RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015304
(409 letters)
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic
ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria
chlorella virus 1} PDB: 2nv9_A*
Length = 372
Score = 448 bits (1155), Expect = e-158
Identities = 134/390 (34%), Positives = 203/390 (52%), Gaps = 18/390 (4%)
Query: 15 LTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEAL 74
+ V + ILK FY+ +V L +Q P + PHYAVKCN + LL+ +
Sbjct: 1 MNSVVNN-ILKAHPHQTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDEVLLKTM 59
Query: 75 AALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELH 134
NFDCAS SEI+ V+ +GVSP RII+A+ K + + +A + GV++ TFDS EL
Sbjct: 60 CDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELD 119
Query: 135 KIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194
KI +HP C +++RI+ DD A L +K+G + EI LLE A+ + V+G++FH
Sbjct: 120 KIHTYHPNCKMILRIR-CDDPNATVQLGNKFGAN--EDEIRHLLEYAKQLDIEVIGISFH 176
Query: 195 IGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIK 254
+GS + AY AI ++K F A +G+ +LDIGGG + + I
Sbjct: 177 VGSGSRNPEAYYRAIKSSKEAFNEAISVGHK-PYILDIGGGLHADIDEGELSTYMSDYIN 235
Query: 255 EALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSF 314
+A+ +FP + ++ +++EPGRFF L TQ+IGKRV + Y+ N+ YG F
Sbjct: 236 DAIKDFFPED-----TVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGF 290
Query: 315 DWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDW 374
V +++++ L S ++G TCD D + LPEL + DW
Sbjct: 291 SNVIFEKSVPTPQL------LRDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDW 344
Query: 375 LVFSEMGAYTRARGTNFNGYNTAAIPTYVV 404
+ F GAYT T+FNG+ + Y +
Sbjct: 345 VYFPSWGAYTNVLTTSFNGFGEYDV--YYI 372
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet
domain, structural genomics, israel structural
proteomics center, ISPC; 2.05A {Mus musculus}
Length = 448
Score = 440 bits (1134), Expect = e-153
Identities = 141/409 (34%), Positives = 208/409 (50%), Gaps = 32/409 (7%)
Query: 15 LTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEAL 74
L + + + + + F++ DLG +V ++Q + + I P Y VKCN PA+LE L
Sbjct: 21 LGNVIDNYVYEHTLTGKNAFFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEIL 80
Query: 75 AALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELH 134
AALG+ F C+S++E+ V LGVSP+ II+ +PCK VS IKYAA VGVN+ T D+ EL
Sbjct: 81 AALGTGFACSSKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELK 140
Query: 135 KIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFH 194
KI + HP +L+ I +D+ + K+G + LLE A+ + ++GV FH
Sbjct: 141 KIARNHPNAKVLLHIA-TEDNIGGEDGNMKFGTT--LKNCRHLLECAKELDVQIIGVKFH 197
Query: 195 IGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIK 254
+ SA ++ Y A++ A+ VF+ A G M +LDIGGGF+ +E +I
Sbjct: 198 VSSACKEYQVYVHALSDARCVFDMAGEFGFT-MNMLDIGGGFT---GTEIQLEEVNHVIS 253
Query: 255 EALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGE-------------- 300
L YFP GS +++ISEPG ++ SAFTL II K+V
Sbjct: 254 PLLDIYFPE----GSGIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDE 309
Query: 301 -MRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADE 359
Y++NDG YGSF + P + S ++GP+CD D+
Sbjct: 310 PAFVYYMNDGVYGSFASKLSE--DLNTIPEVHKKYKEDEP----LFTSSLWGPSCDELDQ 363
Query: 360 VFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNR 408
+ LPEL V DWL+F MGA + + FN + AI + S+
Sbjct: 364 IVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSFSDW 412
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY
beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei}
SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A*
1njj_A*
Length = 425
Score = 437 bits (1127), Expect = e-153
Identities = 157/412 (38%), Positives = 234/412 (56%), Gaps = 33/412 (8%)
Query: 11 TKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPAL 70
T++ L + + + PF++ DLG +V + LP + P YAVKCN + +
Sbjct: 21 TRDALCKKISMNTCDEGD----PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRV 76
Query: 71 LEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSV 130
L LAALG+ FDCAS +EI+ V +GV P++IIYANPCK +SHI+YA + GV++ TFD V
Sbjct: 77 LGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCV 136
Query: 131 EELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVG 190
+EL K+ K HPK +++RI DDS A+ L K+G ++ +LE A+ + V G
Sbjct: 137 DELEKVAKTHPKAKMVLRIS-TDDSLARCRLSVKFGAK--VEDCRFILEQAKKLNIDVTG 193
Query: 191 VAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAA 250
V+FH+GS +T + + AI+ ++ VF+ LG M +LDIGGGF T F+E A
Sbjct: 194 VSFHVGSGSTDASTFAQAISDSRFVFDMGTELG-FNMHILDIGGGFPGTRDAPLKFEEIA 252
Query: 251 SIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRV------------- 297
+I AL +FP P L +++EPGR++ SAFTL +I K+V
Sbjct: 253 GVINNALEKHFP----PDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAE 308
Query: 298 -HGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDA 356
+ + Y++NDG YGSF+ + YD A+ + P + Y S V+GPTCD
Sbjct: 309 SNAQSFMYYVNDGVYGSFNCILYDHAVVRPLP------QREPIPNEKLYPSSVWGPTCDG 362
Query: 357 ADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPTYVVRSNR 408
D++ + LPE++V +WL+F +MGAYT ++FNG+ + I YVV
Sbjct: 363 LDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTI-YYVVSGLP 413
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP,
group IV decarboxylase, polyami parasitical,
chemotherapy target, putrescine; HET: PLP; 1.60A {Mus
musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Length = 424
Score = 435 bits (1122), Expect = e-152
Identities = 157/391 (40%), Positives = 223/391 (57%), Gaps = 28/391 (7%)
Query: 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEI 89
D+ FY+ DLG ++ + + + LP + P YAVKCN A++ LAA+G+ FDCAS++EI
Sbjct: 36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEI 95
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRI 149
+ V LGV +R+IYANPCK VS IKYAA+ GV + TFDS EL K+ + HPK L++RI
Sbjct: 96 QLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI 155
Query: 150 KPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAI 209
DDS A L K+G + LLE A+ + V+GV+FH+GS T + A+
Sbjct: 156 A-TDDSKAVCRLSVKFGAT--LKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAV 212
Query: 210 AAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGS 269
+ A+ VF+ A +G + M +LDIGGGF + F+E S+I AL YFP++ S
Sbjct: 213 SDARCVFDMATEVGFS-MHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSD----S 267
Query: 270 SLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRN--------------YWINDGKYGSFD 315
+R+I+EPGR++ SAFTL II K+ + + Y++NDG YGSF+
Sbjct: 268 GVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFN 327
Query: 316 WVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
+ YD A K K + Y+S ++GPTCD D + LPE+ V DW+
Sbjct: 328 CILYDHAHVKALL------QKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWM 381
Query: 376 VFSEMGAYTRARGTNFNGYNTAAIPTYVVRS 406
+F MGAYT A + FNG+ I + R
Sbjct: 382 LFENMGAYTVAAASTFNGFQRPNIYYVMSRP 412
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET:
PLP; 1.90A {Homo sapiens}
Length = 471
Score = 437 bits (1125), Expect = e-152
Identities = 163/390 (41%), Positives = 223/390 (57%), Gaps = 29/390 (7%)
Query: 30 DEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEI 89
D+ FY+ DLG ++ + + + LP + P YAVKCN A+++ LAA G+ FDCAS++EI
Sbjct: 46 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEI 105
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRI 149
+ V +LGV P+RIIYANPCK VS IKYAAN GV + TFDS EL K+ + HPK L++RI
Sbjct: 106 QLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI 165
Query: 150 KPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAI 209
DDS A L K+G + LLE A+ + VVGV+FH+GS T + AI
Sbjct: 166 A-TDDSKAVCRLSVKFGAT--LRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAI 222
Query: 210 AAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGS 269
+ A+ VF+ A +G + M +LDIGGGF + F+E +I AL YFP S
Sbjct: 223 SDARCVFDMGAEVGFS-MYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFP----SDS 277
Query: 270 SLRVISEPGRFFTYSAFTLYTQIIGKRV--------------HGEMRNYWINDGKYGSFD 315
+R+I+EPGR++ SAFTL II K++ + Y++NDG YGSF+
Sbjct: 278 GVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFN 337
Query: 316 WVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
+ YD A PL K Y+S ++GPTCD D + LPE+ V DW+
Sbjct: 338 CILYDHAHV--KPLLQKRPKPDEK----YYSSSIWGPTCDGLDRIVERCDLPEMHVGDWM 391
Query: 376 VFSEMGAYTRARGTNFNGYNTAAIPTYVVR 405
+F MGAYT A + FNG+ I YV+
Sbjct: 392 LFENMGAYTVAAASTFNGFQRPTIY-YVMS 420
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 422 bits (1086), Expect = e-146
Identities = 111/374 (29%), Positives = 176/374 (47%), Gaps = 21/374 (5%)
Query: 27 QEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASR 86
++F P +LD V+ Y + + LP + HYA+K P P ++ L A G++FD A+
Sbjct: 51 EQFGA-PLLLLDCDVIRQQYRALKNALPNVTLHYALKPLPHPVVVRTLLAEGASFDLATT 109
Query: 87 SEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLL 146
E+E V + GV D I+ +P K + I+ A G N+ D++ EL K + + +LL
Sbjct: 110 GEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELL 169
Query: 147 IRIKPPDDSGAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYR 206
+R+ +S A L K+G P++ + ++E A+ + + G++FH+GS T Y
Sbjct: 170 VRLS-FRNSEAFADLSKKFGCS--PEQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYV 226
Query: 207 GAIAAAKAVFETAARLGNNKMRVLDIGGGFSFT-NSNTKSFQEAASIIKEALHAYFPNEL 265
AI + V E G + LDIGGGF + + I EAL
Sbjct: 227 EAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPET-- 284
Query: 266 LPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAK 325
+ V++EPGRF A T ++G+ Y+++DG YGSF + +D+A
Sbjct: 285 -----VHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYP 339
Query: 326 CTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTR 385
T + S + GPTCD+ D + LP+L D ++ MGAYT
Sbjct: 340 LTTIKQG---------GELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTS 390
Query: 386 ARGTNFNGYNTAAI 399
A T+FN + A
Sbjct: 391 ATATDFNFFKRAQT 404
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP;
1.65A {Bacillus circulans}
Length = 428
Score = 146 bits (370), Expect = 7e-40
Identities = 71/379 (18%), Positives = 127/379 (33%), Gaps = 49/379 (12%)
Query: 33 PFYILDLGVVVTLYNQMISKL-PMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEA 91
PFY+ D + Y Q+ S+ P I + ++K N L + G + AS E+
Sbjct: 18 PFYLYDGDFIEAHYRQLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELAL 77
Query: 92 VLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI----RKWHPKCDLLI 147
G S + II++ P K S ++ A G+ +SVEEL I K + + I
Sbjct: 78 ARHAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAI 137
Query: 148 RIKPPDDSGAKHP------LDSKYGVDHHPQEIVPLLE-AAEASGLSVVGVAFHIGSAAT 200
RI P D + ++G+D + +++ +G+ + G+
Sbjct: 138 RINP--DKSFGSTAIKMGGVPRQFGMDE--SMLDAVMDAVRSLQFTKFIGIHVYTGTQNL 193
Query: 201 KFAAYRGAIAAAKAVFETAARLGNN---KMRVLDIGGGFS---FTNSNTKSFQEAASIIK 254
+ + K + + +++GGGF F++ + +
Sbjct: 194 NTDSII---ESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEKALDIGKITRTVS 250
Query: 255 EALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIG-KRVHGEMRNYWINDGK--- 310
+ + I E GR+ A T+++ K G + I DG
Sbjct: 251 DYVQEA---RDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKG--EVFVIVDGGMHH 305
Query: 311 ------YGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGH 364
G NY + + + + GP C D +
Sbjct: 306 HAASTFRGRSMRSNYPMEY-------IPVREDSGRRELEKVT--IAGPLCTPEDCLGKDV 356
Query: 365 KLPELEVTDWLVFSEMGAY 383
+P L D + GAY
Sbjct: 357 HVPALYPGDLVCVLNSGAY 375
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate,
decarboxylation, lysin barrel, lyase; HET: PLP MES;
2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB:
1ko0_A*
Length = 425
Score = 144 bits (365), Expect = 4e-39
Identities = 75/383 (19%), Positives = 136/383 (35%), Gaps = 63/383 (16%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAV 92
P ++ D ++ + + ++ +A K +L + G D S EIE
Sbjct: 27 PVWVYDAQIIRRQIAAL-KQFDVVR--FAQKACSNIHILRLMREQGVKVDSVSLGEIERA 83
Query: 93 LALGVSP----DRIIYANPCKPVSHIKYA--ANVGVNLTTFDSVEELHKIRKWHPKCDLL 146
LA G +P D I++ + ++ + VN SV+ L ++ + P +
Sbjct: 84 LAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVN---AGSVDMLDQLGQVSPGHRVW 140
Query: 147 IRIKPPDDSGAK-HP------LDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAA 199
+R+ P G +SK+G+ + ++ L+ + L +VG+ HIGS
Sbjct: 141 LRVNP--GFGHGHSQKTNTGGENSKHGIWYT--DLPAALDVIQRHHLQLVGIHMHIGSGV 196
Query: 200 TKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFS---FTNSNTKSFQEAASIIKEA 256
Y A+ G + ++ + GGG S + + A
Sbjct: 197 D----YAHLEQVCGAMVRQVIEFGQD-LQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAA 251
Query: 257 LHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGK------ 310
G +++ EPGRF + L TQ+ R++ + D
Sbjct: 252 REQI---ARHLGHPVKLEIEPGRFLVAQSGVLITQVRS-VKQMGSRHFVLVDAGFNDLMR 307
Query: 311 ---YGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAAD-------EV 360
YGS+ + + L A + + V GP C++ D
Sbjct: 308 PAMYGSY----HH-----ISALA-ADGRSLEHAPTVETV--VAGPLCESGDVFTQQEGGN 355
Query: 361 FSGHKLPELEVTDWLVFSEMGAY 383
LPE++ D+LV + GAY
Sbjct: 356 VETRALPEVKAGDYLVLHDTGAY 378
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A
{Campylobacter jejuni subsp}
Length = 418
Score = 142 bits (359), Expect = 2e-38
Identities = 61/392 (15%), Positives = 124/392 (31%), Gaps = 53/392 (13%)
Query: 33 PFYILDLGVVVTLYNQM--ISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIE 90
P YIL+ + + + + A+K ++ + C+ E +
Sbjct: 45 PAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAK 104
Query: 91 AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIK 150
+ + Y+ K I A++ ++ F+S+ + HK + K L +R
Sbjct: 105 FAKE-YMDKEIHTYSPAFKE-DEIGEIASLSHHIV-FNSLAQFHKFQSKTQKNSLGLRCN 161
Query: 151 PPDDSGAKHPL------DSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAA 204
+ S A L S+ G+ + ++ G+ FH + A
Sbjct: 162 V-EFSLAPKELYNPCGRYSRLGIRAK--------DFENVDLNAIEGLHFHALCEESADAL 212
Query: 205 YRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNE 264
K E + M+ ++ GGG T ++ ++ K Y
Sbjct: 213 EA----VLKVFEEKFGKWIGQ-MKWVNFGGGHHITKKG-YDVEKLIALCKNFSDKY---- 262
Query: 265 LLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDG---------KYGSFD 315
++V EPG + L ++ + E + ++
Sbjct: 263 -----GVQVYLEPGEAVGWQTGNLVASVVD-IIENEKQIAILDTSSEAHMPDTIIMPYT- 315
Query: 316 WVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
+ A+ ++ K Y + G TC A D + +L++ D +
Sbjct: 316 ---SEVLNARILATRENEKISDLKENEFAYL--LTGNTCLAGDVMGEYAFDKKLKIGDKI 370
Query: 376 VFSEMGAYTRARGTNFNGYNTAAIPTYVVRSN 407
VF + YT + T FNG + ++
Sbjct: 371 VFLDQIHYTIVKNTTFNGIRLPNL--MLLDHK 400
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG,
structural genomics; 2.50A {Sinorhizobium meliloti}
Length = 365
Score = 137 bits (347), Expect = 4e-37
Identities = 54/392 (13%), Positives = 112/392 (28%), Gaps = 67/392 (17%)
Query: 33 PFYILDLGVVVTLYNQM--ISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIE 90
P+Y++D + ++ + + A+KC ++ + + +S E+
Sbjct: 5 PYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVR 64
Query: 91 AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIK 150
+ I + + F+S+ +L + +R+
Sbjct: 65 LGRERFGKETHAYSVAYGD--NEIDEVVSHADKI-IFNSISQLERFADKAAGIARGLRLN 121
Query: 151 PPDDSGAKHPL------DSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAA 204
P S + L S+ G + E + G H F
Sbjct: 122 -PQVSSSSFDLADPARPFSRLG--------EWDVPKVERVMDRINGFMIHNNCENKDFGL 172
Query: 205 YRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNE 264
+ + E L + + +GGG FT + ++ ++ Y
Sbjct: 173 F---DRMLGEIEERFGALIAR-VDWVSLGGGIHFTGDD-YPVDAFSARLRAFSDRY---- 223
Query: 265 LLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDG---------KYGSFD 315
+++ EPG + TL ++ ++ ++ Y
Sbjct: 224 -----GVQIYLEPGEASITKSTTLEVTVLD-TLYNGKNLAIVDSSIEAHMLDLLIYRET- 276
Query: 316 WVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWL 375
+ S +Y + G +C A D EL+V D +
Sbjct: 277 -----AKVL-------------PNEGSHSYM--ICGKSCLAGDVFGEFRFAEELKVGDRI 316
Query: 376 VFSEMGAYTRARGTNFNGYNTAAIPTYVVRSN 407
F + YT + FNG AI + +
Sbjct: 317 SFQDAAGYTMVKKNWFNGVKMPAI--AIRELD 346
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct
genomics, riken spring-8 center; 1.99A {Aquifex
aeolicus}
Length = 420
Score = 136 bits (346), Expect = 2e-36
Identities = 91/378 (24%), Positives = 148/378 (39%), Gaps = 62/378 (16%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAV 92
P Y+ + + P YAVK N P L++ L LG+ D S E+
Sbjct: 35 PLYVYSSNFIKERFEAYRKAFPDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLA 94
Query: 93 LALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI----RKWHPKCDLLIR 148
G+ P+RI+YA K + A + + + +S +EL + K K + IR
Sbjct: 95 KKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIR 154
Query: 149 IKPPDDSGAK-HP------LDSKYGVDHHPQEIVPLLE-AAEASGLSVVGVAFHIGSAAT 200
+ P D K HP SK+GVD +E E A++ L +VG+ HIGS
Sbjct: 155 VNP--DVDPKTHPYIATGMQKSKFGVDI--REAQKEYEYASKLENLEIVGIHCHIGSQIL 210
Query: 201 KFAAYRGAIAAAKAVFETAARLGNN--KMRVLDIGGGF--SFTNSNTK-SFQEAASIIKE 255
+ YR A + V L ++ LDIGGG + + + + Q+ A ++K+
Sbjct: 211 DISPYR---EAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKD 267
Query: 256 ALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIG-KRVHGEMRNYWINDGK---- 310
L ++I EPGR +A L TQ+ K +++ I D
Sbjct: 268 LLENV---------KAKIILEPGRSIMGNAGILITQVQFLK--DKGSKHFIIVDAGMNDL 316
Query: 311 -----YGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHK 365
Y + Y I + T + + + GP C+ D + +
Sbjct: 317 IRPSIYNA-----YHHIIP----------VETKERKKVVAD--IVGPICETGDFLALDRE 359
Query: 366 LPELEVTDWLVFSEMGAY 383
+ E++ ++L GAY
Sbjct: 360 IEEVQRGEYLAVLSAGAY 377
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A
{Helicobacter pylori} PDB: 3c5q_A*
Length = 425
Score = 135 bits (343), Expect = 6e-36
Identities = 98/380 (25%), Positives = 149/380 (39%), Gaps = 64/380 (16%)
Query: 33 PFYILDLGVVVT---LYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEI 89
PFY+ D + Y + YA+K N ++L LA L S DC S EI
Sbjct: 34 PFYLYDFDKIKQAFLNYKEAFKGRK-SLICYALKANSNLSILSLLAHLESGADCVSIGEI 92
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI----RKWHPKCDL 145
+ L G+ P RI+++ K I+ A + + +S EL I + K +
Sbjct: 93 QRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARI 152
Query: 146 LIRIKPPDDSGAK-HP------LDSKYGVDHHPQEIVPLLEAAEAS-GLSVVGVAFHIGS 197
IRI P + AK HP ++K+GV +E + + A+ S L V V FHIGS
Sbjct: 153 SIRINP--NIDAKTHPYISTGLKENKFGVGE--KEALEMFLWAKKSAFLEPVSVHFHIGS 208
Query: 198 AATKFAAYRGAIAAAKAVFETAARLGNN--KMRVLDIGGGF--SFTNSNTKSFQEAASII 253
A++ V + A L +R D+GGG S+ N T + A I
Sbjct: 209 QLLDLEPII---EASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGI 265
Query: 254 KEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGK--- 310
AL G L +I EPGR + L TQ++ ++ + + + I D
Sbjct: 266 LNALQ---------GLDLTIICEPGRSIVAESGELITQVLYEK-KAQNKRFVIVDAGMND 315
Query: 311 ------YGSFDWVNYD-EAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSG 363
Y + + I + + V GP C+++D
Sbjct: 316 FLRPSLYHAK----HAIRVITP-----------SKGREISPCD--VVGPVCESSDTFLKD 358
Query: 364 HKLPELEVTDWLVFSEMGAY 383
LPELE D + ++GAY
Sbjct: 359 AHLPELEPGDKIAIEKVGAY 378
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Length = 443
Score = 134 bits (340), Expect = 2e-35
Identities = 86/382 (22%), Positives = 145/382 (37%), Gaps = 65/382 (17%)
Query: 33 PFYILDLGVVV---TLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEI 89
PFY+ + +++ + + YA+K N A+L ALA LG+ D S+ EI
Sbjct: 50 PFYVYSRATIERHFRVFHDAFADMD-TLVTYALKANSNQAVLTALAKLGAGADTVSQGEI 108
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI----RKWHPKCDL 145
LA G+ +RI+++ K + +A G+ +S EL + +
Sbjct: 109 RRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPV 168
Query: 146 LIRIKPPDDSGAK-HP------LDSKYGVDHHPQEIVPLLE-AAEASGLSVVGVAFHIGS 197
+RI P D AK H ++K+G+ + AA GL+VVG+ HIGS
Sbjct: 169 SLRINP--DVDAKTHAKISTGKSENKFGIPRD--KARAAYARAASLPGLNVVGIDMHIGS 224
Query: 198 AATKFAAYRGAIAAAKAVFETAARLGNN--KMRVLDIGGGF--SFTNSNTK--SFQEAAS 251
+ A + E L + +R +D+GGG + NT A
Sbjct: 225 QIIDLEPFD---NAFALMAELVKELQADGHNIRHVDVGGGLGIPYRTPNTPPPPPVAYAQ 281
Query: 252 IIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIG-KRVHGEMRNYWINDGK 310
I+ + + L+ + EPGR +A L T++I K G+ +N+ I D
Sbjct: 282 IVAKHIKPL---------GLKTVFEPGRLIVGNAGLLVTEVIFVK--EGDAKNFVIVDAA 330
Query: 311 ---------YGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVF 361
Y +F P+ + + + GP C+ D +
Sbjct: 331 MNDLIRPTLYDAFH---------DIRPVIMPN----DNAPRIRAD--FVGPVCETGDYLG 375
Query: 362 SGHKLPELEVTDWLVFSEMGAY 383
++ + D + GAY
Sbjct: 376 LDREVAKPAPGDLIAICTTGAY 397
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold,
lyase, structural genomi NPPSFA; HET: PLP; 1.70A
{Thermotoga maritima}
Length = 386
Score = 129 bits (328), Expect = 3e-34
Identities = 74/372 (19%), Positives = 131/372 (35%), Gaps = 63/372 (16%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMI--HPHYAVKCNPEPALLEALAALGSNFDCASRSEIE 90
P Y+ + + + P +AVK N P LL+ L G D ++ E+
Sbjct: 14 PTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELL 73
Query: 91 AVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPK-CDLLIRI 149
A GV +++ K +++ V + DS EE+ R+ +P+ + IR+
Sbjct: 74 AAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRV 133
Query: 150 KPPDDSGAK-HP------LDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKF 202
P + AK HP K+G+ ++ +++ G+ HIGS T+
Sbjct: 134 NP--EVDAKTHPHISTGLKKHKFGIPLE--DLDSF--MERFRSMNIRGLHVHIGSQITRV 187
Query: 203 AAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFT-NSNTKSFQEAASIIKEALHAYF 261
+ A V + R ++IGGG+ + + L
Sbjct: 188 EPFV---EAFSKVVRASERY---GFEEINIGGGWGINYSGEELDLSSYREKVVPDL---- 237
Query: 262 PNELLPGSSLRVISEPGRFFTYSAFTLYTQIIG-KRVHGEMRNYWINDGK---------Y 311
RVI E GR+ + L +++ K + + + DG Y
Sbjct: 238 ------KRFKRVIVEIGRYIVAPSGYLLLRVVLVK--RRHNKAFVVVDGGMNVLIRPALY 289
Query: 312 GSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEV 371
+ Y + +G + V GP C++ D + +LPE+E
Sbjct: 290 SA-----YHRIF-----------VLGKQGKEMRAD--VVGPLCESGDVIAYDRELPEVEP 331
Query: 372 TDWLVFSEMGAY 383
D + GAY
Sbjct: 332 GDIIAVENAGAY 343
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine
biosynthesis, structural genomics, NYSGXRC, PSI; HET:
LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP:
b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Length = 434
Score = 129 bits (328), Expect = 6e-34
Identities = 82/399 (20%), Positives = 140/399 (35%), Gaps = 67/399 (16%)
Query: 33 PFYILDLGVVVTLYNQMISKLPMIHP--------HYAVKCNPEPALLEALAALGSNFDCA 84
P Y++ + YN+ I YA K N A+ LA LG D
Sbjct: 31 PLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVV 90
Query: 85 SRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI----RKWH 140
S E+ V +I++ CK I + DS+ EL I ++
Sbjct: 91 SGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELG 150
Query: 141 PKCDLLIRIKPPDDSGAK-HP------LDSKYGVDHHPQEIVPLLE-AAEASGLSVVGVA 192
++ RI P + K HP +K+G+D + ++ A E ++VVGV
Sbjct: 151 ETANVAFRINP--NVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYVNVVGVH 208
Query: 193 FHIGSAATKFAAYRGAIAAAKAVFETAARLGNN--KMRVLDIGGGF--SFTNSNTK-SFQ 247
HIGS T + + + V + L ++ +++GGG + + +
Sbjct: 209 CHIGSQLTDISPFI---EETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQIPTQK 265
Query: 248 EAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSA-FTLYTQIIGKRVHGEMRNYWI 306
+ A I + Y +P +I EPGR +A + L + + + +
Sbjct: 266 DLADAIINTMLKYKDKVEMP----NLILEPGRSLVATAGYLLGK--VHHIKETPVTKWVM 319
Query: 307 NDGK---------YGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAA 357
D Y + Y I K + + G C+++
Sbjct: 320 IDAGMNDMMRPAMYEA-----YHHIINC-----------KVKNEKEVVS--IAGGLCESS 361
Query: 358 DEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNT 396
D +L ++EV D L ++GAY + N YN
Sbjct: 362 DVFGRDRELDKVEVGDVLAIFDVGAYGISMANN---YNA 397
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center
for structural genomics of infectious diseases, CSGI;
1.80A {Vibrio cholerae}
Length = 441
Score = 129 bits (328), Expect = 7e-34
Identities = 94/380 (24%), Positives = 148/380 (38%), Gaps = 65/380 (17%)
Query: 33 PFYILDLGVVV---TLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEI 89
P Y+ + +++ + P YAVK N +L LA LGS FD S E+
Sbjct: 53 PLYVYSRATLERHWHAFDKSVGDYP-HLICYAVKANSNLGVLNTLARLGSGFDIVSVGEL 111
Query: 90 EAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI----RKWHPKCDL 145
E VLA G P +++++ K + +K A + + +S EL ++ + K +
Sbjct: 112 ERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPI 171
Query: 146 LIRIKPPDDSGAK-HP------LDSKYGVDHHPQEIVPLLE-AAEASGLSVVGVAFHIGS 197
+RI P D AK HP D+K+G+ + A L V G+ HIGS
Sbjct: 172 SLRINP--DVDAKTHPYISTGLRDNKFGITF--DRAAQVYRLAHSLPNLDVHGIDCHIGS 227
Query: 198 AATKFAAYRGAIAAAKAVFETAARLGNN--KMRVLDIGGGF--SFTNSNTKSFQEAASII 253
T A + A + L +R LD+GGG + + E A +
Sbjct: 228 QLTALAPFI---DATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKAL 284
Query: 254 KEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIG-KRVHGEMRNYWINDGK-- 310
+ L L +I EPGR +A L T++ K H E +N+ I D
Sbjct: 285 LDRLER--------HRDLELIFEPGRAIAANAGVLVTKVEFLK--HTEHKNFAIIDAAMN 334
Query: 311 -------YGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSG 363
Y ++ + I L +G ++TY+ + GP C+ +D
Sbjct: 335 DLIRPALYQAW------QDII---------PLRPRQGEAQTYD--LVGPVCETSD-FLGK 376
Query: 364 HKLPELEVTDWLVFSEMGAY 383
+ L+ D L GAY
Sbjct: 377 DRDLVLQEGDLLAVRSSGAY 396
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine
biosynthesis, STRU genomics, TB structural genomics
consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium
tuberculosis} PDB: 1hkv_A* 1hkw_A
Length = 467
Score = 124 bits (313), Expect = 1e-31
Identities = 79/405 (19%), Positives = 134/405 (33%), Gaps = 63/405 (15%)
Query: 33 PFYILDLGVVVTLYNQMISKL-PMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEA 91
P +++D + + + + HYA K + ++ G D + E+
Sbjct: 43 PLFVIDEDDFRSRCRETAAAFGSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAV 102
Query: 92 VLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKI----RKWHPKCDLLI 147
L P+RI K VS + A GV DS+ E+ ++ + D+L+
Sbjct: 103 ALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLV 162
Query: 148 RIKPPDDSGAK-HP------LDSKYGVDHHPQEIVPLLE-AAEASGLSVVGVAFHIGSAA 199
R+ A H D K+G+ + + L +VG+ HIGS
Sbjct: 163 RLTV--GVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQI 220
Query: 200 TKFAAYRGAIAAAKAVFETAARLGNN-------KMRVLDIGGGF--SFTNSNT-KSFQEA 249
+ AA V + ++ +D+GGG S+ S+ E
Sbjct: 221 FDVDGFE---LAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAEL 277
Query: 250 ASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSA-FTLYTQIIGKRVH---GEMRNYW 305
A+ + + LP +++ EPGR TLY K V R Y
Sbjct: 278 AAKLGTIVSDESTAVGLPT--PKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYV 335
Query: 306 INDGK---------YGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDA 356
DG YG+ YD + S + G C++
Sbjct: 336 SVDGGMSDNIRTALYGAQ----YDVRLVS----------RVSDAPPVPAR--LVGKHCES 379
Query: 357 ADEVFSGHKLP-ELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIP 400
D + +P ++ D + + GAY + + YN P
Sbjct: 380 GDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSR---YNMVGRP 421
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein,
structural genomics, PSI-biology, protei structure
initiative; 3.10A {Escherichia coli}
Length = 666
Score = 121 bits (306), Expect = 3e-30
Identities = 57/263 (21%), Positives = 99/263 (37%), Gaps = 30/263 (11%)
Query: 57 HPHYAVKCNPEPALLEALAALGSN--FDCASRSEIEAVLALGVSPDRIIYANPCKPVSHI 114
Y +K N ++E+L G + S++E+ AVLA +I N K +I
Sbjct: 121 FLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYI 180
Query: 115 KYA---ANVGVNLT-TFDSVEELHKI----RKWHPKCDLLIRIKPPDDSGAKHP----LD 162
+ A +G + + + E+ + + + L +R + K
Sbjct: 181 RLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEK 240
Query: 163 SKYGVDHHPQEIVPLLEAAEASGL--SVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAA 220
SK+G+ +++ L+E +G S+ + FH+GS + + +
Sbjct: 241 SKFGLAAT--QVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELH 298
Query: 221 RLGNNKMRVLDIGGGF---------SFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSL 271
+LG N ++ D+GGG S E A+ I A+ LP
Sbjct: 299 KLGVN-IQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPH--P 355
Query: 272 RVISEPGRFFTYSAFTLYTQIIG 294
VI+E GR T L + IIG
Sbjct: 356 TVITESGRAVTAHHTVLVSNIIG 378
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A
{Vibrio vulnificus}
Length = 648
Score = 115 bits (290), Expect = 4e-28
Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 35/265 (13%)
Query: 60 YAVKCNPEPALLEALAALGSN-------FDCASRSEIEAVLALGVSPDRIIYANPCKPVS 112
Y +K N + +++ + A + + S+ E+ AVLA+ +I N K
Sbjct: 102 YPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHASSVIVCNGYKDRE 161
Query: 113 HIKYA---ANVGVNLT-TFDSVEELHKI----RKWHPKCDLLIRIKPPDDSGAKHP---- 160
+I+ A +G + + + EL + + L IRI+ K
Sbjct: 162 YIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVTPRLGIRIRLASQGAGKWQASGG 221
Query: 161 LDSKYGVDHHPQEIVPLLEAAEASGL--SVVGVAFHIGSAATKFAAYRGAIAAAKAVFET 218
SK+G+ +++ ++ + ++ V FH+GS R + + +
Sbjct: 222 EKSKFGLSAS--QVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCE 279
Query: 219 AARLGNNKMRVLDIGGGF---------SFTNSNTKSFQEAASIIKEALHAYFPNELLPGS 269
LG N + D+GGG +NS E A I + + P
Sbjct: 280 LRTLGAN-ITYFDVGGGLAIDYDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPM- 337
Query: 270 SLRVISEPGRFFTYSAFTLYTQIIG 294
+ISE GR T L + +IG
Sbjct: 338 -PVIISESGRSLTAHHAVLISNVIG 361
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics,
PSI-biology, protei structure initiative; HET: PLP;
3.00A {Campylobacter jejuni subsp}
Length = 619
Score = 115 bits (289), Expect = 4e-28
Identities = 53/297 (17%), Positives = 107/297 (36%), Gaps = 36/297 (12%)
Query: 60 YAVKCNPEPALLEALAALGSN----FDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIK 115
Y +K N P ++ L LG + + S++E+ +A I N K I
Sbjct: 83 YPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITV-NGFKDRELIN 141
Query: 116 YAA---NVGVNLT-TFDSVEELHKI-----RKWHPKCDLLIRIKPPDDSGAKHP------ 160
+G N+T T + + EL I ++ PK ++ +R++ S
Sbjct: 142 IGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRL--HSAGVGIWAKSGG 199
Query: 161 LDSKYGVDHHPQEIVPLLEAAEASGL--SVVGVAFHIGSAATKFAAYRGAIAAAKAVFET 218
++SK+G+ E++ + + + L + FH+GS T+ + A+ A ++
Sbjct: 200 INSKFGLTST--ELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTE 257
Query: 219 AARLGNNKMRVLDIGGGF-------SFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSL 271
++G ++ +++GGG S + +E A+ + L +
Sbjct: 258 LRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLE--P 315
Query: 272 RVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTP 328
+ E GRF + L ++ E + K + P
Sbjct: 316 DIFIESGRFVAANHAVLIAPVLELF-SQEYAENKLILKKQNPKLIDELYDLYKSIKP 371
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 6e-05
Identities = 50/337 (14%), Positives = 91/337 (27%), Gaps = 125/337 (37%)
Query: 1 MGGQRVTTVVTKEELTEFVRSTILKRQEFDEVPFYILDLGVVVTLYN-QMISKLPMIHPH 59
+ G + + K L + +T++K +E ++ ++++K P
Sbjct: 96 LEGNDIHALAAK--LLQENDTTLVKTKE------------LIKNYITARIMAKRPFDKKS 141
Query: 60 YAVKCNPEPALLEA-------LAAL----GSN---FDCASRSEIEAVLALGVSPDRIIYA 105
AL A L A+ G+ F+ E+ R +Y
Sbjct: 142 -------NSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----EL-----------RDLYQ 178
Query: 106 NPCKPVSH--IKYAANVGVNLTTFDSVEELHKIRKWHPK-CDLLIRIKPPDDSGAKHPLD 162
+ IK++A L + K + ++L ++ P ++ K L
Sbjct: 179 TY-HVLVGDLIKFSAETLSEL-----IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 163 S--------------KYGV-----DHHPQEIVPLLEAAEASGLSVV-------------- 189
S Y V P E+ L+ A +V
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 190 --------GVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNK---MRVLDIGGGFSF 238
V F IG + AY + E + M L I
Sbjct: 293 FVSVRKAITVLFFIGVRCYE--AYPNTSLPPSIL-EDSLENNEGVPSPM--LSISN---- 343
Query: 239 TNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVIS 275
+ ++ + + N LP IS
Sbjct: 344 -----LTQEQVQDYVNKT------NSHLPAGKQVEIS 369
Score = 43.9 bits (103), Expect = 1e-04
Identities = 39/220 (17%), Positives = 60/220 (27%), Gaps = 78/220 (35%)
Query: 81 FDCASRSEIEAVLALGVSPDRIIYANPCKPVSH---------------IKYAANVGVNLT 125
++ A + G S I+ NP H + + V L
Sbjct: 1646 WNRADNHFKDT---YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 126 T---FDSV-EELHKIRKWHPKCDL-------------------LIR---IKPPDDSGAKH 159
T F + E K L ++ + P D + A H
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 160 PLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETA 219
L G E L A+ A +S+ + + YRG + AV
Sbjct: 1763 SL----G------EYAAL--ASLADVMSI--------ESLVEVVFYRG-MTMQVAVPRDE 1801
Query: 220 ARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHA 259
N M ++ G + AAS +EAL
Sbjct: 1802 LGRSNYGMIAINPG-------------RVAASFSQEALQY 1828
Score = 42.0 bits (98), Expect = 4e-04
Identities = 39/199 (19%), Positives = 61/199 (30%), Gaps = 59/199 (29%)
Query: 205 YRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNE 264
Y+ AA+ V+ A + GFS + I+ P
Sbjct: 1636 YK-TSKAAQDVWNRADNHFKDTY-------GFSILD-----------IVINN-----PVN 1671
Query: 265 L---LPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDE 321
L G + I E YSA + I+ ++ E IN+ S+ + +
Sbjct: 1672 LTIHFGGEKGKRIRE-----NYSAMI-FETIVDGKLKTEKIFKEINE-HSTSYTFRSEKG 1724
Query: 322 AIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPE----------LEV 371
++ T T + K SK P AD F+GH L E + +
Sbjct: 1725 LLSA-TQFTQPALTLMEKAAFEDLKSKGLIP----ADATFAGHSLGEYAALASLADVMSI 1779
Query: 372 TD--WLVFSEMGAYTRARG 388
+VF RG
Sbjct: 1780 ESLVEVVF--------YRG 1790
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 5e-04
Identities = 54/386 (13%), Positives = 99/386 (25%), Gaps = 159/386 (41%)
Query: 1 MGGQRVTTVVTKEELT-EFVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPH 59
+ G K + + S ++ + ++ F++ +L
Sbjct: 158 VLG------SGKTWVALDVCLSYKVQCKMDFKI-FWL-NLK------------------- 190
Query: 60 YAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAAN 119
CN +LE L L D + + S+IK +
Sbjct: 191 ---NCNSPETVLEMLQKLLYQIDPN-------------------WTSRSDHSSNIKLRIH 228
Query: 120 VGVNLTTFDSVEELHKI--RKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEIVPL 177
EL ++ K + C LL+ L + V
Sbjct: 229 --------SIQAELRRLLKSKPYENC-LLV-------------LL-----N------VQN 255
Query: 178 LEAAEASGLSVVGVAFHIGS---AATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGG 234
+A AF++ T+F K V + + + +
Sbjct: 256 AKAWN---------AFNLSCKILLTTRF----------KQVTDFLSAATTTHISLDHHSM 296
Query: 235 GFSFTNSNTKS-FQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQII 293
T KS + + L P E+L + +S II
Sbjct: 297 T--LTPDEVKSLLLKYLDCRPQDL----PREVLTTNPR-RLS----------------II 333
Query: 294 GKRVHGEMRNYWINDGKYGSFDWVNYDEAIAKCTPLTLASSLT--TSKGLSRTYNS-KVF 350
+ + + W N + VN D+ + SSL + ++ VF
Sbjct: 334 AESIR-DGLATWDN------WKHVNCDKLTT-----IIESSLNVLEPAEYRKMFDRLSVF 381
Query: 351 GPTCDAADEVFSGHKLPE--LEVTDW 374
P +P L + W
Sbjct: 382 -P-----PSA----HIPTILLSLI-W 396
Score = 31.7 bits (71), Expect = 0.45
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 10/88 (11%)
Query: 18 FVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAAL 77
F+ I IL+ + Y I P Y N A+L+ L +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---NDPKYERLVN---AILDFLPKI 555
Query: 78 GSNFDCASRSEIEAVLALGVS-PDRIIY 104
N S+ +L + + D I+
Sbjct: 556 EENL---ICSKYTDLLRIALMAEDEAIF 580
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 33.4 bits (77), Expect = 0.12
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 54 PMIHPHYAVKCNPEPALLEALAALGSNFDCA-------SRSEIEAVLALGVSPDRIIYA 105
P+I P + C+ E L++ L L + + EI V +L Y
Sbjct: 197 PIITPRFVPSCSNE--LMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSL--HKKSNFYG 251
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin
synthesis, ASB locus, structu genomics, PSI-2, protein
structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus
anthracis}
Length = 286
Score = 33.2 bits (76), Expect = 0.14
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 156 GAKHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAV 215
H + + + L+ L + ++ ++ + + A + I + +
Sbjct: 35 WGTHAQNLYMQEYETTERELNCLKDK---TLEITMISDYLDISLS--ADFEKTIEKCEQL 89
Query: 216 FETAARLGNNKMRV 229
A NK+R
Sbjct: 90 AILANWFKTNKIRT 103
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 32.1 bits (72), Expect = 0.38
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 74 LAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF 127
L L + A +G+ +RII++ H++ V L T
Sbjct: 555 LWLLRFPAVGEPNIQQYAQ-NMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTP 607
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 31.2 bits (71), Expect = 0.61
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 54 PMIHPHYAVKCNPEPALLEALAALGSNFDCA-------SRSEIEAVLAL 95
P++ P +++ C+ L+ L + D +R E+EAV L
Sbjct: 230 PIVTPRFSLSCSET--LMGELGNIAKTRDLHIQSHISENRDEVEAVKNL 276
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix,
two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Length = 236
Score = 29.6 bits (66), Expect = 1.6
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 179 EAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAV 215
A +G++ V ++ A K A A A
Sbjct: 195 VTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAK 231
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing
acyl-homoserine lactone, helix-turn-helix, transcription
factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas
aeruginosa}
Length = 237
Score = 29.2 bits (65), Expect = 2.2
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 179 EAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAV 215
E + V FHI +A K + A A KA
Sbjct: 195 EIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAY 231
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA
binding motif, alpha/beta/alpha sandwich; HET: LAE;
1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2
d.110.5.1 PDB: 1h0m_A*
Length = 234
Score = 28.9 bits (64), Expect = 2.5
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 179 EAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAV 215
E A+ G+ V + A +F A A A+
Sbjct: 193 EIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAI 229
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 29.4 bits (66), Expect = 2.6
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 74 LAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAANVGVNLTTF 127
L L + +R A A GV R+++ ++ + + L T
Sbjct: 409 LWLLSGPGEADARLRAFAH-AQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTH 461
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 29.2 bits (66), Expect = 2.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 186 LSVVGVAFHIGSAATKFAAYRGAIAAAKAVFET 218
SV+ AF +G A+ A+ A AA VF+
Sbjct: 332 FSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4
PDB: 1i6n_A
Length = 278
Score = 28.9 bits (65), Expect = 2.9
Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 177 LLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGF 236
L E + + + + + + I K + ET LG + +
Sbjct: 51 LAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVVA--VPLVT 108
Query: 237 SFTNSNTKSFQEAASIIKEAL 257
+ + + ++ E
Sbjct: 109 EQKIVKEEIKKSSVDVLTELS 129
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle,
zinc-binding domain, apoptosis/apoptosis inhibitor
complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB:
3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A*
3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Length = 121
Score = 27.6 bits (61), Expect = 3.1
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 123 NLTTFDSVEELHKIRKWHPKCDLLIRIKPPD 153
+ + E H KW+P C L+ K +
Sbjct: 72 DWKPSEDPWEQHA--KWYPGCKYLLEQKGQE 100
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 28.4 bits (64), Expect = 4.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 212 AKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSF 246
A+ + E A + N K+ D+ GG +FT ++T SF
Sbjct: 138 AREISELAGKARNGKLSQADMEGG-TFTVNSTGSF 171
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium
meliloti} PDB: 3ju2_A
Length = 275
Score = 28.2 bits (63), Expect = 4.2
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 177 LLEAAEASGLSVVGV-AFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGG 235
A+GL + G+ A + AI + + AA LG + + ++ GG
Sbjct: 50 AGRIVRANGLKLTGLCRGGFFPAPDA-SGREKAIDDNRRAVDEAAELGADCLVLV-AGGL 107
Query: 236 FSFTNSNTKSFQEAASIIKEAL 257
+ + + + I L
Sbjct: 108 PGGSKNIDAARRMVVEGIAAVL 129
>2po1_A Probable exosome complex exonuclease 1; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Length = 249
Score = 28.0 bits (63), Expect = 5.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 247 QEAASIIKEALHAYFPNELLPGSSLRVISE 276
E + +IK AL E+ P +++ V E
Sbjct: 99 IEISKVIKGALEPALILEMFPRTAIDVFIE 128
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist,
antagonist, LUXR, acylated homoseri lactone,
transcription factor; HET: HL6; 2.00A {Chromobacterium
violaceum} PDB: 3qp5_A*
Length = 265
Score = 27.9 bits (62), Expect = 5.1
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 179 EAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAV 215
E A +S V FH+ + K A A +
Sbjct: 217 EIATILNISERTVKFHVANVIRKLNANNRTHAIVLGM 253
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 28.2 bits (63), Expect = 5.5
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 23/95 (24%)
Query: 195 IGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIK 254
+G AA + A + GA V+ TA +K + +++ +S T F++
Sbjct: 358 VGMAAIQLARHLGA-----EVYATA---SEDKWQAVELSREHLA-SSRTCDFEQQ---FL 405
Query: 255 EA---------LHAYFPNELLPGSSLRVISEPGRF 280
A L++ E +SLR++ GRF
Sbjct: 406 GATGGRGVDVVLNS-LAGEFAD-ASLRMLPRGGRF 438
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B
2c37_B* 2c38_B* 2c39_B* 3l7z_B
Length = 250
Score = 28.0 bits (63), Expect = 5.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 252 IIKEALHAYFPNELLPGSSLRVISE 276
+I+EAL + EL P +++ V +E
Sbjct: 108 VIREALESAVLVELFPRTAIDVFTE 132
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 27.4 bits (61), Expect = 7.3
Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 190 GVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNK-MRVLDIGGGF 236
G H G A A + E A L RVLD+G G
Sbjct: 25 GENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGI 72
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease,
hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus
fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Length = 258
Score = 27.2 bits (61), Expect = 8.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 252 IIKEALHAYFPNELLPGSSLRVISE 276
+ KEA A EL P S++ + E
Sbjct: 104 VSKEAFEAVIMKELFPRSAIDIFVE 128
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil,
hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP:
b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A*
Length = 482
Score = 27.7 bits (61), Expect = 8.7
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 239 TNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIG 294
N TK F E A+ + G+SLR S P R+F + LY G
Sbjct: 408 ANDGTKQFHEDATFCPQ------AALNGEGTSLRSWSYPTRYFRHYENVLYAASNG 457
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 27.5 bits (61), Expect = 9.1
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 193 FHIGSAATKFAAYRGAIAAAKAVFETAARLGNNK-----MRVLDIGGGF 236
H+G A+ + A+ L + LD+G G+
Sbjct: 45 IHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGY 93
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A
{Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Length = 290
Score = 27.1 bits (60), Expect = 10.0
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 177 LLEAAEASGLSVVGVAFHIG--SAATKFAAYR-GAIAAAKAVFETAARLGNNKMRVLDIG 233
L A+ GL+V+ A+ + R K + + LG L
Sbjct: 52 LKAVADDLGLTVMCCIGLKSEYDFASPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFC 111
Query: 234 GGFSFTNSNTKSFQEAASIIKEALHA 259
+ K + E++
Sbjct: 112 AWPQSPPLDMKDKRPYVDRAIESVRR 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,617,677
Number of extensions: 422959
Number of successful extensions: 1389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1289
Number of HSP's successfully gapped: 57
Length of query: 409
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 313
Effective length of database: 4,021,377
Effective search space: 1258691001
Effective search space used: 1258691001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)