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=23.59 E-value=5.2e+02 Score=22.88 Aligned_cols=85 Identities=6% Similarity=-0.062 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCC--cceEEecCcCC---cHHHHHHHHHcCC-cEEEc--------CHHHHHHHHhCCCCCCcEEEe
Q 015304 40 GVVVTLYNQMISKLPM--IHPHYAVKCNP---EPALLEALAALGS-NFDCA--------SRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 40 ~~l~~n~~~~~~~~~~--~~i~yavKan~---~~~vl~~l~~~G~-g~~va--------S~~E~~~a~~~G~~~~~Ii~~ 105 (409)
+.+.+.+.++++...+ .++.+..-... ....++...++|+ .+.++ |++.++..++..-.+-.|...
T Consensus 101 ~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~a 180 (203)
T cd00959 101 EAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAA 180 (203)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEe
Confidence 3455666666665543 22322222122 3455667777887 44444 235545444432134578888
Q ss_pred CCCCCHHHHHHHHHcCCcE
Q 015304 106 NPCKPVSHIKYAANVGVNL 124 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~ 124 (409)
|..|+.++....++.|..+
T Consensus 181 GGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 181 GGIRTLEDALAMIEAGATR 199 (203)
T ss_pred CCCCCHHHHHHHHHhChhh
Confidence 8889888888888877753
No 321
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=23.56 E-value=1.5e+02 Score=27.08 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=47.5
Q ss_pred CcceEEecCcCCc----HHHHH--HHHH--cCC---cEEEcC-------HHHHHHHHhCCCCCCcEEEeCCCCCHHHHHH
Q 015304 55 MIHPHYAVKCNPE----PALLE--ALAA--LGS---NFDCAS-------RSEIEAVLALGVSPDRIIYANPCKPVSHIKY 116 (409)
Q Consensus 55 ~~~i~yavKan~~----~~vl~--~l~~--~G~---g~~vaS-------~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~ 116 (409)
+.++.+..+|++. +.++. .+++ .|. ++|.+| .+-++.+++. .+.-+|.+.|..++.++++.
T Consensus 118 ~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~-~~~~pl~vGGGIrs~e~a~~ 196 (223)
T TIGR01768 118 GGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVKKV-LDKARLFVGGGIRSVEKARE 196 (223)
T ss_pred CcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHHHH-cCCCCEEEecCCCCHHHHHH
Confidence 4566777777763 33333 2222 242 566553 2335555553 21257899999999999999
Q ss_pred HHHcCCcEEEecCH
Q 015304 117 AANVGVNLTTFDSV 130 (409)
Q Consensus 117 a~~~gv~~~~vds~ 130 (409)
+++.|+..+++.|.
T Consensus 197 l~~aGAD~VVVGs~ 210 (223)
T TIGR01768 197 MAEAGADTIVTGNV 210 (223)
T ss_pred HHHcCCCEEEECcH
Confidence 99989877777774
No 322
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.55 E-value=2.3e+02 Score=26.20 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=50.8
Q ss_pred CCcCCCCCcccHHHHHHHHHHcCC--eEEEEEEe----eCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCC
Q 015304 163 SKYGVDHHPQEIVPLLEAAEASGL--SVVGVAFH----IGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGF 236 (409)
Q Consensus 163 srfGi~~~~~~~~~~~~~~~~~~l--~l~Glh~H----~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~ 236 (409)
+|+--+ .++..++.+.+.+.|+ .-..++.| +|| .|...-.++++.+.+.+.+++++|+ +.|-+.| +
T Consensus 47 aRLDWs--~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS--~D~~~r~~aleiM~KaI~LA~dLGI---RtIQLAG-Y 118 (287)
T COG3623 47 ARLDWS--KEERLALVNAIQETGVRIPSMCLSAHRRFPFGS--KDEATRQQALEIMEKAIQLAQDLGI---RTIQLAG-Y 118 (287)
T ss_pred HhcCCC--HHHHHHHHHHHHHhCCCccchhhhhhccCCCCC--CCHHHHHHHHHHHHHHHHHHHHhCc---eeEeecc-c
Confidence 344444 5677777777766654 44556666 455 3555556777888888888888887 5667665 5
Q ss_pred CcCCCC--CCCHHHHHHHHHHH
Q 015304 237 SFTNSN--TKSFQEAASIIKEA 256 (409)
Q Consensus 237 ~~~~~~--~~~~~~~~~~i~~~ 256 (409)
.+=|.+ +.+-+.+.+-++.+
T Consensus 119 DVYYE~~d~eT~~rFi~g~~~a 140 (287)
T COG3623 119 DVYYEEADEETRQRFIEGLKWA 140 (287)
T ss_pred eeeeccCCHHHHHHHHHHHHHH
Confidence 553332 12333444444433
No 323
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=23.52 E-value=4.2e+02 Score=26.01 Aligned_cols=50 Identities=26% Similarity=0.132 Sum_probs=26.0
Q ss_pred EcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHH
Q 015304 83 CASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI 136 (409)
Q Consensus 83 vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i 136 (409)
..+...++.+.++|++ -.+|+=. ++++++.+.+.||.-+.-|..+.+.++
T Consensus 210 ~lt~~~v~~~~~~Gl~--V~vWTVN--~~~~~~~l~~~GVdgIiTD~P~~l~~l 259 (351)
T cd08608 210 QASAQEIRDYSASNLS--VNLYTVN--EPWLYSLLWCSGVPSVTSDASHVLRKV 259 (351)
T ss_pred hcCHHHHHHHHHCCCE--EEEEecC--CHHHHHHHHHCCCCEEEECCHHHHHHh
Confidence 3455556666666652 2333322 345566666666654555666655544
No 324
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=23.44 E-value=7.6e+02 Score=26.81 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=42.4
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCC---------------------------CCCcEEEe-CCCCCHHHHHH
Q 015304 67 EPALLEALAALGS--NFDCASRSEIEAVLALGV---------------------------SPDRIIYA-NPCKPVSHIKY 116 (409)
Q Consensus 67 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~---------------------------~~~~Ii~~-gp~k~~~~i~~ 116 (409)
...+++...+.|. =+||-+..|++.++++|. |.+.++++ +..+++++++.
T Consensus 149 l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~ 228 (695)
T PRK13802 149 LKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVED 228 (695)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHH
Confidence 4667777777887 689999999999999862 22223333 55577788887
Q ss_pred HHHcCCcEEEe
Q 015304 117 AANVGVNLTTF 127 (409)
Q Consensus 117 a~~~gv~~~~v 127 (409)
+.+.|+.-+-|
T Consensus 229 l~~~G~davLI 239 (695)
T PRK13802 229 YARAGADAVLV 239 (695)
T ss_pred HHHCCCCEEEE
Confidence 77777653333
No 325
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=23.42 E-value=1.4e+02 Score=28.50 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred EEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 81 FDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 81 ~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
+||.|++|++.+.++|. +.|++.+- ++++++.+++
T Consensus 194 VEv~tleqa~ea~~aga--DiI~LDn~--~~e~l~~av~ 228 (284)
T PRK06096 194 VEADTPKEAIAALRAQP--DVLQLDKF--SPQQATEIAQ 228 (284)
T ss_pred EECCCHHHHHHHHHcCC--CEEEECCC--CHHHHHHHHH
No 326
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.37 E-value=7.2e+02 Score=24.45 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=55.7
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCCC---cceEEecCcCCcHHHHHHHHHcCC-cEEEcCH--------------HH
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLPM---IHPHYAVKCNPEPALLEALAALGS-NFDCASR--------------SE 88 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~~---~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~--------------~E 88 (409)
..+| .++..+.+-+.+-++++++.++. +++.--.--+.....++.+.++|+ .+.|-+. +-
T Consensus 116 g~yG--a~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~ 193 (358)
T KOG2335|consen 116 GGYG--AFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEA 193 (358)
T ss_pred CCcc--ceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHH
Confidence 3455 46777888888999999988862 222222333346778888888898 7777543 22
Q ss_pred HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH-cCC
Q 015304 89 IEAVLALGVSPDRIIYANPCKPVSHIKYAAN-VGV 122 (409)
Q Consensus 89 ~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~-~gv 122 (409)
+..+++. ++.=+++.+|...+.++...+++ .|+
T Consensus 194 i~~v~~~-~~~ipviaNGnI~~~~d~~~~~~~tG~ 227 (358)
T KOG2335|consen 194 IKAVREN-VPDIPVIANGNILSLEDVERCLKYTGA 227 (358)
T ss_pred HHHHHHh-CcCCcEEeeCCcCcHHHHHHHHHHhCC
Confidence 2222222 33235666666666666666665 444
No 327
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=23.28 E-value=2.2e+02 Score=26.61 Aligned_cols=73 Identities=14% Similarity=0.050 Sum_probs=43.1
Q ss_pred ceEEecCcCCcHHHHHHHHHcCCcEEEc-CHHHHHHHHhCCCCCCcEEEe-CCCCCHHHHHHHHHcCCcE-EEecC
Q 015304 57 HPHYAVKCNPEPALLEALAALGSNFDCA-SRSEIEAVLALGVSPDRIIYA-NPCKPVSHIKYAANVGVNL-TTFDS 129 (409)
Q Consensus 57 ~i~yavKan~~~~vl~~l~~~G~g~~va-S~~E~~~a~~~G~~~~~Ii~~-gp~k~~~~i~~a~~~gv~~-~~vds 129 (409)
+++..+=++..+.+.......-+.+-|- +.+=++.+.++|+++++|+.. ||.-...+.....++++.. ++=||
T Consensus 131 ~i~lttG~k~l~~f~~~~~~~~~~~RvLP~~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~S 206 (256)
T TIGR00715 131 RVFLTAGASWLSHFSLSQDEAVVFVRVLPYPQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKAS 206 (256)
T ss_pred cEEEecCcchHHHHhhccCCceEEEEECCCchhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCC
Confidence 6777777776666655322222344443 333466788999999888866 6654333444445788863 34455
No 328
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=23.25 E-value=6.2e+02 Score=23.61 Aligned_cols=30 Identities=7% Similarity=0.112 Sum_probs=19.3
Q ss_pred CHHHHHHHHHcCCc--EEEe--cCHHHHHHHHhH
Q 015304 110 PVSHIKYAANVGVN--LTTF--DSVEELHKIRKW 139 (409)
Q Consensus 110 ~~~~i~~a~~~gv~--~~~v--ds~~el~~i~~~ 139 (409)
+++.++.|.+.|.. ..++ ++.++++++.+.
T Consensus 239 ~~~~v~~~~~~Gl~v~vWTv~~n~~~~~~~l~~~ 272 (282)
T cd08605 239 NPTAVSLVKASGLELGTYGKLNNDAEAVERQADL 272 (282)
T ss_pred CcHHHHHHHHcCcEEEEeCCCCCCHHHHHHHHHc
Confidence 55667777777764 2345 677777777654
No 329
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=22.82 E-value=5.1e+02 Score=25.23 Aligned_cols=39 Identities=10% Similarity=0.275 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAI 209 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i 209 (409)
.+++.+.++.+++.++.-+.+.+=+|-...+.+.|.+.+
T Consensus 133 ~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l 171 (350)
T PRK08446 133 QKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEEL 171 (350)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHH
Confidence 566666666666666654455555554444455554443
No 330
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.73 E-value=1.9e+02 Score=27.40 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=41.9
Q ss_pred EEecCcC-CcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcE
Q 015304 59 HYAVKCN-PEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL 124 (409)
Q Consensus 59 ~yavKan-~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~ 124 (409)
.|..--- .||.+++.|.+.|+ .+ +.+..|+. +++.+++...+-+++..+.|.+.|+.+
T Consensus 32 iy~lG~iIHN~~Vv~~L~~~Gv~~~-v~~~~~v~-------~~~~ViirAHGv~~~~~~~~~~~gl~v 91 (280)
T TIGR00216 32 VYTLGPIVHNPQVVERLRERGVFFF-LEDLDEVA-------AGDTVIIRAHGVPPEVREELEKKGLEV 91 (280)
T ss_pred eEEecCCccCHHHHHHHHHCCCEEe-ecCcccCC-------CCCEEEEeCCCCCHHHHHHHHHCCCeE
Confidence 3554332 38999999999997 44 44554442 235788888888999999999999863
No 331
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=22.72 E-value=4.6e+02 Score=23.79 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCC-cEEEcCHHHHHHHHhC-----------CCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 68 PALLEALAALGS-NFDCASRSEIEAVLAL-----------GVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~~E~~~a~~~-----------G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
+.+++...+.|+ |+-+.+...++..++. ..+++++.. .| +.++++...+.|+.++.+|
T Consensus 36 ~~mA~Aa~~gGAvgiR~~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~I-Tp--tlkeVd~L~~~Ga~IIA~D 105 (229)
T COG3010 36 AAMALAAEQGGAVGIRIEGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRI-TP--TLKEVDALAEAGADIIAFD 105 (229)
T ss_pred HHHHHHHHhCCcceEeecchhhHHHHHhhCCCCeEEEEecCCCCCCcee-cc--cHHHHHHHHHCCCcEEEee
Confidence 455555556787 9999999999987764 123333322 22 3456666677777655444
No 332
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.66 E-value=6.2e+02 Score=23.42 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCC-cEEEcCH-----------HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHH-HcCCc
Q 015304 68 PALLEALAALGS-NFDCASR-----------SEIEAVLALGVSPDRIIYANPCKPVSHIKYAA-NVGVN 123 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~-~~gv~ 123 (409)
..+++.+.+.|+ .+-+.+. +-+..+.+. .+ -+++.+|...+.++++.++ +.|+.
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~-~~-ipvIasGGv~s~eD~~~l~~~~Gvd 221 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA-LK-IPLIALGGAGSLDDIVEAILNLGAD 221 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh-CC-CCEEEeCCCCCHHHHHHHHHHCCCC
Confidence 467777878887 3444432 233444443 22 4788888888888888887 57765
No 333
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=22.59 E-value=1.2e+02 Score=29.39 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=41.0
Q ss_pred CcCCcHHHHHHHHHcCC---cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHH----H-cCCcEEEecCHHHHH
Q 015304 63 KCNPEPALLEALAALGS---NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAA----N-VGVNLTTFDSVEELH 134 (409)
Q Consensus 63 Kan~~~~vl~~l~~~G~---g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~----~-~gv~~~~vds~~el~ 134 (409)
|+.-...++....+.|. .++.-...+...+.+.|++.+++++.-|. +.+++...+ + .++.+++|||+..+.
T Consensus 68 KTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~-~~eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 68 KTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPD-TGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCC-CHHHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 33333444444444442 45544444456788899999999988885 444333322 2 345667888876543
No 334
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.53 E-value=89 Score=25.40 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCcceEEecCcCCcHHHHH---HHHHc-CCcEEEcCHHHHHHHHhCCCCCCcE-EEeCCCCCHHHHHH
Q 015304 42 VVTLYNQMISKLPMIHPHYAVKCNPEPALLE---ALAAL-GSNFDCASRSEIEAVLALGVSPDRI-IYANPCKPVSHIKY 116 (409)
Q Consensus 42 l~~n~~~~~~~~~~~~i~yavKan~~~~vl~---~l~~~-G~g~~vaS~~E~~~a~~~G~~~~~I-i~~gp~k~~~~i~~ 116 (409)
+-+.+.+.-...++.++..++-.++++.+=+ .+... ..++.+. .+++.+.+. . +-+ -|+.|.-..+.+++
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~--~~l~~~~~~-~--DVvIDfT~p~~~~~~~~~ 86 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT--DDLEELLEE-A--DVVIDFTNPDAVYDNLEY 86 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB--S-HHHHTTH----SEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc--hhHHHhccc-C--CEEEEcCChHHhHHHHHH
Confidence 3344444444467788877777766322211 11111 1233333 333333333 2 333 47777666678899
Q ss_pred HHHcCCcEEEe----cCHHHHHHHHhHCCCCeEEE
Q 015304 117 AANVGVNLTTF----DSVEELHKIRKWHPKCDLLI 147 (409)
Q Consensus 117 a~~~gv~~~~v----ds~~el~~i~~~~~~~~v~l 147 (409)
++++|+. +++ -+.++++.|.+++++..+++
T Consensus 87 ~~~~g~~-~ViGTTG~~~~~~~~l~~~a~~~~vl~ 120 (124)
T PF01113_consen 87 ALKHGVP-LVIGTTGFSDEQIDELEELAKKIPVLI 120 (124)
T ss_dssp HHHHT-E-EEEE-SSSHHHHHHHHHHHTTTSEEEE
T ss_pred HHhCCCC-EEEECCCCCHHHHHHHHHHhccCCEEE
Confidence 9999997 445 46889999999887755543
No 335
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.45 E-value=1.6e+02 Score=28.10 Aligned_cols=115 Identities=12% Similarity=0.095 Sum_probs=63.0
Q ss_pred CcceEEecCcCCc-HHHHHHHHHcCC------c-EE-----------EcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHH
Q 015304 55 MIHPHYAVKCNPE-PALLEALAALGS------N-FD-----------CASRSEIEAVLALGVSPDRIIYANPCKPVSHIK 115 (409)
Q Consensus 55 ~~~i~yavKan~~-~~vl~~l~~~G~------g-~~-----------vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~ 115 (409)
+++++-.=|+-|. ..+.+.....|- + .| +.+..++....+.-.+..+|..-- -+.++..
T Consensus 136 ~~~i~~TRKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv--~tl~ea~ 213 (289)
T PRK07896 136 KAKIRDTRKTLPGLRALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEV--DSLEQLD 213 (289)
T ss_pred CeEEEecCCCCCcchHHHHHHHHhCCCccccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEc--CCHHHHH
Confidence 5677777788773 444455544431 2 11 224555443333323334555543 3678999
Q ss_pred HHHHcCCcEEEecCHH--HHHHHHhHC--CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEE
Q 015304 116 YAANVGVNLTTFDSVE--ELHKIRKWH--PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGV 191 (409)
Q Consensus 116 ~a~~~gv~~~~vds~~--el~~i~~~~--~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Gl 191 (409)
.|++.|+..+.+|+.+ +++...+.. ...++.+-++. |++ .+.+.+. ...|+.+..+
T Consensus 214 eal~~gaDiI~LDnm~~e~vk~av~~~~~~~~~v~ieaSG--------------GI~--~~ni~~y----A~tGvD~Is~ 273 (289)
T PRK07896 214 EVLAEGAELVLLDNFPVWQTQEAVQRRDARAPTVLLESSG--------------GLT--LDTAAAY----AETGVDYLAV 273 (289)
T ss_pred HHHHcCCCEEEeCCCCHHHHHHHHHHHhccCCCEEEEEEC--------------CCC--HHHHHHH----HhcCCCEEEe
Confidence 9999999888888754 444444331 12345554442 677 5555443 2346655544
No 336
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=22.33 E-value=9.2e+02 Score=25.31 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEeecCCCCcC
Q 015304 209 IAAAKAVFETAARLGNNKMRVLDIGGGFSFT 239 (409)
Q Consensus 209 i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~ 239 (409)
.+.|.+++++++++.+ .|++|-|+--.
T Consensus 355 Ye~FD~ileI~k~YDV----tlSLGDGLRPG 381 (607)
T PRK09284 355 YTHFEEICEIMAAYDV----SFSLGDGLRPG 381 (607)
T ss_pred HHHHHHHHHHHHHhCe----eeeccCCcCCC
Confidence 4667888999998865 57999998543
No 337
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=22.26 E-value=1.7e+02 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=11.0
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHcCCc
Q 015304 95 LGVSPDRIIYANPCKPVSHIKYAANVGVN 123 (409)
Q Consensus 95 ~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~ 123 (409)
.|++|++++|-|- +..+++.|.+.|+.
T Consensus 154 ~~~~p~~~l~vgD--~~~di~aA~~aG~~ 180 (199)
T PRK09456 154 EGFSAADAVFFDD--NADNIEAANALGIT 180 (199)
T ss_pred cCCChhHeEEeCC--CHHHHHHHHHcCCE
Confidence 3444444444443 22334444444443
No 338
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=22.18 E-value=1.3e+02 Score=24.90 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=18.0
Q ss_pred HHHHHHHHHHH-HHH--cCCCCCcEEeecCCCCc
Q 015304 208 AIAAAKAVFET-AAR--LGNNKMRVLDIGGGFSF 238 (409)
Q Consensus 208 ~i~~~~~~~~~-~~~--~g~~~~~~ldiGGG~~~ 238 (409)
+++++.++++. ++. ...+...++|+|+|-|.
T Consensus 5 Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~Gy 38 (141)
T PF13679_consen 5 EIERMAELIDSLCDSVGESKRCITVVDLGSGKGY 38 (141)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhH
Confidence 45555555543 222 11136789999999764
No 339
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.15 E-value=6.2e+02 Score=23.21 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcceEEec---------------------CcCCcHHHHHHHHHcCC-cEEEcCHH----------HHHH
Q 015304 44 TLYNQMISKLPMIHPHYAV---------------------KCNPEPALLEALAALGS-NFDCASRS----------EIEA 91 (409)
Q Consensus 44 ~n~~~~~~~~~~~~i~yav---------------------Kan~~~~vl~~l~~~G~-g~~vaS~~----------E~~~ 91 (409)
+.++++.+.++.-++..++ ........++.+.+.|+ .+-+.+.. |+..
T Consensus 111 ~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~ 190 (253)
T PRK02083 111 ELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTR 190 (253)
T ss_pred HHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHH
Q ss_pred HHhCCCCCCcEEEeCCCCCHHHHHHHHHc-CCcEEEecCH
Q 015304 92 VLALGVSPDRIIYANPCKPVSHIKYAANV-GVNLTTFDSV 130 (409)
Q Consensus 92 a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~-gv~~~~vds~ 130 (409)
....-.+ -+++.+|...+.+++..+++. |+.-+.+.+.
T Consensus 191 ~~~~~~~-ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 191 AVSDAVN-VPVIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHhhCC-CCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
No 340
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.09 E-value=1.2e+02 Score=26.70 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 68 PALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 68 ~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
+.+.+.+.+.=..+-+.|...++..++.|.++++|..+|+.|-
T Consensus 140 ~~~~r~~l~~f~~i~aqs~~da~r~~~lG~~~~~v~v~GnlKf 182 (186)
T PF04413_consen 140 PFLFRPLLSRFDRILAQSEADAERFRKLGAPPERVHVTGNLKF 182 (186)
T ss_dssp -HHHHHHGGG-SEEEESSHHHHHHHHTTT-S--SEEE---GGG
T ss_pred HHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcceEEEeCcchh
Confidence 4455555443347889999999999999999999999998763
No 341
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=21.97 E-value=6e+02 Score=24.27 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCC--CCcCCCCCCCHHHHHHHHHH
Q 015304 201 KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGG--FSFTNSNTKSFQEAASIIKE 255 (409)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG--~~~~~~~~~~~~~~~~~i~~ 255 (409)
+...-.++++.-.+++++.+.+|- +.-.+=+|-| ||.+..-...|+.|.+.++.
T Consensus 150 d~~tR~qAieHnlECveIg~~~GS-KaltvWvgDGsnfPGQ~nF~r~feRyl~sm~~ 205 (430)
T COG4952 150 DAATRRQAIEHNLECVEIGKALGS-KALTVWVGDGSNFPGQSNFTRAFERYLDSMKA 205 (430)
T ss_pred cHHHHHHHHHhhHHHHHHHHhhCc-ceEEEEeccCCCCCCchhHHHHHHHHHHHHHH
Confidence 334445778888889999999986 5544555555 44431111234555554443
No 342
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=21.89 E-value=2.1e+02 Score=26.48 Aligned_cols=74 Identities=27% Similarity=0.394 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHcC--CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCc--EEeecCCCCcCCCCCCCHH
Q 015304 172 QEIVPLLEAAEASG--LSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMR--VLDIGGGFSFTNSNTKSFQ 247 (409)
Q Consensus 172 ~~~~~~~~~~~~~~--l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~--~ldiGGG~~~~~~~~~~~~ 247 (409)
+...++++.+.+.+ +.-+|+++|+.....+...+ ...++.+.+.|. ++. -+|+..+ ++.+
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~-------~~~l~~~~~~g~-pi~iTE~dv~~~--------~~~~ 199 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEI-------RAALDRFASLGL-EIQITELDISGY--------PNPQ 199 (254)
T ss_pred HHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHH-------HHHHHHHHHcCC-ceEEEEeecCCC--------CcHH
Confidence 34566777776653 78899999987544344333 333444445565 443 3555443 1114
Q ss_pred HHHHHHHHHHHhhC
Q 015304 248 EAASIIKEALHAYF 261 (409)
Q Consensus 248 ~~~~~i~~~l~~~~ 261 (409)
.-++..+..+..++
T Consensus 200 ~qA~~~~~~l~~~~ 213 (254)
T smart00633 200 AQAADYEEVFKACL 213 (254)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666666665
No 343
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.81 E-value=5.7e+02 Score=25.30 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCC-cEEEc
Q 015304 68 PALLEALAALGS-NFDCA 84 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~va 84 (409)
..+++.|.+.|+ .++|+
T Consensus 255 ~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 255 LKAAKILEEAGYDALDVD 272 (382)
T ss_pred HHHHHHHHHhCCCEEEeC
Confidence 467888888887 66665
No 344
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=21.78 E-value=4.7e+02 Score=23.29 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCC-cEEEc--------CHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec----CHHHHH
Q 015304 68 PALLEALAALGS-NFDCA--------SRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD----SVEELH 134 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~va--------S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd----s~~el~ 134 (409)
..+++...+.|+ ++-|. +...++.+++. ++ -.|++.+...++++++.+.+.|+..+++. +.++++
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~-iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~ 111 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VS-LPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLK 111 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cC-CCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHH
Confidence 478888888898 78775 78888887775 22 35777776777789999999999755432 235555
Q ss_pred HHHhH
Q 015304 135 KIRKW 139 (409)
Q Consensus 135 ~i~~~ 139 (409)
.+.+.
T Consensus 112 ~~~~~ 116 (217)
T cd00331 112 ELYEL 116 (217)
T ss_pred HHHHH
Confidence 55443
No 345
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=21.77 E-value=3.2e+02 Score=24.57 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=37.6
Q ss_pred cHHHHHHHHHcCCcEEEcCHH--H-HH-HHHhCCCCCC-cEEEeC----CCCC-HHHHHHHH-HcCCc----EEEecCHH
Q 015304 67 EPALLEALAALGSNFDCASRS--E-IE-AVLALGVSPD-RIIYAN----PCKP-VSHIKYAA-NVGVN----LTTFDSVE 131 (409)
Q Consensus 67 ~~~vl~~l~~~G~g~~vaS~~--E-~~-~a~~~G~~~~-~Ii~~g----p~k~-~~~i~~a~-~~gv~----~~~vds~~ 131 (409)
...+++.|++.|....++|-. + +. .+...|+... .+++.+ ..|+ ++-+..++ +.|+. +++=|+..
T Consensus 100 ~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~~ 179 (229)
T PRK13226 100 VEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDDER 179 (229)
T ss_pred HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeCCCHH
Confidence 567888888888865555432 2 22 2334565321 234332 2233 34455555 34542 34557776
Q ss_pred HHHHHHhH
Q 015304 132 ELHKIRKW 139 (409)
Q Consensus 132 el~~i~~~ 139 (409)
.++.-.+.
T Consensus 180 Di~aA~~a 187 (229)
T PRK13226 180 DILAARAA 187 (229)
T ss_pred HHHHHHHC
Confidence 66655443
No 346
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=21.77 E-value=1.6e+02 Score=21.45 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=30.4
Q ss_pred HHHHcCCcEEEcCHHHHHHHHhCCCCC-------CcEEEeCCCCCHHHHHHHHH
Q 015304 73 ALAALGSNFDCASRSEIEAVLALGVSP-------DRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 73 ~l~~~G~g~~vaS~~E~~~a~~~G~~~-------~~Ii~~gp~k~~~~i~~a~~ 119 (409)
.+.+.|+.+++-...+...+.+.|+.. +++.|.|-..+.++|+.+++
T Consensus 23 ~~~~~~i~~ei~~~~~~~~~~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 23 AAEELGIEVEIIDIEDFEEIEKYGVMSVPALVINGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHHTTEEEEEEETTTHHHHHHTT-SSSSEEEETTEEEEESS--HHHHHHHHHH
T ss_pred HHHhcCCeEEEEEccCHHHHHHcCCCCCCEEEECCEEEEEecCCCHHHHHHHhC
Confidence 334457777888888888888887532 35667775567778777654
No 347
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=21.70 E-value=3.6e+02 Score=25.20 Aligned_cols=38 Identities=32% Similarity=0.342 Sum_probs=28.7
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 67 EPALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 67 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
...+++...+.|. =+||.+..|++.++.+|. .-|-+++
T Consensus 147 l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a--~iiGINn 186 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHNEEELERALEAGA--DIIGINN 186 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT---SEEEEES
T ss_pred HHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCC--CEEEEeC
Confidence 3677888888897 699999999999999984 3444554
No 348
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=21.69 E-value=6.4e+02 Score=23.26 Aligned_cols=135 Identities=17% Similarity=0.227 Sum_probs=71.6
Q ss_pred HHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEe
Q 015304 71 LEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIK 150 (409)
Q Consensus 71 l~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~ 150 (409)
++.+.+.-..+|++--.|+... ...+.|+++.+ -|-|. +++. -+.|.. +..+.+.|..+.+..+. -++||+
T Consensus 57 l~~~~~~~lNlE~a~~~emi~i-a~~vkP~~vtL-VPEkr-~ElT--TegGld--v~~~~~~l~~~i~~l~~--~gI~VS 127 (237)
T TIGR00559 57 LKEALTTPFNIEMAPTEEMIRI-AEEIKPEQVTL-VPEAR-DEVT--TEGGLD--VARLKDKLCELVKRFHA--AGIEVS 127 (237)
T ss_pred HHHHcCCCEEeccCCCHHHHHH-HHHcCCCEEEE-CCCCC-CCcc--CCcCch--hhhCHHHHHHHHHHHHH--CCCEEE
Confidence 3333334558888887777643 23356765554 55443 3433 255554 35566666665544332 234444
Q ss_pred cCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCC--CCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 015304 151 PPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAA--TKFAAYRGAIAAAKAVFETAARLGNNKMR 228 (409)
Q Consensus 151 ~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~--~~~~~~~~~i~~~~~~~~~~~~~g~~~~~ 228 (409)
.- ++ ++ .+-++.+++.|...+= .|.|... .+.....+.++++....+.+.++|+
T Consensus 128 LF--------------iD--P~--~~qi~~A~~~GAd~VE--LhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL---- 183 (237)
T TIGR00559 128 LF--------------ID--AD--KDQISAAAEVGADRIE--IHTGPYANAYNKKEMAEELQRIVKASVHAHSLGL---- 183 (237)
T ss_pred EE--------------eC--CC--HHHHHHHHHhCcCEEE--EechhhhcCCCchhHHHHHHHHHHHHHHHHHcCC----
Confidence 31 11 22 2334445555655544 4555432 2222323457777777777888887
Q ss_pred EEeecCCCCc
Q 015304 229 VLDIGGGFSF 238 (409)
Q Consensus 229 ~ldiGGG~~~ 238 (409)
-+|-|-|+-.
T Consensus 184 ~VnAGHgLny 193 (237)
T TIGR00559 184 KVNAGHGLNY 193 (237)
T ss_pred EEecCCCCCH
Confidence 4688888754
No 349
>PRK14847 hypothetical protein; Provisional
Probab=21.69 E-value=7.6e+02 Score=24.09 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCC-cEE----EcCHHHHHHHHhC---CC--CCCcEEEeCCCCCHHHHHHHHHcCC
Q 015304 68 PALLEALAALGS-NFD----CASRSEIEAVLAL---GV--SPDRIIYANPCKPVSHIKYAANVGV 122 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~----vaS~~E~~~a~~~---G~--~~~~Ii~~gp~k~~~~i~~a~~~gv 122 (409)
..|++.|.+.|+ -+| ++|..|.+.+++. +. ...+|.-.+.. ..++|+.+++.+.
T Consensus 57 l~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~-~~~dId~a~e~~~ 120 (333)
T PRK14847 57 LRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQS-RPDLIARTFEALA 120 (333)
T ss_pred HHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecC-cHHHHHHHHHHhC
Confidence 578888888886 444 4677777655543 32 12345544553 3577888877655
No 350
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=21.55 E-value=5.3e+02 Score=22.93 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEeCCC-----CCHHHHHHHHHc---CCcEE---EecCHHHHH
Q 015304 68 PALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYANPC-----KPVSHIKYAANV---GVNLT---TFDSVEELH 134 (409)
Q Consensus 68 ~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~-----k~~~~i~~a~~~---gv~~~---~vds~~el~ 134 (409)
..+++.....|. -++|.+..|++.+.+.|+ +.|.+++-. ...+.++.+.+. ++.++ -+.+.+++.
T Consensus 111 ~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~--~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~ 188 (217)
T cd00331 111 KELYELARELGMEVLVEVHDEEELERALALGA--KIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVK 188 (217)
T ss_pred HHHHHHHHHcCCeEEEEECCHHHHHHHHHcCC--CEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHH
Confidence 344444555676 357899999999999986 566666321 112334444332 34322 346778888
Q ss_pred HHHhHC
Q 015304 135 KIRKWH 140 (409)
Q Consensus 135 ~i~~~~ 140 (409)
++.+..
T Consensus 189 ~~~~~G 194 (217)
T cd00331 189 RLAEAG 194 (217)
T ss_pred HHHHcC
Confidence 887653
No 351
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.45 E-value=6.9e+02 Score=24.32 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=13.0
Q ss_pred eHHHHHHHHHHHHHhCCCcce
Q 015304 38 DLGVVVTLYNQMISKLPMIHP 58 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i 58 (409)
+.+.+.+-++.+++.+|++.+
T Consensus 110 ~~~~~~e~i~~Ik~~~p~i~i 130 (351)
T TIGR03700 110 PFEWYLDMIRTLKEAYPDLHV 130 (351)
T ss_pred CHHHHHHHHHHHHHHCCCceE
Confidence 345666677777766665444
No 352
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=21.39 E-value=7.8e+02 Score=24.15 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHH-hHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEE
Q 015304 112 SHIKYAANVGVNLTTFDSVEELHKIR-KWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVG 190 (409)
Q Consensus 112 ~~i~~a~~~gv~~~~vds~~el~~i~-~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~G 190 (409)
.-++.+++.|+.. .+-..--++... ....+..+.+|+|.+.. +...++ . .+.+..-++.+-..|-.-+|
T Consensus 95 ~~i~~a~~~g~dA-v~~~~G~l~~~~~~~~~~iplIlkln~~t~----l~~~~~---~--~~~l~~sVedAlrLGAdAV~ 164 (348)
T PRK09250 95 NIVKLAIEAGCNA-VASTLGVLEAVARKYAHKIPFILKLNHNEL----LSYPNT---Y--DQALTASVEDALRLGAVAVG 164 (348)
T ss_pred HHHHHHHhcCCCE-EEeCHHHHHhccccccCCCCEEEEeCCCCC----CCCCCC---C--cccceecHHHHHHCCCCEEE
Confidence 3667778888874 456676666643 23356779999985211 100011 0 11111112223345777888
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Q 015304 191 VAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNN 225 (409)
Q Consensus 191 lh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~ 225 (409)
+|..+||.. + .++++.+.++.+.++++|+|
T Consensus 165 ~tvy~Gs~~---E--~~ml~~l~~i~~ea~~~GlP 194 (348)
T PRK09250 165 ATIYFGSEE---S--RRQIEEISEAFEEAHELGLA 194 (348)
T ss_pred EEEecCCHH---H--HHHHHHHHHHHHHHHHhCCC
Confidence 999999632 2 36777888888999999983
No 353
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=21.28 E-value=7.6e+02 Score=23.98 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=31.2
Q ss_pred EeHHHHHHHHHHHHHhCCCc--ceEEecCcCC------cHHHHHHHHHcCC-cEEEcC
Q 015304 37 LDLGVVVTLYNQMISKLPMI--HPHYAVKCNP------EPALLEALAALGS-NFDCAS 85 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~~--~i~yavKan~------~~~vl~~l~~~G~-g~~vaS 85 (409)
-+.+.+.+-++++++..+.. ++=..+|-.+ ...+++.+.+.|+ ++.+..
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 45667777788887765410 1222356655 3568888888898 777764
No 354
>PLN02535 glycolate oxidase
Probab=21.24 E-value=5.7e+02 Score=25.27 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=41.3
Q ss_pred EecCcCCcHHHHHHHHHcCC-cEEEc------------CHHHHHHHHhC-CCCCCcEEEeCCCCCHHHHHHHHHcCCcEE
Q 015304 60 YAVKCNPEPALLEALAALGS-NFDCA------------SRSEIEAVLAL-GVSPDRIIYANPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 60 yavKan~~~~vl~~l~~~G~-g~~va------------S~~E~~~a~~~-G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~ 125 (409)
..+|---++.-++.+.+.|+ ++.|+ +..-+..++++ +-. -.|+..|...+..++..|+..|...+
T Consensus 226 vivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~-ipVi~dGGIr~g~Dv~KALalGA~aV 304 (364)
T PLN02535 226 ILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGR-VPVLLDGGVRRGTDVFKALALGAQAV 304 (364)
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcC-CCEEeeCCCCCHHHHHHHHHcCCCEE
Confidence 34675555666777888887 66664 23333333322 211 35777788788888888888887644
Q ss_pred Eec
Q 015304 126 TFD 128 (409)
Q Consensus 126 ~vd 128 (409)
.+.
T Consensus 305 ~vG 307 (364)
T PLN02535 305 LVG 307 (364)
T ss_pred EEC
Confidence 433
No 355
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=21.13 E-value=2e+02 Score=27.63 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=10.3
Q ss_pred CHHHHHHHHH------cCCcEEEecCH
Q 015304 110 PVSHIKYAAN------VGVNLTTFDSV 130 (409)
Q Consensus 110 ~~~~i~~a~~------~gv~~~~vds~ 130 (409)
+.+++..|++ .|+.++.+|+.
T Consensus 212 tleea~ea~~~~~~~~agaDiImLDnm 238 (308)
T PLN02716 212 TLEEVKEVLEYLSDTKTSLTRVMLDNM 238 (308)
T ss_pred CHHHHHHHHHhcccccCCCCEEEeCCC
Confidence 3455555555 45544445544
No 356
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=21.13 E-value=68 Score=31.11 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=24.8
Q ss_pred HHHHHHHHcCC---cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHH
Q 015304 69 ALLEALAALGS---NFDCASRSEIEAVLALGVSPDRIIYANPCKPVS 112 (409)
Q Consensus 69 ~vl~~l~~~G~---g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~ 112 (409)
.++..+.+.|. .+|+-..-....+..+|++.+++++.-|. +.+
T Consensus 72 ~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~-~~E 117 (322)
T PF00154_consen 72 HAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPD-TGE 117 (322)
T ss_dssp HHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-S-SHH
T ss_pred HHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCC-cHH
Confidence 33444444452 77776666677788999999999998884 444
No 357
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=21.11 E-value=85 Score=23.26 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=11.2
Q ss_pred CCCCCCEEEEcCCCccccc
Q 015304 368 ELEVTDWLVFSEMGAYTRA 386 (409)
Q Consensus 368 ~l~~GD~l~~~~~GAY~~s 386 (409)
.|.+||.|.|.++|+-+.|
T Consensus 27 Gl~vGD~VnFsnsa~tGvS 45 (83)
T PF12195_consen 27 GLFVGDFVNFSNSAVTGVS 45 (83)
T ss_dssp ---TT-EEEEES-SSTT--
T ss_pred ceeecceEEEecccccccc
Confidence 7899999999999987765
No 358
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.80 E-value=7.2e+02 Score=23.49 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=14.1
Q ss_pred CHHHHHHHHHcCCcE--EEe--cCHHHHHHHHh
Q 015304 110 PVSHIKYAANVGVNL--TTF--DSVEELHKIRK 138 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~--~~v--ds~~el~~i~~ 138 (409)
+++.++.|.+.|..+ .++ ++.++++++.+
T Consensus 250 ~~~~v~~~~~~Gl~v~~wTv~~n~~~~~~~l~~ 282 (293)
T cd08572 250 NPSLISLVKALGLVLFTYGDDNNDPENVKKQKE 282 (293)
T ss_pred CcHHHHHHHHcCcEEEEECCCCCCHHHHHHHHH
Confidence 345555555555531 245 45555555444
No 359
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=20.72 E-value=3.4e+02 Score=26.25 Aligned_cols=18 Identities=6% Similarity=-0.195 Sum_probs=12.8
Q ss_pred CcceEEecCcCCcHHHHH
Q 015304 55 MIHPHYAVKCNPEPALLE 72 (409)
Q Consensus 55 ~~~i~yavKan~~~~vl~ 72 (409)
..++.+.+|+..+|....
T Consensus 23 ~~~i~~v~k~~~~pf~~~ 40 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTS 40 (336)
T ss_pred CcEEEEEECCCCCHHHHH
Confidence 457889999887665443
No 360
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=20.67 E-value=8.3e+02 Score=26.70 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=73.5
Q ss_pred eccccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCCCcceE--EecCcC--CcHHHHHHHHHcCCcEEEcC
Q 015304 10 VTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPH--YAVKCN--PEPALLEALAALGSNFDCAS 85 (409)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~--yavKan--~~~~vl~~l~~~G~g~~vaS 85 (409)
++..+|.+|+...+. ..++|+.+ |.....---..++ ..++--+. -.+|-- .....++++++.|+.+-+.+
T Consensus 81 D~~~~m~~~l~~~a~----~~~vPlMI-DSs~~eviEagLk-~~qGk~ivNSis~eege~~f~~~~~LvkkYGaaVVvma 154 (842)
T COG1410 81 DGVADMVELLNLLAN----EPTVPLMI-DSSEWEVIEAGLK-CAQGKCIVNSINYEEGEERFEKVAELVKKYGAAVVVMT 154 (842)
T ss_pred ccHHHHHHHHHHhcc----CCCCceEE-ehhHHHHHHHHHh-hccCceeeeeeeecccHHHHHHHHHHHHHhCCcEEEEe
Confidence 344666666666553 33347654 4333322222222 33321122 223333 46788899999999888887
Q ss_pred HHH-----------------HHHHHhCCCCCCcEEEeCCCCCHH-HHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEE
Q 015304 86 RSE-----------------IEAVLALGVSPDRIIYANPCKPVS-HIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLI 147 (409)
Q Consensus 86 ~~E-----------------~~~a~~~G~~~~~Ii~~gp~k~~~-~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~l 147 (409)
..| ..+..+.||+|++|+|.....+.. .+++-.+ ..+|-++.+.+|.+..|...+.+
T Consensus 155 ~DE~GqA~t~eRK~eIakR~y~l~~~~gfpp~dIIfDPnvf~iaTgiEEh~~-----~gvd~Ieair~Ik~~LP~~~tt~ 229 (842)
T COG1410 155 IDEEGQARTAERKFEIAKRAYILTEEVGFPPEDIIFDPNVFPIATGIEEHRN-----YGVDTIEAIRRIKKELPHVLTTL 229 (842)
T ss_pred eccccccccHHHHHHHHHHHHHHHHhcCCCchheeeccceeeeccchhhhhh-----hHHHHHHHHHHHHHhCccceecc
Confidence 766 124456799999999986654321 2222222 24566788888888777655444
Q ss_pred EE
Q 015304 148 RI 149 (409)
Q Consensus 148 Rv 149 (409)
=+
T Consensus 230 Gv 231 (842)
T COG1410 230 GL 231 (842)
T ss_pred cc
Confidence 33
No 361
>PRK10425 DNase TatD; Provisional
Probab=20.64 E-value=5.3e+02 Score=23.98 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=33.1
Q ss_pred EecCcCCcHHHHHHHHHc------CC-cEEEcCHHHHHHHHhCCCCCCcEEEeCCC---CCHHHHHHHHH
Q 015304 60 YAVKCNPEPALLEALAAL------GS-NFDCASRSEIEAVLALGVSPDRIIYANPC---KPVSHIKYAAN 119 (409)
Q Consensus 60 yavKan~~~~vl~~l~~~------G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~---k~~~~i~~a~~ 119 (409)
-+.+|. ..++++|.+. |+ +.=..|..+++.+++.|+ -|.++|.. +...+++.+++
T Consensus 127 H~r~a~--~~~l~iL~~~~~~~~~~i~H~fsG~~~~~~~~l~~G~---~~si~g~i~~~~~~~~~~~~~~ 191 (258)
T PRK10425 127 HCRDAH--ERFMALLEPWLDKLPGAVLHCFTGTREEMQACLARGL---YIGITGWVCDERRGLELRELLP 191 (258)
T ss_pred EEeCch--HHHHHHHHHhccCCCCeEEEecCCCHHHHHHHHHCCC---EEEECceeecccccHHHHHHHH
Confidence 344444 6677777653 22 333458899999999986 46666632 33346666664
No 362
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=20.62 E-value=3.2e+02 Score=24.90 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHHcC----CeEEEEEEeeCCCCCC
Q 015304 172 QEIVPLLEAAEASG----LSVVGVAFHIGSAATK 201 (409)
Q Consensus 172 ~~~~~~~~~~~~~~----l~l~Glh~H~gs~~~~ 201 (409)
+++.++++.++..+ =.=.|+|.|++-...+
T Consensus 92 ~~i~~~~~~lr~~~~~~~~~scg~HVHv~~~~~~ 125 (252)
T PF12224_consen 92 EEIDKVLEALRRNGAIGTNDSCGFHVHVGPEPPS 125 (252)
T ss_pred HHHHHHHHHHHHcCCccccCCeeEEEEECCCCCC
Confidence 34556666665432 1238999999876543
No 363
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=20.62 E-value=6.3e+02 Score=22.73 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=50.9
Q ss_pred cEEEEeHHHHHHHHHHH----HHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCH--HHHH-HHHhCCCCCCcEEEe
Q 015304 33 PFYILDLGVVVTLYNQM----ISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASR--SEIE-AVLALGVSPDRIIYA 105 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~----~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~--~E~~-~a~~~G~~~~~Ii~~ 105 (409)
-.+++|++.-...++.. .+.-++--++-..|......|.+.....|..+-+.-. +=+- .-.+....|+-+++.
T Consensus 42 gi~IIdL~kT~~~L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~ 121 (204)
T PRK04020 42 GLYVLDVRKTDERIRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVT 121 (204)
T ss_pred CCEEEcHHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEE
Confidence 46889988754444433 2322333344445554456677777677764322100 0000 001122466778888
Q ss_pred CCCCCHHHHHHHHHcCCcEE
Q 015304 106 NPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~ 125 (409)
.|.+....+++|...|+.++
T Consensus 122 dp~~~~~AI~EA~kl~IP~I 141 (204)
T PRK04020 122 DPRGDAQAVKEAIEVGIPVV 141 (204)
T ss_pred CCcccHHHHHHHHHhCCCEE
Confidence 88888788888888887644
No 364
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=20.59 E-value=5.6e+02 Score=24.71 Aligned_cols=18 Identities=11% Similarity=0.390 Sum_probs=10.4
Q ss_pred EEEEeHHHHHHHHHHHHH
Q 015304 34 FYILDLGVVVTLYNQMIS 51 (409)
Q Consensus 34 ~~v~d~~~l~~n~~~~~~ 51 (409)
.+..+.+.+.+.++.+++
T Consensus 69 ~~~ls~eei~~~~~~~~~ 86 (340)
T TIGR03699 69 GYVLSVEEILQKIEELVA 86 (340)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 345666666666665543
No 365
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.42 E-value=3.5e+02 Score=27.56 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred EEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC---cEEEcCHHH------------------HHHHH
Q 015304 35 YILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS---NFDCASRSE------------------IEAVL 93 (409)
Q Consensus 35 ~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~---g~~vaS~~E------------------~~~a~ 93 (409)
+..+.+.+.+-++.+++. ++.......++-++++++.|+++|+ .+.+-|..+ ++.++
T Consensus 256 f~~~~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~ 333 (472)
T TIGR03471 256 FTDDKPRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCH 333 (472)
T ss_pred CCCCHHHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHH
Q ss_pred hCCCCCC-cEEEeCCCCCHHHHHHHHH
Q 015304 94 ALGVSPD-RIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 94 ~~G~~~~-~Ii~~gp~k~~~~i~~a~~ 119 (409)
++|+... .+++.-|.-+.++++.-++
T Consensus 334 ~~Gi~v~~~~IiGlPget~e~~~~ti~ 360 (472)
T TIGR03471 334 KLGIKVHGTFILGLPGETRETIRKTID 360 (472)
T ss_pred HCCCeEEEEEEEeCCCCCHHHHHHHHH
No 366
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=20.40 E-value=3.4e+02 Score=26.72 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=27.8
Q ss_pred HHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEee
Q 015304 180 AAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDI 232 (409)
Q Consensus 180 ~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldi 232 (409)
.+++.|.++.|+|+.......+.......-+....+-..++++|+ ++.++|+
T Consensus 19 LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI-p~~v~d~ 70 (356)
T PF03054_consen 19 LLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGI-PHYVVDL 70 (356)
T ss_dssp HHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT---EEEEET
T ss_pred HHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCC-CEEEECh
Confidence 356779999999999977644333111112223333445677898 8888884
No 367
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=20.37 E-value=3.5e+02 Score=25.28 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCC-cEEEcCH-----HHHHHHH-hCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC---------HH
Q 015304 68 PALLEALAALGS-NFDCASR-----SEIEAVL-ALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS---------VE 131 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~-----~E~~~a~-~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds---------~~ 131 (409)
...++...+.|+ .+-+..+ .-++.+. ..+ -++.+.|...+ ++++.+++.|+..+.+.| .+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDLg~~n~~~i~~i~~~~~---~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~ 116 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIMLGPNNDDAAKEALHAYP---GGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLK 116 (253)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcHHHHHHHHHhCC---CCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHH
Confidence 456666666666 3333221 1122222 233 36888888876 999999999998778877 55
Q ss_pred HHHHHHhHCCCCeEEEEEec
Q 015304 132 ELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 132 el~~i~~~~~~~~v~lRv~~ 151 (409)
.++.+.+.+...+|.+-++.
T Consensus 117 ~~~~i~~~fG~~~IvvsiD~ 136 (253)
T TIGR02129 117 RLKEIVSLVGKDRLIVDLSC 136 (253)
T ss_pred HHHHHHHHhCCCCEEEEEEE
Confidence 77777777644556665553
No 368
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=20.27 E-value=1.8e+02 Score=25.78 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=12.0
Q ss_pred HHhCCCCCCcEEEeCCCCCHHHHHHHHHcCC
Q 015304 92 VLALGVSPDRIIYANPCKPVSHIKYAANVGV 122 (409)
Q Consensus 92 a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv 122 (409)
+...|.+|..|+|.+- .++||+.|.+.|.
T Consensus 170 a~~iGl~p~eilFLSD--n~~EL~AA~~vGl 198 (229)
T COG4229 170 AGDIGLPPAEILFLSD--NPEELKAAAGVGL 198 (229)
T ss_pred HHhcCCCchheEEecC--CHHHHHHHHhcch
Confidence 3444444444444443 2344444444443
No 369
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.27 E-value=2.3e+02 Score=26.48 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAA 211 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~ 211 (409)
++++.+.++.++..--.-.|++.-+..+...-+...++++.
T Consensus 124 p~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~ 164 (256)
T PRK14828 124 PAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRS 164 (256)
T ss_pred CHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHH
Confidence 56777777766442222344445554444444444444433
No 370
>PRK07094 biotin synthase; Provisional
Probab=20.17 E-value=7.6e+02 Score=23.49 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=55.3
Q ss_pred HHHHHhCCCCCCcEEEeC---CCCCHHHHHHH----HH-cCCcE-EEe--cCHHHHHHHHhHCCCCeEEEEEecCCCCCC
Q 015304 89 IEAVLALGVSPDRIIYAN---PCKPVSHIKYA----AN-VGVNL-TTF--DSVEELHKIRKWHPKCDLLIRIKPPDDSGA 157 (409)
Q Consensus 89 ~~~a~~~G~~~~~Ii~~g---p~k~~~~i~~a----~~-~gv~~-~~v--ds~~el~~i~~~~~~~~v~lRv~~~~~~~~ 157 (409)
++.+.+.|+ ..|.+.| +....+.+..+ .+ .++.+ +++ -+.+.++.+.+..- ..+.+.+..... .
T Consensus 79 ~~~~~~~g~--~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~-~~v~~glEs~~~--~ 153 (323)
T PRK07094 79 AKKAYELGY--RTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGA-DRYLLRHETADK--E 153 (323)
T ss_pred HHHHHHCCC--CEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCC-CEEEeccccCCH--H
Confidence 444555676 5677764 32344444433 23 35531 222 34677877776532 233333332110 0
Q ss_pred CCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHH
Q 015304 158 KHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYR 206 (409)
Q Consensus 158 ~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~ 206 (409)
..+.-+| +.+ .++..+.++.+++.|+. ++.++=+|-...+.+.+.
T Consensus 154 ~~~~i~~-~~s--~~~~~~~i~~l~~~Gi~-v~~~~iiGlpget~ed~~ 198 (323)
T PRK07094 154 LYAKLHP-GMS--FENRIACLKDLKELGYE-VGSGFMVGLPGQTLEDLA 198 (323)
T ss_pred HHHHhCC-CCC--HHHHHHHHHHHHHcCCe-ecceEEEECCCCCHHHHH
Confidence 0001123 555 77888888888888886 456666665333444443
No 371
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=20.16 E-value=4.2e+02 Score=25.39 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeCCCC---C-CHHHHHHHHHHHHHHHHHHHHcCCC--CCcEEeecCCCCcC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIGSAA---T-KFAAYRGAIAAAKAVFETAARLGNN--KMRVLDIGGGFSFT 239 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~gs~~---~-~~~~~~~~i~~~~~~~~~~~~~g~~--~~~~ldiGGG~~~~ 239 (409)
+++.++=+.+..+++++. +|.+... + .++-...+++.+..-.++++..|+. .+..|++||-++..
T Consensus 116 ~eL~evGe~a~~~~~Rl~---~HPdQf~vl~S~~~eV~~ssir~layH~r~l~~mgl~~Rs~~~lhlgg~~gGK 186 (347)
T COG4294 116 SELEEVGELANKHNHRLT---MHPDQFTVLNSPREEVVDSSIRDLAYHYRILDGMGLAERSVWNLHLGGTHGGK 186 (347)
T ss_pred HHHHHHHHHHHhhCceee---ecCCceEEecCCchHHHHHHHHHHHHHHHHHhhcCCCcCCceEEEeccccCCc
Confidence 344555555566777664 8876532 1 2233345566655555666667762 35678999988875
No 372
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=20.07 E-value=2.2e+02 Score=25.03 Aligned_cols=11 Identities=36% Similarity=0.404 Sum_probs=5.1
Q ss_pred HHHHHHHHcCC
Q 015304 69 ALLEALAALGS 79 (409)
Q Consensus 69 ~vl~~l~~~G~ 79 (409)
.+++.|.+.|.
T Consensus 101 ~~L~~L~~~g~ 111 (211)
T TIGR02247 101 AAIKTLRAKGF 111 (211)
T ss_pred HHHHHHHHCCC
Confidence 34444444454
No 373
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=20.03 E-value=2.7e+02 Score=27.09 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCC
Q 015304 142 KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSA 198 (409)
Q Consensus 142 ~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~ 198 (409)
...|++|+++.+. ..=|.+ .++..++++.+++.++.+ ||+|.|+.
T Consensus 207 ~~~v~vRis~~d~--------~~~G~~--~~e~~~i~~~l~~~gvD~--i~vs~g~~ 251 (337)
T PRK13523 207 DGPLFVRISASDY--------HPGGLT--VQDYVQYAKWMKEQGVDL--IDVSSGAV 251 (337)
T ss_pred CCCeEEEeccccc--------CCCCCC--HHHHHHHHHHHHHcCCCE--EEeCCCCC
Confidence 4579999997321 112777 888889988887777644 67777763
Done!