Query 015304
Match_columns 409
No_of_seqs 212 out of 1688
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 10:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7odc_A Protein (ornithine deca 100.0 7.5E-76 2.6E-80 586.9 42.5 387 4-405 9-411 (424)
2 2oo0_A ODC, ornithine decarbox 100.0 2E-70 6.8E-75 554.0 44.8 385 5-404 20-420 (471)
3 3vab_A Diaminopimelate decarbo 100.0 1.8E-70 6.2E-75 550.6 37.3 355 28-402 46-416 (443)
4 3btn_A Antizyme inhibitor 1; T 100.0 1.3E-69 4.3E-74 545.9 40.1 382 5-404 11-408 (448)
5 1f3t_A ODC, ornithine decarbox 100.0 7.2E-69 2.5E-73 537.7 42.4 380 11-406 17-411 (425)
6 3n2b_A Diaminopimelate decarbo 100.0 2.5E-69 8.5E-74 542.1 35.3 353 28-402 49-415 (441)
7 2nva_A Arginine decarboxylase, 100.0 4.3E-67 1.5E-71 516.9 39.9 369 17-401 3-371 (372)
8 3mt1_A Putative carboxynorsper 100.0 7.9E-67 2.7E-71 512.6 27.9 334 29-402 2-343 (365)
9 3n29_A Carboxynorspermidine de 100.0 3E-66 1E-70 515.3 29.7 339 27-402 40-397 (418)
10 2plj_A Lysine/ornithine decarb 100.0 2.3E-64 7.9E-69 503.7 38.3 357 27-403 51-408 (419)
11 2o0t_A Diaminopimelate decarbo 100.0 2.5E-65 8.6E-70 517.7 30.8 361 28-402 39-426 (467)
12 1knw_A Diaminopimelate decarbo 100.0 1.4E-63 4.9E-68 499.3 41.1 350 28-403 23-398 (425)
13 2j66_A BTRK, decarboxylase; bu 100.0 7.3E-64 2.5E-68 502.7 38.8 363 27-403 13-396 (428)
14 2qgh_A Diaminopimelate decarbo 100.0 5.7E-63 2E-67 495.4 36.5 355 27-402 29-397 (425)
15 1twi_A Diaminopimelate decarbo 100.0 1.7E-62 5.7E-67 493.7 35.2 356 28-402 27-406 (434)
16 2yxx_A Diaminopimelate decarbo 100.0 3.2E-62 1.1E-66 484.4 34.1 344 28-402 10-362 (386)
17 2p3e_A Diaminopimelate decarbo 100.0 3.7E-59 1.3E-63 467.5 36.4 353 28-402 31-396 (420)
18 3nzp_A Arginine decarboxylase; 100.0 5.7E-53 1.9E-57 434.0 38.4 374 13-401 29-537 (619)
19 3nzq_A ADC, biosynthetic argin 100.0 2.3E-52 7.7E-57 431.6 34.2 374 13-402 70-587 (666)
20 3n2o_A ADC, biosynthetic argin 100.0 9.2E-52 3.1E-56 425.9 32.9 373 13-402 48-570 (648)
21 2dy3_A Alanine racemase; alpha 100.0 1.5E-40 5.1E-45 326.2 16.1 313 33-383 4-332 (361)
22 1xfc_A Alanine racemase; alpha 100.0 3.4E-40 1.2E-44 326.1 17.2 318 28-383 8-347 (384)
23 2vd8_A Alanine racemase; pyrid 100.0 1.5E-39 5E-44 322.1 19.8 320 29-386 9-348 (391)
24 1bd0_A Alanine racemase; isome 100.0 2.8E-39 9.7E-44 319.5 16.7 314 33-386 8-341 (388)
25 1vfs_A Alanine racemase; TIM-b 100.0 4.1E-39 1.4E-43 318.5 16.4 319 29-383 5-344 (386)
26 3co8_A Alanine racemase; prote 100.0 4.1E-36 1.4E-40 296.3 12.5 321 29-387 7-344 (380)
27 1rcq_A Catabolic alanine racem 100.0 2.9E-34 9.8E-39 281.0 13.4 306 33-381 4-326 (357)
28 2rjg_A Alanine racemase; alpha 100.0 1.2E-33 4E-38 278.4 14.9 310 30-381 22-348 (379)
29 4ecl_A Serine racemase, vantg; 100.0 6.6E-33 2.2E-37 271.8 18.9 314 33-380 7-338 (374)
30 3e5p_A Alanine racemase; ALR, 100.0 2.4E-32 8.2E-37 267.2 14.0 309 33-381 9-337 (371)
31 3kw3_A Alanine racemase; niaid 100.0 7.5E-32 2.6E-36 263.8 15.1 309 29-381 18-346 (376)
32 4a3q_A Alanine racemase 1; iso 100.0 1.7E-31 5.7E-36 261.8 13.6 307 33-381 9-335 (382)
33 3mub_A Alanine racemase; alpha 100.0 5E-31 1.7E-35 257.5 16.0 308 33-381 9-333 (367)
34 3anu_A D-serine dehydratase; P 100.0 1.1E-30 3.6E-35 257.5 16.6 254 27-311 8-286 (376)
35 3hur_A Alanine racemase; struc 100.0 4.9E-30 1.7E-34 251.8 11.2 311 33-380 10-340 (395)
36 3llx_A Predicted amino acid al 99.9 5.1E-25 1.8E-29 216.7 20.9 251 27-310 10-280 (376)
37 3gwq_A D-serine deaminase; str 99.9 3E-23 1E-27 206.7 29.3 194 27-235 42-252 (426)
38 3cpg_A Uncharacterized protein 99.8 8E-20 2.7E-24 172.5 19.1 188 35-235 25-247 (282)
39 3sy1_A UPF0001 protein YGGS; e 99.6 7.3E-15 2.5E-19 135.0 18.2 167 55-235 29-206 (245)
40 1ct5_A Protein (yeast hypothet 99.5 6.7E-14 2.3E-18 129.7 15.1 180 38-233 17-221 (256)
41 3r79_A Uncharacterized protein 99.4 4.9E-12 1.7E-16 115.8 17.4 175 39-235 10-198 (244)
42 1i60_A IOLI protein; beta barr 89.5 2.8 9.7E-05 37.5 11.2 100 172-280 46-146 (278)
43 3m0m_A L-rhamnose isomerase; b 89.5 2.4 8.2E-05 41.5 11.1 101 172-278 107-221 (438)
44 3qc0_A Sugar isomerase; TIM ba 88.9 1.2 4.2E-05 40.0 8.2 60 171-231 44-103 (275)
45 1ur4_A Galactanase; hydrolase, 88.4 14 0.00048 35.6 15.6 144 80-258 27-188 (399)
46 3obe_A Sugar phosphate isomera 88.0 2.8 9.6E-05 38.7 10.2 97 172-279 76-172 (305)
47 3tva_A Xylose isomerase domain 86.5 3.8 0.00013 37.1 10.1 98 171-278 50-160 (290)
48 3vni_A Xylose isomerase domain 86.2 2.7 9.2E-05 38.2 8.9 99 171-278 46-153 (294)
49 3ktc_A Xylose isomerase; putat 86.0 9 0.00031 35.6 12.6 61 172-235 61-129 (333)
50 3ngf_A AP endonuclease, family 85.8 2.9 0.0001 37.5 8.8 96 173-277 49-151 (269)
51 3cqj_A L-ribulose-5-phosphate 85.8 3.7 0.00013 37.3 9.6 100 171-279 65-169 (295)
52 3kws_A Putative sugar isomeras 84.9 3.5 0.00012 37.3 8.9 99 171-278 63-167 (287)
53 2x7v_A Probable endonuclease 4 84.0 4 0.00014 36.7 8.9 97 171-278 46-146 (287)
54 1fob_A Beta-1,4-galactanase; B 83.8 28 0.00096 32.4 15.6 139 80-260 6-165 (334)
55 1k77_A EC1530, hypothetical pr 82.5 4.6 0.00016 35.7 8.6 96 174-278 42-145 (260)
56 1ydn_A Hydroxymethylglutaryl-C 81.2 12 0.0004 34.3 11.0 145 37-199 23-212 (295)
57 2q02_A Putative cytoplasmic pr 80.4 23 0.0008 31.2 12.6 92 171-279 50-142 (272)
58 3f4w_A Putative hexulose 6 pho 78.8 26 0.00089 29.9 11.9 96 43-141 41-158 (211)
59 1qtw_A Endonuclease IV; DNA re 78.7 4.1 0.00014 36.7 6.9 97 171-278 46-147 (285)
60 3u0h_A Xylose isomerase domain 78.6 4.8 0.00016 36.1 7.3 96 172-278 47-143 (281)
61 2zvr_A Uncharacterized protein 78.2 15 0.00052 33.0 10.7 53 172-224 68-127 (290)
62 2ftp_A Hydroxymethylglutaryl-C 77.5 18 0.0006 33.3 10.9 28 171-199 187-216 (302)
63 1nvm_A HOA, 4-hydroxy-2-oxoval 76.1 17 0.00058 34.2 10.5 27 171-198 177-206 (345)
64 1hjs_A Beta-1,4-galactanase; 4 74.5 51 0.0018 30.6 13.4 141 80-260 6-164 (332)
65 2g0w_A LMO2234 protein; putati 74.0 30 0.001 31.2 11.5 89 172-278 68-156 (296)
66 3aal_A Probable endonuclease 4 72.5 36 0.0012 30.8 11.7 95 171-278 52-151 (303)
67 3dx5_A Uncharacterized protein 72.3 6.8 0.00023 35.2 6.5 97 171-278 47-144 (286)
68 1bxb_A Xylose isomerase; xylos 72.1 15 0.0005 35.0 9.2 100 172-278 69-182 (387)
69 2htm_A Thiazole biosynthesis p 71.5 58 0.002 29.3 12.4 116 7-129 68-208 (268)
70 3kts_A Glycerol uptake operon 71.0 12 0.00041 32.1 7.3 72 34-129 108-180 (192)
71 1xim_A D-xylose isomerase; iso 70.1 9.7 0.00033 36.4 7.4 53 172-224 69-130 (393)
72 1xla_A D-xylose isomerase; iso 68.9 11 0.00038 36.1 7.5 60 173-235 70-138 (394)
73 1muw_A Xylose isomerase; atomi 68.4 13 0.00045 35.4 7.9 61 173-236 70-139 (386)
74 3l12_A Putative glycerophospho 66.7 37 0.0013 31.2 10.4 104 29-139 179-307 (313)
75 3lab_A Putative KDPG (2-keto-3 66.0 37 0.0013 29.6 9.5 63 82-151 71-140 (217)
76 3cny_A Inositol catabolism pro 65.9 27 0.00092 31.3 9.3 56 173-232 56-111 (301)
77 3ivs_A Homocitrate synthase, m 64.0 1.1E+02 0.0037 29.6 13.5 27 171-198 208-235 (423)
78 2zds_A Putative DNA-binding pr 63.4 41 0.0014 30.7 10.2 54 171-224 50-125 (340)
79 2qw5_A Xylose isomerase-like T 61.2 22 0.00076 32.7 7.8 52 172-224 65-123 (335)
80 2c6q_A GMP reductase 2; TIM ba 60.6 44 0.0015 31.4 9.8 84 41-129 147-253 (351)
81 3qvq_A Phosphodiesterase OLEI0 59.8 91 0.0031 27.4 12.6 98 33-139 145-249 (252)
82 4e38_A Keto-hydroxyglutarate-a 59.3 79 0.0027 27.8 10.5 103 11-125 44-151 (232)
83 4fo4_A Inosine 5'-monophosphat 59.0 81 0.0028 29.8 11.3 25 102-126 214-238 (366)
84 1ydo_A HMG-COA lyase; TIM-barr 58.5 1E+02 0.0034 28.3 11.7 27 171-198 185-213 (307)
85 2yci_X 5-methyltetrahydrofolat 58.2 48 0.0016 29.9 9.2 74 29-107 77-171 (271)
86 3l23_A Sugar phosphate isomera 57.5 33 0.0011 31.2 8.2 97 172-279 59-168 (303)
87 1zcc_A Glycerophosphodiester p 56.7 49 0.0017 29.2 9.0 98 33-138 129-233 (248)
88 3no3_A Glycerophosphodiester p 56.7 1E+02 0.0034 26.9 11.0 96 33-138 132-234 (238)
89 2ztj_A Homocitrate synthase; ( 56.1 96 0.0033 29.4 11.4 27 171-198 172-201 (382)
90 1f6y_A 5-methyltetrahydrofolat 56.1 1.1E+02 0.0037 27.4 11.2 139 30-194 69-231 (262)
91 3ks6_A Glycerophosphoryl diest 55.5 86 0.0029 27.6 10.4 100 33-138 134-242 (250)
92 3m1r_A Formimidoylglutamase; s 55.5 49 0.0017 30.7 9.0 103 89-194 172-289 (322)
93 3usb_A Inosine-5'-monophosphat 55.1 1.7E+02 0.0057 28.9 13.7 92 33-129 270-389 (511)
94 2cw6_A Hydroxymethylglutaryl-C 55.0 1E+02 0.0034 28.0 11.0 145 37-198 24-212 (298)
95 1yxy_A Putative N-acetylmannos 54.8 62 0.0021 28.0 9.2 78 68-149 39-140 (234)
96 2hk0_A D-psicose 3-epimerase; 54.1 42 0.0014 30.3 8.4 52 172-224 66-121 (309)
97 3r2g_A Inosine 5'-monophosphat 53.9 80 0.0027 29.8 10.3 28 101-128 201-228 (361)
98 3aam_A Endonuclease IV, endoiv 52.0 66 0.0023 28.2 9.2 90 171-278 48-141 (270)
99 3lmz_A Putative sugar isomeras 52.0 39 0.0013 29.6 7.6 48 165-224 56-103 (257)
100 3eye_A PTS system N-acetylgala 51.4 1E+02 0.0036 25.5 9.6 84 67-152 48-152 (168)
101 2qul_A D-tagatose 3-epimerase; 50.6 40 0.0014 29.9 7.5 52 172-224 47-102 (290)
102 3qxb_A Putative xylose isomera 50.4 11 0.00038 34.5 3.7 61 173-234 71-137 (316)
103 2pz0_A Glycerophosphoryl diest 50.4 1.1E+02 0.0039 26.7 10.4 98 33-137 146-248 (252)
104 1eye_A DHPS 1, dihydropteroate 47.8 83 0.0028 28.5 9.0 56 68-126 70-129 (280)
105 3tn4_A Phosphotriesterase; lac 47.7 77 0.0026 29.8 9.1 61 68-129 196-264 (360)
106 3tc3_A UV damage endonuclease; 47.0 60 0.002 29.9 7.9 104 127-237 56-168 (310)
107 3ewb_X 2-isopropylmalate synth 44.4 1.5E+02 0.0052 26.8 10.4 28 171-198 178-209 (293)
108 2ztj_A Homocitrate synthase; ( 44.2 1.1E+02 0.0037 29.0 9.6 128 68-212 28-182 (382)
109 1wa3_A 2-keto-3-deoxy-6-phosph 43.7 1.4E+02 0.0049 24.9 14.7 85 38-128 20-131 (205)
110 2yci_X 5-methyltetrahydrofolat 43.7 90 0.0031 28.1 8.5 58 67-127 66-131 (271)
111 1eep_A Inosine 5'-monophosphat 43.6 1.1E+02 0.0037 29.1 9.7 16 82-97 201-216 (404)
112 4fxs_A Inosine-5'-monophosphat 43.5 1.7E+02 0.0059 28.7 11.3 93 33-130 245-365 (496)
113 2ef5_A Arginase; TTHA1496, str 43.4 1.1E+02 0.0038 27.6 9.3 95 97-194 157-261 (290)
114 1gq6_A Proclavaminate amidino 43.0 27 0.00093 32.2 5.1 102 89-194 164-278 (313)
115 1wv2_A Thiazole moeity, thiazo 42.4 1.9E+02 0.0064 25.9 13.2 114 8-129 79-217 (265)
116 3paj_A Nicotinate-nucleotide p 42.4 2E+02 0.0068 26.6 10.7 36 80-119 235-270 (320)
117 3ble_A Citramalate synthase fr 42.1 54 0.0019 30.5 7.0 27 171-198 197-225 (337)
118 4avf_A Inosine-5'-monophosphat 41.8 2.6E+02 0.0089 27.3 13.8 92 33-129 243-362 (490)
119 1jcn_A Inosine monophosphate d 41.6 2.6E+02 0.009 27.3 12.6 85 40-129 281-388 (514)
120 3eez_A Putative mandelate race 40.3 93 0.0032 29.3 8.5 104 38-145 171-289 (378)
121 4e38_A Keto-hydroxyglutarate-a 40.2 77 0.0026 27.9 7.3 53 83-139 93-146 (232)
122 3jr2_A Hexulose-6-phosphate sy 40.1 1.7E+02 0.0059 24.8 10.2 95 43-140 47-163 (218)
123 2wm8_A MDP-1, magnesium-depend 39.4 1.4E+02 0.0049 24.2 8.8 19 67-85 73-91 (187)
124 1vrd_A Inosine-5'-monophosphat 39.3 2.6E+02 0.0088 27.2 11.9 22 102-123 343-364 (494)
125 4gib_A Beta-phosphoglucomutase 37.9 16 0.00054 32.0 2.5 19 67-85 121-139 (250)
126 3igs_A N-acetylmannosamine-6-p 37.9 89 0.003 27.3 7.4 58 67-128 38-108 (232)
127 2otd_A Glycerophosphodiester p 37.5 1.5E+02 0.0052 25.7 9.0 39 102-140 188-228 (247)
128 4a29_A Engineered retro-aldol 37.4 1.6E+02 0.0055 26.3 8.9 81 58-140 130-226 (258)
129 1o1z_A GDPD, glycerophosphodie 37.3 2E+02 0.0069 24.8 10.7 95 30-135 126-232 (234)
130 2o55_A Putative glycerophospho 37.3 1.7E+02 0.0056 25.7 9.3 101 33-137 143-253 (258)
131 3p6l_A Sugar phosphate isomera 37.2 1E+02 0.0035 26.8 7.9 50 171-233 62-111 (262)
132 3l0g_A Nicotinate-nucleotide p 37.2 48 0.0017 30.4 5.6 20 110-129 216-235 (300)
133 3niq_A 3-guanidinopropionase; 36.8 36 0.0012 31.6 4.8 103 89-195 169-284 (326)
134 3rcy_A Mandelate racemase/muco 36.7 1.3E+02 0.0044 29.0 9.0 102 38-144 185-305 (433)
135 1zfj_A Inosine monophosphate d 36.5 2.8E+02 0.0095 26.9 11.6 29 101-129 338-366 (491)
136 3lab_A Putative KDPG (2-keto-3 36.4 1.5E+02 0.0052 25.7 8.4 69 56-125 13-89 (217)
137 1ypf_A GMP reductase; GUAC, pu 36.4 1.9E+02 0.0064 26.7 9.8 22 102-123 213-234 (336)
138 3khj_A Inosine-5-monophosphate 35.6 2.8E+02 0.0095 25.9 11.0 16 82-97 152-167 (361)
139 3q58_A N-acetylmannosamine-6-p 35.4 89 0.003 27.3 7.0 59 67-129 38-109 (229)
140 3eeg_A 2-isopropylmalate synth 35.3 1.7E+02 0.0057 27.0 9.2 28 171-198 179-210 (325)
141 1vsq_C Mannose-specific phosph 34.9 1.3E+02 0.0044 24.8 7.5 79 71-151 50-149 (165)
142 1tx2_A DHPS, dihydropteroate s 34.8 2.6E+02 0.009 25.4 10.4 71 29-106 114-205 (297)
143 4e5t_A Mandelate racemase / mu 34.6 99 0.0034 29.5 7.7 100 39-143 191-309 (404)
144 1a0c_A Xylose isomerase; ketol 34.4 88 0.003 30.3 7.4 94 177-277 125-232 (438)
145 1vd6_A Glycerophosphoryl diest 34.3 2.2E+02 0.0074 24.3 12.7 105 18-134 111-220 (224)
146 1qap_A Quinolinic acid phospho 34.3 2.2E+02 0.0075 25.9 9.6 36 80-119 212-247 (296)
147 3gr7_A NADPH dehydrogenase; fl 34.2 2.1E+02 0.0073 26.4 9.8 51 134-197 202-252 (340)
148 1f76_A Dihydroorotate dehydrog 33.7 1.1E+02 0.0038 28.1 7.8 87 40-129 188-319 (336)
149 1aj0_A DHPS, dihydropteroate s 33.4 1.3E+02 0.0043 27.3 7.8 55 68-125 79-137 (282)
150 1nrz_A PTS system, sorbose-spe 33.4 91 0.0031 25.8 6.3 74 76-151 52-146 (164)
151 3qja_A IGPS, indole-3-glycerol 33.3 1.4E+02 0.0047 26.8 8.1 62 68-129 152-243 (272)
152 3mz2_A Glycerophosphoryl diest 33.1 2.5E+02 0.0084 25.3 9.9 90 45-139 169-277 (292)
153 3lhl_A Putative agmatinase; pr 32.7 1.8E+02 0.006 26.3 8.8 95 98-195 149-248 (287)
154 3nio_A Guanidinobutyrase; PA14 32.7 64 0.0022 29.8 5.8 101 90-194 173-286 (319)
155 1nvm_A HOA, 4-hydroxy-2-oxoval 32.5 64 0.0022 30.1 5.9 132 68-213 33-188 (345)
156 3tsm_A IGPS, indole-3-glycerol 32.0 1.4E+02 0.0049 26.8 7.9 62 68-129 159-250 (272)
157 1ble_A Fructose permease; phos 32.0 1.1E+02 0.0037 25.2 6.5 73 77-151 54-147 (163)
158 3u0h_A Xylose isomerase domain 32.0 48 0.0017 29.1 4.8 60 173-233 85-144 (281)
159 3m6y_A 4-hydroxy-2-oxoglutarat 31.9 1.6E+02 0.0055 26.1 7.7 87 113-215 173-270 (275)
160 3tdn_A FLR symmetric alpha-bet 31.6 1.2E+02 0.004 26.4 7.3 71 68-140 38-125 (247)
161 1pq3_A Arginase II, mitochondr 31.5 1.9E+02 0.0065 26.2 8.9 95 97-194 165-272 (306)
162 3q58_A N-acetylmannosamine-6-p 31.4 1.8E+02 0.0061 25.3 8.2 72 67-140 118-203 (229)
163 3p14_A L-rhamnose isomerase; T 30.3 3.7E+02 0.013 25.8 10.6 99 171-277 117-232 (424)
164 2dqw_A Dihydropteroate synthas 30.1 1.4E+02 0.0048 27.2 7.5 55 67-125 92-150 (294)
165 3bbn_B Ribosomal protein S2; s 29.9 2.2E+02 0.0076 24.9 8.5 63 15-81 23-91 (231)
166 2pgw_A Muconate cycloisomerase 29.9 3E+02 0.01 25.7 10.2 124 13-142 146-290 (384)
167 3b0p_A TRNA-dihydrouridine syn 29.6 3.1E+02 0.011 25.3 10.2 89 37-128 109-225 (350)
168 2xvc_A ESCRT-III, SSO0910; cel 29.3 18 0.0006 24.4 0.9 25 163-189 33-58 (59)
169 1yx1_A Hypothetical protein PA 28.7 94 0.0032 27.1 6.1 26 171-197 141-166 (264)
170 3gr7_A NADPH dehydrogenase; fl 28.5 2.5E+02 0.0085 26.0 9.2 93 42-139 197-323 (340)
171 1ydn_A Hydroxymethylglutaryl-C 28.4 2.1E+02 0.007 25.7 8.5 133 67-211 28-192 (295)
172 2pr7_A Haloacid dehalogenase/e 28.3 88 0.003 23.6 5.2 42 92-135 84-125 (137)
173 3i4k_A Muconate lactonizing en 28.2 2.8E+02 0.0095 26.0 9.7 104 38-145 176-297 (383)
174 4e4u_A Mandalate racemase/muco 28.2 2.2E+02 0.0074 27.1 9.0 101 39-143 184-302 (412)
175 3go2_A Putative L-alanine-DL-g 28.0 2.3E+02 0.0079 26.9 9.1 99 41-143 198-311 (409)
176 1bf6_A Phosphotriesterase homo 27.7 3E+02 0.01 23.9 9.9 58 70-128 143-208 (291)
177 1olt_A Oxygen-independent copr 27.5 1.2E+02 0.0042 29.3 7.2 49 38-86 119-174 (457)
178 1aj0_A DHPS, dihydropteroate s 27.1 3.4E+02 0.012 24.4 9.6 51 55-105 110-185 (282)
179 3ve9_A Orotidine-5'-phosphate 27.0 84 0.0029 27.2 5.2 58 68-127 118-179 (215)
180 1vhc_A Putative KHG/KDPG aldol 26.9 3E+02 0.01 23.6 16.1 51 85-139 78-129 (224)
181 3m0z_A Putative aldolase; MCSG 26.5 1.4E+02 0.0049 26.1 6.4 66 113-194 150-221 (249)
182 2cev_A Protein (arginase); enz 26.4 1.6E+02 0.0056 26.5 7.4 95 97-194 164-270 (299)
183 3rr1_A GALD, putative D-galact 26.2 2.1E+02 0.0073 27.1 8.5 101 40-144 162-280 (405)
184 4ab4_A Xenobiotic reductase B; 26.1 1.7E+02 0.0059 27.4 7.6 82 41-127 205-307 (362)
185 2z1c_A Hydrogenase expression/ 25.9 34 0.0012 24.4 2.0 14 366-379 33-46 (75)
186 4dwd_A Mandelate racemase/muco 25.9 2.3E+02 0.0077 26.8 8.6 18 172-189 279-296 (393)
187 2h9a_B CO dehydrogenase/acetyl 25.9 1.4E+02 0.0046 27.5 6.7 79 28-107 120-209 (310)
188 1p4c_A L(+)-mandelate dehydrog 25.9 2E+02 0.0068 27.1 8.1 78 43-128 214-307 (380)
189 2aeb_A Arginase 1; hydrolase, 25.6 2E+02 0.0068 26.3 7.9 94 98-194 170-276 (322)
190 1ep3_A Dihydroorotate dehydrog 25.6 3.6E+02 0.012 24.0 12.7 13 38-50 109-121 (311)
191 1vkf_A Glycerol uptake operon 25.3 2.4E+02 0.0082 23.8 7.6 71 34-131 109-180 (188)
192 3ru6_A Orotidine 5'-phosphate 25.2 75 0.0026 29.2 4.8 57 71-128 164-230 (303)
193 3bdk_A D-mannonate dehydratase 25.1 1E+02 0.0035 29.3 5.8 54 171-224 63-118 (386)
194 2j6v_A UV endonuclease, UVDE; 24.8 3.3E+02 0.011 24.6 9.2 89 172-277 103-197 (301)
195 3sbf_A Mandelate racemase / mu 24.8 1.8E+02 0.0061 27.6 7.6 100 39-142 184-301 (401)
196 2og9_A Mandelate racemase/muco 24.7 2.7E+02 0.0093 26.1 8.9 100 38-141 189-306 (393)
197 3tqv_A Nicotinate-nucleotide p 24.7 1.1E+02 0.0036 27.9 5.6 84 84-191 183-269 (287)
198 4g3h_A Arginase (ROCF); rossma 24.3 2.6E+02 0.0089 25.7 8.4 96 97-194 174-280 (330)
199 3vnd_A TSA, tryptophan synthas 24.3 2.1E+02 0.0072 25.5 7.5 36 162-205 185-221 (267)
200 3tfx_A Orotidine 5'-phosphate 24.2 97 0.0033 27.7 5.2 57 71-128 150-216 (259)
201 1tx2_A DHPS, dihydropteroate s 24.2 2E+02 0.007 26.1 7.5 56 68-126 104-164 (297)
202 2qgy_A Enolase from the enviro 24.2 3.1E+02 0.011 25.7 9.2 99 39-141 177-293 (391)
203 3i6e_A Muconate cycloisomerase 23.9 4.5E+02 0.015 24.5 10.9 103 39-145 176-295 (385)
204 2q5c_A NTRC family transcripti 23.6 84 0.0029 26.6 4.5 94 33-134 72-174 (196)
205 2e6f_A Dihydroorotate dehydrog 23.6 2.8E+02 0.0096 24.9 8.5 25 101-125 246-270 (314)
206 1r85_A Endo-1,4-beta-xylanase; 23.6 83 0.0028 29.8 4.9 56 172-235 212-271 (379)
207 3ozy_A Putative mandelate race 23.5 3.3E+02 0.011 25.6 9.2 102 38-143 177-297 (389)
208 2vp8_A Dihydropteroate synthas 23.4 2.4E+02 0.0084 25.9 7.9 55 68-126 105-165 (318)
209 1wbh_A KHG/KDPG aldolase; lyas 23.4 3.4E+02 0.012 23.1 8.5 96 38-140 26-129 (214)
210 3inp_A D-ribulose-phosphate 3- 23.3 2.1E+02 0.0071 25.2 7.2 15 37-51 37-51 (246)
211 3ddm_A Putative mandelate race 23.2 1.9E+02 0.0065 27.3 7.4 101 38-143 181-301 (392)
212 2nli_A Lactate oxidase; flavoe 23.0 4.6E+02 0.016 24.4 10.0 27 101-127 286-312 (368)
213 4fo4_A Inosine 5'-monophosphat 23.0 4.6E+02 0.016 24.5 9.9 55 86-142 110-172 (366)
214 4djd_D C/Fe-SP, corrinoid/iron 22.8 3.3E+02 0.011 25.1 8.6 51 58-108 160-217 (323)
215 2nx9_A Oxaloacetate decarboxyl 22.8 3.1E+02 0.011 26.7 8.9 27 171-198 186-213 (464)
216 1gox_A (S)-2-hydroxy-acid oxid 22.3 4.6E+02 0.016 24.4 9.9 82 45-129 216-310 (370)
217 2vp8_A Dihydropteroate synthas 22.2 4.6E+02 0.016 24.0 10.0 52 55-106 137-218 (318)
218 3noy_A 4-hydroxy-3-methylbut-2 22.2 2.1E+02 0.0071 26.9 7.1 26 171-197 119-144 (366)
219 1jub_A Dihydroorotate dehydrog 22.2 4.1E+02 0.014 23.8 9.3 27 101-127 244-270 (311)
220 3nav_A Tryptophan synthase alp 22.1 3E+02 0.01 24.5 8.1 29 172-205 194-223 (271)
221 3vni_A Xylose isomerase domain 21.9 3.9E+02 0.013 23.2 11.7 58 175-233 91-154 (294)
222 2p8b_A Mandelate racemase/muco 21.9 4.2E+02 0.014 24.4 9.6 104 38-145 167-289 (369)
223 3stp_A Galactonate dehydratase 21.8 3.4E+02 0.012 25.8 9.0 18 172-189 319-336 (412)
224 3lfj_A Manxb, phosphotransfera 21.8 2.1E+02 0.0071 24.2 6.5 73 77-151 74-168 (187)
225 1y0e_A Putative N-acetylmannos 21.7 2.7E+02 0.0094 23.4 7.7 62 68-129 107-205 (223)
226 3sl1_A Arginase; metallohydrol 21.6 3.3E+02 0.011 26.1 8.6 95 97-194 262-369 (413)
227 3ffs_A Inosine-5-monophosphate 21.6 5.2E+02 0.018 24.5 10.3 31 68-98 173-207 (400)
228 3hgj_A Chromate reductase; TIM 21.5 4.8E+02 0.016 24.0 10.9 83 42-128 205-318 (349)
229 3elf_A Fructose-bisphosphate a 21.4 1.8E+02 0.0063 27.1 6.7 39 99-137 246-285 (349)
230 3ovp_A Ribulose-phosphate 3-ep 21.4 3.8E+02 0.013 23.1 8.5 13 165-179 176-188 (228)
231 2qde_A Mandelate racemase/muco 21.3 4.9E+02 0.017 24.3 10.0 17 172-188 278-294 (397)
232 1nu5_A Chloromuconate cycloiso 21.2 3.9E+02 0.013 24.6 9.2 101 39-142 171-288 (370)
233 3ch0_A Glycerophosphodiester p 21.0 72 0.0025 28.3 3.7 74 67-140 177-257 (272)
234 2ovl_A Putative racemase; stru 21.0 2.4E+02 0.0083 26.2 7.7 99 38-141 173-290 (371)
235 2pp0_A L-talarate/galactarate 21.0 3.5E+02 0.012 25.4 8.9 122 14-142 175-320 (398)
236 3ayv_A Putative uncharacterize 20.9 2.9E+02 0.0098 23.6 7.8 90 176-277 40-137 (254)
237 1w8s_A FBP aldolase, fructose- 20.8 3.7E+02 0.013 23.7 8.5 94 112-224 45-139 (263)
238 4dye_A Isomerase; enolase fami 20.6 2.6E+02 0.009 26.4 7.9 100 38-142 195-310 (398)
239 1woh_A Agmatinase; alpha/beta 20.6 4.7E+02 0.016 23.5 9.5 91 101-194 175-273 (305)
240 2r14_A Morphinone reductase; H 20.5 1.9E+02 0.0064 27.3 6.7 81 42-127 219-327 (377)
241 4dbe_A Orotidine 5'-phosphate 20.4 1.1E+02 0.0039 26.4 4.8 58 68-127 125-186 (222)
242 1uhe_A Aspartate 1-decarboxyla 20.4 43 0.0015 25.1 1.7 59 343-408 29-87 (97)
243 1vhc_A Putative KHG/KDPG aldol 20.0 4.2E+02 0.014 22.7 8.6 106 11-128 27-137 (224)
244 3t6c_A RSPA, putative MAND fam 20.0 1.9E+02 0.0064 27.9 6.7 100 39-143 223-341 (440)
No 1
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00 E-value=7.5e-76 Score=586.94 Aligned_cols=387 Identities=40% Similarity=0.691 Sum_probs=335.4
Q ss_pred eeEEEeeccccHHHHHHHHHhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcE
Q 015304 4 QRVTTVVTKEELTEFVRSTILKR--QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNF 81 (409)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~ 81 (409)
.++.-++...+++++|++++.+. ++.+| |+|+||+++|++|+++|++++|+++++||+|||+++.|++.+.+.|+||
T Consensus 9 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t-P~~v~dl~~l~~n~~~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~ 87 (424)
T 7odc_A 9 FDCHILDEGFTAKDILDQKINEVSSSDDKD-AFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGF 87 (424)
T ss_dssp EEEEEECSSCCHHHHHHHHHC------CCC-CEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEE
T ss_pred ccEEEecCCCCHHHHHHHHHhhcccCCCCC-cEEEeeHHHHHHHHHHHHHhCCCCeEEEEeccCCcHHHHHHHHHcCCcE
Confidence 35666777899999999999876 34799 9999999999999999999999999999999999999999999999999
Q ss_pred EEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCC
Q 015304 82 DCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPL 161 (409)
Q Consensus 82 ~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~ 161 (409)
+|+|.+|++.++++|+++++|+|+||+|++++|+.|+++|+..++|||++||++|.+.+++.+++||||++.. ......
T Consensus 88 dvaS~~E~~~~~~~G~~~~~Ii~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRvn~~~~-~~~~~~ 166 (424)
T 7odc_A 88 DCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDS-KAVCRL 166 (424)
T ss_dssp EECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC----------
T ss_pred EECCHHHHHHHHHcCCChhhEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEECCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999976799999999999999999999999998532 222334
Q ss_pred CCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC
Q 015304 162 DSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS 241 (409)
Q Consensus 162 ~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~ 241 (409)
++|||++ ++++.++++.+++.++++.|||||+||++.+.+.|.++++++.++++.+++.|+ ++++||+||||++.+.
T Consensus 167 ~skfG~~--~~~~~~~~~~~~~~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G~-~~~~ldiGGG~~~~~~ 243 (424)
T 7odc_A 167 SVKFGAT--LKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF-SMHLLDIGGGFPGSED 243 (424)
T ss_dssp --CCCBC--HHHHHHHHHHHHHTTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTC-CCCEEECCCCCCCSSS
T ss_pred CCCCCCC--HHHHHHHHHHHHhCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEeCCCcCCCCC
Confidence 5999999 999999999888889999999999999999999999999999999998899998 9999999999998765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeC--------------CeeEEEEe
Q 015304 242 NTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHG--------------EMRNYWIN 307 (409)
Q Consensus 242 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g--------------~~~~~~i~ 307 (409)
..++++++++.|++.++++|+.. ++++|++|||||++++||+|+|+|+++|+.. ..++|+++
T Consensus 244 ~~~~~~~~a~~i~~~~~~~~~~~----~~~~ii~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~i~ 319 (424)
T 7odc_A 244 TKLKFEEITSVINPALDKYFPSD----SGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVN 319 (424)
T ss_dssp SSSCHHHHHHHHHHHHHHHSCGG----GTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHHhccc----CCcEEEECCCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEEEe
Confidence 56799999999999999998632 3578999999999999999999999999743 14678999
Q ss_pred CCcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCcccccc
Q 015304 308 DGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRAR 387 (409)
Q Consensus 308 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ 387 (409)
+|+++++++.+|+++++.|....... ...+.++++|+||+|+++|++.+++.||++++||||+|.++|||+++|
T Consensus 320 ~g~~~~~~~~ly~~~~~~p~~~~~~~------~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ 393 (424)
T 7odc_A 320 DGVYGSFNCILYDHAHVKALLQKRPK------PDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAA 393 (424)
T ss_dssp CCTTTTTHHHHHSCCCCCCEESSCCC------TTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGG
T ss_pred CCcCCChhhHhhccCccceeeecCCC------CCCCeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhh
Confidence 99999999999998875432222111 112457899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcEEEEEec
Q 015304 388 GTNFNGYNTAAIPTYVVR 405 (409)
Q Consensus 388 ~~~fn~~~~p~~v~~~~~ 405 (409)
+|+||++++|+++++..+
T Consensus 394 ss~fN~~~~p~~v~~~~~ 411 (424)
T 7odc_A 394 ASTFNGFQRPNIYYVMSR 411 (424)
T ss_dssp CCCGGGCCCCEEEEEEEH
T ss_pred ccCCCCCCCCeEEEEEcc
Confidence 999999999987766543
No 2
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00 E-value=2e-70 Score=553.99 Aligned_cols=385 Identities=41% Similarity=0.695 Sum_probs=338.8
Q ss_pred eEEEeeccccHHHHHHHHHhhc--CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEE
Q 015304 5 RVTTVVTKEELTEFVRSTILKR--QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFD 82 (409)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~ 82 (409)
++.-++...++.++|++.+.+. ++.+| |+|+||+++|++|+++|++++++++++||+|||+++.|++++.+.|.||+
T Consensus 20 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~t-P~~viDl~~l~~n~~~l~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~d 98 (471)
T 2oo0_A 20 DCHFLDEGFTAKDILDQKINEVSSSDDKD-AFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFD 98 (471)
T ss_dssp CEEEECTTCCHHHHHHHHHHHTTTSSCCC-CEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEE
T ss_pred cEEEecCCCCHHHHHHHHHHhhhcCCCCC-cEEEEEHHHHHHHHHHHHHhCCCCeEEEEEeeCCCHHHHHHHHHcCCcEE
Confidence 4666788889999999999886 45899 99999999999999999999998999999999999999999999999999
Q ss_pred EcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCC
Q 015304 83 CASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLD 162 (409)
Q Consensus 83 vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~ 162 (409)
|+|.+|++.++++|+++++|+|+||.|++++++.|+++|+..++|||++||++|.+.+++.+|+||||++.. .......
T Consensus 99 vaS~~E~~~~~~aG~~~~~iv~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~V~lRvn~g~~-~~~~~~~ 177 (471)
T 2oo0_A 99 CASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDS-KAVCRLS 177 (471)
T ss_dssp ECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEECCCCT-TSSBCCT
T ss_pred EeCHHHHHHHHHcCCChhhEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHhCCCCeEEEEEcCCCC-CCCCCCC
Confidence 999999999999999999999999999999999999999966899999999999999888999999998643 2233346
Q ss_pred CCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC
Q 015304 163 SKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN 242 (409)
Q Consensus 163 srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~ 242 (409)
+|||++ .+++.++++.+++.++++.|+|||+||++.+.+.|.++++++..+++.+++.|+ .+++||+||||++.+..
T Consensus 178 ~RfG~~--~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~~~~G~-~~~~ldiGGG~~~~~~~ 254 (471)
T 2oo0_A 178 VKFGAT--LRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGF-SMYLLDIGGGFPGSEDV 254 (471)
T ss_dssp TTSCBC--HHHHHHHHHHHHHTTCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTC-CCCEEECCCCCCSSSSS
T ss_pred CCCCCC--HHHHHHHHHHHHhCCCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCCEEEECCCcCCCCCC
Confidence 999999 899999999887779999999999999998889999999999889998999998 99999999999887666
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeC--------------CeeEEEEeC
Q 015304 243 TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHG--------------EMRNYWIND 308 (409)
Q Consensus 243 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g--------------~~~~~~i~~ 308 (409)
.++++++++.|++++.+|++.. ++.++++||||+++++||+|+++|+++|+.. ...+|.+++
T Consensus 255 ~~~~~~~~~~i~~~l~~~~p~~----~~~~li~EpGR~~v~~ag~l~t~V~~vK~~~~~~v~y~~~~~~~~~~~~~~i~~ 330 (471)
T 2oo0_A 255 KLKFEEITGVINPALDKYFPSD----SGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVND 330 (471)
T ss_dssp SSCHHHHHHHHHHHHHHHSCGG----GTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESC
T ss_pred CCCHHHHHHHHHHHHHHHhccc----CCcEEEecCccceecCcEEEEEEEEEEEecCccccccccccccCCceEEEEEEC
Confidence 6789999999999999997531 3477999999999999999999999999853 135677999
Q ss_pred CcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccC
Q 015304 309 GKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARG 388 (409)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~ 388 (409)
|+++++++.+|+.+++.+..+.... ...+.++++|+||+||++|+++.++.+|++++||+|+|.++|||+++|+
T Consensus 331 G~~~~~~~~L~~~~~~~~vl~~~~~------~~~~~~~~~I~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~s~~ 404 (471)
T 2oo0_A 331 GVYGSFNCILYDHAHVKPLLQKRPK------PDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAA 404 (471)
T ss_dssp CTTTGGGHHHHSCCCCCCEESSCCC------TTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGC
T ss_pred CcccchhhHhhccCcceeeeccCCC------CCCCeeEEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchhhhh
Confidence 9999999999988765432222210 1113478999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEe
Q 015304 389 TNFNGYNTAAIPTYVV 404 (409)
Q Consensus 389 ~~fn~~~~p~~v~~~~ 404 (409)
|+||++++|+++++..
T Consensus 405 s~fN~~~~p~~v~~~~ 420 (471)
T 2oo0_A 405 STFNGFQRPTIYYVMS 420 (471)
T ss_dssp CCGGGCCCCEEEEEEE
T ss_pred ccccCCCCCeEEEEec
Confidence 9999999997766543
No 3
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=1.8e-70 Score=550.60 Aligned_cols=355 Identities=22% Similarity=0.346 Sum_probs=312.2
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCC--cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEe
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLPM--IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~--~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~ 105 (409)
+++| |+|+||+++|++|+++|++.+++ ++++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|+++++|+|+
T Consensus 46 ~~~t-P~~vid~~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~I~~~ 124 (443)
T 3vab_A 46 AVGT-PFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQAVLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFS 124 (443)
T ss_dssp HHCS-SEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEEE
T ss_pred hcCC-CEEEEEHHHHHHHHHHHHHhhccCCcEEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCChhhEEEc
Confidence 5689 99999999999999999999985 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCC--CCCCCCCC---CCcCCCCCcccHHH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDD--SGAKHPLD---SKYGVDHHPQEIVP 176 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~--~~~~~~~~---srfGi~~~~~~~~~ 176 (409)
||+|++++++.|+++|+..++|||++|+++|.+.+ +..+|+||||++.+ .+..++++ +|||++ ++++.+
T Consensus 125 g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~--~~e~~~ 202 (443)
T 3vab_A 125 GVGKTPREMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIP--RDKARA 202 (443)
T ss_dssp CTTCCHHHHHHHHHHTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEECCBCTTTCCBC---CCCCSSSEE--GGGHHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCcccccCCCCCCCcCC--HHHHHH
Confidence 99999999999999999768999999999998764 34789999998643 35566665 799999 999999
Q ss_pred HHHHHHHc-CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCC----CCHHHHHH
Q 015304 177 LLEAAEAS-GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNT----KSFQEAAS 251 (409)
Q Consensus 177 ~~~~~~~~-~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~----~~~~~~~~ 251 (409)
+++.+++. ++++.|||||+||+..+.+.|.++++++.++++.+++.|+ ++++||+||||+++|..+ ++++++++
T Consensus 203 ll~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~G~-~l~~ldiGGG~~i~y~~~~~~~~~~~~~~~ 281 (443)
T 3vab_A 203 AYARAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGH-NIRHVDVGGGLGIPYRTPNTPPPPPVAYAQ 281 (443)
T ss_dssp HHHHHHHSTTEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCCCBCCCCCCC---CCCHHHHHH
T ss_pred HHHHHhhCCCceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCCEEEeCCCcccCcCCCCCCCCCHHHHHH
Confidence 99988774 7999999999999988999999999999999988888898 999999999999998643 58999999
Q ss_pred HHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccccc
Q 015304 252 IIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTL 331 (409)
Q Consensus 252 ~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~ 331 (409)
.|++.+.++ +++|++|||||++++||+|+|+|+++|+.++..++++|.|++..++|.+|+.++.. .++..
T Consensus 282 ~i~~~~~~~---------~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vD~gm~~~~rp~ly~~~~~~-~~~~~ 351 (443)
T 3vab_A 282 IVAKHIKPL---------GLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIVDAAMNDLIRPTLYDAFHDI-RPVIM 351 (443)
T ss_dssp HHHHHHGGG---------CSEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHHHCCCCCE-EESBC
T ss_pred HHHHHHHhc---------CCEEEEecCHHHhhcccEEEEEEEEEEecCCeeEEEEccccccccchHHhCcccee-EEccc
Confidence 999888764 25799999999999999999999999987555667778888888888899887643 23322
Q ss_pred ccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 332 ASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
.. .+ .+..+++|+||+|+++|++.+++.||++++||+|+|.++|||+++|+|+||++|+|++|++
T Consensus 352 ~~-----~~-~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v 416 (443)
T 3vab_A 352 PN-----DN-APRIRADFVGPVCETGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPEVLG 416 (443)
T ss_dssp CC-----TT-SCEEEEEEECSSSSTTCEEEEEEEEECCCTTCEEEEESCTTTTGGGCCCGGGCCCCCEEEE
T ss_pred CC-----CC-CCceEEEEEccCCCCCCEEeeccCcCCCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEE
Confidence 10 01 2457899999999999999999999999999999999999999999999999999988765
No 4
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00 E-value=1.3e-69 Score=545.91 Aligned_cols=382 Identities=37% Similarity=0.629 Sum_probs=325.4
Q ss_pred eEEEeeccccHHHHHHHHHhhc-CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEE
Q 015304 5 RVTTVVTKEELTEFVRSTILKR-QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDC 83 (409)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~v 83 (409)
+|+-++...++.++|++.+.+. ...+| |+|+||+++|++|+++|++++++++++||+|||+++.|++++.+.|.||+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t-P~~vid~~~l~~n~~~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~~v 89 (448)
T 3btn_A 11 SVGLLDEGTNLGNVIDNYVYEHTLTGKN-AFFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFAC 89 (448)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHSSCC-CEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHHTCEEEE
T ss_pred eEEEecCCCcHHHHHHHHHHhcccCCCC-CEEEEeHHHHHHHHHHHHHhCCCCeEEEEeeeCCCHHHHHHHHHcCCcEEE
Confidence 4566788899999999999876 55899 999999999999999999999989999999999999999999999999999
Q ss_pred cCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCC
Q 015304 84 ASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDS 163 (409)
Q Consensus 84 aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~s 163 (409)
+|.+|++.++++|+++++|+|+||.|++++++.|+++|+..+++||++||+++.+.+++.+|+||||++.+. ......+
T Consensus 90 aS~~E~~~~~~aG~~~~~iv~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRin~g~~~-~~~~~~~ 168 (448)
T 3btn_A 90 SSKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATEDNI-GGEDGNM 168 (448)
T ss_dssp SSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCC---------C
T ss_pred eCHHHHHHHHHcCCChhhEEEcCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHhCCCCeEEEEEecCCCc-cCCCCCC
Confidence 999999999999999999999999999999999999999668999999999999988889999999985432 2233469
Q ss_pred CcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCC
Q 015304 164 KYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNT 243 (409)
Q Consensus 164 rfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~ 243 (409)
|||++ ++++.++++.+++.++++.|||||+||++.+.+.|.++++++..+++.+++.|+ ++++||+||||+..+
T Consensus 169 RfG~~--~~~~~~~~~~~~~~~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~~~~~G~-~~~~ldiGGG~~~~~--- 242 (448)
T 3btn_A 169 KFGTT--LKNCRHLLECAKELDVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGF-TMNMLDIGGGFTGTE--- 242 (448)
T ss_dssp CCCBC--HHHHHHHHHHHHHHTCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTC-CCCEEECCSCCCSCH---
T ss_pred cCCCC--HHHHHHHHHHHHhCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCCEEEeCCCcCCCC---
Confidence 99999 899999998887779999999999999988888899999999889998899998 999999999995432
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeC--------------C-eeEEEEeC
Q 015304 244 KSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHG--------------E-MRNYWIND 308 (409)
Q Consensus 244 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g--------------~-~~~~~i~~ 308 (409)
++++++++.|++++.+|++.. ++.++++||||+++++||+|+|+|+++|+.. . ..+|.+++
T Consensus 243 ~~~~~~~~~v~~~i~~~~p~~----~~~~l~~EpGR~~v~~ag~l~t~V~~vK~~~~g~~vsyg~~~~~~~~~~~~~i~~ 318 (448)
T 3btn_A 243 IQLEEVNHVISPLLDIYFPEG----SGIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMND 318 (448)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT----SCCEEEECCSHHHHTTTEEEEEEEEEEEEC-----------------CEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHhccc----CCcEEEEeCCcceeeeeEEEEEEEEEEEecccccccccccccccCCceEEEEEcc
Confidence 468999999999999997532 2467999999999999999999999999842 1 23567888
Q ss_pred CcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccC
Q 015304 309 GKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARG 388 (409)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~ 388 (409)
|++.++++.+|+.+++.+..+.... ...+.++++|+||+||++|+++.++.+|++++||+|+|.++|||+++|+
T Consensus 319 G~~d~~~~~l~~~~~~~~vl~~~~~------~~~~~~~~~v~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~~~~ 392 (448)
T 3btn_A 319 GVYGSFASKLSEDLNTIPEVHKKYK------EDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEP 392 (448)
T ss_dssp CTTTTTGGGGC----CCCEECCC-----------CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCC
T ss_pred ccccccchhhhccCcceeeeccCCC------CCCCceEEEEECCCCCCCCEEeeccccCCCCCCCEEEEcCCCCCchhhc
Confidence 9999999999988765422222110 0113467999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEe
Q 015304 389 TNFNGYNTAAIPTYVV 404 (409)
Q Consensus 389 ~~fn~~~~p~~v~~~~ 404 (409)
|+||++++|+++++..
T Consensus 393 s~fN~~~~p~~v~~~~ 408 (448)
T 3btn_A 393 SAFNDFQRPAIYFMMS 408 (448)
T ss_dssp CGGGTTCCCEEEEEEE
T ss_pred ccccCCCCCeEEEEEc
Confidence 9999999997766544
No 5
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00 E-value=7.2e-69 Score=537.72 Aligned_cols=380 Identities=40% Similarity=0.718 Sum_probs=325.6
Q ss_pred ccccHHHHHHHHHhhc-CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHH
Q 015304 11 TKEELTEFVRSTILKR-QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEI 89 (409)
Q Consensus 11 ~~~~~~~~~~~~~~~~-~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~ 89 (409)
...+++++|++++.+. .+++| |+|+||+++|++|+++|++.+|+++++|++|||+++.|++.+.+.|.||+|+|.+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~t-P~~vidl~~l~~n~~~~~~~~~~~~~~~avKAn~~~~v~~~l~~~G~g~~vas~~E~ 95 (425)
T 1f3t_A 17 EGFNTRDALCKKISMNTCDEGD-PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEI 95 (425)
T ss_dssp CCSSHHHHHHHHCC------CC-CEEEEEHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHH
T ss_pred cCCcHHHHHHHHHHhcccCCCC-cEEEEeHHHHHHHHHHHHHhCCCCeEEEEeeeCCCHHHHHHHHHcCCcEEEeCHHHH
Confidence 6678899999999876 56899 999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCC
Q 015304 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDH 169 (409)
Q Consensus 90 ~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~ 169 (409)
+.++++|+++++|+|+||.|++++++.|+++|+..++|||++|+++|.+.+++.+++||||++.. .......+|||++
T Consensus 96 ~~~~~~G~~~~~iv~~g~~k~~~~l~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lrid~g~~-~~~~~~~~RfG~~- 173 (425)
T 1f3t_A 96 QRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDS-LARCRLSVKFGAK- 173 (425)
T ss_dssp HHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-----------CCSCBC-
T ss_pred HHHHHcCCChhhEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCcEEEEEcCCCC-CccCCCCCcCCCC-
Confidence 99999999999999999999999999999999965899999999999999888999999998532 2233346899999
Q ss_pred CcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHH
Q 015304 170 HPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEA 249 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~ 249 (409)
++++.++++.+++.++++.|+|+|+||++.+.+.|.++++++..+++.+++.|+ .++++|+||||++.+...++++++
T Consensus 174 -~~~~~~~~~~~~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~l~iGGG~~~~~~~~~~~~~~ 251 (425)
T 1f3t_A 174 -VEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGF-NMHILDIGGGFPGTRDAPLKFEEI 251 (425)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCCCCCSSTTSSSCHHHH
T ss_pred -HHHHHHHHHHHHhCCCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCCEEEeCCCcCCCCCCCCCHHHH
Confidence 899999999887779999999999999998888998899998888998889998 999999999998876556789999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeC--------------CeeEEEEeCCcCCCcc
Q 015304 250 ASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHG--------------EMRNYWINDGKYGSFD 315 (409)
Q Consensus 250 ~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g--------------~~~~~~i~~g~~~~~~ 315 (409)
++.|++++.+|++.. ++.++++||||+++++||+|+|+|+++|+.. ..++|++++|++.+++
T Consensus 252 ~~~vr~~i~~~~~~~----~~~~l~~EpGR~~v~~a~~l~t~V~~vK~~~~g~~~v~g~~~~~~~~~~~~i~~G~~d~~~ 327 (425)
T 1f3t_A 252 AGVINNALEKHFPPD----LKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFN 327 (425)
T ss_dssp HHHHHHHHHHHSCCC----TTCEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEEESCCTTTGGG
T ss_pred HHHHHHHHHHhcCcC----CCcEEEEeCCceeeeeeEEEEEEEEEEEeccccccccccccccCcceEEEEEeccccccch
Confidence 999999999997532 3578999999999999999999999999842 1357889999999999
Q ss_pred ccccccccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCC
Q 015304 316 WVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYN 395 (409)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~ 395 (409)
+.+|+.+++.+..+.... ...+.++++|+||+||++|+++.++.+|++++||+|+|.++|||+++|+|+||+++
T Consensus 328 ~~l~~~~~~~~vl~~~~~------~~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~s~~s~fn~~~ 401 (425)
T 1f3t_A 328 CILYDHAVVRPLPQREPI------PNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQ 401 (425)
T ss_dssp HHHHSCCCCCCEECSCCC------TTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCC
T ss_pred hhhhcccccceeeecCCC------CCCCeeEEEEEcCCcCCCCEecccccCCCCCCCCEEEEcCCCCCchhhcccccCCC
Confidence 999988765432222110 11134789999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecC
Q 015304 396 TAAIPTYVVRS 406 (409)
Q Consensus 396 ~p~~v~~~~~~ 406 (409)
+| .++|+.+.
T Consensus 402 ~p-~v~~~~~~ 411 (425)
T 1f3t_A 402 SP-TIYYVVSG 411 (425)
T ss_dssp CC-EEEEECCS
T ss_pred CC-EEEEEeCc
Confidence 99 55665443
No 6
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=2.5e-69 Score=542.09 Aligned_cols=353 Identities=24% Similarity=0.331 Sum_probs=302.1
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCC--cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEe
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLPM--IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~--~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~ 105 (409)
+++| |+|+||+++|++|+++|++++++ ++++||+|||+++.|++.+.+.|+||+|+|.+|++.++++|+++++|+|+
T Consensus 49 ~~~T-P~~vidl~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~I~~~ 127 (441)
T 3n2b_A 49 QYGT-PLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFS 127 (441)
T ss_dssp HHCS-SEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEEC
T ss_pred hcCC-CEEEEEHHHHHHHHHHHHHhhccCCcEEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCcccEEEc
Confidence 4689 99999999999999999999985 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC--CCCCCCC---CCcCCCCCcccHHH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDS--GAKHPLD---SKYGVDHHPQEIVP 176 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~--~~~~~~~---srfGi~~~~~~~~~ 176 (409)
||+|++++++.|+++|+..++|||++|+++|.+.+ +..+|+||||++.+. |.+++++ +|||++ ++++.+
T Consensus 128 g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~--~~~~~~ 205 (441)
T 3n2b_A 128 GVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGIT--FDRAAQ 205 (441)
T ss_dssp CTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBC--GGGHHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHhcCCCcEEEEEeccCCCcCCCcccccCCCCCcccCC--HHHHHH
Confidence 99999999999999999768999999999998763 568999999986432 3344554 899999 999999
Q ss_pred HHHHHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC--CCCHHHHHHHH
Q 015304 177 LLEAAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN--TKSFQEAASII 253 (409)
Q Consensus 177 ~~~~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~--~~~~~~~~~~i 253 (409)
+++.+++ +++++.|||||+||+..+.+.|.++++++.++++.+++.|+ ++++||+||||+++|.. .++++++++.|
T Consensus 206 ~~~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~G~-~l~~LdiGGG~gi~y~~~~~~~~~~~~~~i 284 (441)
T 3n2b_A 206 VYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGI-HIRHLDVGGGLGVVYRDELPPQPSEYAKAL 284 (441)
T ss_dssp HHHHHHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCSCCCEEC-----CEECHHHHHH
T ss_pred HHHHHhcCCCeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCCEEEECCCcccCCCCCCCCCHHHHHHHH
Confidence 9998877 58999999999999999999999999999999998888898 99999999999999854 35788999999
Q ss_pred HHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccccccccccccc
Q 015304 254 KEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLAS 333 (409)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~ 333 (409)
++.+++++ +++|++|||||++++||+|+|+|+++|+.++..++++|.|++..++|.+|+.++.. .|+...
T Consensus 285 ~~~l~~~~--------~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vD~gm~~~~rp~ly~~~~~~-~~~~~~- 354 (441)
T 3n2b_A 285 LDRLERHR--------DLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDI-IPLRPR- 354 (441)
T ss_dssp HHHHTTTC--------CSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC-------CCE-EESSCC-
T ss_pred HHHHHhcc--------CCEEEEeCCHHHHhhccEEEEEEEEEEecCCceEEEEccccccccchHHhCcccce-EEccCC-
Confidence 88887642 36799999999999999999999999986555566788888888888899876642 233221
Q ss_pred ccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 334 SLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 334 ~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
+ .+..+++|+||+|+++|++.+++.| ++++||||+|.++|||+++|+|+||++|+|++|++
T Consensus 355 ------~-~~~~~~~v~Gp~C~s~D~l~~~~~l-~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v 415 (441)
T 3n2b_A 355 ------Q-GEAQTYDLVGPVCETSDFLGKDRDL-VLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV 415 (441)
T ss_dssp ------S-SCCEEEEEECSSSSTTCEEEEEEEE-CCCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEE
T ss_pred ------C-CCceeEEEECCcCCCCCEEeecccc-CCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEE
Confidence 1 1457899999999999999999888 79999999999999999999999999999987754
No 7
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00 E-value=4.3e-67 Score=516.87 Aligned_cols=369 Identities=35% Similarity=0.637 Sum_probs=321.8
Q ss_pred HHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCC
Q 015304 17 EFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALG 96 (409)
Q Consensus 17 ~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G 96 (409)
.++++.+.....++| |+++||+++|++|+++|++.+++++++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|
T Consensus 3 ~~~~~l~~~~~~~~t-P~~vidl~~l~~N~~~l~~~~~~~~~~~~vKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G 81 (372)
T 2nva_A 3 SVVNNILKAHPHQTK-SFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIG 81 (372)
T ss_dssp HHHHHHHHHCTTCCS-EEEEECHHHHHHHHHHHHHHCTTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCC-CEEEEeHHHHHHHHHHHHHhCCCCeEEEEeeeCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcC
Confidence 456777766556899 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHH
Q 015304 97 VSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVP 176 (409)
Q Consensus 97 ~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~ 176 (409)
+++++|+++||.|++++++.|+++|+..++|||.+|+++|.+.+++.++.|||+++.+ +..+++++|||++ ++++.+
T Consensus 82 ~~~~~I~~~~~~k~~~~l~~a~~~~v~~~~vds~~~l~~l~~~~~~~~v~lrv~~~~~-~~~~~~~~R~G~~--~~~~~~ 158 (372)
T 2nva_A 82 VSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRCDDP-NATVQLGNKFGAN--EDEIRH 158 (372)
T ss_dssp CCGGGEEECCSCCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCCCCT-TCSBCCTTTSSBC--GGGHHH
T ss_pred CCHHHEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEEecCCC-CCcccCCCCCCCC--HHHHHH
Confidence 9988999999999999999999999965799999999999999888899999999654 5677788999999 999999
Q ss_pred HHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHH
Q 015304 177 LLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEA 256 (409)
Q Consensus 177 ~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~ 256 (409)
+++.+++.++++.|+|+|+||++.+.+.+.++++++.++++.+++.|+ +++++|+||||+++|...++++.+++.++++
T Consensus 159 ~~~~~~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~GGg~~~~~~~~~~~~~~~~~vr~~ 237 (372)
T 2nva_A 159 LLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGH-KPYILDIGGGLHADIDEGELSTYMSDYINDA 237 (372)
T ss_dssp HHHHHHHTTCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTC-CCCEEECCSCBCCCCC---CCCHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEeCCCCCcCCCCCCCHHHHHHHHHHH
Confidence 999887779999999999999988888888899999888888888898 8999999999999873345678899999999
Q ss_pred HHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccccccc
Q 015304 257 LHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLT 336 (409)
Q Consensus 257 l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (409)
+..|++.. ..++++||||++++++++++|+|+++|+..+.+.++++.|++.++.+.+|+.+++.+..+....
T Consensus 238 i~~y~~~~-----~~~~~~epGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~~~~v~~~~~~--- 309 (372)
T 2nva_A 238 IKDFFPED-----TVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVP--- 309 (372)
T ss_dssp HHHHCCCT-----TCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTTCTHHHHSCCCCCCEESSCCC---
T ss_pred HHHhcCcC-----CCEEEEccChhHhhceEEEEEEEEEEEEeCCcEEEEECCCccccchHhhhcccCccceeccCcc---
Confidence 99996531 2569999999999999999999999998755667888999999998888876653111121100
Q ss_pred cCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEE
Q 015304 337 TSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 337 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
...+.++++|+|++||++|+++.++.+|++++||+|+|+++|||+++|+++||++++|++++
T Consensus 310 ---~~g~~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~~~fn~~~~p~~~~ 371 (372)
T 2nva_A 310 ---DDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYY 371 (372)
T ss_dssp ---TTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEEE
T ss_pred ---CCCCcceEEEEeCCcCCCCEEcccccCCCCCCCCEEEEcCCCCCchhhhccccCCCCCcEEe
Confidence 01123789999999999999999999999999999999999999999999999999996654
No 8
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=100.00 E-value=7.9e-67 Score=512.57 Aligned_cols=334 Identities=15% Similarity=0.167 Sum_probs=276.2
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++| |+||||+++|++|+++|++.++ +++++||+|||+++.|++.|.+.|+||||+|.+|++.+++. + +.+|++.|
T Consensus 2 ~gt-P~yv~d~~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~E~~~~~~~-~-~~~ii~~~ 78 (365)
T 3mt1_A 2 IET-PYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRER-F-GKETHAYS 78 (365)
T ss_dssp CCS-SEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHTTTSCEEEESSHHHHHHHHHH-T-CSEEEEEE
T ss_pred CCC-CEEEEeHHHHHHHHHHHHHHHhhcCCEEEEEehhcCCHHHHHHHHHhCCeEEECCHHHHHHHHhh-C-CCceEEEC
Confidence 589 9999999999999999999884 79999999999999999999999999999999999999985 7 47999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCC--CCCCCCCC---CCcCCCCCcccHHHHHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDD--SGAKHPLD---SKYGVDHHPQEIVPLLEAA 181 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~--~~~~~~~~---srfGi~~~~~~~~~~~~~~ 181 (409)
|+|++++|+.|++.|+. +++||++||++|.+.+++.+++|||||+.+ .|.+++|+ +|||++ .+++.+.
T Consensus 79 ~~k~~~el~~a~~~g~~-i~vds~~el~~l~~~a~~~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~--~~~~~~~---- 151 (365)
T 3mt1_A 79 VAYGDNEIDEVVSHADK-IIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEW--DVPKVER---- 151 (365)
T ss_dssp SCCCTTTHHHHHHHCSE-EEESSHHHHHHHGGGGTTSEEEEEECCC----------------CCSBC--CHHHHHT----
T ss_pred CCCCHHHHHHHHHcCCE-EEECCHHHHHHHHHHhccCCEEEEEecCCCCCCCccccCCCCCCcCCCC--HHHHhhh----
Confidence 99999999999999984 899999999999999988999999998653 35566665 899999 8877652
Q ss_pred HHcCC-eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhh
Q 015304 182 EASGL-SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAY 260 (409)
Q Consensus 182 ~~~~l-~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~ 260 (409)
.+ ++.|||||+||+..+.+.|.++++.+.++++ +.|+ ++++||+||||+++|. .++++++++.|++.+.++
T Consensus 152 ---~l~~~~Glh~HigSq~~~~~~~~~~~~~~~~~~~---~~g~-~~~~ldiGGG~~i~y~-~~~~~~~~~~i~~~~~~~ 223 (365)
T 3mt1_A 152 ---VMDRINGFMIHNNCENKDFGLFDRMLGEIEERFG---ALIA-RVDWVSLGGGIHFTGD-DYPVDAFSARLRAFSDRY 223 (365)
T ss_dssp ---TGGGCSEEEECCC--CCSHHHHHHHHHHHHHHHH---HHHT-TSSEEECCSCCCTTST-TCCHHHHHHHHHHHHHHH
T ss_pred ---ccCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHH---HhCC-CCCEEEeCCCcCCCCC-CCCHHHHHHHHHHHHHHh
Confidence 33 7999999999999999999888877765543 3466 8999999999999875 578999999999988877
Q ss_pred CCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccccccccCCC
Q 015304 261 FPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKG 340 (409)
Q Consensus 261 ~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (409)
+++|++|||||++++||+|+|+|+++|+. +.+++++|+|+++.++..+...+ +|. +.. +
T Consensus 224 ---------~~~l~~EPGR~lv~~ag~lv~~V~~~k~~-~~~~~~vD~g~~~~~~~~~~~~~--~p~-l~~--------~ 282 (365)
T 3mt1_A 224 ---------GVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRE--TAK-VLP--------N 282 (365)
T ss_dssp ---------TCEEEECCSHHHHTTSEEEEEEEEEEEES-SSEEEEESCCHHHHCHHHHHTTC--CCC-CSS--------C
T ss_pred ---------CcEEEEeCchHhhccceEEEEEEEEEEEC-CcEEEEEcCccccCChHHhcCCc--Cce-ecc--------C
Confidence 25699999999999999999999999986 44566777777655554442221 211 111 1
Q ss_pred CCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 341 LSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 341 ~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
+ +..+++|+||+|+++|++.++..+|++++||+|+|.++|||+++|+|+||++|+|++|++
T Consensus 283 ~-~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~v 343 (365)
T 3mt1_A 283 E-GSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIR 343 (365)
T ss_dssp C-SSEEEEEECSSCCSSCEEEEEEESSCCCTTCEEEESSCCTTSTTSCCCGGGCCCCEEEEE
T ss_pred C-CceEEEEEeCCCCccCEEcccccCCCCCCCCEEEEecccchhhhhcccccCCCCCcEEEE
Confidence 1 457899999999999999987777899999999999999999999999999999977654
No 9
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=100.00 E-value=3e-66 Score=515.31 Aligned_cols=339 Identities=17% Similarity=0.189 Sum_probs=281.5
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
++++| |+||||++.|++|+++|+++++ +++++||+|||+++.|+++|.+.|+||+|+|.+|++.++++ + +++|+|
T Consensus 40 ~~~~T-P~yv~d~~~l~~n~~~l~~~~~~~~~~i~yAvKAN~~~~vl~~l~~~G~G~dvaS~~El~~a~~~-~-~~~Ii~ 116 (418)
T 3n29_A 40 EKIQT-PAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEY-M-DKEIHT 116 (418)
T ss_dssp TTCCS-SEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHHHHSCEEEESSHHHHHHHHHH-T-CSEEEE
T ss_pred hhCCC-CEEEEeHHHHHHHHHHHHHhhhhcCCEEEEEEccCCCHHHHHHHHHcCCeEEECCHHHHHHHHhh-C-CCCEEE
Confidence 67999 9999999999999999999996 79999999999999999999999999999999999999987 7 579999
Q ss_pred eCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCC--CCCCCCCC---CCcCCCCCcccHHHHHH
Q 015304 105 ANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDD--SGAKHPLD---SKYGVDHHPQEIVPLLE 179 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~--~~~~~~~~---srfGi~~~~~~~~~~~~ 179 (409)
.||+|++++|+.|++.|+. ++|||++||++|.+.+++.+++|||||+.+ .+..++++ +|||++ ++++.+.
T Consensus 117 ~~~~k~~~el~~A~~~g~~-i~vds~~EL~~l~~~a~~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~--~~~~~~~-- 191 (418)
T 3n29_A 117 YSPAFKEDEIGEIASLSHH-IVFNSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIR--AKDFENV-- 191 (418)
T ss_dssp EESSCCHHHHHHHHHHCSE-EEESSHHHHHHHGGGCTTSEEEEEBCCCCC----------CTTCCSSBC--GGGGTTC--
T ss_pred ECCCCCHHHHHHHHHcCCe-EEECCHHHHHHHHHhcCCCCEEEEEeCCCCCCCCcccccCCCCCcCcCC--HHHHHHh--
Confidence 9999999999999999995 899999999999999999999999998653 24455554 899999 8887542
Q ss_pred HHHHcCC-eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHH
Q 015304 180 AAEASGL-SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALH 258 (409)
Q Consensus 180 ~~~~~~l-~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~ 258 (409)
.+ ++.|||||+||+ .+.+.|.++++.+.++ ..+.|+ ++++||+||||+++|. +++++++++.|++.+.
T Consensus 192 -----~l~~l~Glh~HigSq-~~~~~~~~~~~~~~~~---~~~~g~-~l~~ldiGGGf~i~y~-~~~~~~~~~~i~~~~~ 260 (418)
T 3n29_A 192 -----DLNAIEGLHFHALCE-ESADALEAVLKVFEEK---FGKWIG-QMKWVNFGGGHHITKK-GYDVEKLIALCKNFSD 260 (418)
T ss_dssp -----CCTTCCEEECCCCSS-BCHHHHHHHHHHHHHH---HGGGTT-TCSEEECCSCBCTTST-TCCHHHHHHHHHHHHH
T ss_pred -----hcCceEEEEEecCCC-CCHHHHHHHHHHHHHH---HHHhCC-CCCEEEeCCCcCCCCC-CCCHHHHHHHHHHHHH
Confidence 44 799999999999 7899998887776543 345677 9999999999999875 5789999999999888
Q ss_pred hhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCc--------cccccccccc---ccc
Q 015304 259 AYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSF--------DWVNYDEAIA---KCT 327 (409)
Q Consensus 259 ~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~--------~~~~~~~~~~---~~~ 327 (409)
++ +++|++|||||++++||+|+|+|+++|.. +..++++|+|+++++ +|.+|+.+++ ...
T Consensus 261 ~~---------~~~ii~EPGR~lva~ag~lv~~V~~~K~~-~~~~~~vD~g~~~~m~d~~~~~~rp~l~~a~~~~~h~~~ 330 (418)
T 3n29_A 261 KY---------GVQVYLEPGEAVGWQTGNLVASVVDIIEN-EKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENE 330 (418)
T ss_dssp HH---------TCEEEECCSHHHHTTSEEEEEEEEEEEES-SSEEEEESSCHHHHSHHHHHTTCCCCBTTEEEEECTTCC
T ss_pred Hc---------CCEEEEeCCHHhhhhcEEEEEEEEEEEeC-CCEEEEECCcccccchhhhccCcCceeeccccccccccc
Confidence 76 25799999999999999999999999986 445677787765444 3444443221 001
Q ss_pred ccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 328 PLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
++.. .+ .+..+++|+||+|+++|+|.++..+|++++||+|+|.++|||+++|+|+||++++|++|++
T Consensus 331 ~~~~-------~~-~~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fN~~~~p~~v~v 397 (418)
T 3n29_A 331 KISD-------LK-ENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLL 397 (418)
T ss_dssp BCCC-------CC-TTCEEEEEECSSSCTTCEEEEEEESSCCCTTCEEEESSCSSSSGGGCCCGGGCCCCEEEEE
T ss_pred cccC-------CC-CCceEEEEEcCCCCCCCEEeecccCCCCCCCCEEEEeCccchhHHHhccccCCCCCCEEEE
Confidence 1111 11 2457899999999999999977667789999999999999999999999999999977654
No 10
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=100.00 E-value=2.3e-64 Score=503.74 Aligned_cols=357 Identities=31% Similarity=0.522 Sum_probs=309.2
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++++| |+|+||+++|++|+++|++.+++++++|++|||+++.|++.+.+.|.||+|+|.+|++.++++|+++++|+++|
T Consensus 51 ~~~~t-P~~vidl~~l~~N~~~l~~~~~~~~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~~~r~~G~~~~~Il~~g 129 (419)
T 2plj_A 51 EQFGA-PLLLLDCDVIRQQYRALKNALPNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGVPADLTIHTH 129 (419)
T ss_dssp HHHCS-SEEEEEHHHHHHHHHHHHHHSTTEEEEEESTTCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECC
T ss_pred HhcCC-CEEEEeHHHHHHHHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCChhhEEEeC
Confidence 36789 99999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCC
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGL 186 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l 186 (409)
|.|++++++.|+++|+..++|||++|+++|.+.+++.+|.|||+++.. +..+...+|||++ ++++.++++.+++.++
T Consensus 130 ~~k~~~~l~~a~~~~v~~~~vds~~el~~l~~~a~~~~v~lrvd~g~~-~~~~~~~~RfG~~--~~e~~~~~~~~~~~~l 206 (419)
T 2plj_A 130 PIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSFRNS-EAFADLSKKFGCS--PEQALVIIETAKEWNI 206 (419)
T ss_dssp SSCCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTCEEEEEBCC----------CCCSCBC--HHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhcCCCCEEEEEcCCCC-CCCCCCCCCCcCC--HHHHHHHHHHHHhCCC
Confidence 999999999999999965899999999999998888899999998532 3444457999999 9999999998877799
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC-CCCHHHHHHHHHHHHHhhCCCCC
Q 015304 187 SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN-TKSFQEAASIIKEALHAYFPNEL 265 (409)
Q Consensus 187 ~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~ 265 (409)
++.|||+|+||++.+.+.+.++++++.++++.+++.|++.++++|+||||+++|.. .++++.+++.+++++..| +.
T Consensus 207 ~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~l~~GGG~~~~y~~~~~~~~~~~~~vr~~i~~y-~~-- 283 (419)
T 2plj_A 207 RIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLL-PE-- 283 (419)
T ss_dssp EEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCCCSSSCCCCHHHHHHHHHHHHTTS-CT--
T ss_pred cEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCcCcCCCCCCCCHHHHHHHHHHHHHhC-CC--
Confidence 99999999999988888888899999988888888786567899999999998743 468999999999999884 32
Q ss_pred CCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccccccccCCCCCCce
Q 015304 266 LPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTY 345 (409)
Q Consensus 266 ~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (409)
..++++||||++++++++++|+|+++|+..+.++++++.|++.++.+.+|+.+.+... +.. . .. +.+
T Consensus 284 ----~~~~~~EpGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~~~v~-~~~-~------~~-~~~ 350 (419)
T 2plj_A 284 ----TVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLT-TIK-Q------GG-ELI 350 (419)
T ss_dssp ----TCEEEECCCHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTGGGHHHHSCCCCCEE-ESC-C------SS-CEE
T ss_pred ----CCEEEEcCCHHHhhhcEEEEEEEEEEEeECCeEEEEEcCccccchHHHHhccccceEE-ecC-C------CC-Cce
Confidence 2568999999999999999999999998655567889999998888888876543211 111 1 11 357
Q ss_pred eEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 015304 346 NSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYV 403 (409)
Q Consensus 346 ~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~~ 403 (409)
+++|+|++||++|+++.++.+|++++||+|+|+++|||+++|+++||++++|+++++-
T Consensus 351 ~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~~ 408 (419)
T 2plj_A 351 PSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALN 408 (419)
T ss_dssp EEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEEC
T ss_pred eEEEEcCCcCCCCeeeecccCCCCCCCCEEEEeCCCCchhhhhhhhcCCCCCeEEEEe
Confidence 8999999999999999999999999999999999999999999999999999766543
No 11
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=100.00 E-value=2.5e-65 Score=517.72 Aligned_cols=361 Identities=18% Similarity=0.279 Sum_probs=309.8
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhC-CCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKL-PMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~-~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
+++| |+|+||+++|++|+++|++.+ ++++++|++|||+++.|++.+.+.|+||+|+|.+|+..++++|+++.+|+|+|
T Consensus 39 ~~~t-P~~vid~~~l~~n~~~l~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~I~~~g 117 (467)
T 2o0t_A 39 EYGT-PLFVIDEDDFRSRCRETAAAFGSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHG 117 (467)
T ss_dssp HHCS-SEEEEEHHHHHHHHHHHHHHTSSGGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECC
T ss_pred hcCC-CEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCCcccEEEeC
Confidence 4679 999999999999999999999 57999999999999999999999999999999999999999999989999999
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCC--CCCCCC---CCCCcCCCCCc--ccHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDD--SGAKHP---LDSKYGVDHHP--QEIV 175 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~--~~~~~~---~~srfGi~~~~--~~~~ 175 (409)
|.|++++++.|+++|+..++|||++|+++|.+.+ +..+|+||||++.+ ++..+. ..+|||++ + +++.
T Consensus 118 ~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~~~~~~srfG~~--~~~~e~~ 195 (467)
T 2o0t_A 118 NNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLS--VASGAAM 195 (467)
T ss_dssp TTCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEE--TTTTHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCCeEEEEEcCCCCCCCCcccccCCCCCCcCCc--CCHHHHH
Confidence 9999999999999999558999999999998764 36789999998532 122222 24899998 6 5788
Q ss_pred HHHHHHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH-HcC----CCCCcEEeecCCCCcCCCC---CCCH
Q 015304 176 PLLEAAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAA-RLG----NNKMRVLDIGGGFSFTNSN---TKSF 246 (409)
Q Consensus 176 ~~~~~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~-~~g----~~~~~~ldiGGG~~~~~~~---~~~~ 246 (409)
++++.+++ +++++.|||||+||+..+.+.|.++++++.++++.++ +.| + .+++||+||||+++|.. .+++
T Consensus 196 ~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~-~~~~ln~GGG~~i~y~~~~~~~~~ 274 (467)
T 2o0t_A 196 AAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTA-QIATVDLGGGLGISYLPSDDPPPI 274 (467)
T ss_dssp HHHHHHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHST-TCCEEECCCCBCCCSSTTCCCCCH
T ss_pred HHHHHHHhCCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccc-CCCEEEeCCCcCcCCCCCCCCCCH
Confidence 89988876 4899999999999998888999999999988888764 667 8 89999999999999852 3689
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe----CCeeEEE-EeCCcCCCcccccccc
Q 015304 247 QEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH----GEMRNYW-INDGKYGSFDWVNYDE 321 (409)
Q Consensus 247 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~----g~~~~~~-i~~g~~~~~~~~~~~~ 321 (409)
+++++.|+.++.++++..++ |..++++||||+++++||+|+|+|+++|+. +.+++|+ +|.|++.++++.+|++
T Consensus 275 ~~~~~~v~~~i~~~~~~~g~--~~~~l~~EpGR~~v~~ag~l~t~V~~vK~~~~g~~~~~~~~~vd~g~~~~~~p~~y~~ 352 (467)
T 2o0t_A 275 AELAAKLGTIVSDESTAVGL--PTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGA 352 (467)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCEEEEEEESCCTTTCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCCeEEeccchheeccceEEEEEEEEEeecccCCCCccEEEEEcCccccccchHHhCC
Confidence 99999999999987654333 456799999999999999999999999985 3334454 5778999999999998
Q ss_pred ccccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCC-CCCCCCEEEEcCCCccccccCCCCCCCCCCcEE
Q 015304 322 AIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLP-ELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIP 400 (409)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp-~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v 400 (409)
++++ .++.. . ...+.++++|+||+||++|+++.++.+| ++++||+|+|.++|||+++|+++||++++|++|
T Consensus 353 ~~~~-~~~~~-~------~~~~~~~~~v~G~~C~s~D~~~~d~~lp~~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v 424 (467)
T 2o0t_A 353 QYDV-RLVSR-V------SDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVV 424 (467)
T ss_dssp CCCE-EECSS-C------CCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCCCCEEE
T ss_pred cCce-EecCC-C------CCCCceeEEEECCCcCCCCEEEeccccCCCCCCCCEEEEcCCCcchHHHhhHhhCCCCCcEE
Confidence 7754 22222 1 1124678999999999999999999999 999999999999999999999999999999776
Q ss_pred EE
Q 015304 401 TY 402 (409)
Q Consensus 401 ~~ 402 (409)
++
T Consensus 425 ~v 426 (467)
T 2o0t_A 425 AV 426 (467)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 12
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=1.4e-63 Score=499.34 Aligned_cols=350 Identities=21% Similarity=0.337 Sum_probs=300.6
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCC----CcEE
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSP----DRII 103 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~----~~Ii 103 (409)
+++| |+|+||+++|++|+++|+ +++ +++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|+++ ++|+
T Consensus 23 ~~~t-P~~vidl~~l~~N~~~l~-~~~--~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~~~~~Iv 98 (425)
T 1knw_A 23 EFGC-PVWVYDAQIIRRQIAALK-QFD--VVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIV 98 (425)
T ss_dssp HHCS-SEEEEEHHHHHHHHHTTT-TSS--EEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCTTTCTTSEE
T ss_pred hhCC-CEEEEEHHHHHHHHHHHh-hCC--cceEeeecCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcCCCCCCCcCeEE
Confidence 6789 999999999999999999 887 8999999999999999999999999999999999999999998 8999
Q ss_pred EeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCC--CCCCCCCC---CCcCCCCCcccHHHHH
Q 015304 104 YANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDD--SGAKHPLD---SKYGVDHHPQEIVPLL 178 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~--~~~~~~~~---srfGi~~~~~~~~~~~ 178 (409)
|+||+|++++++.|+++|+. ++|||++|++++.+.+++.++.||||++.+ .|.++++| +|||++ ++++.+++
T Consensus 99 ~~g~~k~~~~l~~a~~~~i~-~~vds~~el~~l~~~a~~~~v~lRv~~~~~~~~h~~i~tG~~~~RfG~~--~~~~~~~~ 175 (425)
T 1knw_A 99 FTADVIDQATLERVSELQIP-VNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIW--YTDLPAAL 175 (425)
T ss_dssp EEESCCCHHHHHHHHHHTCC-EEESSHHHHHHHHHHSTTCEEEEEEECSCCSSCTTSCCSSSTTCCCSEE--GGGHHHHH
T ss_pred EECCCCCHHHHHHHHHcCCE-EEECCHHHHHHHHHhhhhccEEEEECCCCCCCCCcccccCCCCCCCcCC--HHHHHHHH
Confidence 99999999999999999998 899999999999999888899999998653 46788886 899999 99999999
Q ss_pred HHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC---CCCCHHHH------
Q 015304 179 EAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS---NTKSFQEA------ 249 (409)
Q Consensus 179 ~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~---~~~~~~~~------ 249 (409)
+.+++.++++.|+|+|+||++ +.+.|.++++++.+ .++++|+ +++++|+||||+++|. ..++++++
T Consensus 176 ~~~~~~~l~l~Gl~~H~gs~~-~~~~~~~~~~~~~~---~~~~~G~-~~~~ln~GGG~~~~y~~~~~~~d~~~~~~~~~~ 250 (425)
T 1knw_A 176 DVIQRHHLQLVGIHMHIGSGV-DYAHLEQVCGAMVR---QVIEFGQ-DLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNA 250 (425)
T ss_dssp HHHHHTTCEEEEEECCCCCTT-CHHHHHHHHHHHHH---HHHHHTC-CCSEEECCCCCCCCCSTTCCCCCHHHHHHHHHH
T ss_pred HHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHHHH---HHHHhCC-CCcEEEeCCCcccCCCCCCCCCCHHHHHHHHHH
Confidence 988767999999999999998 88888888777544 4555688 8999999999999983 24688888
Q ss_pred -HHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccc
Q 015304 250 -ASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTP 328 (409)
Q Consensus 250 -~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 328 (409)
++.++..+. | ++++++||||+++++||+|+|+|+++|+..+.++++++.|++.++++.+|+.+++. .+
T Consensus 251 ~~~~i~~~~~-~---------~~~~~~EpGr~~v~~ag~l~t~V~~vk~~~~~~~~~vd~G~~d~~~~~l~~~~~~~-~~ 319 (425)
T 1knw_A 251 AREQIARHLG-H---------PVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHI-SA 319 (425)
T ss_dssp HHHHHHHHHT-S---------CCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHHHCCCCCE-EE
T ss_pred HHHHHHHHhC-C---------CCEEEEcCChHHhhhceEEEEEEEEEEecCCcEEEEECCchhhccchhhhccccee-Ee
Confidence 444444443 2 24699999999999999999999999987555677888899988888888887643 22
Q ss_pred cccccccccCCCCCCceeEEEEccccCCCCccccC-------CCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEE
Q 015304 329 LTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSG-------HKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~-------~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
+...+.. ......++++|+||+||++|+++.+ +.+|++++||+|+|.++|||+++|+++||++++|++++
T Consensus 320 ~~~~~~~---~~~~~~~~~~v~G~~C~s~D~~~~d~~~~~~~~~lp~~~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~ 396 (425)
T 1knw_A 320 LAADGRS---LEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVL 396 (425)
T ss_dssp ECTTCCC---CTTCCEEEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEEE
T ss_pred cCCCCCc---cccCCceeEEEECCCCCCCCEEeecCCCCccceeCCCCCCCCEEEEeCCCcchHHHHhHhhCCCCCeEEE
Confidence 3221110 0001136899999999999999999 78999999999999999999999999999999998877
Q ss_pred EE
Q 015304 402 YV 403 (409)
Q Consensus 402 ~~ 403 (409)
+-
T Consensus 397 ~~ 398 (425)
T 1knw_A 397 FD 398 (425)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 13
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00 E-value=7.3e-64 Score=502.67 Aligned_cols=363 Identities=18% Similarity=0.251 Sum_probs=302.6
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEe
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~ 105 (409)
++++| |+|+||+++|++|+++|++.++ +++++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|+++.+|+|.
T Consensus 13 ~~~~t-P~~vid~~~l~~n~~~l~~~~~~~~~i~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~I~~~ 91 (428)
T 2j66_A 13 KRFET-PFYLYDGDFIEAHYRQLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALARHAGFSAENIIFS 91 (428)
T ss_dssp HHSCS-SEEEEEHHHHHHHHHHHHHTSCTTEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEEC
T ss_pred HhhCC-CEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeeeCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCCcCeEEEe
Confidence 36889 9999999999999999999998 799999999999999999999999999999999999999999998889999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC-CCCCCC---CCCcCCCCCcccHHHH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDS-GAKHPL---DSKYGVDHHPQEIVPL 177 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~-~~~~~~---~srfGi~~~~~~~~~~ 177 (409)
||.|++++++.|+++|+..++|||++|+++|.+.+ +..+|+||||++.+. +..+.+ .+|||++ ++++.++
T Consensus 92 g~~k~~~~i~~a~~~~v~~~~vds~~el~~l~~~a~~~~~~~~V~lrvn~g~~~~~~~~~~~~~~srfG~~--~~e~~~~ 169 (428)
T 2j66_A 92 GPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFGSTAIKMGGVPRQFGMD--ESMLDAV 169 (428)
T ss_dssp CSCCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC--CCCSSSCCCCSSSEE--GGGHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCceEEEEEcCCCCCCCCccccCCCCCCCCCC--HHHHHHH
Confidence 99999999999999999558999999999998754 457899999997532 233333 3899999 9999999
Q ss_pred HHHHHHc-CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHH
Q 015304 178 LEAAEAS-GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETA-ARLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASI 252 (409)
Q Consensus 178 ~~~~~~~-~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~ 252 (409)
++.+++. ++++.|||+|+||+..+.+.+.++++++.++++.+ ++.|+ ++++||+||||+++|.. .++++++++.
T Consensus 170 ~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~l~~GGG~~i~y~~~~~~~~~~~~~~~ 248 (428)
T 2j66_A 170 MDAVRSLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGI-VCECINLGGGFGVPYFSHEKALDIGKITRT 248 (428)
T ss_dssp HHHHHHCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCC-CCSEEECCCCBCCCCC--CCCCCHHHHHHH
T ss_pred HHHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEeCCCcCcCCCCCCCCCCHHHHHHH
Confidence 9988775 89999999999999888888988888888888766 56788 99999999999998852 4689999999
Q ss_pred HHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccc----cccccccccc
Q 015304 253 IKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVN----YDEAIAKCTP 328 (409)
Q Consensus 253 i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~----~~~~~~~~~~ 328 (409)
|++.+..|+. .+. |..++++||||+++++||+++|+|+++|+..+...+++|.|++..+.+.+ |++++++. .
T Consensus 249 i~~~~~~~~~-~~~--~~~~l~~EpGr~~~~~ag~l~t~V~~vK~~~g~~~~~~d~g~~~~~~~~~~~~~y~~~~~~~-~ 324 (428)
T 2j66_A 249 VSDYVQEARD-TRF--PQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGRSMRSNYPME-Y 324 (428)
T ss_dssp HHHHHHHHHT-TTC--TTCEEEEEESHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCTTC-----------CEE-E
T ss_pred HHHHHHHHHh-ccC--CCcEEEEecCHHHHhhceEEEEEEEEEEecCCcEEEEECCccccchhhhccchhccCcCcEE-e
Confidence 9999998864 111 45779999999999999999999999998754333446777777777777 77776642 2
Q ss_pred cc--cccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCC-CCCCCCCCcEEEEE
Q 015304 329 LT--LASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGT-NFNGYNTAAIPTYV 403 (409)
Q Consensus 329 l~--~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~-~fn~~~~p~~v~~~ 403 (409)
+. +.. . ....++++|+||+||++|+++.++.+|++++||+|+|.++|||+++|++ +||++++|+++++-
T Consensus 325 ~~~~~~~-----~-~~~~~~~~i~G~~C~s~D~l~~d~~lp~~~~GD~l~~~~~GAY~~~~~s~~fn~~~~p~~v~~~ 396 (428)
T 2j66_A 325 IPVREDS-----G-RRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKR 396 (428)
T ss_dssp EC---------------CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEE
T ss_pred ecccCCC-----C-CCCCceEEEEcCCCCCCcEEEecccCCCCCCCCEEEEeCCCcchHHhhhhhhhCCCCCeEEEEE
Confidence 21 111 0 1145789999999999999999999999999999999999999999986 99999999776543
No 14
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=5.7e-63 Score=495.36 Aligned_cols=355 Identities=26% Similarity=0.372 Sum_probs=306.0
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
++++| |+|+||+++|++|+++|++.++ +++++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|+++.+|+|
T Consensus 29 ~~~~t-P~~vidl~~i~~N~~~l~~~~~~~~~~l~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~i~~ 107 (425)
T 2qgh_A 29 QTHKT-PFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVF 107 (425)
T ss_dssp HHCCS-SEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEE
T ss_pred HhhCC-CEEEEEHHHHHHHHHHHHHhcCcCCCEEEEEeccCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCChhHEEE
Confidence 36799 9999999999999999999998 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCC--CCCCCCCC---CCcCCCCCcccHH
Q 015304 105 ANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDD--SGAKHPLD---SKYGVDHHPQEIV 175 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~--~~~~~~~~---srfGi~~~~~~~~ 175 (409)
+||.|++++++.|+++|+..++|||++|+++|.+.+ +..+|+||||++.+ .+..+.++ +|||++ ++++.
T Consensus 108 ~g~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~--~~e~~ 185 (425)
T 2qgh_A 108 SGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVG--EKEAL 185 (425)
T ss_dssp CCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBC--HHHHH
T ss_pred cCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCcccccCCCCCCCcCC--HHHHH
Confidence 999999999999999999658999999999998754 45789999998653 34555664 899999 99999
Q ss_pred HHHHHHHHc-CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC--CCCHHHHHHH
Q 015304 176 PLLEAAEAS-GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN--TKSFQEAASI 252 (409)
Q Consensus 176 ~~~~~~~~~-~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~--~~~~~~~~~~ 252 (409)
++++.+++. ++++.|||+|+||+..+.+.+.++++++.++++.+++.|+ ++++||+||||+++|.. .++++++++.
T Consensus 186 ~l~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~l~~GGG~~i~y~~~~~~~~~~~~~~ 264 (425)
T 2qgh_A 186 EMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGI-DLRFFDVGGGIGVSYENEETIKLYDYAQG 264 (425)
T ss_dssp HHHHHHHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCCCBCCCTTSCCCCCHHHHHHH
T ss_pred HHHHHHHhCCCccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEECCCcCcCCCCCCCCCHHHHHHH
Confidence 999988775 8999999999999988888899999999988888887888 89999999999998832 3578999999
Q ss_pred HHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccc
Q 015304 253 IKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLA 332 (409)
Q Consensus 253 i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~ 332 (409)
+++.+..| ++++++||||+++++|++++|+|+++|+..+..+++++.|+...+++.+|+.+++. .++ ..
T Consensus 265 v~~~i~~~---------~~~~~~EpGr~~~~~a~~l~t~V~~vk~~~~~~~~~vd~G~~d~~~~~l~~~~~~~-~~~-~~ 333 (425)
T 2qgh_A 265 ILNALQGL---------DLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAI-RVI-TP 333 (425)
T ss_dssp HHHHTTTC---------CCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCE-EEC-SC
T ss_pred HHHHHhhc---------CCEEEEcCchhhhhcceEEEEEEEEEEecCCCEEEEEcCchhcccchhhcCCccee-eec-cC
Confidence 98887633 24589999999999999999999999986444566778788877888888877542 122 11
Q ss_pred cccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 333 SSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
. .....++++|+||+||++|+++.++.+|++++||+|+|.++|||+++|+|+||++++|+++++
T Consensus 334 ~------~~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~ 397 (425)
T 2qgh_A 334 S------KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELAL 397 (425)
T ss_dssp C---------CCEEEEEECSSSSTTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEE
T ss_pred C------CCCcceEEEEECCCcCCCcEecccccCCCCCCCCEEEEeCCCCchhhhhccccCCCCCeEEEE
Confidence 0 011257899999999999999999999999999999999999999999999999999977765
No 15
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00 E-value=1.7e-62 Score=493.66 Aligned_cols=356 Identities=21% Similarity=0.299 Sum_probs=308.8
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC--------CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCC
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLP--------MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSP 99 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~--------~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~ 99 (409)
+++| |+|+||+++|++|+++|++.++ +++++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|+++
T Consensus 27 ~~~t-P~~vidl~~l~~n~~~l~~~~~~a~~~~~~~~~~~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~~ 105 (434)
T 1twi_A 27 KFGT-PLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPS 105 (434)
T ss_dssp HHCS-SEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCG
T ss_pred hhCC-CEEEEEHHHHHHHHHHHHHhhhhhhcccCCCeEEEEEEccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHCCCCC
Confidence 4578 9999999999999999999887 789999999999999999999999999999999999999999988
Q ss_pred CcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCC--CCCCCCC---CCcCCCCC
Q 015304 100 DRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDS--GAKHPLD---SKYGVDHH 170 (409)
Q Consensus 100 ~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~--~~~~~~~---srfGi~~~ 170 (409)
.+|+|.||.|++++++.|+++|+..++|||++|+++|.+.+ +..+|+||||++.+. |..+++| +|||++
T Consensus 106 ~~I~~~g~~k~~~~i~~a~~~~i~~~~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~tG~~~~rfG~~-- 183 (434)
T 1twi_A 106 KKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLD-- 183 (434)
T ss_dssp GGEEECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEE--
T ss_pred CcEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCcccccCCCCCCccCC--
Confidence 89999999999999999999999558999999999998753 557899999986532 3334443 899999
Q ss_pred ccc--HHHHHHHHHHc-CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC---CCC
Q 015304 171 PQE--IVPLLEAAEAS-GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS---NTK 244 (409)
Q Consensus 171 ~~~--~~~~~~~~~~~-~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~---~~~ 244 (409)
+++ +.++++.+++. ++++.|||+|+||+..+.+.+.++++++.++++.+++.|+ ++++||+||||+++|. ..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~l~~GGg~~~~y~~~~~~~ 262 (434)
T 1twi_A 184 VESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI-EIEDVNLGGGLGIPYYKDKQIP 262 (434)
T ss_dssp STTSHHHHHHHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTC-CCSEEECCCCBCCCSSSSSCCC
T ss_pred hhhhHHHHHHHHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEECCCcCcCCCCCCCCC
Confidence 888 99999988774 8999999999999988888888899999988888887788 8999999999999884 247
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCC-cEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCcccccccccc
Q 015304 245 SFQEAASIIKEALHAYFPNELLPGSS-LRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAI 323 (409)
Q Consensus 245 ~~~~~~~~i~~~l~~~~~~~~~~~~~-~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~ 323 (409)
+++++++.|++++.+|++.. + +++++||||+++++|++++|+|+++|+..+.+.++++.|++.++.+.+|+.++
T Consensus 263 ~~~~~~~~i~~~i~~~~~~~-----g~~~~~~EpGr~~~~~a~~l~~~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~ 337 (434)
T 1twi_A 263 TQKDLADAIINTMLKYKDKV-----EMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYH 337 (434)
T ss_dssp CHHHHHHHHHHHHHTTTTTS-----CCCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHHHHhhc-----CCeEEEEccChHhhhhceEEEEEEEEEEecCCcEEEEEcCchhcccchHHhcccc
Confidence 89999999999999997542 3 56899999999999999999999999864445666777788777888888765
Q ss_pred ccccccccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 324 AKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
+. .++.. .+. . ++++|+|++||++|+++.++.+|++++||+|+|.++|||+++|+|+||++++|+++++
T Consensus 338 ~~-~~~~~-------~~~-~-~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~ 406 (434)
T 1twi_A 338 HI-INCKV-------KNE-K-EVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLT 406 (434)
T ss_dssp CE-EESBC-------CSC-E-EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTTTCCCCEEEEE
T ss_pred ee-EecCC-------CCC-C-ceEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchHhhhhhhhCCCCCeEEEE
Confidence 42 12221 011 3 7899999999999999999999999999999999999999999999999999977664
No 16
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-62 Score=484.40 Aligned_cols=344 Identities=21% Similarity=0.327 Sum_probs=295.0
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEe
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~ 105 (409)
+++| |+|+||+++|++|+++|++.++ +++++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|+++++|+++
T Consensus 10 ~~~t-P~~vidl~~l~~N~~~l~~~~~~~~~~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~Il~~ 88 (386)
T 2yxx_A 10 IHGT-PTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWN 88 (386)
T ss_dssp HHCS-SEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEEC
T ss_pred hcCC-CEEEEEHHHHHHHHHHHHHhhccCCceEEEEEeeCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcCCChhhEEEe
Confidence 5789 9999999999999999999998 469999999999999999999999999999999999999999999889999
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCC-CeEEEEEecCCCC--CCCCCCC---CCcCCCCCcccHHHHHH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPK-CDLLIRIKPPDDS--GAKHPLD---SKYGVDHHPQEIVPLLE 179 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~-~~v~lRv~~~~~~--~~~~~~~---srfGi~~~~~~~~~~~~ 179 (409)
||.|++++++.|+++|+..++|||.+|++++.+.+++ .++.||||++.+. |.++++| +|||++ +++ .++++
T Consensus 89 ~~~k~~~~l~~a~~~~v~~~~vds~~el~~l~~~a~~~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~--~~~-~~~~~ 165 (386)
T 2yxx_A 89 GNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIP--LED-LDSFM 165 (386)
T ss_dssp CSCCCHHHHHHHHHTTCCEEEECCHHHHHHHHHHCCTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEE--GGG-HHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhcCcCCeEEEEECCCCCCCCCcccccCCCCCCCCCC--hhH-HHHHh
Confidence 9999999999999999944899999999999999884 8999999986532 4556665 899999 888 88888
Q ss_pred HHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC-CCCHHHHHHHHHHHHH
Q 015304 180 AAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN-TKSFQEAASIIKEALH 258 (409)
Q Consensus 180 ~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~-~~~~~~~~~~i~~~l~ 258 (409)
.+.+++++.|+|+|+||++.+.+.+.++++++.++++.+ .++++|+||||+++|.. .++++.+++.+++++.
T Consensus 166 -~~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l------~~~~~n~GGG~~~~~~~~~~~~~~~~~~vr~~i~ 238 (386)
T 2yxx_A 166 -ERFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY------GFEEINIGGGWGINYSGEELDLSSYREKVVPDLK 238 (386)
T ss_dssp -HHHTTSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH------TCSEEECCCCBCCCSSSCCCCHHHHHHHTGGGGT
T ss_pred -hccCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhC------CCCEEEECCCcCcCCCCCCCCHHHHHHHHHHHHH
Confidence 666799999999999999877788888888776665543 35789999999987632 4578888898888876
Q ss_pred hhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccccccccC
Q 015304 259 AYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTS 338 (409)
Q Consensus 259 ~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (409)
.| | ++++||||++++++++++|+|+++|+..+.+.++++.|+..++.+.+|+.+++. .++..
T Consensus 239 ~y--------~--~~~~epGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~~~-~~i~~------- 300 (386)
T 2yxx_A 239 RF--------K--RVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRI-FVLGK------- 300 (386)
T ss_dssp TC--------S--EEEEEECHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCE-EETTC-------
T ss_pred hC--------C--eEEecCcceeeccccEEEEEEEEEEecCCcEEEEEeCccccccchHHhcccCce-EeccC-------
Confidence 54 2 588999999999999999999999986545566777787777777777776542 12221
Q ss_pred CCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 339 KGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 339 ~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
.+ +.++++|+||+||++|+++.++.+|++++||+|+|+++|||+++|+++||++++|+++++
T Consensus 301 ~~--~~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~~~~ 362 (386)
T 2yxx_A 301 QG--KEMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLV 362 (386)
T ss_dssp CC--CSEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEE
T ss_pred CC--CceEEEEEcCCCCCCCEEeeccccCCCCCCCEEEEeCCCCchHHHhhhhhCCCCCcEEEE
Confidence 01 257899999999999999999999999999999999999999999999999999977665
No 17
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=100.00 E-value=3.7e-59 Score=467.53 Aligned_cols=353 Identities=25% Similarity=0.372 Sum_probs=295.4
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
+++| |+|++|+++|++|+++|++.+++.+++|++|||+++.|++.+.+.|++|+|+|.+|++.++++|+++.+|++.||
T Consensus 31 ~~~t-P~~vidl~~l~~N~~~l~~~~~~~~l~~vvKan~~~~v~~~l~~~G~~~~vas~~E~~~~~~~G~~~~~Il~~g~ 109 (420)
T 2p3e_A 31 TFGT-PLYVYSSNFIKERFEAYRKAFPDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGV 109 (420)
T ss_dssp HHCS-SEEEEEHHHHHHHHHHHHHHSTTSEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECSS
T ss_pred hhCC-CEEEEEHHHHHHHHHHHHHhCCcCeEEEEEecCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCChhHEEEeCC
Confidence 4578 999999999999999999999988999999999999999999999999999999999999999998878999999
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH----CCCCeEEEEEecCCCC--CCCCCCC---CCcCCCCCcccHHHHH
Q 015304 108 CKPVSHIKYAANVGVNLTTFDSVEELHKIRKW----HPKCDLLIRIKPPDDS--GAKHPLD---SKYGVDHHPQEIVPLL 178 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~----~~~~~v~lRv~~~~~~--~~~~~~~---srfGi~~~~~~~~~~~ 178 (409)
.|++++++.|+++|+..++|||++|+++|.+. .+..+|+||||++.+. +.++++| +|||++ ++++.+++
T Consensus 110 ~~~~~~l~~a~~~~i~~~~vds~~~l~~l~~~a~~~~~~~~v~lRvn~~~~~~~~~~idtG~~~~R~G~~--~~e~~~~~ 187 (420)
T 2p3e_A 110 GKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVD--IREAQKEY 187 (420)
T ss_dssp CCCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------CCSCEE--GGGHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCCcccccCCCCCCCCCC--HHHHHHHH
Confidence 99999999999999955899999999999864 3567899999986532 6677875 899999 99999999
Q ss_pred HHHHHc-CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCC---CCCHHHHHHHHH
Q 015304 179 EAAEAS-GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSN---TKSFQEAASIIK 254 (409)
Q Consensus 179 ~~~~~~-~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~---~~~~~~~~~~i~ 254 (409)
+.+++. ++++.|+|+|+||+..+.+.+.++++++.++++.+++.|+ +++++|+|||++++|.. .++++.+++.++
T Consensus 188 ~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~l~~Ggg~~~~~~~~~~~~~~~~~~~~vr 266 (420)
T 2p3e_A 188 EYASKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGF-DIKYLDIGGGLGIKYKPEDKEPAPQDLADLLK 266 (420)
T ss_dssp HHHHTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTC-CCCEEECCCCBCCCCSTTCCCCCHHHHHHHHT
T ss_pred HHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEECCCcCcCCCCCCCCCCHHHHHHHHH
Confidence 988774 8999999999999876666788899999998888887788 88999999999998752 356889999999
Q ss_pred HHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcCCCccccccccccccccccccccc
Q 015304 255 EALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASS 334 (409)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 334 (409)
.++..|. .+++.||||+++++|++++|+|+++|+..+...++++.|...++.+.+|+.+++. .++...
T Consensus 267 ~g~~~yg---------~~~~~e~Gr~~~~~a~~l~t~Vi~vk~~~g~~~a~v~~G~~dg~~~~l~~~~~~~-v~v~~~-- 334 (420)
T 2p3e_A 267 DLLENVK---------AKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHI-IPVETK-- 334 (420)
T ss_dssp TTC--CC---------SEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHHCCCCCE-EESBCC--
T ss_pred HHHHhcC---------CEEEEeCCHHHHhhceEEEEEEEEEEecCCcEEEEEcCchhcccchhhhCcccee-EecCCC--
Confidence 9888762 3478999999999999999999999986544556677777777777777665432 123210
Q ss_pred cccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 335 LTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 335 ~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
++ +.++++|+|++||++|+++.++.+|++++||+|+|.++|||+++|+|+||++++|+++++
T Consensus 335 -----g~-~~~~~~i~G~~Cms~D~~~~d~~lp~~~~GD~v~~~~~gAY~~~~~s~fn~~~~p~~~~~ 396 (420)
T 2p3e_A 335 -----ER-KKVVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV 396 (420)
T ss_dssp -----C----CEEEEECSSSSTTCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEE
T ss_pred -----CC-CceeEEEEccCCCCccEEeecccCCCCCCCCEEEEeCCCcchhhhhhhhhcCCCCeEEEE
Confidence 11 236799999999999999999999999999999999999999999999999999977664
No 18
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=100.00 E-value=5.7e-53 Score=434.00 Aligned_cols=374 Identities=18% Similarity=0.285 Sum_probs=299.5
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CcceEEecCcCCcHHHHHHHHHcC----
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLP----------MIHPHYAVKCNPEPALLEALAALG---- 78 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKan~~~~vl~~l~~~G---- 78 (409)
-++.+++++... ++++| |+||+|++.|++|+++|+++|+ +++++||+|||+++.|++.+.+.|
T Consensus 29 v~l~~l~~~l~~--~~~gT-P~yV~D~d~L~~ni~~l~~af~~a~~~~~y~g~~~i~YAVKAN~~~~Vl~~L~~~Ga~~g 105 (619)
T 3nzp_A 29 PAIIDIVKELRD--DGYKG-PLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYN 105 (619)
T ss_dssp CBHHHHHHHHHH--TTCCS-CEEEECHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEGGGCCCHHHHHHHHHHTGGGT
T ss_pred CCHHHHHHHHHh--cCCCC-CEEEEcHHHHHHHHHHHHHHHHHHhhhcccCCCEEEEEEEeccCcHHHHHHHHHhCCCCC
Confidence 578899888554 48999 9999999999999999999885 368999999999999999999988
Q ss_pred CcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHH---HcCCc-EEEecCHHHHHHHHhHC-----CCCeEEEEE
Q 015304 79 SNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAA---NVGVN-LTTFDSVEELHKIRKWH-----PKCDLLIRI 149 (409)
Q Consensus 79 ~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~---~~gv~-~~~vds~~el~~i~~~~-----~~~~v~lRv 149 (409)
+||||+|.+|+..++++|+++..|+++| .|++++++.|+ +.|.. .++|||++||++|.+.+ ++.+|+|||
T Consensus 106 ~G~dvaS~~El~~al~aG~~~~~Iv~nG-~K~~e~I~~Al~a~~~g~~v~ivVDS~~ELe~l~~~a~~~g~~~~~V~LRI 184 (619)
T 3nzp_A 106 YGLEAGSKAELLLAMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRV 184 (619)
T ss_dssp CEEEECSHHHHHHHHHHSCTTSEEEECS-CCCHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTSCSCCCEEEEEB
T ss_pred ceEEEeCHHHHHHHHhcCCCCCEEEeCC-CCCHHHHHHHHhhhhcCCcEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEE
Confidence 7999999999999999999988888877 49999999987 55553 47999999999998875 567899999
Q ss_pred ecCC-CCCCCCCCC---CCcCCCCCcccHHHHHHHHHHcC-C-eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 015304 150 KPPD-DSGAKHPLD---SKYGVDHHPQEIVPLLEAAEASG-L-SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLG 223 (409)
Q Consensus 150 ~~~~-~~~~~~~~~---srfGi~~~~~~~~~~~~~~~~~~-l-~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g 223 (409)
|+.. .+|..++++ +|||++ ++++.++++.+++.+ + ++.|||||+||++.+.+.|.++++++.++++.+++.|
T Consensus 185 np~~~g~~~~~~TGg~~sKFGi~--~ee~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~~G 262 (619)
T 3nzp_A 185 RLHSAGVGIWAKSGGINSKFGLT--STELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMG 262 (619)
T ss_dssp CCTTC-------------CCSBC--HHHHHHHHHHHHHTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ecCCCCCcccccCCCCCccCcCC--HHHHHHHHHHHHhCCCCCceeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9853 223344454 899999 999999999988764 6 6999999999999999999999999999998888888
Q ss_pred CCCCcEEeecCCCCcCCCC-------CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEE
Q 015304 224 NNKMRVLDIGGGFSFTNSN-------TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKR 296 (409)
Q Consensus 224 ~~~~~~ldiGGG~~~~~~~-------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k 296 (409)
++++++||+||||+++|.. .+++++|++.|...+++++...+ .|.++|++||||+++++||+|+|+|+++|
T Consensus 263 ~~~l~~LDiGGG~gI~Y~~~~~~~s~~~~l~eya~~I~~~l~~~~~~~~--~~~p~Ii~EPGR~iva~aGvLvt~Vi~vk 340 (619)
T 3nzp_A 263 AKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKK--DLEPDIFIESGRFVAANHAVLIAPVLELF 340 (619)
T ss_dssp CTTCCEEEEESCBCCCCCCSSSCCSCSSCHHHHHHHHHHHHHHHHHHTT--CCCCEEEECCCHHHHGGGEEEEEEEEEEE
T ss_pred CCCCCEEEeCCCcCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHHhcC--CCCCEEEEeccHHHHHhhhhEEEEEEEEe
Confidence 6589999999999999853 26899999999999998875432 24567999999999999999999999988
Q ss_pred EeCC----------------------------------------------------------------------------
Q 015304 297 VHGE---------------------------------------------------------------------------- 300 (409)
Q Consensus 297 ~~g~---------------------------------------------------------------------------- 300 (409)
....
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~d~~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~ 420 (619)
T 3nzp_A 341 SQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLL 420 (619)
T ss_dssp CCCCCGGGSCCCSSCCHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCcccccCCCccccHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6310
Q ss_pred ----------------eeEEEEeCCcCCCccccccccccccccccccccccccCCCCCCceeEEEEccccCCCCccc--c
Q 015304 301 ----------------MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVF--S 362 (409)
Q Consensus 301 ----------------~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~--~ 362 (409)
..+|++|-++..++...|==++.++..|+.+.. +.+..++.+.+-||+|.+.+- .
T Consensus 421 ~~~~~~~~~~~l~~~~~~~y~~n~S~fqslpD~W~i~q~fpi~Pi~rl~-------e~p~~~~~l~diTCDsdg~i~~~~ 493 (619)
T 3nzp_A 421 GDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLD-------EEPTRSASIWDITCDSDGEISYSK 493 (619)
T ss_dssp C-------------CCSBEEEESSCTTTTCHHHHHSSCCCCEEESSCTT-------SCCCCBBCCEESCSCTTSBCCCCS
T ss_pred hccccchhHHHHHHHhhHHheeeehhhccCcchhhcCcccceeeccccC-------CCcceeeEEecccccCCCccccCC
Confidence 134666655544433222113445445676643 336688999999999988843 2
Q ss_pred C--CCCCCCC-CC--CEEEEcCCCccccccCCCCCCCCCCcEEE
Q 015304 363 G--HKLPELE-VT--DWLVFSEMGAYTRARGTNFNGYNTAAIPT 401 (409)
Q Consensus 363 ~--~~lp~l~-~G--D~l~~~~~GAY~~s~~~~fn~~~~p~~v~ 401 (409)
+ ++||+++ .| -+|.|+.+|||+..++..+|.|+.|.+|.
T Consensus 494 ~~~l~lh~~~~~~~~y~lg~fl~GAYQe~lg~~HnLfg~~~~v~ 537 (619)
T 3nzp_A 494 DKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAI 537 (619)
T ss_dssp SSCCBCCCCCTTTSCCEEEECSCSSSTTTTCCCTTSCCCCEEEE
T ss_pred cccccCCCCCCCCCCcEEEEEccchHHHHHhhccccCCCCCEEE
Confidence 2 3556776 34 38999999999999999999999996654
No 19
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.3e-52 Score=431.63 Aligned_cols=374 Identities=20% Similarity=0.265 Sum_probs=296.8
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CcceEEecCcCCcHHHHHHHHHcC--Cc
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLP----------MIHPHYAVKCNPEPALLEALAALG--SN 80 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKan~~~~vl~~l~~~G--~g 80 (409)
-++.+++++... ++++| |+||+|++.|++|+++|+++|+ +++++||+|||+++.|++.+.+.| +|
T Consensus 70 v~l~eLa~~l~~--~~~gT-PlyV~D~d~Lr~ni~~l~~af~~a~~~~~Y~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~G 146 (666)
T 3nzq_A 70 VDLAQLVKTREA--QGQRL-PALFCFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLG 146 (666)
T ss_dssp EEHHHHHHHHHH--TTCCS-SEEEECHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEGGGCCCHHHHHHHHTSSSCEE
T ss_pred cCHHHHHHHHHh--ccCCC-CEEEeCHHHHHHHHHHHHHHHHHhHHhhcccCCeEEEEEEeeCChHHHHHHHHHcCCCce
Confidence 368888876554 58999 9999999999999999998885 378999999999999999999999 89
Q ss_pred EEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH---cCCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecC
Q 015304 81 FDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN---VGVN-LTTFDSVEELHKIRKWH----PKCDLLIRIKPP 152 (409)
Q Consensus 81 ~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~---~gv~-~~~vds~~el~~i~~~~----~~~~v~lRv~~~ 152 (409)
|||+|.+|+..++++|++++++++.+++|++++|+.|++ .|+. .++|||++||++|.+.+ +.++|+|||||.
T Consensus 147 ~dvaS~gEl~~al~aG~~p~~iIv~nG~K~~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~~g~~~~V~LRVnp~ 226 (666)
T 3nzq_A 147 LEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLA 226 (666)
T ss_dssp EEESSHHHHHHHHHHHTTSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTCCCCEEEEBCCS
T ss_pred EEEeCHHHHHHHHHcCCCCCcEEEEcCCCCHHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCCCceEEEEEEec
Confidence 999999999999999998854444445799999999985 4654 47999999999998764 467899999985
Q ss_pred CC-CCCCCCCC---CCcCCCCCcccHHHHHHHHHHc-CCe-EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q 015304 153 DD-SGAKHPLD---SKYGVDHHPQEIVPLLEAAEAS-GLS-VVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNK 226 (409)
Q Consensus 153 ~~-~~~~~~~~---srfGi~~~~~~~~~~~~~~~~~-~l~-l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~ 226 (409)
.+ .+..+.++ +|||++ .+++.++++.+++. .++ +.|||||+||++.+.+.|.++++++.++++.+++.|+ +
T Consensus 227 ~~~~~~~i~TG~~~SKFGi~--~~e~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~l~~~L~~~G~-~ 303 (666)
T 3nzq_A 227 SQGSGKWQSSGGEKSKFGLA--ATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKLGV-N 303 (666)
T ss_dssp SSCSSTTCSSSSSCCCSCBC--HHHHHHHHHHHHHTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTC-C
T ss_pred CCCCcCccccCCCCCcCcCC--HHHHHHHHHHHHhCCCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 43 33344443 799999 99999999988775 576 9999999999999999999999999999888888898 9
Q ss_pred CcEEeecCCCCcCCCC---------CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEE
Q 015304 227 MRVLDIGGGFSFTNSN---------TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRV 297 (409)
Q Consensus 227 ~~~ldiGGG~~~~~~~---------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~ 297 (409)
+++||+||||+++|.. .+++++|++.|...+++++...+. |.++|++||||++|++||+|+++|+++|.
T Consensus 304 l~~LDiGGGfgI~Y~~~~~~~~~s~~~~leeya~~I~~~l~~~~~~~~~--~~p~Ii~EPGRaiVa~aGvLvt~Vi~vK~ 381 (666)
T 3nzq_A 304 IQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGL--PHPTVITESGRAVTAHHTVLVSNIIGVER 381 (666)
T ss_dssp CCEEECCSCCCCCSSSSCSSSTTCCSSCHHHHHHHHHHHHHHHHHHHTC--CCCEEEECCHHHHHTTSEEEEEEEEEEEC
T ss_pred CCEEEeCCCcCCCcCCccccccccCCCCHHHHHHHHHHHHHHHHHHcCC--CCcEEEEecCHHHHHhhhEEEEEEEEEEe
Confidence 9999999999999853 257999999999999988754222 45679999999999999999999999986
Q ss_pred eCCe----------------------------------------------------------------------------
Q 015304 298 HGEM---------------------------------------------------------------------------- 301 (409)
Q Consensus 298 ~g~~---------------------------------------------------------------------------- 301 (409)
.+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~ 461 (666)
T 3nzq_A 382 NEYTVPTAPAEDAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQK 461 (666)
T ss_dssp CCCCCCCCCCTTSCHHHHHHHHHHHHHSSSSCSTTHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3210
Q ss_pred ---------------------eEEEEeCCcCCCccccccc-cccccccccccccccccCCCCCCceeEEEEccccCCC--
Q 015304 302 ---------------------RNYWINDGKYGSFDWVNYD-EAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAA-- 357 (409)
Q Consensus 302 ---------------------~~~~i~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~-- 357 (409)
.+|++|-++..++.. .|+ ++.++..|+.+. ++.+..++.|.+-||+|.
T Consensus 462 ~~~~~~~~~~~~~~~l~~~l~~~y~~n~S~fqslPD-~W~i~q~fpi~Pi~rl-------~e~p~~~~~l~diTCDsdG~ 533 (666)
T 3nzq_A 462 QLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPD-AWGIDQLFPVLPLEGL-------DQVPERRAVLLDITCDSDGA 533 (666)
T ss_dssp HCCTTSGGGHHHHHHHHHTTCEEEEESSCHHHHCTH-HHHSCCCCCEEESSCT-------TSCCCEEEEEEESCSSTTCB
T ss_pred HhhccccCChHHHHHHHHHHhHHheeehhhhccCcc-hhhhccccceeecccc-------CCCcceeeEEeccccCCCCc
Confidence 133333222111111 111 233333455543 234678999999999996
Q ss_pred --Cccc-----cCCCCCCCCCCC--EEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 358 --DEVF-----SGHKLPELEVTD--WLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 358 --D~l~-----~~~~lp~l~~GD--~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
+++. ..++||+++.|+ +|.|+.+|||+..++..+|.|+.|.+|.-
T Consensus 534 i~~fi~~~~~~~~l~lh~~~~~e~y~lg~Fl~GAYQe~lg~~HnLfg~~~~v~v 587 (666)
T 3nzq_A 534 IDHYIDGDGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587 (666)
T ss_dssp CCCEEETTEEESSEEECSCCTTSCCEEEECSCCSSCGGGCCCTTSCCCCEEEEE
T ss_pred hhhccCCCCccccccccccCCCCccEEEEEecchhhHHhccccccCCCCCEEEE
Confidence 2331 124566887765 89999999999999999999999966543
No 20
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.2e-52 Score=425.91 Aligned_cols=373 Identities=18% Similarity=0.276 Sum_probs=293.0
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCC----------CcceEEecCcCCcHHHHHHHHHc-----
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLP----------MIHPHYAVKCNPEPALLEALAAL----- 77 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~----------~~~i~yavKan~~~~vl~~l~~~----- 77 (409)
-++.+++++... ++++| |+||+|++.|++|+++|+++|+ +++++||+|||+++.|++.+.+.
T Consensus 48 v~l~eLa~~l~~--~~~gT-PlyV~D~d~L~~ni~~l~~af~~a~~~~~y~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~~ 124 (648)
T 3n2o_A 48 IQLSKIVKQLEE--RQLNV-PVLVRFPQILHQRVHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQREVVDEILASQAQLE 124 (648)
T ss_dssp EEHHHHHHHHHH--TTCCS-SEEEECHHHHHHHHHHHHHHHHHHHHHHTCSSCEEECEEGGGCCCHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHhh--cCCCC-CEEEEeHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEEEeecCcHHHHHHHHHhCCccc
Confidence 367788776544 58999 9999999999999999998885 46899999999999999999998
Q ss_pred --CCcEEEcCHHHHHHHHhCCCCCCc-EEEeCCCCCHHHHHHHHH---cCCc-EEEecCHHHHHHHHhHC----CCCeEE
Q 015304 78 --GSNFDCASRSEIEAVLALGVSPDR-IIYANPCKPVSHIKYAAN---VGVN-LTTFDSVEELHKIRKWH----PKCDLL 146 (409)
Q Consensus 78 --G~g~~vaS~~E~~~a~~~G~~~~~-Ii~~gp~k~~~~i~~a~~---~gv~-~~~vds~~el~~i~~~~----~~~~v~ 146 (409)
|.|+||+|.+|+..++++|+++++ |+++| +|++++|+.|++ .|+. .++|||++||++|.+.+ ++++|+
T Consensus 125 ~~g~GlDvaS~gEL~~al~aG~~~e~iIv~nG-~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g~~~~V~ 203 (648)
T 3n2o_A 125 TKQLGLEAGSKPELLAVLAMAQHASSVIVCNG-YKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVTPRLG 203 (648)
T ss_dssp TCCCEEEECSHHHHHHHHHHTSSSCCEEEECS-CCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTCCCEEE
T ss_pred cCCceEEecCHHHHHHHHHcCCCCCcEEEecC-CCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 589999999999999999999875 55555 699999999984 6765 47999999999998764 568999
Q ss_pred EEEecCCC-CCCCCCCC---CCcCCCCCcccHHHHHHHHHHcC-Ce-EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015304 147 IRIKPPDD-SGAKHPLD---SKYGVDHHPQEIVPLLEAAEASG-LS-VVGVAFHIGSAATKFAAYRGAIAAAKAVFETAA 220 (409)
Q Consensus 147 lRv~~~~~-~~~~~~~~---srfGi~~~~~~~~~~~~~~~~~~-l~-l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~ 220 (409)
||||++.. .+..+.++ +|||++ .+++.++++.+++.+ ++ +.|||||+||++.+.+.|.++++++.++++.++
T Consensus 204 LRInp~~~~~~~~i~TGg~~SKFGi~--~~e~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~ 281 (648)
T 3n2o_A 204 IRIRLASQGAGKWQASGGEKSKFGLS--ASQVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELR 281 (648)
T ss_dssp EEBCCSTTSTTTTCSSSSCCCCCCBC--HHHHHHHHHHHHHTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCccccCCCCCcCcCC--HHHHHHHHHHHHhCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998543 23334443 799999 999999999887764 65 999999999999999999999999999998888
Q ss_pred HcCCCCCcEEeecCCCCcCCCC---------CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEE
Q 015304 221 RLGNNKMRVLDIGGGFSFTNSN---------TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQ 291 (409)
Q Consensus 221 ~~g~~~~~~ldiGGG~~~~~~~---------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~ 291 (409)
+.|+ ++++||+||||+++|.. .+++++|++.|...+++++...+. |.++|++||||++|++||+|+++
T Consensus 282 ~~G~-~l~~LDiGGGfgI~Y~~~~~~~~~s~~~~leeya~~I~~~l~~~~~~~~~--~~p~Ii~EPGR~iVa~aGvLvt~ 358 (648)
T 3n2o_A 282 TLGA-NITYFDVGGGLAIDYDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQ--PMPVIISESGRSLTAHHAVLISN 358 (648)
T ss_dssp HTTC-CCCEEECCSCBCCCTTSCCCSSTTSCSCCHHHHHHHHHHHHHHHHHHHTC--CCCEEEECCHHHHHGGGEEEEEE
T ss_pred hcCC-CCcEEEeCCCcCCCcCCccccccccCCCCHHHHHHHHHHHHHHHHHhcCC--CCcEEEEecCHHHHHhhheEEEE
Confidence 8898 99999999999999853 157999999999999988753222 45679999999999999999999
Q ss_pred EEEEEEeCCe----------------------------------------------------------------------
Q 015304 292 IIGKRVHGEM---------------------------------------------------------------------- 301 (409)
Q Consensus 292 V~~~k~~g~~---------------------------------------------------------------------- 301 (409)
|+++|.....
T Consensus 359 Vi~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~ 438 (648)
T 3n2o_A 359 VIGTETYKPETVTEPEEDFPLLLNNMWRSWLNLHNGTDARALIEIYNDTQSDLAEVHSQFATGVLTLEHRAWAEQTSLRI 438 (648)
T ss_dssp EEEEECCCCCCCCCCCTTCCHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCCCcccccHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Confidence 9999963210
Q ss_pred ---------------------------eEEEEeCCcCCCccccccc-cccccccccccccccccCCCCCCceeEEEEccc
Q 015304 302 ---------------------------RNYWINDGKYGSFDWVNYD-EAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPT 353 (409)
Q Consensus 302 ---------------------------~~~~i~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~G~~ 353 (409)
..|++|-++..++ |-.|+ ++.++..|+.+.. +.+..++.+.+-|
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~n~S~fqsl-pD~W~i~q~fpi~Pi~rl~-------e~p~~~~~l~diT 510 (648)
T 3n2o_A 439 YYELNRLMSTKNRFHRPILDELSERLADKFFVNFSLFQSL-PDSWGIDQVFPVLPLSGLQ-------NAADRRAVMLDIT 510 (648)
T ss_dssp HHHHHHHSCTTSTTHHHHHHHHHHHTCEEEEESSCHHHHC-HHHHHHCCCCCEEESSCGG-------GTTSEEEEEEESS
T ss_pred HHHHHHHhhhccccCcHHHHHHHHHHhHHheeehhhhccC-cchhhhcCccceeeccccC-------CCcceeeEEeccc
Confidence 0011111110000 00011 1223333444432 3367899999999
Q ss_pred cCCC----Cccc-----cCCCCCCCCCCC--EEEEcCCCccccccCCCCCCCCCCcEEEE
Q 015304 354 CDAA----DEVF-----SGHKLPELEVTD--WLVFSEMGAYTRARGTNFNGYNTAAIPTY 402 (409)
Q Consensus 354 C~~~----D~l~-----~~~~lp~l~~GD--~l~~~~~GAY~~s~~~~fn~~~~p~~v~~ 402 (409)
|+|. +++. ..++||+++.|+ +|.|+.+|||+..++..+|.|+.|.+|.-
T Consensus 511 CDsdG~i~~f~~~~~~~~~l~lh~~~~~e~y~lg~fl~GAYQe~lg~~HnLfg~~~~v~v 570 (648)
T 3n2o_A 511 CDSDGAIDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVV 570 (648)
T ss_dssp SCTTCBCCCEEETTEEESSEEECCCCTTSCCEEEEESCCSSHHHHCCCGGGCCCCEEEEE
T ss_pred cCCCCchhhccCCCCCccceecCcCCCCCccEEEEEecchhhHHhccccccCCCCCEEEE
Confidence 9996 2221 124566887776 89999999999999999999999966543
No 21
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.5e-40 Score=326.16 Aligned_cols=313 Identities=16% Similarity=0.139 Sum_probs=240.8
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCc----CCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKC----NPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa----n~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
|+++||+++|++|++++++.+++++++|++|| |+++.|++.+.++|+ +|+|+|.+|++.++++|+++ +|++.|+
T Consensus 4 ~~~~idl~~l~~N~~~~~~~~~~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~~-~il~~~~ 82 (361)
T 2dy3_A 4 LTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQ-EVLCWIW 82 (361)
T ss_dssp EEEEECHHHHHHHHHHHHHHHTTSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCS-EEEECCC
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCcEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCC-CEEEECC
Confidence 99999999999999999999988899999999 789999999999997 99999999999999999975 5777777
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC-CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-cC
Q 015304 108 CKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHP-KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-SG 185 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~-~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~~ 185 (409)
+++++++.++++++. ++|||++++++|.+.++ ..++.|||+++ .+|||++ ++++.++++.+++ ++
T Consensus 83 -~~~~~~~~~~~~~i~-~~vds~~~l~~l~~~a~~~~~v~l~vdtG---------~~R~G~~--~~~~~~~~~~~~~~~~ 149 (361)
T 2dy3_A 83 -TPEQDFRAAIDRNID-LAVISPAHAKALIETDAEHIRVSIKIDSG---------LHRSGVD--EQEWEGVFSALAAAPH 149 (361)
T ss_dssp -CTTSCHHHHHTTTCE-EEECSHHHHHHHHTSCCSCEEEEEEBCCS---------SCSSSBC--HHHHHHHHHHHHTCTT
T ss_pred -CCHHHHHHHHHcCCE-EEECCHHHHHHHHHhCccCCEEEEEEeCC---------CCCCCCC--HHHHHHHHHHHHhCCC
Confidence 777899999999994 89999999999998776 45677888752 3899999 9999999998877 58
Q ss_pred CeEEEEEEeeCCCCCCH-HHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 015304 186 LSVVGVAFHIGSAATKF-AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNE 264 (409)
Q Consensus 186 l~l~Glh~H~gs~~~~~-~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 264 (409)
+++.|+|+|++++.... ..+.++++++.++.+.+++.|+ ++.++|+||+.++.+..+ ..+++++.++..|...
T Consensus 150 l~~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~g~s~~~~~~~~----~~~~~vR~G~~l~g~~- 223 (361)
T 2dy3_A 150 IEVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGL-ECPVNHVCNSPAFLTRSD----LHMEMVRPGLAFYGLE- 223 (361)
T ss_dssp EEEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTC-CCCSCBCCCHHHHHHCGG----GCTTEECCCGGGGTCC-
T ss_pred CCEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCC-CCCeEEEeCCHHHhcCcc----cCCCEEecchHhhCCC-
Confidence 99999999999986422 2366788888888888888888 888999999887754321 1234566666666422
Q ss_pred CCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccccccccC
Q 015304 265 LLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTS 338 (409)
Q Consensus 265 ~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (409)
|... +||| ++++++++|+|+++|+. |+ +.+|.....+.....+.+|++++++ .+++... +.
T Consensus 224 ----~~~~--~e~~---~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r--~l~~~~~-v~- 290 (361)
T 2dy3_A 224 ----PVAG--LEHG---LKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPR--HAQGKFS-VT- 290 (361)
T ss_dssp ----SSTT--CCCS---CCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCG--GGTTTCE-EE-
T ss_pred ----cccc--cCCC---ceeEEEEEEEEEEEEEcCCCCEEeeCCEEECCCCCEEEEEeeccccCcCc--ccCCCce-EE-
Confidence 2211 2777 89999999999999973 32 2344444444455667788888765 3433211 11
Q ss_pred CCCCCceeEEEEccccCCCCccccCCC-CC-CCCCCCEEEEcCCCcc
Q 015304 339 KGLSRTYNSKVFGPTCDAADEVFSGHK-LP-ELEVTDWLVFSEMGAY 383 (409)
Q Consensus 339 ~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp-~l~~GD~l~~~~~GAY 383 (409)
..+++++|+|++|| |+++.+++ +| ++++||+|+|.+.+..
T Consensus 291 ---i~g~~~~ivG~vcm--D~~~~d~~~~~~~~~~GD~v~~~g~~~~ 332 (361)
T 2dy3_A 291 ---IDGLDYPQVGRVCM--DQFVISLGDNPHGVEAGAKAVIFGENGH 332 (361)
T ss_dssp ---ETTEEEEEESCCCS--SCEEEEEETCTTCCCTTCEEEEESTTSC
T ss_pred ---ECCEEeeEeeEEec--ccEEEEccCCCCCCCCCCEEEEEcCCCC
Confidence 13478999999997 99999986 89 9999999999997743
No 22
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.4e-40 Score=326.09 Aligned_cols=318 Identities=13% Similarity=0.113 Sum_probs=248.0
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCc----CCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcE
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKC----NPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRI 102 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa----n~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~I 102 (409)
.... |+++||+++|++|++++++.+++++++|++|| |+++.|++.+.++|+ +|+|+|.+|+..++++|+++ +|
T Consensus 8 ~~~~-~~~~idl~~i~~N~~~l~~~~~~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~-~I 85 (384)
T 1xfc_A 8 PGLL-AEAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITA-PV 85 (384)
T ss_dssp ---C-EEEEEEHHHHHHHHHHHHHHHTTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCS-CE
T ss_pred CCCC-eEEEEeHHHHHHHHHHHHHhCCCCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCC-CE
Confidence 3456 99999999999999999999888999999999 889999999999998 99999999999999999975 68
Q ss_pred EEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCc---ccHH
Q 015304 103 IYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHP---QEIV 175 (409)
Q Consensus 103 i~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~---~~~~ 175 (409)
++.|+ +++++++.++++++. ++|||+++++.|.+.+ +..+|.|+|+++ .+|||++ + +++.
T Consensus 86 l~~g~-~~~~~~~~~~~~~i~-~~vds~~~l~~l~~~a~~~~~~~~V~l~vdtG---------~~R~G~~--~~~~~~~~ 152 (384)
T 1xfc_A 86 LAWLH-PPGIDFGPALLADVQ-VAVSSLRQLDELLHAVRRTGRTATVTVKVDTG---------LNRNGVG--PAQFPAML 152 (384)
T ss_dssp EECCC-CTTCCCHHHHHTTCE-EEECSHHHHHHHHHHHHHHCCCEEEEEEBCSS---------CCSSSBC--TTTHHHHH
T ss_pred EEEcC-CCHHHHHHHHHcCcE-EEECCHHHHHHHHHHHHhcCCceEEEEEEECC---------CCccCCC--cCcHHHHH
Confidence 89998 788899999999995 8999999999998753 456889999863 3899999 8 8888
Q ss_pred HHHHHHHH-cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHH
Q 015304 176 PLLEAAEA-SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASII 253 (409)
Q Consensus 176 ~~~~~~~~-~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i 253 (409)
++++.+++ +++++.|||+|++++.. +...+..+++++.++.+.+++.|+ +++++|+|||+++.+..+ ..++++
T Consensus 153 ~~~~~i~~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~l~~g~s~~~~~~~~----~~~~~v 227 (384)
T 1xfc_A 153 TALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGV-RFEVAHLSNSSATMARPD----LTFDLV 227 (384)
T ss_dssp HHHHHHHHTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTC-CCSEEECBCHHHHHHCGG----GCCSEE
T ss_pred HHHHHHHhCCCCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCC-CCCeEEEecCHHHhcCcc----ccCCEE
Confidence 99988876 58999999999999864 334566788888888888888888 889999999988765321 123455
Q ss_pred HHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCcccccccccccccc
Q 015304 254 KEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCT 327 (409)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~ 327 (409)
+.++..|... |..++ +| +.+++|++++|+|+++|+. |+ +.+|.....+.....+.+|.+++++
T Consensus 228 R~G~~lyg~~-----~~~~~-~e---~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r-- 296 (384)
T 1xfc_A 228 RPGIAVYGLS-----PVPAL-GD---MGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFR-- 296 (384)
T ss_dssp CCSGGGGTCC-----SSGGG-CC---TTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCG--
T ss_pred ccCHHhHCCC-----ccccc-cc---CCCceEEEEEEEEEEEEEcCCCCEEEeCCEEECCCCCEEEEEeeccccCccc--
Confidence 6666666321 22111 24 3589999999999999974 32 2345444444555667788888765
Q ss_pred ccccccccccCCCCCCceeEEEEccccCCCCccccCCC-CC-CCCCCCEEEEcCCCcc
Q 015304 328 PLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LP-ELEVTDWLVFSEMGAY 383 (409)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp-~l~~GD~l~~~~~GAY 383 (409)
.+++... +. ..+++++|+|++|| |+++.++. +| ++++||+|+|+++|+|
T Consensus 297 ~l~~~~~-v~----~~g~~~~ivG~vcm--D~~~~d~~~~p~~~~~GD~v~l~g~~~~ 347 (384)
T 1xfc_A 297 SLGGRLE-VL----INGRRCPGVGRICM--DQFMVDLGPGPLDVAEGDEAILFGPGIR 347 (384)
T ss_dssp GGTTTCE-EE----ETTEEEEEESCCCS--SCEEEEEESSSCCCCTTCEEEEECSSTT
T ss_pred ccCCCCe-EE----ECCEEeeEeeEecc--ceEEEEccCCCCCCCCCCEEEEEeCCCC
Confidence 3433211 11 13478999999999 99999995 89 9999999999999988
No 23
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=100.00 E-value=1.5e-39 Score=322.10 Aligned_cols=320 Identities=13% Similarity=0.114 Sum_probs=254.5
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhC-CCcceEEecCc----CCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcE
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKL-PMIHPHYAVKC----NPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRI 102 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~-~~~~i~yavKa----n~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~I 102 (409)
..+ |+++||+++|++|++.+++.+ ++++++|++|| +.++.|++.+.++|+ +|+|+|.+|+..++++|+++ +|
T Consensus 9 ~~~-~~~~idl~ai~~N~~~l~~~~~~~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~-~i 86 (391)
T 2vd8_A 9 YRD-TWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITA-PI 86 (391)
T ss_dssp CSS-CEEEEEHHHHHHHHHHHHHHSCTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCS-CE
T ss_pred CCC-eEEEEcHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCC-ce
Confidence 457 999999999999999999999 57899999999 578999999999998 89999999999999999975 46
Q ss_pred EEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCc-ccHHHH
Q 015304 103 IYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHP-QEIVPL 177 (409)
Q Consensus 103 i~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~-~~~~~~ 177 (409)
++.|+ +++++++.++++++. ++|||+++++.|.+ + +..+|.|+|+++ .+|||++ + +++.++
T Consensus 87 l~~g~-~~~~~~~~~~~~~i~-~~vds~~~l~~l~~-a~~~~~~~~V~lkvdtG---------m~R~G~~--~~~e~~~~ 152 (391)
T 2vd8_A 87 LVLGP-SPPRDINVAAENDVA-LTVFQXEWVDEAIX-LWDGSSTMXYHINFDSG---------MGRIGIR--ERXELXGF 152 (391)
T ss_dssp EECSC-CCGGGHHHHHHTTEE-EECCCHHHHHHHHH-HCCSSCCEEEEEEBCSS---------CCSSSBC--CHHHHHHH
T ss_pred EEecC-CChHHHHHHHHCCeE-EEEcCHHHHHHHHH-HHhcCCceEEEEEEeCC---------CCCCCCC--chhhHHHH
Confidence 67776 788999999999985 89999999999987 4 235788888752 3899998 7 789899
Q ss_pred HHHHHH-cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHH
Q 015304 178 LEAAEA-SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKE 255 (409)
Q Consensus 178 ~~~~~~-~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~ 255 (409)
++.+++ +++++.|+|+|++++.. +...+..+++++.++.+.+++.|+ .+.++++||+.++.+..+.. ++++|.
T Consensus 153 ~~~i~~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~~g~-~~~~~~~gnS~g~~~~~~~~----~~~vR~ 227 (391)
T 2vd8_A 153 LXSLEGAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGV-DPXFVHTANSAATLRFQGIT----FNAVRI 227 (391)
T ss_dssp HHHHTTCTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTC-CCCSEECCCHHHHTTCTTCC----TTEEEE
T ss_pred HHHHhhcCCceEEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHhccC-CcceEEecchhHhhcCcccC----CCEEeh
Confidence 988876 58999999999999864 333466788899888888888888 78889999998887643322 345666
Q ss_pred HHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCcccccccccccccccc
Q 015304 256 ALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPL 329 (409)
Q Consensus 256 ~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l 329 (409)
++..|... |.+. + .|||++.+.++++|+|+|+.+|+. |+ +.+|.....+...+.+.+|++++++ .+
T Consensus 228 G~~lyg~~---p~~~--~-~~~g~~~l~pa~~l~~~V~~vk~~~~G~~v~yg~~~~~~~~~~~a~v~~GyaDg~~r--~l 299 (391)
T 2vd8_A 228 GIAMYGLS---PSVE--I-RPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLR--RL 299 (391)
T ss_dssp STTTTTCC---SCTT--T-GGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCG--GG
T ss_pred hHHhcCCC---Cccc--c-ccccccccceeEEEEEEeeEEEEcCCCCeEeeCCEEEcCCCcEEEEEeeeeeccccc--cc
Confidence 77666422 2122 2 578999999999999999999974 32 2345555455556677889888776 34
Q ss_pred ccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCC-ccccc
Q 015304 330 TLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMG-AYTRA 386 (409)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~G-AY~~s 386 (409)
++. .+.. .+++++|+|++|| |+++.|+ +|++++||+|+|++.+ +|+.+
T Consensus 300 ~~~--~v~v----~g~~~~ivG~vcm--D~~~vd~-~~~~~~GD~v~l~g~~~~~~~~ 348 (391)
T 2vd8_A 300 QGF--EVLV----NGXRVPIVGRVTM--DQFMIHL-PCEVPLGTXVTLIGRQGDEYIS 348 (391)
T ss_dssp TTC--EEEE----TTEEEEEESCCCS--SCEEEEE-SSCCCTTCEEEEEEEETTEEEC
T ss_pred CCC--eEEE----CCeecceecceec--ceeEeec-CCCCCCCCEEEEECCCCCCCCC
Confidence 332 2211 3478999999998 9999999 7899999999999864 55554
No 24
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=100.00 E-value=2.8e-39 Score=319.51 Aligned_cols=314 Identities=12% Similarity=0.103 Sum_probs=246.6
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCc-ceEEecCc----CCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMI-HPHYAVKC----NPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~-~i~yavKa----n~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
|+++||+++|++|++.+++.++++ +++|++|| |.++.|++.+.++|+ +|+|+|.+|+..++++|+++ +|++.|
T Consensus 8 ~~~~idl~ai~~N~~~l~~~~~~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~-~Il~~g 86 (388)
T 1bd0_A 8 TWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEA-PILVLG 86 (388)
T ss_dssp EEEEEEHHHHHHHHHHHHHHSCTTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCS-CEEECS
T ss_pred eEEEEcHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCC-CEEEEC
Confidence 899999999999999999999988 99999999 889999999999998 99999999999999999975 688888
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC---CCCeEEEEEecCCCCCCCCCCCCCcCCCCCc-ccHHHHHHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH---PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHP-QEIVPLLEAAE 182 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~---~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~-~~~~~~~~~~~ 182 (409)
+ +++++++.++++++. ++|||+++++.|.+.+ +..+|+|+|+++ .+|||++ + +++.++++.++
T Consensus 87 ~-~~~~~~~~~~~~~i~-~~vds~~~l~~l~~~a~~~~~~~V~lkvdtG---------m~R~G~~--~~~e~~~~~~~i~ 153 (388)
T 1bd0_A 87 A-SRPADAALAAQQRIA-LTVFRSDWLEEASALYSGPFPIHFHLKMDTG---------MGRLGVK--DEEETKRIVALIE 153 (388)
T ss_dssp C-CCGGGHHHHHHTTEE-EEECCHHHHHHHHHHCCCSSCEEEEEEBCSS---------SCSSSBC--SHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHcCCE-EEECCHHHHHHHHHHhccCCCeEEEEEEcCC---------CCcCCCC--CHHHHHHHHHHHH
Confidence 8 888999999999985 8999999999998875 335788888763 3899998 7 78999999887
Q ss_pred H-cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHc-CCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHh
Q 015304 183 A-SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARL-GNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHA 259 (409)
Q Consensus 183 ~-~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~-g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~ 259 (409)
+ +++++.|||+|++++.. +...+.++++.+.+ +++. |+ ++.++|+||+.++.+..+. .++++|.++..
T Consensus 154 ~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~----l~~~~g~-~~~~~~~g~S~~~~~~~~~----~~~~vR~G~~l 224 (388)
T 1bd0_A 154 RHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLH----MLEWLPS-RPPLVHCANSAASLRFPDR----TFNMVRFGIAM 224 (388)
T ss_dssp HSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHH----HHTTCSS-CCSEEECCCHHHHHHCTTS----CTTEEEECGGG
T ss_pred hCCCceEEEEEEccCCCCCCCcHHHHHHHHHHHH----HHhhcCC-CCCeEEecCCHHHhcCccc----CCCEEehhHHH
Confidence 6 58999999999999874 22234455555544 4444 77 7889999999888654322 23556777766
Q ss_pred hCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCcccccccccccccccccccc
Q 015304 260 YFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLAS 333 (409)
Q Consensus 260 ~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~ 333 (409)
|... |..++.+|| ++.+.++++|+|+|+.+|+. |+ +++|.....+.....+.+|++++++ .+++.
T Consensus 225 yG~~-----p~~~~~~~~-~~~l~pa~~l~~~V~~vk~~~~G~~v~Yg~~~~~~~~~~~a~v~~GyaDg~~r--~l~~~- 295 (388)
T 1bd0_A 225 YGLA-----PSPGIKPLL-PYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLR--RLQHF- 295 (388)
T ss_dssp GTCC-----SCGGGGGGC-SSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCG--GGGGC-
T ss_pred HCCC-----ccccccccc-ccCcceEEEEEEEEEEEEEcCCCCeEecCCeEECCCCcEEEEEeeeeccCccc--cccCC-
Confidence 6421 221232355 77899999999999999974 32 2456555555556678889998776 34432
Q ss_pred ccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCC-ccccc
Q 015304 334 SLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMG-AYTRA 386 (409)
Q Consensus 334 ~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~G-AY~~s 386 (409)
.+.. .+++++|+|++|| |+++.|+. |++++||+|+|++.+ +|+.+
T Consensus 296 -~v~v----~g~~~~ivG~vcm--D~~~vdv~-~~~~~GD~v~l~g~~~~~~~~ 341 (388)
T 1bd0_A 296 -HVLV----DGQKAPIVGRICM--DQCMIRLP-GPLPVGTKVTLIGRQGDEVIS 341 (388)
T ss_dssp -EEEE----TTEEEEEESCCCS--SCEEEECS-SCCCTTCEEEEEEEETTEEEC
T ss_pred -cEeE----CCEEeeEEeeccc--ceEEEECC-CCCCCCCEEEEecCCCCCCCC
Confidence 2211 3478999999998 99999998 889999999999865 55554
No 25
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=100.00 E-value=4.1e-39 Score=318.45 Aligned_cols=319 Identities=16% Similarity=0.126 Sum_probs=250.1
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCc----CCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKC----NPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa----n~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
..+ |+++||+++|++|++++++.+++++++|++|| ++++.|++.+.+.|+ +|+|+|.+|+..++++|+++ +|+
T Consensus 5 ~~~-p~~~idl~~i~~N~~~l~~~~~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~~-~il 82 (386)
T 1vfs_A 5 PTR-VYAEIDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQG-RIM 82 (386)
T ss_dssp CSS-EEEEEEHHHHHHHHHHHHTTSTTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCS-EEE
T ss_pred CCC-eEEEEeHHHHHHHHHHHHHhCCCcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCC-CEE
Confidence 567 99999999999999999998888999999999 679999999999998 89999999999999999975 566
Q ss_pred EeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHH--
Q 015304 104 YANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPL-- 177 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~-- 177 (409)
+.|+. .+++++.++++++. ++|||+++++.|.+.+ +..+|.|+|+++ .+|||++ ++++.++
T Consensus 83 ~~~~~-~~~~~~~~~~~~i~-~~vds~~~l~~l~~~a~~~~~~~~V~l~vdtG---------~~R~G~~--~~e~~~~~~ 149 (386)
T 1vfs_A 83 CWLWT-PGGPWREAIETDID-VSVSGMWALDEVRAAARAAGRTARIQLKADTG---------LGRNGCQ--PADWAELVG 149 (386)
T ss_dssp ECCCC-TTCCHHHHHHTTCE-EEECSHHHHHHHHHHHHHHTSCEEEEEEBCSS---------CCSSSBC--HHHHHHHHH
T ss_pred EECCC-CHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHhcCCceEEEEEEcCC---------CCCCCCC--HhHHHHHHH
Confidence 67764 56789999999995 8999999999998753 456789999863 3899999 8887555
Q ss_pred -HHHHHH-cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHH
Q 015304 178 -LEAAEA-SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIK 254 (409)
Q Consensus 178 -~~~~~~-~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~ 254 (409)
++.+++ +++++.|||+|++++.. +...+..+++++.++.+.+++.|+ ++.++++||+.++.+..+ .-+++++
T Consensus 150 ~~~~i~~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~~g~-~~~~~~~g~s~g~~~~~~----~~~~~vR 224 (386)
T 1vfs_A 150 AAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGV-DPEVRHIANSPATLTLPE----THFDLVR 224 (386)
T ss_dssp HHHHHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTC-CCSEEEEECHHHHHHCGG----GCSSEEE
T ss_pred HHHHHHhCCCceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCCHHHHcCcc----ccCCEEE
Confidence 777766 58999999999999864 223456788888888888888888 888999999988764321 1234566
Q ss_pred HHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccc
Q 015304 255 EALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTP 328 (409)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 328 (409)
.++..|... |..++..| +|+.+.++++++|+|+.+|+. |+ +.+|.....+.....+.+|.+++++ .
T Consensus 225 ~G~~lyg~~-----p~~~~~~~-~~~~l~pa~~l~a~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r--~ 296 (386)
T 1vfs_A 225 TGLAVYGVS-----PSPELGTP-AQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPR--N 296 (386)
T ss_dssp ECGGGGTCC-----SCGGGCCT-TTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCG--G
T ss_pred eChhhhCCC-----cccccccc-cccCCceEEEEEEEEEEEEEcCCCCeEeeCCEEECCCCCEEEEEecccccCccc--c
Confidence 666666432 21112223 578899999999999999974 32 2345555555556677889888766 3
Q ss_pred cccccccccCCCCCCceeEEEEccccCCCCccccCCCCCCCC-CCCEEEEcCCCcc
Q 015304 329 LTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELE-VTDWLVFSEMGAY 383 (409)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~-~GD~l~~~~~GAY 383 (409)
+++... +. ..+++++|+|++|| |+++.++.+ +++ +||+|+|+++|+|
T Consensus 297 l~~~~~-v~----i~g~~~~ivG~vcm--D~~~~dv~~-~~~~~GD~v~l~g~~~~ 344 (386)
T 1vfs_A 297 ASGRGP-VL----VAGKIRRAAGRIAM--DQFVVDLGE-DLAEAGDEAVILGDAER 344 (386)
T ss_dssp GTTTCE-EE----ETTEEEEBCSCCCS--SCEEEEEET-CCCCTTCEEEEECCGGG
T ss_pred cCCCCE-EE----ECCEEeeEeeEeec--CcEEEEccC-CCCCCCCEEEEEeCCCC
Confidence 443211 11 13478999999998 999999987 899 9999999999998
No 26
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=100.00 E-value=4.1e-36 Score=296.33 Aligned_cols=321 Identities=13% Similarity=0.054 Sum_probs=234.1
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCc----CCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKC----NPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa----n~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
..+ |+++||+++|++|++++++.+++++++|++|| +.++.|++.+.+.|+ +|+|+|.+|+..++++|+++ +|+
T Consensus 7 ~~~-~~~~idl~~l~~N~~~l~~~~~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~-~il 84 (380)
T 3co8_A 7 HRS-TRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDD-FIL 84 (380)
T ss_dssp TSS-CEEEECHHHHHHHHHHHHHHHCCSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCC-CEE
T ss_pred cCC-eEEEEcHHHHHHHHHHHHHhCCCcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCC-CEE
Confidence 456 99999999999999999998888999999999 678999999999998 89999999999999999975 466
Q ss_pred EeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC--CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHH
Q 015304 104 YANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHP--KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAA 181 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~--~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~ 181 (409)
+.|+ +++++++.++++++. ++|||+++++.|.+.++ ..+|.|+|+++ .+|||++. ++++.++++.+
T Consensus 85 ~~g~-~~~~~~~~~~~~~i~-~~vds~~~l~~l~~~a~~~~~~V~l~vdtG---------~~R~G~~~-~ee~~~~~~~i 152 (380)
T 3co8_A 85 ILGP-IDVKYAPIASKYHFL-TTVSSLDWLKSADKILGKEKLSVNLAVDTG---------MNRIGVRS-KKDLKDEIEFL 152 (380)
T ss_dssp ECSC-CCGGGHHHHHHTTCE-EEECCHHHHHHHHHHCTTCCEEEEEEBCSS---------SCSSSBCS-HHHHHHHHHHH
T ss_pred EECC-CCHHHHHHHHHCCCE-EEECCHHHHHHHHHhcccCCceEEEEEcCC---------CCCCCCCC-HHHHHHHHHHH
Confidence 6687 788999999999985 89999999999998765 34577777652 38999951 47888889888
Q ss_pred HH--cCCeEEEEEEeeCCCCCCHHH-HHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHH
Q 015304 182 EA--SGLSVVGVAFHIGSAATKFAA-YRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALH 258 (409)
Q Consensus 182 ~~--~~l~l~Glh~H~gs~~~~~~~-~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~ 258 (409)
++ +++++.|||+|++++....+. +.++++.+.++.+. +. ...++++|++.++.+..+... ...+++|.+..
T Consensus 153 ~~~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~~~~~----~~-~~~~~~~~nS~g~~~~~~~~~-~~~~~vR~G~~ 226 (380)
T 3co8_A 153 QEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDG----LI-MPRYVHVMNSGAAMYHSKELP-GCNSIARVGTV 226 (380)
T ss_dssp HHCTTTEEEEEEECCCC---------CHHHHHHHHHHHTT----SC-CCSEEECBCHHHHHHCGGGCT-TSCSEEEESTT
T ss_pred HhhCCCceEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHhc----cC-CCCcEEEeCCHHHhcCccccc-CCCceEcccHh
Confidence 76 589999999999998643323 35566666554432 22 345678877655543211100 02234555554
Q ss_pred hhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccc
Q 015304 259 AYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLA 332 (409)
Q Consensus 259 ~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~ 332 (409)
.|. .. |... + .|| ++.+.++++++|+|+.+|+. |+ +.+|.....+.....+.+|+++.++ .+ +.
T Consensus 227 lyG-~~--p~~~--~-~~~-~~~l~pa~~l~a~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r--~l-~~ 296 (380)
T 3co8_A 227 VYG-VE--PSEG--V-LGP-IDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLA--EY-QD 296 (380)
T ss_dssp TTT-CC--TTTT--S-SSC-GGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCG--GG-TT
T ss_pred hhC-cC--CCcc--c-ccc-ccCcceeEEEEEEEEEEEEcCCCCeEeeCCEEECCCCCEEEEEecCccccccc--cc-CC
Confidence 442 11 1112 2 355 77899999999999999974 32 2345555555566778889888776 33 32
Q ss_pred cccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCC-Ccccccc
Q 015304 333 SSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEM-GAYTRAR 387 (409)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~-GAY~~s~ 387 (409)
..+.. .+++++|+|++|| |+++.+++. ++++||+|+|.+. |+|..+.
T Consensus 297 -~~v~i----~g~~~~ivG~vcm--D~~~vdv~~-~~~~GD~v~l~g~~~~~~~~~ 344 (380)
T 3co8_A 297 -FQLLI----DGQKCRQVGQIAM--DQMMVALPH-EYPIGTEVTLIGKSGKYENTL 344 (380)
T ss_dssp -CEEEE----TTEEEEEESCCCS--SCEEEEESS-CCCTTCEEEEEEEETTEEECH
T ss_pred -CeEEE----CCEEeEEeccccc--ceEEEECCC-CCCCCCEEEEEeCCCCCCCCH
Confidence 21211 3478999999998 999999987 8999999999995 8887764
No 27
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=100.00 E-value=2.9e-34 Score=280.99 Aligned_cols=306 Identities=13% Similarity=0.093 Sum_probs=225.3
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCc----CCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEE-EeCC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKC----NPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRII-YANP 107 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa----n~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii-~~gp 107 (409)
|+++||+++|++|++++++. ++++++|++|| +.++.|++.+.+.+.+|+|+|.+|+..++++|+++ +|+ +.|+
T Consensus 4 ~~~~idl~~l~~N~~~l~~~-~~~~l~~vvKanaYG~g~~~i~~~l~~~~~~~~va~~~Ea~~~~~~G~~~-~Il~~~g~ 81 (357)
T 1rcq_A 4 ARALIDLQALRHNYRLAREA-TGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQ-PILLLEGF 81 (357)
T ss_dssp CEEEEEHHHHHHHHHHHHHH-HCSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCS-CEEETTCC
T ss_pred eEEEEeHHHHHHHHHHHHhC-CCCeEEEEEEeccccCCHHHHHHHHHHhCCEEEEccHHHHHHHHhCCcCC-CEEEEeCC
Confidence 89999999999999999998 88999999999 78999999998774599999999999999999975 677 7787
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC---CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-
Q 015304 108 CKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH---PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA- 183 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~---~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~- 183 (409)
+++++++.++++++. ++|||+++++.|.+ + +..+|+|+|+++ .+|||++ ++++.++++.+++
T Consensus 82 -~~~~~~~~~~~~~i~-~~vds~~~l~~l~~-a~~~~~~~V~l~vdtG---------~~R~G~~--~~~~~~~~~~i~~~ 147 (357)
T 1rcq_A 82 -FEASELELIVAHDFW-CVVHCAWQLEAIER-ASLARPLNVWLKMDSG---------MHRVGFF--PEDFRAAHERLRAS 147 (357)
T ss_dssp -SSGGGHHHHHHTTEE-EEECSHHHHHHHHH-CCCSSCEEEEEEBCSS---------SCSSSBC--HHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHcCCE-EEECCHHHHHHHHh-hccCCCeEEEEEEcCC---------CCCCCCC--HHHHHHHHHHHHhC
Confidence 788999999999984 89999999999987 4 235788888763 3899999 9999999998876
Q ss_pred cCCeEEEEEEeeCCCCCCH-HHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhCC
Q 015304 184 SGLSVVGVAFHIGSAATKF-AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFP 262 (409)
Q Consensus 184 ~~l~l~Glh~H~gs~~~~~-~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~~ 262 (409)
+++++.|||+|++++.... ..+.++++.+.++. +.+.. + +++|++-++....+. ..++++.+...|..
T Consensus 148 ~~l~l~Gl~th~~~~~~~~~~~~~~~~~~f~~~~---~~l~~-~---~s~~ns~~~~~~~~~----~~~~vR~G~~lyg~ 216 (357)
T 1rcq_A 148 GKVAKIVMMSHFSRADELDCPRTEEQLAAFSAAS---QGLEG-E---ISLRNSPAVLGWPKV----PSDWVRPGILLYGA 216 (357)
T ss_dssp TCEEEEEEECCCSSTTCTTCTHHHHHHHHHHHHH---TTCCS-C---EECCCHHHHHHCTTS----CCSEECCCGGGGTC
T ss_pred CCCcEEEEEEcccCCCCCCcHHHHHHHHHHHHHH---hccCC-C---eEEEeCHHhhcCccc----CCCEEccCHHhhCC
Confidence 5899999999999986433 23345666655543 23322 2 454443222111111 12345555555532
Q ss_pred CCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccccccc
Q 015304 263 NELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLT 336 (409)
Q Consensus 263 ~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (409)
. |... + .++ ++.+.++++++|+|+++|+. |+ +.+|.+...+.....+.+|.+++++ .+++.. .+
T Consensus 217 ~---~~~~--~-~~~-~~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~dg~~r--~l~~~~-~v 286 (357)
T 1rcq_A 217 T---PFER--A-HPL-ADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPR--HAADGT-LV 286 (357)
T ss_dssp C---SSSS--C-CTT-GGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCT--TCCTTC-EE
T ss_pred C---cccc--c-ccc-cCCCceEEEEEEEEEEEEEcCCCCEEccCCeEECCCCeEEEEEEeccccCccc--ccCCCC-EE
Confidence 1 1111 1 234 67789999999999999974 32 2344444444445667788888775 343321 11
Q ss_pred cCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCCC
Q 015304 337 TSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEMG 381 (409)
Q Consensus 337 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~G 381 (409)
. ..+++++++|++|| |+++.++. +|++++||.|+|.+.+
T Consensus 287 ~----i~g~~~~ivG~vcm--D~~~vd~~~~~~~~~GD~v~l~~~~ 326 (357)
T 1rcq_A 287 F----IDGKPGRLVGRVSM--DMLTVDLTDHPQAGLGSRVELWGPN 326 (357)
T ss_dssp E----ETTEEEEBCSCCCS--SCEEEECTTCTTCCTTCEEEEESSS
T ss_pred E----ECCEEeEEeeEEec--ceEEEECCCCCCCCCCCEEEEECCC
Confidence 1 13478999999999 99999986 8899999999999976
No 28
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=100.00 E-value=1.2e-33 Score=278.43 Aligned_cols=310 Identities=12% Similarity=0.098 Sum_probs=231.3
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCc----CCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEE-E
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKC----NPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRII-Y 104 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKa----n~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii-~ 104 (409)
++ |++++|+++|++|++++++.+++++++|++|| +..+.|++.+.+ ..+|+|+|.+|++.++++|+++ +|+ +
T Consensus 22 ~~-p~~~idl~al~~N~~~l~~~~~~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~-~Il~~ 98 (379)
T 2rjg_A 22 QA-ATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITK-PVLLL 98 (379)
T ss_dssp CC-SEEEEEHHHHHHHHHHHHHHSTTSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCS-CEEET
T ss_pred CC-eEEEEeHHHHHHHHHHHHHhCCCCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCC-CEEEE
Confidence 67 99999999999999999999989999999999 789999999988 6699999999999999999975 677 6
Q ss_pred eCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH--CCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHH
Q 015304 105 ANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKW--HPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAE 182 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~--~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~ 182 (409)
.|+ +++++++.++++++. ++|||+++++.|.+. .+..+|.|+||++ .+|||++ ++++.++++.++
T Consensus 99 ~g~-~~~~~~~~~~~~~i~-~~vds~~~l~~l~~a~~~~~~~V~l~vdtG---------m~R~G~~--~~e~~~~~~~i~ 165 (379)
T 2rjg_A 99 EGF-FDARDLPTISAQHFH-TAVHNEEQLAALEEASLDEPVTVWMKLDTG---------MHRLGVR--PEQAEAFYHRLT 165 (379)
T ss_dssp TCC-SCGGGHHHHHHTTEE-EEECSHHHHHHHHHCCCSSCBCEEEEBCSS---------CCSSSBC--HHHHHHHHHHHT
T ss_pred ECC-CCHHHHHHHHHcCcE-EEECCHHHHHHHHhhCCCCCeEEEEEECCC---------CCccCCC--HHHHHHHHHHHH
Confidence 665 788999999999985 899999999999872 1235789999863 3899999 999999999887
Q ss_pred H-cC-CeEEEEEEeeCCCCCCH-HHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHh
Q 015304 183 A-SG-LSVVGVAFHIGSAATKF-AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHA 259 (409)
Q Consensus 183 ~-~~-l~l~Glh~H~gs~~~~~-~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~ 259 (409)
+ ++ +++.|||+|++++.... ..+.++++++.++.+ .+. .. +++|++.++....+ .-.+++|.+...
T Consensus 166 ~~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~---~l~---~~-~s~gnS~~~~~~~~----~~~~~vR~G~~l 234 (379)
T 2rjg_A 166 QCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCE---GKP---GQ-RSIAASGGILLWPQ----SHFDWVRPGIIL 234 (379)
T ss_dssp TCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHHT---TCC---SC-EECCCHHHHHHCGG----GCSSEECCCGGG
T ss_pred hCCCcEEEEEEEEECCccCCCCcHHHHHHHHHHHHHHh---ccC---CC-eEEEECcchhcCcc----cCCCEECccHHH
Confidence 6 58 99999999999986532 234456666555432 222 23 77777655432111 112345555655
Q ss_pred hCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCcccccccccccccccccccc
Q 015304 260 YFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLAS 333 (409)
Q Consensus 260 ~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~ 333 (409)
|... |.+. +..++ +..+.+|++++|+|+.+|+. |+ +.+|.....+..++.+++|++++++ .+++..
T Consensus 235 yG~~---p~~~--~~~~~-~~~l~pa~~l~a~Vi~vk~~~~G~~v~yg~~~~~~~~~~ia~v~~GyaDG~~r--~l~~~~ 306 (379)
T 2rjg_A 235 YGVS---PLED--RSTGA-DFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPR--AAPSGT 306 (379)
T ss_dssp GTCC---SSSS--SCCGG-GGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCT--TCCTTC
T ss_pred HCCC---cccc--ccccc-ccCCceEEEEEEEEEEEEEcCCCCEEeeCCEEECCCCcEEEEEeeecccCccc--ccCCCc
Confidence 5321 1111 10122 45689999999999999975 33 2344444444556677889998876 344321
Q ss_pred ccccCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCCC
Q 015304 334 SLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEMG 381 (409)
Q Consensus 334 ~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~G 381 (409)
. +. ..+++++|+|++|| |+++.+++ +|++++||.|+|.+.+
T Consensus 307 ~-v~----i~g~~~~ivG~vcm--D~~~vdv~~~~~~~~GD~v~l~g~~ 348 (379)
T 2rjg_A 307 P-VL----VNGREVPIVGRVAM--DMICVDLGPQAQDKAGDPVILWGEG 348 (379)
T ss_dssp E-EE----ETTEEEEBCSCCCS--SCEEEECCTTCCCCTTCEEEEEBTT
T ss_pred E-EE----ECCEEeeEeeeecc--ccEEEECCCCCCCCCCCEEEEECCC
Confidence 1 11 13578999999999 99999985 8889999999999865
No 29
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=100.00 E-value=6.6e-33 Score=271.82 Aligned_cols=314 Identities=15% Similarity=0.138 Sum_probs=243.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcC----CcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCN----PEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan----~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+.++|+++|++|++.+++.++ ++++++++||| ..+.|++.+.+.|+ +|+|++.+|+..++++|++. +|++.|
T Consensus 7 ~~l~Idl~al~~N~~~l~~~~~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~-~ilvlg 85 (374)
T 4ecl_A 7 AYLEINLNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGISS-EILILG 85 (374)
T ss_dssp EEEEECHHHHHHHHHHHHHTSCTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCS-EEEECS
T ss_pred EEEEEcHHHHHHHHHHHHHhcCCCCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCCCC-CEEEEe
Confidence 4678999999999999999875 79999999996 78999999999999 99999999999999999874 566667
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-cC
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-SG 185 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~~ 185 (409)
+. ++++++.++++++. ++|||+++++.|.+..+..+|.|+|+++ .+|||+. +++.++++.+++ ++
T Consensus 86 ~~-~~~~~~~~~~~~i~-~~v~s~~~l~~l~~~~~~~~v~lkvdtG---------m~R~G~~---~e~~~~~~~i~~~~~ 151 (374)
T 4ecl_A 86 YT-SPSRAKELCKYELT-QTLIDYRYSLLLNKQGYDIKAHIKIDTG---------MHRLGFS---TEDKDKILAAFSLKH 151 (374)
T ss_dssp CC-CGGGHHHHHHTTCE-EEECCHHHHHHHHTTCCCEEEEEEEESS---------SCSSSEE---SSCHHHHHHHTTCTT
T ss_pred CC-CHHHHHHHHHCCCE-EEECCHHHHHHHHhcCCCccEEEEEcCC---------CCcCccC---HHHHHHHHHHHhCCC
Confidence 74 67889999999985 8999999999998885567899999863 3899997 457788887765 58
Q ss_pred CeEEEEEEeeCCCCC----CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhC
Q 015304 186 LSVVGVAFHIGSAAT----KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYF 261 (409)
Q Consensus 186 l~l~Glh~H~gs~~~----~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~ 261 (409)
+++.|+|+|++++.. +...+.+|++++.++.+.+++.|+ ++.++++|++.++....+.. .+++|.++..|.
T Consensus 152 l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~~g~-~~~~~~~~nSa~~~~~~~~~----~d~vR~Gi~lyG 226 (374)
T 4ecl_A 152 IKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKSSGL-NIPKVHIQSSYGLLNYPELE----CDYIRVGVALYG 226 (374)
T ss_dssp EEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCCHHHHHHCTTCC----CSEEEESGGGGT
T ss_pred ceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHHcCC-CCCeEEecCCchhhcCcccC----CCEEcccceeeC
Confidence 999999999999865 233456788999998888888888 88999999976654322221 245677777674
Q ss_pred CCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCcccccccccccccccccccccc
Q 015304 262 PNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSL 335 (409)
Q Consensus 262 ~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (409)
.. |.+. ... +-..-..++++|.++|+.+|+. |+ +.+|.....+..++.+++|.|++++ .+++....
T Consensus 227 ~~---p~~~--~~~-~~~~~l~pa~~l~a~Vi~vk~~~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~R--~l~~~~~~ 298 (374)
T 4ecl_A 227 VL---SSTN--DKT-KLELDLRPVLSLKAKVVLIRKIKQGESVGYSRAFTATRDSLIAILPIGYADGFPR--NLSCGNSY 298 (374)
T ss_dssp CC---SSSC--CCC-SSCCCCCCCEEEEEECCEEEEECTTCBSTTCTTCBCSSCEEEEEESCCGGGTCCG--GGTTTSCE
T ss_pred CC---Cccc--ccc-ccccCceEEEEEEEEEEEEEEcCCCCcCCCCCeEECCCCcEEEEEecccccccch--hccCCceE
Confidence 21 1112 100 0122478999999999999973 33 2345454445667778999999887 45543111
Q ss_pred ccCCCCCCceeEEEEccccCCCCccccCCC-CCCCCCCCEEEEcCC
Q 015304 336 TTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPELEVTDWLVFSEM 380 (409)
Q Consensus 336 ~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~~~~~ 380 (409)
+. .++++++|+|++|| |+++.|++ .|++++||.|+|++.
T Consensus 299 v~----i~g~~~pivGrv~M--D~~~vDvt~~~~~~~Gd~v~l~G~ 338 (374)
T 4ecl_A 299 VL----IGGRQAPIVGKICM--DQLAVDVTDIPNVKTGSIATLIGK 338 (374)
T ss_dssp EE----ETTEEEEEESCCCS--SCEEEECTTCSSCCTTCEEEEEEE
T ss_pred EE----ECCEEEEEEChhhh--ceEEEEcCCCCCCCCCCEEEEEeC
Confidence 22 14689999999999 99999984 678999999999874
No 30
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.98 E-value=2.4e-32 Score=267.20 Aligned_cols=309 Identities=14% Similarity=0.133 Sum_probs=236.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCc----CCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKC----NPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKa----n~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+.++|+++|++|++.+++.++ ++++++++|| +..+.|++.+.+.|+ +|+|++.+|+..++++|+++ +|++.|
T Consensus 9 ~~~~Idl~al~~N~~~l~~~~~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~-~Ilvlg 87 (371)
T 3e5p_A 9 TRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQD-PILILS 87 (371)
T ss_dssp CEEEECHHHHHHHHHHHHHSSCSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCS-CEEEEE
T ss_pred eEEEEEHHHHHHHHHHHHHhcCCCCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCCCC-CEEEEc
Confidence 6788999999999999999887 7999999999 568999999999999 99999999999999999975 677777
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHH-HhHCC----CCeEEEEEecCCCCCCCCCCCCCcCCCCCc-ccHHHHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKI-RKWHP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHP-QEIVPLLEA 180 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i-~~~~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~-~~~~~~~~~ 180 (409)
+ .++++++.++++++. ++|||+++++.| .+.++ ..+|.|+|+++ .+|||+. + +++.++++.
T Consensus 88 ~-~~~~~~~~~~~~~i~-~~V~s~~~l~~l~~~~a~~~~~~~~V~lkvdtG---------m~R~G~~--~~ee~~~~~~~ 154 (371)
T 3e5p_A 88 V-VDLAYVPLLIQYDLS-VTVATQEWLEAALQQLTPESNTPLRVHLKVDTG---------MGRIGFL--TPEETKQAVRF 154 (371)
T ss_dssp E-CCGGGHHHHHHHTCE-EEECCHHHHHHHHHHHCSCCSCCBCEEEEBCSS---------SCSSSBC--SSHHHHHHHHH
T ss_pred C-CCHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHHHcCCceEEEEEECCC---------CCcCCCC--CHHHHHHHHHH
Confidence 7 467899999999995 899999999999 88753 46788888763 3899999 8 899999998
Q ss_pred HHH-cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHH
Q 015304 181 AEA-SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALH 258 (409)
Q Consensus 181 ~~~-~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~ 258 (409)
+++ +++++.|+++|+++... +.....+|+++|.++.+.+++ .+.++++++.-++....+.. .+++|.++.
T Consensus 155 i~~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~----~~~~~h~~NSa~~~~~~~~~----~d~vR~Gi~ 226 (371)
T 3e5p_A 155 VQSHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEE----LPRYVHVSNSATALWHPDVP----GNMIRYGVA 226 (371)
T ss_dssp HHHSTTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSC----CCSEEECBCHHHHHHCTTSS----CSEEEECGG
T ss_pred HHhCCCccEEEEEEEcCCCCCCCcHHHHHHHHHHHHHHHHhhh----cCCeEEEecChhHhcCcccC----CCeEeeCce
Confidence 876 58999999999998764 444456777777665432221 24567777654443221222 256788888
Q ss_pred hhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccc
Q 015304 259 AYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLA 332 (409)
Q Consensus 259 ~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~ 332 (409)
.|... |.++. .+-..-..|+++|.++|+.+|+. |+ +.+|.....+..++.+++|+|++++ .+++.
T Consensus 227 lYG~~---p~~~~----~~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R--~ls~~ 297 (371)
T 3e5p_A 227 MYGLN---PSGNK----LAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLR--HLQGF 297 (371)
T ss_dssp GGTCC---TTTTS----SCCSSCCCCCEEEEEECCCEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCG--GGTTC
T ss_pred eECCC---ccccc----cccccCcceEEEEEEEEEEEEEcCCCCeECcCCeeECCCCcEEEEEeecchhchhh--hcCCC
Confidence 77432 22221 00113478999999999999984 43 2456665556777889999999987 34442
Q ss_pred cccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCC
Q 015304 333 SSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMG 381 (409)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~G 381 (409)
. +. .++++++|+|++|| |+++.|+..| +++||.|++++.+
T Consensus 298 ~--v~----i~G~~~pivGrv~M--D~~~vDv~~~-~~~Gd~v~l~G~~ 337 (371)
T 3e5p_A 298 T--VL----VNGKRCEIVGRVCM--DQCMIRLAEE-VPVGPVVTLVGKD 337 (371)
T ss_dssp E--EE----SSSCEEEEESCCCS--SCEEEEESSC-CCSCCEEEEEEEE
T ss_pred e--EE----ECCEEeEEeceecc--cEEEEECCCC-CCCCCEEEEEcCC
Confidence 2 22 15689999999999 9999998554 8999999998743
No 31
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.97 E-value=7.5e-32 Score=263.76 Aligned_cols=309 Identities=14% Similarity=0.171 Sum_probs=230.5
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCC----cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCC-CCCCcE
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNP----EPALLEALAALGS-NFDCASRSEIEAVLALG-VSPDRI 102 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~----~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G-~~~~~I 102 (409)
..+ ++.++|+++|++|++.+++.++++++++++|||+ ...|++.+.+.|+ +|+|++.+|+..++++| ++. +|
T Consensus 18 ~~~-~~~~Idl~al~~N~~~l~~~~~~~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag~~~~-~i 95 (376)
T 3kw3_A 18 PAT-AIATIDVRAIVANYRTLAQHVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENV-MI 95 (376)
T ss_dssp CCS-EEEEECHHHHHHHHHHHHHHHTTSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSC-EE
T ss_pred CCC-eEEEEcHHHHHHHHHHHHHhCCCCEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcCCCCC-CE
Confidence 455 8999999999999999999988899999999985 6899999999999 99999999999999998 764 56
Q ss_pred EEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH----CCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHH
Q 015304 103 IYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKW----HPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLL 178 (409)
Q Consensus 103 i~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~----~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~ 178 (409)
++.++. .+++++.++++++. ++|||+++++.|.+. .+..+|.|+|+++ .+|||+. ++++.+++
T Consensus 96 lvl~~~-~~~~~~~~~~~~i~-~~V~s~~~l~~l~~~a~~~~~~~~V~lkVdtG---------m~R~G~~--~~e~~~l~ 162 (376)
T 3kw3_A 96 ALLNGF-PHKAEEFVAQSGII-PLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTN---------MSRLGLD--KKELQKLI 162 (376)
T ss_dssp EETTCC-CTTCHHHHHHTTCE-EEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS---------CCSSSBC--HHHHHHHH
T ss_pred EEEeCC-CHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHHcCCCeEEEEEECCC---------CCcccCC--HHHHHHHH
Confidence 766664 45678999999995 799999999999764 3567899999863 3899999 89998888
Q ss_pred HHHHH-cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHH
Q 015304 179 EAAEA-SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEA 256 (409)
Q Consensus 179 ~~~~~-~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~ 256 (409)
+.+++ +++++.|+++|+++... +.....+|+++|.++.+.++ +. . +++++.-++.... +.-.+++|.+
T Consensus 163 ~~i~~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~--~~---~-~h~aNSa~~l~~~----~~~~d~vR~G 232 (376)
T 3kw3_A 163 KNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLP--TC---K-VSFANSGGIFLGS----DFYFDLVRPG 232 (376)
T ss_dssp HCCTHHHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSC--CC---C-EECCCHHHHTTCG----GGTTTEECCS
T ss_pred HHHHhCCCCcEEEEEEECCCCCCCCcHHHHHHHHHHHHHHhhcc--CC---C-EEEEeChhhhcCc----cccCCEEecC
Confidence 87754 58999999999998764 33445678888776654321 22 2 5666654443221 1223578888
Q ss_pred HHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccc
Q 015304 257 LHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLT 330 (409)
Q Consensus 257 l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~ 330 (409)
+..|... |.+.. + .-..++++|.++|+.+|+. |+ +.+|.....++.++.+++|.|++++ .++
T Consensus 233 i~lYG~~---p~~~~-----~--~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R--~~s 300 (376)
T 3kw3_A 233 IALYGVD---PHGKH-----P--TPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPR--ILS 300 (376)
T ss_dssp GGGGTCC---TTCCS-----S--CSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCCG--GGT
T ss_pred hhhcCCC---CCccc-----c--cCCcceEEEEEEEEEEEecCCCCeeccCCeEECCCCeEEEEEEecccccchh--hcC
Confidence 8877532 22221 1 2378999999999999984 43 2456565556777889999999987 444
Q ss_pred cccccccCCCCCCceeEEEEccccCCCCccccCCC-CCC-CCCCCEEEEcCCC
Q 015304 331 LASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK-LPE-LEVTDWLVFSEMG 381 (409)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp~-l~~GD~l~~~~~G 381 (409)
+... +. .++++++|+|+.|| |+++.|++ .|+ +++||.|+|++.+
T Consensus 301 ~~~~-v~----i~G~~~pivGrv~M--D~~~vDvt~~~~~~~~Gd~v~l~G~~ 346 (376)
T 3kw3_A 301 NKGT-VY----FNGHKLPIVGHISM--DSIIVDATDLDKKPQRGDWVELIGPH 346 (376)
T ss_dssp TTCE-EE----ETTEEEEBCSCCCS--SCEEEECTTCSSCCCTTCEEEEEBTT
T ss_pred CCce-EE----ECCEEEEEeCeecc--ceEEEEcCCCcccCCCCCEEEEECCC
Confidence 4221 21 15689999999999 99999985 675 9999999998753
No 32
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.97 E-value=1.7e-31 Score=261.80 Aligned_cols=307 Identities=17% Similarity=0.149 Sum_probs=222.5
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcC----CcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCN----PEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan----~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++.++|+++|++|++ +++.++ ++++++++||| ....|++.+.+.|+ +|.|++.+|+..++++|++. +|++.|
T Consensus 9 ~~~~Idl~al~~N~~-l~~~~~~~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi~~-~ilvlg 86 (382)
T 4a3q_A 9 AYMNVDLNAVASNFK-VFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITA-KILVLG 86 (382)
T ss_dssp EEEEEEHHHHHHHHH-HHHHHCTTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCS-EEEECS
T ss_pred EEEEEEHHHHHHHHH-HHhhcCCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCCCC-CEEEEe
Confidence 577899999999999 998775 79999999995 46899999999999 99999999999999999874 566667
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCC-----CCeEEEEEecCCCCCCCCCCCCCcCCCCCccc-HHHHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHP-----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQE-IVPLLEA 180 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~-----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~-~~~~~~~ 180 (409)
+. ++++++.++++++. ++|||+++++.|.+.+. ..+|.|+|+++ .+|+|+. +++ +.++++.
T Consensus 87 ~~-~~~~~~~~~~~~i~-~~V~s~~~l~~l~~~a~~~~~~~~~V~lkvDtG---------m~R~G~~--~~e~~~~~~~~ 153 (382)
T 4a3q_A 87 VL-PAKDIDKAIQHRVA-LTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTG---------MGRLGIK--DTNTYQEVIEI 153 (382)
T ss_dssp CC-CGGGHHHHHHTTCB-EEECCHHHHHHHHHTCCTTCCSCEEEEEEBCSS---------SSSSSBC--CHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCCceeEEEEECCC---------CCcCCCC--hHHHHHHHHHH
Confidence 74 67889999999996 79999999999998754 35677777652 3899999 876 8899988
Q ss_pred HHH-cCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHH
Q 015304 181 AEA-SGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALH 258 (409)
Q Consensus 181 ~~~-~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~ 258 (409)
+++ +++++.|+++|+++... +.. ...|+++|.++.+. + . .+.++++++.-++...++.. .+++|.++.
T Consensus 154 i~~~~~l~l~Gl~tH~a~ad~~~~~-~~~Q~~~F~~~~~~---l-~-~~~~~h~aNSa~~l~~~~~~----~d~vR~Gi~ 223 (382)
T 4a3q_A 154 IQQYEQLVFEGVFTHFACADEPGDM-TTEQYQRFKDMVNE---A-I-KPEYIHCQNSAGSLLMDCQF----CNAIRPGIS 223 (382)
T ss_dssp HHHCTTEEEEEEECCC-------CH-HHHHHHHHHHHHTT---S-C-CCSEEECCCHHHHHHCCCTT----CSEECCCGG
T ss_pred HHhCCCceEEEEEEECcCCCCCCch-HHHHHHHHHHHHHh---h-C-CCCcEEEEcChhhhcCcccC----CCeEeecce
Confidence 866 58999999999998753 333 66788887766543 2 3 56677877754443221211 256777887
Q ss_pred hhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccc
Q 015304 259 AYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLA 332 (409)
Q Consensus 259 ~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~ 332 (409)
.|... |....-. .-..-..|+++|.++|+.+|+. |+ +.+|.....+..++.+++|+|++++ .+++
T Consensus 224 lYG~~-----p~~~~~~-~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R--~~s~- 294 (382)
T 4a3q_A 224 LYGYY-----PSEYVQQ-KVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLR--IMQG- 294 (382)
T ss_dssp GGTCC-----SSHHHHH-HCSSCCCCCEEEEEECCEEEC------------------CEEEEESCCGGGTCCG--GGTT-
T ss_pred eECCC-----ccccccc-ccccCCceeEEEEEEEEEEEEcCCCCEEcCCCeEECCCCeEEEEEeeccccccch--hcCC-
Confidence 77422 2110100 0112478999999999999974 43 3456666556778889999999987 3444
Q ss_pred cccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCC
Q 015304 333 SSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMG 381 (409)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~G 381 (409)
.. +. .++++++|+|++|| |+++.|++- ++++||.|++++..
T Consensus 295 ~~-v~----i~G~~~pivGrv~M--D~~~vDvt~-~~~~Gd~V~l~G~~ 335 (382)
T 4a3q_A 295 SF-VN----VNGHQCEVIGRVCM--DQTIVKVPD-QVKAGDSVILIDNH 335 (382)
T ss_dssp CE-EE----ETTEEEEBCSCCCS--SCEEEEECT-TCCTTCEEEEECSC
T ss_pred CE-EE----ECCEEEEEeeeeec--cEEEEECCC-CCCCCCEEEEEeCC
Confidence 21 22 15789999999999 999999865 78999999998753
No 33
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.97 E-value=5e-31 Score=257.52 Aligned_cols=308 Identities=13% Similarity=0.128 Sum_probs=233.2
Q ss_pred cEEEEeHHHHHHHHHHHHHhCC-CcceEEecCcC----CcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLP-MIHPHYAVKCN----PEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~-~~~i~yavKan----~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+.++|+++|++|++.+++.++ ++++++++||| ....|++.+.+. + +|.|++.+|+..++++|++. +|++.|
T Consensus 9 ~~~~Idl~al~~N~~~l~~~~~~~~~l~aVvKanaYGhg~~~va~~l~~~-~~~f~va~~~Ea~~lr~~G~~~-~ilvlg 86 (367)
T 3mub_A 9 TKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKANAYGHGAVAVAKAIQDD-VDGFCVSNIDEAIELRQAGLSK-PILILG 86 (367)
T ss_dssp CEEEECHHHHHHHHHHHHHTSCTTCEEEEECHHHHHTTCHHHHHHHHGGG-CSEEEESSHHHHHHHHHTTCCS-CEEEEE
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCCCEEEEEECcccccCCHHHHHHHHHHh-CCeEEEeEHHHHHHHHHcCCCC-CEEEEc
Confidence 6788999999999999999887 79999999995 578999999888 7 99999999999999999975 566667
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC---CCCeEEEEEecCCCCCCCCCCCCCcCCCCCc-ccHHHHHHHHH
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH---PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHP-QEIVPLLEAAE 182 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~---~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~-~~~~~~~~~~~ 182 (409)
+. ++++++.++++++. ++|||+++++.|.+.+ +..++.|+|+++ .+|+|+. + +++.++++.++
T Consensus 87 ~~-~~~~~~~~~~~~l~-~~V~s~~~l~~l~~~a~~~~~~~V~lkvdtG---------m~R~G~~--~~ee~~~~~~~i~ 153 (367)
T 3mub_A 87 VS-EIEAVALAKEYDFT-LTVAGLEWIQALLDKEVDLTGLTVHLKIDSG---------MGRIGFR--EASEVEQAQDLLQ 153 (367)
T ss_dssp EC-CGGGHHHHHHTTEE-EEECCHHHHHHHHHTTCCCTTCEEEEEECSS---------CCSSSBC--SHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHhcCCeeEEEEECCC---------CCcCCCC--cHHHHHHHHHHHc
Confidence 63 66889999999985 7999999999998876 346889999863 3899999 8 89999998875
Q ss_pred HcCCeEEEEEEeeCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHHhhC
Q 015304 183 ASGLSVVGVAFHIGSAAT-KFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYF 261 (409)
Q Consensus 183 ~~~l~l~Glh~H~gs~~~-~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~~~~ 261 (409)
++++++.|+++|+++... +.....+|+++|.++.+.+++ .+.++++++.-++...++ .-.+++|.++..|.
T Consensus 154 ~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~----~~~~~h~~NSa~~l~~~~----~~~d~vR~Gi~lYG 225 (367)
T 3mub_A 154 QHGVCVEGIFTHFATADEESDDYFNAQLERFKTILASMKE----VPELVHASNSATTLWHVE----TIFNAVRMGDAMYG 225 (367)
T ss_dssp HTTCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHHHTCSS----CCSEEEEECHHHHHHCGG----GCCSEEEECTTTTT
T ss_pred cCCcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHHhhh----cCCeEEEecChHHhcCcc----cCCCeEEhhhHhhC
Confidence 588999999999998764 434456788887776553322 245677776544321111 12256777777664
Q ss_pred CCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCcccccccccccccccccccccc
Q 015304 262 PNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSL 335 (409)
Q Consensus 262 ~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (409)
.. |.++. . +-..-..|+++|.++|+.+|+. |+ +.+|.....+..++.+++|+|++++ .+++..
T Consensus 226 ~~---p~~~~--~--~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R--~ls~~~-- 294 (367)
T 3mub_A 226 LN---PSGAV--L--DLPYDLIPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTR--DMQNFS-- 294 (367)
T ss_dssp CC---TTTTS--S--CCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECSSCEEEEEESCCGGGTCCG--GGTTCE--
T ss_pred CC---Ccccc--c--ccccCcceEEEEEEEEEEEEEcCCCCeeCCCCeEECCCCeEEEEEeecchhchhh--hcCCCe--
Confidence 22 22221 0 0112478999999999999984 43 2456655556677889999999987 344422
Q ss_pred ccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCC
Q 015304 336 TTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMG 381 (409)
Q Consensus 336 ~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~G 381 (409)
+. .++++++|+|++|| |+++.|+..| +++||.|++++.+
T Consensus 295 v~----i~G~~~pivGrv~M--D~~~vDv~~~-~~~Gd~v~l~G~~ 333 (367)
T 3mub_A 295 VL----VDGQACPIVGRVSM--DQITIRLPKL-YPLGTKVTLIGSN 333 (367)
T ss_dssp EE----ETTEEEEBCSCCCS--SCEEEEESSC-CCTTCEEEEEEEE
T ss_pred EE----ECCEEeEEeChhcc--cEEEEECCCC-CCCCCEEEEEeCC
Confidence 22 15689999999999 9999998544 8999999998754
No 34
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.97 E-value=1.1e-30 Score=257.48 Aligned_cols=254 Identities=15% Similarity=0.144 Sum_probs=197.2
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
.+++| |+++||+++|++|++++++.++ +++++|++|||+++.|++.+.+.|+ +|+|+|..|++.++++|++ +|+
T Consensus 8 ~~~~t-P~~~idl~~l~~N~~~l~~~~~~~~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~--~ii 84 (376)
T 3anu_A 8 DTLPT-PALTIDRTTARRNAERMRERCRALGVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFD--DIL 84 (376)
T ss_dssp GGSCS-SEEEEEHHHHHHHHHHHHHHHHHHTCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCE--EEE
T ss_pred ccCCC-ceEEEeHHHHHHHHHHHHHHHHHcCCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCC--eEE
Confidence 46789 9999999999999999999886 8999999999999999999999998 9999999999999999996 555
Q ss_pred EeCCCCCHHHHHHHHH-----cCCcEEEecCHHHHHHHHhHCC----CCeEEEEEecCCCCCCCCCCCCCcCCCCCccc-
Q 015304 104 YANPCKPVSHIKYAAN-----VGVNLTTFDSVEELHKIRKWHP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQE- 173 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~-----~gv~~~~vds~~el~~i~~~~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~- 173 (409)
+..+.+ +++++.+++ .++. ++|||+++++.|.+.++ ..+|.|+|+++ .+|||++ +++
T Consensus 85 ~~~~~~-~~~l~~~~~l~~~~~~i~-~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~g---------~~R~G~~--~~~~ 151 (376)
T 3anu_A 85 LAYPVP-TARLEECAGLARRLDAFH-VLLDRPEALASLRQRPLGHGKRWLVWLKLDCG---------NGRAGVR--PTDP 151 (376)
T ss_dssp EEEECC-GGGHHHHHHHHHHSSCEE-EEECCHHHHHHHHTSCCCTTCCEEEEEEECCC-----------CSSBC--TTSH
T ss_pred EECCCc-HHHHHHHHHHHhcCCcEE-EEeCCHHHHHHHHHHHHhCCCceEEEEEECCC---------CCcCCCC--CCch
Confidence 544446 788999988 7884 89999999999998753 35788888863 3899999 887
Q ss_pred -HHHHHHHHHHc---CCeEEEEEEeeCC-CC-CCHH---HHH-HHHHHHHHHHHHHHHcCCCCCcEEeecCCCC-cCCCC
Q 015304 174 -IVPLLEAAEAS---GLSVVGVAFHIGS-AA-TKFA---AYR-GAIAAAKAVFETAARLGNNKMRVLDIGGGFS-FTNSN 242 (409)
Q Consensus 174 -~~~~~~~~~~~---~l~l~Glh~H~gs-~~-~~~~---~~~-~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~-~~~~~ 242 (409)
+.++++.++++ ++++.|||+|.|+ +. .+.. .+. ++++.+.++.+.+++.|+ ++.++|+|||.+ +.+..
T Consensus 152 ~~~~l~~~i~~~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~vs~Ggs~~~~~~~~ 230 (376)
T 3anu_A 152 AALELAQAIANDAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQAGV-PCPQASIGSTPSCSHPIP 230 (376)
T ss_dssp HHHHHHHHHHHSCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCEEEECCHHHHHSCCG
T ss_pred hHHHHHHHHhCCCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEccCHHHhhhhh
Confidence 88998887557 8999999999987 32 2332 343 478888888888888898 889999999988 75432
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC-ceeeeccEEEEEEEEEEEEeCCeeEEEEeCCcC
Q 015304 243 TKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPG-RFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKY 311 (409)
Q Consensus 243 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG-R~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~~ 311 (409)
+. ...+.++.++..|+.. +. .++| |+.+.+|++++|+|+++|... ...+++.|++
T Consensus 231 ~~---~~~~~vr~G~~l~~~~-----~~----~~~~~~~~~~~a~~l~a~Vi~vk~~~--g~~v~dgG~~ 286 (376)
T 3anu_A 231 EM---SQLTELHPGNYIFYDL-----QQ----TQLGSCQPQDVAIRVLTRVIGHYAHR--GQLLVDCGWA 286 (376)
T ss_dssp GG---GGSSEECCCGGGTCCH-----HH----HHHTSSCGGGCCEEEEEEEEEEETTT--TEEEESCCHH
T ss_pred hc---CCceEeccceEEEecc-----cc----ccccCCCcCceEEEEEEEEEeeeCCC--CeEEEeCCCc
Confidence 20 1123445555444321 11 2456 678899999999999998632 2456665554
No 35
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.96 E-value=4.9e-30 Score=251.84 Aligned_cols=311 Identities=11% Similarity=0.082 Sum_probs=231.7
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCC----cHHHHHHHHHc-CC-cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNP----EPALLEALAAL-GS-NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~----~~~vl~~l~~~-G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++.++|+++|++|++.+++.-+++++++++|||+ ...|++.+.+. |+ +|.|++.+|+..++++|++. +|++.|
T Consensus 10 ~~l~Idl~al~~N~~~l~~~~~~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aGi~~-~Ilvlg 88 (395)
T 3hur_A 10 TWVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTL-PIWVLG 88 (395)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCS-CEEESS
T ss_pred eEEEEeHHHHHHHHHHHHhcCCCCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcCCCC-CEEEEc
Confidence 5788999999999999998745799999999974 68999999999 99 99999999999999999874 677778
Q ss_pred CCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH-CCCCeEEEEEecCCCCCCCCCCCCCcCCCCCccc-HHHHHHHHHH-
Q 015304 107 PCKPVSHIKYAANVGVNLTTFDSVEELHKIRKW-HPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQE-IVPLLEAAEA- 183 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~-~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~-~~~~~~~~~~- 183 (409)
+. .+++++.++++++. .+|+|+++++.|.+. . ..+|.|+|+++ .+|+|+. +++ +.++++.+.+
T Consensus 89 ~~-~~~~~~~~~~~~l~-~~V~s~~~l~~l~~~~~-~~~V~lkvDtG---------m~R~G~~--~~e~~~~~~~~i~~~ 154 (395)
T 3hur_A 89 AW-DYSDLKLFIDHDIV-ITIPSLAWLQNLPDFEG-TLKVSLAIDTG---------MTRIGFD--KADEISAAKKIIDKN 154 (395)
T ss_dssp CC-CGGGHHHHHHTTEE-EEECCHHHHHTCCCCSS-CEEEEEEBCCS---------SCSSSBC--CHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHcCCE-EEECCHHHHHHHHHhcC-CCcEEEEEcCC---------CCCcCCC--hHHHHHHHHHHHHhC
Confidence 74 67889999999885 799999999988765 2 45667777642 3899999 876 8888888866
Q ss_pred cCCeEEEEEEeeCCCCC-CHH---HHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCC-CCHHHHHHHHHHHHH
Q 015304 184 SGLSVVGVAFHIGSAAT-KFA---AYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNT-KSFQEAASIIKEALH 258 (409)
Q Consensus 184 ~~l~l~Glh~H~gs~~~-~~~---~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~-~~~~~~~~~i~~~l~ 258 (409)
+++++.|+++|+++... +.. ...+|+++|.++.+. +.. .+.++++++.-++...++ .. ...+++|.++.
T Consensus 155 ~~l~l~Gl~TH~a~ad~~~~~~~~~~~~Q~~~F~~~~~~---l~~-~~~~~h~aNSa~~l~~~~~~~--~~~d~vR~Gi~ 228 (395)
T 3hur_A 155 PQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTIN---QGF-DPSLFSMANSATCIWHHDDPR--ISFAAIRPGQL 228 (395)
T ss_dssp TTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTT---SCC-CGGGEECCCHHHHHHTTTCTT--SCCSEECCCGG
T ss_pred CCceEEEEEEeCcCCCCCCCcchHHHHHHHHHHHHHHHh---ccC-CCCeEEEcCCHHHhcCccccc--ccCceEecChh
Confidence 58999999999998764 443 456788887776543 223 556678777544332212 11 00256888888
Q ss_pred hhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEe--CC----eeEEEEeCCcCCCccccccccccccccccccc
Q 015304 259 AYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVH--GE----MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLA 332 (409)
Q Consensus 259 ~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~--g~----~~~~~i~~g~~~~~~~~~~~~~~~~~~~l~~~ 332 (409)
.|... |.+... .++-.....|+++|.++|+.+|+. |+ +.+|.....+..++.+++|+|++++ .+++
T Consensus 229 LYG~~---p~~~~~--~~~~~~~l~pv~~l~a~Ii~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R--~ls~- 300 (395)
T 3hur_A 229 ISGVN---VSNGEL--KMPPNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLR--RMQK- 300 (395)
T ss_dssp GGTCC---TTTTSS--CCCTTCCCCCCEEEEEECCEEEEECTTCBSSTTCSCBCSSSEEEEEESCCTTCGGGG--GEEE-
T ss_pred hcCCC---CCcccc--ccccccccceeEEEEEEEEEEEEeCCCCeEcCCCeEECCCCcEEEEEEeccccccch--hcCC-
Confidence 77532 222210 011111278999999999999984 33 2445555556667788999999987 3444
Q ss_pred cccccCCCCCCceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCC
Q 015304 333 SSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEM 380 (409)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~ 380 (409)
.. +. .++++++|+|++|| |+++.|++- ++++||.|++++.
T Consensus 301 ~~-v~----i~G~~~pivGrv~M--D~~~vDvt~-~~~~GD~V~l~G~ 340 (395)
T 3hur_A 301 SS-VI----INGKRMPIIGRITM--DQTMVKLDR-KYPIGTRVTLIGK 340 (395)
T ss_dssp EE-EE----ETTEEEEBCSCCCS--SCEEEECSS-CCCTTCEEEEEES
T ss_pred Ce-EE----ECCEEEEEECceec--cEEEEECCC-CCCCCCEEEEEcC
Confidence 21 22 15689999999999 999999865 7899999999875
No 36
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.93 E-value=5.1e-25 Score=216.68 Aligned_cols=251 Identities=15% Similarity=0.183 Sum_probs=184.4
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
.+++| |+++||+++|++|++.+++.++ ++++++++|+|.++.|++.+.+.|+ +|.|++..|++.++++|++ +.|+
T Consensus 10 ~~~~t-P~~~idl~al~~N~~~l~~~~~~~~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~Gi~-~~il 87 (376)
T 3llx_A 10 AHPDT-PYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYT-DLLY 87 (376)
T ss_dssp GSSCS-SEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCC-EEEE
T ss_pred hhCCC-cEEEEcHHHHHHHHHHHHHHHHhCCCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhCCCC-cEEE
Confidence 57899 9999999999999999999885 7999999999999999999999998 9999999999999999986 3444
Q ss_pred EeCCCCCHHHHHHHH-----HcCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCccc-
Q 015304 104 YANPCKPVSHIKYAA-----NVGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQE- 173 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~-----~~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~- 173 (409)
..+. . +++++.++ +.++ .++|||.++++.|.+.+ +..+|.|+|+++ .+|+|+. +++
T Consensus 88 ~~~~-~-~~~~~~~~~l~~~~~~l-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~vdtG---------~~R~G~~--~~~~ 153 (376)
T 3llx_A 88 AVGI-A-PAKLKRVAALRQQGINL-HILLDNITQAQAVVDYAAEFGQDFSVFIEIDSD---------DHRGGIK--PSDS 153 (376)
T ss_dssp EEEC-C-GGGHHHHHHHHHTTCEE-EEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS---------SSSSCBC--TTCT
T ss_pred eCCC-C-HHHHHHHHHhhccCCeE-EEEECCHHHHHHHHHHHHhcCCceEEEEEECCC---------CCCCCCC--CchH
Confidence 4444 4 67888887 3455 37899999999998753 467899999863 3899999 776
Q ss_pred -HHHHHHHHHHcCCeEEEEEEeeCCCCC-C-H----HHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCH
Q 015304 174 -IVPLLEAAEASGLSVVGVAFHIGSAAT-K-F----AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSF 246 (409)
Q Consensus 174 -~~~~~~~~~~~~l~l~Glh~H~gs~~~-~-~----~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~ 246 (409)
+.++++.+ ++++.||++|+|+... + + ..+.++++.+.++.+.+++.|+ ++.++++||+.++.+..+..
T Consensus 154 ~l~~~~~~l---~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~-~~~~vs~g~S~~~~~~~~~~- 228 (376)
T 3llx_A 154 KLLTIAKTL---GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGI-HCAITSVGSTPTAHFGEDFS- 228 (376)
T ss_dssp HHHHHHHHH---GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCEEEECCHHHHHHCSCCT-
T ss_pred HHHHHHHHh---CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEcCChhhhhhhhcC-
Confidence 66666655 8999999999998753 2 2 2346778888888888888888 88999999985543221110
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCceeeeccEEEEEEEEEEEEeCCeeEEEEeCCc
Q 015304 247 QEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGK 310 (409)
Q Consensus 247 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~lv~~ag~l~t~V~~~k~~g~~~~~~i~~g~ 310 (409)
..+++|.+..-|... |.... .+. ....+|+++.++|++++...+ ..+++.|.
T Consensus 229 --~~~~vR~G~~lyg~~-----~~~~~--~~~-~~~~pa~~l~a~Vis~~~~~g--~~i~d~G~ 280 (376)
T 3llx_A 229 --DISEVRAGVYTTFDL-----VMKNI--GVC-DFSHIAMSVVTTVIGHNKEKN--WLLTDSGW 280 (376)
T ss_dssp --TCSEECCCGGGTCCH-----HHHHH--TSC-CGGGCCEEEEEEEEEEETTTT--EEEESCCH
T ss_pred --CccEeccceEEeccH-----hHhhc--CCC-CcCCeeEEEEEEEEeeeCCCC--eEEEccCc
Confidence 012233333333211 00000 000 124579999999999996311 46667663
No 37
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.92 E-value=3e-23 Score=206.71 Aligned_cols=194 Identities=20% Similarity=0.220 Sum_probs=164.3
Q ss_pred CCCCCccEEEEeHHHHHHHHHHHHHhCC--CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE
Q 015304 27 QEFDEVPFYILDLGVVVTLYNQMISKLP--MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 27 ~~~~t~P~~v~d~~~l~~n~~~~~~~~~--~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii 103 (409)
.+++| |+++||+++|++|++++++.++ +++++|++|||.++.|++.+.+.|+ +|+|+|..|++.++++|+ ++|+
T Consensus 42 ~~~~t-P~~viDl~al~~N~~~l~~~~~~~gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi--~~il 118 (426)
T 3gwq_A 42 EDVSL-PAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGV--SRVL 118 (426)
T ss_dssp TCBCS-SEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTC--CEEE
T ss_pred ccCCC-CeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCC--CeEE
Confidence 57899 9999999999999999999884 7899999999999999999999998 999999999999999998 5899
Q ss_pred EeCCCCCHHHHHHHHHc----CCc-EEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCc-cc
Q 015304 104 YANPCKPVSHIKYAANV----GVN-LTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHP-QE 173 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~~----gv~-~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~-~~ 173 (409)
+.++...+++++.+.+. ++. .++|||+++++.|.+.+ +..+|.|+||++ .+|+|+. + ++
T Consensus 119 l~~~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~l~VdtG---------~~R~Gv~--~~~e 187 (426)
T 3gwq_A 119 MANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP---------GGRTGVR--DAAQ 187 (426)
T ss_dssp ECSCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT---------TSSSSBC--SHHH
T ss_pred EECCcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCCeeEEEEEeCCC---------CCcCCCC--CHHH
Confidence 99888778888876542 343 36899999999998764 457899999863 3899997 6 88
Q ss_pred HHHHHHHHHH-c-CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--CCcEEeecCC
Q 015304 174 IVPLLEAAEA-S-GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNN--KMRVLDIGGG 235 (409)
Q Consensus 174 ~~~~~~~~~~-~-~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~--~~~~ldiGGG 235 (409)
+.++++.+.+ + ++++.|||+|.|+.. +.+.+..+++++.++++.+++.|+. .+.++++||.
T Consensus 188 ~~~l~~~i~~~~~~l~l~Gl~th~g~~~-~~~~~~~~~~~l~~l~~~L~~~g~~~~~~~~lS~G~S 252 (426)
T 3gwq_A 188 RNAVLEAITRYPDTLKLAGVELYEGVLK-EEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGS 252 (426)
T ss_dssp HHHHHHHHHTSTTTEEEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCS
T ss_pred HHHHHHHHHcCCCCEEEEeEEEEccccC-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCC
Confidence 9999998876 5 899999999999864 5666777888888888877766531 5789998886
No 38
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=99.84 E-value=8e-20 Score=172.50 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=147.5
Q ss_pred EEEeHHHHHHHHHHHHHhCC----CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhC--------------
Q 015304 35 YILDLGVVVTLYNQMISKLP----MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLAL-------------- 95 (409)
Q Consensus 35 ~v~d~~~l~~n~~~~~~~~~----~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~-------------- 95 (409)
+.+|+++|++|++.+++..+ +++++|++|+++...|++. .+.|+ +|+|++.+|+..++++
T Consensus 25 l~idl~ai~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~-~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~ 103 (282)
T 3cpg_A 25 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAA-IDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGV 103 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHH-HHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCCHHHHHHH-HHCCCCEEEEEeHHHHHHHHHhhhhhcccccccccc
Confidence 34789999999999998873 6899999999999999998 68998 9999999999999988
Q ss_pred -CCC----CCcEEE--eCCCCCHHHHHHHHH-cCCcEEEecCHHHHHHHHhH----CCCCeEEEEEecCCCCCCCCCCCC
Q 015304 96 -GVS----PDRIIY--ANPCKPVSHIKYAAN-VGVNLTTFDSVEELHKIRKW----HPKCDLLIRIKPPDDSGAKHPLDS 163 (409)
Q Consensus 96 -G~~----~~~Ii~--~gp~k~~~~i~~a~~-~gv~~~~vds~~el~~i~~~----~~~~~v~lRv~~~~~~~~~~~~~s 163 (409)
|++ +..|.+ .|+.++ ++++.+++ .++ .++|||+++++.|.+. .+..+|.||||++.+ .+
T Consensus 104 ~G~~~d~~~~~i~~~~iG~~~~-~~~~~~~~~~~l-~~~Vds~~~l~~L~~~a~~~~~~~~V~lkVdtGme-------~~ 174 (282)
T 3cpg_A 104 AGAAPDAAAEHIPFHLIGQLQS-NKIGKVLPVVDT-IESVDSIDLAEKISRRAVARGITVGVLLEVNESGE-------ES 174 (282)
T ss_dssp C------CCEEECEEECSCCCG-GGHHHHTTTCSE-EEEECCHHHHHHHHHHHHHHTCCEEEEEEBCCSSC-------TT
T ss_pred ccccccccccceeeeecChhHH-HHHHHHHHhCCE-EEEeCCHHHHHHHHHHHHhcCCCceEEEEEECCCC-------CC
Confidence 773 335554 477544 56888887 777 4799999999999865 345789999997421 28
Q ss_pred CcCCCCCcccHHHHHHHHHH-cCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCcEEeecCC
Q 015304 164 KYGVDHHPQEIVPLLEAAEA-SGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARL-GNN--KMRVLDIGGG 235 (409)
Q Consensus 164 rfGi~~~~~~~~~~~~~~~~-~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~-g~~--~~~~ldiGGG 235 (409)
|||++ ++++.++++.+.+ +++++.|||+|++++. +.+.+..+.+++.++.+.+++. |++ .+..+++|+.
T Consensus 175 R~G~~--~ee~~~l~~~i~~~~~l~l~Gl~th~~~~~-~~~~~~~~~~~l~~~~~~l~~~~g~~~~~~~~lS~g~S 247 (282)
T 3cpg_A 175 KSGCD--PAHAIRIAQKIGTLDGIELQGLMTIGAHVH-DETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMT 247 (282)
T ss_dssp SSSBC--GGGHHHHHHHHHTCTTEEEEEEECCCCCSS-CHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCCT
T ss_pred CCCcC--HHHHHHHHHHHHhCCCceEEeEEEECCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCEEEecCc
Confidence 99999 9999999998876 5899999999999876 5555555667777777666654 641 4667887764
No 39
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=99.64 E-value=7.3e-15 Score=135.03 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=131.4
Q ss_pred CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCC----CCcEEEeCCCCCHHHHHHHHH-cCCcEEEec
Q 015304 55 MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVS----PDRIIYANPCKPVSHIKYAAN-VGVNLTTFD 128 (409)
Q Consensus 55 ~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~----~~~Ii~~gp~k~~~~i~~a~~-~gv~~~~vd 128 (409)
++++..++|+.+.. .++.+.+.|+ .|.++...|+...++.+.. +-...+.|+.. .+.++.++. .++ +.+||
T Consensus 29 ~v~l~AV~Kahg~~-~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~iG~lq-~nk~~~~~~~~~~-i~sVd 105 (245)
T 3sy1_A 29 EITLVAVSKTKPAS-AIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQ-SNKSRLVAEHFDW-CITID 105 (245)
T ss_dssp GCEEEEECTTCCHH-HHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEECSCCC-GGGHHHHHHHCSE-EEEEC
T ss_pred CcEEEEEECCCCHH-HHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeecCCCC-hHHHHHHHHHCCE-EEecC
Confidence 58999999998854 4678889999 9999999999988776542 22346778864 466777764 666 36999
Q ss_pred CHHHHHHHHhHCC----CCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-cCCeEEEEEEeeCCCCCCHH
Q 015304 129 SVEELHKIRKWHP----KCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-SGLSVVGVAFHIGSAATKFA 203 (409)
Q Consensus 129 s~~el~~i~~~~~----~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~~l~l~Glh~H~gs~~~~~~ 203 (409)
|+++++.|.+.++ ..+|.|+||++.+ .+|||++ ++++.++++.+.. ++|++.||++|.+. ..+++
T Consensus 106 s~~~a~~l~~~a~~~~~~~~V~lqVntG~e-------~~R~G~~--~ee~~~l~~~i~~~~~l~l~Glmt~~~~-~~d~~ 175 (245)
T 3sy1_A 106 RLRIATRLNDQRPAELPPLNVLIQINISDE-------NSKSGIQ--LAELDELAAAVAELPRLRLRGLSAIPAP-ESEYV 175 (245)
T ss_dssp CHHHHHHHHHHSCTTSCCEEEEEEBCCSCT-------TCCSSBC--GGGHHHHHHHHTTCTTEEEEEEECCCCC-CSCHH
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEEECCCC-------cCCcCCC--HHHHHHHHHHHHcCCCCeEEEEEEeCCC-CCCHH
Confidence 9999999998764 4588999987421 3899999 9999999998866 58999999988754 45777
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcEEeecCC
Q 015304 204 AYRGAIAAAKAVFETAARLGNNKMRVLDIGGG 235 (409)
Q Consensus 204 ~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG 235 (409)
.+....+++.++.+.+++.+. .+..|++|+.
T Consensus 176 ~~~~~f~~l~~l~~~l~~~~~-~~~~LSmGmS 206 (245)
T 3sy1_A 176 RQFEVARQMAVAFAGLKTRYP-HIDTLALGQS 206 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTTST-TCCEEECCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCEEeccCc
Confidence 777788888888887777665 7889997775
No 40
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=99.55 E-value=6.7e-14 Score=129.67 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=128.9
Q ss_pred eHHHHHHHHHHHHHhC-----C-CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEEEe--CCC
Q 015304 38 DLGVVVTLYNQMISKL-----P-MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRIIYA--NPC 108 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~-----~-~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii~~--gp~ 108 (409)
|++.|++|++++.+.. | +++++.++|+++...|. .+.++|+ +|.|++..|+...+++ ++. .|.+. |+.
T Consensus 17 nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~-~~~~aG~~~fgva~vqEa~~~r~~-~~~-~l~~h~iG~l 93 (256)
T 1ct5_A 17 QYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQ-ILYDHGVREFGENYVQELIEKAKL-LPD-DIKWHFIGGL 93 (256)
T ss_dssp HHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHH-HHHHHTCCEEEECCHHHHHHHHHH-SCT-TCEEEECSCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHH-HHHHcCCCEEEEEcHHHHHHHHHh-ccc-CeeEeecCCC
Confidence 4668888888887766 4 58999999999987776 5888999 9999999999999887 654 47776 764
Q ss_pred CCHHHHHHH--H-HcCCcEEEecCHHHHHHHHhHC----C---CCeEEEEEecCCCCCCCCCCCCCcCCCCCc-ccHHHH
Q 015304 109 KPVSHIKYA--A-NVGVNLTTFDSVEELHKIRKWH----P---KCDLLIRIKPPDDSGAKHPLDSKYGVDHHP-QEIVPL 177 (409)
Q Consensus 109 k~~~~i~~a--~-~~gv~~~~vds~~el~~i~~~~----~---~~~v~lRv~~~~~~~~~~~~~srfGi~~~~-~~~~~~ 177 (409)
..+.++.+ + ..++ ..+|||++.++.|.+.+ + ..+|+|.||++.+ .+|+|+. + +++.++
T Consensus 94 -q~nk~~~~~~~~~~~l-~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e-------~~R~G~~--~~~e~~~l 162 (256)
T 1ct5_A 94 -QTNKCKDLAKVPNLYS-VETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHE-------DQKSGLN--NEAEIFEV 162 (256)
T ss_dssp -CGGGHHHHHHCTTEEE-EEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSS-------CCSSSBC--CHHHHHHH
T ss_pred -CHHHHHHHhcccccCE-EEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEECCCC-------CCCcCcC--chHHHHHH
Confidence 34557776 4 4555 37999999999997753 3 4688898886311 2899999 8 899999
Q ss_pred HHHHH--H-cCCeEEEEEEee--CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeec
Q 015304 178 LEAAE--A-SGLSVVGVAFHI--GSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIG 233 (409)
Q Consensus 178 ~~~~~--~-~~l~l~Glh~H~--gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiG 233 (409)
++.+. . ++|++.||++|+ +... +++....+.+++.++.+.+++ +++++..++.|
T Consensus 163 ~~~i~~~~~~~L~l~Glmth~~~~~ad-~~~~~~~~f~~~~~~~~~l~~-~~~~~~~lS~G 221 (256)
T 1ct5_A 163 IDFFLSEECKYIKLNGLMTIGSWNVSH-EDSKENRDFATLVEWKKKIDA-KFGTSLKLSMG 221 (256)
T ss_dssp HHHHHSTTCCSEEEEEEECCCCCC----------HHHHHHHHHHHHHHH-HHCCCCEEECC
T ss_pred HHHHHHccCCCeeEEEEEEECCcCCCC-CHHHHHHHHHHHHHHHHHHHh-cCCCCCEEEec
Confidence 99887 6 589999999999 5543 333334566666666666655 33134556443
No 41
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=99.43 E-value=4.9e-12 Score=115.77 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHhC---C-CcceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCC---CCcEEEeCCCCC
Q 015304 39 LGVVVTLYNQMISKL---P-MIHPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVLALGVS---PDRIIYANPCKP 110 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~---~-~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~---~~~Ii~~gp~k~ 110 (409)
+..|++++++..+.. | ++++..++|+.+... ++.+.+.|+ .|.++...|+...++.+.. +-...+.|+..
T Consensus 10 l~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~~-i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG~lq- 87 (244)
T 3r79_A 10 LEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEA-IQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIGPLQ- 87 (244)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHHH-HHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECSCCC-
T ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHHH-HHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecCCCC-
Confidence 344555555444433 2 588999999988755 478889999 9999999999988877542 22336778854
Q ss_pred HHHHHHHHH-cCCcEEEecCHHHHHHHHhHC----CCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHH-c
Q 015304 111 VSHIKYAAN-VGVNLTTFDSVEELHKIRKWH----PKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEA-S 184 (409)
Q Consensus 111 ~~~i~~a~~-~gv~~~~vds~~el~~i~~~~----~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~ 184 (409)
.+.++.+++ .++ +.+|||++.++.|.+.+ +..+|+|+||++.+ .+|+|+. ++++.++++.+.. +
T Consensus 88 ~nk~~~~v~~~~~-i~sVds~~~a~~L~~~a~~~g~~~~V~LqVdtG~e-------~~R~Gv~--~ee~~~l~~~i~~l~ 157 (244)
T 3r79_A 88 SNKAADAVALFDV-VESIDREKIARALSEECARQGRSLRFYVQVNTGLE-------PQKAGID--PRETVAFVAFCRDEL 157 (244)
T ss_dssp GGGHHHHHHHCSE-EEEECSHHHHHHHHHHHHHHTCCCEEEEEBCTTCC-------TTSCSBC--HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCE-EEeeCCHHHHHHHHHHHHHcCCCceEEEEEECCCC-------cCCCCCC--HHHHHHHHHHHHcCC
Confidence 466788875 666 36999999999987653 56789999997421 3899999 9999999998866 5
Q ss_pred CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCC
Q 015304 185 GLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGG 235 (409)
Q Consensus 185 ~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG 235 (409)
+|++.||++|++... +++ .+.+.+.++. +++ .+..|++|..
T Consensus 158 ~L~l~GlmTh~a~~d-d~~---~~f~~l~~l~---~~l---~~~~lSmGmS 198 (244)
T 3r79_A 158 KLPVEGLMCIPPAEE-NPG---PHFALLAKLA---GQC---GLEKLSMGMS 198 (244)
T ss_dssp CCCCCEEECCCCTTS-CSH---HHHHHHHHHH---HHH---TCCEEECCCT
T ss_pred CCEEEEEEecCCCCC-CHH---HHHHHHHHHH---HhC---CCCEEEeecc
Confidence 899999999997654 333 2223333332 333 4567776654
No 42
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=89.53 E-value=2.8 Score=37.47 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcC-CCCCCCHHHHH
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFT-NSNTKSFQEAA 250 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~-~~~~~~~~~~~ 250 (409)
.++.++.+.+++.|+++.++|+...-...+.....+.++.+++.++.++++|. + ++.+-+|.... ...+..++.+.
T Consensus 46 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~-~--~v~~~~g~~~~~~~~~~~~~~~~ 122 (278)
T 1i60_A 46 HSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGV-K--YVVAVPLVTEQKIVKEEIKKSSV 122 (278)
T ss_dssp SCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTC-C--EEEEECCBCSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHHHHHHHHHHHHcCC-C--EEEEecCCCCCCCCHHHHHHHHH
Confidence 45666777778889999998887532223566666778888889999999986 3 33333333211 10012244455
Q ss_pred HHHHHHHHhhCCCCCCCCCCcEEEEcCCce
Q 015304 251 SIIKEALHAYFPNELLPGSSLRVISEPGRF 280 (409)
Q Consensus 251 ~~i~~~l~~~~~~~~~~~~~~~l~~EpGR~ 280 (409)
+.+++... +... .++++.+|+-..
T Consensus 123 ~~l~~l~~-~a~~-----~gv~l~lEn~~~ 146 (278)
T 1i60_A 123 DVLTELSD-IAEP-----YGVKIALEFVGH 146 (278)
T ss_dssp HHHHHHHH-HHGG-----GTCEEEEECCCC
T ss_pred HHHHHHHH-HHHh-----cCCEEEEEecCC
Confidence 55544332 2222 257899998753
No 43
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=89.48 E-value=2.4 Score=41.53 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEEE----ee---------CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAF----HI---------GS-AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFS 237 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~----H~---------gs-~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~ 237 (409)
+++.++.+.+++.|+.+.+++. |. |+ ...|++....+++.+++.++.++++|. +.-.+..|.|+.
T Consensus 107 ~d~~~lk~~l~e~GL~l~~i~~~~f~hp~~~~~~Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa-~~lv~w~GdG~~ 185 (438)
T 3m0m_A 107 ADPKELKARGDALGLGFDAMNSNTFSDAPGQAHSYKYGSLSHTNAATRAQAVEHNLECIEIGKAIGS-KALTVWIGDGSN 185 (438)
T ss_dssp CCHHHHHHHHHHHTCEEEEEECCCSSCCTTCSSCCTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC-CEEEECCCCEES
T ss_pred HHHHHHHHHHHHcCCceEEeecccccCchhcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCCccC
Confidence 5677777778888999987765 43 11 123667777889999999999999987 443344454443
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 238 FTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.+ ...+.++..+.+.+.|.+.+... .+++++.+||=
T Consensus 186 ~~--~~~d~~~a~~rl~esL~ei~~~A---~~gv~l~LE~K 221 (438)
T 3m0m_A 186 FP--GQSNFTRAFERYLSAMAEIYKGL---PDDWKLFSEHK 221 (438)
T ss_dssp ST--TTSCHHHHHHHHHHHHHHHHHTC---CTTCEEEEECC
T ss_pred CC--CcCCHHHHHHHHHHHHHHHHHhh---hcCCEEEEccC
Confidence 21 12234444444444554443321 13578999973
No 44
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=88.88 E-value=1.2 Score=39.96 Aligned_cols=60 Identities=22% Similarity=0.150 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEe
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLD 231 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ld 231 (409)
..++.++.+.+++.|+++.+++.+..-...+.+...+.++.+++.++.++++|. +.-.+.
T Consensus 44 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~-~~v~~~ 103 (275)
T 3qc0_A 44 AIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGA-DCLVLV 103 (275)
T ss_dssp HHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTC-SCEEEE
T ss_pred ccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCC-CEEEEe
Confidence 345667777777889999988875432234666667778888899999999987 443444
No 45
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=88.44 E-value=14 Score=35.60 Aligned_cols=144 Identities=19% Similarity=0.306 Sum_probs=78.3
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCC
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKH 159 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~ 159 (409)
|+|+++..|++ +.|.. .++...+..+.++.+.++|++. |-||+-. ++. .
T Consensus 27 G~Dis~~~~~e---~~G~~----y~~~~G~~~d~~~ilk~~G~N~--------------------VRlrvwv--~p~--~ 75 (399)
T 1ur4_A 27 GVDVSSIIALE---ESGVA----FYNESGKKQDIFKTLKEAGVNY--------------------VRVRIWN--DPY--D 75 (399)
T ss_dssp EEECTTHHHHH---HTTCC----CBCTTSCBCCHHHHHHHTTCCE--------------------EEEEECS--CCB--C
T ss_pred EEehhhhHHHH---HcCCe----eeCCCCccchHHHHHHHCCCCE--------------------EEEeeec--CCc--c
Confidence 99999998876 56642 2342222334566667788873 2344431 110 0
Q ss_pred CCCCCc--C-CCCCcccHHHHHHHHHHcCCeEEEEEEeeC-------CCCC-------CHHHHHHHH-HHHHHHHHHHHH
Q 015304 160 PLDSKY--G-VDHHPQEIVPLLEAAEASGLSVVGVAFHIG-------SAAT-------KFAAYRGAI-AAAKAVFETAAR 221 (409)
Q Consensus 160 ~~~srf--G-i~~~~~~~~~~~~~~~~~~l~l~Glh~H~g-------s~~~-------~~~~~~~~i-~~~~~~~~~~~~ 221 (409)
..+.-+ | .+ .+.+.++++.+++.|+++. |-||.+ +|.. +.+.+.+.+ +....+++.+++
T Consensus 76 ~~g~~y~~g~~d--~~~~~~~a~~Ak~~GLkVl-ldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~ 152 (399)
T 1ur4_A 76 ANGNGYGGGNND--LEKAIQIGKRATANGMKLL-ADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKA 152 (399)
T ss_dssp TTCCBCSTTCCC--HHHHHHHHHHHHHTTCEEE-EEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCCCCC--HHHHHHHHHHHHHCCCEEE-EEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 012223 2 23 4566667778888899876 567863 2211 233343333 344556676777
Q ss_pred cCCCCCcEEeecCCCCcCCCCCCCHHHHHHHHHHHHH
Q 015304 222 LGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALH 258 (409)
Q Consensus 222 ~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~~i~~~l~ 258 (409)
.+. .+.++-+|.=..........++.+++.++.+++
T Consensus 153 ~g~-~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~ 188 (399)
T 1ur4_A 153 AGI-DIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQ 188 (399)
T ss_dssp TTC-CEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHH
T ss_pred cCC-CCcEEEEccccccccCCcccHHHHHHHHHHHHH
Confidence 776 778888887322211123457776666654433
No 46
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=87.97 E-value=2.8 Score=38.66 Aligned_cols=97 Identities=9% Similarity=-0.056 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHH
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAAS 251 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~ 251 (409)
+++.++.+.+++.||++.++|+-..-...+.......++.+++.++.++++|. ++|.++|. +.. .....++.+.+
T Consensus 76 ~~~~~l~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~---~~v~~~~~-~~~-~~~~~~~~~~~ 150 (305)
T 3obe_A 76 IASKDYKKMVDDAGLRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGV---SCMVQPSL-PRI-ENEDDAKVVSE 150 (305)
T ss_dssp BCHHHHHHHHHHTTCEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTC---SEEEECCC-CCC-SSHHHHHHHHH
T ss_pred cCHHHHHHHHHHCCCeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCC---CEEEeCCC-CCC-CCHHHHHHHHH
Confidence 37778878888899999888543321222343344556677888888999987 34455532 211 11223555555
Q ss_pred HHHHHHHhhCCCCCCCCCCcEEEEcCCc
Q 015304 252 IIKEALHAYFPNELLPGSSLRVISEPGR 279 (409)
Q Consensus 252 ~i~~~l~~~~~~~~~~~~~~~l~~EpGR 279 (409)
.+++..... .. .++++.+||-.
T Consensus 151 ~l~~l~~~a-~~-----~Gv~l~lEn~~ 172 (305)
T 3obe_A 151 IFNRAGEIT-KK-----AGILWGYHNHS 172 (305)
T ss_dssp HHHHHHHHH-HT-----TTCEEEEECCS
T ss_pred HHHHHHHHH-HH-----cCCEEEEecCc
Confidence 555443322 22 25889998753
No 47
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=86.50 E-value=3.8 Score=37.08 Aligned_cols=98 Identities=16% Similarity=0.218 Sum_probs=60.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCC-------------CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSA-------------ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFS 237 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~-------------~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~ 237 (409)
.+++.++.+.+++.||++..+++|.... ..+.+...+.++.+++.++.++++|. +++.+..|+.
T Consensus 50 ~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~---~~v~~~~G~~ 126 (290)
T 3tva_A 50 REHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGC---PAIGLHIGFV 126 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTC---SEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCC---CEEEEcCCCC
Confidence 5667777788888999999998764211 12334455667788888999999986 3444543432
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 238 FTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.. ..+..++.+.+.+++..... .. .++++.+|+-
T Consensus 127 ~~-~~~~~~~~~~~~l~~l~~~a-~~-----~Gv~l~lE~~ 160 (290)
T 3tva_A 127 PE-SSSPDYSELVRVTQDLLTHA-AN-----HGQAVHLETG 160 (290)
T ss_dssp CC-TTSHHHHHHHHHHHHHHHHH-HT-----TTCEEEEECC
T ss_pred cc-cchHHHHHHHHHHHHHHHHH-HH-----cCCEEEEecC
Confidence 11 12234555666555444332 22 2588999986
No 48
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=86.24 E-value=2.7 Score=38.20 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=59.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEee---CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEe--ecCCCCcCCCCCCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHI---GSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLD--IGGGFSFTNSNTKS 245 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~---gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ld--iGGG~~~~~~~~~~ 245 (409)
.+++.++.+.+++.|+++...|.-. .-...+++...+.++.+++.++.++++|. + ++. +.+|++..+....+
T Consensus 46 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~-~--~v~~~~~~~~~~~~~~~~~ 122 (294)
T 3vni_A 46 DIQINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDV-H--LIGGALYSYWPIDYTKTID 122 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTC-C--EEEESTTSCSSCCTTSCCC
T ss_pred HHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-C--eeeccccCCCCCcCCCCCC
Confidence 5677777778888999998743211 01123566666778888889999999986 3 343 56666543332233
Q ss_pred ----HHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 246 ----FQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 246 ----~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
++.+.+.+++... +... .++++.+||-
T Consensus 123 ~~~~~~~~~~~l~~l~~-~a~~-----~Gv~l~lEn~ 153 (294)
T 3vni_A 123 KKGDWERSVESVREVAK-VAEA-----CGVDFCLEVL 153 (294)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHH-----TTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHH-HHHH-----cCCEEEEEec
Confidence 3334444443332 2222 2578999974
No 49
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=85.96 E-value=9 Score=35.56 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeC-------C-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIG-------S-AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGG 235 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~g-------s-~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG 235 (409)
+++.++.+.+++.|+++..++.+.. + ...+.+....+++.+++.++.++++|. + .+.+-+|
T Consensus 61 ~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa-~--~vv~~~g 129 (333)
T 3ktc_A 61 VTLSEVKDALKDAGLKAIGITPEIYLQKWSRGAFTNPDPAARAAAFELMHESAGIVRELGA-N--YVKVWPG 129 (333)
T ss_dssp CCHHHHHHHHHHHTCEEEEEEECTTSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC-S--EEEECCT
T ss_pred hHHHHHHHHHHHcCCeEEEEecCcCcccccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCC-C--EEEECCC
Confidence 4566677777788999998887532 1 123566667788889999999999987 3 3444444
No 50
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=85.78 E-value=2.9 Score=37.53 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHcCCeEEEEEEeeCCC-------CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCC
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHIGSA-------ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKS 245 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~gs~-------~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~ 245 (409)
++.++.+.+++.|+++.++|+..+.. ..+++...+.++.+++.++.++++|. +++.+..|.+.....+..
T Consensus 49 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lGa---~~v~~~~g~~~~~~~~~~ 125 (269)
T 3ngf_A 49 DADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDC---RTLHAMSGITEGLDRKAC 125 (269)
T ss_dssp CHHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHHTTC---CEEECCBCBCTTSCHHHH
T ss_pred CHHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHHcCC---CEEEEccCCCCCCCHHHH
Confidence 45666677788899999988654310 12334445566778888899999886 345554443221111113
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 246 FQEAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 246 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
++.+.+.+++... +... .++++.+||
T Consensus 126 ~~~~~~~l~~l~~-~a~~-----~Gv~l~lE~ 151 (269)
T 3ngf_A 126 EETFIENFRYAAD-KLAP-----HGITVLVEP 151 (269)
T ss_dssp HHHHHHHHHHHHH-HHGG-----GTCEEEECC
T ss_pred HHHHHHHHHHHHH-HHHH-----cCCEEEEee
Confidence 4445555544333 2222 258899997
No 51
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=85.77 E-value=3.7 Score=37.31 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=58.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEee--CC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCc-CCCCCCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHI--GS--AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSF-TNSNTKS 245 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~--gs--~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~-~~~~~~~ 245 (409)
.+++.++.+.+++.|+++.++|+.. +- ...+.+...+.++.+++.++.++++|. + ++.+.|+... .......
T Consensus 65 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~-~--~v~~~~~~~~~~~~~~~~ 141 (295)
T 3cqj_A 65 REQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGI-R--VIQLAGYDVYYQEANNET 141 (295)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEGGGGTSCTTCSSHHHHHHHHHHHHHHHHHHHHHTC-C--EEEECCCSCSSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-C--EEEECCCCCCcCcCHHHH
Confidence 6667777778888899999987531 11 123566666778888889999999987 3 3444443221 1011123
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCCc
Q 015304 246 FQEAASIIKEALHAYFPNELLPGSSLRVISEPGR 279 (409)
Q Consensus 246 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR 279 (409)
++.+.+.+++... +... .++++.+|+-.
T Consensus 142 ~~~~~~~l~~l~~-~a~~-----~Gv~l~lEn~~ 169 (295)
T 3cqj_A 142 RRRFRDGLKESVE-MASR-----AQVTLAMEIMD 169 (295)
T ss_dssp HHHHHHHHHHHHH-HHHH-----HTCEEEEECCS
T ss_pred HHHHHHHHHHHHH-HHHH-----hCCEEEEeeCC
Confidence 3444444443322 2111 15779999864
No 52
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=84.90 E-value=3.5 Score=37.31 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=58.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCC----CCCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSA--ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTN----SNTK 244 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~--~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~----~~~~ 244 (409)
.+++.++.+.+++.++++.++|...... ..+++...+.++.+++.++.++++|. + ++.+..|++... ..+.
T Consensus 63 ~~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa-~--~v~~~~g~~~~~~~~p~~~~ 139 (287)
T 3kws_A 63 AGRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGS-T--GVIIVPAFNGQVPALPHTME 139 (287)
T ss_dssp GGGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTC-S--EEEECSCCTTCCSBCCSSHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCC-C--EEEEecCcCCcCCCCCCHHH
Confidence 3556777777778899998886542211 23566666778888889999999986 3 455544543211 1112
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 245 SFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 245 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.++.+.+.+++... +... .++++.+||-
T Consensus 140 ~~~~~~~~l~~l~~-~a~~-----~Gv~l~lE~~ 167 (287)
T 3kws_A 140 TRDFLCEQFNEMGT-FAAQ-----HGTSVIFEPL 167 (287)
T ss_dssp HHHHHHHHHHHHHH-HHHH-----TTCCEEECCC
T ss_pred HHHHHHHHHHHHHH-HHHH-----cCCEEEEEec
Confidence 23444444443322 2222 2467999964
No 53
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=84.04 E-value=4 Score=36.73 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCC----CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGS----AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSF 246 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs----~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~ 246 (409)
.+++.++.+.+++.|+++..+.+|... ...+.+.....++.+++.++.++++|. +.-.++.|.. .. .+.
T Consensus 46 ~~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~-~~v~~~~g~~--~~----~~~ 118 (287)
T 2x7v_A 46 DEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICRKLGI-RYLNIHPGSH--LG----TGE 118 (287)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTC-CEEEECCEEC--TT----SCH
T ss_pred HHHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecCCC--CC----CCH
Confidence 456777777778889986444556432 113555666778888889999999987 4333333332 11 123
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 247 QEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 247 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
++..+.+.+.+.+..... .++++.+|+-
T Consensus 119 ~~~~~~~~~~l~~l~~~~----~gv~l~lEn~ 146 (287)
T 2x7v_A 119 EEGIDRIVRGLNEVLNNT----EGVVILLENV 146 (287)
T ss_dssp HHHHHHHHHHHHHHHTTC----CSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHccc----CCCEEEEeCC
Confidence 333334444444443321 3688999975
No 54
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=83.82 E-value=28 Score=32.45 Aligned_cols=139 Identities=18% Similarity=0.238 Sum_probs=78.7
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEe--cCCCCCC
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIK--PPDDSGA 157 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~--~~~~~~~ 157 (409)
|+|+++..|++ +.|.. .++...+..+.++.+.+.|++.+ -+||. |.
T Consensus 6 g~d~s~~~~~e---~~g~~----~~~~~G~~~~~~~ilk~~G~n~v--------------------Rlri~v~P~----- 53 (334)
T 1fob_A 6 GADISSLLLLE---DEGYS----YKNLNGQTQALETILADAGINSI--------------------RQRVWVNPS----- 53 (334)
T ss_dssp EEECTTHHHHH---HTTCC----CBCTTSCBCCHHHHHHHHTCCEE--------------------EEEECSCCT-----
T ss_pred eeeHHHHHHHH---HcCCE----EECCCCCCchHHHHHHHcCCCEE--------------------EEEEEECCC-----
Confidence 88999998876 56653 24433334456777778888743 23443 31
Q ss_pred CCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCC--------------CCCHHHHHHHHHH-HHHHHHHHHHc
Q 015304 158 KHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSA--------------ATKFAAYRGAIAA-AKAVFETAARL 222 (409)
Q Consensus 158 ~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~--------------~~~~~~~~~~i~~-~~~~~~~~~~~ 222 (409)
++. .+ .+...++++.+++.|+++. +-+|.+.. ..+.+.+.+.+.+ ...+++.+++.
T Consensus 54 ----~g~--~d--~~~~~~~~~~ak~~Gl~v~-ld~hysd~wadP~~q~~p~~W~~~~~~~~~~~~~~yt~~v~~~l~~~ 124 (334)
T 1fob_A 54 ----DGS--YD--LDYNLELAKRVKAAGMSLY-LDLHLSDTWADPSDQTTPSGWSTTDLGTLKWQLYNYTLEVCNTFAEN 124 (334)
T ss_dssp ----TCT--TC--HHHHHHHHHHHHHTTCEEE-EEECCSSSCCBTTBCBCCTTSCSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----CCc--cC--HHHHHHHHHHHHHCCCEEE-EEeccCCCCCCcccccCccccccCChHHHHHHHHHHHHHHHHHHHhC
Confidence 111 12 4667778888888998765 45665311 1123344444433 34556666777
Q ss_pred CCCCCcEEeecCC----CCcCCCCCCCHHHHHHHHHHHHHhh
Q 015304 223 GNNKMRVLDIGGG----FSFTNSNTKSFQEAASIIKEALHAY 260 (409)
Q Consensus 223 g~~~~~~ldiGGG----~~~~~~~~~~~~~~~~~i~~~l~~~ 260 (409)
|. .+.++.+|.= +-.+......++.+++.++.+.+..
T Consensus 125 g~-~v~~v~vGNE~~~G~lwp~g~~~~~~~l~~~~~~a~~av 165 (334)
T 1fob_A 125 DI-DIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGV 165 (334)
T ss_dssp TC-CCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHH
T ss_pred CC-CCCEEEEeecCcccccCCCCcchhHHHHHHHHHHHHHHH
Confidence 76 7788888863 2212111235677766666554443
No 55
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=82.53 E-value=4.6 Score=35.74 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCC-------CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCc-CCCCCCC
Q 015304 174 IVPLLEAAEASGLSVVGVAFHIGS-------AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSF-TNSNTKS 245 (409)
Q Consensus 174 ~~~~~~~~~~~~l~l~Glh~H~gs-------~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~-~~~~~~~ 245 (409)
+.++.+.+++.|+++.++|+..+. ...+++...+.++.+++.++.++++|. +++.+..|... .......
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~---~~v~~~~g~~~~~~~~~~~ 118 (260)
T 1k77_A 42 TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNC---EQVHVMAGVVPAGEDAERY 118 (260)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHHHHHHHTTC---SEEECCCCBCCTTSCHHHH
T ss_pred HHHHHHHHHHcCCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHHHHHHHHcCC---CEEEECcCCCCCCCCHHHH
Confidence 556666677889999998875421 112344445667778888999999986 34555444321 1101112
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 246 FQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 246 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
++.+.+.+++... +... .++++.+||-
T Consensus 119 ~~~~~~~l~~l~~-~a~~-----~gv~l~~E~~ 145 (260)
T 1k77_A 119 RAVFIDNIRYAAD-RFAP-----HGKRILVEAL 145 (260)
T ss_dssp HHHHHHHHHHHHH-HHGG-----GTCEEEECCC
T ss_pred HHHHHHHHHHHHH-HHHH-----cCCEEEEEeC
Confidence 3344444444332 2222 2578999985
No 56
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=81.22 E-value=12 Score=34.32 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=74.9
Q ss_pred EeHHHHHHHHHHHHHh-CCCcceEEe--cCcCC----cHHHHHHHHHc-CCc--EEEcCHHHHHHHHhCCCCCCcEEEe-
Q 015304 37 LDLGVVVTLYNQMISK-LPMIHPHYA--VKCNP----EPALLEALAAL-GSN--FDCASRSEIEAVLALGVSPDRIIYA- 105 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~-~~~~~i~ya--vKan~----~~~vl~~l~~~-G~g--~~vaS~~E~~~a~~~G~~~~~Ii~~- 105 (409)
++.+...+-++++.+. ++-+++.+. .|.-+ ..++++.+.+. ++. .-+.+...++.+.++|++ .|.+.
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~n~~~i~~a~~~G~~--~V~i~~ 100 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVPNMKGYEAAAAAHAD--EIAVFI 100 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECSSHHHHHHHHHTTCS--EEEEEE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHCCCC--EEEEEE
Confidence 6666666666666432 223344331 22111 34555655544 442 223677778888888875 33333
Q ss_pred -CC--------CCCHHH--------HHHHHHcCCcEEE------e-------cCHHHHHHHHhHCC--CCeEEEEEecCC
Q 015304 106 -NP--------CKPVSH--------IKYAANVGVNLTT------F-------DSVEELHKIRKWHP--KCDLLIRIKPPD 153 (409)
Q Consensus 106 -gp--------~k~~~~--------i~~a~~~gv~~~~------v-------ds~~el~~i~~~~~--~~~v~lRv~~~~ 153 (409)
+. .++.++ +++|.+.|+. +. + .+.+++..+.+... .+. .|.+. +
T Consensus 101 ~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~-V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d-~i~l~--D 176 (295)
T 1ydn_A 101 SASEGFSKANINCTIAESIERLSPVIGAAINDGLA-IRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCH-EVSLG--D 176 (295)
T ss_dssp ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCE-EEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCS-EEEEE--E
T ss_pred ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCC-EEEec--C
Confidence 22 233332 3455567775 22 2 25677666655321 111 22332 1
Q ss_pred CCCCCCCCCCCcCCCCCcccHHHHHHHHHHc-C-CeEEEEEEeeCCCC
Q 015304 154 DSGAKHPLDSKYGVDHHPQEIVPLLEAAEAS-G-LSVVGVAFHIGSAA 199 (409)
Q Consensus 154 ~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~-~-l~l~Glh~H~gs~~ 199 (409)
+.+. .. |++..++++.+++. . +. .++|+|-.++.
T Consensus 177 -------t~G~--~~--P~~~~~lv~~l~~~~~~~~-l~~H~Hn~~Gl 212 (295)
T 1ydn_A 177 -------TIGR--GT--PDTVAAMLDAVLAIAPAHS-LAGHYHDTGGR 212 (295)
T ss_dssp -------TTSC--CC--HHHHHHHHHHHHTTSCGGG-EEEEEBCTTSC
T ss_pred -------CCCC--cC--HHHHHHHHHHHHHhCCCCe-EEEEECCCcch
Confidence 1111 34 78888888888653 3 33 57999987654
No 57
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=80.38 E-value=23 Score=31.19 Aligned_cols=92 Identities=16% Similarity=0.106 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHH-
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEA- 249 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~- 249 (409)
.+++.++.+.+++.++++.++|+...-...+. . ..+.+++.++.++++|. +++.+..|.... ..++.+
T Consensus 50 ~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~-~---~~~~~~~~i~~a~~lG~---~~v~~~~g~~~~----~~~~~~~ 118 (272)
T 2q02_A 50 DLNYNQVRNLAEKYGLEIVTINAVYPFNQLTE-E---VVKKTEGLLRDAQGVGA---RALVLCPLNDGT----IVPPEVT 118 (272)
T ss_dssp TCCHHHHHHHHHHTTCEEEEEEEETTTTSCCH-H---HHHHHHHHHHHHHHHTC---SEEEECCCCSSB----CCCHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEechhhhccCCcHH-H---HHHHHHHHHHHHHHhCC---CEEEEccCCCch----hHHHHHH
Confidence 45677777777888999999988654322232 2 33556778888888886 344444443221 345666
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEEEcCCc
Q 015304 250 ASIIKEALHAYFPNELLPGSSLRVISEPGR 279 (409)
Q Consensus 250 ~~~i~~~l~~~~~~~~~~~~~~~l~~EpGR 279 (409)
.+.+++..... .. .++++.+||-.
T Consensus 119 ~~~l~~l~~~a-~~-----~gv~l~~E~~~ 142 (272)
T 2q02_A 119 VEAIKRLSDLF-AR-----YDIQGLVEPLG 142 (272)
T ss_dssp HHHHHHHHHHH-HT-----TTCEEEECCCC
T ss_pred HHHHHHHHHHH-HH-----cCCEEEEEecC
Confidence 66665544322 22 25789999863
No 58
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=78.83 E-value=26 Score=29.90 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCCcceEEecCcCCcH-HHHHHHHHcCC-cEEEcCH------HHH-HHHHhCCCCCCcEE--EeCCCCCH
Q 015304 43 VTLYNQMISKLPMIHPHYAVKCNPEP-ALLEALAALGS-NFDCASR------SEI-EAVLALGVSPDRII--YANPCKPV 111 (409)
Q Consensus 43 ~~n~~~~~~~~~~~~i~yavKan~~~-~vl~~l~~~G~-g~~vaS~------~E~-~~a~~~G~~~~~Ii--~~gp~k~~ 111 (409)
.+.++++++.+++..+++-.|....+ .+++.+.+.|+ ++-+... .++ +.+++.|. +++ +.+|....
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~---~~~v~~~~~~t~~ 117 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGK---QVVVDMICVDDLP 117 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTC---EEEEECTTCSSHH
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCC---eEEEEecCCCCHH
Confidence 35677788877777777788877644 45899999998 5555432 232 23455664 344 34564334
Q ss_pred HHHHHHHHcCCcEEEec-----------CHHHHHHHHhHCC
Q 015304 112 SHIKYAANVGVNLTTFD-----------SVEELHKIRKWHP 141 (409)
Q Consensus 112 ~~i~~a~~~gv~~~~vd-----------s~~el~~i~~~~~ 141 (409)
+.++.+.+.|+..+.++ +.+.+.++.+..+
T Consensus 118 ~~~~~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~ 158 (211)
T 3f4w_A 118 ARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRR 158 (211)
T ss_dssp HHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCEEEEcCCCcccccCCCCHHHHHHHHHHcC
Confidence 67888899888755543 5666777766544
No 59
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=78.70 E-value=4.1 Score=36.66 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=56.3
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCC----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCC-CCCCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSA----ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTN-SNTKS 245 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~----~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~-~~~~~ 245 (409)
.+++.++.+.+++.++++..+.+|.... ..+.+...+.++.+++.++.++++|. + ++.+..|..... ..+..
T Consensus 46 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~A~~lGa-~--~v~~~~g~~~~~~~~~~~ 122 (285)
T 1qtw_A 46 TQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGL-S--LLNFHPGSHLMQISEEDC 122 (285)
T ss_dssp HHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC-C--EEEECCCBCTTTSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCceeEEecCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCC-C--EEEECcCCCCCCCCHHHH
Confidence 4667777777788898864445564321 13556666778888889999999986 3 344433322211 01112
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 246 FQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 246 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
++.+.+.+++.+.+ . .++++.+|+-
T Consensus 123 ~~~~~~~l~~l~a~---~-----~gv~l~lEn~ 147 (285)
T 1qtw_A 123 LARIAESINIALDK---T-----QGVTAVIENT 147 (285)
T ss_dssp HHHHHHHHHHHHHH---C-----SSCEEEEECC
T ss_pred HHHHHHHHHHHHhc---c-----CCCEEEEecC
Confidence 33444445544432 1 2578999974
No 60
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=78.58 E-value=4.8 Score=36.05 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCC-CCCCHHHHH
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNS-NTKSFQEAA 250 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~-~~~~~~~~~ 250 (409)
.++.++.+.+++.|+++.++++...-.. ....+.+.++.+++.++.++++|. + ++.++- .+.... ....++.+.
T Consensus 47 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~A~~lG~-~--~v~~~~-~p~~~~~~~~~~~~~~ 121 (281)
T 3u0h_A 47 HGDAAVEAMFQRRGLVLANLGLPLNLYD-SEPVFLRELSLLPDRARLCARLGA-R--SVTAFL-WPSMDEEPVRYISQLA 121 (281)
T ss_dssp HCHHHHHHHHHTTTCEECCEECCSCTTS-CHHHHHHHHHTHHHHHHHHHHTTC-C--EEEEEC-CSEESSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCceEEecccccccC-CCHHHHHHHHHHHHHHHHHHHcCC-C--EEEEee-cCCCCCcchhhHHHHH
Confidence 4566677777788999998876542221 233456677788889999999987 3 343221 111110 011334444
Q ss_pred HHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 251 SIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 251 ~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
+.+++... +... .++++.+||-
T Consensus 122 ~~l~~l~~-~a~~-----~Gv~l~lE~~ 143 (281)
T 3u0h_A 122 RRIRQVAV-ELLP-----LGMRVGLEYV 143 (281)
T ss_dssp HHHHHHHH-HHGG-----GTCEEEEECC
T ss_pred HHHHHHHH-HHHH-----cCCEEEEEec
Confidence 55544333 2222 2588999975
No 61
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=78.22 E-value=15 Score=33.01 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEe-------eCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFH-------IGSAATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H-------~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
.++.++.+.+++.|+++.++|.. ..-...+.+...+.++.+++.++.++++|.
T Consensus 68 ~~~~~~~~~l~~~gl~~~~~~~~~p~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~ 127 (290)
T 2zvr_A 68 VDWNEVKILSEELNLPICAIGTGQAYLADGLSLTHPNDEIRKKAIERVVKHTEVAGMFGA 127 (290)
T ss_dssp SCHHHHHHHHHHHTCCEEEEECTHHHHTTCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHcCCeEEEEeccCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45667777777889999999882 222223555566778888889999999986
No 62
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=77.50 E-value=18 Score=33.32 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=16.1
Q ss_pred cccHHHHHHHHHHc--CCeEEEEEEeeCCCC
Q 015304 171 PQEIVPLLEAAEAS--GLSVVGVAFHIGSAA 199 (409)
Q Consensus 171 ~~~~~~~~~~~~~~--~l~l~Glh~H~gs~~ 199 (409)
|++..++++.+++. ++. .++|+|-.++.
T Consensus 187 P~~~~~lv~~l~~~~~~~~-l~~H~Hn~~Gl 216 (302)
T 2ftp_A 187 AGATRRLIEAVASEVPRER-LAGHFHDTYGQ 216 (302)
T ss_dssp HHHHHHHHHHHTTTSCGGG-EEEEEBCTTSC
T ss_pred HHHHHHHHHHHHHhCCCCe-EEEEeCCCccH
Confidence 56666666666442 233 46777766553
No 63
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=76.14 E-value=17 Score=34.18 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHH-c--CCeEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEA-S--GLSVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~--~l~l~Glh~H~gs~ 198 (409)
++++.++++.+++ . .+ ..++|+|--.+
T Consensus 177 P~~v~~lv~~l~~~~~~~~-pi~~H~Hn~~G 206 (345)
T 1nvm_A 177 MNDIRDRMRAFKAVLKPET-QVGMHAHHNLS 206 (345)
T ss_dssp HHHHHHHHHHHHHHSCTTS-EEEEECBCTTS
T ss_pred HHHHHHHHHHHHHhcCCCc-eEEEEECCCcc
Confidence 7888888888865 3 34 56899997544
No 64
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=74.46 E-value=51 Score=30.60 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=77.0
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCC
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKH 159 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~ 159 (409)
|+|+++..|++ +.|.. .++...+..+.++.+.+.|++.+ -||+.. ++.
T Consensus 6 G~d~s~~~~~e---~~g~~----~~~~~G~~~d~~~ilk~~G~N~V--------------------Ri~~w~--~P~--- 53 (332)
T 1hjs_A 6 GVDWSSVVVEE---RAGVS----YKNTNGNAQPLENILAANGVNTV--------------------RQRVWV--NPA--- 53 (332)
T ss_dssp EEECTTHHHHH---HTTCC----CBCTTSCBCCHHHHHHHTTCCEE--------------------EEEECS--SCT---
T ss_pred eeeHHHHHHHH---HcCCE----EECCCCCcccHHHHHHHCCCCEE--------------------EEeeee--CCC---
Confidence 88999998876 45642 23322333355666677888732 233321 110
Q ss_pred CCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeC-------CCCC------CHHHHHHH-HHHHHHHHHHHHHcCCC
Q 015304 160 PLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIG-------SAAT------KFAAYRGA-IAAAKAVFETAARLGNN 225 (409)
Q Consensus 160 ~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~g-------s~~~------~~~~~~~~-i~~~~~~~~~~~~~g~~ 225 (409)
-|.. ..+.+.++++.+++.|+++. +-+|.+ +|.. +.+.+.+. .+...++++.+++.+.
T Consensus 54 -----~g~~-~~~~~~~~~~~A~~~GlkV~-ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~~~yt~~vl~~l~~~g~- 125 (332)
T 1hjs_A 54 -----DGNY-NLDYNIAIAKRAKAAGLGVY-IDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKLQNAGI- 125 (332)
T ss_dssp -----TCTT-SHHHHHHHHHHHHHTTCEEE-EEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred -----CCcC-CHHHHHHHHHHHHHCCCEEE-EEeccCCCcCCccccCCccccccchHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 1221 14566777888888898765 456752 2211 22333332 3444566666777776
Q ss_pred CCcEEeecCCCCc----CCCCCCCHHHHHHHHHHHHHhh
Q 015304 226 KMRVLDIGGGFSF----TNSNTKSFQEAASIIKEALHAY 260 (409)
Q Consensus 226 ~~~~ldiGGG~~~----~~~~~~~~~~~~~~i~~~l~~~ 260 (409)
.+.++-+|.-+.. +.....+++.+++.++.+.+..
T Consensus 126 ~~~~v~vGNEi~~g~~w~~g~~~~~~~~~~l~~~~~~av 164 (332)
T 1hjs_A 126 QPTIVSIGNEIRAGLLWPTGRTENWANIARLLHSAAWGI 164 (332)
T ss_dssp CCSEEEESSSGGGEETBTTEETTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecccccccCcCCCccCHHHHHHHHHHHHHHH
Confidence 7788888875332 1111235677766666655444
No 65
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=74.04 E-value=30 Score=31.21 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=54.1
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHHHHHH
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAAS 251 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~~~~~ 251 (409)
.++.++.+.+++.||++..++....-...+.... +.++.+++.++.++++|. +.+.+|.+ + ..+++.+.+
T Consensus 68 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~A~~lGa---~~v~~g~~-~-----~~~~~~~~~ 137 (296)
T 2g0w_A 68 LTDEDMLRILDEHNMKVTEVEYITQWGTAEDRTA-EQQKKEQTTFHMARLFGV---KHINCGLL-E-----KIPEEQIIV 137 (296)
T ss_dssp CCHHHHHHHHHHTTCEEEEEECBCCCSSTTTCCH-HHHHHHHHHHHHHHHHTC---CEEEECCC-S-----CCCHHHHHH
T ss_pred CcHHHHHHHHHHcCCceEeehhhhccccCChHHH-HHHHHHHHHHHHHHHcCC---CEEEEcCC-C-----CCCHHHHHH
Confidence 3456666777788999998876321111122222 235667778888888886 34556543 1 124677777
Q ss_pred HHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 252 IIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 252 ~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.+++..... . ++++.+||-
T Consensus 138 ~l~~l~~~a--~------Gv~l~lE~~ 156 (296)
T 2g0w_A 138 ALGELCDRA--E------ELIIGLEFM 156 (296)
T ss_dssp HHHHHHHHH--T------TSEEEEECC
T ss_pred HHHHHHHHh--c------CCEEEEEec
Confidence 776655443 2 477999975
No 66
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=72.47 E-value=36 Score=30.77 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCC----CCC-HHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSA----ATK-FAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKS 245 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~----~~~-~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~ 245 (409)
.+++.++.+.+++.++.... +|.... ..+ .+.+.+.++.+++.++.++++|. +.-.++.|. .. ..+
T Consensus 52 ~~~~~~~~~~l~~~gl~~~~--~h~~~~~nl~s~d~~~~r~~~~~~~~~~i~~A~~lGa-~~vv~h~g~--~~----~~~ 122 (303)
T 3aal_A 52 ELNIEAGRQHMQAHGIEEIV--VHAPYIINIGNTTNLDTFSLGVDFLRAEIERTEAIGA-KQLVLHPGA--HV----GAG 122 (303)
T ss_dssp GGCHHHHHHHHHHTTCCEEE--EECCTTCCTTCSSCHHHHHHHHHHHHHHHHHHHHHTC-SEEEECCEE--CT----TSC
T ss_pred HHHHHHHHHHHHHcCCceEE--EeccccccCCCCCcHHHHHHHHHHHHHHHHHHHHcCC-CEEEECCCc--CC----CCC
Confidence 56777777778888884433 454221 124 56667788888889999999987 433333332 11 124
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 246 FQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 246 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.++..+.+.+.|++..... .++++.+|+-
T Consensus 123 ~~~~~~~~~~~l~~l~~~a----~gv~l~lEn~ 151 (303)
T 3aal_A 123 VEAGLRQIIRGLNEVLTRE----QNVQIALETM 151 (303)
T ss_dssp HHHHHHHHHHHHHHHCCSS----CSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhC----CCCEEEEecC
Confidence 4555556666677665331 3688999975
No 67
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=72.28 E-value=6.8 Score=35.24 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=54.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcC-CCCCCCHHHH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFT-NSNTKSFQEA 249 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~-~~~~~~~~~~ 249 (409)
.+++.++.+.+++.|+++.+++.|.+... .....+.++.+++.++.++++|. +++.+..|.... ......++.+
T Consensus 47 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~A~~lG~---~~v~~~~g~~~~~~~~~~~~~~~ 121 (286)
T 3dx5_A 47 YETTERELNCLKDKTLEITMISDYLDISL--SADFEKTIEKCEQLAILANWFKT---NKIRTFAGQKGSADFSQQERQEY 121 (286)
T ss_dssp HHHHHHHHHHTGGGTCCEEEEECCCCCST--TSCHHHHHHHHHHHHHHHHHHTC---CEEEECSCSSCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCCC--chhHHHHHHHHHHHHHHHHHhCC---CEEEEcCCCCCcccCcHHHHHHH
Confidence 35566666666778999998876664322 22234456677778888888886 445554443221 1111134444
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 250 ASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 250 ~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
.+.++.... +... .++++.+|+-
T Consensus 122 ~~~l~~l~~-~a~~-----~Gv~l~lE~~ 144 (286)
T 3dx5_A 122 VNRIRMICE-LFAQ-----HNMYVLLETH 144 (286)
T ss_dssp HHHHHHHHH-HHHH-----TTCEEEEECC
T ss_pred HHHHHHHHH-HHHH-----hCCEEEEecC
Confidence 444444332 2222 2577888875
No 68
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=72.11 E-value=15 Score=35.04 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeC--------C-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCC-cCCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIG--------S-AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFS-FTNS 241 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~g--------s-~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~-~~~~ 241 (409)
+++.++.+.+++.||++..+|.... + ...+.+.....++.+++.++.++++|. + .+.+.+|.. ..+.
T Consensus 69 ~~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa-~--~vv~~~G~~g~~~~ 145 (387)
T 1bxb_A 69 QIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGA-E--IYVVWPGREGAEVE 145 (387)
T ss_dssp HHHHHHHHHHHHHTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC-C--EEEECCTTCEESCG
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-C--EEEECCCCCCccCC
Confidence 3455666667778999988875432 1 123455566778888889999999987 3 455555532 1111
Q ss_pred ----CCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcCC
Q 015304 242 ----NTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278 (409)
Q Consensus 242 ----~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~EpG 278 (409)
....++.+.+.+++... +..+.+ .++++.+||-
T Consensus 146 ~~~~~~~~~~~~~e~L~~l~~-~a~~~g---~gv~l~lE~~ 182 (387)
T 1bxb_A 146 ATGKARKVWDWVREALNFMAA-YAEDQG---YGYRFALEPK 182 (387)
T ss_dssp GGCGGGTHHHHHHHHHHHHHH-HHHHHT---CCCEEEECCC
T ss_pred ccCCHHHHHHHHHHHHHHHHH-HHHHhC---CCcEEEEecC
Confidence 11234555555554332 211100 1477999985
No 69
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=71.49 E-value=58 Score=29.31 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=74.0
Q ss_pred EEeeccccHHHHHHHHHhhcCCCCCccE-----------EEEeHHHHHHHHHHHHHhCCCcceE-EecCcCCcHHHHHHH
Q 015304 7 TTVVTKEELTEFVRSTILKRQEFDEVPF-----------YILDLGVVVTLYNQMISKLPMIHPH-YAVKCNPEPALLEAL 74 (409)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~t~P~-----------~v~d~~~l~~n~~~~~~~~~~~~i~-yavKan~~~~vl~~l 74 (409)
-|-+.|.+.++.++.--....-.+| .| ..-|.....+..+.+.+ .+++++ |. ++++.+++.+
T Consensus 68 pntaG~~taeeAv~~a~lare~~gt-~~iKlEvi~d~~~l~pD~~~tv~aa~~L~k--~Gf~Vlpy~---~~D~~~ak~l 141 (268)
T 2htm_A 68 PNTAGARTAEEAVRLARLGRLLTGE-RWVKLEVIPDPTYLLPDPLETLKAAERLIE--EDFLVLPYM---GPDLVLAKRL 141 (268)
T ss_dssp EBCTTCCSHHHHHHHHHHHHHHHCC-SEEBCCCCSCTTTTCCCHHHHHHHHHHHHH--TTCEECCEE---CSCHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHhhhHhcCc-ceeeeeeccCccccCcCHHHHHHHHHHHHH--CCCEEeecc---CCCHHHHHHH
Confidence 3446788888887522111112334 33 24566666666666654 255555 43 5788999999
Q ss_pred HHcCC-cEEE-----------cCHHHHHHHHh-CCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 75 AALGS-NFDC-----------ASRSEIEAVLA-LGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 75 ~~~G~-g~~v-----------aS~~E~~~a~~-~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
.+.|+ .+.- .+++-++.+++ .. +.-.++..|...++++...|++.|+.-+.+.|
T Consensus 142 ~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~-~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgS 208 (268)
T 2htm_A 142 AALGTATVMPLAAPIGSGWGVRTRALLELFAREKA-SLPPVVVDAGLGLPSHAAEVMELGLDAVLVNT 208 (268)
T ss_dssp HHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTT-TSSCBEEESCCCSHHHHHHHHHTTCCEEEESH
T ss_pred HhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcC-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 98876 4443 45666777777 32 20247788999999999999999997555544
No 70
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=70.97 E-value=12 Score=32.10 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=53.2
Q ss_pred EEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHH
Q 015304 34 FYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVS 112 (409)
Q Consensus 34 ~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~ 112 (409)
+|++|-.++..-++.+++.-|+ +++++. ..|.+++.+. ...+ -+|+-.|-..+++
T Consensus 108 ~FliDS~al~~~~~~i~~~~PD~iEiLPG----i~p~iI~~i~-----------------~~~~---~PiIaGGlI~~~e 163 (192)
T 3kts_A 108 LFMIDSSAYNKGVALIQKVQPDCIELLPG----IIPEQVQKMT-----------------QKLH---IPVIAGGLIETSE 163 (192)
T ss_dssp EECCSHHHHHHHHHHHHHHCCSEEEEECT----TCHHHHHHHH-----------------HHHC---CCEEEESSCCSHH
T ss_pred EEEEEcchHHHHHHHHhhcCCCEEEECCc----hhHHHHHHHH-----------------HhcC---CCEEEECCcCCHH
Confidence 6889999999999999988786 666644 2455555442 2233 3588899999999
Q ss_pred HHHHHHHcCCcEEEecC
Q 015304 113 HIKYAANVGVNLTTFDS 129 (409)
Q Consensus 113 ~i~~a~~~gv~~~~vds 129 (409)
+++.|++.|+..++..+
T Consensus 164 dv~~al~aGA~aVsTs~ 180 (192)
T 3kts_A 164 QVNQVIASGAIAVTTSN 180 (192)
T ss_dssp HHHHHHTTTEEEEEECC
T ss_pred HHHHHHHcCCeEEEeCC
Confidence 99999999987555544
No 71
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=70.12 E-value=9.7 Score=36.43 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeC--------C-CCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIG--------S-AATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~g--------s-~~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
+++.++.+.+++.||++..++.... + ...+.+....+++.+++.++.++++|.
T Consensus 69 ~~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~spd~~~r~~~i~~~~~~i~~A~~LGa 130 (393)
T 1xim_A 69 GIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGA 130 (393)
T ss_dssp HHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666667778999988876431 1 123555566778888899999999987
No 72
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=68.92 E-value=11 Score=36.06 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHcCCeEEEEEEee--------CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCC
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHI--------GS-AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGG 235 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~--------gs-~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG 235 (409)
.+.++.+.+++.||++..++... +. ...+.+...+.++.+++.++.++++|. + .+.+-+|
T Consensus 70 ~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa-~--~vvv~~G 138 (394)
T 1xla_A 70 ILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGA-E--TFVMWGG 138 (394)
T ss_dssp HHHHHHHHHHHHCCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHTTC-S--EEEECCT
T ss_pred HHHHHHHHHHHcCCeEEEEecCccCCccccCCccCCCCHHHHHHHHHHHHHHHHHHHHhCC-C--EEEECCC
Confidence 34555566677899998887632 11 123455566788889999999999987 4 4444444
No 73
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=68.37 E-value=13 Score=35.38 Aligned_cols=61 Identities=25% Similarity=0.275 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHcCCeEEEEEEee--------CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCC
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHI--------GS-AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGF 236 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~--------gs-~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~ 236 (409)
++.++.+.+++.||++..+|... |. ...+.+...+.++.+++.++.++++|. + .+.+.+|.
T Consensus 70 ~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa-~--~vvv~~g~ 139 (386)
T 1muw_A 70 HIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGA-K--TYVAWGGR 139 (386)
T ss_dssp HHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC-S--EEEECCTT
T ss_pred HHHHHHHHHHHhCCeEEEEecccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-C--EEEECCCC
Confidence 45556666677899999887632 11 123455566778888999999999987 3 45555554
No 74
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=66.67 E-value=37 Score=31.19 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=65.3
Q ss_pred CCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCc--------------------HHHHHHHHHcCC-cEE----E
Q 015304 29 FDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPE--------------------PALLEALAALGS-NFD----C 83 (409)
Q Consensus 29 ~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~--------------------~~vl~~l~~~G~-g~~----v 83 (409)
... ..++.+.+ .+.++++++..|++.+.|-+..... ..+.+.+.+.|+ .+. .
T Consensus 179 ~~~-~v~i~SF~--~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 255 (313)
T 3l12_A 179 MEP-RTVMHSFD--WALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPDYDRMTESLPQAVASAGGQLWCPYFLD 255 (313)
T ss_dssp CGG-GEEEEESC--HHHHHHHHHHCTTSCEEEEECCCC-------------CCCTTTCCSCHHHHHHHHTCSEEEEBGGG
T ss_pred CCC-CEEEEcCC--HHHHHHHHHHCCCCcEEEEeccccccccccccccccccccchhccccHHHHHHHhCCcEEecchhc
Confidence 335 66665544 2345667777787766666544331 012344555554 333 3
Q ss_pred cCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH
Q 015304 84 ASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKW 139 (409)
Q Consensus 84 aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~ 139 (409)
.+..-++.+++.|.. -..++ . -++++++.+++.||.-++.|..+.+..+.+.
T Consensus 256 ~~~~~v~~~~~~Gl~--V~~WT-V-n~~~~~~~l~~~GVDgIiTD~P~~~~~~l~~ 307 (313)
T 3l12_A 256 VTPELVAEAHDLGLI--VLTWT-V-NEPEDIRRMATTGVDGIVTDYPGRTQRILID 307 (313)
T ss_dssp CCHHHHHHHHHTTCE--EEEBC-C-CSHHHHHHHHHHTCSEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCE--EEEEc-C-CCHHHHHHHHHcCCCEEEeCCHHHHHHHHHh
Confidence 467778888888862 33444 3 4678999999999987778999988877543
No 75
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=66.05 E-value=37 Score=29.65 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=47.4
Q ss_pred EEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCC------c-EEEecCHHHHHHHHhHCCCCeEEEEEec
Q 015304 82 DCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGV------N-LTTFDSVEELHKIRKWHPKCDLLIRIKP 151 (409)
Q Consensus 82 ~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv------~-~~~vds~~el~~i~~~~~~~~v~lRv~~ 151 (409)
.|-+.++++.+.++|. +++.+ |..+++-++.+.++|+ . +.-+.+.+|+....+...+ .|++.|
T Consensus 71 TVlt~~~a~~ai~AGA---~fivs-P~~~~evi~~~~~~~v~~~~~~~~~PG~~TptE~~~A~~~Gad---~vK~FP 140 (217)
T 3lab_A 71 TVCTADDFQKAIDAGA---QFIVS-PGLTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQAGIT---QLKCFP 140 (217)
T ss_dssp CCCSHHHHHHHHHHTC---SEEEE-SSCCHHHHHHHHHHHHHCSCCCEEEEEECSHHHHHHHHHTTCC---EEEETT
T ss_pred cccCHHHHHHHHHcCC---CEEEe-CCCcHHHHHHHHHcCCCccCCCeEeCCCCCHHHHHHHHHcCCC---EEEECc
Confidence 3678999999999994 56655 5678899999998888 5 4578999999988776533 245554
No 76
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=65.94 E-value=27 Score=31.30 Aligned_cols=56 Identities=13% Similarity=-0.014 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEee
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDI 232 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldi 232 (409)
++.++.+.+++.+|++..++ .+. ..+++...+.++.+++.++.++++|. +.-.+..
T Consensus 56 ~~~~~~~~l~~~gl~~~~~~--~~~-~~~~~~~~~~~~~~~~~i~~a~~lG~-~~v~~~~ 111 (301)
T 3cny_A 56 GPEKLNYELKLRNLEIAGQW--FSS-YIIRDGIEKASEAFEKHCQYLKAINA-PVAVVSE 111 (301)
T ss_dssp CHHHHHHHHHHTTCEECEEE--EEE-CHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEe--ccC-CCChhhHHHHHHHHHHHHHHHHHcCC-CEEEecC
Confidence 45566666778899998873 322 12344455677888889999999987 4333443
No 77
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=64.01 E-value=1.1e+02 Score=29.60 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHH-cCCeEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEA-SGLSVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~l~Glh~H~gs~ 198 (409)
|.++.++++.++. .++. .++|+|--.+
T Consensus 208 P~~v~~lv~~l~~~~~~~-i~~H~Hnd~G 235 (423)
T 3ivs_A 208 PRQVYDLIRTLRGVVSCD-IECHFHNDTG 235 (423)
T ss_dssp HHHHHHHHHHHHHHCSSE-EEEEEBCTTS
T ss_pred HHHHHHHHHHHHhhcCCe-EEEEECCCCc
Confidence 7888888887765 4654 5888887444
No 78
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=63.41 E-value=41 Score=30.70 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEee-C-----C-CC--------------CCH-HHHHHHHHHHHHHHHHHHHcCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHI-G-----S-AA--------------TKF-AAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~-g-----s-~~--------------~~~-~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
.+++.++.+.+++.||++.++.+|. | . .. .+. +...+.++.+++.++.++++|.
T Consensus 50 ~~~~~~~~~~l~~~gl~i~~~~~~~~g~~~~~p~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~i~~A~~lGa 125 (340)
T 2zds_A 50 PSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGV 125 (340)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEEEHHHHHHHHCSCCSHHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEEeeccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556777778888999999999987 1 1 10 022 3345667888889999999987
No 79
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=61.19 E-value=22 Score=32.72 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHcCCe---EEEEEEeeC--CC--CCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 172 QEIVPLLEAAEASGLS---VVGVAFHIG--SA--ATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~---l~Glh~H~g--s~--~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
+++.++.+.+++.||+ +..+ .|.. .. ..+.+...+.++.+++.++.++++|.
T Consensus 65 ~~~~~l~~~l~~~gL~~~~i~~~-~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~ 123 (335)
T 2qw5_A 65 ENYTNLRHYLDSEGLENVKISTN-VGATRTFDPSSNYPEQRQEALEYLKSRVDITAALGG 123 (335)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEE-CCCCSSSCTTCSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCcceeEEE-eccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566666677788999 8874 3432 11 12455666778888899999999987
No 80
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=60.61 E-value=44 Score=31.37 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEcC---------------------HHHHHHHHh-CCC
Q 015304 41 VVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCAS---------------------RSEIEAVLA-LGV 97 (409)
Q Consensus 41 ~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS---------------------~~E~~~a~~-~G~ 97 (409)
.+.+.++++++.+|+..+. +|.-.+++-++.+.+.|+ .+.|+. +.|+..+.+ .++
T Consensus 147 ~~~~~i~~lr~~~~~~~vi--~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~i 224 (351)
T 2c6q_A 147 HFVEFVKDVRKRFPQHTIM--AGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKG 224 (351)
T ss_dssp HHHHHHHHHHHHCTTSEEE--EEEECSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCeEE--EEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCC
Confidence 3556667777766543332 344445666677777776 554532 123322221 232
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 98 SPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 98 ~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
.++..|...+..++..|+..|...+.+.+
T Consensus 225 ---pvIa~GGI~~g~di~kAlalGA~~V~vG~ 253 (351)
T 2c6q_A 225 ---HIISDGGCSCPGDVAKAFGAGADFVMLGG 253 (351)
T ss_dssp ---EEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred ---cEEEeCCCCCHHHHHHHHHcCCCceeccH
Confidence 46666777777777777777766444443
No 81
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=59.84 E-value=91 Score=27.41 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=62.8
Q ss_pred cEEE--EeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEE----EcCHHHHHHHHhCCCCCCcEEEe
Q 015304 33 PFYI--LDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFD----CASRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 33 P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~----vaS~~E~~~a~~~G~~~~~Ii~~ 105 (409)
+..+ +|.+.| +++++..|++...|-+...+. .....+...|+ ++. ..+..-++.+++.|.+ -.+++
T Consensus 145 ~vii~SF~~~~l----~~~~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~--v~~WT 217 (252)
T 3qvq_A 145 PLLFSSFNYFAL----VSAKALWPEIARGYNVSAIPS-AWQERLEHLDCAGLHIHQSFFDVQQVSDIKAAGYK--VLAFT 217 (252)
T ss_dssp CEEEEESCHHHH----HHHHHHCTTSCEEEECSSCCT-THHHHHHHHTCSEEEEEGGGCCHHHHHHHHHTTCE--EEEEC
T ss_pred CEEEEeCCHHHH----HHHHHHCCCCcEEEEEecCch-hHHHHHHHcCCeEEecchhhCCHHHHHHHHHCCCE--EEEEc
Confidence 4555 344443 456666787777777654332 23344555565 333 3566777788888862 33443
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhH
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKW 139 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~ 139 (409)
. -++++++.+++.||.-+.-|..+.+..+.+.
T Consensus 218 -v-n~~~~~~~l~~~GVdgIiTD~P~~~~~~l~~ 249 (252)
T 3qvq_A 218 -I-NDESLALKLYNQGLDAVFSDYPQKIQSAIDS 249 (252)
T ss_dssp -C-CCHHHHHHHHHTTCCEEEESSHHHHHHHHHH
T ss_pred -C-CCHHHHHHHHHcCCCEEEeCCHHHHHHHHHH
Confidence 3 4678999999999987788999988876543
No 82
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=59.35 E-value=79 Score=27.79 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=59.9
Q ss_pred ccccHHHHHHHHHhhcCCCCCccEEEEeHH--HHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcC---
Q 015304 11 TKEELTEFVRSTILKRQEFDEVPFYILDLG--VVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCAS--- 85 (409)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~t~P~~v~d~~--~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS--- 85 (409)
.-++..++.+.-+. -|= ++..+... .=.+.++++++.+|+..+-.- +=.+..=++.+.++|+.|-++-
T Consensus 44 ~~~~a~~~a~al~~----gGi-~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaG--TVlt~~~a~~Ai~AGA~fIvsP~~~ 116 (232)
T 4e38_A 44 NAEDIIPLGKVLAE----NGL-PAAEITFRSDAAVEAIRLLRQAQPEMLIGAG--TILNGEQALAAKEAGATFVVSPGFN 116 (232)
T ss_dssp SGGGHHHHHHHHHH----TTC-CEEEEETTSTTHHHHHHHHHHHCTTCEEEEE--CCCSHHHHHHHHHHTCSEEECSSCC
T ss_pred CHHHHHHHHHHHHH----CCC-CEEEEeCCCCCHHHHHHHHHHhCCCCEEeEC--CcCCHHHHHHHHHcCCCEEEeCCCC
Confidence 33555555555553 344 66665432 234677788888875433322 1224566777778888777643
Q ss_pred HHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEE
Q 015304 86 RSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 86 ~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~ 125 (409)
.+=++.+++.|+ .++-| +.+++|+..|++.|...+
T Consensus 117 ~~vi~~~~~~gi----~~ipG-v~TptEi~~A~~~Gad~v 151 (232)
T 4e38_A 117 PNTVRACQEIGI----DIVPG-VNNPSTVEAALEMGLTTL 151 (232)
T ss_dssp HHHHHHHHHHTC----EEECE-ECSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCC----CEEcC-CCCHHHHHHHHHcCCCEE
Confidence 223334455553 23344 358888888888888744
No 83
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=58.99 E-value=81 Score=29.79 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=12.8
Q ss_pred EEEeCCCCCHHHHHHHHHcCCcEEE
Q 015304 102 IIYANPCKPVSHIKYAANVGVNLTT 126 (409)
Q Consensus 102 Ii~~gp~k~~~~i~~a~~~gv~~~~ 126 (409)
|+-.|...+..++..|+..|...+.
T Consensus 214 VIA~GGI~~~~di~kala~GAd~V~ 238 (366)
T 4fo4_A 214 VIADGGIRFSGDISKAIAAGASCVM 238 (366)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4555555555555555555554333
No 84
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=58.54 E-value=1e+02 Score=28.27 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHHc--CCeEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEAS--GLSVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~~--~l~l~Glh~H~gs~ 198 (409)
|+++.++++.+++. ++. .|+|+|-..+
T Consensus 185 P~~v~~lv~~l~~~~~~~~-l~~H~Hnd~G 213 (307)
T 1ydo_A 185 PAQVETVLEALLARFPANQ-IALHFHDTRG 213 (307)
T ss_dssp HHHHHHHHHHHHTTSCGGG-EEEECBGGGS
T ss_pred HHHHHHHHHHHHHhCCCCe-EEEEECCCCc
Confidence 77888888877652 343 4788886443
No 85
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=58.20 E-value=48 Score=29.94 Aligned_cols=74 Identities=5% Similarity=-0.054 Sum_probs=46.2
Q ss_pred CCCccEEE--EeHHHHHHHHHHHHHhCCCcceEEecCcCCc--HHHHHHHHHcCCcEEEcCH---------H--------
Q 015304 29 FDEVPFYI--LDLGVVVTLYNQMISKLPMIHPHYAVKCNPE--PALLEALAALGSNFDCASR---------S-------- 87 (409)
Q Consensus 29 ~~t~P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKan~~--~~vl~~l~~~G~g~~vaS~---------~-------- 87 (409)
.+. |+-| ++.+.++.-++. +++..+.-.+-+-.. +.+++.+++.|+.+-+... .
T Consensus 77 ~~~-pisIDT~~~~v~~aal~a----~~Ga~iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~ 151 (271)
T 2yci_X 77 VDL-PCCLDSTNPDAIEAGLKV----HRGHAMINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAME 151 (271)
T ss_dssp CCC-CEEEECSCHHHHHHHHHH----CCSCCEEEEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHH
T ss_pred CCC-eEEEeCCCHHHHHHHHHh----CCCCCEEEECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHH
Confidence 355 7655 455555554443 345556666655444 7888888888986665443 1
Q ss_pred HHHHHHhCCCCCCcEEEeCC
Q 015304 88 EIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 88 E~~~a~~~G~~~~~Ii~~gp 107 (409)
-++.+.++|+++++|++...
T Consensus 152 ~~~~a~~~Gi~~~~IilDPg 171 (271)
T 2yci_X 152 LVANADAHGIPMTELYIDPL 171 (271)
T ss_dssp HHHHHHHTTCCGGGEEEECC
T ss_pred HHHHHHHCCCCcccEEEecC
Confidence 13456678998889998743
No 86
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=57.51 E-value=33 Score=31.18 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeC-CCCCCH----------HHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIG-SAATKF----------AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTN 240 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~g-s~~~~~----------~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~ 240 (409)
.++.++.+.+++.||++.++|+-.. ....++ +...+.++.+++.++.++++|. ++|.++++ +..
T Consensus 59 ~~~~~~~~~l~~~GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~---~~v~~~~~-~~~- 133 (303)
T 3l23_A 59 VPMMDFKKMAEDAGLKIISSHVNPVDTSISDPFKAMIFKYSKEVTPKIMEYWKATAADHAKLGC---KYLIQPMM-PTI- 133 (303)
T ss_dssp EEHHHHHHHHHHTTCEEEEEECCCBCTTCSSTTTTBCCSCCTTTHHHHHHHHHHHHHHHHHTTC---SEEEECSC-CCC-
T ss_pred CCHHHHHHHHHHcCCeEEEEecccccccccCcccccccccchhhHHHHHHHHHHHHHHHHHcCC---CEEEECCC-CCC-
Confidence 3456666677788999998875431 111111 1123446667778888999887 34555442 211
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcE--EEEcCCc
Q 015304 241 SNTKSFQEAASIIKEALHAYFPNELLPGSSLR--VISEPGR 279 (409)
Q Consensus 241 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~--l~~EpGR 279 (409)
.....++.+++.+++..... .. .+++ +.+|+=.
T Consensus 134 ~~~~~~~~~~~~l~~l~~~a-~~-----~Gv~~~l~~En~~ 168 (303)
T 3l23_A 134 TTHDEAKLVCDIFNQASDVI-KA-----EGIATGFGYHNHN 168 (303)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-HH-----TTCTTCEEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHH-HH-----CCCcceEEEccCc
Confidence 11223555555555443322 22 2577 7777643
No 87
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=56.69 E-value=49 Score=29.15 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=62.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEE----c-CHHHHHHHHhCCCCCCcEEEeC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDC----A-SRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~v----a-S~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+++.+.+ .+.++.+++..|++.+.|-+..... ..+.+.+.|+ ++.+ . +..-++.+++.|.. -.+++
T Consensus 129 ~v~i~Sf~--~~~l~~~~~~~p~~~~~~l~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~G~~--v~~wT- 201 (248)
T 1zcc_A 129 DTFYFSFS--EEMRQGLQSIAPEFRRMMTLDIAKS--PSLVGAVHHASIIEITPAQMRRPGIIEASRKAGLE--IMVYY- 201 (248)
T ss_dssp TEEEECSC--HHHHHHHHHHCTTSEEEEEHHHHSS--THHHHHTTCCSEEEECHHHHHSHHHHHHHHHHTCE--EEEEC-
T ss_pred CEEEEECC--HHHHHHHHHHCCCCcEEEEecCCcc--HHHHHHHcCCCEEEecHHHhCCHHHHHHHHHCCCE--EEEEC-
Confidence 55554433 2334566777787777666543322 2345556666 3333 2 55666778888862 33444
Q ss_pred CCCCHHHHHH-HHHcCCcEEEecCHHHHHHHHh
Q 015304 107 PCKPVSHIKY-AANVGVNLTTFDSVEELHKIRK 138 (409)
Q Consensus 107 p~k~~~~i~~-a~~~gv~~~~vds~~el~~i~~ 138 (409)
. .++++++. +++.|+.-+..|..+.+..+.+
T Consensus 202 v-n~~~~~~~~l~~~GvdgIiTD~p~~~~~~~~ 233 (248)
T 1zcc_A 202 G-GDDMAVHREIATSDVDYINLDRPDLFAAVRS 233 (248)
T ss_dssp C-CCCHHHHHHHHHSSCSEEEESCHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHcCCCEEEECCHHHHHHHHH
Confidence 3 35678888 9999998778899998887754
No 88
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=56.68 E-value=1e+02 Score=26.90 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=60.3
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc------CHHHHHHHHhCCCCCCcEEEe
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA------SRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va------S~~E~~~a~~~G~~~~~Ii~~ 105 (409)
...+.+.+. +.++++++..|++.+.|-+... .+ ..+.+.|+ ++... +..-+..+.+.|. .-.+++
T Consensus 132 ~v~~~Sf~~--~~l~~~~~~~p~~~~~~l~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~--~v~~WT 203 (238)
T 3no3_A 132 RTDYISFNM--DACKEFIRLCPKSEVSYLNGEL-SP---MELKELGFTGLDYHYKVLQSHPDWVKDCKVLGM--TSNVWT 203 (238)
T ss_dssp GEEEEESCH--HHHHHHHHHCTTSCEEECSSCS-CH---HHHHHTTCCEEEEEHHHHHHSTTHHHHHHHTTC--EEEEEC
T ss_pred CEEEEECCH--HHHHHHHHHCCCCeEEEEeCCC-CH---HHHHHCCCceEeccHHhhhCCHHHHHHHHHCCC--EEEEEC
Confidence 555543332 2345677777877776665332 33 23455676 45443 3344667788886 234454
Q ss_pred CCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHh
Q 015304 106 NPCKPVSHIKYAANVGVNLTTFDSVEELHKIRK 138 (409)
Q Consensus 106 gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~ 138 (409)
..++++++.+++.|+.-+.-|..+.+..+.+
T Consensus 204 --Vn~~~~~~~l~~~GVdgIiTD~P~~~~~~l~ 234 (238)
T 3no3_A 204 --VDDPKLMEEMIDMGVDFITTDLPEETQKILH 234 (238)
T ss_dssp --CCSHHHHHHHHHHTCSEEEESCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHcCCCEEECCCHHHHHHHHH
Confidence 2467899999999998778899998887643
No 89
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=56.12 E-value=96 Score=29.38 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHH---cCCeEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEA---SGLSVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~---~~l~l~Glh~H~gs~ 198 (409)
|.++.++++.+++ .++ ..++|+|--.+
T Consensus 172 P~~~~~lv~~l~~~~~~~~-~i~~H~Hnd~G 201 (382)
T 2ztj_A 172 PRQVYALVREVRRVVGPRV-DIEFHGHNDTG 201 (382)
T ss_dssp HHHHHHHHHHHHHHHTTTS-EEEEEEBCTTS
T ss_pred HHHHHHHHHHHHHhcCCCC-eEEEEeCCCcc
Confidence 7888888888755 344 46899997554
No 90
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=56.12 E-value=1.1e+02 Score=27.36 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=69.8
Q ss_pred CCccEEE--EeHHHHHHHHHHHHHhCCCcceEEecCcCCcH--HHHHHHHHcCCcEEEcCH-----------------HH
Q 015304 30 DEVPFYI--LDLGVVVTLYNQMISKLPMIHPHYAVKCNPEP--ALLEALAALGSNFDCASR-----------------SE 88 (409)
Q Consensus 30 ~t~P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~--~vl~~l~~~G~g~~vaS~-----------------~E 88 (409)
+. |+-| ++.+.++.-++. +++..+.-.+-+-..+ .+++.+++.|+.+-+... .-
T Consensus 69 ~~-pisIDT~~~~v~~aAl~a----~~Ga~iINdvs~~~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~ 143 (262)
T 1f6y_A 69 NL-TLCLDSTNIKAIEAGLKK----CKNRAMINSTNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMEL 143 (262)
T ss_dssp CS-EEEEECSCHHHHHHHHHH----CSSCEEEEEECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHH
T ss_pred CC-eEEEeCCCHHHHHHHHhh----CCCCCEEEECCCCcccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 44 6544 344444433332 2345566655544333 677777778875555432 11
Q ss_pred HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHhHC-CCCeEEEEEecCCCCCCCCCCCCCcCC
Q 015304 89 IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWH-PKCDLLIRIKPPDDSGAKHPLDSKYGV 167 (409)
Q Consensus 89 ~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~~~-~~~~v~lRv~~~~~~~~~~~~~srfGi 167 (409)
++.+.++|+++++|++....-+ +..+.. -+.++++.+..+.+.. |..++++=++ .-.||.
T Consensus 144 ~~~a~~~Gi~~~~IilDPg~g~-------~g~~~~-~~~~~l~~l~~l~~~~~pg~pvl~G~S-----------rksfg~ 204 (262)
T 1f6y_A 144 VAAADEFGLPMEDLYIDPLILP-------ANVAQD-HAPEVLKTLQQIKMLADPAPKTVLGLS-----------NVSQNC 204 (262)
T ss_dssp HHHHHHHTCCGGGEEEECCCCC-------TTTCTT-HHHHHHHHHHHHHTCCSSCCEEEEEGG-----------GGGTTC
T ss_pred HHHHHHCCCCcccEEEeCCCCc-------CCCChH-HHHHHHHHHHHHHHHhCCCCCEEEeec-----------CCcCCC
Confidence 3456677887778877644211 011111 1234455555555533 4566666443 135787
Q ss_pred CCCcccHHH-HHH-HHHHcCCeEEEEEEe
Q 015304 168 DHHPQEIVP-LLE-AAEASGLSVVGVAFH 194 (409)
Q Consensus 168 ~~~~~~~~~-~~~-~~~~~~l~l~Glh~H 194 (409)
+ ..+... .+- .+...++...-+|.|
T Consensus 205 ~--~~~~l~~t~~~~a~~~g~~~~iv~~~ 231 (262)
T 1f6y_A 205 Q--NRPLINRTFLAMAMACGLMSAIADAC 231 (262)
T ss_dssp S--SHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred C--HHHHHHHHHHHHHHHHhCCeEEECcC
Confidence 6 443322 222 223457777666555
No 91
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=55.49 E-value=86 Score=27.57 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=57.2
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCcC----CcHHHHHHHHHcCCc-EE----EcCHHHHHHHHhCCCCCCcEE
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCN----PEPALLEALAALGSN-FD----CASRSEIEAVLALGVSPDRII 103 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan----~~~~vl~~l~~~G~g-~~----vaS~~E~~~a~~~G~~~~~Ii 103 (409)
...+.+.+ .+.++++++..|.+.+.+..... ....+++.+...|+. +. ..+..-++.+.+.|.. -..
T Consensus 134 ~v~~~SF~--~~~l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~--V~~ 209 (250)
T 3ks6_A 134 RTTFSSFL--LASMDELWKATTRPRLWLVSPSVLQQLGPGAVIETAIAHSIHEIGVHIDTADAGLMAQVQAAGLD--FGC 209 (250)
T ss_dssp GEEEEESC--HHHHHHHHHHCCSCEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCHHHHHHHHHTTCE--EEE
T ss_pred CEEEEeCC--HHHHHHHHHHCCCCcEEEEecccccccchhHHHHHHHhcCCCEEecchhhCCHHHHHHHHHCCCE--EEE
Confidence 55554333 22344566667776655544311 011244445556652 22 2456667777788852 233
Q ss_pred EeCCCCCHHHHHHHHHcCCcEEEecCHHHHHHHHh
Q 015304 104 YANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRK 138 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~i~~ 138 (409)
++ . -++++++.+++.|+.-++-|..+.+..+.+
T Consensus 210 WT-v-n~~~~~~~l~~~GVDgIiTD~P~~~~~~~~ 242 (250)
T 3ks6_A 210 WA-A-HTPSQITKALDLGVKVFTTDRPTLAIALRT 242 (250)
T ss_dssp EC-C-CSHHHHHHHHHHTCSEEEESCHHHHHHHHH
T ss_pred Ee-C-CCHHHHHHHHHcCCCEEEcCCHHHHHHHHH
Confidence 43 3 367788888888887677788888777654
No 92
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=55.48 E-value=49 Score=30.66 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=60.7
Q ss_pred HHHHHhCC-CCCCcEEEeCCCC---CHHHHHHHHHcCCcEEEecCHHH------HHHHHhHCCC--CeEEEEEecCC-CC
Q 015304 89 IEAVLALG-VSPDRIIYANPCK---PVSHIKYAANVGVNLTTFDSVEE------LHKIRKWHPK--CDLLIRIKPPD-DS 155 (409)
Q Consensus 89 ~~~a~~~G-~~~~~Ii~~gp~k---~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~~~--~~v~lRv~~~~-~~ 155 (409)
+..+.+.| +++++++..|.-. ++++.+.+.+.|+..+..+.+.+ ++.+.+.... ..+.|-++... ++
T Consensus 172 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~~vylSiDiDvLDp 251 (322)
T 3m1r_A 172 FRRLLDEEIIEGQHLIQLGIREFSNSQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEILPVVQDKTDFIFISVDMDVLDQ 251 (322)
T ss_dssp HHHHHHTTSSCGGGEEEEEECTTSSCHHHHHHHHHTTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCT
T ss_pred HHHHHhccCCCCceEEEEeeCCCCCCHHHHHHHHHCCCEEEEHHHHhhcCHHHHHHHHHHHhhccCCeEEEEEeecccCh
Confidence 33444443 4567888887643 67889999999997666555443 2222222111 25777766522 22
Q ss_pred C-C-CCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 156 G-A-KHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 156 ~-~-~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
. . ...+....|++ ..|+.++++.+... -+++|+..-
T Consensus 252 a~aPgtgtp~pgGlt--~~e~~~il~~l~~~-~~vvg~Div 289 (322)
T 3m1r_A 252 SHAPGCPAIGPGGLY--TDELLEAVKYIAQQ-PNVAGIEIV 289 (322)
T ss_dssp TTCTTSSSCCSSCBC--HHHHHHHHHHHHTS-TTEEEEEEE
T ss_pred hhCCCCCCCCCCCCC--HHHHHHHHHHHhcc-CCEEEEEEE
Confidence 1 1 11123578999 88898888877543 356776554
No 93
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=55.10 E-value=1.7e+02 Score=28.95 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=56.3
Q ss_pred cEEEE-----eHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc----C-----------------
Q 015304 33 PFYIL-----DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA----S----------------- 85 (409)
Q Consensus 33 P~~v~-----d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va----S----------------- 85 (409)
...++ +...+.+.++++++.+|+..+. +|.-...+-++.+.+.|+ ++.|. |
T Consensus 270 d~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi--~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~ 347 (511)
T 3usb_A 270 DAIVLDTAHGHSQGVIDKVKEVRAKYPSLNII--AGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTA 347 (511)
T ss_dssp SEEEEECSCTTSHHHHHHHHHHHHHCTTSEEE--EEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHH
T ss_pred ceEEecccccchhhhhhHHHHHHHhCCCceEE--eeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHH
Confidence 55555 3455667788888888754333 343446677788888887 45440 1
Q ss_pred HHHHHHHHh-CCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 86 RSEIEAVLA-LGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 86 ~~E~~~a~~-~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
+.|+..+.+ .++ .|+..|...+..++..|+..|+..+.+.+
T Consensus 348 l~~v~~~~~~~~i---PVIa~GGI~~~~di~kala~GA~~V~vGs 389 (511)
T 3usb_A 348 VYDCATEARKHGI---PVIADGGIKYSGDMVKALAAGAHVVMLGS 389 (511)
T ss_dssp HHHHHHHHHTTTC---CEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred HHHHHHHHHhCCC---cEEEeCCCCCHHHHHHHHHhCchhheecH
Confidence 122222222 343 47777888888888888888877555554
No 94
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=54.99 E-value=1e+02 Score=28.02 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=76.7
Q ss_pred EeHHHHHHHHHHHHHh-CCCcceEEe--cCcCC----cHHHHHHHHHc-CC--cEEEcCHHHHHHHHhCCCCCCcEEEeC
Q 015304 37 LDLGVVVTLYNQMISK-LPMIHPHYA--VKCNP----EPALLEALAAL-GS--NFDCASRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~-~~~~~i~ya--vKan~----~~~vl~~l~~~-G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++.+...+-++++.+. ++-+++.+- -|.-+ ...+++.+.+. +. ..-+.....++.+.++|++ .|.+..
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~ag~~--~v~i~~ 101 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAK--EVVIFG 101 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEECCSHHHHHHHHHTTCS--EEEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEcCCHHhHHHHHHCCCC--EEEEEe
Confidence 5566666666666543 233444431 12111 23455555543 43 4446788889999999985 344433
Q ss_pred CCC----------CH--------HHHHHHHHcCCcE-EE----e-------cCHHHHHHHHhHCC--CCeEEEEEecCCC
Q 015304 107 PCK----------PV--------SHIKYAANVGVNL-TT----F-------DSVEELHKIRKWHP--KCDLLIRIKPPDD 154 (409)
Q Consensus 107 p~k----------~~--------~~i~~a~~~gv~~-~~----v-------ds~~el~~i~~~~~--~~~v~lRv~~~~~ 154 (409)
+.. +. +-+++|.++|..+ .. + .+.+++..+.+... .+. .|++. +
T Consensus 102 ~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~-~i~l~--D- 177 (298)
T 2cw6_A 102 AASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCY-EISLG--D- 177 (298)
T ss_dssp ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCS-EEEEE--E-
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCC-EEEec--C-
Confidence 321 11 2356666778752 11 1 15676666654321 122 23332 1
Q ss_pred CCCCCCCCCCcCCCCCcccHHHHHHHHHH-c-CCeEEEEEEeeCCC
Q 015304 155 SGAKHPLDSKYGVDHHPQEIVPLLEAAEA-S-GLSVVGVAFHIGSA 198 (409)
Q Consensus 155 ~~~~~~~~srfGi~~~~~~~~~~~~~~~~-~-~l~l~Glh~H~gs~ 198 (409)
| .|.. .|+++.++++.+++ . ++. .|+|+|-..+
T Consensus 178 ------T---~G~~-~P~~~~~lv~~l~~~~~~~~-i~~H~Hn~~G 212 (298)
T 2cw6_A 178 ------T---IGVG-TPGIMKDMLSAVMQEVPLAA-LAVHCHDTYG 212 (298)
T ss_dssp ------T---TSCC-CHHHHHHHHHHHHHHSCGGG-EEEEEBCTTS
T ss_pred ------C---CCCc-CHHHHHHHHHHHHHhCCCCe-EEEEECCCCc
Confidence 1 2332 18889999988865 2 344 5889997554
No 95
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=54.77 E-value=62 Score=28.01 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE------------EeCCCCCHHHHHHHHHcCCcEEEecC-----
Q 015304 68 PALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII------------YANPCKPVSHIKYAANVGVNLTTFDS----- 129 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii------------~~gp~k~~~~i~~a~~~gv~~~~vds----- 129 (409)
..+++.+.+.|+ ++.+.++..++.+++.- + -.++ +.+ .+.++++.+++.|+..+.++.
T Consensus 39 ~~~a~~~~~~G~~~i~~~~~~~i~~i~~~~-~-~p~i~~~~~~~~~~~~~i~--~~~~~i~~~~~~Gad~V~l~~~~~~~ 114 (234)
T 1yxy_A 39 PLMAKAAQEAGAVGIRANSVRDIKEIQAIT-D-LPIIGIIKKDYPPQEPFIT--ATMTEVDQLAALNIAVIAMDCTKRDR 114 (234)
T ss_dssp HHHHHHHHHHTCSEEEEESHHHHHHHHTTC-C-SCEEEECBCCCTTSCCCBS--CSHHHHHHHHTTTCSEEEEECCSSCC
T ss_pred HHHHHHHHHCCCcEeecCCHHHHHHHHHhC-C-CCEEeeEcCCCCccccccC--ChHHHHHHHHHcCCCEEEEcccccCC
Confidence 678888888998 88888999888887752 1 1232 111 256789999999998666632
Q ss_pred ------HHHHHHHHhHCCCCeEEEEE
Q 015304 130 ------VEELHKIRKWHPKCDLLIRI 149 (409)
Q Consensus 130 ------~~el~~i~~~~~~~~v~lRv 149 (409)
.+.++.+.+..+...+++.+
T Consensus 115 ~~~~~~~~~i~~i~~~~~~~~v~~~~ 140 (234)
T 1yxy_A 115 HDGLDIASFIRQVKEKYPNQLLMADI 140 (234)
T ss_dssp TTCCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred CCCccHHHHHHHHHHhCCCCeEEEeC
Confidence 34566666666555566544
No 96
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=54.14 E-value=42 Score=30.32 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeC--CC--CCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIG--SA--ATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~g--s~--~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
+++.++.+.+++.++++.+ |.-+. .. ..+.+...+.++.+++.++.++++|.
T Consensus 66 ~~~~~l~~~l~~~gl~i~~-~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~ 121 (309)
T 2hk0_A 66 AELATIRKSAKDNGIILTA-GIGPSKTKNLSSEDAAVRAAGKAFFERTLSNVAKLDI 121 (309)
T ss_dssp HHHHHHHHHHHHTTCEEEE-ECCCCSSSCSSCSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHcCCeEEE-ecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5566677777888999887 43211 11 12455566778888889999999986
No 97
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=53.93 E-value=80 Score=29.78 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=17.1
Q ss_pred cEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 101 RIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
.|+..|...+..++..|+..|...+.+.
T Consensus 201 PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 201 SIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4666666666666666666666544444
No 98
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=52.03 E-value=66 Score=28.21 Aligned_cols=90 Identities=20% Similarity=0.159 Sum_probs=53.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCC--C-CCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCCCCCCCHH
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSA--A-TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQ 247 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~--~-~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~~~~~~~~ 247 (409)
.+++.++.+.+++.++... .+|.... . .+.+.+...++.+++.++.++++|. +. +.+-.|.. . . +
T Consensus 48 ~~~~~~~~~~~~~~gl~~~--~~h~~~~~~l~s~~~~r~~~~~~~~~~i~~a~~lGa-~~--vv~h~g~~-~----~--~ 115 (270)
T 3aam_A 48 PAEVEAFRALREASGGLPA--VIHASYLVNLGAEGELWEKSVASLADDLEKAALLGV-EY--VVVHPGSG-R----P--E 115 (270)
T ss_dssp HHHHHHHHHHHHHTTCCCE--EEECCTTCCTTCSSTHHHHHHHHHHHHHHHHHHHTC-CE--EEECCCBS-C----H--H
T ss_pred HHHHHHHHHHHHHcCCceE--EEecCcccCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CE--EEECCCCC-C----H--H
Confidence 5667777777788888222 3443211 0 1445566778888888999999986 43 33333322 1 1 5
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCcEEEEcCC
Q 015304 248 EAASIIKEALHAYFP-NELLPGSSLRVISEPG 278 (409)
Q Consensus 248 ~~~~~i~~~l~~~~~-~~~~~~~~~~l~~EpG 278 (409)
.+.+.+++..... . . .++++.+|+-
T Consensus 116 ~~~~~l~~l~~~a-~~~-----~gv~l~lEn~ 141 (270)
T 3aam_A 116 RVKEGALKALRLA-GVR-----SRPVLLVENT 141 (270)
T ss_dssp HHHHHHHHHHHHH-TCC-----SSSEEEEECC
T ss_pred HHHHHHHHHHHhh-ccc-----CCCEEEEecC
Confidence 5666666555433 2 2 2578999975
No 99
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=51.96 E-value=39 Score=29.57 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=33.5
Q ss_pred cCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 165 YGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
++.+ ++++.++.+.+++.|+++.++|.... .. ++.+++.++.++++|.
T Consensus 56 ~~~~--~~~~~~~~~~l~~~gl~i~~~~~~~~---~~-------~~~~~~~i~~A~~lGa 103 (257)
T 3lmz_A 56 LNST--DEQIRAFHDKCAAHKVTGYAVGPIYM---KS-------EEEIDRAFDYAKRVGV 103 (257)
T ss_dssp TTCC--HHHHHHHHHHHHHTTCEEEEEEEEEE---CS-------HHHHHHHHHHHHHHTC
T ss_pred CCCC--HHHHHHHHHHHHHcCCeEEEEecccc---CC-------HHHHHHHHHHHHHhCC
Confidence 3445 67777888888889999999887754 12 3344556677777876
No 100
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=51.40 E-value=1e+02 Score=25.53 Aligned_cols=84 Identities=12% Similarity=0.177 Sum_probs=58.8
Q ss_pred cHHHHHHHHHc-CCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCc--EEEec---------------
Q 015304 67 EPALLEALAAL-GSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVN--LTTFD--------------- 128 (409)
Q Consensus 67 ~~~vl~~l~~~-G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~vd--------------- 128 (409)
...+++..... |+.+.+-|.+++....+.+.+..++++.- ++++++..+++.|+. .+++.
T Consensus 48 ~k~~lkmA~P~~gvk~~i~sve~ai~~~~~~~~~~~v~il~--k~p~d~~~lve~Gv~i~~vNvG~m~~~~gk~~i~~~V 125 (168)
T 3eye_A 48 QQKLMGITAETYGFGIRFFTIEKTINVIGKAAPHQKIFLIC--RTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKV 125 (168)
T ss_dssp GGHHHHHHHHHHTCEEEEECHHHHHHHGGGCCTTCCEEEEE--SSHHHHHHHHHTTCCCCEEEECCBCCCTTCEEEETTE
T ss_pred HHHHHHhcCCCCCCeEEEEEHHHHHHHHhcccCCceEEEEE--CCHHHHHHHHHcCCCCCEEEECCCcCCCCCEEEeccE
Confidence 35677777777 89999999999887776655445665543 567888888888763 34553
Q ss_pred --CHHHHHHHHhHC-CCCeEEEEEecC
Q 015304 129 --SVEELHKIRKWH-PKCDLLIRIKPP 152 (409)
Q Consensus 129 --s~~el~~i~~~~-~~~~v~lRv~~~ 152 (409)
+.+|++.+.++. ...++-+|.-|.
T Consensus 126 ~v~~ed~~~lk~L~~~Gv~v~~q~vP~ 152 (168)
T 3eye_A 126 YVDDQDLTDLRFIKQRGVNVFIQDVPG 152 (168)
T ss_dssp EECHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred eeCHHHHHHHHHHHHCCCEEEEEECcC
Confidence 477888887764 356777777663
No 101
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=50.63 E-value=40 Score=29.88 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeC----CCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIG----SAATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~g----s~~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
+++.++.+.+++.|+++.+++ .++ -...+.+...+.++.+++.++.++++|.
T Consensus 47 ~~~~~~~~~l~~~gl~~~~~~-~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~ 102 (290)
T 2qul_A 47 AKKRELKAVADDLGLTVMCCI-GLKSEYDFASPDKSVRDAGTEYVKRLLDDCHLLGA 102 (290)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-EECGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHcCCceEEec-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556677777788899998843 221 1123555566778888889999999987
No 102
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=50.45 E-value=11 Score=34.52 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCCeEEEEEEee-C-----CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecC
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHI-G-----SAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGG 234 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~-g-----s~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGG 234 (409)
++.++.+.+++.||++.++++.. + -...+++...+.++.+++.++.++++|. +.-.+..|+
T Consensus 71 ~~~~~~~~l~~~Gl~i~~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lGa-~~v~~~~g~ 137 (316)
T 3qxb_A 71 RAIAYAKAFRKAGLTIESTFGGLASYTYNHFLAPTLELQSLGYQHLKRAIDMTAAMEV-PATGMPFGS 137 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCHHHHTSCBTTCSSHHHHHHHHHHHHHHHHHHHHTTC-CEEEECCBB
T ss_pred HHHHHHHHHHHcCCeEEEeeccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEecCCC
Confidence 45566666777899998876431 1 1123566667778888999999999987 433334443
No 103
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=50.36 E-value=1.1e+02 Score=26.72 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=58.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEE----EcCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFD----CASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~----vaS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
..++.+.+. ..++.+++..|++.+.|-+..... .....+.+.++ ++. ..+..-++.+.+.|.. -.+++
T Consensus 146 ~vii~SF~~--~~l~~~~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~--v~~wT-- 218 (252)
T 2pz0_A 146 RVIISSFNH--YSLRDVKKMAPHLKIGLLYQCGLV-EPWHMALRMEAYSLHPFYFNIIPELVEGCKKNGVK--LFPWT-- 218 (252)
T ss_dssp TEEEEESBH--HHHHHHHHHCTTSEEEEEECSBCS-STHHHHHHTTCSEEEEBGGGCCHHHHHHHHHTTCE--ECCBC--
T ss_pred CEEEEeCCH--HHHHHHHHHCCCCCEEEEecCccc-cHHHHHHHcCCeEEecchhcCCHHHHHHHHHCCCE--EEEEC--
Confidence 555543332 234566666777666665554321 12344455555 333 2456677778888862 22233
Q ss_pred CCCHHHHHHHHHcCCcEEEecCHHHHHHHH
Q 015304 108 CKPVSHIKYAANVGVNLTTFDSVEELHKIR 137 (409)
Q Consensus 108 ~k~~~~i~~a~~~gv~~~~vds~~el~~i~ 137 (409)
.-++++++.+++.|+.-+..|..+.+..+.
T Consensus 219 vn~~~~~~~l~~~GvdgIiTD~P~~~~~~l 248 (252)
T 2pz0_A 219 VDRKEDMERMIKAGVDGIITDDPETLINLV 248 (252)
T ss_dssp CCSHHHHHHHHHHTCSEEEESCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEcCCHHHHHHHH
Confidence 346788888888888767788888776654
No 104
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=47.81 E-value=83 Score=28.48 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEeCC--CCCHHHHHHHHHcCCcEEE
Q 015304 68 PALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYANP--CKPVSHIKYAANVGVNLTT 126 (409)
Q Consensus 68 ~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp--~k~~~~i~~a~~~gv~~~~ 126 (409)
.++++.+.+.++ .+|......++.++++|. .|+..-. ...++.++.+.++|+.++.
T Consensus 70 ~pvi~~l~~~~~piSIDT~~~~va~aAl~aGa---~iINdvsg~~~d~~m~~~~a~~~~~vVl 129 (280)
T 1eye_A 70 IPVVKELAAQGITVSIDTMRADVARAALQNGA---QMVNDVSGGRADPAMGPLLAEADVPWVL 129 (280)
T ss_dssp HHHHHHHHHTTCCEEEECSCHHHHHHHHHTTC---CEEEETTTTSSCTTHHHHHHHHTCCEEE
T ss_pred HHHHHHhhcCCCEEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCCHHHHHHHHHhCCeEEE
Confidence 456666665565 899999999999999985 5776532 2356778888899987443
No 105
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=47.69 E-value=77 Score=29.83 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCcEEEcC------HHHHHHHHhCCCCCCcEEEeC--CCCCHHHHHHHHHcCCcEEEecC
Q 015304 68 PALLEALAALGSNFDCAS------RSEIEAVLALGVSPDRIIYAN--PCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 68 ~~vl~~l~~~G~g~~vaS------~~E~~~a~~~G~~~~~Ii~~g--p~k~~~~i~~a~~~gv~~~~vds 129 (409)
.+.+++..+.|+-+-+-+ .+.++.+++.|++++++++.+ -..+.+.++.+++.|+. +.+|.
T Consensus 196 rA~a~aa~etG~Pv~iHt~~~~~~~e~l~iL~eeG~~~~~vvi~H~~~~~d~~~~~~~l~~G~y-l~fD~ 264 (360)
T 3tn4_A 196 RAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCDNTDPDYHRKTLAYGVY-IAFDR 264 (360)
T ss_dssp HHHHHHHHHHCCEEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHHTTTCE-EEECC
T ss_pred HHHHHHHHHhCCcEEEEcCcccCCHHHHHHHHHcCCCCCceEEEcCCCCCCHHHHHHHHHcCCE-EEEcc
Confidence 445555566787666544 256778889999999998865 34567888889999995 77774
No 106
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=47.04 E-value=60 Score=29.95 Aligned_cols=104 Identities=16% Similarity=0.258 Sum_probs=57.1
Q ss_pred ecCHHHHHHHHhHCCCCe-EEEEEecCCCCCCCCCCCCCcCCCCCcccHHH----HHHHHHHcCCeEEEEEEeeCCCC--
Q 015304 127 FDSVEELHKIRKWHPKCD-LLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVP----LLEAAEASGLSVVGVAFHIGSAA-- 199 (409)
Q Consensus 127 vds~~el~~i~~~~~~~~-v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~----~~~~~~~~~l~l~Glh~H~gs~~-- 199 (409)
..|+..+.++.+...+.+ -..|++....+-. +.-.+|.+. .+.+.+ +=+.+++.++++ .+|.|...
T Consensus 56 ~~Nl~~l~~il~~n~~~~I~~yRiSS~l~P~~---thp~~~~~~-~~~~~~~l~~iG~~a~~~~iRL---S~HPgqF~vL 128 (310)
T 3tc3_A 56 SSNLLCLKNILEWNLKHEILFFRISSNTIPLA---SHPKFHVNW-KDKLSHILGDIGDFIKENSIRI---SMHPGQYVVL 128 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECCTTSSTTT---TSTTCCCCH-HHHTHHHHHHHHHHHHHTTCEE---EECCCTTCCT
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeCcccCCCc---cccccccch-HHHHHHHHHHHHHHHHHcCcEE---EecCCCCccC
Confidence 345555666655432222 3679986332211 112345441 122333 333456678875 59998753
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCC
Q 015304 200 --TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFS 237 (409)
Q Consensus 200 --~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~ 237 (409)
.+++.....++.+..-.+.++.+|.+..-.|++||.++
T Consensus 129 ~S~~~~Vv~~SI~dL~yHa~~ld~mG~~~~i~IH~Gg~yG 168 (310)
T 3tc3_A 129 NSVREEVVRSSIMELKYHADLLDSMGIEGKIQIHVGSSMN 168 (310)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCcCceeecCCcCC
Confidence 35566667777776666677777872233578888765
No 107
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=44.42 E-value=1.5e+02 Score=26.79 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHH--cCC--eEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEA--SGL--SVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~--~~l--~l~Glh~H~gs~ 198 (409)
|.++.++++.+++ +++ -..|+|+|--.+
T Consensus 178 P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~G 209 (293)
T 3ewb_X 178 PTEFGQLFQDLRREIKQFDDIIFASHCHDDLG 209 (293)
T ss_dssp HHHHHHHHHHHHHHCTTGGGSEEEEECBCTTS
T ss_pred HHHHHHHHHHHHHhcCCccCceEEEEeCCCcC
Confidence 7888888888765 233 256899997544
No 108
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=44.18 E-value=1.1e+02 Score=29.04 Aligned_cols=128 Identities=16% Similarity=0.273 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCC-cEEEcCH----HHH---HHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEE-ecC---------
Q 015304 68 PALLEALAALGS-NFDCASR----SEI---EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTT-FDS--------- 129 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~----~E~---~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~-vds--------- 129 (409)
..+++.|.+.|+ .+|+.++ .+. +.+.+.+.+. +++...- -..++++.|++.|+..+. +.+
T Consensus 28 ~~ia~~L~~~Gv~~IE~g~p~~~~~~~~~~~~i~~~~~~~-~v~~~~r-~~~~di~~a~~~g~~~v~i~~~~s~~~~~~~ 105 (382)
T 2ztj_A 28 VEIAKALDEFGIEYIEVTTPVASPQSRKDAEVLASLGLKA-KVVTHIQ-CRLDAAKVAVETGVQGIDLLFGTSKYLRAPH 105 (382)
T ss_dssp HHHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHTSCCSS-EEEEEEE-SCHHHHHHHHHTTCSEEEEEECC--------
T ss_pred HHHHHHHHHcCcCEEEEcCCcCCHHHHHHHHHHHhcCCCc-EEEEEcc-cChhhHHHHHHcCCCEEEEEeccCHHHHHHh
Confidence 457777777777 6777543 333 2333445442 3332211 135678888888886442 332
Q ss_pred ---HHH-HHHHH---hHCCCCe--EEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCC
Q 015304 130 ---VEE-LHKIR---KWHPKCD--LLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAAT 200 (409)
Q Consensus 130 ---~~e-l~~i~---~~~~~~~--v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~ 200 (409)
.+| ++.+. +.+++.. +-++++..+ . +-.+ ++.+.++++.+.+. .....|-=..|...
T Consensus 106 ~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed--------~--~~~~--~~~~~~~~~~~~~~-a~~i~l~DT~G~~~- 171 (382)
T 2ztj_A 106 GRDIPRIIEEAKEVIAYIREAAPHVEVRFSAED--------T--FRSE--EQDLLAVYEAVAPY-VDRVGLADTVGVAT- 171 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETT--------T--TTSC--HHHHHHHHHHHGGG-CSEEEEEETTSCCC-
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEe--------C--CCCC--HHHHHHHHHHHHHh-cCEEEecCCCCCCC-
Confidence 222 33332 2222222 456666521 1 2234 67788888887777 78888888899753
Q ss_pred CHHHHHHHHHHH
Q 015304 201 KFAAYRGAIAAA 212 (409)
Q Consensus 201 ~~~~~~~~i~~~ 212 (409)
+..+.+.++.+
T Consensus 172 -P~~~~~lv~~l 182 (382)
T 2ztj_A 172 -PRQVYALVREV 182 (382)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 55554444443
No 109
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=43.74 E-value=1.4e+02 Score=24.90 Aligned_cols=85 Identities=12% Similarity=0.167 Sum_probs=43.0
Q ss_pred eHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHHc---CC--cE-EEcCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 38 DLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAAL---GS--NF-DCASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 38 d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~~---G~--g~-~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
|.+...+-.+.+.+. ++-+ ..++.+......++.+++. +. ++ .|.+..|++.+.++|.+ ++ .+|..+
T Consensus 20 ~~~~~~~~~~~~~~~G~~~i--ev~~~~~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad---~i-v~~~~~ 93 (205)
T 1wa3_A 20 SVEEAKEKALAVFEGGVHLI--EITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAE---FI-VSPHLD 93 (205)
T ss_dssp SHHHHHHHHHHHHHTTCCEE--EEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCS---EE-ECSSCC
T ss_pred CHHHHHHHHHHHHHCCCCEE--EEeCCChhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCC---EE-EcCCCC
Confidence 445555555555442 2212 2233443333445555543 23 33 23578888888888752 34 344444
Q ss_pred --------------------HHHHHHHHHcCCcEEEec
Q 015304 111 --------------------VSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 111 --------------------~~~i~~a~~~gv~~~~vd 128 (409)
++++..|++.|+..+.+.
T Consensus 94 ~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~ 131 (205)
T 1wa3_A 94 EEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLF 131 (205)
T ss_dssp HHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 566666666666544433
No 110
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=43.69 E-value=90 Score=28.07 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=40.8
Q ss_pred cHHHHHHHHHc-CC--cEEEcCHHHHHHHHhC--CCCCCcEEEeCCCCC---HHHHHHHHHcCCcEEEe
Q 015304 67 EPALLEALAAL-GS--NFDCASRSEIEAVLAL--GVSPDRIIYANPCKP---VSHIKYAANVGVNLTTF 127 (409)
Q Consensus 67 ~~~vl~~l~~~-G~--g~~vaS~~E~~~a~~~--G~~~~~Ii~~gp~k~---~~~i~~a~~~gv~~~~v 127 (409)
..++++.+.+. ++ .+|.....-++.++++ | ..|+..-.... ++.++.+.++|+.++..
T Consensus 66 v~~vi~~l~~~~~~pisIDT~~~~v~~aal~a~~G---a~iINdvs~~~d~~~~~~~~~a~~~~~vv~m 131 (271)
T 2yci_X 66 MEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVHRG---HAMINSTSADQWKMDIFFPMAKKYEAAIIGL 131 (271)
T ss_dssp HHHHHHHHHHHCCCCEEEECSCHHHHHHHHHHCCS---CCEEEEECSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHhCCC---CCEEEECCCCccccHHHHHHHHHcCCCEEEE
Confidence 46677777765 65 8999999999999998 6 45776433332 45666777899874443
No 111
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=43.56 E-value=1.1e+02 Score=29.10 Aligned_cols=16 Identities=6% Similarity=0.333 Sum_probs=8.6
Q ss_pred EEcCHHHHHHHHhCCC
Q 015304 82 DCASRSEIEAVLALGV 97 (409)
Q Consensus 82 ~vaS~~E~~~a~~~G~ 97 (409)
.+.+..+++.+.++|+
T Consensus 201 ~v~~~~~a~~a~~~Ga 216 (404)
T 1eep_A 201 NIVTKEAALDLISVGA 216 (404)
T ss_dssp EECSHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHhcCC
Confidence 3455555555555554
No 112
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=43.50 E-value=1.7e+02 Score=28.69 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=57.5
Q ss_pred cEEEEeH-----HHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc---------------------C
Q 015304 33 PFYILDL-----GVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA---------------------S 85 (409)
Q Consensus 33 P~~v~d~-----~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va---------------------S 85 (409)
...++|. ..+.+.++++++.+|+..+.. +.-.....++.+.++|+ .+.|. .
T Consensus 245 d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~--g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~ 322 (496)
T 4fxs_A 245 DVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG--GNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITA 322 (496)
T ss_dssp SEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE--EEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHH
T ss_pred ceEEeccccccchHHHHHHHHHHHHCCCceEEE--cccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHH
Confidence 5555643 356677888888887644432 22245677788888888 55542 0
Q ss_pred HHHHHHHH-hCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCH
Q 015304 86 RSEIEAVL-ALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130 (409)
Q Consensus 86 ~~E~~~a~-~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~ 130 (409)
..|+..+. +.++ +|+-.|...+.+++..|+..|+..+.+.+.
T Consensus 323 i~~v~~~~~~~~i---PVIa~GGI~~~~di~kala~GAd~V~iGs~ 365 (496)
T 4fxs_A 323 IADAAGVANEYGI---PVIADGGIRFSGDISKAIAAGASCVMVGSM 365 (496)
T ss_dssp HHHHHHHHGGGTC---CEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred HHHHHHHhccCCC---eEEEeCCCCCHHHHHHHHHcCCCeEEecHH
Confidence 12333222 2343 477788888888888888888875555543
No 113
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=43.45 E-value=1.1e+02 Score=27.58 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=57.9
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHcCCcEEEecCHHH------HHHHHhHCCCCeEEEEEecCC-CCCC--CCCCCCCcC
Q 015304 97 VSPDRIIYANPC-KPVSHIKYAANVGVNLTTFDSVEE------LHKIRKWHPKCDLLIRIKPPD-DSGA--KHPLDSKYG 166 (409)
Q Consensus 97 ~~~~~Ii~~gp~-k~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~~~~~v~lRv~~~~-~~~~--~~~~~srfG 166 (409)
+++++++..|.- .++++.+.+.+.|+..+..+.+.+ ++.+.+..+...+.|-++... ++.. ...+....|
T Consensus 157 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~l~~~~vylSiDiDvlDp~~aPgtgtp~pgG 236 (290)
T 2ef5_A 157 VDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGG 236 (290)
T ss_dssp CCGGGEEEEEECBCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHTTTSCEEEEEEGGGBCTTTCCCCSSCCSSC
T ss_pred cCcccEEEEECCCCCHHHHHHHHHcCCeEEEHHHHHhcCHHHHHHHHHHhcCCCcEEEEEccCCCChhhCCCCCCCCCCC
Confidence 556788877652 356788888889997666555443 233333333345777776521 2211 112235889
Q ss_pred CCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 167 VDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 167 i~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
++ ..|+.++++.+... .+++|+..=
T Consensus 237 lt--~~e~~~~l~~l~~~-~~vvg~Div 261 (290)
T 2ef5_A 237 LT--YREAHLLMEILAES-GRVQSLDLV 261 (290)
T ss_dssp BC--HHHHHHHHHHHHHH-TCEEEEEEE
T ss_pred CC--HHHHHHHHHHHHcC-CCEEEEEEE
Confidence 99 89999998887543 357776554
No 114
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=43.00 E-value=27 Score=32.21 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=57.8
Q ss_pred HHHHHhCC-CCCCcEEEeCCC---CCHHHHHHHHHcCCcEEEecCHHH------HHHHHhHCCCCeEEEEEecCC-CCC-
Q 015304 89 IEAVLALG-VSPDRIIYANPC---KPVSHIKYAANVGVNLTTFDSVEE------LHKIRKWHPKCDLLIRIKPPD-DSG- 156 (409)
Q Consensus 89 ~~~a~~~G-~~~~~Ii~~gp~---k~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~~~~~v~lRv~~~~-~~~- 156 (409)
+..+.+.| +++++++..|.- .++++.+.+.+.|+..++.+.+.+ ++.+.+......+.|-++... ++.
T Consensus 164 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~ 243 (313)
T 1gq6_A 164 FRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAF 243 (313)
T ss_dssp HHHHHHTTSEEEEEEEEEEECCC------CHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGBCTTT
T ss_pred HHHhhhccCCCCCcEEEEEecCCCCCHHHHHHHHHcCCEEEEHHHHhhcCHHHHHHHHHHHcCCCeEEEEEeecCcCccc
Confidence 44455554 455788888764 356788888899997655554432 233332222345777776521 221
Q ss_pred C-CCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 157 A-KHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 157 ~-~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
. ...+....|++ ..|+.++++.+. +.+++|+..=
T Consensus 244 aPgtgtp~pgGlt--~~e~~~~l~~l~--~~~vvg~Div 278 (313)
T 1gq6_A 244 APGTGTPAPGGLL--SREVLALLRCVG--DLKPVGFDVM 278 (313)
T ss_dssp CCSBSSCCSSCBC--HHHHHHHGGGGG--GSEEEEEEEE
T ss_pred CCCCCCCCCCCCC--HHHHHHHHHHHc--cCCeEEEEEE
Confidence 1 11233678999 888888887663 3578887655
No 115
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=42.41 E-value=1.9e+02 Score=25.90 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=70.2
Q ss_pred EeeccccHHHHHHHHHhhcC-CCCCccEEE---E--------eHHHHHHHHHHHHHhCCCcceE-EecCcCCcHHHHHHH
Q 015304 8 TVVTKEELTEFVRSTILKRQ-EFDEVPFYI---L--------DLGVVVTLYNQMISKLPMIHPH-YAVKCNPEPALLEAL 74 (409)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~t~P~~v---~--------d~~~l~~n~~~~~~~~~~~~i~-yavKan~~~~vl~~l 74 (409)
|-++|.+.+|-|+.--...+ -.++ .|+= + |.....+..+.+.+ .+++++ | ++.++.+++.+
T Consensus 79 NTag~~ta~eAv~~a~lare~~~~~-~~iKlEv~~d~~~llpD~~~tv~aa~~L~~--~Gf~Vlpy---~~dd~~~akrl 152 (265)
T 1wv2_A 79 NTAGCYDAVEAVRTCRLARELLDGH-NLVKLEVLADQKTLFPNVVETLKAAEQLVK--DGFDVMVY---TSDDPIIARQL 152 (265)
T ss_dssp ECTTCCSHHHHHHHHHHHHTTTTSC-CEEEECCBSCTTTCCBCHHHHHHHHHHHHT--TTCEEEEE---ECSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-CeEEEEeecCccccCcCHHHHHHHHHHHHH--CCCEEEEE---eCCCHHHHHHH
Confidence 44678888888863333333 4566 6532 2 33344444444432 356665 4 56779999999
Q ss_pred HHcCC-cEEE-----------cCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 75 AALGS-NFDC-----------ASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 75 ~~~G~-g~~v-----------aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
.+.|+ -+.. .+.+=++.+++.. + -.++..|...++++...|++.|+.-+.|.|
T Consensus 153 ~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~-~-vPVI~eGGI~TPsDAa~AmeLGAdgVlVgS 217 (265)
T 1wv2_A 153 AEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEA-K-VPVLVDAGVGTASDAAIAMELGCEAVLMNT 217 (265)
T ss_dssp HHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHC-S-SCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred HHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhcC-C-CCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 99887 3333 3444445555531 2 347778888899999999999887544544
No 116
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=42.39 E-value=2e+02 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=24.4
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
-++|-|.+|++.|+++|. +-|.+.+. ++++++.+++
T Consensus 235 eVEVdtldea~eAl~aGa--D~I~LDn~--~~~~l~~av~ 270 (320)
T 3paj_A 235 EVETETLAELEEAISAGA--DIIMLDNF--SLEMMREAVK 270 (320)
T ss_dssp EEEESSHHHHHHHHHTTC--SEEEEESC--CHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHcCC--CEEEECCC--CHHHHHHHHH
Confidence 577888888888888775 44555443 5677777654
No 117
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=42.08 E-value=54 Score=30.54 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=19.9
Q ss_pred cccHHHHHHHHHH-c-CCeEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEA-S-GLSVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~-~l~l~Glh~H~gs~ 198 (409)
|+++.++++.+++ . ++. .|+|+|--.+
T Consensus 197 P~~v~~lv~~l~~~~p~~~-i~~H~Hnd~G 225 (337)
T 3ble_A 197 PEETFQGVDSLIQKYPDIH-FEFHGHNDYD 225 (337)
T ss_dssp HHHHHHHHHHHHHHCTTSC-EEEECBCTTS
T ss_pred HHHHHHHHHHHHHhcCCCe-EEEEecCCcc
Confidence 7889999988865 3 454 5899997544
No 118
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=41.77 E-value=2.6e+02 Score=27.33 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=53.4
Q ss_pred cEEEEe-----HHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEc----C-----------------
Q 015304 33 PFYILD-----LGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCA----S----------------- 85 (409)
Q Consensus 33 P~~v~d-----~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~va----S----------------- 85 (409)
.+.++| ...+.+.++++++.+|+..+.. +.-.+++-++.+.++|+ .+.|. |
T Consensus 243 d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~--g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~ 320 (490)
T 4avf_A 243 DVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG--GNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISA 320 (490)
T ss_dssp SEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE--EEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHH
T ss_pred ceEEecccCCcchhHHHHHHHHHHHCCCceEEE--eeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHH
Confidence 555554 3456677778887776543322 32345666777777887 45441 1
Q ss_pred HHHHHHHH-hCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 86 RSEIEAVL-ALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 86 ~~E~~~a~-~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
..|+..+. +.++ +|+-.|...+.+++..|+..|+..+.+.+
T Consensus 321 l~~v~~~~~~~~i---PVIa~GGI~~~~di~kal~~GAd~V~vGs 362 (490)
T 4avf_A 321 IANVAAALEGTGV---PLIADGGIRFSGDLAKAMVAGAYCVMMGS 362 (490)
T ss_dssp HHHHHHHHTTTTC---CEEEESCCCSHHHHHHHHHHTCSEEEECT
T ss_pred HHHHHHHhccCCC---cEEEeCCCCCHHHHHHHHHcCCCeeeecH
Confidence 12222222 1232 47777777777888887777776555554
No 119
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=41.55 E-value=2.6e+02 Score=27.34 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEcC---------------------HHHHHHHHhC-C
Q 015304 40 GVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCAS---------------------RSEIEAVLAL-G 96 (409)
Q Consensus 40 ~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS---------------------~~E~~~a~~~-G 96 (409)
....+.++++++.+|+..+. +|.-.+...++.+.+.|+ ++.|.. ..++..+.+. +
T Consensus 281 ~~~~~~i~~i~~~~~~~pvi--~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ 358 (514)
T 1jcn_A 281 VYQIAMVHYIKQKYPHLQVI--GGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFG 358 (514)
T ss_dssp HHHHHHHHHHHHHCTTCEEE--EEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGT
T ss_pred hhHHHHHHHHHHhCCCCceE--ecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCC
Confidence 34456677777777544332 243355666777777777 555521 1233333332 3
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 97 VSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 97 ~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
+ .|+-.|...+..++..|+..|+..+.+.+
T Consensus 359 i---pVia~GGI~~~~di~kala~GAd~V~iG~ 388 (514)
T 1jcn_A 359 V---PIIADGGIQTVGHVVKALALGASTVMMGS 388 (514)
T ss_dssp C---CEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred C---CEEEECCCCCHHHHHHHHHcCCCeeeECH
Confidence 2 46667777777777777777776444443
No 120
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=40.32 E-value=93 Score=29.33 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=68.1
Q ss_pred eHHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCCcEE--EcCHHHHHHHHhCCCCCCcEEEeCCC
Q 015304 38 DLGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGSNFD--CASRSEIEAVLALGVSPDRIIYANPC 108 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~g~~--vaS~~E~~~a~~~G~~~~~Ii~~gp~ 108 (409)
+.+.-.+.++++|++++ ++.+ .+++|. ...+++.|.+.|+.+| +....++..+++. .+ -+|......
T Consensus 171 ~~~~d~~~v~avR~a~g~~~~l--~vDan~~~~~~~a~~~~~~l~~~~i~iEqP~~~~~~~~~l~~~-~~-iPIa~dE~~ 246 (378)
T 3eez_A 171 DVERDIARIRDVEDIREPGEIV--LYDVNRGWTRQQALRVMRATEDLHVMFEQPGETLDDIAAIRPL-HS-APVSVDECL 246 (378)
T ss_dssp CHHHHHHHHHHHTTSCCTTCEE--EEECTTCCCHHHHHHHHHHTGGGTCCEECCSSSHHHHHHTGGG-CC-CCEEECTTC
T ss_pred CHHHHHHHHHHHHHHcCCCceE--EEECCCCCCHHHHHHHHHHhccCCeEEecCCCCHHHHHHHHhh-CC-CCEEECCCC
Confidence 35566777888888885 4544 578886 2356666666776555 3455555555443 22 357878888
Q ss_pred CCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCCeE
Q 015304 109 KPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKCDL 145 (409)
Q Consensus 109 k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~~v 145 (409)
.+.++++.+++.+ +..+++| .+.+..++.+.+....+
T Consensus 247 ~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~ 289 (378)
T 3eez_A 247 VTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGI 289 (378)
T ss_dssp CSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCC
Confidence 8888999888766 4556665 67777777776544333
No 121
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=40.24 E-value=77 Score=27.86 Aligned_cols=53 Identities=8% Similarity=0.178 Sum_probs=24.0
Q ss_pred EcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhH
Q 015304 83 CASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL-TTFDSVEELHKIRKW 139 (409)
Q Consensus 83 vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~-~~vds~~el~~i~~~ 139 (409)
|-+..+++.+.++|. +++.+ |..+++-++.+.++|+.+ .-+.+.+|+.+-.+.
T Consensus 93 Vlt~~~a~~Ai~AGA---~fIvs-P~~~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~ 146 (232)
T 4e38_A 93 ILNGEQALAAKEAGA---TFVVS-PGFNPNTVRACQEIGIDIVPGVNNPSTVEAALEM 146 (232)
T ss_dssp CCSHHHHHHHHHHTC---SEEEC-SSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCC---CEEEe-CCCCHHHHHHHHHcCCCEEcCCCCHHHHHHHHHc
Confidence 344555555555553 23332 334444455555555432 134455555544443
No 122
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=40.14 E-value=1.7e+02 Score=24.85 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCcceEEecCcCCcH-HHHHHHHHcCC-cEEEc--CHHH-HH----HHHhCCCCCCcEE-EeCCCCCHH
Q 015304 43 VTLYNQMISKLPMIHPHYAVKCNPEP-ALLEALAALGS-NFDCA--SRSE-IE----AVLALGVSPDRII-YANPCKPVS 112 (409)
Q Consensus 43 ~~n~~~~~~~~~~~~i~yavKan~~~-~vl~~l~~~G~-g~~va--S~~E-~~----~a~~~G~~~~~Ii-~~gp~k~~~ 112 (409)
.+-++++++.+++..++.-+|-+..+ ..++.+.++|+ ++-+- +..| ++ .+++.|.+ .++ +.+|. |.+
T Consensus 47 ~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~--~~~d~l~~~-T~~ 123 (218)
T 3jr2_A 47 MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGE--IQIEIYGNW-TMQ 123 (218)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCE--EEEECCSSC-CHH
T ss_pred HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCc--cceeeeecC-CHH
Confidence 34577888887776677777776543 35788888998 55443 2222 22 24456753 343 66774 678
Q ss_pred HHHHHHHcCCcEEEe------------cCHHHHHHHHhHC
Q 015304 113 HIKYAANVGVNLTTF------------DSVEELHKIRKWH 140 (409)
Q Consensus 113 ~i~~a~~~gv~~~~v------------ds~~el~~i~~~~ 140 (409)
+++.+.+.|+..+.+ .+.++++++.+..
T Consensus 124 ~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~ 163 (218)
T 3jr2_A 124 DAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLS 163 (218)
T ss_dssp HHHHHHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCccceeeeeccccccCCCcCCHHHHHHHHHHh
Confidence 888888888864332 2567777776653
No 123
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=39.44 E-value=1.4e+02 Score=24.22 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=11.0
Q ss_pred cHHHHHHHHHcCCcEEEcC
Q 015304 67 EPALLEALAALGSNFDCAS 85 (409)
Q Consensus 67 ~~~vl~~l~~~G~g~~vaS 85 (409)
..++++.|.+.|..+.++|
T Consensus 73 ~~e~L~~L~~~G~~v~ivT 91 (187)
T 2wm8_A 73 VPEVLKRLQSLGVPGAAAS 91 (187)
T ss_dssp HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHCCceEEEEe
Confidence 3456666666676544443
No 124
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=39.32 E-value=2.6e+02 Score=27.22 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=11.1
Q ss_pred EEEeCCCCCHHHHHHHHHcCCc
Q 015304 102 IIYANPCKPVSHIKYAANVGVN 123 (409)
Q Consensus 102 Ii~~gp~k~~~~i~~a~~~gv~ 123 (409)
|+..|...+..++..|+..|+.
T Consensus 343 via~GGI~~~~di~kala~GAd 364 (494)
T 1vrd_A 343 IIADGGIRYSGDIVKALAAGAE 364 (494)
T ss_dssp EEEESCCCSHHHHHHHHHTTCS
T ss_pred EEEECCcCCHHHHHHHHHcCCC
Confidence 4444544555555555555544
No 125
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=37.94 E-value=16 Score=32.04 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=11.6
Q ss_pred cHHHHHHHHHcCCcEEEcC
Q 015304 67 EPALLEALAALGSNFDCAS 85 (409)
Q Consensus 67 ~~~vl~~l~~~G~g~~vaS 85 (409)
...+++.|.+.|..+.++|
T Consensus 121 ~~~ll~~Lk~~g~~i~i~~ 139 (250)
T 4gib_A 121 IESLLIDVKSNNIKIGLSS 139 (250)
T ss_dssp HHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHhccccccccc
Confidence 3466667777777555543
No 126
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=37.91 E-value=89 Score=27.29 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=39.1
Q ss_pred cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE------------EeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 67 EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII------------YANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 67 ~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii------------~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
...+++...+.|+ ++.+.|..+++.+++. ++ -+|+ |..| +.++++.+++.|+..+.++
T Consensus 38 ~~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~-v~-~Pvig~~k~d~~~~~~~I~~--~~~~i~~~~~~Gad~V~l~ 108 (232)
T 3igs_A 38 VAAMALAAEQAGAVAVRIEGIDNLRMTRSL-VS-VPIIGIIKRDLDESPVRITP--FLDDVDALAQAGAAIIAVD 108 (232)
T ss_dssp HHHHHHHHHHTTCSEEEEESHHHHHHHHTT-CC-SCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHCCCeEEEECCHHHHHHHHHh-cC-CCEEEEEeecCCCcceEeCc--cHHHHHHHHHcCCCEEEEC
Confidence 3567777777887 8899999998888875 22 1232 2223 4567888888888765554
No 127
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=37.54 E-value=1.5e+02 Score=25.74 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=22.0
Q ss_pred EEEeCCCCCHHHHHHHHHcCCc--EEEecCHHHHHHHHhHC
Q 015304 102 IIYANPCKPVSHIKYAANVGVN--LTTFDSVEELHKIRKWH 140 (409)
Q Consensus 102 Ii~~gp~k~~~~i~~a~~~gv~--~~~vds~~el~~i~~~~ 140 (409)
|.......+++.++.+-+.|+. ..++++.++++++.+..
T Consensus 188 i~~~~~~~~~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~G 228 (247)
T 2otd_A 188 IHLNHKLLDKARVMQLKDAGLRILVYTVNKPQHAAELLRWG 228 (247)
T ss_dssp EEEEGGGCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHT
T ss_pred EecChHhCCHHHHHHHHHCCCEEEEEccCCHHHHHHHHHcC
Confidence 3333333456666666666654 23666666666665553
No 128
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=37.37 E-value=1.6e+02 Score=26.27 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=46.5
Q ss_pred eEEecCcCC---cHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEeCCC-----CCHHHHHHH---HHcCCcE
Q 015304 58 PHYAVKCNP---EPALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYANPC-----KPVSHIKYA---ANVGVNL 124 (409)
Q Consensus 58 i~yavKan~---~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~-----k~~~~i~~a---~~~gv~~ 124 (409)
+.--+.+-. ...+.+...+.|. =+||.+..|++.++++|. +-|-+++-. .+.+..... +..++..
T Consensus 130 ILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a--~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~ 207 (258)
T 4a29_A 130 VLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGA--RFIGIMSRDFETGEINKENQRKLISMIPSNVVK 207 (258)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTC--SEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEE
T ss_pred eehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCC--cEEEEeCCCccccccCHHHHHHHHhhCCCCCEE
Confidence 333444443 4567777778886 799999999999999984 233344321 111111112 2234422
Q ss_pred E---EecCHHHHHHHHhHC
Q 015304 125 T---TFDSVEELHKIRKWH 140 (409)
Q Consensus 125 ~---~vds~~el~~i~~~~ 140 (409)
+ -+.+.+++.++.+..
T Consensus 208 VsESGI~t~~dv~~l~~~G 226 (258)
T 4a29_A 208 VAKLGISERNEIEELRKLG 226 (258)
T ss_dssp EEEESSCCHHHHHHHHHTT
T ss_pred EEcCCCCCHHHHHHHHHCC
Confidence 2 245778888877653
No 129
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=37.34 E-value=2e+02 Score=24.79 Aligned_cols=95 Identities=8% Similarity=0.079 Sum_probs=57.2
Q ss_pred CCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCc---HHHHHHHHH---cCCcEEEc----C--HHHHHHHHhCCC
Q 015304 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPE---PALLEALAA---LGSNFDCA----S--RSEIEAVLALGV 97 (409)
Q Consensus 30 ~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~---~~vl~~l~~---~G~g~~va----S--~~E~~~a~~~G~ 97 (409)
.. ...+.+.+ ++++++..|++.+.+.+...+. ...++.+.. .+++.... + ..-++.+++.|.
T Consensus 126 ~~-~vii~Sf~-----l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~v~~~~~~G~ 199 (234)
T 1o1z_A 126 RK-NLIFSSFD-----LDLLDEKFKGTKYGYLIDEENYGSIENFVERVEKERPYSLHVPYQAFELEYAVEVLRSFRKKGI 199 (234)
T ss_dssp CC-SEEEEESC-----HHHHHHHCTTSCEEEECCTTTTCSHHHHHHHHHHHCCSEEEEEGGGGGSHHHHHHHHHHHHTTC
T ss_pred cC-CEEEEchh-----HHHHHhhCCCCcEEEEeccccccCHHHHHHHcCCCCCCEEEeCHHHhcCCccHHHHHHHHHcCC
Confidence 45 77777776 6778888888777777765322 233444433 23333333 2 344556777775
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHH
Q 015304 98 SPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHK 135 (409)
Q Consensus 98 ~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~ 135 (409)
. -..++ . -++++++.+++. +.-+..|..+.+..
T Consensus 200 ~--v~~wT-v-n~~~~~~~l~~~-vdgIiTD~P~~~~~ 232 (234)
T 1o1z_A 200 V--IFVWT-L-NDPEIYRKIRRE-IDGVITDEVELFVK 232 (234)
T ss_dssp E--EEEES-C-CCHHHHHHHGGG-CSEEEESCHHHHHH
T ss_pred E--EEEeC-C-CCHHHHHHHHHh-CCEEEcCCHHHHhh
Confidence 2 23333 3 367788888888 87667788777654
No 130
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=37.32 E-value=1.7e+02 Score=25.68 Aligned_cols=101 Identities=9% Similarity=0.037 Sum_probs=59.0
Q ss_pred cEEEEeHHHHHHHHHHHHHhCCCcceEEec-CcCC-c-HHHHHHHHHcCC-cEE----EcCHHHHHHHHhCCCCCCcEEE
Q 015304 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAV-KCNP-E-PALLEALAALGS-NFD----CASRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 33 P~~v~d~~~l~~n~~~~~~~~~~~~i~yav-Kan~-~-~~vl~~l~~~G~-g~~----vaS~~E~~~a~~~G~~~~~Ii~ 104 (409)
.+++.+.+ ...++.+++..|.+.+.|-+ .... . ...+..+.+.|+ ++. ..+..-++.+++.|.. -..+
T Consensus 143 ~v~i~Sf~--~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~G~~--v~~w 218 (258)
T 2o55_A 143 RVDYCSFH--HEALAHLKALCPDVKITYLFNYMGQPTPLDFVEQACYGDANGVSMLFHYLTKEQVCTAHEKGLS--VTVW 218 (258)
T ss_dssp GEEEEESS--HHHHHHHHHHCTTCEEEEECCTTSCCCCTTHHHHHHHTTCSEEEEEGGGCCHHHHHHHHHTTCE--EEEE
T ss_pred CEEEEeCC--HHHHHHHHHHCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCeEEecChhhcCHHHHHHHHHCCCE--EEEe
Confidence 56655433 23345667777877666666 3221 1 123333555565 332 2356667788888862 2334
Q ss_pred eC-C-CCCHHHHHHHHHcCCcEEEecCHHHHHHHH
Q 015304 105 AN-P-CKPVSHIKYAANVGVNLTTFDSVEELHKIR 137 (409)
Q Consensus 105 ~g-p-~k~~~~i~~a~~~gv~~~~vds~~el~~i~ 137 (409)
+- + .-++++++.+++.|+.-+..|..+.+..+.
T Consensus 219 Tv~~~~n~~~~~~~l~~~GvdgI~TD~p~~~~~~l 253 (258)
T 2o55_A 219 MPWIFDDSEEDWKKCLELQVDLICSNYPFGLMNFL 253 (258)
T ss_dssp CCTTCCCCHHHHHHHHHHTCSEEEESCHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHH
Confidence 32 0 036788888889898767788888876654
No 131
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=37.23 E-value=1e+02 Score=26.79 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeec
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIG 233 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiG 233 (409)
++++.++.+.+++.||++..+|..... ..+ .+.+.++.++++|. +++.+.
T Consensus 62 ~~~~~~~~~~l~~~gl~i~~~~~~~~~---~~~-------~~~~~i~~A~~lGa---~~v~~~ 111 (262)
T 3p6l_A 62 AQTQKEIKELAASKGIKIVGTGVYVAE---KSS-------DWEKMFKFAKAMDL---EFITCE 111 (262)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECCS---STT-------HHHHHHHHHHHTTC---SEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCc---cHH-------HHHHHHHHHHHcCC---CEEEec
Confidence 667778878888899999998887542 112 23446667778876 344444
No 132
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=37.17 E-value=48 Score=30.40 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=10.8
Q ss_pred CHHHHHHHHHcCCcEEEecC
Q 015304 110 PVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 110 ~~~~i~~a~~~gv~~~~vds 129 (409)
+.+++++|++.|+..+.+|+
T Consensus 216 tl~e~~eAl~aGaDiImLDn 235 (300)
T 3l0g_A 216 NISQVEESLSNNVDMILLDN 235 (300)
T ss_dssp SHHHHHHHHHTTCSEEEEES
T ss_pred CHHHHHHHHHcCCCEEEECC
Confidence 34555556665555444554
No 133
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=36.83 E-value=36 Score=31.65 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=60.3
Q ss_pred HHHHHhCC-CCCCcEEEeCCC---CCHHHHHHHHHcCCcEEEecCHHH------HHHHHhHCCCCeEEEEEecCC-CCC-
Q 015304 89 IEAVLALG-VSPDRIIYANPC---KPVSHIKYAANVGVNLTTFDSVEE------LHKIRKWHPKCDLLIRIKPPD-DSG- 156 (409)
Q Consensus 89 ~~~a~~~G-~~~~~Ii~~gp~---k~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~~~~~v~lRv~~~~-~~~- 156 (409)
+..+.+.| +++++++..|.- .++++++++.+.|+..+..+.+.+ ++.+.+......+.|-++... ++.
T Consensus 169 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~ 248 (326)
T 3niq_A 169 FRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAF 248 (326)
T ss_dssp HHHHHHTTCEEEEEEEEEEECSCCSCTTSTHHHHHHTCEEEEHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEGGGBCTTT
T ss_pred HHHHHhccCCCCceEEEEeecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHhCCCeEEEEEeccccCHhh
Confidence 33444544 345678877653 246788888889997666655543 223333223346777776521 221
Q ss_pred -CCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEee
Q 015304 157 -AKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHI 195 (409)
Q Consensus 157 -~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~ 195 (409)
....+....|++ ..|+.++++.+. +.+++|+..--
T Consensus 249 aPgtgtp~pgGlt--~~e~~~~l~~l~--~~~vvg~DivE 284 (326)
T 3niq_A 249 APGTGTPEIGGMT--SLQAQQLVRGLR--GLDLVGADVVE 284 (326)
T ss_dssp CCCCSSCCSSCBC--HHHHHHHHHTTT--TSCEEEEEEEC
T ss_pred CCCCCCCCCCCCC--HHHHHHHHHHHc--CCCEEEEEEEE
Confidence 111223578999 888888777653 45788876653
No 134
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=36.66 E-value=1.3e+02 Score=28.99 Aligned_cols=102 Identities=8% Similarity=0.085 Sum_probs=71.1
Q ss_pred eHHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEEE--c--CHHHHHHHHhC-CCCCCcEEE
Q 015304 38 DLGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFDC--A--SRSEIEAVLAL-GVSPDRIIY 104 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~v--a--S~~E~~~a~~~-G~~~~~Ii~ 104 (409)
|.+...+.++++|++++ ++.+ .+.+|. ...+++.|.+.|+ .+|- . ....+..+++. ++ +|..
T Consensus 185 ~~~~d~e~v~avR~avG~d~~L--~vDan~~~t~~~A~~~~~~Le~~~i~~iEeP~~~~~~~~~~~l~~~~~i---PIa~ 259 (433)
T 3rcy_A 185 DISLSVEFCRKIRAAVGDKADL--LFGTHGQFTTAGAIRLGQAIEPYSPLWYEEPVPPDNVGAMAQVARAVRI---PVAT 259 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTSSEE--EECCCSCBCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHHHSSS---CEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCeE--EEeCCCCCCHHHHHHHHHHhhhcCCCEEECCCChhhHHHHHHHHhccCC---CEEe
Confidence 34566778888999885 4544 478886 3456777888887 6772 2 45666666554 33 5888
Q ss_pred eCCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCCe
Q 015304 105 ANPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKCD 144 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~~ 144 (409)
.....+..+++.+++.| +..+++| .+.+..++.+.+....
T Consensus 260 dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~~~g 305 (433)
T 3rcy_A 260 GERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAEVYN 305 (433)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcC
Confidence 88888999999999876 4566666 5778888877765443
No 135
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=36.46 E-value=2.8e+02 Score=26.88 Aligned_cols=29 Identities=28% Similarity=0.160 Sum_probs=18.7
Q ss_pred cEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 101 RIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
.|+..|...+..++..|+..|+..+.+.+
T Consensus 338 pvia~GGi~~~~di~kal~~GA~~v~vG~ 366 (491)
T 1zfj_A 338 TIIADGGIKYSGDIVKALAAGGNAVMLGS 366 (491)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred CEEeeCCCCCHHHHHHHHHcCCcceeeCH
Confidence 46666777777777777777766444443
No 136
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=36.40 E-value=1.5e+02 Score=25.66 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=50.5
Q ss_pred cceEEecCcCC---cHHHHHHHHHcCC-cEEEc----CHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEE
Q 015304 56 IHPHYAVKCNP---EPALLEALAALGS-NFDCA----SRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 56 ~~i~yavKan~---~~~vl~~l~~~G~-g~~va----S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~ 125 (409)
..+...+.... ...+++.|.+.|+ .+|+. ...|....++.-++ +-++=.|...+.++.+.|++.|..++
T Consensus 13 ~~vi~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~~p-~~~IGAGTVlt~~~a~~ai~AGA~fi 89 (217)
T 3lab_A 13 KPLIPVIVIDDLVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVP-EAIVGAGTVCTADDFQKAIDAGAQFI 89 (217)
T ss_dssp CSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCT-TSEEEEECCCSHHHHHHHHHHTCSEE
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCeEeeccccCHHHHHHHHHcCCCEE
Confidence 45566666665 5788899999999 89985 34444444444453 56777788899999999999999854
No 137
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=36.35 E-value=1.9e+02 Score=26.67 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=9.9
Q ss_pred EEEeCCCCCHHHHHHHHHcCCc
Q 015304 102 IIYANPCKPVSHIKYAANVGVN 123 (409)
Q Consensus 102 Ii~~gp~k~~~~i~~a~~~gv~ 123 (409)
|+..|...+.+++..|+..|..
T Consensus 213 VIa~GGI~~g~Dv~kalalGAd 234 (336)
T 1ypf_A 213 IIADGGIRTNGDVAKSIRFGAT 234 (336)
T ss_dssp EEEESCCCSTHHHHHHHHTTCS
T ss_pred EEEeCCCCCHHHHHHHHHcCCC
Confidence 4444444444444444444443
No 138
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=35.65 E-value=2.8e+02 Score=25.91 Aligned_cols=16 Identities=6% Similarity=0.279 Sum_probs=11.7
Q ss_pred EEcCHHHHHHHHhCCC
Q 015304 82 DCASRSEIEAVLALGV 97 (409)
Q Consensus 82 ~vaS~~E~~~a~~~G~ 97 (409)
.|.|..+++.+.++|.
T Consensus 152 ~v~t~e~A~~l~~aGa 167 (361)
T 3khj_A 152 NVVTEEATKELIENGA 167 (361)
T ss_dssp EECSHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHcCc
Confidence 5677777777777776
No 139
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=35.42 E-value=89 Score=27.26 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCC-cEEEcCHHHHHHHHhCCCCCCcEE------------EeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 67 EPALLEALAALGS-NFDCASRSEIEAVLALGVSPDRII------------YANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 67 ~~~vl~~l~~~G~-g~~vaS~~E~~~a~~~G~~~~~Ii------------~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
...+++...+.|+ ++.+.|.++++.+++. ++ -+|+ |..| +.++++.+++.|+..+.+|.
T Consensus 38 ~~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~-v~-~Pvig~~k~~~~~~~~~I~~--~~~~i~~~~~aGad~I~l~~ 109 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVRIEGIENLRTVRPH-LS-VPIIGIIKRDLTGSPVRITP--YLQDVDALAQAGADIIAFDA 109 (229)
T ss_dssp HHHHHHHHHHTTCSEEEEESHHHHHHHGGG-CC-SCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHCCCcEEEECCHHHHHHHHHh-cC-CCEEEEEeecCCCCceEeCc--cHHHHHHHHHcCCCEEEECc
Confidence 3567777777888 9999999999988875 22 1232 2233 45678888899988665543
No 140
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=35.32 E-value=1.7e+02 Score=27.03 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHH-c-CC--eEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEA-S-GL--SVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~-~l--~l~Glh~H~gs~ 198 (409)
|.++.++++.+++ . ++ ...++|+|--.+
T Consensus 179 P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~G 210 (325)
T 3eeg_A 179 PWQYGERIKYLMDNVSNIDKAILSAHCHNDLG 210 (325)
T ss_dssp HHHHHHHHHHHHHHCSCGGGSEEEECBCCTTS
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEEeCCCCC
Confidence 7888889888865 2 31 356888887444
No 141
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=34.87 E-value=1.3e+02 Score=24.83 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=47.4
Q ss_pred HHHHHHcCCcEEEcCHHHHHHHHhCC-CCCCcEEEeCCCCCHHHHHHHHHcCCc--EEEec-----------------CH
Q 015304 71 LEALAALGSNFDCASRSEIEAVLALG-VSPDRIIYANPCKPVSHIKYAANVGVN--LTTFD-----------------SV 130 (409)
Q Consensus 71 l~~l~~~G~g~~vaS~~E~~~a~~~G-~~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~vd-----------------s~ 130 (409)
++.....|+.+.+-|.+++......+ ++..++++.- ++++++..+++.|+. .+++. +.
T Consensus 50 lk~a~P~gvk~~i~sve~ai~~~~~~~~~~~~v~ll~--k~p~d~~~lve~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ 127 (165)
T 1vsq_C 50 LTQVAPPGVTAHVVDVAKMIRVYNNPKYAGERVMLLF--TNPTDVERLVEGGVKITSVNVGGMAFRQGKTQVNNAVSVDE 127 (165)
T ss_dssp HHHTCCTTCEEEEECHHHHHHHHTCGGGTTCEEEEEE--SSHHHHHHHHHTTCCCSEEEEEECCCCTTSEECSSSCEECH
T ss_pred HHhcCCCCCeEEEEEHHHHHHHHhccccCCcEEEEEE--CCHHHHHHHHHcCCCCCEEEECCCcCCCCCeEEeccEeeCH
Confidence 33333346677777777777666654 3445555443 456677777766653 24553 46
Q ss_pred HHHHHHHhHC-CCCeEEEEEec
Q 015304 131 EELHKIRKWH-PKCDLLIRIKP 151 (409)
Q Consensus 131 ~el~~i~~~~-~~~~v~lRv~~ 151 (409)
+|++.+.++. ...++-+|.-|
T Consensus 128 ed~~~lk~L~~~Gv~v~~q~vP 149 (165)
T 1vsq_C 128 KDIEAFKKLNARGIELEVRKVS 149 (165)
T ss_dssp HHHHHHHHHHHTTCEEEECSST
T ss_pred HHHHHHHHHHHCCCEEEEEECC
Confidence 7777777764 35667777766
No 142
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=34.84 E-value=2.6e+02 Score=25.38 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCCccEEE--EeHHHHHHHHHHHHHhCCCcceEEecCcCC-cHHHHHHHHHcCCcEEEcCH--------------H----
Q 015304 29 FDEVPFYI--LDLGVVVTLYNQMISKLPMIHPHYAVKCNP-EPALLEALAALGSNFDCASR--------------S---- 87 (409)
Q Consensus 29 ~~t~P~~v--~d~~~l~~n~~~~~~~~~~~~i~yavKan~-~~~vl~~l~~~G~g~~vaS~--------------~---- 87 (409)
.+. |+-| ++.+.++.-++. +..+...+-.-. .+.+++.+++.|+.+-+... .
T Consensus 114 ~~v-piSIDT~~~~V~~aAl~a------Ga~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~ 186 (297)
T 1tx2_A 114 VKL-PISIDTYKAEVAKQAIEA------GAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYD 186 (297)
T ss_dssp SCS-CEEEECSCHHHHHHHHHH------TCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHH
T ss_pred CCc-eEEEeCCCHHHHHHHHHc------CCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 355 6655 555555555543 455667776643 78899999999987666551 1
Q ss_pred HHHHHHhCCCCCCcEEEeC
Q 015304 88 EIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 88 E~~~a~~~G~~~~~Ii~~g 106 (409)
-++.+.++|+++++|++..
T Consensus 187 ~i~~a~~~GI~~~~IilDP 205 (297)
T 1tx2_A 187 SIKIAKDAGVRDENIILDP 205 (297)
T ss_dssp HHHHHHHTTCCGGGEEEEC
T ss_pred HHHHHHHcCCChhcEEEeC
Confidence 2456677899888999873
No 143
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=34.59 E-value=99 Score=29.47 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEE--Ec--CHHHHHHHHhC-CCCCCcEEEe
Q 015304 39 LGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFD--CA--SRSEIEAVLAL-GVSPDRIIYA 105 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~--va--S~~E~~~a~~~-G~~~~~Ii~~ 105 (409)
.+.-.+.++++|++++ ++.+ .+.+|. ...+++.|.+.|+ .+| +. ....+..+++. ++ +|...
T Consensus 191 ~~~d~~~v~avR~a~G~d~~l--~vDan~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~~~~~~~~l~~~~~i---PIa~d 265 (404)
T 4e5t_A 191 LERSEAFCKQIRAAVGTKADL--LFGTHGQFTVSGAKRLARRLEAYDPLWFEEPIPPEKPEDMAEVARYTSI---PVATG 265 (404)
T ss_dssp HHHHHHHHHHHHHHHGGGSEE--EECCCSCBCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHHHCSS---CEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCeE--EEeCCCCcCHHHHHHHHHHHhhcCCcEEECCCCcccHHHHHHHHhhCCC---CEEeC
Confidence 4556778888888885 4444 478997 2456778888887 777 43 55666665553 33 57777
Q ss_pred CCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCC
Q 015304 106 NPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKC 143 (409)
Q Consensus 106 gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~ 143 (409)
....+.++++.+++.| +..+++| .+.+..++.+.+...
T Consensus 266 E~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 309 (404)
T 4e5t_A 266 ERLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKIAAMAECH 309 (404)
T ss_dssp TTCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 7777888888888766 4455555 688888887765433
No 144
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=34.38 E-value=88 Score=30.30 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=50.6
Q ss_pred HHHHHHHcCCeEEEE----EEee----CCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCC-cCCCCCCCH
Q 015304 177 LLEAAEASGLSVVGV----AFHI----GSA-ATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFS-FTNSNTKSF 246 (409)
Q Consensus 177 ~~~~~~~~~l~l~Gl----h~H~----gs~-~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~-~~~~~~~~~ 246 (409)
+.+.++..++.+... ..|. |.. ..+.+....+++.+++.++.+.++|. +.+.+-+|.. ..+....+.
T Consensus 125 lk~~l~~~GL~~~~~t~nl~~h~~y~~G~~~spd~evR~~ai~~lk~aId~A~~LGa---~~vv~~~G~~G~~~~~~~~~ 201 (438)
T 1a0c_A 125 IKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNADVFAYSAAQVKKALEITKELGG---ENYVFWGGREGYETLLNTDM 201 (438)
T ss_dssp HHHHHTTCSCEEEEEECCCSSSGGGTTCSTTCSCHHHHHHHHHHHHHHHHHHHHTTC---SEEEECCTTSEESCGGGCCH
T ss_pred HHHHHHHhCCceEeccccccCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC---CEEEEccCCCccccCCCCCH
Confidence 333445568887642 2232 221 24666677788888999999999987 3566655542 111111223
Q ss_pred ----HHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 247 ----QEAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 247 ----~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
+.+.+.++... ++....+ -+++|.+||
T Consensus 202 ~~~~~~~~e~L~~~~-~~A~~~G---v~v~l~IEp 232 (438)
T 1a0c_A 202 EFELDNFARFLHMAV-DYAKEIG---FEGQFLIEP 232 (438)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHTT---CCSEEEECC
T ss_pred HHHHHHHHHHHHHHH-HHHHhcC---CCcEEEEee
Confidence 34445554433 2322111 135799997
No 145
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=34.35 E-value=2.2e+02 Score=24.29 Aligned_cols=105 Identities=10% Similarity=0.074 Sum_probs=59.4
Q ss_pred HHHHHHhhcCCCCCccEEEEeHHHHHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEE----EcCHHHHHHH
Q 015304 18 FVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFD----CASRSEIEAV 92 (409)
Q Consensus 18 ~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~----vaS~~E~~~a 92 (409)
+++..+....+ .. ..++.+.+ ...++.+++..|++.+.|-+...+ ...+.+.++ ++. ..+..-++.+
T Consensus 111 ~~~~v~~~l~~-~~-~v~i~Sf~--~~~l~~~~~~~p~~~~~~l~~~~~----~~~~~~~~~~~i~~~~~~~~~~~v~~~ 182 (224)
T 1vd6_A 111 AARRLAALLRG-RE-GVWVSSFD--PLALLALRKAAPGLPLGFLMAEDH----SALLPCLGVEAVHPHHALVTEEAVAGW 182 (224)
T ss_dssp HHHHHHHHTTT-CS-SEEEEESC--HHHHHHHHHHCTTSCEEEEESSCC----GGGGGGSCCSEEEEBGGGCCHHHHHHH
T ss_pred HHHHHHHHHhc-CC-cEEEEeCC--HHHHHHHHHHCCCCCEEEEecccc----HHHHHHcCCcEEecCcccCCHHHHHHH
Confidence 34443333333 44 66665443 233456677778776666665433 233344454 332 2356667777
Q ss_pred HhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHH
Q 015304 93 LALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELH 134 (409)
Q Consensus 93 ~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~ 134 (409)
++.|.. -.+++ . -++++++.+++.|+.-+..|..+.+.
T Consensus 183 ~~~G~~--v~~wt-v-n~~~~~~~l~~~GvdgI~TD~p~~~~ 220 (224)
T 1vd6_A 183 RKRGLF--VVAWT-V-NEEGEARRLLALGLDGLIGDRPEVLL 220 (224)
T ss_dssp HHTTCE--EEEEC-C-CCHHHHHHHHHTTCSEEEESCHHHHT
T ss_pred HHCCCE--EEEEe-C-CCHHHHHHHHhcCCCEEEcCCHHHHH
Confidence 788862 23333 3 36778888888888766778777654
No 146
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=34.34 E-value=2.2e+02 Score=25.89 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=21.6
Q ss_pred cEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHH
Q 015304 80 NFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119 (409)
Q Consensus 80 g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~ 119 (409)
.++|.|.+|++.+.++|. + ++...+ .+.++++.+++
T Consensus 212 ~vev~tlee~~eA~~aGa--D-~I~ld~-~~~e~l~~~v~ 247 (296)
T 1qap_A 212 EVEVENLDELDDALKAGA--D-IIMLDN-FNTDQMREAVK 247 (296)
T ss_dssp EEEESSHHHHHHHHHTTC--S-EEEESS-CCHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHcCC--C-EEEECC-CCHHHHHHHHH
Confidence 667777777777777763 2 333333 35666666654
No 147
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=34.25 E-value=2.1e+02 Score=26.40 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=34.8
Q ss_pred HHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCC
Q 015304 134 HKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGS 197 (409)
Q Consensus 134 ~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs 197 (409)
+.+.+.. +..|.+|+++.+. ..-|.+ .++..++++.+++.|+.+ ||.|.|.
T Consensus 202 ~avr~~v-~~pv~vRls~~~~--------~~~g~~--~~~~~~la~~L~~~Gvd~--i~vs~g~ 252 (340)
T 3gr7_A 202 DAVREVW-DGPLFVRISASDY--------HPDGLT--AKDYVPYAKRMKEQGVDL--VDVSSGA 252 (340)
T ss_dssp HHHHHHC-CSCEEEEEESCCC--------STTSCC--GGGHHHHHHHHHHTTCCE--EEEECCC
T ss_pred HHHHHhc-CCceEEEeccccc--------cCCCCC--HHHHHHHHHHHHHcCCCE--EEEecCC
Confidence 3333444 6789999998421 122777 889999999998888664 6777553
No 148
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=33.75 E-value=1.1e+02 Score=28.12 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhCC--------CcceEEecCcCCc------HHHHHHHHHcCC-cEEEcCH------------------
Q 015304 40 GVVVTLYNQMISKLP--------MIHPHYAVKCNPE------PALLEALAALGS-NFDCASR------------------ 86 (409)
Q Consensus 40 ~~l~~n~~~~~~~~~--------~~~i~yavKan~~------~~vl~~l~~~G~-g~~vaS~------------------ 86 (409)
..+.+-++.+++..+ +.- ..+|-.+. ..+++.+.+.|+ ++.|+.-
T Consensus 188 ~~~~~il~~vr~~~~~~~~~~g~~~P--v~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg 265 (336)
T 1f76_A 188 EALDDLLTAIKNKQNDLQAMHHKYVP--IAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGG 265 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCC--EEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSE
T ss_pred HHHHHHHHHHHHHHHhhhhcccccCc--eEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCC
Confidence 444555666665541 222 23576653 677899999998 7877521
Q ss_pred -----------HHHHHHHhCCCC-CCcEEEeCCCCCHHHHHHHHHcCCcEEEecC
Q 015304 87 -----------SEIEAVLALGVS-PDRIIYANPCKPVSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 87 -----------~E~~~a~~~G~~-~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds 129 (409)
.-+..+++. ++ .-.|+.+|...+.++...+++.|+..+.+.+
T Consensus 266 ~~g~~~~~~~~~~i~~i~~~-~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr 319 (336)
T 1f76_A 266 LSGRPLQLKSTEIIRRLSLE-LNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYS 319 (336)
T ss_dssp EEEGGGHHHHHHHHHHHHHH-HTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred cCCchhHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeH
Confidence 112223332 11 1258888988999999999988887655543
No 149
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=33.42 E-value=1.3e+02 Score=27.29 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=41.2
Q ss_pred HHHHHHHHHc-CC--cEEEcCHHHHHHHHhCCCCCCcEEEeCC-CCCHHHHHHHHHcCCcEE
Q 015304 68 PALLEALAAL-GS--NFDCASRSEIEAVLALGVSPDRIIYANP-CKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 68 ~~vl~~l~~~-G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp-~k~~~~i~~a~~~gv~~~ 125 (409)
.++++.+.+. ++ .+|......++.++++|. .|+..-. ...++.++.+.++|+.++
T Consensus 79 ~pvi~~l~~~~~~piSIDT~~~~va~aAl~aGa---~iINdvsg~~d~~~~~~~a~~~~~vV 137 (282)
T 1aj0_A 79 IPVVEAIAQRFEVWISVDTSKPEVIRESAKVGA---HIINDIRSLSEPGALEAAAETGLPVC 137 (282)
T ss_dssp HHHHHHHHHHCCCEEEEECCCHHHHHHHHHTTC---CEEEETTTTCSTTHHHHHHHHTCCEE
T ss_pred HHHHHHHHhhcCCeEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCHHHHHHHHHhCCeEE
Confidence 5677777654 75 999999999999999985 5775522 256677888889998744
No 150
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=33.42 E-value=91 Score=25.76 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=45.4
Q ss_pred HcCCcEEEcCHHHHHHHHhCC-CCCCcEEEeCCCCCHHHHHHHHHcCCc--EEEec-----------------CHHHHHH
Q 015304 76 ALGSNFDCASRSEIEAVLALG-VSPDRIIYANPCKPVSHIKYAANVGVN--LTTFD-----------------SVEELHK 135 (409)
Q Consensus 76 ~~G~g~~vaS~~E~~~a~~~G-~~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~vd-----------------s~~el~~ 135 (409)
..|+.+.+-|.+++....+.+ ++..++++.- ++++++..+++.|+. .+++. +.+|++.
T Consensus 52 P~gvk~~i~sve~ai~~~~~~~~~~~~v~ll~--k~p~d~~~lve~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~ 129 (164)
T 1nrz_A 52 PPGMKVNVVSLEKAVAVYHNPQYQDETVFYLF--TNPHDVLTMVRQGVQIATLNIGGMAWRPGKKQLTKAVSLDPQDIQA 129 (164)
T ss_dssp CTTCEEEEECHHHHHHHHTCGGGTTCEEEEEE--SSHHHHHHHHTTTCCCSEEEEEEBCCCTTCEEEETTEEECHHHHHH
T ss_pred CCCCeEEEEEHHHHHHHHhcccCCCceEEEEE--CCHHHHHHHHHcCCCCCEEEECCCcCCCCCeEEeccEeeCHHHHHH
Confidence 346677777777777666654 3445555443 456667766766653 23443 4778887
Q ss_pred HHhHC-CCCeEEEEEec
Q 015304 136 IRKWH-PKCDLLIRIKP 151 (409)
Q Consensus 136 i~~~~-~~~~v~lRv~~ 151 (409)
+.++. ...++-+|.-|
T Consensus 130 lk~L~~~Gv~v~~q~vP 146 (164)
T 1nrz_A 130 FRELDKLGVKLDLRVVA 146 (164)
T ss_dssp HHHHHHTTCEEEECSST
T ss_pred HHHHHHCCCEEEEEECc
Confidence 77764 35667777766
No 151
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=33.27 E-value=1.4e+02 Score=26.79 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCC----------------------------CCcEEEeCCCCCHHHHHHH
Q 015304 68 PALLEALAALGS--NFDCASRSEIEAVLALGVS----------------------------PDRIIYANPCKPVSHIKYA 117 (409)
Q Consensus 68 ~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~----------------------------~~~Ii~~gp~k~~~~i~~a 117 (409)
..+++...+.|. .++|.|.+|++.+.++|.+ .-.++..|...++++++.+
T Consensus 152 ~~l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l 231 (272)
T 3qja_A 152 VSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAY 231 (272)
T ss_dssp HHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHH
Q ss_pred HHcCCcEEEecC
Q 015304 118 ANVGVNLTTFDS 129 (409)
Q Consensus 118 ~~~gv~~~~vds 129 (409)
.+.|+.-+.|.+
T Consensus 232 ~~~GadgvlVGs 243 (272)
T 3qja_A 232 AGAGADAVLVGE 243 (272)
T ss_dssp HHTTCSEEEECH
T ss_pred HHcCCCEEEEcH
No 152
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=33.14 E-value=2.5e+02 Score=25.30 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCc----EE-------EcCHHHHHHHHhCCCCCCcEEEeCCCCC---
Q 015304 45 LYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSN----FD-------CASRSEIEAVLALGVSPDRIIYANPCKP--- 110 (409)
Q Consensus 45 n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g----~~-------vaS~~E~~~a~~~G~~~~~Ii~~gp~k~--- 110 (409)
.++++++..|++.+.+-+. .+.-+..+...|+. +. ..+..=+..+.+.|.. -..++-...+
T Consensus 169 ~l~~~~~~~p~~~~~~l~~---~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~V~~ah~~G~~--V~vWTv~t~d~~~ 243 (292)
T 3mz2_A 169 SARFFYEKNPNFMFEAFVK---TKEAVQDYEDNGIPWSHIMAYVGPKITPEVREVIDMLHERGVM--CMISTAPSDDKLS 243 (292)
T ss_dssp HHHHHHHHCTTCCEEEECC---SHHHHHHHHHTTCCGGGEEEEEESSCCHHHHHHHHHHHHTTBC--EEEECTTTGGGSS
T ss_pred HHHHHHHHCCCCeEEEEeC---CHHHHHHHHHhCCChhheeeeecccccccCHHHHHHHHHCCCE--EEEEeCCCcchhh
Confidence 3455666677766666554 23334445555541 11 1223445667777852 2233311111
Q ss_pred -----HHHHHHHHHcCCcEEEecCHHHHHHHHhH
Q 015304 111 -----VSHIKYAANVGVNLTTFDSVEELHKIRKW 139 (409)
Q Consensus 111 -----~~~i~~a~~~gv~~~~vds~~el~~i~~~ 139 (409)
.++++.+++.||..|.-|..+.+..+.+.
T Consensus 244 ~~~~~~~~~~~L~~~GVDgIiTD~P~~l~~~L~~ 277 (292)
T 3mz2_A 244 TPESRAEAYRMIIRQGVDIIESDRPIEVAEAISS 277 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHGG
T ss_pred hccccHHHHHHHHHcCCCEEEeCCHHHHHHHHHH
Confidence 35788888899987788999888877654
No 153
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=32.73 E-value=1.8e+02 Score=26.25 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=57.2
Q ss_pred CCCcEEEeCCC-CCHHHHHHHHHc-CCcEEEecCHHHHHHHHhHCCCCeEEEEEecCC-CCC--CCCCCCCCcCCCCCcc
Q 015304 98 SPDRIIYANPC-KPVSHIKYAANV-GVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPD-DSG--AKHPLDSKYGVDHHPQ 172 (409)
Q Consensus 98 ~~~~Ii~~gp~-k~~~~i~~a~~~-gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~-~~~--~~~~~~srfGi~~~~~ 172 (409)
++++++..|.- .++++.+++.+. |+.++..+ ...++.+.+..+...+.|-++... ++. ....+....|++ ..
T Consensus 149 ~~~~i~~iGiR~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~vylSiDiDvlDpa~aPgtgtp~pgGlt--~~ 225 (287)
T 3lhl_A 149 GDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGG-IDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVN--YR 225 (287)
T ss_dssp CTTSEEEEEECBCCHHHHHHHHTSCSSEEEETC-CTTHHHHHHHTTTCEEEEEEEGGGBCTTTCCSBSSCCSSCBC--HH
T ss_pred CcccEEEEEcCCCCHHHHHHHHhcCCCEEEecH-HhHHHHHHHHcCCCcEEEEEecCcCCHhhCCCCCCCCCCCCC--HH
Confidence 45677766542 356778877777 77544444 233444444434446777776521 221 111233688999 88
Q ss_pred cHHHHHHHHHHcCCeEEEEEEee
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHI 195 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~ 195 (409)
|+.++++.+...+.+++|+..=-
T Consensus 226 e~~~~l~~l~~~~~~vvg~DivE 248 (287)
T 3lhl_A 226 EFQEIFKIIKNSNINIVGCDIVE 248 (287)
T ss_dssp HHTHHHHHHHTSCCEEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCEEEEEEEE
Confidence 99888887754567888886653
No 154
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=32.71 E-value=64 Score=29.79 Aligned_cols=101 Identities=9% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHhCC-CCCCcEEEeCCC---CCHHHHHHHHHcCCcEEEecCHHH------HHHHHhHCCCCeEEEEEecCC-CCC--
Q 015304 90 EAVLALG-VSPDRIIYANPC---KPVSHIKYAANVGVNLTTFDSVEE------LHKIRKWHPKCDLLIRIKPPD-DSG-- 156 (409)
Q Consensus 90 ~~a~~~G-~~~~~Ii~~gp~---k~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~~~~~v~lRv~~~~-~~~-- 156 (409)
..+.+.| +++++++..|.- .++++.+++.+.|+..+..+.+.+ ++.+.+......+.|-++... ++.
T Consensus 173 ~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~vylSiDiDvLDpa~a 252 (319)
T 3nio_A 173 RRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRXQGFRVVQAEECWHXSLEPLMAEVREXVGGGPVYLSFDIDGIDPAWA 252 (319)
T ss_dssp HHHHHTTCEEEEEEEEEEECSEESSTHHHHHHHHHTCEEEEGGGTTTCCSHHHHHHHHHHHCSSEEEEEEEGGGBCTTTC
T ss_pred HHHhhccCCCCCcEEEEEeCCCCCCHHHHHHHHhcCcEEEEHHHhhhcCHHHHHHHHHHhcCCCcEEEEEecCccChhhC
Confidence 4444544 355678877764 357888999899997666554321 334443323446777776522 221
Q ss_pred CCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 157 AKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 157 ~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
....+....|++ ..|+.++++.+. +.+++|+..=
T Consensus 253 Pgtgtp~pgGlt--~~e~~~~l~~l~--~~~vvg~Div 286 (319)
T 3nio_A 253 PGTGTPEIGGLT--TIQAMEIIRGCQ--GLDLIGCDLV 286 (319)
T ss_dssp CCBSSCCSSCBC--HHHHHHHHHTTT--TSEEEEEEEE
T ss_pred CCCCCCCCCCCC--HHHHHHHHHHhc--cCCeeEEEEE
Confidence 111223578999 888877777552 5678887654
No 155
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=32.53 E-value=64 Score=30.08 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCC-cEEE-----------------cCHHHHHHHHhCCCCCCcEEEe-CC-CCCHHHHHHHHHcCCcEE-E
Q 015304 68 PALLEALAALGS-NFDC-----------------ASRSEIEAVLALGVSPDRIIYA-NP-CKPVSHIKYAANVGVNLT-T 126 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~v-----------------aS~~E~~~a~~~G~~~~~Ii~~-gp-~k~~~~i~~a~~~gv~~~-~ 126 (409)
..+++.|.+.|+ .+|+ .+..|........++.-+|... .| ....+.++.|.+.|+..+ .
T Consensus 33 ~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I 112 (345)
T 1nvm_A 33 RAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRV 112 (345)
T ss_dssp HHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEE
Confidence 567778888887 7777 4566654333333343456554 23 125788999999988632 3
Q ss_pred ecCH---HHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEeeCCCCCCHH
Q 015304 127 FDSV---EELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFA 203 (409)
Q Consensus 127 vds~---~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~ 203 (409)
.++. +++....+.+++..+.+++...+ . +..+ ++.+.++++.+...|.....+.=-.|... +.
T Consensus 113 ~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~--------a--~~~~--~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~--P~ 178 (345)
T 1nvm_A 113 ATHCTEADVSKQHIEYARNLGMDTVGFLMM--------S--HMIP--AEKLAEQGKLMESYGATCIYMADSGGAMS--MN 178 (345)
T ss_dssp EEETTCGGGGHHHHHHHHHHTCEEEEEEES--------T--TSSC--HHHHHHHHHHHHHHTCSEEEEECTTCCCC--HH
T ss_pred EEeccHHHHHHHHHHHHHHCCCEEEEEEEe--------C--CCCC--HHHHHHHHHHHHHCCCCEEEECCCcCccC--HH
Confidence 4454 34444433333333444554311 1 2234 67788888887777888888877788763 55
Q ss_pred HHHHHHHHHH
Q 015304 204 AYRGAIAAAK 213 (409)
Q Consensus 204 ~~~~~i~~~~ 213 (409)
...+.++.++
T Consensus 179 ~v~~lv~~l~ 188 (345)
T 1nvm_A 179 DIRDRMRAFK 188 (345)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 156
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=32.05 E-value=1.4e+02 Score=26.79 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC--cEEEcCHHHHHHHHhCC---------------------------CCCCcEEEe-CCCCCHHHHHHH
Q 015304 68 PALLEALAALGS--NFDCASRSEIEAVLALG---------------------------VSPDRIIYA-NPCKPVSHIKYA 117 (409)
Q Consensus 68 ~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G---------------------------~~~~~Ii~~-gp~k~~~~i~~a 117 (409)
..+++...+.|. =+||.+..|++.+.++| ++.+.+++. |...++++++.+
T Consensus 159 ~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l 238 (272)
T 3tsm_A 159 KELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRL 238 (272)
T ss_dssp HHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHH
Q ss_pred HHcCCcEEEecC
Q 015304 118 ANVGVNLTTFDS 129 (409)
Q Consensus 118 ~~~gv~~~~vds 129 (409)
.+.|+.-+.|.+
T Consensus 239 ~~~Ga~gvLVG~ 250 (272)
T 3tsm_A 239 EKSGIGTFLIGE 250 (272)
T ss_dssp HTTTCCEEEECH
T ss_pred HHcCCCEEEEcH
No 157
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=32.03 E-value=1.1e+02 Score=25.24 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=43.8
Q ss_pred cCCcEEEcCHHHHHHHHhCC-CCCCcEEEeCCCCCHHHHHHHHHcCCc--EEEec-----------------CHHHHHHH
Q 015304 77 LGSNFDCASRSEIEAVLALG-VSPDRIIYANPCKPVSHIKYAANVGVN--LTTFD-----------------SVEELHKI 136 (409)
Q Consensus 77 ~G~g~~vaS~~E~~~a~~~G-~~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~vd-----------------s~~el~~i 136 (409)
.|+.+.+-|.+++......+ ++..++++.- ++++++..+++.|+. .+++. +.+|++.+
T Consensus 54 ~gvk~~i~sve~ai~~~~~~~~~~~~v~ll~--k~p~d~~~lve~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~l 131 (163)
T 1ble_A 54 SNVKASAVSVSKMAKAFHSPRYEGVTAMLLF--ENPSDIVSLIEAGVPIKTVNVGGMRFENHRRQITKSVSVTEQDIKAF 131 (163)
T ss_dssp TTSEEEEECHHHHHHHHHCSTTTTCEEEEEE--SSSHHHHHHHTTTCCCCEEEEEEBCCCTTSEECSSSBEECHHHHHHH
T ss_pred CCCeEEEEEHHHHHHHHhcccCCCceEEEEE--CCHHHHHHHHHcCCCCCEEEECCCCCCCCCeEEeccEeeCHHHHHHH
Confidence 36667777777777666654 3445555432 344666666666652 24442 46777777
Q ss_pred HhHC-CCCeEEEEEec
Q 015304 137 RKWH-PKCDLLIRIKP 151 (409)
Q Consensus 137 ~~~~-~~~~v~lRv~~ 151 (409)
.++. ...++-+|.-|
T Consensus 132 ~~L~~~Gv~v~~q~vP 147 (163)
T 1ble_A 132 ETLSDKGVKLELRQLP 147 (163)
T ss_dssp HHHHHTTCEEEECSST
T ss_pred HHHHHCCCEEEEEECC
Confidence 7764 35667777766
No 158
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=31.95 E-value=48 Score=29.15 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHcCCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeec
Q 015304 173 EIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIG 233 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiG 233 (409)
.+.+.++.++..|.+.+.+++|.++.....+.+...++.+.++.+.+++.|+ .+-+=+.+
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~ 144 (281)
T 3u0h_A 85 LLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQVAVELLPLGM-RVGLEYVG 144 (281)
T ss_dssp THHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEEECCC
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHHHHcCC-EEEEEecc
Confidence 3455666667778877766666554332334566677777888888888887 66555654
No 159
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=31.89 E-value=1.6e+02 Score=26.07 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=54.5
Q ss_pred HHHHHHHcCCcEEEe------cCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCC
Q 015304 113 HIKYAANVGVNLTTF------DSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGL 186 (409)
Q Consensus 113 ~i~~a~~~gv~~~~v------ds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l 186 (409)
.+..+.+.|+..+-+ .+++|+..+.+.+.+..+ =+.| | =||+ .+.+.++++.+.+.|+
T Consensus 173 Aiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~--~lEP---------T---GGId--l~Nf~~I~~i~l~aGv 236 (275)
T 3m6y_A 173 AIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGF--ALEP---------T---GGID--KENFETIVRIALEANV 236 (275)
T ss_dssp HHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTC--EEEE---------B---SSCC--TTTHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc--eECC---------C---CCcc--HhHHHHHHHHHHHcCC
Confidence 455556778763322 788899988877644444 2343 1 2888 8999999999988888
Q ss_pred eEEEEEEeeC-----CCCCCHHHHHHHHHHHHHH
Q 015304 187 SVVGVAFHIG-----SAATKFAAYRGAIAAAKAV 215 (409)
Q Consensus 187 ~l~Glh~H~g-----s~~~~~~~~~~~i~~~~~~ 215 (409)
+.+--|.+.. ++...++...+.+..++++
T Consensus 237 ~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~l 270 (275)
T 3m6y_A 237 EQVIPHVYSSIIDKETGNTKVEAVRELLAVVKKL 270 (275)
T ss_dssp SCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHHH
T ss_pred CeecccccceeccCCCCCCCHHHHHHHHHHHHHH
Confidence 7766665532 2233455554444444443
No 160
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=31.59 E-value=1.2e+02 Score=26.43 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCC-cEEEcCH-----------HHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC-----H
Q 015304 68 PALLEALAALGS-NFDCASR-----------SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS-----V 130 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS~-----------~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds-----~ 130 (409)
..+++.+.+.|+ .+.+... ..++.+++. ++ -+++..|...+.++++.+++.|+..+.+.+ .
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~-~~-ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~dp 115 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL-TT-LPIIASGGAGKMEHFLEAFLRGADKVSINTAAVENP 115 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGG-CC-SCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHHCT
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHh-CC-CCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhhCh
Confidence 577888888887 4544322 233333333 22 368999999999999999999987666654 3
Q ss_pred HHHHHHHhHC
Q 015304 131 EELHKIRKWH 140 (409)
Q Consensus 131 ~el~~i~~~~ 140 (409)
+.+..+.+..
T Consensus 116 ~~~~~~~~~~ 125 (247)
T 3tdn_A 116 SLITQIAQTF 125 (247)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4455555443
No 161
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=31.49 E-value=1.9e+02 Score=26.19 Aligned_cols=95 Identities=8% Similarity=0.062 Sum_probs=56.4
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHcCCcEEEecCHHH------HHHHHhHC---CCCeEEEEEecCC-CCC--CCCCCCC
Q 015304 97 VSPDRIIYANPC-KPVSHIKYAANVGVNLTTFDSVEE------LHKIRKWH---PKCDLLIRIKPPD-DSG--AKHPLDS 163 (409)
Q Consensus 97 ~~~~~Ii~~gp~-k~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~---~~~~v~lRv~~~~-~~~--~~~~~~s 163 (409)
++++++++.|.- .++++.+.+.+.|+..+..+.+.+ ++.+.+.. ....+.|-++... ++. ....+..
T Consensus 165 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~~~~~~~vylSiDiDvlDp~~aPgtgtp~ 244 (306)
T 1pq3_A 165 ISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPV 244 (306)
T ss_dssp SCGGGEEEESCCCCCHHHHHHHHHTTCEEECHHHHHHHCHHHHHHHHHHHHHSSSCCCEEEEEEGGGBCTTTCCSBSSCC
T ss_pred CCcccEEEEEcCCCCHHHHHHHHHcCCeEEEhHHHhhhCHHHHHHHHHHHHhhcCCCeEEEEEecCCcCccccCCCCCCC
Confidence 356788888763 357788888899987554444332 22232322 2235777776521 221 1112235
Q ss_pred CcCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 164 KYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 164 rfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
..|++ ..|+.++++.+... -+++|+..-
T Consensus 245 pgGlt--~~e~~~~l~~l~~~-~~vvg~Div 272 (306)
T 1pq3_A 245 VGGLT--YREGMYIAEEIHNT-GLLSALDLV 272 (306)
T ss_dssp SSCBC--HHHHHHHHHHHHTT-TCEEEEEEE
T ss_pred CCCCC--HHHHHHHHHHHHcC-CCEEEEEEE
Confidence 78999 88998888887543 357777555
No 162
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=31.35 E-value=1.8e+02 Score=25.27 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=49.3
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEe--C-------CCCCHHHHHHHHHcCCcEEE---ecCHHH
Q 015304 67 EPALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYA--N-------PCKPVSHIKYAANVGVNLTT---FDSVEE 132 (409)
Q Consensus 67 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~--g-------p~k~~~~i~~a~~~gv~~~~---vds~~e 132 (409)
...+++.+.+.|. ..+|.|.+|++.+.++|++ -|..+ | ...+.+.++...+.++.++. +.+.++
T Consensus 118 l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad--~Ig~~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA~GGI~t~~d 195 (229)
T 3q58_A 118 IDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIE--FIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPAL 195 (229)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCS--EEECTTTTSSSSCCCSSCCHHHHHHHHTTTCCEEEESSCCSHHH
T ss_pred HHHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCC--EEEecCccCCCCCcCCCCCHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 4678888888886 8999999999999999973 34211 1 01234556666555665432 457888
Q ss_pred HHHHHhHC
Q 015304 133 LHKIRKWH 140 (409)
Q Consensus 133 l~~i~~~~ 140 (409)
+.++.+..
T Consensus 196 ~~~~~~~G 203 (229)
T 3q58_A 196 AANAIEHG 203 (229)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88887653
No 163
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=30.35 E-value=3.7e+02 Score=25.79 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEEE----ee----C-CC-CCCHHHHHHHHHHHHHHHHHHHH----cCCCCCcEEee--cC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAF----HI----G-SA-ATKFAAYRGAIAAAKAVFETAAR----LGNNKMRVLDI--GG 234 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~----H~----g-s~-~~~~~~~~~~i~~~~~~~~~~~~----~g~~~~~~ldi--GG 234 (409)
++.+.++.+.+++.|+.+. +-. |. | +- ..|++-...+++..++.++++++ +|- + ..+++ +-
T Consensus 117 p~~f~~~~~~a~e~GL~l~-~n~n~Fshp~yk~G~alTnPD~~VR~~AI~h~k~~idia~~~G~~LGs-~-~~~~lW~~D 193 (424)
T 3p14_A 117 PRHFEKWVRWAKRHGLGLD-FNPTLFSHEKAKDGLTLAHPDQAIRQFWIDHCIASRKIGEYFGKELET-P-CLTNIWIPD 193 (424)
T ss_dssp GGGGHHHHHHHHHHTCEEE-EECCCSSSGGGTTSCSTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHSS-C-EEEEECCCC
T ss_pred hhhHHHHHHHHHHcCCcee-eccCCCCChhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-eeEEEeCCC
Confidence 5678888888888888887 432 41 2 22 24566667788888888888877 654 3 13343 22
Q ss_pred CCC-cCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 235 GFS-FTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 235 G~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
|+- .+ . ++....+.+.+.|.+.+... .+....++.+||
T Consensus 194 G~kdyp---~-D~~~~~~rl~esL~eI~~~~-~d~~~~r~aIE~ 232 (424)
T 3p14_A 194 GYKDTP---S-DRLTPRKRLKESLDQIFAAE-INEAYNLDAVES 232 (424)
T ss_dssp EESSCC---S-CSHHHHHHHHHHHHHHTCSC-CCTTTEEEEEEC
T ss_pred CCcCCC---C-CHHHHHHHHHHHHHHHHhhc-cCCcCceEEEec
Confidence 433 22 1 45555566677777776532 111234787764
No 164
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=30.12 E-value=1.4e+02 Score=27.21 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=41.1
Q ss_pred cHHHHHHHHHcCC--cEEEcCHHHHHHHHhCCCCCCcEEEe--CCCCCHHHHHHHHHcCCcEE
Q 015304 67 EPALLEALAALGS--NFDCASRSEIEAVLALGVSPDRIIYA--NPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 67 ~~~vl~~l~~~G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~--gp~k~~~~i~~a~~~gv~~~ 125 (409)
..++++.+.+.++ .+|......++.++++|. .|+.. |- ..++.++.+.++|+.++
T Consensus 92 v~pvI~~l~~~~vpiSIDT~~~~Va~aAl~aGa---~iINdVsg~-~d~~m~~v~a~~~~~vV 150 (294)
T 2dqw_A 92 LLPVLEAVLSLGVPVSVDTRKPEVAEEALKLGA---HLLNDVTGL-RDERMVALAARHGVAAV 150 (294)
T ss_dssp HHHHHHHHHTTCSCEEEECSCHHHHHHHHHHTC---SEEECSSCS-CCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHhCCCeEEEECCCHHHHHHHHHhCC---CEEEECCCC-CChHHHHHHHHhCCCEE
Confidence 3556677765564 999999999999999985 46644 33 56778888889998644
No 165
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=29.94 E-value=2.2e+02 Score=24.85 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEeHHHHHHHHHHH----HHhC--CCcceEEecCcCCcHHHHHHHHHcCCcE
Q 015304 15 LTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQM----ISKL--PMIHPHYAVKCNPEPALLEALAALGSNF 81 (409)
Q Consensus 15 ~~~~~~~~~~~~~~~~t~P~~v~d~~~l~~n~~~~----~~~~--~~~~i~yavKan~~~~vl~~l~~~G~g~ 81 (409)
|++-|++||... .. -.+++|+..-...+++. .+.. ++.-++-..|-.....|.+.....|+.+
T Consensus 23 wnpkM~~yIy~~---Rn-gihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g~~y 91 (231)
T 3bbn_B 23 WNPRMSPYISAK---CK-GIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHY 91 (231)
T ss_dssp CCGGGGGGEEEE---ET-TEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHHHHHHTCEE
T ss_pred CCcccccceecc---cC-CcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhCCcc
Confidence 444455555421 24 57899988765554443 3221 2333555556656667777777777633
No 166
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=29.86 E-value=3e+02 Score=25.70 Aligned_cols=124 Identities=10% Similarity=0.086 Sum_probs=78.2
Q ss_pred ccHHHHHHHHHhhcCCCCCccEEEE----eHHHHHHHHHHHHHhCCCcceEEecCcCC------cHHHHHHHHHcCC-cE
Q 015304 13 EELTEFVRSTILKRQEFDEVPFYIL----DLGVVVTLYNQMISKLPMIHPHYAVKCNP------EPALLEALAALGS-NF 81 (409)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~t~P~~v~----d~~~l~~n~~~~~~~~~~~~i~yavKan~------~~~vl~~l~~~G~-g~ 81 (409)
.+.+++.+.-.... +.+- ..+-+ +.....+.+++++++++ .+...+++|. ...+++.|.+.|+ .+
T Consensus 146 ~~~e~~~~~a~~~~-~~Gf-~~iKik~g~~~~~~~e~v~avr~a~g--d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~i 221 (384)
T 2pgw_A 146 ETAEELARDAAVGH-AQGE-RVFYLKVGRGEKLDLEITAAVRGEIG--DARLRLDANEGWSVHDAINMCRKLEKYDIEFI 221 (384)
T ss_dssp SSHHHHHHHHHHHH-HTTC-CEEEEECCSCHHHHHHHHHHHHTTST--TCEEEEECTTCCCHHHHHHHHHHHGGGCCSEE
T ss_pred CCHHHHHHHHHHHH-HcCC-CEEEECcCCCHHHHHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 45666655433332 1232 33333 45667788888998887 4445678886 2467777878887 66
Q ss_pred EE----cCHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCC
Q 015304 82 DC----ASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPK 142 (409)
Q Consensus 82 ~v----aS~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~ 142 (409)
|- .....+..+++. .+ -+|+..+...+.++++.+++.| +..+.++ .+.+..++.+.+..
T Consensus 222 EqP~~~~~~~~~~~l~~~-~~-iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~ 290 (384)
T 2pgw_A 222 EQPTVSWSIPAMAHVREK-VG-IPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEA 290 (384)
T ss_dssp ECCSCTTCHHHHHHHHHH-CS-SCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHhh-CC-CCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHH
Confidence 62 244555555543 12 3588888888999999999876 4556664 67777777766543
No 167
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=29.64 E-value=3.1e+02 Score=25.35 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=48.5
Q ss_pred EeHHHHHHHHHHHHHhCCCcceEEecCcC--------CcHHHHHHHHHcCC-cEEEcCH------------------HH-
Q 015304 37 LDLGVVVTLYNQMISKLPMIHPHYAVKCN--------PEPALLEALAALGS-NFDCASR------------------SE- 88 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~~~~~~~i~yavKan--------~~~~vl~~l~~~G~-g~~vaS~------------------~E- 88 (409)
-+.+.+.+-++++++... +.+..-+... ....+++.+.+.|+ .+.|... -+
T Consensus 109 ~~~~~~~eiv~av~~~v~-~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~ 187 (350)
T 3b0p_A 109 LDLARVREILKAMGEAVR-VPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDW 187 (350)
T ss_dssp GCHHHHHHHHHHHHHHCS-SCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHH
T ss_pred hCHHHHHHHHHHHHHHhC-CceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHH
Confidence 345667777788887652 2222211111 13577888999998 6776541 11
Q ss_pred HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 89 IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 89 ~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
+..+++. ++.-.|+.+|...+.++++.+++ |+..+.+.
T Consensus 188 i~~ik~~-~~~iPVianGgI~s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 188 VHRLKGD-FPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp HHHHHHH-CTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred HHHHHHh-CCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 2222222 21235666676667777777666 66544443
No 168
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=29.29 E-value=18 Score=24.35 Aligned_cols=25 Identities=48% Similarity=0.751 Sum_probs=21.2
Q ss_pred CCcCCCCCcccHHHHHHHHHHcC-CeEE
Q 015304 163 SKYGVDHHPQEIVPLLEAAEASG-LSVV 189 (409)
Q Consensus 163 srfGi~~~~~~~~~~~~~~~~~~-l~l~ 189 (409)
.+||++ .+++..+++++++.| |++.
T Consensus 33 ~kygV~--kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 33 KVYGVE--KQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHCCC--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCC--HHHHHHHHHHHHHCCCeecc
Confidence 789999 999999999998887 4554
No 169
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=28.69 E-value=94 Score=27.12 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=14.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs 197 (409)
.+++.++++.++..+-. .|+.+-.|.
T Consensus 141 ~~~~~~ll~~v~~~~~~-vg~~~D~g~ 166 (264)
T 1yx1_A 141 IEVLERFFRLAERQQLD-LAMTFDIGN 166 (264)
T ss_dssp HHHHHHHHHHHHHTTCS-EEEEEETTG
T ss_pred HHHHHHHHHHHHhcCCC-eEEEEehhh
Confidence 45566666655443334 666665543
No 170
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=28.51 E-value=2.5e+02 Score=25.95 Aligned_cols=93 Identities=8% Similarity=-0.119 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCCcceEEecCcCC------------cHHHHHHHHHcCC-cEEEcC---------------HHHHHHHH
Q 015304 42 VVTLYNQMISKLPMIHPHYAVKCNP------------EPALLEALAALGS-NFDCAS---------------RSEIEAVL 93 (409)
Q Consensus 42 l~~n~~~~~~~~~~~~i~yavKan~------------~~~vl~~l~~~G~-g~~vaS---------------~~E~~~a~ 93 (409)
+.+-+++++++. +..+. +|-++ ...+++.|.+.|+ .++|++ ..-+..++
T Consensus 197 ~~eiv~avr~~v-~~pv~--vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik 273 (340)
T 3gr7_A 197 LGEVIDAVREVW-DGPLF--VRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIR 273 (340)
T ss_dssp HHHHHHHHHHHC-CSCEE--EEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCceE--EEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHH
Confidence 456667777766 32222 23332 3688999999998 888863 11223333
Q ss_pred hCCCCCCcEEEeCCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhH
Q 015304 94 ALGVSPDRIIYANPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKW 139 (409)
Q Consensus 94 ~~G~~~~~Ii~~gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~ 139 (409)
+. ++ -.|+.+|...++++.+.+++.| +..+.+. +.+-..++.+.
T Consensus 274 ~~-~~-iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~~~ 323 (340)
T 3gr7_A 274 RE-AD-IPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAARE 323 (340)
T ss_dssp HH-TT-CCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHH
T ss_pred HH-cC-CcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHHHH
Confidence 32 22 3578888888888888888887 6555543 34444555443
No 171
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=28.42 E-value=2.1e+02 Score=25.73 Aligned_cols=133 Identities=20% Similarity=0.196 Sum_probs=74.0
Q ss_pred cHHHHHHHHHcCC-cEEEcC---H-------HHHHHHHhCC-CCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec------
Q 015304 67 EPALLEALAALGS-NFDCAS---R-------SEIEAVLALG-VSPDRIIYANPCKPVSHIKYAANVGVNLTTFD------ 128 (409)
Q Consensus 67 ~~~vl~~l~~~G~-g~~vaS---~-------~E~~~a~~~G-~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd------ 128 (409)
-..+++.|.+.|+ .+++.| . .+.+.++..- .+.-++....+ +.+.++.|++.|+..+.++
T Consensus 28 k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~--n~~~i~~a~~~G~~~V~i~~~~S~~ 105 (295)
T 1ydn_A 28 KIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVP--NMKGYEAAAAAHADEIAVFISASEG 105 (295)
T ss_dssp HHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECS--SHHHHHHHHHTTCSEEEEEEESCHH
T ss_pred HHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHCCCCEEEEEEecCHH
Confidence 3578888888998 788875 1 2344444431 12235533344 5789999999999766555
Q ss_pred ------------CHHHHHHHHhHCCCCeEEEE--EecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 129 ------------SVEELHKIRKWHPKCDLLIR--IKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 129 ------------s~~el~~i~~~~~~~~v~lR--v~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
+++.+....+.+++..+.++ |....+. ...+| .+ ++++.++++.+.+.|.....|.--
T Consensus 106 h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~----e~~~~--~~--~~~~~~~~~~~~~~G~d~i~l~Dt 177 (295)
T 1ydn_A 106 FSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVEC----PYDGP--VT--PQAVASVTEQLFSLGCHEVSLGDT 177 (295)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEE----TTTEE--CC--HHHHHHHHHHHHHHTCSEEEEEET
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecC----CcCCC--CC--HHHHHHHHHHHHhcCCCEEEecCC
Confidence 33333333333333334444 3320000 00111 23 778888888877778877766644
Q ss_pred eCCCCCCHHHHHHHHHH
Q 015304 195 IGSAATKFAAYRGAIAA 211 (409)
Q Consensus 195 ~gs~~~~~~~~~~~i~~ 211 (409)
.|. ..+....+.++.
T Consensus 178 ~G~--~~P~~~~~lv~~ 192 (295)
T 1ydn_A 178 IGR--GTPDTVAAMLDA 192 (295)
T ss_dssp TSC--CCHHHHHHHHHH
T ss_pred CCC--cCHHHHHHHHHH
Confidence 443 456655444433
No 172
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=28.29 E-value=88 Score=23.55 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecCHHHHHH
Q 015304 92 VLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHK 135 (409)
Q Consensus 92 a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds~~el~~ 135 (409)
+.+.|++++++++-|- +..+++.|.+.|+..+.+.+..+...
T Consensus 84 ~~~~~~~~~~~~~vgD--~~~di~~a~~~G~~~i~~~~~~~~~~ 125 (137)
T 2pr7_A 84 ADAIDLPMRDCVLVDD--SILNVRGAVEAGLVGVYYQQFDRAVV 125 (137)
T ss_dssp HHHTTCCGGGEEEEES--CHHHHHHHHHHTCEEEECSCHHHHHH
T ss_pred HHHcCCCcccEEEEcC--CHHHHHHHHHCCCEEEEeCChHHHHH
Confidence 4567888889999886 45689999999997677777666543
No 173
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=28.24 E-value=2.8e+02 Score=25.97 Aligned_cols=104 Identities=12% Similarity=0.103 Sum_probs=70.9
Q ss_pred eHHHHHHHHHHHHHhCCCcceEEecCcCC------cHHHHHHHHHcCC-cEE--Ec--CHHHHHHHHh-CCCCCCcEEEe
Q 015304 38 DLGVVVTLYNQMISKLPMIHPHYAVKCNP------EPALLEALAALGS-NFD--CA--SRSEIEAVLA-LGVSPDRIIYA 105 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i~yavKan~------~~~vl~~l~~~G~-g~~--va--S~~E~~~a~~-~G~~~~~Ii~~ 105 (409)
+.+.-.+.++++|++++. .+-..+.+|. ...+++.|.+.|+ .+| +. ....+..+++ .++ +|...
T Consensus 176 ~~~~d~~~v~avR~a~g~-~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~i---PIa~d 251 (383)
T 3i4k_A 176 DPAEDTRRVAELAREVGD-RVSLRIDINARWDRRTALHYLPILAEAGVELFEQPTPADDLETLREITRRTNV---SVMAD 251 (383)
T ss_dssp CHHHHHHHHHHHHHTTTT-TSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEESCSCTTCHHHHHHHHHHHCC---EEEES
T ss_pred CHHHHHHHHHHHHHHcCC-CCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECCCChhhHHHHHHHHhhCCC---CEEec
Confidence 556677788999999873 2334578887 2457788888887 677 22 2444555544 343 57777
Q ss_pred CCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCCeE
Q 015304 106 NPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKCDL 145 (409)
Q Consensus 106 gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~~v 145 (409)
....+.++++.+++.| +..+++| .+.+..++.+.+....+
T Consensus 252 E~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi 297 (383)
T 3i4k_A 252 ESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGL 297 (383)
T ss_dssp TTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTC
T ss_pred CccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCC
Confidence 7888889999988766 4566776 68888888776544433
No 174
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=28.18 E-value=2.2e+02 Score=27.14 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEE--Ec--CHHHHHHHHhCCCCCCcEEEeC
Q 015304 39 LGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFD--CA--SRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~--va--S~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+.-.+.++++|++++ ++.+ .+.+|. ...+++.|.+.|+ .+| +. ....+..+++. .+ -.|....
T Consensus 184 ~~~d~~~v~avR~a~G~d~~l--~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~-~~-iPIa~dE 259 (412)
T 4e4u_A 184 LDRCELFCRRVREAVGSKADL--LFGTHGQMVPSSAIRLAKRLEKYDPLWFEEPVPPGQEEAIAQVAKH-TS-IPIATGE 259 (412)
T ss_dssp HHHHHHHHHHHHHHHTTSSEE--EECCCSCBCHHHHHHHHHHHGGGCCSEEECCSCSSCHHHHHHHHHT-CS-SCEEECT
T ss_pred HHHHHHHHHHHHHHhCCCCeE--EEECCCCCCHHHHHHHHHHhhhcCCcEEECCCChhhHHHHHHHHhh-CC-CCEEecC
Confidence 4556678888888885 4544 478997 2456777888887 677 22 56666666654 22 3577777
Q ss_pred CCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCC
Q 015304 107 PCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKC 143 (409)
Q Consensus 107 p~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~ 143 (409)
...+..+++.+++.| +..+++| .+.+..++.+.+...
T Consensus 260 ~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~kia~~A~~~ 302 (412)
T 4e4u_A 260 RLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKIATLAEVH 302 (412)
T ss_dssp TCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 777888888888876 4455554 678888887765433
No 175
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Probab=27.98 E-value=2.3e+02 Score=26.89 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEEE--cCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 41 VVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFDC--ASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 41 ~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~v--aS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
...+.++++|++++ ++.+ .+.+|. ...+++.|.+.|+ .+|. .....+..+++. .+ -+|.......+
T Consensus 198 ~~~e~v~avR~avG~d~~l--~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P~~d~~~~~~l~~~-~~-iPIa~dE~~~~ 273 (409)
T 3go2_A 198 NLRAHLEALRDGAGPDVEI--LLDLNFNAKPEGYLKILRELADFDLFWVEIDSYSPQGLAYVRNH-SP-HPISSCETLFG 273 (409)
T ss_dssp HHHHHHHHHHHHHCTTSEE--EEECTTCSCHHHHHHHHHHTTTSCCSEEECCCSCHHHHHHHHHT-CS-SCEEECTTCCH
T ss_pred HHHHHHHHHHHHhCCCCEE--EEECCCCCCHHHHHHHHHHHhhcCCeEEEeCcCCHHHHHHHHhh-CC-CCEEeCCCcCC
Confidence 34567888888884 5544 478887 2456677777787 7774 355666666654 22 35787777888
Q ss_pred HHHHHHHHHcC-CcEEEec----CHHHHHHHHhHCCCC
Q 015304 111 VSHIKYAANVG-VNLTTFD----SVEELHKIRKWHPKC 143 (409)
Q Consensus 111 ~~~i~~a~~~g-v~~~~vd----s~~el~~i~~~~~~~ 143 (409)
.++++.+++.| +..+++| .+.+..++.+.+...
T Consensus 274 ~~~~~~~i~~~~~d~v~~k~~~GGit~~~~ia~~A~~~ 311 (409)
T 3go2_A 274 IREFKPFFDANAVDVAIVDTIWNGVWQSMKIAAFADAH 311 (409)
T ss_dssp HHHHHHHHHTTCCSEEEECHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 89999999876 4566665 677777777765433
No 176
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3
Probab=27.73 E-value=3e+02 Score=23.89 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=38.2
Q ss_pred HHHHHHHcCCcEEEcC-----HHH-HHHHHhCCCCCCcEEEeCCC--CCHHHHHHHHHcCCcEEEec
Q 015304 70 LLEALAALGSNFDCAS-----RSE-IEAVLALGVSPDRIIYANPC--KPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 70 vl~~l~~~G~g~~vaS-----~~E-~~~a~~~G~~~~~Ii~~gp~--k~~~~i~~a~~~gv~~~~vd 128 (409)
.+++..+.|.-+-+-+ ..| ++.+.+.|+++.++++.+.. .+.+.++.+++.|+. +.++
T Consensus 143 ~~~~a~~~~~pv~iH~~~~~~~~~~~~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~-i~~~ 208 (291)
T 1bf6_A 143 AALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAY-VQFD 208 (291)
T ss_dssp HHHHHHHHCCCEEEECGGGCSHHHHHHHHHHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCE-EEEC
T ss_pred HHHHHHHHCCeEEEeCCCCCChHHHHHHHHHcCCCchhEEEECCCCCCCHHHHHHHHHCCCE-EEEc
Confidence 5555566787665544 224 44566678877786665542 467888888999985 6676
No 177
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=27.50 E-value=1.2e+02 Score=29.27 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=33.7
Q ss_pred eHHHHHHHHHHHHHhCC-CcceEEecCcCC---cHHHHHHHHHcCC---cEEEcCH
Q 015304 38 DLGVVVTLYNQMISKLP-MIHPHYAVKCNP---EPALLEALAALGS---NFDCASR 86 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~-~~~i~yavKan~---~~~vl~~l~~~G~---g~~vaS~ 86 (409)
+.+.+.+-++.+++.++ .-..-..+-+|+ ..+.++.|.+.|+ .+.+-|.
T Consensus 119 ~~~~l~~ll~~i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~ 174 (457)
T 1olt_A 119 NKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDF 174 (457)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccC
Confidence 56788899999988775 112334455677 5789999999986 3444444
No 178
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=27.15 E-value=3.4e+02 Score=24.38 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=30.9
Q ss_pred CcceEEecCcCCcHHHHHHHHHcCCcEEEcC---------------------HH----HHHHHHhCCCCCCcEEEe
Q 015304 55 MIHPHYAVKCNPEPALLEALAALGSNFDCAS---------------------RS----EIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 55 ~~~i~yavKan~~~~vl~~l~~~G~g~~vaS---------------------~~----E~~~a~~~G~~~~~Ii~~ 105 (409)
+..+...+-+-..+.+++.+++.|+.+-+.. .. -++.+.++|+++++|++.
T Consensus 110 Ga~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilD 185 (282)
T 1aj0_A 110 GAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLD 185 (282)
T ss_dssp TCCEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEe
Confidence 3455566655456677777777777555432 11 133456677777777776
No 179
>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A
Probab=27.02 E-value=84 Score=27.18 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCC-cEEEcC--HHHHHHHHhCCCCCCcEEEeCCCCCH-HHHHHHHHcCCcEEEe
Q 015304 68 PALLEALAALGS-NFDCAS--RSEIEAVLALGVSPDRIIYANPCKPV-SHIKYAANVGVNLTTF 127 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS--~~E~~~a~~~G~~~~~Ii~~gp~k~~-~~i~~a~~~gv~~~~v 127 (409)
..+++...+.|. |+-|+. +.|+..+++. .+. -+++++..... ..++.|++.|...+++
T Consensus 118 ~~~a~~a~~~G~~GvV~sat~~~e~~~ir~~-~~~-f~~v~pGI~~~g~~~~~a~~~Gad~iVv 179 (215)
T 3ve9_A 118 PYLREVARRVNPKGFVAPATRPSMISRVKGD-FPD-KLVISPGVGTQGAKPGIALCHGADYEIV 179 (215)
T ss_dssp HHHHHHHHHHCCSEEECCTTSHHHHHHHHHH-CTT-SEEEECCTTSTTCCTTHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCceeeCCCCHHHHHHHHHh-CCC-cEEEcCCCCcCcCCHHHHHHcCCCEEEe
Confidence 567777778898 776664 7889888875 233 56666543321 1567788888876655
No 180
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=26.92 E-value=3e+02 Score=23.65 Aligned_cols=51 Identities=4% Similarity=0.066 Sum_probs=24.7
Q ss_pred CHHHHHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcE-EEecCHHHHHHHHhH
Q 015304 85 SRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL-TTFDSVEELHKIRKW 139 (409)
Q Consensus 85 S~~E~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~-~~vds~~el~~i~~~ 139 (409)
+.++++.+.++|. +.+..+ ..+.+-++.+.+.|... +-+.+.+|+....+.
T Consensus 78 ~~d~~~~A~~aGA---d~v~~p-~~d~~v~~~ar~~g~~~i~Gv~t~~e~~~A~~~ 129 (224)
T 1vhc_A 78 TAEQVVLAKSSGA---DFVVTP-GLNPKIVKLCQDLNFPITPGVNNPMAIEIALEM 129 (224)
T ss_dssp SHHHHHHHHHHTC---SEEECS-SCCHHHHHHHHHTTCCEECEECSHHHHHHHHHT
T ss_pred eHHHHHHHHHCCC---CEEEEC-CCCHHHHHHHHHhCCCEEeccCCHHHHHHHHHC
Confidence 4556666666653 233333 33444345555555432 235555555554443
No 181
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=26.51 E-value=1.4e+02 Score=26.12 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=44.4
Q ss_pred HHHHHHHcCCcEEEe------cCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCcCCCCCcccHHHHHHHHHHcCC
Q 015304 113 HIKYAANVGVNLTTF------DSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGL 186 (409)
Q Consensus 113 ~i~~a~~~gv~~~~v------ds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srfGi~~~~~~~~~~~~~~~~~~l 186 (409)
.+..+.+.|+..+-+ .+++|+..+.+.+.+..+. +.| | =||+ .+.+.++++.+.+.|+
T Consensus 150 Aiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~--lEP---------T---GGId--l~N~~~I~~i~l~aGv 213 (249)
T 3m0z_A 150 AIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFW--LEP---------T---GGID--LENYSEILKIALDAGV 213 (249)
T ss_dssp HHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCE--EEE---------B---SSCC--TTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCce--ECC---------C---CCcc--HhhHHHHHHHHHHcCC
Confidence 345556778763322 7888998888776544442 343 1 2888 8999999999888887
Q ss_pred eEEEEEEe
Q 015304 187 SVVGVAFH 194 (409)
Q Consensus 187 ~l~Glh~H 194 (409)
+.+--|.+
T Consensus 214 ~~viPHIY 221 (249)
T 3m0z_A 214 SKIIPHIY 221 (249)
T ss_dssp SCBCCBCC
T ss_pred Ceeccccc
Confidence 76555444
No 182
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=26.44 E-value=1.6e+02 Score=26.55 Aligned_cols=95 Identities=11% Similarity=0.165 Sum_probs=56.6
Q ss_pred CCCCcEEEeCCC-CCHHHHHHHHHcCCcEEEecCHHH------HHHHHhHCC--CCeEEEEEecCC-CCCC--CCCCCCC
Q 015304 97 VSPDRIIYANPC-KPVSHIKYAANVGVNLTTFDSVEE------LHKIRKWHP--KCDLLIRIKPPD-DSGA--KHPLDSK 164 (409)
Q Consensus 97 ~~~~~Ii~~gp~-k~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~~--~~~v~lRv~~~~-~~~~--~~~~~sr 164 (409)
++++++++.|.- .++++.+.+.+.|+..+..+.+.+ ++.+.+..+ ...+.|-++... ++.. ...+...
T Consensus 164 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~l~~~~~~~~~vylSiDiDvlDp~~aPgtgtp~p 243 (299)
T 2cev_A 164 IKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVI 243 (299)
T ss_dssp SCGGGEEEEEECBCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCCCSSCCS
T ss_pred CCccceEEEECCCCCHHHHHHHHHcCCeEEEHHHHhhcCHHHHHHHHHHHhccCCCeEEEEEccCccChhhcCCCCCCCC
Confidence 455788877652 356788888889997666555443 222222222 346777776521 2211 1122358
Q ss_pred cCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 165 YGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
.|++ ..|+.++++.+... .+++|+..-
T Consensus 244 gGlt--~~e~~~~l~~l~~~-~~vvg~Div 270 (299)
T 2cev_A 244 GGLT--YRESHLAMEMLAEA-QIITSAEFV 270 (299)
T ss_dssp SCBC--HHHHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCCC--HHHHHHHHHHHhcC-CCEEEEEEE
Confidence 8999 89999998887543 357776554
No 183
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=26.24 E-value=2.1e+02 Score=27.15 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEEE--c--CHHHHHHHHhCCCCCCcEEEeCC
Q 015304 40 GVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFDC--A--SRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 40 ~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~v--a--S~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
+.-.+.++++|++++ ++.++ +.+|. ...+++.|.+.|+ .+|- . ....+..+++. .+ -+|.....
T Consensus 162 ~~d~e~v~avR~avG~d~~L~--vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~-~~-iPIa~dE~ 237 (405)
T 3rr1_A 162 DAAVARVAEIRSAFGNTVEFG--LDFHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAETYARLAAH-TH-LPIAAGER 237 (405)
T ss_dssp HHHHHHHHHHHHTTGGGSEEE--EECCSCBCHHHHHHHHHHHGGGCCSCEECSSCCSSTHHHHHHHTT-CS-SCEEECTT
T ss_pred HHHHHHHHHHHHHhCCCceEE--EECCCCCCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhc-CC-CCEEecCC
Confidence 445677888888884 55554 78886 3456788888887 7772 2 45566655554 22 36787778
Q ss_pred CCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCCe
Q 015304 108 CKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKCD 144 (409)
Q Consensus 108 ~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~~ 144 (409)
..+..+++.+++.| +..+++| -+.+..++.+.+....
T Consensus 238 i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~g 280 (405)
T 3rr1_A 238 MFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYD 280 (405)
T ss_dssp CCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcC
Confidence 88999999998765 4556665 4788888887765443
No 184
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=26.14 E-value=1.7e+02 Score=27.43 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCcceEEecCcCC---------------cHHHHHHHHHcCC-cEEEcCHH---H-HHHHHhCCCCCC
Q 015304 41 VVVTLYNQMISKLPMIHPHYAVKCNP---------------EPALLEALAALGS-NFDCASRS---E-IEAVLALGVSPD 100 (409)
Q Consensus 41 ~l~~n~~~~~~~~~~~~i~yavKan~---------------~~~vl~~l~~~G~-g~~vaS~~---E-~~~a~~~G~~~~ 100 (409)
-+.+-+++++++.+.-.+. +|-++ ...+++.|.+.|+ .++|+... + +..+++. ++ -
T Consensus 205 f~~eiv~aVr~~vg~~~v~--vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~-~~-i 280 (362)
T 4ab4_A 205 LLLEVTDAAIEVWGAQRVG--VHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEA-FG-G 280 (362)
T ss_dssp HHHHHHHHHHHHHCGGGEE--EEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHH-HC-S
T ss_pred HHHHHHHHHHHhcCCCceE--EEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-CC-C
Confidence 3456666777776522232 33332 2467888999998 78886531 1 2222222 22 2
Q ss_pred cEEEeCCCCCHHHHHHHHHcC-CcEEEe
Q 015304 101 RIIYANPCKPVSHIKYAANVG-VNLTTF 127 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~g-v~~~~v 127 (409)
.++.+|.. ++++.+.+++.| +..+.+
T Consensus 281 Pvi~~Ggi-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 281 PYIVNERF-DKASANAALASGKADAVAF 307 (362)
T ss_dssp CEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred CEEEeCCC-CHHHHHHHHHcCCccEEEE
Confidence 57888887 999999999887 555544
No 185
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=25.93 E-value=34 Score=24.42 Aligned_cols=14 Identities=21% Similarity=0.802 Sum_probs=11.7
Q ss_pred CCCCCCCCEEEEcC
Q 015304 366 LPELEVTDWLVFSE 379 (409)
Q Consensus 366 lp~l~~GD~l~~~~ 379 (409)
+|+.++||||.++-
T Consensus 33 v~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 33 MPDTKPGDWVIVHT 46 (75)
T ss_dssp STTCCTTCEEEEET
T ss_pred eCCCCCCCEEEEec
Confidence 47789999999875
No 186
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=25.93 E-value=2.3e+02 Score=26.81 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=13.3
Q ss_pred ccHHHHHHHHHHcCCeEE
Q 015304 172 QEIVPLLEAAEASGLSVV 189 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~ 189 (409)
.++.++.+.++..++.+.
T Consensus 279 t~~~~ia~~A~~~gi~~~ 296 (393)
T 4dwd_A 279 TGMMQCAALAHAHGVEFV 296 (393)
T ss_dssp HHHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHHHHHHcCCEEe
Confidence 467778888888888764
No 187
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=25.88 E-value=1.4e+02 Score=27.52 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=49.6
Q ss_pred CCCCccEEEEeHHHHHHHHHHHHHhC---CC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCH------HH-HHHHHhCC
Q 015304 28 EFDEVPFYILDLGVVVTLYNQMISKL---PM-IHPHYAVKCNPEPALLEALAALGSNFDCASR------SE-IEAVLALG 96 (409)
Q Consensus 28 ~~~t~P~~v~d~~~l~~n~~~~~~~~---~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~------~E-~~~a~~~G 96 (409)
..+- |+-|.|...-+.+-+.+++++ .+ --+..++-....+.+++.+.+.|+.+-+.+. .| ++.+.++|
T Consensus 120 ~~~v-plsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~G 198 (310)
T 2h9a_B 120 AIDV-PLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKDNYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEMN 198 (310)
T ss_dssp HCSS-CEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTT
T ss_pred hCCc-eEEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCCccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHCC
Confidence 3466 987735522222323333222 11 1256677666688999999999997776663 22 34566789
Q ss_pred CCCCcEEEeCC
Q 015304 97 VSPDRIIYANP 107 (409)
Q Consensus 97 ~~~~~Ii~~gp 107 (409)
+++++|++...
T Consensus 199 i~~e~IilDPg 209 (310)
T 2h9a_B 199 LAPNRIIMDPL 209 (310)
T ss_dssp CCGGGEEEECC
T ss_pred CChhhEEEeCC
Confidence 99999998754
No 188
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=25.87 E-value=2e+02 Score=27.12 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEcCH---------------HHHHHHHhCCCCCCcEEEeC
Q 015304 43 VTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCASR---------------SEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 43 ~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS~---------------~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+.++++++..+ . -..+|--..+..++.+.+.|+ ++.|+.- .|+..+ .+ ..|+.+|
T Consensus 214 ~~~i~~i~~~~~-~--Pv~vkgv~t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~--~~---~pVia~G 285 (380)
T 1p4c_A 214 WEALRWLRDLWP-H--KLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAK--TG---KPVLIDS 285 (380)
T ss_dssp HHHHHHHHHHCC-S--EEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHH--HC---SCEEECS
T ss_pred HHHHHHHHHhcC-C--CEEEEecCcHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHH--cC---CeEEEEC
Confidence 355566666553 1 122343345667777777777 6666331 222221 12 1566667
Q ss_pred CCCCHHHHHHHHHcCCcEEEec
Q 015304 107 PCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 107 p~k~~~~i~~a~~~gv~~~~vd 128 (409)
...+.+++..++..|+..+.+.
T Consensus 286 GI~~~~dv~kal~~GAdaV~iG 307 (380)
T 1p4c_A 286 GFRRGSDIVKALALGAEAVLLG 307 (380)
T ss_dssp SCCSHHHHHHHHHTTCSCEEES
T ss_pred CCCCHHHHHHHHHhCCcHhheh
Confidence 6667777777766666533333
No 189
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=25.60 E-value=2e+02 Score=26.31 Aligned_cols=94 Identities=12% Similarity=0.121 Sum_probs=56.4
Q ss_pred CCCcEEEeCCC-CCHHHHHHHHHcCCcEEEecCHHH------HHHHHhHC---CCCeEEEEEecCC-CCC--CCCCCCCC
Q 015304 98 SPDRIIYANPC-KPVSHIKYAANVGVNLTTFDSVEE------LHKIRKWH---PKCDLLIRIKPPD-DSG--AKHPLDSK 164 (409)
Q Consensus 98 ~~~~Ii~~gp~-k~~~~i~~a~~~gv~~~~vds~~e------l~~i~~~~---~~~~v~lRv~~~~-~~~--~~~~~~sr 164 (409)
+++++++.|.- .++++.+.+.+.|+..+..+.+.+ ++.+.+.. ....+.|-++... ++. ....+...
T Consensus 170 ~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~~~~~~~vylSiDiDvLDpa~aPgtgtp~p 249 (322)
T 2aeb_A 170 SAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVV 249 (322)
T ss_dssp CGGGEEEEEECCCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHSSSCCCEEEEEEGGGBCTTTCCSBSSCCS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHcCCEEEEHHHHHhhCHHHHHHHHHHHHhhcCCCeEEEEEecCcCCccccCCCCCCCC
Confidence 45688877652 367888888899997666555433 22333322 2335777666521 221 11123368
Q ss_pred cCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 165 YGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 165 fGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
.|++ ..|+.++++.+... -+++|+..=
T Consensus 250 gGlt--~~e~~~~l~~l~~~-~~vvg~Div 276 (322)
T 2aeb_A 250 GGLT--YREGLYITEEIYKT-GLLSGLDIM 276 (322)
T ss_dssp SCBC--HHHHHHHHHHHHHH-SCEEEEEEE
T ss_pred CCCC--HHHHHHHHHHHHcc-CCEEEEEEE
Confidence 8999 89999999887543 247776554
No 190
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=25.58 E-value=3.6e+02 Score=24.00 Aligned_cols=13 Identities=8% Similarity=0.025 Sum_probs=6.0
Q ss_pred eHHHHHHHHHHHH
Q 015304 38 DLGVVVTLYNQMI 50 (409)
Q Consensus 38 d~~~l~~n~~~~~ 50 (409)
+.+...+..+.+.
T Consensus 109 ~~~~~~~~a~~~~ 121 (311)
T 1ep3_A 109 EEADYVAVCAKIG 121 (311)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 4444444444444
No 191
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=25.32 E-value=2.4e+02 Score=23.80 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=48.1
Q ss_pred EEEEeHHHHHHHHHHHHHhCCC-cceEEecCcCCcHHHHHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHH
Q 015304 34 FYILDLGVVVTLYNQMISKLPM-IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVS 112 (409)
Q Consensus 34 ~~v~d~~~l~~n~~~~~~~~~~-~~i~yavKan~~~~vl~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~ 112 (409)
+|++|..++...++.+.+.=|+ ++++ |-+..-+.+.+ . . .-.|+..|-..+++
T Consensus 109 ~FliDs~al~~~~~~I~~~kPD~iEiL------Pg~v~p~~I~~------------------v-~-~~PiIaGGlI~t~e 162 (188)
T 1vkf_A 109 FFALDSKAVERGIEQIETLGVDVVEVL------PGAVAPKVARK------------------I-P-GRTVIAAGLVETEE 162 (188)
T ss_dssp EECCSHHHHHHHHHHHHHHTCSEEEEE------SGGGHHHHHTT------------------S-T-TSEEEEESCCCSHH
T ss_pred EEEEEeHHHhhhhhhccccCCCeEeec------CCCchHHHHHH------------------h-c-CCCEEEECCcCCHH
Confidence 6889998999998888877776 4555 21111122211 1 2 24788889999999
Q ss_pred HHHHHHHcCCcEEEecCHH
Q 015304 113 HIKYAANVGVNLTTFDSVE 131 (409)
Q Consensus 113 ~i~~a~~~gv~~~~vds~~ 131 (409)
+++. ++.|+..++..+.+
T Consensus 163 dv~~-l~aGA~aIsTs~~~ 180 (188)
T 1vkf_A 163 EARE-ILKHVSAISTSSRI 180 (188)
T ss_dssp HHHH-HTTTSSEEEECCHH
T ss_pred HHHH-HHCCCeEEEeCCHH
Confidence 9999 99999866555543
No 192
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=25.25 E-value=75 Score=29.17 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=34.7
Q ss_pred HHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCHH----------HHHHHHHcCCcEEEec
Q 015304 71 LEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVS----------HIKYAANVGVNLTTFD 128 (409)
Q Consensus 71 l~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~~----------~i~~a~~~gv~~~~vd 128 (409)
++...+.|+.--|+|..|+..+++. .+++-+++++...... .++.|++.|...+++.
T Consensus 164 A~~a~~~G~dGvV~s~~E~~~IR~~-~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvG 230 (303)
T 3ru6_A 164 SKISYENGLDGMVCSVFESKKIKEH-TSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVG 230 (303)
T ss_dssp HHHHHHTTCSEEECCTTTHHHHHHH-SCTTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEEC
T ss_pred HHHHHHcCCCEEEECHHHHHHHHHh-CCCccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEC
Confidence 3344567885567789999888775 3445566665433210 3556677777655543
No 193
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=25.10 E-value=1e+02 Score=29.33 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCCC--CCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGSA--ATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs~--~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
.+++.++-+.+++.||++.++.+-.... ........+.++.+++.++.+.++|.
T Consensus 63 ~~~i~~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~~r~~~ie~~k~~i~~aa~lGi 118 (386)
T 3bdk_A 63 LENILELKKMVEEAGLEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGI 118 (386)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCCCCHHHHTTCTTHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccccccCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 4677777777888899999886411110 01122355678888888999999988
No 194
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=24.85 E-value=3.3e+02 Score=24.59 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHcCCeEEEEEEeeCCC----CCCHHHHHHHHHHHHHHHHHHHHcCCCC--CcEEeecCCCCcCCCCCCC
Q 015304 172 QEIVPLLEAAEASGLSVVGVAFHIGSA----ATKFAAYRGAIAAAKAVFETAARLGNNK--MRVLDIGGGFSFTNSNTKS 245 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~Glh~H~gs~----~~~~~~~~~~i~~~~~~~~~~~~~g~~~--~~~ldiGGG~~~~~~~~~~ 245 (409)
+++.++.+.+++.++.+ .+|..-. ..+++.+...++.+...++.++.+|. + .-+++.|+.++.
T Consensus 103 ~~~~~~~~~~~~~gi~i---~~H~py~iNL~S~~~e~re~Si~~l~~~l~~a~~lG~-~~a~~v~HpG~~~~~------- 171 (301)
T 2j6v_A 103 EELARLGALARAFGQRL---SMHPGQYVNPGSPDPEVVERSLAELRYSARLLSLLGA-EDGVLVLHLGGAYGE------- 171 (301)
T ss_dssp HHHHHHHHHHHHTTCEE---EECCCTTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTC-TTCEEEEECCCCTTC-------
T ss_pred HHHHHHHHHHHHcCCeE---EEeCchhhcCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCCEEEECCCcCCCC-------
Confidence 45555556667778864 4686432 13556667788888888899999997 4 233454543221
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 246 FQEAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 246 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
-++..+.+.+.|.+ .... ..++.+|+
T Consensus 172 ~e~~~~r~~e~l~~-~~~a-----~~~l~lEn 197 (301)
T 2j6v_A 172 KGKALRRFVENLRG-EEEV-----LRYLALEN 197 (301)
T ss_dssp HHHHHHHHHHHHTT-CHHH-----HHHEEEEC
T ss_pred HHHHHHHHHHHHhH-HHhh-----cceEEEEe
Confidence 24444455555554 3211 12477775
No 195
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=24.81 E-value=1.8e+02 Score=27.58 Aligned_cols=100 Identities=6% Similarity=0.050 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEEE--c--CHHHHHHHHhCCCCCCcEEEeC
Q 015304 39 LGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFDC--A--SRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~v--a--S~~E~~~a~~~G~~~~~Ii~~g 106 (409)
++...+.++++|++++ ++.+ .+.+|. ...+++.|.+.|+ .+|- . ....+..+++. .+ -.|....
T Consensus 184 ~~~d~~~v~avR~a~G~d~~l--~vDan~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~~~~~~~~l~~~-~~-iPIa~dE 259 (401)
T 3sbf_A 184 MDNTLTMFKSLREKYGNQFHI--LHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQ-SS-VSLGLGE 259 (401)
T ss_dssp HHHHHHHHHHHHHHHTTSSEE--EEECTTCSCHHHHHHHHHHHGGGCCSCEECSSCTTCGGGHHHHHTT-CC-CCEEECT
T ss_pred HHHHHHHHHHHHHHcCCCCEE--EEECCCCCCHHHHHHHHHHHHhcCCCEEECCCChhHHHHHHHHHhh-CC-CCEEeCC
Confidence 3455677888899885 5544 478887 3466777878887 7772 2 34455555543 22 3578777
Q ss_pred CCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCC
Q 015304 107 PCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPK 142 (409)
Q Consensus 107 p~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~ 142 (409)
...+..+++.+++.| +..+++| .+.+..++.+.+..
T Consensus 260 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~~A~~ 301 (401)
T 3sbf_A 260 LFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQN 301 (401)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 888899999999876 4556665 68888888776543
No 196
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=24.75 E-value=2.7e+02 Score=26.12 Aligned_cols=100 Identities=9% Similarity=0.022 Sum_probs=63.1
Q ss_pred eHHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEEE--c--CHHHHHHHHhCCCCCCcEEEe
Q 015304 38 DLGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFDC--A--SRSEIEAVLALGVSPDRIIYA 105 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~v--a--S~~E~~~a~~~G~~~~~Ii~~ 105 (409)
+.....+.+++++++++ ++.+ .+.+|. ...+++.|.+.|+ .+|- . ....+..+++. .+ -+|...
T Consensus 189 ~~~~~~e~v~avR~avg~d~~l--~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~~-~~-iPIa~d 264 (393)
T 2og9_A 189 DGALDIARVTAVRKHLGDAVPL--MVDANQQWDRPTAQRMCRIFEPFNLVWIEEPLDAYDHEGHAALALQ-FD-TPIATG 264 (393)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCE--EEECTTCCCHHHHHHHHHHHGGGCCSCEECCSCTTCHHHHHHHHHH-CS-SCEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCEE--EEECCCCCCHHHHHHHHHHHHhhCCCEEECCCCcccHHHHHHHHHh-CC-CCEEeC
Confidence 34556777888888874 4555 467775 2456677777787 6662 1 44455554443 11 257777
Q ss_pred CCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCC
Q 015304 106 NPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHP 141 (409)
Q Consensus 106 gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~ 141 (409)
....+.++++.+++.| +..++++ .+.+..++.+.+.
T Consensus 265 E~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~ 306 (393)
T 2og9_A 265 EMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAE 306 (393)
T ss_dssp TTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHH
Confidence 7777888888888776 3455554 6677777766653
No 197
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=24.72 E-value=1.1e+02 Score=27.94 Aligned_cols=84 Identities=12% Similarity=0.204 Sum_probs=43.0
Q ss_pred cCHHHHH-HHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEecC--HHHHHHHHhHCCCCeEEEEEecCCCCCCCCC
Q 015304 84 ASRSEIE-AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDS--VEELHKIRKWHPKCDLLIRIKPPDDSGAKHP 160 (409)
Q Consensus 84 aS~~E~~-~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vds--~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~ 160 (409)
.|..++. .+++.. +..+|..- +.+.+++++|++.|+..+.+|+ .+++..+.+..+ .++.+-++.
T Consensus 183 G~i~~Av~~ar~~~-~~~~IeVE--v~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~-~~v~ieaSG--------- 249 (287)
T 3tqv_A 183 GGIAKAVTKAKKLD-SNKVVEVE--VTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIAR-GKVALEVSG--------- 249 (287)
T ss_dssp -CHHHHHHHHHHHC-TTSCEEEE--ESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT-TTCEEEEES---------
T ss_pred CCHHHHHHHHHhhC-CCCcEEEE--eCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhc-CCceEEEEC---------
Confidence 3555543 344443 22345542 2356777778887777666664 455554444322 234444432
Q ss_pred CCCCcCCCCCcccHHHHHHHHHHcCCeEEEE
Q 015304 161 LDSKYGVDHHPQEIVPLLEAAEASGLSVVGV 191 (409)
Q Consensus 161 ~~srfGi~~~~~~~~~~~~~~~~~~l~l~Gl 191 (409)
|++ ++.+.++. ..|+.+.++
T Consensus 250 -----GIt--~~~i~~~a----~tGVD~Isv 269 (287)
T 3tqv_A 250 -----NID--RNSIVAIA----KTGVDFISV 269 (287)
T ss_dssp -----SCC--TTTHHHHH----TTTCSEEEC
T ss_pred -----CCC--HHHHHHHH----HcCCCEEEE
Confidence 666 67765543 345555443
No 198
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=24.34 E-value=2.6e+02 Score=25.74 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=56.8
Q ss_pred CCCCcEEEeCC-CCCHHHHHHHHHcCCcEEEecCHH-----HHHHHHhH-CCCCeEEEEEecCC-CCC--CCCCCCCCcC
Q 015304 97 VSPDRIIYANP-CKPVSHIKYAANVGVNLTTFDSVE-----ELHKIRKW-HPKCDLLIRIKPPD-DSG--AKHPLDSKYG 166 (409)
Q Consensus 97 ~~~~~Ii~~gp-~k~~~~i~~a~~~gv~~~~vds~~-----el~~i~~~-~~~~~v~lRv~~~~-~~~--~~~~~~srfG 166 (409)
++++++++.|- ..++++.+++.+.|+..+..+.++ -++.+.+. .....+.|-++... ++. ....+-...|
T Consensus 174 ~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~ei~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~pgG 253 (330)
T 4g3h_A 174 IDPKCLVYFGVRSTEQSERDVIRELQIPLFSVDAIRENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVRENNG 253 (330)
T ss_dssp CCGGGEEEESCCBCCHHHHHHHHHHTCCEECHHHHHHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCCSSC
T ss_pred CCcccEEEEecCCCCHHHHHHHHHcCCeEEEHHHhhcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCCCCC
Confidence 56688888875 236778888888999755444330 02333332 22245677666521 211 1112235789
Q ss_pred CCCCcccHHHHHHHHHHc-CCeEEEEEEe
Q 015304 167 VDHHPQEIVPLLEAAEAS-GLSVVGVAFH 194 (409)
Q Consensus 167 i~~~~~~~~~~~~~~~~~-~l~l~Glh~H 194 (409)
++ ..|+..+++.+... +.+++|+..=
T Consensus 254 lt--~~e~~~il~~l~~~~~~~vvg~Div 280 (330)
T 4g3h_A 254 LS--FDELKQLLGLLLESFKDRLKAVEVT 280 (330)
T ss_dssp BC--HHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CC--HHHHHHHHHHHHhhCCCCEEEEEEE
Confidence 99 89999999888541 3467777654
No 199
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=24.30 E-value=2.1e+02 Score=25.52 Aligned_cols=36 Identities=8% Similarity=0.028 Sum_probs=15.7
Q ss_pred CCCcCCCCCcccHHHHHHHHHHc-CCeEEEEEEeeCCCCCCHHHH
Q 015304 162 DSKYGVDHHPQEIVPLLEAAEAS-GLSVVGVAFHIGSAATKFAAY 205 (409)
Q Consensus 162 ~srfGi~~~~~~~~~~~~~~~~~-~l~l~Glh~H~gs~~~~~~~~ 205 (409)
|.+-+++ +++.+.++++++. ++.+ -.|.++.+++..
T Consensus 185 G~~~~~~---~~~~~~v~~vr~~~~~pv-----~vGfGI~~~e~~ 221 (267)
T 3vnd_A 185 GTESKAG---EPIENILTQLAEFNAPPP-----LLGFGIAEPEQV 221 (267)
T ss_dssp -----------CHHHHHHHHHTTTCCCE-----EECSSCCSHHHH
T ss_pred CCccCCc---HHHHHHHHHHHHhcCCCE-----EEECCcCCHHHH
Confidence 4444443 4566777777664 3322 236666666554
No 200
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=24.22 E-value=97 Score=27.68 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=33.1
Q ss_pred HHHHHHcCCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCCH-H---------HHHHHHHcCCcEEEec
Q 015304 71 LEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPV-S---------HIKYAANVGVNLTTFD 128 (409)
Q Consensus 71 l~~l~~~G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~~-~---------~i~~a~~~gv~~~~vd 128 (409)
++...+.|+.--|+|+.|+..+++. .+++-+++++..... . ..+.+++.|...+++.
T Consensus 150 A~~a~~~G~dGvV~s~~e~~~ir~~-~~~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvG 216 (259)
T 3tfx_A 150 AKMAKHSGADGVICSPLEVKKLHEN-IGDDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVG 216 (259)
T ss_dssp HHHHHHTTCCEEECCGGGHHHHHHH-HCSSSEEEECCCCCC-----------CHHHHHHTTCSEEEEC
T ss_pred HHHHHHhCCCEEEECHHHHHHHHhh-cCCccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEC
Confidence 3444566885556678999888875 234556666433321 1 1556677777655543
No 201
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=24.21 E-value=2e+02 Score=26.11 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHHHHHc-CC--cEEEcCHHHHHHHHhCCCCCCcEEEeCCC--CCHHHHHHHHHcCCcEEE
Q 015304 68 PALLEALAAL-GS--NFDCASRSEIEAVLALGVSPDRIIYANPC--KPVSHIKYAANVGVNLTT 126 (409)
Q Consensus 68 ~~vl~~l~~~-G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~--k~~~~i~~a~~~gv~~~~ 126 (409)
.++++.+.+. ++ .+|.....-++.++++|. .|+..-.. ..++.++.+.++|+.++.
T Consensus 104 vpvI~~l~~~~~vpiSIDT~~~~V~~aAl~aGa---~iINdvsg~~~d~~m~~~aa~~g~~vVl 164 (297)
T 1tx2_A 104 VPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGA---HIINDIWGAKAEPKIAEVAAHYDVPIIL 164 (297)
T ss_dssp HHHHHHHHHHSCSCEEEECSCHHHHHHHHHHTC---CEEEETTTTSSCTHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCCHHHHHHHHHhCCcEEE
Confidence 3445666653 64 899999999999999984 57754222 356677888899987443
No 202
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=24.20 E-value=3.1e+02 Score=25.68 Aligned_cols=99 Identities=5% Similarity=0.093 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEEE--c--CHHHHHHHHhCCCCCCcEEEeC
Q 015304 39 LGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFDC--A--SRSEIEAVLALGVSPDRIIYAN 106 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~v--a--S~~E~~~a~~~G~~~~~Ii~~g 106 (409)
.+...+.++++|++++ ++.+. +++|. ...+++.|.+.|+ .+|- . ....+..+++. .+ -+|....
T Consensus 177 ~~~~~e~v~avR~a~G~d~~l~--vDan~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~-~~-iPIa~dE 252 (391)
T 2qgy_A 177 LSISIQFVEKVREIVGDELPLM--LDLAVPEDLDQTKSFLKEVSSFNPYWIEEPVDGENISLLTEIKNT-FN-MKVVTGE 252 (391)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEE--EECCCCSCHHHHHHHHHHHGGGCCSEEECSSCTTCHHHHHHHHHH-CS-SCEEECT
T ss_pred HHHHHHHHHHHHHHhCCCCEEE--EEcCCCCCHHHHHHHHHHHHhcCCCeEeCCCChhhHHHHHHHHhh-CC-CCEEEcC
Confidence 4666778888888774 45554 68886 2456677777777 6662 2 34455544443 11 2577777
Q ss_pred CCCCHHHHHHHHHcC-CcEEEe-----cCHHHHHHHHhHCC
Q 015304 107 PCKPVSHIKYAANVG-VNLTTF-----DSVEELHKIRKWHP 141 (409)
Q Consensus 107 p~k~~~~i~~a~~~g-v~~~~v-----ds~~el~~i~~~~~ 141 (409)
...+.++++.+++.+ +..+++ ..+.+..++.+.+.
T Consensus 253 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~ 293 (391)
T 2qgy_A 253 KQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEAS 293 (391)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHH
Confidence 777788888888765 344444 36777777666554
No 203
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=23.91 E-value=4.5e+02 Score=24.54 Aligned_cols=103 Identities=9% Similarity=0.087 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhCCCcceEEecCcCC------cHHHHHHHHHcCC-cEE--Ec--CHHHHHHHHhCCCCCCcEEEeCC
Q 015304 39 LGVVVTLYNQMISKLPMIHPHYAVKCNP------EPALLEALAALGS-NFD--CA--SRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~~~~i~yavKan~------~~~vl~~l~~~G~-g~~--va--S~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
.+.-.+.++++|+++|++.+ .+.+|. ...+++.|.+.|+ .+| +. ....+..+++. .+ -+|.....
T Consensus 176 ~~~d~~~v~avR~a~~~~~l--~vDan~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~~-~~-iPIa~dE~ 251 (385)
T 3i6e_A 176 HAFDIMRLELIARDFPEFRV--RVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGL-TD-VPLLADES 251 (385)
T ss_dssp HHHHHHHHHHHHHHCTTSEE--EEECTTCCCGGGHHHHHHHHHTTCCSCEECCSCTTCHHHHHHHHTT-CS-SCEEESTT
T ss_pred HHHHHHHHHHHHHhCCCCeE--EEECCCCCCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHHh-CC-CCEEEeCC
Confidence 45556788889998865544 478886 3467888888887 777 22 35566655553 22 36777777
Q ss_pred CCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCCeE
Q 015304 108 CKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKCDL 145 (409)
Q Consensus 108 ~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~~v 145 (409)
..+..+++.+++.+ +..+++| .+.+..++.+.+....+
T Consensus 252 ~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi 295 (385)
T 3i6e_A 252 VYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGL 295 (385)
T ss_dssp CCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCC
Confidence 88889999888765 4556665 67888888776544333
No 204
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.60 E-value=84 Score=26.62 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=43.1
Q ss_pred cEEEEeHHH--HHHHHHHHHHhCCCc-ceEEecCcCCcHHHHHHHHHcCC-cEEEcCHHHHHHHH----hCCCCCCcEEE
Q 015304 33 PFYILDLGV--VVTLYNQMISKLPMI-HPHYAVKCNPEPALLEALAALGS-NFDCASRSEIEAVL----ALGVSPDRIIY 104 (409)
Q Consensus 33 P~~v~d~~~--l~~n~~~~~~~~~~~-~i~yavKan~~~~vl~~l~~~G~-g~~vaS~~E~~~a~----~~G~~~~~Ii~ 104 (409)
|...+..+. +.+.+...++..+++ -+.|.--.+....+.+ +....+ -+...|.+|++.+. +.|+ +++.
T Consensus 72 PVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~-ll~~~i~~~~~~~~~e~~~~i~~l~~~G~---~vvV 147 (196)
T 2q5c_A 72 PSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEA-MLGVKIKEFLFSSEDEITTLISKVKTENI---KIVV 147 (196)
T ss_dssp CEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHH-HHTCEEEEEEECSGGGHHHHHHHHHHTTC---CEEE
T ss_pred CEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHH-HhCCceEEEEeCCHHHHHHHHHHHHHCCC---eEEE
Confidence 776654443 455555555533321 1222211112222222 222223 44566666655433 3465 3454
Q ss_pred eCCCCCHHHHHHHHHcCCcEEEecC-HHHHH
Q 015304 105 ANPCKPVSHIKYAANVGVNLTTFDS-VEELH 134 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~gv~~~~vds-~~el~ 134 (409)
.|. --.+.|-+.|...+.+.| .+-+.
T Consensus 148 G~~----~~~~~A~~~Gl~~vli~sg~eSI~ 174 (196)
T 2q5c_A 148 SGK----TVTDEAIKQGLYGETINSGEESLR 174 (196)
T ss_dssp ECH----HHHHHHHHTTCEEEECCCCHHHHH
T ss_pred CCH----HHHHHHHHcCCcEEEEecCHHHHH
Confidence 443 225566777776556666 44443
No 205
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=23.58 E-value=2.8e+02 Score=24.93 Aligned_cols=25 Identities=4% Similarity=-0.069 Sum_probs=15.5
Q ss_pred cEEEeCCCCCHHHHHHHHHcCCcEE
Q 015304 101 RIIYANPCKPVSHIKYAANVGVNLT 125 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~gv~~~ 125 (409)
.|+.+|...+.++...++..|+..+
T Consensus 246 pvi~~GGI~~~~da~~~l~~GAd~V 270 (314)
T 2e6f_A 246 LVFGCGGVYSGEDAFLHILAGASMV 270 (314)
T ss_dssp EEEEESSCCSHHHHHHHHHHTCSSE
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEE
Confidence 4666666666666666666665433
No 206
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A
Probab=23.55 E-value=83 Score=29.85 Aligned_cols=56 Identities=21% Similarity=0.193 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHcC--CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC--cEEeecCC
Q 015304 172 QEIVPLLEAAEASG--LSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKM--RVLDIGGG 235 (409)
Q Consensus 172 ~~~~~~~~~~~~~~--l~l~Glh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~--~~ldiGGG 235 (409)
+...++++.+++.+ |..+|+++|++....+.+.+...+++ +..+|. ++ .-+|+...
T Consensus 212 ~~~~~~v~~l~~~g~piDgIG~Q~H~~~~~p~~~~~~~~l~~-------~a~lGl-pI~iTElDi~~~ 271 (379)
T 1r85_A 212 TALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINM-------FAALGL-DNQITELDVSMY 271 (379)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCEECSSSSCHHHHHHHHHH-------HHHTTC-EEEEEEEEECSS
T ss_pred HHHHHHHHHHHHCCCceeEEEEeEEecCCCCCHHHHHHHHHH-------HHhcCC-eEEEeeccccCC
Confidence 44556666666665 68889988987654455555444433 345665 43 44777654
No 207
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=23.45 E-value=3.3e+02 Score=25.57 Aligned_cols=102 Identities=13% Similarity=0.052 Sum_probs=69.8
Q ss_pred eHHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEE--Ec--CHHHHHHHH-hCCCCCCcEEE
Q 015304 38 DLGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFD--CA--SRSEIEAVL-ALGVSPDRIIY 104 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~--va--S~~E~~~a~-~~G~~~~~Ii~ 104 (409)
+.+.-.+.++++|++++ ++.+ .+++|. ...+++.|.+.|+ .+| +. ....+..++ +. .+ -+|..
T Consensus 177 ~~~~d~~~v~avR~a~g~d~~l--~vDan~~~~~~~A~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~-~~-iPIa~ 252 (389)
T 3ozy_A 177 APRKDAANLRAMRQRVGADVEI--LVDANQSLGRHDALAMLRILDEAGCYWFEEPLSIDDIEGHRILRAQG-TP-VRIAT 252 (389)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEE--EEECTTCCCHHHHHHHHHHHHHTTCSEEESCSCTTCHHHHHHHHTTC-CS-SEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCceE--EEECCCCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhcC-CC-CCEEe
Confidence 45677788889999885 5544 488886 2457788888887 677 33 456666665 43 22 36777
Q ss_pred eCCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCC
Q 015304 105 ANPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKC 143 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~ 143 (409)
.....+.++++.+++.+ +..+++| .+.+..++.+.+...
T Consensus 253 dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~ 297 (389)
T 3ozy_A 253 GENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASA 297 (389)
T ss_dssp CTTCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 77778888888888765 4455554 688888887765433
No 208
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=23.39 E-value=2.4e+02 Score=25.89 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=39.7
Q ss_pred HHHHHHHHHc--CC--cEEEcCHHHHHHHHhCCCCCCcEEEe--CCCCCHHHHHHHHHcCCcEEE
Q 015304 68 PALLEALAAL--GS--NFDCASRSEIEAVLALGVSPDRIIYA--NPCKPVSHIKYAANVGVNLTT 126 (409)
Q Consensus 68 ~~vl~~l~~~--G~--g~~vaS~~E~~~a~~~G~~~~~Ii~~--gp~k~~~~i~~a~~~gv~~~~ 126 (409)
.++++.+.+. ++ .+|....+.++.++++|. .|+.. |- ..++.++.+.++|+.++.
T Consensus 105 ~pvI~~l~~~~~~vpISIDT~~~~VaeaAl~aGa---~iINDVsg~-~d~~m~~vaa~~g~~vVl 165 (318)
T 2vp8_A 105 VPFIEWLRGAYPDQLISVDTWRAQVAKAACAAGA---DLINDTWGG-VDPAMPEVAAEFGAGLVC 165 (318)
T ss_dssp HHHHHHHHHHSTTCEEEEECSCHHHHHHHHHHTC---CEEEETTSS-SSTTHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhCCCCeEEEeCCCHHHHHHHHHhCC---CEEEECCCC-CchHHHHHHHHhCCCEEE
Confidence 4456766654 65 899999999999999985 46654 32 355677888889986443
No 209
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=23.38 E-value=3.4e+02 Score=23.11 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred eHHHHHHHHHHHHHh-CCCcceEEecCcCCcHHHHHHHHHc------CCcEEEcCHHHHHHHHhCCCCCCcEEEeCCCCC
Q 015304 38 DLGVVVTLYNQMISK-LPMIHPHYAVKCNPEPALLEALAAL------GSNFDCASRSEIEAVLALGVSPDRIIYANPCKP 110 (409)
Q Consensus 38 d~~~l~~n~~~~~~~-~~~~~i~yavKan~~~~vl~~l~~~------G~g~~vaS~~E~~~a~~~G~~~~~Ii~~gp~k~ 110 (409)
|.+.+.+.++++.+. .+-+++. .|.......++.+.+. |+|. +.+.++++.+.++| -+.+..+ ..+
T Consensus 26 ~~~~~~~~~~al~~gGv~~iel~--~k~~~~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aG---Ad~v~~p-~~d 98 (214)
T 1wbh_A 26 KLEHAVPMAKALVAGGVRVLNVT--LRTECAVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAG---AQFAISP-GLT 98 (214)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEE--SCSTTHHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHT---CSCEEES-SCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe--CCChhHHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcC---CCEEEcC-CCC
Q ss_pred HHHHHHHHHcCCcEE-EecCHHHHHHHHhHC
Q 015304 111 VSHIKYAANVGVNLT-TFDSVEELHKIRKWH 140 (409)
Q Consensus 111 ~~~i~~a~~~gv~~~-~vds~~el~~i~~~~ 140 (409)
.+-++.+.++|+..+ -+.+.+|+....+..
T Consensus 99 ~~v~~~~~~~g~~~i~G~~t~~e~~~A~~~G 129 (214)
T 1wbh_A 99 EPLLKAATEGTIPLIPGISTVSELMLGMDYG 129 (214)
T ss_dssp HHHHHHHHHSSSCEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCEEEecCCHHHHHHHHHCC
No 210
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=23.33 E-value=2.1e+02 Score=25.22 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=8.8
Q ss_pred EeHHHHHHHHHHHHH
Q 015304 37 LDLGVVVTLYNQMIS 51 (409)
Q Consensus 37 ~d~~~l~~n~~~~~~ 51 (409)
.|...|.+-++++.+
T Consensus 37 aD~~~L~~~i~~l~~ 51 (246)
T 3inp_A 37 ADLARLGDDVKAVLA 51 (246)
T ss_dssp SCGGGHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHH
Confidence 455556666666654
No 211
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=23.19 E-value=1.9e+02 Score=27.32 Aligned_cols=101 Identities=9% Similarity=-0.025 Sum_probs=68.2
Q ss_pred eHHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEE--EcC---HHHHHHHHh-CCCCCCcEE
Q 015304 38 DLGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFD--CAS---RSEIEAVLA-LGVSPDRII 103 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~--vaS---~~E~~~a~~-~G~~~~~Ii 103 (409)
+.+.-.+.++++|++++ ++.+ .+.+|. ...+++.|.+.|+ .+| +.. ...+..+++ .++ +|.
T Consensus 181 ~~~~d~~~v~avR~a~g~~~~l--~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~~l~~~~~i---PIa 255 (392)
T 3ddm_A 181 DDARDVRNALHVRELLGAATPL--MADANQGWDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAELAQAAPM---PLA 255 (392)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCE--EEECTTCCCHHHHHHHHHHHGGGCCSEEECCSCTTSCHHHHHHHHHHCSS---CEE
T ss_pred CHHHHHHHHHHHHHhcCCCceE--EEeCCCCCCHHHHHHHHHHHHHhCCCEEECCCCccchHHHHHHHHHhcCC---CEE
Confidence 45667788889999885 5555 478886 2456777878887 777 332 555665554 343 577
Q ss_pred EeCCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCC
Q 015304 104 YANPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKC 143 (409)
Q Consensus 104 ~~gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~ 143 (409)
......+.++++.+++.| +..+++| .+.+..++.+.+...
T Consensus 256 ~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~ 301 (392)
T 3ddm_A 256 GGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAA 301 (392)
T ss_dssp ECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHHHc
Confidence 777788889999988766 3445554 467777777765433
No 212
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=23.02 E-value=4.6e+02 Score=24.41 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=14.0
Q ss_pred cEEEeCCCCCHHHHHHHHHcCCcEEEe
Q 015304 101 RIIYANPCKPVSHIKYAANVGVNLTTF 127 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~gv~~~~v 127 (409)
.|+..|...+.+++..|+..|...+.+
T Consensus 286 pVia~GGI~~g~D~~kalalGAd~V~i 312 (368)
T 2nli_A 286 PIVFDSGVRRGEHVAKALASGADVVAL 312 (368)
T ss_dssp CEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred eEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 355555555555555555555543333
No 213
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=22.95 E-value=4.6e+02 Score=24.49 Aligned_cols=55 Identities=9% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCCCcEEEe-CCCCCHHH---HHHHHHc--CCcEE--EecCHHHHHHHHhHCCC
Q 015304 86 RSEIEAVLALGVSPDRIIYA-NPCKPVSH---IKYAANV--GVNLT--TFDSVEELHKIRKWHPK 142 (409)
Q Consensus 86 ~~E~~~a~~~G~~~~~Ii~~-gp~k~~~~---i~~a~~~--gv~~~--~vds~~el~~i~~~~~~ 142 (409)
...++.+.++|++ -|.++ ....++.. ++.+.+. ++.++ ++-+.++++.+.+....
T Consensus 110 ~~~~~~lieaGvd--~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD 172 (366)
T 4fo4_A 110 EERVKALVEAGVD--VLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVS 172 (366)
T ss_dssp HHHHHHHHHTTCS--EEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCS
T ss_pred HHHHHHHHhCCCC--EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCC
Confidence 5677788888863 45553 22223332 3444444 55433 58899999988877543
No 214
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=22.78 E-value=3.3e+02 Score=25.10 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=37.5
Q ss_pred eEEecCcCCcHHHHHHHHHcCCcEEEcCH------HHH-HHHHhCCCCCCcEEEeCCC
Q 015304 58 PHYAVKCNPEPALLEALAALGSNFDCASR------SEI-EAVLALGVSPDRIIYANPC 108 (409)
Q Consensus 58 i~yavKan~~~~vl~~l~~~G~g~~vaS~------~E~-~~a~~~G~~~~~Ii~~gp~ 108 (409)
+..++.....+.+++.+++.|+.+-+.+. .++ +.+.++|+++++|++....
T Consensus 160 lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~ 217 (323)
T 4djd_D 160 LLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLPLDHIVIDPSI 217 (323)
T ss_dssp EEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCC
T ss_pred eEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCCHHHEEEeCCC
Confidence 55677665568999999999997777654 222 3567789999999987443
No 215
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=22.75 E-value=3.1e+02 Score=26.67 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=19.8
Q ss_pred cccHHHHHHHHHH-cCCeEEEEEEeeCCC
Q 015304 171 PQEIVPLLEAAEA-SGLSVVGVAFHIGSA 198 (409)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~l~Glh~H~gs~ 198 (409)
|.++.++++.+++ .++. .|+|+|--.+
T Consensus 186 P~~v~~lv~~l~~~~~~~-i~~H~Hnd~G 213 (464)
T 2nx9_A 186 PYAAEELVSTLKKQVDVE-LHLHCHSTAG 213 (464)
T ss_dssp HHHHHHHHHHHHHHCCSC-EEEEECCTTS
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEECCCCC
Confidence 7888888888865 4554 5889987554
No 216
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=22.34 E-value=4.6e+02 Score=24.37 Aligned_cols=82 Identities=9% Similarity=-0.032 Sum_probs=47.8
Q ss_pred HHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCC-cEEEcC------------HHHHHHHHhCCCCCCcEEEeCCCCCH
Q 015304 45 LYNQMISKLPMIHPHYAVKCNPEPALLEALAALGS-NFDCAS------------RSEIEAVLALGVSPDRIIYANPCKPV 111 (409)
Q Consensus 45 n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~-g~~vaS------------~~E~~~a~~~G~~~~~Ii~~gp~k~~ 111 (409)
.++++++..+ ..+ .+|--.++..++.+.+.|+ ++.|++ ..-+..+.+.--+.-.|+..|...+.
T Consensus 216 ~i~~l~~~~~-~pv--~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~ 292 (370)
T 1gox_A 216 DVAWLQTITS-LPI--LVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 292 (370)
T ss_dssp HHHHHHHHCC-SCE--EEECCCSHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSH
T ss_pred HHHHHHHHhC-CCE--EEEecCCHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCH
Confidence 3566666553 222 2566567788888888888 777744 11122222210011357777777788
Q ss_pred HHHHHHHHcCCcEEEecC
Q 015304 112 SHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 112 ~~i~~a~~~gv~~~~vds 129 (409)
+++..++..|+..+.+.+
T Consensus 293 ~D~~k~l~~GAdaV~iGr 310 (370)
T 1gox_A 293 TDVFKALALGAAGVFIGR 310 (370)
T ss_dssp HHHHHHHHHTCSEEEECH
T ss_pred HHHHHHHHcCCCEEeecH
Confidence 888888877776544443
No 217
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=22.24 E-value=4.6e+02 Score=24.03 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=32.0
Q ss_pred CcceEEecCcCCcHHHHHHHHHcCCcEEEcC-HHH-----------------------------HHHHHhCCCCCCcEEE
Q 015304 55 MIHPHYAVKCNPEPALLEALAALGSNFDCAS-RSE-----------------------------IEAVLALGVSPDRIIY 104 (409)
Q Consensus 55 ~~~i~yavKan~~~~vl~~l~~~G~g~~vaS-~~E-----------------------------~~~a~~~G~~~~~Ii~ 104 (409)
+..+...+-+-..+.+++.+++.|+.+-+.. .+. ++.+.++|+++++|++
T Consensus 137 Ga~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~Iil 216 (318)
T 2vp8_A 137 GADLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLI 216 (318)
T ss_dssp TCCEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred CCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 3445666655556777888888887554432 111 4566677887778887
Q ss_pred eC
Q 015304 105 AN 106 (409)
Q Consensus 105 ~g 106 (409)
..
T Consensus 217 DP 218 (318)
T 2vp8_A 217 DP 218 (318)
T ss_dssp ET
T ss_pred cC
Confidence 63
No 218
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=22.22 E-value=2.1e+02 Score=26.89 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEEEeeCC
Q 015304 171 PQEIVPLLEAAEASGLSVVGVAFHIGS 197 (409)
Q Consensus 171 ~~~~~~~~~~~~~~~l~l~Glh~H~gs 197 (409)
.+.+.++++.+++.++.+. |=...||
T Consensus 119 ~~~~~~vv~~ak~~~~piR-IGvN~GS 144 (366)
T 3noy_A 119 EEIVREIVEEAKRRGVAVR-IGVNSGS 144 (366)
T ss_dssp HHHHHHHHHHHHHHTCEEE-EEEEGGG
T ss_pred hhHHHHHHHHHHHcCCCEE-EecCCcC
Confidence 4556666776666664332 3334444
No 219
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=22.17 E-value=4.1e+02 Score=23.76 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=17.4
Q ss_pred cEEEeCCCCCHHHHHHHHHcCCcEEEe
Q 015304 101 RIIYANPCKPVSHIKYAANVGVNLTTF 127 (409)
Q Consensus 101 ~Ii~~gp~k~~~~i~~a~~~gv~~~~v 127 (409)
.|+.+|...+.++...++..|+..+.+
T Consensus 244 pvi~~GGI~~~~da~~~l~~GAd~V~v 270 (311)
T 1jub_A 244 QIIGTGGIETGQDAFEHLLCGATMLQI 270 (311)
T ss_dssp EEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 566667767777777766666654444
No 220
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=22.08 E-value=3e+02 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHc-CCeEEEEEEeeCCCCCCHHHH
Q 015304 172 QEIVPLLEAAEAS-GLSVVGVAFHIGSAATKFAAY 205 (409)
Q Consensus 172 ~~~~~~~~~~~~~-~l~l~Glh~H~gs~~~~~~~~ 205 (409)
+++.++++++++. ++.+ -+|.++.+++..
T Consensus 194 ~~~~~~v~~vr~~~~~Pv-----~vGfGIst~e~~ 223 (271)
T 3nav_A 194 MPVHALLERLQQFDAPPA-----LLGFGISEPAQV 223 (271)
T ss_dssp HHHHHHHHHHHHTTCCCE-----EECSSCCSHHHH
T ss_pred hhHHHHHHHHHHhcCCCE-----EEECCCCCHHHH
Confidence 3456666766654 3322 235566555544
No 221
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=21.90 E-value=3.9e+02 Score=23.18 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCeEEEEEEeeCCC-----CCC-HHHHHHHHHHHHHHHHHHHHcCCCCCcEEeec
Q 015304 175 VPLLEAAEASGLSVVGVAFHIGSA-----ATK-FAAYRGAIAAAKAVFETAARLGNNKMRVLDIG 233 (409)
Q Consensus 175 ~~~~~~~~~~~l~l~Glh~H~gs~-----~~~-~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiG 233 (409)
.+.++.++..|.+...+.+|.+.. ..+ .+.+...++.+.++.+.+++.|+ .+-+=+.+
T Consensus 91 ~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lEn~~ 154 (294)
T 3vni_A 91 TDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGV-DFCLEVLN 154 (294)
T ss_dssp HHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred HHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEecC
Confidence 344555566787777655665532 122 34556667777888888888887 65554554
No 222
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Probab=21.87 E-value=4.2e+02 Score=24.40 Aligned_cols=104 Identities=9% Similarity=0.078 Sum_probs=68.1
Q ss_pred eHHHHHHHHHHHHHhCC-CcceEEecCcCCc------H-HHHHHHHHcCC-cEE--Ec--CHHHHHHHHhCCCCCCcEEE
Q 015304 38 DLGVVVTLYNQMISKLP-MIHPHYAVKCNPE------P-ALLEALAALGS-NFD--CA--SRSEIEAVLALGVSPDRIIY 104 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~-~~~i~yavKan~~------~-~vl~~l~~~G~-g~~--va--S~~E~~~a~~~G~~~~~Ii~ 104 (409)
|.+...+.+++++++++ ++.+ .+++|.. . .+++.|.+.|+ .+| +. ....+..+++. .+ -+|..
T Consensus 167 ~~~~~~e~v~avr~a~g~~~~l--~vDan~~~~~~~a~~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~-~~-iPI~~ 242 (369)
T 2p8b_A 167 NVKEDVKRIEAVRERVGNDIAI--RVDVNQGWKNSANTLTALRSLGHLNIDWIEQPVIADDIDAMAHIRSK-TD-LPLMI 242 (369)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEE--EEECTTTTBSHHHHHHHHHTSTTSCCSCEECCBCTTCHHHHHHHHHT-CC-SCEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCeE--EEECCCCCCHHHHHHHHHHHHHhCCCcEEECCCCcccHHHHHHHHHh-CC-CCEEe
Confidence 45667788888998885 5555 5888862 3 44555556676 666 22 34445555543 22 35888
Q ss_pred eCCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCCeE
Q 015304 105 ANPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKCDL 145 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~~v 145 (409)
.....+.++++.+++.+ +..++++ .+.+..++.+.+....+
T Consensus 243 dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~ 289 (369)
T 2p8b_A 243 DEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGI 289 (369)
T ss_dssp STTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCC
Confidence 88888899999998765 4566775 77788888776544433
No 223
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=21.80 E-value=3.4e+02 Score=25.77 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=12.2
Q ss_pred ccHHHHHHHHHHcCCeEE
Q 015304 172 QEIVPLLEAAEASGLSVV 189 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l~ 189 (409)
.++.++...+++.++.+.
T Consensus 319 t~a~kia~~A~a~gi~v~ 336 (412)
T 3stp_A 319 TAAQKINAIAEAAQIPVI 336 (412)
T ss_dssp HHHHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 356777777777777653
No 224
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=21.79 E-value=2.1e+02 Score=24.16 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=37.7
Q ss_pred cCCcEEEcCHHHHHHHHhCCC-CCCcEEEeCCCCCHHHHHHHHHcCCc--EEEe-----------------cCHHHHHHH
Q 015304 77 LGSNFDCASRSEIEAVLALGV-SPDRIIYANPCKPVSHIKYAANVGVN--LTTF-----------------DSVEELHKI 136 (409)
Q Consensus 77 ~G~g~~vaS~~E~~~a~~~G~-~~~~Ii~~gp~k~~~~i~~a~~~gv~--~~~v-----------------ds~~el~~i 136 (409)
.|+.+.+-|.+++....+.+- +..++++.- ++++++..+++.|+. .+++ =+.+|++.+
T Consensus 74 ~gvk~~i~sve~ai~~~~~~~~~~~~v~il~--k~p~d~~~lve~Gv~i~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~l 151 (187)
T 3lfj_A 74 PGVKVKVFGVDAALKEWSQKTSVEEKVFLLF--KNIDTCKRVMDGGLPITTLNIGGVAKTPQRKGISQSVSLSEDEVKTL 151 (187)
T ss_dssp TTCCEEEECHHHHHHHHHSBCSSCEEEEEEE--SSHHHHHHHHHTTCCCSEEEEEEBCCCTTSEECSSSBEECHHHHHHH
T ss_pred CCCeEEEEEHHHHHHHHhCCccCCceEEEEE--CCHHHHHHHHHcCCCCCEEEECCCCCCCCCEEEeccEeeCHHHHHHH
Confidence 355555666666554444332 223333322 345555555555542 2333 246777777
Q ss_pred HhHC-C-CCeEEEEEec
Q 015304 137 RKWH-P-KCDLLIRIKP 151 (409)
Q Consensus 137 ~~~~-~-~~~v~lRv~~ 151 (409)
.++. . ..++-+|.-|
T Consensus 152 k~L~~~~Gv~v~~q~vP 168 (187)
T 3lfj_A 152 LELKTKYNVDVYLQMIP 168 (187)
T ss_dssp HHHHHHHCCEEEECSST
T ss_pred HHHHhccCCEEEEEECC
Confidence 7654 2 3667777766
No 225
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=21.69 E-value=2.7e+02 Score=23.38 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHc--CC--cEEEcCHHHHHHHHhCCCC---------------------------------CCcEEEeCCCCC
Q 015304 68 PALLEALAAL--GS--NFDCASRSEIEAVLALGVS---------------------------------PDRIIYANPCKP 110 (409)
Q Consensus 68 ~~vl~~l~~~--G~--g~~vaS~~E~~~a~~~G~~---------------------------------~~~Ii~~gp~k~ 110 (409)
..+++.+++. |. +.++.+..|+..+.++|.+ .-.++..|...+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~ 186 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVIT 186 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCS
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCC
Q ss_pred HHHHHHHHHcCCcEEEecC
Q 015304 111 VSHIKYAANVGVNLTTFDS 129 (409)
Q Consensus 111 ~~~i~~a~~~gv~~~~vds 129 (409)
.++++.+++.|+..+.+.+
T Consensus 187 ~~~~~~~~~~Gad~v~vG~ 205 (223)
T 1y0e_A 187 PDMYKRVMDLGVHCSVVGG 205 (223)
T ss_dssp HHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHcCCCEEEECh
No 226
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A*
Probab=21.60 E-value=3.3e+02 Score=26.08 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=55.7
Q ss_pred CCCCcEEEeCC-CCCHHHHHHHHHcCCcEEEecCHHHH------HHHHh-HC--CCCeEEEEEecCC-CCC--CCCCCCC
Q 015304 97 VSPDRIIYANP-CKPVSHIKYAANVGVNLTTFDSVEEL------HKIRK-WH--PKCDLLIRIKPPD-DSG--AKHPLDS 163 (409)
Q Consensus 97 ~~~~~Ii~~gp-~k~~~~i~~a~~~gv~~~~vds~~el------~~i~~-~~--~~~~v~lRv~~~~-~~~--~~~~~~s 163 (409)
++++++++.|- ..++++.+++.+.|+..++.+.+.+. +.+.+ +. ....+.|-++... ++. +...+-.
T Consensus 262 l~p~~vv~IGIRs~d~eE~e~~~~~Gi~v~t~~eI~~~Gi~~vie~il~~l~~~~~~~VYLSfDIDvLDPa~APGtGTPe 341 (413)
T 3sl1_A 262 LKPENTAIIGIRDIDAYEKIILKKCNINYYTIFDIEKNGIYNTICTALEKIDPNSNCPIHISLDIDSVDNVFAPGTGTVA 341 (413)
T ss_dssp CCGGGEEEEEECCCCHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHCTTSCSCEEEEEEGGGBCTTTCCCSSSCC
T ss_pred cCcceEEEEEcCCCCHHHHHHHHHcCCEEEeHHHhhhcCHHHHHHHHHHHhhhcCCceEEEEEeccEEChhhCCCCCCCC
Confidence 35678887764 23578888888999976665555432 22222 22 1345777666521 221 1111235
Q ss_pred CcCCCCCcccHHHHHHHHHHcCCeEEEEEEe
Q 015304 164 KYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 164 rfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H 194 (409)
..|++ ..|+..+++.+... -+++|+..=
T Consensus 342 pGGLt--~rEll~llr~L~~s-~kVvG~DIV 369 (413)
T 3sl1_A 342 KGGLN--YREINLLMKILAET-KRVVSMDLV 369 (413)
T ss_dssp SSCBC--HHHHHHHHHHHHHH-SCEEEEEEE
T ss_pred CCCCC--HHHHHHHHHHHhcc-CCEEEEEEE
Confidence 78999 89999988887543 256666543
No 227
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=21.57 E-value=5.2e+02 Score=24.46 Aligned_cols=31 Identities=6% Similarity=0.129 Sum_probs=20.5
Q ss_pred HHHHHHHHHc-CC--cE-EEcCHHHHHHHHhCCCC
Q 015304 68 PALLEALAAL-GS--NF-DCASRSEIEAVLALGVS 98 (409)
Q Consensus 68 ~~vl~~l~~~-G~--g~-~vaS~~E~~~a~~~G~~ 98 (409)
+.+++.+++. +. .. .|.|..|++.+.++|.+
T Consensus 173 ~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD 207 (400)
T 3ffs_A 173 IRTLKEIKSKMNIDVIVGNVVTEEATKELIENGAD 207 (400)
T ss_dssp HHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCC
Confidence 4556666654 54 22 67888888888888863
No 228
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=21.50 E-value=4.8e+02 Score=23.99 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCC-CcceEEecCcCC------------cHHHHHHHHHcCC-cEEEcC----------------HHHHHH
Q 015304 42 VVTLYNQMISKLP-MIHPHYAVKCNP------------EPALLEALAALGS-NFDCAS----------------RSEIEA 91 (409)
Q Consensus 42 l~~n~~~~~~~~~-~~~i~yavKan~------------~~~vl~~l~~~G~-g~~vaS----------------~~E~~~ 91 (409)
+.+-+++++++.+ +.-+. +|-++ ...+++.|.+.|+ .++++. ..-+..
T Consensus 205 ~~eiv~aVR~avG~d~pV~--vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 282 (349)
T 3hgj_A 205 PLQVAQAVREVVPRELPLF--VRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADA 282 (349)
T ss_dssp HHHHHHHHHHHSCTTSCEE--EEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEE--EEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHH
Confidence 4666777888875 32232 34443 3577888999998 788873 011233
Q ss_pred HHhCCCCCCcEEEeCCCCCHHHHHHHHHcC-CcEEEec
Q 015304 92 VLALGVSPDRIIYANPCKPVSHIKYAANVG-VNLTTFD 128 (409)
Q Consensus 92 a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~g-v~~~~vd 128 (409)
+++. ++ -.|+.+|...+.++.+.+++.| +..+.+.
T Consensus 283 ir~~-~~-iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iG 318 (349)
T 3hgj_A 283 VRKR-VG-LRTGAVGLITTPEQAETLLQAGSADLVLLG 318 (349)
T ss_dssp HHHH-HC-CEEEECSSCCCHHHHHHHHHTTSCSEEEES
T ss_pred HHHH-cC-ceEEEECCCCCHHHHHHHHHCCCceEEEec
Confidence 3332 11 2466677667777777777776 5545544
No 229
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=21.36 E-value=1.8e+02 Score=27.12 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=30.1
Q ss_pred CCcEEEeCC-CCCHHHHHHHHHcCCcEEEecCHHHHHHHH
Q 015304 99 PDRIIYANP-CKPVSHIKYAANVGVNLTTFDSVEELHKIR 137 (409)
Q Consensus 99 ~~~Ii~~gp-~k~~~~i~~a~~~gv~~~~vds~~el~~i~ 137 (409)
+-.+++.|. ..+.++|+.|+++|+.-+|+++.-+.....
T Consensus 246 ~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~ 285 (349)
T 3elf_A 246 PFDFVFHGGSGSLKSEIEEALRYGVVKMNVDTDTQYAFTR 285 (349)
T ss_dssp CCCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred CCcEEEeCCCCCCHHHHHHHHHcCCEEEEcchHHHHHHHH
Confidence 346888854 577899999999999778999876655443
No 230
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=21.36 E-value=3.8e+02 Score=23.06 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=8.1
Q ss_pred cCCCCCcccHHHHHH
Q 015304 165 YGVDHHPQEIVPLLE 179 (409)
Q Consensus 165 fGi~~~~~~~~~~~~ 179 (409)
+|++ ++.+.++++
T Consensus 176 GGI~--~~t~~~~~~ 188 (228)
T 3ovp_A 176 GGVG--PDTVHKCAE 188 (228)
T ss_dssp SSCS--TTTHHHHHH
T ss_pred CCcC--HHHHHHHHH
Confidence 4777 777766543
No 231
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=21.34 E-value=4.9e+02 Score=24.28 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=12.7
Q ss_pred ccHHHHHHHHHHcCCeE
Q 015304 172 QEIVPLLEAAEASGLSV 188 (409)
Q Consensus 172 ~~~~~~~~~~~~~~l~l 188 (409)
.++.++++.+++.++.+
T Consensus 278 t~~~~i~~~A~~~g~~~ 294 (397)
T 2qde_A 278 LKAQRWLTLARLANLPV 294 (397)
T ss_dssp HHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHcCCeE
Confidence 46777888888888864
No 232
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Probab=21.21 E-value=3.9e+02 Score=24.65 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhCCCcceEEecCcCC------cHHHHHHHHHcCC-cEE--E--cCHHHHHHHHhCCCCCCcEEEeCC
Q 015304 39 LGVVVTLYNQMISKLPMIHPHYAVKCNP------EPALLEALAALGS-NFD--C--ASRSEIEAVLALGVSPDRIIYANP 107 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~~~~i~yavKan~------~~~vl~~l~~~G~-g~~--v--aS~~E~~~a~~~G~~~~~Ii~~gp 107 (409)
.+...+.+++++++++. .+...+++|. ...+++.|.+.|+ .+| + .....+..+++. .+ -+|.....
T Consensus 171 ~~~~~e~v~avr~a~g~-~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~~-~~-ipIa~dE~ 247 (370)
T 1nu5_A 171 PAQDLEHIRSIVKAVGD-RASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGALRRLTEQ-NG-VAILADES 247 (370)
T ss_dssp HHHHHHHHHHHHHHHGG-GCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEECCSCTTCHHHHHHHHHH-CS-SEEEESTT
T ss_pred hHHHHHHHHHHHHhcCC-CCEEEEECCCCCCHHHHHHHHHHHHhcCcceEeCCCCcccHHHHHHHHHh-CC-CCEEeCCC
Confidence 44566788888888752 2335688886 2467777888887 666 2 245555555543 11 35777777
Q ss_pred CCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCC
Q 015304 108 CKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPK 142 (409)
Q Consensus 108 ~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~ 142 (409)
..+.++++.+++.+ +..++++ .+.+..++.+.+..
T Consensus 248 ~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~ 288 (370)
T 1nu5_A 248 LSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEA 288 (370)
T ss_dssp CCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHH
Confidence 88899999998876 4566665 77788887776543
No 233
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=20.99 E-value=72 Score=28.34 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=42.1
Q ss_pred cHHHHHHHHHcC--C--cEEEcCHHHHH-HHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcE--EEecCHHHHHHHHhH
Q 015304 67 EPALLEALAALG--S--NFDCASRSEIE-AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNL--TTFDSVEELHKIRKW 139 (409)
Q Consensus 67 ~~~vl~~l~~~G--~--g~~vaS~~E~~-~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~--~~vds~~el~~i~~~ 139 (409)
++..++.+++.. + ++-+.+..++. .+.+.|+.++-+...-...+++.++.+.+.|+.+ .+|++.++++++.+.
T Consensus 177 ~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~l~~~ 256 (272)
T 3ch0_A 177 DVRALEYMHSQYPDIKLSYLVETKGTLKKQLEKLSFTPAVYSPDVTLVSKKDIDAAHKLGMRVIPWTVNTKEEIETLISL 256 (272)
T ss_dssp CHHHHHHHHHHCTTSEEEEEECSSCCHHHHHTTSSSCCSEEEEBGGGCCHHHHHHHHHTTCEECCBCCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCcEEEEecCCCCHHHHHHHcCCCCcEEccchhhcCHHHHHHHHHcCCEEEEeccCCHHHHHHHHHc
Confidence 455666666542 2 33333222222 2344565444444444455677888888888752 478888888887765
Q ss_pred C
Q 015304 140 H 140 (409)
Q Consensus 140 ~ 140 (409)
.
T Consensus 257 G 257 (272)
T 3ch0_A 257 G 257 (272)
T ss_dssp T
T ss_pred C
Confidence 4
No 234
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=20.97 E-value=2.4e+02 Score=26.18 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=61.9
Q ss_pred eHHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEEE----cCHHHHHHHHh-CCCCCCcEEE
Q 015304 38 DLGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFDC----ASRSEIEAVLA-LGVSPDRIIY 104 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~v----aS~~E~~~a~~-~G~~~~~Ii~ 104 (409)
+.+...+.+++++++++ ++.+ .+++|. ...+++.|.+.|+ .+|- .....+..+++ .++ +|..
T Consensus 173 ~~~~~~e~v~avr~a~G~d~~l--~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~i---PI~~ 247 (371)
T 2ovl_A 173 DLKEDVDRVSALREHLGDSFPL--MVDANMKWTVDGAIRAARALAPFDLHWIEEPTIPDDLVGNARIVRESGH---TIAG 247 (371)
T ss_dssp SHHHHHHHHHHHHHHHCTTSCE--EEECTTCSCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHHHHCS---CEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCeE--EEECCCCCCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCC---CEEe
Confidence 45566778888888874 4555 478886 2456677777777 5552 13444444443 233 4777
Q ss_pred eCCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCC
Q 015304 105 ANPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHP 141 (409)
Q Consensus 105 ~gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~ 141 (409)
.+...+.++++.+++.+ +..++++ .+.+..++.+.+.
T Consensus 248 dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~ 290 (371)
T 2ovl_A 248 GENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAE 290 (371)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHH
Confidence 77777888888887665 4445554 6777777766543
No 235
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=20.96 E-value=3.5e+02 Score=25.39 Aligned_cols=122 Identities=10% Similarity=0.066 Sum_probs=74.6
Q ss_pred cHHHHHHHHHhhc-CCCCCccEEE----EeHHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-c
Q 015304 14 ELTEFVRSTILKR-QEFDEVPFYI----LDLGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-N 80 (409)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~t~P~~v----~d~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g 80 (409)
+.++++++-.... ..+.. +-+ -+.....+.+++++++++ ++.+ .+++|. ...+++.|.+.|+ .
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~--vKik~g~~~~~~d~e~v~avR~avG~d~~l--~vDan~~~~~~~ai~~~~~l~~~~i~~ 250 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGG--IKLKVGQPNCAEDIRRLTAVREALGDEFPL--MVDANQQWDRETAIRMGRKMEQFNLIW 250 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSC--EEEECCCSCHHHHHHHHHHHHHHHCSSSCE--EEECTTCSCHHHHHHHHHHHGGGTCSC
T ss_pred CHHHHHHHHHHHHHhCCCe--EEEecCCCCHHHHHHHHHHHHHHcCCCCeE--EEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 5666765444433 33332 111 134556777888888875 4555 578886 2466777777787 7
Q ss_pred EEE--c--CHHHHHHHHh-CCCCCCcEEEeCCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCC
Q 015304 81 FDC--A--SRSEIEAVLA-LGVSPDRIIYANPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPK 142 (409)
Q Consensus 81 ~~v--a--S~~E~~~a~~-~G~~~~~Ii~~gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~ 142 (409)
+|- . ....+..+++ .++ +|.......+.++++.+++.| +..++++ .+.+..++.+.+..
T Consensus 251 iEqP~~~~d~~~~~~l~~~~~i---PIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~ 320 (398)
T 2pp0_A 251 IEEPLDAYDIEGHAQLAAALDT---PIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAK 320 (398)
T ss_dssp EECCSCTTCHHHHHHHHHHCSS---CEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHH
T ss_pred eeCCCChhhHHHHHHHHhhCCC---CEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHH
Confidence 763 2 4455555544 333 577777778888999888776 4455554 67777777766543
No 236
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=20.93 E-value=2.9e+02 Score=23.56 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCeEEEEEEe-----eCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCcEEeecCCCCcCC---CCCCCHH
Q 015304 176 PLLEAAEASGLSVVGVAFH-----IGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTN---SNTKSFQ 247 (409)
Q Consensus 176 ~~~~~~~~~~l~l~Glh~H-----~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~ldiGGG~~~~~---~~~~~~~ 247 (409)
++-+..+..+ . .+.+| ..-...+++.....++.+++.++.++++|. +++.+..|..... ..+..++
T Consensus 40 ~~~~~~~~~~-~--~~~~h~~~~~~~l~~~~~~~r~~~~~~~~~~i~~A~~lGa---~~v~~~~g~~~~~~~~~~~~~~~ 113 (254)
T 3ayv_A 40 LFQSLRRRFS-G--KLSVHLPFWNLDLLSPDPEVRGLTLRRLLFGLDRAAELGA---DRAVFHSGIPHGRTPEEALERAL 113 (254)
T ss_dssp HHHHHHHHCC-S--CEEEECCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC---SEEEEECCCCTTCCHHHHHHTHH
T ss_pred HHHHHHHHhC-C--CeEEecCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC---CEEEECCCCCcccccccHHHHHH
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCcEEEEcC
Q 015304 248 EAASIIKEALHAYFPNELLPGSSLRVISEP 277 (409)
Q Consensus 248 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~Ep 277 (409)
.+.+.+++.....-.. ++++.+|+
T Consensus 114 ~~~~~l~~l~~~a~~~------gv~l~lEn 137 (254)
T 3ayv_A 114 PLAEALGLVVRRARTL------GVRLLLEN 137 (254)
T ss_dssp HHHHHTHHHHHHHHHH------TCEEEEEC
T ss_pred HHHHHHHHHHHHHhhc------CCEEEEcC
No 237
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=20.81 E-value=3.7e+02 Score=23.67 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCcEEEecCHHHHHHHHhHCCCCeEEEEEecCCCCCCCCCCCCCc-CCCCCcccHHHHHHHHHHcCCeEEE
Q 015304 112 SHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKY-GVDHHPQEIVPLLEAAEASGLSVVG 190 (409)
Q Consensus 112 ~~i~~a~~~gv~~~~vds~~el~~i~~~~~~~~v~lRv~~~~~~~~~~~~~srf-Gi~~~~~~~~~~~~~~~~~~l~l~G 190 (409)
+.++.|+++|+..+.+ +...+.... .++..+.++++... -| |-.. .+.....++.+.+.|.....
T Consensus 45 ~~~~~a~~~~~~av~v-~~~~v~~~~--~~~~~liv~~~~~~----------~~~g~~~-~~~~~~~ve~Ai~~Ga~~v~ 110 (263)
T 1w8s_A 45 YILRLARDAGFDGVVF-QRGIAEKYY--DGSVPLILKLNGKT----------TLYNGEP-VSVANCSVEEAVSLGASAVG 110 (263)
T ss_dssp HHHHHHHHHTCSEEEE-CHHHHHHHC--CSSSCEEEECEECC----------TTCCSSC-CCEESSCHHHHHHTTCSEEE
T ss_pred HHHHHHHhhCCCEEEE-CHHHHHHhh--cCCCcEEEEEeCCC----------CcCCCCc-cchHHHHHHHHHHCCCCEEE
Confidence 4456677899875444 466666655 55567788998532 11 2110 11111122333446888877
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 015304 191 VAFHIGSAATKFAAYRGAIAAAKAVFETAARLGN 224 (409)
Q Consensus 191 lh~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~g~ 224 (409)
++..+|+. +. ...++.+.++.+.+++.+.
T Consensus 111 ~~~nig~~--~~---~~~~~~~~~v~~~~~~~~~ 139 (263)
T 1w8s_A 111 YTIYPGSG--FE---WKMFEELARIKRDAVKFDL 139 (263)
T ss_dssp EEECTTST--TH---HHHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCc--CH---HHHHHHHHHHHHHHHHcCC
Confidence 77777853 22 3345555666777777776
No 238
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Probab=20.61 E-value=2.6e+02 Score=26.39 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=67.3
Q ss_pred eHHHHHHHHHHHHHhCCCcceEEecCcCC------cHHHHHHHHHcCC-cEE--EcCHHHHHHHHh-CCCCCCcEEEeCC
Q 015304 38 DLGVVVTLYNQMISKLPMIHPHYAVKCNP------EPALLEALAALGS-NFD--CASRSEIEAVLA-LGVSPDRIIYANP 107 (409)
Q Consensus 38 d~~~l~~n~~~~~~~~~~~~i~yavKan~------~~~vl~~l~~~G~-g~~--vaS~~E~~~a~~-~G~~~~~Ii~~gp 107 (409)
+.+.=.+.++++|+++|++.+ .+-+|. ...+++.|.+.|+ .+| +.....+..+++ .++ +|...-.
T Consensus 195 ~~~~d~~~v~avR~~~~~~~l--~vDaN~~w~~~~A~~~~~~l~~~~i~~iEqP~~d~~~~~~l~~~~~i---PIa~dE~ 269 (398)
T 4dye_A 195 DCAGDVAILRAVREALPGVNL--RVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGMAQVKAKVRI---PLCTNMC 269 (398)
T ss_dssp CHHHHHHHHHHHHHHCTTSEE--EEECTTCSCHHHHHHHHHHHGGGCCSEEECCSSHHHHHHHHHHHCCS---CEEESSS
T ss_pred CHHHHHHHHHHHHHhCCCCeE--EeeCCCCCCHHHHHHHHHHHhhcCCCEEcCCCCCHHHHHHHHhhCCC---CEEeCCc
Confidence 455667788889998866554 478886 2456677777887 677 334445555444 343 4776666
Q ss_pred CCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCC
Q 015304 108 CKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPK 142 (409)
Q Consensus 108 ~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~ 142 (409)
..+..+++.+++.| +..+++| .+.+..++.+.+..
T Consensus 270 ~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~ 310 (398)
T 4dye_A 270 VVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCET 310 (398)
T ss_dssp CCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHH
Confidence 67788899888776 4566766 67888888776543
No 239
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=20.56 E-value=4.7e+02 Score=23.53 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=54.8
Q ss_pred cEEEeCCCC---CHHHHHHHHHcCCcEEEecCHHH-HHHHHhHC-CCCeEEEEEecCC-CCC--CCCCCCCCcCCCCCcc
Q 015304 101 RIIYANPCK---PVSHIKYAANVGVNLTTFDSVEE-LHKIRKWH-PKCDLLIRIKPPD-DSG--AKHPLDSKYGVDHHPQ 172 (409)
Q Consensus 101 ~Ii~~gp~k---~~~~i~~a~~~gv~~~~vds~~e-l~~i~~~~-~~~~v~lRv~~~~-~~~--~~~~~~srfGi~~~~~ 172 (409)
+++..|.-. ++++.+++.+.|+..+..+.+.+ ++.+.+.. ....+.|-++... ++. ....+....|++ ..
T Consensus 175 ~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~~~~v~~~~~~~~~vylSiDiDvlDpa~aPgtgtp~pgGlt--~~ 252 (305)
T 1woh_A 175 HITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLT--YA 252 (305)
T ss_dssp EEEEEEECCSCCCHHHHHHHHHTTCEEEEHHHHHHCHHHHHTTSCCSSEEEEEEEGGGBCTTTCCCBSSCCSSCBC--HH
T ss_pred cEEEEEeCCCCCCHHHHHHHHHcCCeEEEHHHHHHHHHHHHHHhhCCCcEEEEEeecCCChhhCCCCCCCCCCCCC--HH
Confidence 777776532 67899999999997555544433 23232222 2235777776521 211 111233688999 89
Q ss_pred cHHHHHHHHHHcCCeEEEEEEe
Q 015304 173 EIVPLLEAAEASGLSVVGVAFH 194 (409)
Q Consensus 173 ~~~~~~~~~~~~~l~l~Glh~H 194 (409)
|+.++++.+.+. .+++|+..-
T Consensus 253 e~~~~l~~l~~~-~~vvg~Div 273 (305)
T 1woh_A 253 QGMKILAAAAAN-NTVVGLDLV 273 (305)
T ss_dssp HHHHHHHHHHHH-SEEEEEEEE
T ss_pred HHHHHHHHHhcc-CCEEEEEEE
Confidence 999998887542 367776555
No 240
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=20.51 E-value=1.9e+02 Score=27.27 Aligned_cols=81 Identities=10% Similarity=0.108 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCCcceEEecCcCC---------------cHHHHHHHHHcCC-cEEEcCH----------HH-HHHHHh
Q 015304 42 VVTLYNQMISKLPMIHPHYAVKCNP---------------EPALLEALAALGS-NFDCASR----------SE-IEAVLA 94 (409)
Q Consensus 42 l~~n~~~~~~~~~~~~i~yavKan~---------------~~~vl~~l~~~G~-g~~vaS~----------~E-~~~a~~ 94 (409)
+.+-+++++++.+.-.+ .+|-++ ...+++.|.+.|+ .+++... -+ +..+++
T Consensus 219 ~~eiv~aVr~avg~~~v--~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~ 296 (377)
T 2r14_A 219 PLEVVDAVAEVFGPERV--GIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQ 296 (377)
T ss_dssp HHHHHHHHHHHHCGGGE--EEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcE--EEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHH
Confidence 45557777777752233 234322 3567899999998 7887651 01 223333
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHcC-CcEEEe
Q 015304 95 LGVSPDRIIYANPCKPVSHIKYAANVG-VNLTTF 127 (409)
Q Consensus 95 ~G~~~~~Ii~~gp~k~~~~i~~a~~~g-v~~~~v 127 (409)
. ++ -.|+.+|.. +.++.+.+++.| +..+.+
T Consensus 297 ~-~~-iPvi~~Ggi-~~~~a~~~l~~g~aD~V~i 327 (377)
T 2r14_A 297 R-FK-GGLIYCGNY-DAGRAQARLDDNTADAVAF 327 (377)
T ss_dssp H-CC-SEEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred H-CC-CCEEEECCC-CHHHHHHHHHCCCceEEee
Confidence 2 32 357777876 688888888887 554444
No 241
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=20.43 E-value=1.1e+02 Score=26.45 Aligned_cols=58 Identities=7% Similarity=0.008 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCC-cEEEcC--HHHHHHHHhCCCCCCcEEEeCCCCCH-HHHHHHHHcCCcEEEe
Q 015304 68 PALLEALAALGS-NFDCAS--RSEIEAVLALGVSPDRIIYANPCKPV-SHIKYAANVGVNLTTF 127 (409)
Q Consensus 68 ~~vl~~l~~~G~-g~~vaS--~~E~~~a~~~G~~~~~Ii~~gp~k~~-~~i~~a~~~gv~~~~v 127 (409)
..+++...+.|+ |+-|+. +.|+..+++. .+ +-+++++..... ...+.|++.|...++|
T Consensus 125 ~~~a~~a~~~g~~GvV~sat~p~e~~~ir~~-~~-~~~~vtPGI~~~g~tp~~a~~~Gad~iVV 186 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGTKLDHITQYRRD-FE-KMTIVSPGMGSQGGSYGDAVCAGADYEII 186 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTTCHHHHHHHHHH-CT-TCEEEECCBSTTSBCTTHHHHHTCSEEEE
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHHHHHHHh-CC-CCEEEcCCcccCccCHHHHHHcCCCEEEE
Confidence 668888888998 776664 6888888875 22 345555433221 1466778888875555
No 242
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=20.42 E-value=43 Score=25.10 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=35.5
Q ss_pred CceeEEEEccccCCCCccccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEEecCCC
Q 015304 343 RTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNR 408 (409)
Q Consensus 343 ~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~~~~fn~~~~p~~v~~~~~~~~ 408 (409)
.-..|.|.|.- |+.+.....---..++||.|+|..-+-+...-. -.+ .| .|+|++..|+
T Consensus 29 RfeTYvI~Ger--SG~I~lNGAAArl~~~GD~vII~aY~~~~~~e~---~~~-~P-~vV~vd~~N~ 87 (97)
T 1uhe_A 29 RFSTYVILGKK--RGEICVNGAAARKVAIGDVVIILAYASMNEDEI---NAH-KP-SIVLVDEKNE 87 (97)
T ss_dssp EEEEECEEECS--TTCEEEEGGGGGGCCTTCEEEEEEEEEECHHHH---HHC-CC-EEEEECTTSC
T ss_pred eEEEEEEeecc--CCeEEEchHHHccCCCCCEEEEEECccCCHHHH---hcC-CC-EEEEECCCCC
Confidence 45678888876 544444332111568999999986444443222 222 35 7888887765
No 243
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=20.03 E-value=4.2e+02 Score=22.74 Aligned_cols=106 Identities=8% Similarity=0.092 Sum_probs=64.4
Q ss_pred ccccHHHHHHHHHhhcCCCCCccEEEEeHHH--HHHHHHHHHHhCCCcceEEecCcCCcHHHHHHHHHcCCcEEEcC--H
Q 015304 11 TKEELTEFVRSTILKRQEFDEVPFYILDLGV--VVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCAS--R 86 (409)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~t~P~~v~d~~~--l~~n~~~~~~~~~~~~i~yavKan~~~~vl~~l~~~G~g~~vaS--~ 86 (409)
..++..++++.-+. .|= +++.+.+.. -.+.++++++.+|+..+-+-.-. ...=++...+.|+.|-++. -
T Consensus 27 ~~~~~~~~~~al~~----gGv-~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGtvl--~~d~~~~A~~aGAd~v~~p~~d 99 (224)
T 1vhc_A 27 NADDILPLADTLAK----NGL-SVAEITFRSEAAADAIRLLRANRPDFLIAAGTVL--TAEQVVLAKSSGADFVVTPGLN 99 (224)
T ss_dssp SGGGHHHHHHHHHH----TTC-CEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCC--SHHHHHHHHHHTCSEEECSSCC
T ss_pred CHHHHHHHHHHHHH----cCC-CEEEEeccCchHHHHHHHHHHhCcCcEEeeCcEe--eHHHHHHHHHCCCCEEEECCCC
Confidence 33555555555553 344 566655432 24567778888886555554422 3456677788888555532 2
Q ss_pred HH-HHHHHhCCCCCCcEEEeCCCCCHHHHHHHHHcCCcEEEec
Q 015304 87 SE-IEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFD 128 (409)
Q Consensus 87 ~E-~~~a~~~G~~~~~Ii~~gp~k~~~~i~~a~~~gv~~~~vd 128 (409)
.| ++.+++.|.+ ++ -| +.+++++..|.+.|+..+-+.
T Consensus 100 ~~v~~~ar~~g~~---~i-~G-v~t~~e~~~A~~~Gad~vk~F 137 (224)
T 1vhc_A 100 PKIVKLCQDLNFP---IT-PG-VNNPMAIEIALEMGISAVKFF 137 (224)
T ss_dssp HHHHHHHHHTTCC---EE-CE-ECSHHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHhCCC---EE-ec-cCCHHHHHHHHHCCCCEEEEe
Confidence 34 5677777742 22 25 578899999999998755443
No 244
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*
Probab=20.03 E-value=1.9e+02 Score=27.93 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhCC-CcceEEecCcCC------cHHHHHHHHHcCC-cEE--Ec--CHHHHHHHHh-CCCCCCcEEEe
Q 015304 39 LGVVVTLYNQMISKLP-MIHPHYAVKCNP------EPALLEALAALGS-NFD--CA--SRSEIEAVLA-LGVSPDRIIYA 105 (409)
Q Consensus 39 ~~~l~~n~~~~~~~~~-~~~i~yavKan~------~~~vl~~l~~~G~-g~~--va--S~~E~~~a~~-~G~~~~~Ii~~ 105 (409)
++...+.++++|++++ ++. ..+.+|. ...+++.|.+.|+ .+| +. ....+..+++ .++ +|...
T Consensus 223 ~~~d~~~v~avR~a~G~d~~--L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~i---PIa~d 297 (440)
T 3t6c_A 223 AKSIPRLFDHLRNKLGFSVE--LLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSST---PIAMG 297 (440)
T ss_dssp HHHHHHHHHHHHHHHCSSSE--EEEECTTCSCHHHHHHHHHHTGGGCCSEEECSSCGGGGGGHHHHHHHCCS---CEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHhhhcCCCEEECCCChhhHHHHHHHHhhcCC---CEEeC
Confidence 3456677888999885 444 4589997 2456667777787 677 22 3344544444 343 57777
Q ss_pred CCCCCHHHHHHHHHcC-CcEEEec-----CHHHHHHHHhHCCCC
Q 015304 106 NPCKPVSHIKYAANVG-VNLTTFD-----SVEELHKIRKWHPKC 143 (409)
Q Consensus 106 gp~k~~~~i~~a~~~g-v~~~~vd-----s~~el~~i~~~~~~~ 143 (409)
....+..+++.+++.| +..+++| .+.+..++.+.+...
T Consensus 298 E~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~ 341 (440)
T 3t6c_A 298 ELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELN 341 (440)
T ss_dssp TTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHcCCccceeechhhhCCHHHHHHHHHHHHHc
Confidence 7888899999998876 4555665 688888887766433
Done!