RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015304
(409 letters)
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 240
Score = 142 bits (358), Expect = 1e-40
Identities = 109/248 (43%), Positives = 154/248 (62%), Gaps = 8/248 (3%)
Query: 38 DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGV 97
DLG ++ + + + LP + P YAVKCN A++ LAA+G+ FDCAS++EI+ V LGV
Sbjct: 1 DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGV 60
Query: 98 SPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGA 157
+R+IYANPCK VS IKYAA+ GV + TFDS EL K+ + HPK L++RI DDS A
Sbjct: 61 PAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKA 119
Query: 158 KHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFE 217
L K+G LLE A+ + V+GV+FH+GS T + A++ A+ VF+
Sbjct: 120 VCRLSVKFGATLK--TSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFD 177
Query: 218 TAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEP 277
A +G + M +LDIGGGF + F+E S+I AL YFP++ S +R+I+EP
Sbjct: 178 MATEVGFS-MHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSD----SGVRIIAEP 232
Query: 278 GRFFTYSA 285
GR++ SA
Sbjct: 233 GRYYVASA 240
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase
{Trypanosoma brucei [TaxId: 5691]}
Length = 240
Score = 129 bits (324), Expect = 1e-35
Identities = 102/248 (41%), Positives = 147/248 (59%), Gaps = 8/248 (3%)
Query: 38 DLGVVVTLYNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGV 97
DLG +V + LP + P YAVKCN + +L LAALG+ FDCAS +EI+ V +GV
Sbjct: 1 DLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGV 60
Query: 98 SPDRIIYANPCKPVSHIKYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGA 157
P++IIYANPCK +SHI+YA + GV++ TFD V+EL K+ K HPK +++RI D
Sbjct: 61 PPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLAR 120
Query: 158 KHPLDSKYGVDHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFE 217
++ +LE A+ + V GV+FH+GS +T + + AI+ ++ VF+
Sbjct: 121 CRLSVKFG---AKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFD 177
Query: 218 TAARLGNNKMRVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEP 277
LG N M +LDIGGGF T F+E A +I AL +FP +L L +++EP
Sbjct: 178 MGTELGFN-MHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDL----KLTIVAEP 232
Query: 278 GRFFTYSA 285
GR++ SA
Sbjct: 233 GRYYVASA 240
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine
decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]}
Length = 169
Score = 104 bits (260), Expect = 3e-27
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 29/167 (17%)
Query: 264 ELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMR--------------NYWINDG 309
L S+ E FF AFTL +I K+V ++ Y++NDG
Sbjct: 11 ALCKKISMNTCDEGDPFFV--AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG 68
Query: 310 KYGSFDWVNYDEAIAKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPEL 369
YGSF+ + YD A+ + P + Y S V+GPTCD D++ + LPE+
Sbjct: 69 VYGSFNCILYDHAVVRPLPQR------EPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEM 122
Query: 370 EVTDWLVFSEMGAYTRARGTNFNGYNTAAI-------PTYVVRSNRT 409
+V +WL+F +MGAYT ++FNG+ + I P +VVR ++
Sbjct: 123 QVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 169
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 265
Score = 107 bits (266), Expect = 3e-27
Identities = 44/244 (18%), Positives = 81/244 (33%), Gaps = 19/244 (7%)
Query: 56 IHPHYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIK 115
+ HYA K + ++ G D + E+ L P+RI K VS +
Sbjct: 20 ANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELT 79
Query: 116 YAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAK---------HPLDSKYG 166
A GV DS+ E+ ++ + ++ + G + D K+G
Sbjct: 80 AAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFG 139
Query: 167 VDH-HPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFET----AAR 221
+ + + L +VG+ HIGS + A +
Sbjct: 140 LSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGP 199
Query: 222 LGNNKMRVLDIGGGFS---FTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPG 278
++ +D+GGG + + E A+ + + LP +++ EPG
Sbjct: 200 EKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLPT--PKLVVEPG 257
Query: 279 RFFT 282
R
Sbjct: 258 RAIA 261
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine
decarboxylase (ODC) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 177
Score = 92.1 bits (228), Expect = 1e-22
Identities = 55/186 (29%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 237 SFTNSNTK-SFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGK 295
SFT + K+ L + + F+ AFTL II K
Sbjct: 2 SFTKDEFDCHILDEGFTAKDILDQKINE-------VSSSDDKDAFYV--AFTLAVNIIAK 52
Query: 296 RV--------HGEMRN------YWINDGKYGSFDWVNYDEAIAKCTPLTLASSLTTSKGL 341
+ E + Y++NDG YGSF+ + YD A K K
Sbjct: 53 KTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQK------RPKPD 106
Query: 342 SRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAYTRARGTNFNGYNTAAIPT 401
+ Y+S ++GPTCD D + LPE+ V DW++F MGAYT A + FNG+ I
Sbjct: 107 EKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNI-- 164
Query: 402 YVVRSN 407
Y V S
Sbjct: 165 YYVMSR 170
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 264
Score = 94.1 bits (232), Expect = 1e-22
Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 18/240 (7%)
Query: 59 HYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYANPCKPVSHIKYAA 118
YA K N A+ LA LG D S E+ V +I++ CK I
Sbjct: 30 AYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGI 89
Query: 119 NVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSG---------AKHPLDSKYGVDH 169
+ DS+ EL I + + + + + +K+G+D
Sbjct: 90 EANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDV 149
Query: 170 HPQEIVPL-LEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMR 228
+ A E ++VVGV HIGS T + + G +
Sbjct: 150 ESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIE-IE 208
Query: 229 VLDIGGGF---SFTNSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSA 285
+++GGG + + + ++ A I + Y +P +I EPGR +A
Sbjct: 209 DVNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMP----NLILEPGRSLVATA 264
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA
{Escherichia coli [TaxId: 562]}
Length = 247
Score = 91.3 bits (225), Expect = 9e-22
Identities = 42/237 (17%), Positives = 77/237 (32%), Gaps = 19/237 (8%)
Query: 59 HYAVKCNPEPALLEALAALGSNFDCASRSEIEAVLALGVSP----DRIIYANPCKPVSHI 114
+A K +L + G D S EIE LA G +P D I++ + +
Sbjct: 19 RFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATL 78
Query: 115 KYAANVGVNLTTFDSVEELHKIRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHPQEI 174
+ + + SV+ L ++ + P + +R+ P G ++ H
Sbjct: 79 ERVSEL-QIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWY 137
Query: 175 ---VPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKMRVLD 231
L+ + L +VG+ HIGS + ++ +
Sbjct: 138 TDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQ-----VCGAMVRQVIEFGQDLQAIS 192
Query: 232 IGGGFSFT---NSNTKSFQEAASIIKEALHAYFPNELLPGSSLRVISEPGRFFTYSA 285
GGG S + + A + G +++ EPGRF +
Sbjct: 193 AGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHL---GHPVKLEIEPGRFLVAQS 246
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
LysA {Escherichia coli [TaxId: 562]}
Length = 174
Score = 56.6 bits (136), Expect = 3e-10
Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 21/148 (14%)
Query: 271 LRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDW---VNYDEAIAKCT 327
LR+ +E G + L TQ+ + G R++ + D G D Y
Sbjct: 17 LRLPAEFGC--PVWVYVLITQVRSVKQMGS-RHFVLVDA--GFNDLMRPAMYGSYHHISA 71
Query: 328 PLTLASSLTTSKGLSRTYNSKVFGPTCDAADEV-------FSGHKLPELEVTDWLVFSEM 380
SL + T + V GP C++ D LPE++ D+LV +
Sbjct: 72 LAADGRSLEHAP----TVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDT 127
Query: 381 GAYTRARGTNFNGYNTAAIPTYVVRSNR 408
GAY + +N+N + + +
Sbjct: 128 GAYGASMSSNYNSRPLLPE--VLFDNGQ 153
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase
LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 181
Score = 46.1 bits (109), Expect = 1e-06
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 272 RVISEPGRFFTYSAFTLYTQIIGKRV---HGEMRNYWINDGKYGSFDWV---NYDEAIAK 325
++ E G + TLY K V R Y DG G D + Y A
Sbjct: 32 QLAQEYGTPL-FVIITLYEVGTVKDVDVSATAHRRYVSVDG--GMSDNIRTALYG-AQYD 87
Query: 326 CTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLP-ELEVTDWLVFSEMGAYT 384
++ + +++ G C++ D + +P ++ D + + GAY
Sbjct: 88 VRLVS-------RVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYC 140
Query: 385 RARGTNFNGYNTAAI 399
+ + +N A+
Sbjct: 141 YSLSSRYNMVGRPAV 155
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase
LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 170
Score = 42.3 bits (99), Expect = 2e-05
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 10/136 (7%)
Query: 264 ELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGEMRNYWINDGKYGSFDWVNYDEAI 323
+ G ++E Y L ++ + + + D EA
Sbjct: 14 FFIDGYDAIELAEKFGTPLYVMGYLLGKVHH-IKETPVTKWVMIDAGMNDMMRPAMYEAY 72
Query: 324 AKCTPLTLASSLTTSKGLSRTYNSKVFGPTCDAADEVFSGHKLPELEVTDWLVFSEMGAY 383
+ + + G C+++D +L ++EV D L ++GAY
Sbjct: 73 HHIINCKVKN---------EKEVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAY 123
Query: 384 TRARGTNFNGYNTAAI 399
+ N+N +
Sbjct: 124 GISMANNYNARGRPRM 139
>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 29.8 bits (67), Expect = 0.26
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 348 KVFGPTCDAADEVFSGHKLPELEVTDW--LVFSEMGAYTRARGTNFNGYN 395
K F C+ + + + + + +F G T+A N
Sbjct: 1 KQFTK-CELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVENDESTE 49
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP,
livin) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.2 bits (63), Expect = 0.49
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 128 DSVEELHKIRKWHPKCDLLIRIKPPD 153
D H KW P C L+R K +
Sbjct: 61 DDPWTEHA--KWFPGCQFLLRSKGQE 84
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 27.5 bits (61), Expect = 0.72
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 128 DSVEELHKIRKWHPKCDLLIRIKPPD 153
D H KW P+C+ LIR+K +
Sbjct: 55 DDPWVEHA--KWFPRCEFLIRMKGQE 78
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 27.9 bits (62), Expect = 0.76
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 128 DSVEELHKIRKWHPKCDLLIRIKPPD 153
+ E H KW+P C L+ K +
Sbjct: 65 EDPWEQHA--KWYPGCKYLLEQKGQE 88
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 105
Score = 27.9 bits (62), Expect = 0.78
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 128 DSVEELHKIRKWHPKCDLLIRIKPPD 153
D E H W +C + +K
Sbjct: 64 DEPWEQHA--LWLSQCRFVKLMKGQL 87
>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB)
{Escherichia coli [TaxId: 562]}
Length = 207
Score = 28.9 bits (64), Expect = 0.89
Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 13/157 (8%)
Query: 115 KYAANVGVNLT--TFDSVEELHK-IRKWHPKCDLLIRIKPPDDSGAKHPLDSKYGVDHHP 171
+ G++LT + + + KW+ +L ++ P++ +H LDS +
Sbjct: 7 LLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNL-TSVRDPNEMLVRHILDSIVVAPYLQ 65
Query: 172 QEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLGNNKM---- 227
E + +G + G+ I F + + + L +
Sbjct: 66 GERFIDVG----TGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ 121
Query: 228 -RVLDIGGGFSFTNSNTKSFQEAASIIKEALHAYFPN 263
RV + F +++F ++ H
Sbjct: 122 SRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQ 158
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 27.2 bits (60), Expect = 1.1
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 18 FVRSTILKRQEFDEVPFYILDLGVVVTLYNQMISKLP---MIHPHYAVKC 64
+ R+ +L E + Y +D G + + L + P A++C
Sbjct: 42 WYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIEC 91
>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 28.1 bits (61), Expect = 1.3
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 245 SFQEAASIIKEALHAYFP----NELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGE 300
SF++AA+ + L Y+ E+ P + G +
Sbjct: 2 SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG 61
Query: 301 MRNYWINDGKYGSFDWVNYDE 321
+ K G++ +NY E
Sbjct: 62 TAQKAQSALKAGAWQVINYRE 82
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 28.1 bits (61), Expect = 1.7
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 164 KYGV----DHHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAA 212
K+G+ + ++IV L++ AE G + H + IA
Sbjct: 2 KFGIEFVPNEPIEKIVKLVKLAEDVGFEYAWITDHYNNKNVYETL--ALIAEG 52
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 28.2 bits (61), Expect = 2.1
Identities = 11/55 (20%), Positives = 17/55 (30%)
Query: 169 HHPQEIVPLLEAAEASGLSVVGVAFHIGSAATKFAAYRGAIAAAKAVFETAARLG 223
+ P + + AE G V V H A A A A + ++
Sbjct: 14 YRPMDALEQAIRAEKVGFDSVWVDDHFHPWYHDNAQSAQAWAWMGAALQATKKVF 68
>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 163
Score = 27.0 bits (59), Expect = 3.3
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 125 TTFDSVE-ELHKIRKWHPKCDLLIRIKPPDDSGAK 158
F+ +L +IR H + K D +
Sbjct: 34 VYFEVPRPKLLRIRGVHNLKKYYLTFKEILDENNE 68
>d1wd3a2 b.42.8.1 (A:338-499) Alpha-L-arabinofuranosidase B (AbfB),
C-terminal domain {Aspergillus kawachii [TaxId: 40384]}
Length = 162
Score = 26.4 bits (58), Expect = 4.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 240 NSNTKSFQEAAS-IIKEALHAYFPNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGK 295
N TK F E A+ + AL+ G+SLR S P R+F + LY G
Sbjct: 89 NDGTKQFHEDATFCPQAALNGE-------GTSLRSWSYPTRYFRHYENVLYAASNGG 138
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 190
Score = 26.7 bits (58), Expect = 4.4
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1 MGGQRVTTVVTKEELTEFVRSTILKRQEFDEV 32
MG + T+ ++K++LT +ST R+E +
Sbjct: 1 MGAK--TSKLSKDDLTCLKQSTYFDRREIQQW 30
>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus),
ptp-sl/br7 [TaxId: 10090]}
Length = 297
Score = 26.7 bits (58), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 4 QRVTTVVTKEELTEFVRSTILKRQEFDEVP 33
Q + V+T+ +L + V S+ L + EF E+P
Sbjct: 13 QSASRVLTRSQLRDVVASSHLLQSEFMEIP 42
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 25.7 bits (56), Expect = 7.5
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 128 DSVEELHKIRKWHPKCDLLIRIKPPDD 154
D E HK K C L K ++
Sbjct: 67 DDPIEEHK--KHSSGCAFLSVKKQFEE 91
>d1gbsa_ d.2.1.5 (A:) Lysozyme {Australian black swan (Cygnus
atratus) [TaxId: 8868]}
Length = 185
Score = 25.9 bits (56), Expect = 7.9
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 11/83 (13%)
Query: 46 YNQMISKLPMIHPHYAVKCNPEPALLEALAALGSNFDCASRS----EIEAVLALGVSPDR 101
Y +I K K EPA++ + + S+ ++ + V
Sbjct: 48 YKTIIKK-------VGEKLCVEPAVIAGIISRESHAGKVLKNGWGDRGNGFGLMQVDKRS 100
Query: 102 IIYANPCKPVSHIKYAANVGVNL 124
HI + +
Sbjct: 101 HKPQGTWNGEVHITQGTTILTDF 123
>d3eeqa1 c.151.1.1 (A:215-335) Cobalamin biosynthesis protein G,
CbiG {Sulfolobus solfataricus [TaxId: 2287]}
Length = 121
Score = 25.2 bits (55), Expect = 8.2
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 67 EPALLEALAALGSNFDCASRSEIEAVLALGVSPDRIIYA 105
+ + F + EI + ++P
Sbjct: 42 REEVKKIADEFNVRFRLVNEEEINNFMNPCLTPPSKTLI 80
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast
(Candida tropicalis) [TaxId: 5482]}
Length = 189
Score = 25.7 bits (55), Expect = 10.0
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 245 SFQEAASIIKEALHAYF----PNELLPGSSLRVISEPGRFFTYSAFTLYTQIIGKRVHGE 300
+ + A+I L AY +L PG + + + +++
Sbjct: 2 TINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTS-AVGKYASQIGKLLNFNSISV 60
Query: 301 MRNYWINDGKYGSFDWVNYDEAI 323
+R+ D S + + I
Sbjct: 61 IRDRPNLDEVVASLKELGATQVI 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,570,237
Number of extensions: 75322
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 31
Length of query: 409
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,213,086
Effective search space: 390613692
Effective search space used: 390613692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)