Query 015305
Match_columns 409
No_of_seqs 239 out of 1724
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00466 actin-like protein; P 100.0 1.9E-61 4E-66 488.1 27.2 279 112-409 4-324 (380)
2 PTZ00452 actin; Provisional 100.0 4.6E-61 1E-65 484.6 26.3 270 126-409 6-319 (375)
3 PTZ00281 actin; Provisional 100.0 2.5E-60 5.4E-65 479.8 25.5 275 119-409 2-320 (376)
4 KOG0676 Actin and related prot 100.0 1.1E-60 2.4E-65 471.6 20.1 267 126-408 8-315 (372)
5 KOG0677 Actin-related protein 100.0 2.2E-60 4.9E-65 438.0 20.5 271 125-409 4-320 (389)
6 PTZ00004 actin-2; Provisional 100.0 9.9E-58 2.1E-62 461.2 26.4 270 126-409 7-322 (378)
7 KOG0679 Actin-related protein 100.0 4.8E-56 1E-60 428.6 22.7 277 117-409 5-367 (426)
8 PTZ00280 Actin-related protein 100.0 6.5E-55 1.4E-59 445.7 26.4 270 126-409 5-338 (414)
9 PF00022 Actin: Actin; InterP 100.0 1.2E-53 2.6E-58 432.9 22.8 269 126-408 5-335 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 5.5E-52 1.2E-56 418.4 24.3 270 126-409 2-317 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.2E-49 2.5E-54 401.3 24.9 269 127-409 1-315 (371)
12 COG5277 Actin and related prot 100.0 3.6E-46 7.8E-51 380.1 23.3 269 126-408 7-387 (444)
13 KOG0680 Actin-related protein 100.0 4.9E-45 1.1E-49 345.0 17.9 270 125-408 3-342 (400)
14 KOG0678 Actin-related protein 100.0 5.4E-39 1.2E-43 304.4 14.0 268 127-408 6-339 (415)
15 KOG0681 Actin-related protein 100.0 4.1E-37 8.9E-42 307.4 19.6 158 126-294 24-219 (645)
16 PRK13930 rod shape-determining 100.0 2E-29 4.3E-34 250.7 18.2 253 128-408 11-305 (335)
17 PRK13927 rod shape-determining 100.0 4.3E-28 9.3E-33 241.1 17.9 252 127-408 7-301 (334)
18 PRK13929 rod-share determining 99.9 4.2E-26 9.2E-31 227.2 19.9 252 127-408 6-303 (335)
19 TIGR00904 mreB cell shape dete 99.9 2.4E-25 5.2E-30 221.5 19.2 253 128-408 5-304 (333)
20 PRK13928 rod shape-determining 99.9 4.6E-23 9.9E-28 205.4 18.2 254 128-408 6-300 (336)
21 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 2.8E-22 6E-27 197.6 15.3 255 127-408 3-298 (326)
22 KOG0797 Actin-related protein 99.8 2.7E-20 5.8E-25 186.0 15.1 137 167-313 205-353 (618)
23 COG1077 MreB Actin-like ATPase 99.7 4.6E-17 1E-21 156.5 15.2 256 127-408 8-308 (342)
24 TIGR02529 EutJ ethanolamine ut 99.5 2E-12 4.3E-17 123.1 17.4 210 130-408 2-219 (239)
25 PRK15080 ethanolamine utilizat 99.4 2.7E-11 5.8E-16 117.2 18.6 213 126-408 25-246 (267)
26 PF12937 F-box-like: F-box-lik 99.2 1.6E-11 3.5E-16 86.9 3.4 46 39-84 2-47 (47)
27 PTZ00400 DnaK-type molecular c 99.1 2.1E-09 4.5E-14 116.5 19.8 187 186-407 175-391 (663)
28 CHL00094 dnaK heat shock prote 99.1 4.4E-09 9.5E-14 113.3 21.2 186 186-407 136-352 (621)
29 PRK00290 dnaK molecular chaper 99.1 4.4E-09 9.6E-14 113.4 20.6 186 186-407 134-350 (627)
30 PTZ00009 heat shock 70 kDa pro 99.1 6.4E-09 1.4E-13 112.6 21.2 187 186-407 141-356 (653)
31 PLN03184 chloroplast Hsp70; Pr 99.1 5.1E-09 1.1E-13 113.6 20.1 186 186-407 173-389 (673)
32 TIGR02350 prok_dnaK chaperone 99.1 5.1E-09 1.1E-13 112.3 20.0 186 186-407 131-348 (595)
33 TIGR01991 HscA Fe-S protein as 99.1 6.4E-09 1.4E-13 111.5 20.6 187 186-407 130-336 (599)
34 TIGR01174 ftsA cell division p 99.1 9.6E-10 2.1E-14 111.2 13.6 173 208-408 157-339 (371)
35 PRK13411 molecular chaperone D 99.1 4.8E-09 1E-13 113.5 19.2 186 186-407 134-351 (653)
36 PTZ00186 heat shock 70 kDa pre 99.1 1.2E-08 2.5E-13 110.3 21.6 187 186-407 161-377 (657)
37 PRK01433 hscA chaperone protei 99.1 1.4E-08 3E-13 108.7 20.5 179 186-407 142-332 (595)
38 PRK13410 molecular chaperone D 99.0 1.9E-08 4E-13 109.1 21.6 185 187-407 137-352 (668)
39 PRK05183 hscA chaperone protei 99.0 1.9E-08 4.2E-13 108.2 20.2 185 186-407 150-352 (616)
40 PRK09472 ftsA cell division pr 98.9 9.3E-09 2E-13 105.8 12.9 165 221-408 178-353 (420)
41 PF00012 HSP70: Hsp70 protein; 98.9 3.5E-08 7.6E-13 105.7 16.0 188 187-407 137-352 (602)
42 PF00646 F-box: F-box domain; 98.9 1.3E-09 2.9E-14 77.1 3.5 46 38-83 3-48 (48)
43 PRK11678 putative chaperone; P 98.8 1.7E-07 3.7E-12 97.1 19.0 93 186-285 150-260 (450)
44 smart00256 FBOX A Receptor for 98.8 2.4E-09 5.1E-14 72.8 2.8 40 41-80 1-40 (41)
45 COG0849 ftsA Cell division ATP 98.7 9.8E-08 2.1E-12 97.2 12.0 166 212-404 168-341 (418)
46 TIGR01175 pilM type IV pilus a 98.5 2E-06 4.3E-11 86.0 13.0 154 208-408 142-307 (348)
47 COG0443 DnaK Molecular chapero 98.4 1.9E-05 4.1E-10 84.4 18.7 96 185-291 120-223 (579)
48 TIGR03739 PRTRC_D PRTRC system 98.2 1.1E-05 2.4E-10 80.1 11.2 82 221-303 137-229 (320)
49 PF11104 PilM_2: Type IV pilus 98.1 3.5E-06 7.7E-11 84.3 6.5 155 207-408 134-299 (340)
50 PRK13917 plasmid segregation p 98.1 1.3E-05 2.9E-10 80.3 9.8 69 222-291 152-233 (344)
51 KOG0104 Molecular chaperones G 97.9 0.00035 7.6E-09 74.4 15.9 95 187-291 160-276 (902)
52 COG4820 EutJ Ethanolamine util 97.8 5.7E-05 1.2E-09 68.9 7.4 133 221-408 119-251 (277)
53 KOG2997 F-box protein FBX9 [Ge 97.3 0.00014 3.1E-09 70.5 3.4 47 37-83 106-157 (366)
54 PRK10719 eutA reactivating fac 97.1 0.002 4.3E-08 66.4 9.4 157 126-295 7-207 (475)
55 PF06406 StbA: StbA protein; 97.1 0.0019 4.2E-08 64.1 8.5 71 221-291 138-213 (318)
56 KOG0101 Molecular chaperones H 97.0 0.01 2.2E-07 63.3 12.7 184 186-405 144-356 (620)
57 COG4972 PilM Tfp pilus assembl 96.6 0.0095 2E-07 58.6 8.9 116 244-407 195-311 (354)
58 PF06277 EutA: Ethanolamine ut 96.4 0.017 3.7E-07 59.7 9.1 160 126-295 4-204 (473)
59 KOG0281 Beta-TrCP (transducin 96.2 0.004 8.7E-08 61.2 3.5 47 38-84 75-125 (499)
60 KOG0100 Molecular chaperones G 96.1 0.039 8.3E-07 55.6 9.8 68 221-289 198-274 (663)
61 PLN03215 ascorbic acid mannose 95.9 0.0054 1.2E-07 61.9 3.0 38 37-74 3-41 (373)
62 TIGR03706 exo_poly_only exopol 95.9 0.066 1.4E-06 52.7 10.5 41 242-285 125-165 (300)
63 KOG2120 SCF ubiquitin ligase, 95.8 0.0061 1.3E-07 59.4 2.5 46 36-81 96-141 (419)
64 TIGR00241 CoA_E_activ CoA-subs 95.7 0.44 9.5E-06 45.4 15.1 46 243-289 92-138 (248)
65 TIGR03123 one_C_unchar_1 proba 95.5 0.14 3.1E-06 50.7 11.0 125 130-267 3-153 (318)
66 PRK11031 guanosine pentaphosph 95.4 0.15 3.3E-06 53.8 11.8 39 242-283 132-170 (496)
67 TIGR03286 methan_mark_15 putat 95.4 0.033 7.1E-07 56.7 6.5 133 126-286 145-286 (404)
68 TIGR03192 benz_CoA_bzdQ benzoy 94.9 0.24 5.2E-06 48.5 10.6 112 126-266 33-150 (293)
69 COG1548 Predicted transcriptio 94.7 0.14 3.1E-06 48.9 8.1 123 126-264 4-152 (330)
70 KOG0103 Molecular chaperones H 94.5 0.79 1.7E-05 49.3 13.8 95 185-291 137-247 (727)
71 PRK10854 exopolyphosphatase; P 94.4 0.38 8.3E-06 51.0 11.5 39 242-283 137-175 (513)
72 KOG0274 Cdc4 and related F-box 94.3 0.016 3.4E-07 61.6 0.8 49 36-84 106-154 (537)
73 COG0248 GppA Exopolyphosphatas 93.9 0.29 6.4E-06 51.5 9.4 146 126-285 4-169 (492)
74 TIGR02261 benz_CoA_red_D benzo 93.2 1.2 2.7E-05 42.9 11.5 23 385-407 213-235 (262)
75 KOG3926 F-box proteins [Amino 93.0 0.15 3.4E-06 48.8 5.0 49 37-85 201-250 (332)
76 KOG0102 Molecular chaperones m 91.5 1.2 2.5E-05 46.9 9.4 95 187-291 162-263 (640)
77 PF14450 FtsA: Cell division p 90.9 1.2 2.7E-05 37.5 7.8 59 245-312 2-71 (120)
78 COG1924 Activator of 2-hydroxy 89.5 4.4 9.5E-05 41.0 11.3 119 125-266 135-253 (396)
79 PF02541 Ppx-GppA: Ppx/GppA ph 89.4 0.9 2E-05 44.1 6.5 43 240-285 110-152 (285)
80 KOG4341 F-box protein containi 88.9 0.25 5.4E-06 50.4 2.1 41 40-80 74-114 (483)
81 PF06881 Elongin_A: RNA polyme 88.7 0.55 1.2E-05 39.1 3.8 50 37-88 3-52 (109)
82 PF01968 Hydantoinase_A: Hydan 87.3 0.71 1.5E-05 45.2 4.2 45 223-267 53-102 (290)
83 PRK13321 pantothenate kinase; 82.8 16 0.00035 35.0 11.2 18 128-145 3-20 (256)
84 PF13013 F-box-like_2: F-box-l 81.9 1.9 4.2E-05 36.0 3.8 30 37-66 21-50 (109)
85 PF08841 DDR: Diol dehydratase 81.5 9.9 0.00021 37.1 8.9 86 214-307 100-191 (332)
86 PF03309 Pan_kinase: Type III 80.8 23 0.0005 32.6 11.2 18 128-145 2-19 (206)
87 COG4819 EutA Ethanolamine util 80.6 6.5 0.00014 39.2 7.5 142 126-280 6-180 (473)
88 PRK13324 pantothenate kinase; 80.3 43 0.00092 32.3 13.1 18 128-145 3-20 (258)
89 TIGR00744 ROK_glcA_fam ROK fam 76.4 50 0.0011 32.2 12.7 45 221-267 97-148 (318)
90 PRK13318 pantothenate kinase; 75.3 54 0.0012 31.3 12.3 17 128-144 3-19 (258)
91 TIGR00671 baf pantothenate kin 74.0 39 0.00085 32.1 10.8 18 128-145 2-19 (243)
92 COG1521 Pantothenate kinase ty 68.1 25 0.00055 33.8 8.0 19 128-146 3-21 (251)
93 PRK13320 pantothenate kinase; 63.9 99 0.0021 29.4 11.2 19 127-145 4-22 (244)
94 PF08735 DUF1786: Putative pyr 56.3 1.1E+02 0.0023 29.6 9.8 44 221-265 140-190 (254)
95 PF09372 PRANC: PRANC domain; 55.9 9.4 0.0002 30.8 2.3 26 36-61 70-95 (97)
96 KOG4408 Putative Mg2+ and Co2+ 55.7 1.9 4.2E-05 42.7 -2.0 50 37-86 7-56 (386)
97 PF00286 Flexi_CP: Viral coat 55.1 7.4 0.00016 34.0 1.7 52 41-102 60-113 (140)
98 PRK13326 pantothenate kinase; 48.7 2.3E+02 0.005 27.3 11.1 19 127-145 8-26 (262)
99 PF13941 MutL: MutL protein 48.2 41 0.00089 35.2 6.1 81 184-266 177-272 (457)
100 TIGR01319 glmL_fam conserved h 47.1 33 0.00072 35.9 5.2 79 185-265 174-272 (463)
101 COG0145 HyuA N-methylhydantoin 43.7 25 0.00054 38.7 3.9 46 222-267 252-303 (674)
102 KOG2708 Predicted metalloprote 39.7 1.3E+02 0.0029 28.7 7.4 52 239-292 121-172 (336)
103 PF01869 BcrAD_BadFG: BadF/Bad 35.5 3.9E+02 0.0084 25.3 11.3 123 129-267 2-131 (271)
104 PRK13331 pantothenate kinase; 32.3 4.6E+02 0.01 25.1 11.4 20 126-145 8-27 (251)
105 TIGR02259 benz_CoA_red_A benzo 28.1 42 0.00092 34.5 2.4 27 382-408 380-406 (432)
106 TIGR02707 butyr_kinase butyrat 27.0 6.6E+02 0.014 25.3 13.4 24 243-267 175-198 (351)
107 PF03702 UPF0075: Uncharacteri 26.0 36 0.00078 34.6 1.4 24 385-408 286-309 (364)
108 PF07318 DUF1464: Protein of u 25.4 1.1E+02 0.0023 30.9 4.6 29 239-267 151-179 (343)
109 PRK13310 N-acetyl-D-glucosamin 22.1 7.1E+02 0.015 23.9 13.2 45 221-267 96-147 (303)
110 PRK13317 pantothenate kinase; 21.0 65 0.0014 31.4 2.1 48 359-408 200-248 (277)
No 1
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.9e-61 Score=488.08 Aligned_cols=279 Identities=23% Similarity=0.475 Sum_probs=250.4
Q ss_pred CccccccCCCCCCCceEEEeCCCCeEEEEEeCCCCCCcccccccc-----------------cCC----------ccchH
Q 015305 112 LSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM 164 (409)
Q Consensus 112 ~s~~~~y~~~~~~~~~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------------~G~----------~~~Pi 164 (409)
.+||+.+.. .+||||+||+++||||||++.|+.++|++++ +|+ +.+|+
T Consensus 4 ~~~~~~~~~-----~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi 78 (380)
T PTZ00466 4 EYAKQLYSN-----QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPI 78 (380)
T ss_pred chHHHhccC-----CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccc
Confidence 467777754 5799999999999999999999999998652 232 35687
Q ss_pred -------HHHHHHHHHHHHhhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHH
Q 015305 165 -------YSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLAL 236 (409)
Q Consensus 165 -------~~~le~~~~~~~~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal 236 (409)
||.++.+|+++|++|+++|+++||+++|+++++ +..|+ .+.|+||| |++|++++.++++||+
T Consensus 79 ~~G~v~dwd~~e~iw~~~f~~l~v~~~~~pvllte~~~~~------~~~re----~~~e~lFE~~~~p~~~~~~~~~lsl 148 (380)
T PTZ00466 79 NHGIIENWNDMENIWIHVYNSMKINSEEHPVLLTEAPLNP------QKNKE----KIAEVFFETFNVPALFISIQAILSL 148 (380)
T ss_pred cCCeECCHHHHHHHHHHHHhhcccCCccCeEEEecCcccc------HHHHH----HHHHHHhccCCCCeEEEecchHHHH
Confidence 899999999999999999999999999998764 55665 46777888 9999999999999999
Q ss_pred HHcCCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhccccc
Q 015305 237 YAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAA 313 (409)
Q Consensus 237 ~a~G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~ 313 (409)
||+|++||+|||+|++.|+|+||+||+++.+ ++.++++||++++++|+++|++++..+. ..+.+++|||++|||+.
T Consensus 149 ~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~ 227 (380)
T PTZ00466 149 YSCGKTNGTVLDCGDGVCHCVSIYEGYSITN-TITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSF 227 (380)
T ss_pred HhcCCceEEEEeCCCCceEEEEEECCEEeec-ceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecC
Confidence 9999999999999999999999999999998 8999999999999999999998876554 25789999999999999
Q ss_pred chHHhhhcc----ccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEE
Q 015305 314 DYKAELSKD----TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVIL 389 (409)
Q Consensus 314 d~~~e~~~~----~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvL 389 (409)
|+.+++++. ....|+||||+.+.++.|||.+||+||+|+++|.+..||+++|.++|.+|++ |+ |++|++||||
T Consensus 228 d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~-d~--r~~L~~nIvL 304 (380)
T PTZ00466 228 NMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADM-DL--RRTLYSHIVL 304 (380)
T ss_pred ChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCCh-hh--HHHHhhcEEE
Confidence 988765421 2367999999999999999999999999999999999999999999999998 98 8999999999
Q ss_pred eccCCCCccHHHHHhhhhcC
Q 015305 390 TGGSACLPGLAGIRNSFNKQ 409 (409)
Q Consensus 390 tGG~S~ipGf~eRL~~E~k~ 409 (409)
+||+|++|||.+||++|+++
T Consensus 305 ~GG~Sl~~Gf~~RL~~EL~~ 324 (380)
T PTZ00466 305 SGGTTMFHGFGDRLLNEIRK 324 (380)
T ss_pred eCCccccCCHHHHHHHHHHH
Confidence 99999999999999999974
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=4.6e-61 Score=484.61 Aligned_cols=270 Identities=26% Similarity=0.541 Sum_probs=244.2
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc-----------------cCC----------ccchH-------HHHHHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLRHF 171 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------------~G~----------~~~Pi-------~~~le~~ 171 (409)
++||||+||+++|+||||++.|+.++|++++ +|+ +.+|+ ||.++.+
T Consensus 6 ~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~i 85 (375)
T PTZ00452 6 PAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEII 85 (375)
T ss_pred CEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHHH
Confidence 6899999999999999999999999988652 232 35677 7899999
Q ss_pred HHHHH-hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEEEEe
Q 015305 172 FATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNI 249 (409)
Q Consensus 172 ~~~~~-~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglVVDi 249 (409)
|+++| +.|+++|+++||+++|+++++ +..|++ +.|+||| |++|++++.++++|++||+|++||+|||+
T Consensus 86 w~~~f~~~l~v~p~~~pvlitE~~~~~------~~~Re~----l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDi 155 (375)
T PTZ00452 86 WHHAFYNELCMSPEDQPVFMTDAPMNS------KFNRER----MTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDS 155 (375)
T ss_pred HHHHHHhhcCCCcccCceeeecCCCCC------HHHHHH----HHHHHhhccCCceEEEechHHHHHHHCCCceeeeecC
Confidence 99876 679999999999999998764 666655 6677777 99999999999999999999999999999
Q ss_pred CCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCc---HHHHHHHHHhhcccccchHHhhhcc----
Q 015305 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS---LYTVRTLKEKLCYVAADYKAELSKD---- 322 (409)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~---~~~ve~iKe~~c~v~~d~~~e~~~~---- 322 (409)
|++.|+|+||+||+++.+ ++.++++||+++|++|.++|+.+++.+.+ .+.+++|||++|||+.|+++++...
T Consensus 156 G~~~t~v~PV~dG~~l~~-~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~ 234 (375)
T PTZ00452 156 GEGVTHCVPVFEGHQIPQ-AITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESN 234 (375)
T ss_pred CCCcceEEEEECCEEecc-ceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccC
Confidence 999999999999999998 99999999999999999999988877653 5689999999999999988775421
Q ss_pred -ccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHH
Q 015305 323 -TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAG 401 (409)
Q Consensus 323 -~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~e 401 (409)
....|+||||+.+.+++|||.+||+||+|+++|.+..||+++|.++|.+|++ |+ |++|++||||+||+|++|||.+
T Consensus 235 ~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~-d~--r~~L~~nIvL~GG~Sl~~Gf~~ 311 (375)
T PTZ00452 235 SQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDL-DL--RQELCRNIVLSGGTTLFPGIAN 311 (375)
T ss_pred CcCceEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCH-hH--HHHhhccEEEecccccccCHHH
Confidence 2457999999999999999999999999999999999999999999999999 98 8999999999999999999999
Q ss_pred HHhhhhcC
Q 015305 402 IRNSFNKQ 409 (409)
Q Consensus 402 RL~~E~k~ 409 (409)
||++||++
T Consensus 312 RL~~El~~ 319 (375)
T PTZ00452 312 RLSNELTN 319 (375)
T ss_pred HHHHHHHH
Confidence 99999975
No 3
>PTZ00281 actin; Provisional
Probab=100.00 E-value=2.5e-60 Score=479.80 Aligned_cols=275 Identities=28% Similarity=0.546 Sum_probs=246.3
Q ss_pred CCCCCCCceEEEeCCCCeEEEEEeCCCCCCcccccccc-----------------cCC----------ccchH-------
Q 015305 119 GQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM------- 164 (409)
Q Consensus 119 ~~~~~~~~~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------------~G~----------~~~Pi------- 164 (409)
+++++ ++||||+||+++|+||||++.|+.++|++++ +|+ +.+|+
T Consensus 2 ~~~~~--~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d 79 (376)
T PTZ00281 2 DGEDV--QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79 (376)
T ss_pred CCCcC--CeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcC
Confidence 45665 7899999999999999999999999998652 232 24576
Q ss_pred HHHHHHHHHHHH-hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCc
Q 015305 165 YSRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRT 242 (409)
Q Consensus 165 ~~~le~~~~~~~-~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~ 242 (409)
|+.++++|+++| +.|+++|+++||+++||++++ +..| |.+.|+||| |++|++++.++++|++||+|++
T Consensus 80 wd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~------~~~r----e~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~ 149 (376)
T PTZ00281 80 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP------KANR----EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149 (376)
T ss_pred HHHHHHHHHHHHHhhccCCCccCeEEEecCCCCc------HHHH----HHHHHHHhcccCCceeEeeccHHHHHHhcCCc
Confidence 789999999876 679999999999999998864 5555 457788888 9999999999999999999999
Q ss_pred ceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhh
Q 015305 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAEL 319 (409)
Q Consensus 243 sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~ 319 (409)
||+|||+|++.|+|+||+||+++.+ ++.++++||++++++|+++|..++..+. +.+++++|||++|||+.|++.++
T Consensus 150 tglVVDiG~~~t~v~PV~dG~~~~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~ 228 (376)
T PTZ00281 150 TGIVMDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEM 228 (376)
T ss_pred eEEEEECCCceEEEEEEEecccchh-heeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHH
Confidence 9999999999999999999999998 9999999999999999999999887664 35789999999999999987765
Q ss_pred hcc-----ccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCC
Q 015305 320 SKD-----TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (409)
Q Consensus 320 ~~~-----~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (409)
+.. ....|+||||+.+.+++|||.+||+||+|+..|.+..||+++|.++|.+||+ |+ |++|++||||+||+|
T Consensus 229 ~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~-d~--r~~L~~nIvl~GG~s 305 (376)
T PTZ00281 229 QTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDV-DI--RKDLYGNVVLSGGTT 305 (376)
T ss_pred HhhhcCcccceeEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCCh-hH--HHHHHhhccccCccc
Confidence 432 2457999999999999999999999999999999999999999999999999 98 899999999999999
Q ss_pred CCccHHHHHhhhhcC
Q 015305 395 CLPGLAGIRNSFNKQ 409 (409)
Q Consensus 395 ~ipGf~eRL~~E~k~ 409 (409)
+||||.+||++||++
T Consensus 306 ~~~Gf~~RL~~El~~ 320 (376)
T PTZ00281 306 MFPGIADRMNKELTA 320 (376)
T ss_pred cCcCHHHHHHHHHHH
Confidence 999999999999975
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-60 Score=471.61 Aligned_cols=267 Identities=31% Similarity=0.596 Sum_probs=241.4
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCccccccccc-----------------CC-------ccchH-------HHHHHHHHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-----------------GN-------IESPM-------YSRLRHFFAT 174 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~~-----------------G~-------~~~Pi-------~~~le~~~~~ 174 (409)
.+||||+||++||+||||++.|+.++|++++. |+ +.+|+ |+.++.+|++
T Consensus 8 ~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~~l~~Pie~Giv~~wd~me~iw~~ 87 (372)
T KOG0676|consen 8 QAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKRTLKYPIERGIVTDWDDMEKIWHH 87 (372)
T ss_pred ceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccccccCccccccccchHHHHHHHHH
Confidence 68999999999999999999999999987631 21 34677 7899999988
Q ss_pred HH-hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEEEEeCCc
Q 015305 175 IY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQ 252 (409)
Q Consensus 175 ~~-~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglVVDiG~~ 252 (409)
+| +.|+++|++|||+++|++++ |+++||++ .|+||| ||||++++..++++ |++|++||+|||+|++
T Consensus 88 if~~~L~~~Pee~pvllte~pl~------p~~nREk~----tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~g 155 (372)
T KOG0676|consen 88 LFYSELLVAPEEHPVLLTEPPLN------PKANREKL----TQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDG 155 (372)
T ss_pred HHHHhhccCcccCceEeecCCCC------chHhHHHH----HHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCC
Confidence 76 67999999999999999886 48888764 556666 99999999887777 9999999999999999
Q ss_pred eeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhhhcc-----cc
Q 015305 253 VTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD-----TQ 324 (409)
Q Consensus 253 ~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~~~~-----~~ 324 (409)
.|+++||+||+++++ ++.++++||+++|++|+..|.++++++. ..+++++|||++|||+.|+++++... -.
T Consensus 156 vt~~vPI~eG~~lp~-ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~ 234 (372)
T KOG0676|consen 156 VTHVVPIYEGYALPH-AILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLE 234 (372)
T ss_pred ceeeeecccccccch-hhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccc
Confidence 999999999999999 8999999999999999999999887765 36899999999999999999887641 23
Q ss_pred ceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHh
Q 015305 325 ASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRN 404 (409)
Q Consensus 325 ~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~ 404 (409)
.+|+||||+.+.+++|||.+||+||+|+..|.+..||++++.++|.+|++ |+ |++||+||||+||++++|||.+||+
T Consensus 235 ~~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~-dl--rk~L~~nivLsGGtT~~pGl~~Rl~ 311 (372)
T KOG0676|consen 235 SSYELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDI-DL--RKDLYENIVLSGGTTMFPGLADRLQ 311 (372)
T ss_pred ccccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCCh-hH--hHHHHhheEEeCCcccchhHHHHHH
Confidence 56999999999999999999999999999999999999999999999998 99 8999999999999999999999999
Q ss_pred hhhc
Q 015305 405 SFNK 408 (409)
Q Consensus 405 ~E~k 408 (409)
+|+.
T Consensus 312 kEl~ 315 (372)
T KOG0676|consen 312 KELQ 315 (372)
T ss_pred HHHh
Confidence 9985
No 5
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=2.2e-60 Score=438.04 Aligned_cols=271 Identities=26% Similarity=0.474 Sum_probs=248.2
Q ss_pred CceEEEeCCCCeEEEEEeCCCCCCcccccccc-------------------cCC----------ccchH-------HHHH
Q 015305 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------FGN----------IESPM-------YSRL 168 (409)
Q Consensus 125 ~~~VVID~GS~~iKaGfage~~P~~~~~t~~~-------------------~G~----------~~~Pi-------~~~l 168 (409)
.++||.|+|++++|+||||++.|.+++|++++ +|+ +.+|| |+.+
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM 83 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDM 83 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHH
Confidence 37899999999999999999999999998763 232 46787 7899
Q ss_pred HHHHHHH-HhhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEE
Q 015305 169 RHFFATI-YSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIV 246 (409)
Q Consensus 169 e~~~~~~-~~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglV 246 (409)
+++|++. +++|+++|.+..++++|||+|| ..+|+| |+|+||| +++.++|+.-|+++++||.|..||+|
T Consensus 84 ~h~WDytF~ekl~idp~~~KiLLTePPmNP------~kNREK----m~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvV 153 (389)
T KOG0677|consen 84 EHVWDYTFGEKLKIDPTNCKILLTEPPMNP------TKNREK----MIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVV 153 (389)
T ss_pred HHHHHhhhhhhccCCCccCeEEeeCCCCCc------cccHHH----HHHHHHHHcCCCeEEehHHHHHHHHHhcccceEE
Confidence 9999865 5889999999999999999876 567765 6777888 99999999999999999999999999
Q ss_pred EEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhhhcc-
Q 015305 247 VNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD- 322 (409)
Q Consensus 247 VDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~~~~- 322 (409)
||.|.+.|+|+|||+|+.+++ -..|++++|+++|.||.++|..+|+.|+ +++++|+|||++||++.|++.+.+-.
T Consensus 154 vDSGDGVTHi~PVye~~~l~H-LtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLal 232 (389)
T KOG0677|consen 154 VDSGDGVTHIVPVYEGFVLPH-LTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLAL 232 (389)
T ss_pred EecCCCeeEEeeeecceehhh-hhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhh
Confidence 999999999999999999998 7899999999999999999999999886 47899999999999999987764321
Q ss_pred ----ccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCcc
Q 015305 323 ----TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (409)
Q Consensus 323 ----~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG 398 (409)
-..+|+||||..|.+|.|||.+||.||+|.+++.+..|+.+++.+||+..++ |+ |.++|++|||+||+++.||
T Consensus 233 ETTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDi-D~--R~~lYkhIVLSGGstMYPG 309 (389)
T KOG0677|consen 233 ETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADI-DI--RSELYKHIVLSGGSTMYPG 309 (389)
T ss_pred hheeeeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhcc-ch--HHHHHhHeeecCCcccCCC
Confidence 2468999999999999999999999999999999999999999999999998 88 9999999999999999999
Q ss_pred HHHHHhhhhcC
Q 015305 399 LAGIRNSFNKQ 409 (409)
Q Consensus 399 f~eRL~~E~k~ 409 (409)
+..||++|+||
T Consensus 310 LPSRLEkElkq 320 (389)
T KOG0677|consen 310 LPSRLEKELKQ 320 (389)
T ss_pred CcHHHHHHHHH
Confidence 99999999997
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=9.9e-58 Score=461.24 Aligned_cols=270 Identities=27% Similarity=0.534 Sum_probs=242.6
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc-----------------cCC----------ccchH-------HHHHHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLRHF 171 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------------~G~----------~~~Pi-------~~~le~~ 171 (409)
++||||+||+++|+||||++.|+.++|++++ +|+ +.+|+ |+.++++
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i 86 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKI 86 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHH
Confidence 6899999999999999999999999988642 232 34676 7999999
Q ss_pred HHHHH-hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEEEEe
Q 015305 172 FATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNI 249 (409)
Q Consensus 172 ~~~~~-~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglVVDi 249 (409)
|++++ ++|+++|.++||+++|+++++ +..|++ +.|+||| |++|++++.++++|++||+|++||+|||+
T Consensus 87 ~~~~~~~~l~v~~~~~pvllte~~~~~------~~~r~~----~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDi 156 (378)
T PTZ00004 87 WHHTFYNELRVAPEEHPVLLTEAPLNP------KANREK----MTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDS 156 (378)
T ss_pred HHHHHHhhcccCCccCcceeecCCCCc------HHHHHH----HHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEEC
Confidence 98865 679999999999999998764 555644 6677777 99999999999999999999999999999
Q ss_pred CCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCc---HHHHHHHHHhhcccccchHHhhhcc----
Q 015305 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS---LYTVRTLKEKLCYVAADYKAELSKD---- 322 (409)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~---~~~ve~iKe~~c~v~~d~~~e~~~~---- 322 (409)
|++.|+|+||+||+++.+ ++.++++||++++++|+++|..++..+.+ .+++++|||++|||+.|++++++..
T Consensus 157 G~~~t~v~pV~dG~~l~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (378)
T PTZ00004 157 GDGVSHTVPIYEGYSLPH-AIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSS 235 (378)
T ss_pred CCCcEEEEEEECCEEeec-ceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCc
Confidence 999999999999999998 99999999999999999999998876543 5689999999999999998876431
Q ss_pred --ccceEEeCCCcEEEecceeeccccccccCCcCCcc-CCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccH
Q 015305 323 --TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (409)
Q Consensus 323 --~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~-~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf 399 (409)
....|+||||+.+.++.|||.+||+||+|+.+|.+ ..||+++|.+||.+||+ |+ |+.|++||||+||+|++|||
T Consensus 236 ~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~-d~--r~~L~~nIvl~GG~s~~~Gf 312 (378)
T PTZ00004 236 DKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDI-DI--RKDLYGNIVLSGGTTMYRGL 312 (378)
T ss_pred cccceEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCCh-hH--HHHHHhhEEeccchhcCcCH
Confidence 24679999999999999999999999999998888 89999999999999999 98 89999999999999999999
Q ss_pred HHHHhhhhcC
Q 015305 400 AGIRNSFNKQ 409 (409)
Q Consensus 400 ~eRL~~E~k~ 409 (409)
.+||++||+|
T Consensus 313 ~~RL~~EL~~ 322 (378)
T PTZ00004 313 PERLTKELTT 322 (378)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 7
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=4.8e-56 Score=428.60 Aligned_cols=277 Identities=25% Similarity=0.458 Sum_probs=237.4
Q ss_pred ccCCCCCCCceEEEeCCCCeEEEEEeCCCCCCccccccccc-----CC----------------------ccchH-----
Q 015305 117 IYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-----GN----------------------IESPM----- 164 (409)
Q Consensus 117 ~y~~~~~~~~~VVID~GS~~iKaGfage~~P~~~~~t~~~~-----G~----------------------~~~Pi----- 164 (409)
+|+++++ ++||||+||++|||||||+|.|++++|++++. |+ +..|+
T Consensus 5 ~yggdEv--~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv 82 (426)
T KOG0679|consen 5 VYGGDEV--SALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLV 82 (426)
T ss_pred ccccccc--ceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCCc
Confidence 7999999 99999999999999999999999999998752 11 12233
Q ss_pred --HHHHHHHHHHHHh-hcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcC
Q 015305 165 --YSRLRHFFATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAK 240 (409)
Q Consensus 165 --~~~le~~~~~~~~-~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G 240 (409)
||.++.+|++.|+ +|+++|.+||+||+||++| +++.|+| +.|++|| ++||++|++++++|++||+|
T Consensus 83 ~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN------~~~~Rek----~~ElmFE~~nvPAf~L~k~~v~~AFA~G 152 (426)
T KOG0679|consen 83 EDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWN------TRANREK----LTELMFEKLNVPAFYLAKTAVCTAFANG 152 (426)
T ss_pred ccHHHHHHHHHHHHhhhhhcCccccceeeecCCCC------cHHHHHH----HHHHHHhhcCCceEEEechHHHHHHhcC
Confidence 7899999999997 6999999999999999986 4777766 5566677 99999999999999999999
Q ss_pred CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCc-----------------------
Q 015305 241 RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS----------------------- 297 (409)
Q Consensus 241 ~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~----------------------- 297 (409)
+.||+|||||++.|+|+||+||+++.+ ++.+.++||+.|+..++++|+..++.+.+
T Consensus 153 rstalVvDiGa~~~svsPV~DG~Vlqk-~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~ 231 (426)
T KOG0679|consen 153 RSTALVVDIGATHTSVSPVHDGYVLQK-GVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVS 231 (426)
T ss_pred CCceEEEEecCCCceeeeeecceEeee-eeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCC
Confidence 999999999999999999999999999 99999999999999999999998765421
Q ss_pred -------------HHHHHHHHHhhcccccc-hHHhh-hccccceEEeCCCcEEEecceeeccccccccCCcCC-------
Q 015305 298 -------------LYTVRTLKEKLCYVAAD-YKAEL-SKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMAD------- 355 (409)
Q Consensus 298 -------------~~~ve~iKe~~c~v~~d-~~~e~-~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g------- 355 (409)
..++++.|+.++.|+.. |.++. ....++.|++|||.+.++|.+||++||.||+|+...
T Consensus 232 ~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~ 311 (426)
T KOG0679|consen 232 IPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAG 311 (426)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCcchhcccccccc
Confidence 12456666666666532 22221 123568899999999999999999999999998641
Q ss_pred -----ccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhcC
Q 015305 356 -----VRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNKQ 409 (409)
Q Consensus 356 -----~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k~ 409 (409)
....|+++++..||..||+ |+ |..|++|||+|||+|+|+||.+||++||.+
T Consensus 312 ~~~~~n~~lG~~~lv~sSi~~cDv-di--R~~L~~nVivtGGtSliqG~s~RL~~ELs~ 367 (426)
T KOG0679|consen 312 ATSHINTMLGLPHLVYSSINMCDV-DI--RSSLLGNVIVTGGTSLIQGFSERLNKELSK 367 (426)
T ss_pred CCCCCccccCchHHHHhhhccChH-HH--HHHhhccEEEecCcchhhhHHHHHHHHHHH
Confidence 2346999999999999999 99 999999999999999999999999999864
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=6.5e-55 Score=445.73 Aligned_cols=270 Identities=24% Similarity=0.448 Sum_probs=237.4
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc--------------------cCC----------ccchH-------HHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE--------------------FGN----------IESPM-------YSRL 168 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~--------------------~G~----------~~~Pi-------~~~l 168 (409)
++||||+||+++||||||++.|+.++|++++ +|+ +.+|+ ||.+
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~~ 84 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDLM 84 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHHH
Confidence 5899999999999999999999999887642 232 34677 7899
Q ss_pred HHHHHHHH-hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHc-------
Q 015305 169 RHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA------- 239 (409)
Q Consensus 169 e~~~~~~~-~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~------- 239 (409)
+++|++++ ++|+++|.++|++++||++++ ...|++ +.|+||| |++|++++.++++||+||+
T Consensus 85 e~l~~~~~~~~L~~~p~~~~vllte~~~~~------~~~Re~----l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~ 154 (414)
T PTZ00280 85 EKFWEQCIFKYLRCEPEEHYFILTEPPMNP------PENREY----TAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK 154 (414)
T ss_pred HHHHHHHHHHhhccCCCCCceEEeeCCCCc------HHHHHH----HHHHHhhccCCCeEEEecCHHHhHhhhccccccc
Confidence 99999765 779999999999999998864 556655 6677777 9999999999999999999
Q ss_pred ---CCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCc---HHHHHHHHHhhccccc
Q 015305 240 ---KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS---LYTVRTLKEKLCYVAA 313 (409)
Q Consensus 240 ---G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~---~~~ve~iKe~~c~v~~ 313 (409)
|+++|+|||+|++.|+|+||+||+++.+ ++.++++||+++|++|.++|++++..+.+ .+++++|||++|||+.
T Consensus 155 ~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 233 (414)
T PTZ00280 155 ELGGTLTGTVIDSGDGVTHVIPVVDGYVIGS-SIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAP 233 (414)
T ss_pred ccCCceeEEEEECCCCceEEEEEECCEEccc-ceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999998 89999999999999999999998876653 5689999999999999
Q ss_pred chHHhhhcc------ccceEEeCC---Cc--EEEecceeeccccccccCCcCCcc-CCchHHHHHHHHhcCCCCCccchH
Q 015305 314 DYKAELSKD------TQASLEIAG---EG--WFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSGDD 381 (409)
Q Consensus 314 d~~~e~~~~------~~~~y~Lpd---g~--~i~l~~erf~~~E~LF~P~~~g~~-~~gL~~~I~~sI~~~~~~dl~~r~ 381 (409)
|+.++++.. ....|++|| |+ .+.++.|||.+||+||+|+.++.+ ..||+++|.++|++||+ |+ |+
T Consensus 234 d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~-d~--r~ 310 (414)
T PTZ00280 234 DIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPI-DC--RR 310 (414)
T ss_pred cHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCCh-hh--HH
Confidence 988776531 234688887 33 789999999999999999987655 45999999999999999 98 89
Q ss_pred hhcCCcEEeccCCCCccHHHHHhhhhcC
Q 015305 382 AWFKTVILTGGSACLPGLAGIRNSFNKQ 409 (409)
Q Consensus 382 ~L~~NIvLtGG~S~ipGf~eRL~~E~k~ 409 (409)
+|++||||+||+|+||||.+||++|+++
T Consensus 311 ~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 311 PLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred HHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 9999999999999999999999999975
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.2e-53 Score=432.88 Aligned_cols=269 Identities=32% Similarity=0.585 Sum_probs=227.1
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc------------cCC----------ccchH-------HHHHHHHHHHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE------------FGN----------IESPM-------YSRLRHFFATIY 176 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~------------~G~----------~~~Pi-------~~~le~~~~~~~ 176 (409)
++||||+||++||+||||++.|+.++|+.++ +|+ +.+|+ |+.++.+|+++|
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~~~~ 84 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSPRSNLELRSPIENGVIVDWDALEEIWDYIF 84 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHTGTGEEEEESEETTEESSHHHHHHHHHHHH
T ss_pred CEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccchhheeeeeecccccccccccccccccccc
Confidence 8999999999999999999999999988642 232 23454 789999999988
Q ss_pred hh-cccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEEEEeCCcee
Q 015305 177 SR-MQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVT 254 (409)
Q Consensus 177 ~~-L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglVVDiG~~~T 254 (409)
.. |++++.++||++++|++++ +..| +.+.|+||| |++|+++++++++||+|++|++||+|||+|++.|
T Consensus 85 ~~~l~~~~~~~~vll~~~~~~~------~~~r----~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t 154 (393)
T PF00022_consen 85 SNLLKVDPSDHPVLLTEPPFNP------RSQR----EKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSST 154 (393)
T ss_dssp HTTT-SSGGGSEEEEEESTT--------HHHH----HHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-E
T ss_pred ccccccccccceeeeeccccCC------chhh----hhhhhhhhcccccceeeeeecccccccccccccccccccceeee
Confidence 65 8999999999999998753 5555 457788888 9999999999999999999999999999999999
Q ss_pred EEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCC--------------------CcHHHHHHHHHhhcccccc
Q 015305 255 SVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF--------------------GSLYTVRTLKEKLCYVAAD 314 (409)
Q Consensus 255 ~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~--------------------~~~~~ve~iKe~~c~v~~d 314 (409)
+|+||+||+++.+ +++++++||++++++|+++|++++... ....+++++|+++|+|+.+
T Consensus 155 ~v~pV~dG~~~~~-~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~ 233 (393)
T PF00022_consen 155 SVVPVVDGYVLPH-SIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSED 233 (393)
T ss_dssp EEEEEETTEE-GG-GBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSS
T ss_pred eeeeeeecccccc-ccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccc
Confidence 9999999999998 899999999999999999999974332 1245899999999999998
Q ss_pred hHH-hh---hccccceEEeCCCcEEEecceeeccccccccCCcCCccCC-------chHHHHHHHHhcCCCCCccchHhh
Q 015305 315 YKA-EL---SKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTM-------GLDQAVALCMDHCHYAELSGDDAW 383 (409)
Q Consensus 315 ~~~-e~---~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~-------gL~~~I~~sI~~~~~~dl~~r~~L 383 (409)
+.. +. .......|+||||+.+.++.+||.+||+||+|...+.... ||+++|.++|++|++ |+ |+.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~-d~--r~~l 310 (393)
T PF00022_consen 234 PDEEQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPI-DL--RKEL 310 (393)
T ss_dssp HHHHHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTT-TT--HHHH
T ss_pred cccccccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cc--cccc
Confidence 764 11 1235678999999999999999999999999999887665 999999999999998 88 8999
Q ss_pred cCCcEEeccCCCCccHHHHHhhhhc
Q 015305 384 FKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 384 ~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
++|||||||+|++|||.+||++||+
T Consensus 311 ~~nIvl~GG~S~i~G~~eRL~~eL~ 335 (393)
T PF00022_consen 311 LSNIVLTGGSSLIPGFKERLQQELR 335 (393)
T ss_dssp HTTEEEESGGGGSTTHHHHHHHHHH
T ss_pred ccceEEecccccccchHHHHHHHhh
Confidence 9999999999999999999999986
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=5.5e-52 Score=418.41 Aligned_cols=270 Identities=29% Similarity=0.587 Sum_probs=240.1
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc----------------cCC----------ccchH-------HHHHHHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE----------------FGN----------IESPM-------YSRLRHFF 172 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~----------------~G~----------~~~Pi-------~~~le~~~ 172 (409)
++||||+||++||+||+|++.|+.++|+++. +|+ +.+|+ |+.++++|
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~ 81 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIW 81 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHH
Confidence 5799999999999999999999999987642 132 35676 78999999
Q ss_pred HHHHh-hcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEEEEeC
Q 015305 173 ATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIG 250 (409)
Q Consensus 173 ~~~~~-~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglVVDiG 250 (409)
+++++ .|+++|.++||++++|.+++ ...| +.+.|++|| +++|++++++++++++|++|.++|+|||+|
T Consensus 82 ~~~~~~~l~~~~~~~~vll~~p~~~~------~~~r----~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG 151 (373)
T smart00268 82 DYTFFNELRVEPEEHPVLLTEPPMNP------KSNR----EKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSG 151 (373)
T ss_pred HHHHhhhcCCCCccCeeEEecCCCCC------HHHH----HHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecC
Confidence 99987 69999999999999998753 4555 457788888 999999999999999999999999999999
Q ss_pred CceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhhhc------
Q 015305 251 FQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSK------ 321 (409)
Q Consensus 251 ~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~~~------ 321 (409)
++.|+|+||+||+++.+ +++++++||++++++|+++|++++..+. ..+.++++|+++||++.++++++..
T Consensus 152 ~~~t~v~pv~~G~~~~~-~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~ 230 (373)
T smart00268 152 DGVTHVVPVVDGYVLPH-AIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSE 230 (373)
T ss_pred CCcceEEEEECCEEchh-hheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhccc
Confidence 99999999999999998 8999999999999999999998544332 3578999999999999998776542
Q ss_pred --cccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccH
Q 015305 322 --DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (409)
Q Consensus 322 --~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf 399 (409)
.....|++|||+.+.++.+||.+||+||+|+..+.+..||+++|.++|++||+ |+ |++|++||+||||+|++|||
T Consensus 231 ~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~-d~--r~~l~~nIvltGG~s~i~Gl 307 (373)
T smart00268 231 SSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDI-DV--RKDLYENIVLSGGSTLIPGF 307 (373)
T ss_pred ccccceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCH-hH--HHHHHhCeEeecccccCcCH
Confidence 13467999999999999999999999999999998889999999999999998 98 89999999999999999999
Q ss_pred HHHHhhhhcC
Q 015305 400 AGIRNSFNKQ 409 (409)
Q Consensus 400 ~eRL~~E~k~ 409 (409)
.+||++|+++
T Consensus 308 ~~RL~~el~~ 317 (373)
T smart00268 308 GERLEKELKQ 317 (373)
T ss_pred HHHHHHHHHH
Confidence 9999999964
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.2e-49 Score=401.34 Aligned_cols=269 Identities=29% Similarity=0.558 Sum_probs=237.5
Q ss_pred eEEEeCCCCeEEEEEeCCCCCCcccccccc-----------------cCC-----------ccchH-------HHHHHHH
Q 015305 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN-----------IESPM-------YSRLRHF 171 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------------~G~-----------~~~Pi-------~~~le~~ 171 (409)
+||||+||+++|+||+|++.|+.++|+++. +|+ +.+|+ |+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 589999999999999999999998887652 231 24576 7889999
Q ss_pred HHHHHhh-cccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEEEEe
Q 015305 172 FATIYSR-MQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNI 249 (409)
Q Consensus 172 ~~~~~~~-L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglVVDi 249 (409)
|+++|++ |.+++.++|+++++|++++ ...| +.+.++||| +++|++++++++++++|++|+++|+|||+
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~------~~~r----~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDi 150 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNP------KSNR----EKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDS 150 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCC------HHHH----HHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEEC
Confidence 9998864 7888899999999998753 4444 457788888 99999999999999999999999999999
Q ss_pred CCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhhh------
Q 015305 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELS------ 320 (409)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~~------ 320 (409)
|++.|+|+||+||+++.+ ++.++++||++++++|.++|+.++..+. ..+.+++|||++|||+.+++++..
T Consensus 151 G~~~t~i~pv~~G~~~~~-~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~ 229 (371)
T cd00012 151 GDGVTHVVPVYDGYVLPH-AIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKET 229 (371)
T ss_pred CCCeeEEEEEECCEEchh-hheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccC
Confidence 999999999999999998 8899999999999999999998875432 357899999999999998876641
Q ss_pred ccccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHH
Q 015305 321 KDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400 (409)
Q Consensus 321 ~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~ 400 (409)
......|.|||++.+.++.|||.+||+||+|...+....+|+++|.++|++|++ |+ |+.+++||+||||+|++|||.
T Consensus 230 ~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~-~~--~~~l~~~Ivl~GG~s~~~gl~ 306 (371)
T cd00012 230 SLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDI-DL--RKDLYSNIVLSGGSTLFPGFG 306 (371)
T ss_pred CccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCH-hH--HHHHHhCEEEeCCccCCcCHH
Confidence 123467999999999999999999999999999888889999999999999998 87 899999999999999999999
Q ss_pred HHHhhhhcC
Q 015305 401 GIRNSFNKQ 409 (409)
Q Consensus 401 eRL~~E~k~ 409 (409)
+||++|+++
T Consensus 307 ~rl~~el~~ 315 (371)
T cd00012 307 ERLQKELLK 315 (371)
T ss_pred HHHHHHHHH
Confidence 999999873
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.6e-46 Score=380.13 Aligned_cols=269 Identities=28% Similarity=0.555 Sum_probs=231.8
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc------------------cCC------------ccchH-------HHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE------------------FGN------------IESPM-------YSRL 168 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~------------------~G~------------~~~Pi-------~~~l 168 (409)
++||||+||++||+||||++.|+.++|++++ +|+ +++|+ |+.+
T Consensus 7 ~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~~ 86 (444)
T COG5277 7 PTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAM 86 (444)
T ss_pred CeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHHH
Confidence 5699999999999999999999999987642 111 23444 7899
Q ss_pred HHHHHHHHhh---cccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCc--
Q 015305 169 RHFFATIYSR---MQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRT-- 242 (409)
Q Consensus 169 e~~~~~~~~~---L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~-- 242 (409)
+.+|++.|.. +...+.++|++++||++++ ...|++ +.|++|| |++|++++..+++|++|+.|+.
T Consensus 87 e~~w~~~~~~~~~~~~~~~~~pllltep~~n~------~~~re~----~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~ 156 (444)
T COG5277 87 EQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNP------PSNREK----ITELLFETLNVPALYLAIQAVLSLYASGSSDE 156 (444)
T ss_pred HHHHHHhhcchhhccCCCcCCceEEeccCCCc------HHHHHH----HHHHHHHhcCCcceEeeHHHHHHHHhcCCCCC
Confidence 9999987744 7778999999999999875 566654 6677777 9999999999999999999999
Q ss_pred ceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHh-----cCCCCCc------HHHHHHHHHhhc--
Q 015305 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS------LYTVRTLKEKLC-- 309 (409)
Q Consensus 243 sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~------~~~ve~iKe~~c-- 309 (409)
+|+|||+|++.|+|+||+||.++.+ +++++++||++++.+|.++|.. +++.+.+ .++++.+|+++|
T Consensus 157 ~g~ViD~G~~~t~v~PV~DG~~l~~-a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~ 235 (444)
T COG5277 157 TGLVIDSGDSVTHVIPVVDGIVLPK-AVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCET 235 (444)
T ss_pred ceEEEEcCCCceeeEeeeccccccc-cceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccc
Confidence 9999999999999999999999999 9999999999999999999999 5555443 679999999999
Q ss_pred -----ccccchHHhhhc---------------------cccceEEeCCCcEEEecce-eeccccccccCC--cCCccCCc
Q 015305 310 -----YVAADYKAELSK---------------------DTQASLEIAGEGWFTLSKE-RFQTGEILFQPR--MADVRTMG 360 (409)
Q Consensus 310 -----~v~~d~~~e~~~---------------------~~~~~y~Lpdg~~i~l~~e-rf~~~E~LF~P~--~~g~~~~g 360 (409)
|+..+.+++... ....++++||++.+.++.| ||.+||.||+|. ..+.+..+
T Consensus 236 ~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~ 315 (444)
T COG5277 236 DDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAG 315 (444)
T ss_pred cccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccc
Confidence 888765443211 0234688999999999999 999999999999 66555555
Q ss_pred ---------------------------hHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 361 ---------------------------LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 361 ---------------------------L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
|++++.++|..|+. |. |+.|++|||||||+|++|||.+||++|++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~-~~--r~~l~~nivitGGts~~pg~~~Rl~~el~ 387 (444)
T COG5277 316 KIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDE-DV--RKSLYSNIVLTGGTSKIPGFAERLQKELT 387 (444)
T ss_pred cchhhhhhhhhhccccccccccccccchHHHHHHHHHhccH-HH--HHHHhhCEEEecCccCCCCHHHHHHHHHH
Confidence 99999999999997 87 89999999999999999999999999986
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=4.9e-45 Score=344.99 Aligned_cols=270 Identities=20% Similarity=0.385 Sum_probs=225.9
Q ss_pred CceEEEeCCCCeEEEEEeCCCCCCccccccc---------ccCC------------ccchH-------HHHHHHHHHHHH
Q 015305 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFL---------EFGN------------IESPM-------YSRLRHFFATIY 176 (409)
Q Consensus 125 ~~~VVID~GS~~iKaGfage~~P~~~~~t~~---------~~G~------------~~~Pi-------~~~le~~~~~~~ 176 (409)
+++||+|+|++++|+|+|+++.|..+..... .+|| .+.|. |+.-..+|+++|
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~~vpNcl~kaK~~~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWDy~f 82 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPFVVPNCLAKAKFGRRRSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVWDYCF 82 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCceeccchhhhcccccchhhhhhhhhhccCccceEEeehhhcceeEeehhHHHHHHHHh
Confidence 3789999999999999999998876543211 1222 13454 677889999999
Q ss_pred hhcc--cCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHc---C--------Cc
Q 015305 177 SRMQ--VKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA---K--------RT 242 (409)
Q Consensus 177 ~~L~--v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~---G--------~~ 242 (409)
...+ ++..++.++++||.++. .+ +-|...|++|| |++.+++=...+.|+++-. + ..
T Consensus 83 ~~~~~~~~~~~~~ivlTep~~~~------ps----i~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~ 152 (400)
T KOG0680|consen 83 GNPGFDVEGKDHNIVLTEPCMTF------PS----IQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSE 152 (400)
T ss_pred cCCCcCcccCcceEEEecccccc------cc----hhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccc
Confidence 7655 66779999999998864 22 33557788888 9999999999988888762 1 23
Q ss_pred ceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC-cHHHHHHHHHhhcccccchHHhhhc
Q 015305 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG-SLYTVRTLKEKLCYVAADYKAELSK 321 (409)
Q Consensus 243 sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~-~~~~ve~iKe~~c~v~~d~~~e~~~ 321 (409)
.++|||.|++.|+|+|+.+|....+ +++|+++||+.||++|++.+..+.++.- ..+++++|||.+|||++|+.+.+..
T Consensus 153 c~lVIDsGysfThIip~v~g~~~~q-aV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 153 CCLVIDSGYSFTHIIPVVKGIPYYQ-AVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred eEEEEeCCCceEEEehhhcCcchhh-ceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHH
Confidence 6899999999999999999999998 9999999999999999999999887753 4689999999999999999877632
Q ss_pred c--------ccceEEeCC-------------------CcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCC
Q 015305 322 D--------TQASLEIAG-------------------EGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHY 374 (409)
Q Consensus 322 ~--------~~~~y~Lpd-------------------g~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~ 374 (409)
. ....|.||| .+.|++++|||.+||+||+|+.+|++.+||+++|.+||..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 1 123466664 3568899999999999999999999999999999999999997
Q ss_pred CCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 375 AELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 375 ~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
++ |+.|+.|||++||++++|||.+||..||+
T Consensus 312 -~~--~p~l~~NIv~iGGn~~fPgF~~RL~~Elr 342 (400)
T KOG0680|consen 312 -EV--RPLLLENIVCIGGNSNFPGFRQRLARELR 342 (400)
T ss_pred -HH--HHHHHhcEEEecCccCCcchHHHHHHHHH
Confidence 77 89999999999999999999999999985
No 14
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=5.4e-39 Score=304.44 Aligned_cols=268 Identities=25% Similarity=0.476 Sum_probs=225.5
Q ss_pred eEEEeCCCCeEEEEEeCCCCCCccccccccc-------------------------CC---------ccchH-------H
Q 015305 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-------------------------GN---------IESPM-------Y 165 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~~P~~~~~t~~~~-------------------------G~---------~~~Pi-------~ 165 (409)
++|+|+|+.++|.||||+..|+.++|+++.. |+ +.+|+ |
T Consensus 6 p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~~~~ysl~ypiRhg~ve~w 85 (415)
T KOG0678|consen 6 PCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALDATTYSLKYPIRHGQVEDW 85 (415)
T ss_pred ceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHhhcccccccceeccccccH
Confidence 4999999999999999999999998886532 21 34565 7
Q ss_pred HHHHHHHH-HHHhhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcC---
Q 015305 166 SRLRHFFA-TIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAK--- 240 (409)
Q Consensus 166 ~~le~~~~-~~~~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G--- 240 (409)
|.|+.+|. .+|+.|...|++|-.+|+||+.++ .++|+... |++|| ||||.+|++-++++|+-++-
T Consensus 86 d~mer~~~q~ifkylr~ePedh~fLlteppln~------penreyta----eImfEsfnvpglyiAVqavLALaaswts~ 155 (415)
T KOG0678|consen 86 DLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQ------PENREYTA----EIMFESFNVPGLYIAVQAVLALAASWTSR 155 (415)
T ss_pred HHHHHHHhhhhhhhhcCCcccceEEecCCCCCC------chhhHHHH----HhhhhhccCchHHHHHHHHHHHHHHHHHh
Confidence 89999995 567889999999999999998764 56776544 55666 99999999999999987663
Q ss_pred -----CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccc
Q 015305 241 -----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVA 312 (409)
Q Consensus 241 -----~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~ 312 (409)
.-||+|||.|.+.|+|+||.+|+++-+ +++.++++|+++|.+++++|++++...+ +++.++.|||++||++
T Consensus 156 ~v~er~ltG~VidsGdgvThvipvaEgyVigS-cik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~c 234 (415)
T KOG0678|consen 156 QVGERFLTGIVIDSGDGVTHVIPVAEGYVIGS-CIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTC 234 (415)
T ss_pred hhhhheeeeEEEecCCCeeEEEEeecceEEee-eeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccC
Confidence 468999999999999999999999998 8999999999999999999998887654 4678999999999999
Q ss_pred cchHHhhhcccc---------ceEEeCCC--cEEEecceeeccccccccCCcCCcc-CCchHHHHHHHHhcCCCCCccch
Q 015305 313 ADYKAELSKDTQ---------ASLEIAGE--GWFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSGD 380 (409)
Q Consensus 313 ~d~~~e~~~~~~---------~~y~Lpdg--~~i~l~~erf~~~E~LF~P~~~g~~-~~gL~~~I~~sI~~~~~~dl~~r 380 (409)
.|.-.|..+... ....+-.| ..++++-|||..||++|+|...+.+ ...|++.+-..|++|++ |. |
T Consensus 235 Pdivkef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pI-dv--r 311 (415)
T KOG0678|consen 235 PDIVKEFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPI-DV--R 311 (415)
T ss_pred cHHHHHHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCc-cc--c
Confidence 998777654211 01121223 3467789999999999999987654 45799999999999999 88 8
Q ss_pred HhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 381 DAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 381 ~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
+-||+||+++||.+++++|..|+++++|
T Consensus 312 r~ly~nivlsggst~fk~fgr~lqrD~k 339 (415)
T KOG0678|consen 312 RPLYKNIVLSGGSTMFKDFGRRLQRDLK 339 (415)
T ss_pred hhhhhHHhhccchHHHHHhhhhccHHHH
Confidence 9999999999999999999999999987
No 15
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=4.1e-37 Score=307.42 Aligned_cols=158 Identities=26% Similarity=0.496 Sum_probs=136.4
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc-------------cCC-----------ccchH-------HHHHHHHHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------FGN-----------IESPM-------YSRLRHFFAT 174 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~-------------~G~-----------~~~Pi-------~~~le~~~~~ 174 (409)
.+||||+||+.|||||+|+..|+.+|++++. +|| .++|+ |+.+|+++++
T Consensus 24 ~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilDY 103 (645)
T KOG0681|consen 24 IPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILDY 103 (645)
T ss_pred CcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhhhhhhhhccCCCCCcCCccccHHHHHHHHHH
Confidence 6899999999999999999999999887542 444 24565 8999999999
Q ss_pred HHhhcccCCC--CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHc-C---CcceEEE
Q 015305 175 IYSRMQVKPS--TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA-K---RTSGIVV 247 (409)
Q Consensus 175 ~~~~L~v~p~--~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~-G---~~sglVV 247 (409)
+|.+|+++++ +||+++||+.+|| ...|++ |.|+||| ||||+|.+.-+++.|.|.. + ..+|+||
T Consensus 104 ~F~~LG~~~~~idhPIilTE~laNP------~~~R~~----m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~lii 173 (645)
T KOG0681|consen 104 IFGKLGVDGQGIDHPIILTEALANP------VYSRSE----MVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLII 173 (645)
T ss_pred HHHhcCCCccCCCCCeeeehhccCh------HHHHHH----HHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEE
Confidence 9999999884 8999999999975 677766 4566666 9999999999999999943 3 3479999
Q ss_pred EeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCC
Q 015305 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNIN 294 (409)
Q Consensus 248 DiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~ 294 (409)
++|++.|+|+||.||..+.. .++++++||.+...||.++|+.+++.
T Consensus 174 s~g~~~T~vipvldG~~il~-~~kRiN~GG~qa~dYL~~Lmq~Kyp~ 219 (645)
T KOG0681|consen 174 SMGHSATHVIPVLDGRLILK-DVKRINWGGYQAGDYLSRLMQLKYPF 219 (645)
T ss_pred ecCCCcceeEEEecCchhhh-cceeeccCcchHHHHHHHHHhccCcc
Confidence 99999999999999998887 78999999999999999999987544
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=2e-29 Score=250.66 Aligned_cols=253 Identities=17% Similarity=0.174 Sum_probs=190.9
Q ss_pred EEEeCCCCeEEEEEeCCCCCCccccccc----------ccCC--------------ccchH-------HHHHHHHHHHHH
Q 015305 128 VIIDGGSGYCKFGWSKYDCPSGRTATFL----------EFGN--------------IESPM-------YSRLRHFFATIY 176 (409)
Q Consensus 128 VVID~GS~~iKaGfage~~P~~~~~t~~----------~~G~--------------~~~Pi-------~~~le~~~~~~~ 176 (409)
|+||+||.++|+|++|++ +....||++ .+|+ +.+|+ |+.++.+|++++
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~~ 89 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYFI 89 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHHH
Confidence 999999999999999875 233345443 2342 24566 678999999998
Q ss_pred hhccc-CCC-CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCC-----cceEEEE
Q 015305 177 SRMQV-KPS-TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVVN 248 (409)
Q Consensus 177 ~~L~v-~p~-~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~-----~sglVVD 248 (409)
+++.. .+. .++++++.|...+ ...|+. +.+ +|| +|++.++++++|++|+|++|. ++++|||
T Consensus 90 ~~~~~~~~~~~~~vvit~P~~~~------~~~r~~----~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvD 158 (335)
T PRK13930 90 KKARGRRFFRKPRIVICVPSGIT------EVERRA----VRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVD 158 (335)
T ss_pred HHHhhcccCCCCcEEEEECCCCC------HHHHHH----HHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEE
Confidence 77543 333 5678888887542 334433 223 455 999999999999999999997 5689999
Q ss_pred eCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHh-hhc-cccce
Q 015305 249 IGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAE-LSK-DTQAS 326 (409)
Q Consensus 249 iG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e-~~~-~~~~~ 326 (409)
+|+++|++++|.+|.++.. ...++||+++|+.|.+++..+.....+.+.+|++|+++|++..+++.+ +.. .....
T Consensus 159 iG~gttdvs~v~~g~~~~~---~~~~lGG~~id~~l~~~l~~~~~~~~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~ 235 (335)
T PRK13930 159 IGGGTTEVAVISLGGIVYS---ESIRVAGDEMDEAIVQYVRRKYNLLIGERTAEEIKIEIGSAYPLDEEESMEVRGRDLV 235 (335)
T ss_pred eCCCeEEEEEEEeCCEEee---cCcCchhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhcCcCCCCCceEEEECccCC
Confidence 9999999999999998764 668999999999999999875321124578999999999988764322 110 01112
Q ss_pred EEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCC-cEEeccCCCCccHHHHHhh
Q 015305 327 LEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKT-VILTGGSACLPGLAGIRNS 405 (409)
Q Consensus 327 y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~N-IvLtGG~S~ipGf~eRL~~ 405 (409)
+.+|+ .+.++.++| .|++|.|. .++.+.|.++|++|+. ++ +.++++| |+|+||+|++|||.+||++
T Consensus 236 ~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~ipg~~~~l~~ 302 (335)
T PRK13930 236 TGLPK--TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPP-EL--AADIIDRGIVLTGGGALLRGLDKLLSE 302 (335)
T ss_pred CCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCH-HH--hhHHHhCCEEEECchhcchhHHHHHHH
Confidence 33442 566777766 48888763 4799999999999987 76 6789998 9999999999999999999
Q ss_pred hhc
Q 015305 406 FNK 408 (409)
Q Consensus 406 E~k 408 (409)
++.
T Consensus 303 ~~~ 305 (335)
T PRK13930 303 ETG 305 (335)
T ss_pred HHC
Confidence 874
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=4.3e-28 Score=241.13 Aligned_cols=252 Identities=19% Similarity=0.203 Sum_probs=184.5
Q ss_pred eEEEeCCCCeEEEEEeCCCCCCccccccc----------ccCC--------------ccchH-------HHHHHHHHHHH
Q 015305 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFL----------EFGN--------------IESPM-------YSRLRHFFATI 175 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~~P~~~~~t~~----------~~G~--------------~~~Pi-------~~~le~~~~~~ 175 (409)
.|+||+||.++|+|++|++. ....||++ .+|+ +.+|+ |+.++.+|+++
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~~ 85 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKYF 85 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHHH
Confidence 49999999999999999874 33444433 2342 24566 57789999888
Q ss_pred Hhh-cccCCCCCC-eEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCC-----cceEEE
Q 015305 176 YSR-MQVKPSTQP-IVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVV 247 (409)
Q Consensus 176 ~~~-L~v~p~~~p-Vll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~-----~sglVV 247 (409)
+.+ ++. +.++| ++++.|... ...+++. ++.+|+ +|++.++++++|++|+|++|. ++++||
T Consensus 86 ~~~~~~~-~~~~~~~vi~vP~~~-------~~~~r~~----~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvv 153 (334)
T PRK13927 86 IKKVHKN-FRPSPRVVICVPSGI-------TEVERRA----VRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVV 153 (334)
T ss_pred HHHHhhc-cCCCCcEEEEeCCCC-------CHHHHHH----HHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEE
Confidence 765 455 66664 666666432 2344443 444555 999999999999999999996 457999
Q ss_pred EeCCceeEEEEE-ecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchH-Hhhhcc-cc
Q 015305 248 NIGFQVTSVVPI-LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYK-AELSKD-TQ 324 (409)
Q Consensus 248 DiG~~~T~v~PV-~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~-~e~~~~-~~ 324 (409)
|+|+++|+++++ ++|....+ . .++||+++|+.|.+++.++.....+.+.+|++|+++|++..+.+ .+.... ..
T Consensus 154 DiGggttdvs~v~~~~~~~~~-~---~~lGG~~id~~l~~~l~~~~~~~~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~~ 229 (334)
T PRK13927 154 DIGGGTTEVAVISLGGIVYSK-S---VRVGGDKFDEAIINYVRRNYNLLIGERTAERIKIEIGSAYPGDEVLEMEVRGRD 229 (334)
T ss_pred EeCCCeEEEEEEecCCeEeeC-C---cCChHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHhhccCCCCCCceEEEeCcc
Confidence 999999999999 77776654 3 48999999999999987543211245789999999999865432 111100 01
Q ss_pred ceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCC-cEEeccCCCCccHHHHH
Q 015305 325 ASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKT-VILTGGSACLPGLAGIR 403 (409)
Q Consensus 325 ~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~N-IvLtGG~S~ipGf~eRL 403 (409)
..+.+|+ .+.++.++|. |++|.|. .++.+.|.++|++|+. ++ +++++++ |+|+||+|++|||.+||
T Consensus 230 ~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~ipgl~~~l 296 (334)
T PRK13927 230 LVTGLPK--TITISSNEIR--EALQEPL------SAIVEAVKVALEQTPP-EL--AADIVDRGIVLTGGGALLRGLDKLL 296 (334)
T ss_pred cCCCCCe--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHHCCc-hh--hhhhhcCCEEEECchhhhhHHHHHH
Confidence 1123332 5677777764 8888773 4799999999999987 77 5788875 99999999999999999
Q ss_pred hhhhc
Q 015305 404 NSFNK 408 (409)
Q Consensus 404 ~~E~k 408 (409)
+++++
T Consensus 297 ~~~~~ 301 (334)
T PRK13927 297 SEETG 301 (334)
T ss_pred HHHHC
Confidence 99874
No 18
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.94 E-value=4.2e-26 Score=227.18 Aligned_cols=252 Identities=22% Similarity=0.259 Sum_probs=184.4
Q ss_pred eEEEeCCCCeEEEEEe-CCC----CCCcccc-----cccccCC--------------ccchH-------HHHHHHHHHHH
Q 015305 127 SVIIDGGSGYCKFGWS-KYD----CPSGRTA-----TFLEFGN--------------IESPM-------YSRLRHFFATI 175 (409)
Q Consensus 127 ~VVID~GS~~iKaGfa-ge~----~P~~~~~-----t~~~~G~--------------~~~Pi-------~~~le~~~~~~ 175 (409)
.+=||+||.++++ |. +.. .|+++.- ..+.+|+ +.+|+ |+..+.+|+++
T Consensus 6 ~~giDlGt~~~~i-~~~~~~~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~l~~~ 84 (335)
T PRK13929 6 EIGIDLGTANILV-YSKNKGIILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLLKQI 84 (335)
T ss_pred eEEEEcccccEEE-EECCCcEEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHHHHHH
Confidence 4889999999987 43 221 3443311 1123453 23455 57777788777
Q ss_pred Hh----hcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcC-----CcceEE
Q 015305 176 YS----RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK-----RTSGIV 246 (409)
Q Consensus 176 ~~----~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G-----~~sglV 246 (409)
++ .++.++..+++++++|... +...|+++.+ .++. +|++.+++++++++|++++| ..+++|
T Consensus 85 ~~~~~~~l~~~~~~~~vvitvP~~~------~~~~R~~l~~-a~~~---ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lv 154 (335)
T PRK13929 85 MKKAGKNIGMTFRKPNVVVCTPSGS------TAVERRAISD-AVKN---CGAKNVHLIEEPVAAAIGADLPVDEPVANVV 154 (335)
T ss_pred HHHHHHhcCCCCCCCeEEEEcCCCC------CHHHHHHHHH-HHHH---cCCCeeEeecCHHHHHHhcCCCcCCCceEEE
Confidence 65 4676676778999999764 3667766544 3333 99999999999999999997 567899
Q ss_pred EEeCCceeEEEEE-ecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhcc--c
Q 015305 247 VNIGFQVTSVVPI-LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKD--T 323 (409)
Q Consensus 247 VDiG~~~T~v~PV-~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~--~ 323 (409)
||+|+++|+++++ ++|.... ...++||+++|+.|.+++..+.....+...+|++|+++|++..+++++.... .
T Consensus 155 vDiG~gtt~v~vi~~~~~~~~----~~~~~GG~~id~~l~~~l~~~~~~~~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~ 230 (335)
T PRK13929 155 VDIGGGTTEVAIISFGGVVSC----HSIRIGGDQLDEDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGR 230 (335)
T ss_pred EEeCCCeEEEEEEEeCCEEEe----cCcCCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHcCCCCCCCCceEEEeCC
Confidence 9999999999999 5554433 3368999999999999988643211245789999999999876543321110 1
Q ss_pred cceEEeCCCcEEEecceeec--cccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcC-CcEEeccCCCCccHH
Q 015305 324 QASLEIAGEGWFTLSKERFQ--TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLA 400 (409)
Q Consensus 324 ~~~y~Lpdg~~i~l~~erf~--~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~-NIvLtGG~S~ipGf~ 400 (409)
...+.+| ..+.++.++|. ++|.+|+ +.+.|.+++++|+. ++ +.++++ +||||||+|++|||.
T Consensus 231 ~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~-~l--~~~~~~~gIvLtGG~s~lpgl~ 295 (335)
T PRK13929 231 DLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPP-EL--SGDIVDRGVILTGGGALLNGIK 295 (335)
T ss_pred ccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCc-cc--chhhcCCCEEEEchhhhhhhHH
Confidence 1123344 46788888775 5788875 89999999999998 87 678888 699999999999999
Q ss_pred HHHhhhhc
Q 015305 401 GIRNSFNK 408 (409)
Q Consensus 401 eRL~~E~k 408 (409)
+||++++.
T Consensus 296 e~l~~~~~ 303 (335)
T PRK13929 296 EWLSEEIV 303 (335)
T ss_pred HHHHHHHC
Confidence 99999874
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.93 E-value=2.4e-25 Score=221.48 Aligned_cols=253 Identities=19% Similarity=0.170 Sum_probs=183.7
Q ss_pred EEEeCCCCeEEEEEeCCC----CCCccc-c------c--ccccCC--------------ccchH-------HHHHHHHHH
Q 015305 128 VIIDGGSGYCKFGWSKYD----CPSGRT-A------T--FLEFGN--------------IESPM-------YSRLRHFFA 173 (409)
Q Consensus 128 VVID~GS~~iKaGfage~----~P~~~~-~------t--~~~~G~--------------~~~Pi-------~~~le~~~~ 173 (409)
+=||+||.++++-..+.. .|+++. . + ++.+|+ +.+|+ |+.++.+|+
T Consensus 5 ~giDlGt~~s~i~~~~~~~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~~ 84 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMIK 84 (333)
T ss_pred eEEecCcceEEEEECCCCEEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHHH
Confidence 779999999998654442 365432 1 1 133443 23566 677888998
Q ss_pred HHHhh-cccCCCCC-CeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCC-----cceE
Q 015305 174 TIYSR-MQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGI 245 (409)
Q Consensus 174 ~~~~~-L~v~p~~~-pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~-----~sgl 245 (409)
+++++ ++.....+ ++++++|...+ ...|+. ++.+|| +|++.++++++|++|+|++|. .+++
T Consensus 85 ~~l~~~~~~~~~~~~~~vitvP~~~~------~~~r~~-----~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~l 153 (333)
T TIGR00904 85 YFIKQVHSRKSFFKPRIVICVPSGIT------PVERRA-----VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSM 153 (333)
T ss_pred HHHHHHhcccccCCCcEEEEeCCCCC------HHHHHH-----HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEE
Confidence 88765 44322233 58899987652 445543 233455 999999999999999999997 6789
Q ss_pred EEEeCCceeEEEEE-ecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHh--hhc-
Q 015305 246 VVNIGFQVTSVVPI-LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAE--LSK- 321 (409)
Q Consensus 246 VVDiG~~~T~v~PV-~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e--~~~- 321 (409)
|||+|+++|++++| ++|....+ . .++||+++|+.|.+++..+.....+.+.+|++|+++|++..++.++ +..
T Consensus 154 VvDiG~gttdvs~v~~~~~~~~~-~---~~lGG~did~~l~~~l~~~~~~~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~ 229 (333)
T TIGR00904 154 VVDIGGGTTEVAVISLGGIVVSR-S---IRVGGDEFDEAIINYIRRTYNLLIGEQTAERIKIEIGSAYPLNDEPRKMEVR 229 (333)
T ss_pred EEEcCCCeEEEEEEEeCCEEecC-C---ccchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhccccccccccceeec
Confidence 99999999999999 77776654 2 4899999999999988754322224678999999999987653221 110
Q ss_pred cccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcC-CcEEeccCCCCccHH
Q 015305 322 DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLA 400 (409)
Q Consensus 322 ~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~-NIvLtGG~S~ipGf~ 400 (409)
.....+.+|++. .++.+ .+.|++|+|. .++.+.|.+++++|+. ++ +.++++ ||+||||+|++|||.
T Consensus 230 ~~~~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~l~~~~IvL~GGss~ipgl~ 296 (333)
T TIGR00904 230 GRDLVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPP-EL--AADIVERGIVLTGGGALLRNLD 296 (333)
T ss_pred CccccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCc-hh--hhhhccCCEEEECcccchhhHH
Confidence 111235566543 44444 5779999873 4699999999999998 77 678886 799999999999999
Q ss_pred HHHhhhhc
Q 015305 401 GIRNSFNK 408 (409)
Q Consensus 401 eRL~~E~k 408 (409)
+||+++++
T Consensus 297 e~l~~~~~ 304 (333)
T TIGR00904 297 KLLSKETG 304 (333)
T ss_pred HHHHHHHC
Confidence 99999874
No 20
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.90 E-value=4.6e-23 Score=205.43 Aligned_cols=254 Identities=19% Similarity=0.209 Sum_probs=180.3
Q ss_pred EEEeCCCCeEEEEEeCCC----CCCccc-c----cccccCC--------------ccchH-------HHHHHHHHHHHHh
Q 015305 128 VIIDGGSGYCKFGWSKYD----CPSGRT-A----TFLEFGN--------------IESPM-------YSRLRHFFATIYS 177 (409)
Q Consensus 128 VVID~GS~~iKaGfage~----~P~~~~-~----t~~~~G~--------------~~~Pi-------~~~le~~~~~~~~ 177 (409)
+=||+||.++++-..++. .|+.+. . .++.+|+ +.+|+ |+..+.+|+++++
T Consensus 6 ~gIDlGt~~~~i~~~~~~~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~~~~ 85 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKGIVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKYFIN 85 (336)
T ss_pred eEEEcccccEEEEECCCCEEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHHHHH
Confidence 789999999999766542 455321 1 1223443 12465 5778889999887
Q ss_pred hcccC-CCCCC-eEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCC-----cceEEEEe
Q 015305 178 RMQVK-PSTQP-IVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVVNI 249 (409)
Q Consensus 178 ~L~v~-p~~~p-Vll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~-----~sglVVDi 249 (409)
++... +.++| ++++.|... ...+++.. +.+|+ +|++.+.+++++++|++++|. .+++|||+
T Consensus 86 ~~~~~~~~~~p~~vitvP~~~-------~~~~r~~~----~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDi 154 (336)
T PRK13928 86 KACGKRFFSKPRIMICIPTGI-------TSVEKRAV----REAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDI 154 (336)
T ss_pred HHhccCCCCCCeEEEEeCCCC-------CHHHHHHH----HHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEe
Confidence 76544 55777 888886543 23344433 33444 999999999999999999996 67899999
Q ss_pred CCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHH-hhhcc-ccceE
Q 015305 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKA-ELSKD-TQASL 327 (409)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~-e~~~~-~~~~y 327 (409)
|+++|+++++..|.++.. ...++||+++|+.|.+.+..+.........+|++|+++|.+..+.++ ++... ....+
T Consensus 155 Gggttdvsvv~~g~~~~~---~~~~lGG~did~~i~~~l~~~~~~~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~ 231 (336)
T PRK13928 155 GGGTTDIAVLSLGGIVTS---SSIKVAGDKFDEAIIRYIRKKYKLLIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVT 231 (336)
T ss_pred CCCeEEEEEEEeCCEEEe---CCcCCHHHHHHHHHHHHHHHHhchhcCHHHHHHHHHHhcccccccCCcEEEEecccccC
Confidence 999999999999987765 46799999999999999875432112356799999999887544211 11000 00111
Q ss_pred EeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcC-CcEEeccCCCCccHHHHHhhh
Q 015305 328 EIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLAGIRNSF 406 (409)
Q Consensus 328 ~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~-NIvLtGG~S~ipGf~eRL~~E 406 (409)
.+|+ .+.++.++|. |+++.+- ..+.+.|.+++++++. ++ +.+.++ +|+||||+|++||+.++|+++
T Consensus 232 ~~~~--~~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~-~~--~~~~i~~~IvL~GG~s~ipgi~e~l~~~ 298 (336)
T PRK13928 232 GLPK--TITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPP-EL--SADIIDRGIIMTGGGALLHGLDKLLAEE 298 (336)
T ss_pred CCce--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCc-cc--cHhhcCCCEEEECcccchhhHHHHHHHH
Confidence 2332 3566666554 6666542 4588999999999987 77 567887 799999999999999999988
Q ss_pred hc
Q 015305 407 NK 408 (409)
Q Consensus 407 ~k 408 (409)
+.
T Consensus 299 ~~ 300 (336)
T PRK13928 299 TK 300 (336)
T ss_pred HC
Confidence 64
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.88 E-value=2.8e-22 Score=197.63 Aligned_cols=255 Identities=17% Similarity=0.200 Sum_probs=171.7
Q ss_pred eEEEeCCCCeEEEEEeCCC----CCCccc-c----cccccCC--------------ccchH-------HHHHHHHHHHHH
Q 015305 127 SVIIDGGSGYCKFGWSKYD----CPSGRT-A----TFLEFGN--------------IESPM-------YSRLRHFFATIY 176 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~----~P~~~~-~----t~~~~G~--------------~~~Pi-------~~~le~~~~~~~ 176 (409)
-+-||+||.++++--.++. .|+.+- . .++.+|+ +.+|+ ++..+.++++++
T Consensus 3 ~igIDLGT~~t~i~~~~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~~~l 82 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLRYFL 82 (326)
T ss_dssp EEEEEE-SSEEEEEETTTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHHHH
T ss_pred ceEEecCcccEEEEECCCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHHHHH
Confidence 4789999999999444433 355431 1 1223442 34676 467888888888
Q ss_pred hhcccC-CCCC-CeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEe
Q 015305 177 SRMQVK-PSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNI 249 (409)
Q Consensus 177 ~~L~v~-p~~~-pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDi 249 (409)
++..-. ...+ .++++.|.- .+..+|+.+.+.+.+ .|+..++++++|+++++++|. ...+||||
T Consensus 83 ~k~~~~~~~~~p~vvi~vP~~------~T~verrA~~~a~~~----aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 83 KKALGRRSFFRPRVVICVPSG------ITEVERRALIDAARQ----AGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHTSS-SS--EEEEEE-SS--------HHHHHHHHHHHHH----TT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHhccCCCCCCCeEEEEeCCC------CCHHHHHHHHHHHHH----cCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 775443 3334 477777753 456677776655544 899999999999999999994 35699999
Q ss_pred CCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEe
Q 015305 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEI 329 (409)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~L 329 (409)
|+++|++.-+..|.++.+ +.+.+||+++++.+.+++++++.-..+...+|+||++++++...-++. ...-..-.+
T Consensus 153 G~GtTdiavislggiv~s---~si~~gG~~~DeaI~~~ir~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~--~~~v~Grd~ 227 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIVAS---RSIRIGGDDIDEAIIRYIREKYNLLIGERTAEKIKIEIGSASPPEEEE--SMEVRGRDL 227 (326)
T ss_dssp -SS-EEEEEEETTEEEEE---EEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHH--EEEEEEEET
T ss_pred CCCeEEEEEEECCCEEEE---EEEEecCcchhHHHHHHHHHhhCcccCHHHHHHHHHhcceeeccCCCc--eEEEECccc
Confidence 999999999999999876 788999999999999999988754556789999999999886543322 111111122
Q ss_pred CCC--cEEEec-ceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCC-cEEeccCCCCccHHHHHhh
Q 015305 330 AGE--GWFTLS-KERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKT-VILTGGSACLPGLAGIRNS 405 (409)
Q Consensus 330 pdg--~~i~l~-~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~N-IvLtGG~S~ipGf~eRL~~ 405 (409)
-+| +.+.+. .+-..+.+..++ .|.+.|.++++++|+ |+ ..++++| |+||||+|+++||.++|++
T Consensus 228 ~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pP-el--~~DI~~~GI~LtGGga~l~Gl~~~i~~ 295 (326)
T PF06723_consen 228 ITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPP-EL--AADILENGIVLTGGGALLRGLDEYISE 295 (326)
T ss_dssp TTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-H-HH--HHHHHHH-EEEESGGGGSBTHHHHHHH
T ss_pred cCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCH-HH--HHHHHHCCEEEEChhhhhccHHHHHHH
Confidence 233 345554 333334333332 489999999999999 88 6788876 9999999999999999999
Q ss_pred hhc
Q 015305 406 FNK 408 (409)
Q Consensus 406 E~k 408 (409)
|++
T Consensus 296 ~~~ 298 (326)
T PF06723_consen 296 ETG 298 (326)
T ss_dssp HHS
T ss_pred HHC
Confidence 874
No 22
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=99.84 E-value=2.7e-20 Score=186.02 Aligned_cols=137 Identities=20% Similarity=0.313 Sum_probs=116.3
Q ss_pred HHHHHHHHHH-hhcccCCC---CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCc
Q 015305 167 RLRHFFATIY-SRMQVKPS---TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT 242 (409)
Q Consensus 167 ~le~~~~~~~-~~L~v~p~---~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~ 242 (409)
.+..+|++.+ ++|++.++ .+.+|++.|-. ..|..+.|.+.-+|+|+++.++.++.+++++.||+|.+
T Consensus 205 dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~---------f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 205 DLTAILDYALLEKLHIPHKKLFQYHAVLVVPDT---------FDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred HHHHHHHHHHHHhcCCChhHhcceeEEEEecch---------hhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 4567787655 67999764 57788887753 46777777777777889999999999999999999999
Q ss_pred ceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHhhccccc
Q 015305 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG--------SLYTVRTLKEKLCYVAA 313 (409)
Q Consensus 243 sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~--------~~~~ve~iKe~~c~v~~ 313 (409)
+++|||||++.|+|++|-||..+++ +-.++++||.++++.+..+|.+.+.... ++-+++++||+.|....
T Consensus 276 s~CVVdiGAQkTsIaCVEdGvs~~n-tri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~ 353 (618)
T KOG0797|consen 276 SACVVDIGAQKTSIACVEDGVSLPN-TRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRA 353 (618)
T ss_pred ceeEEEccCcceeEEEeecCccccC-ceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccH
Confidence 9999999999999999999999998 8899999999999999999998765432 24689999999998764
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.73 E-value=4.6e-17 Score=156.55 Aligned_cols=256 Identities=20% Similarity=0.224 Sum_probs=182.4
Q ss_pred eEEEeCCCCeEEEEEeCCC----CCCccc-------ccccccCC--------------ccchHH-------HHHHHHHHH
Q 015305 127 SVIIDGGSGYCKFGWSKYD----CPSGRT-------ATFLEFGN--------------IESPMY-------SRLRHFFAT 174 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~----~P~~~~-------~t~~~~G~--------------~~~Pi~-------~~le~~~~~ 174 (409)
.+=||+|+.+|++=--|.. .|+++- +.++.+|+ ..+||. +..+.++++
T Consensus 8 diGIDLGTanTlV~~k~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ml~~ 87 (342)
T COG1077 8 DIGIDLGTANTLVYVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELMLKY 87 (342)
T ss_pred cceeeecccceEEEEcCceEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHHHHH
Confidence 5889999999998544332 465431 11223332 246773 456666666
Q ss_pred HHhhcccC---CCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC----c-ceEE
Q 015305 175 IYSRMQVK---PSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR----T-SGIV 246 (409)
Q Consensus 175 ~~~~L~v~---p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~----~-sglV 246 (409)
|.++..-+ +..-.++++.|.. .+.-+|+.+.|...+ -+...++++++|.+|++++|. . ..+|
T Consensus 88 fik~~~~~~~~~~~prI~i~vP~g------~T~VErrAi~ea~~~----aGa~~V~lieEp~aAAIGaglpi~ep~G~mv 157 (342)
T COG1077 88 FIKKVHKNGSSFPKPRIVICVPSG------ITDVERRAIKEAAES----AGAREVYLIEEPMAAAIGAGLPIMEPTGSMV 157 (342)
T ss_pred HHHHhccCCCCCCCCcEEEEecCC------ccHHHHHHHHHHHHh----ccCceEEEeccHHHHHhcCCCcccCCCCCEE
Confidence 66654322 2233467777754 357788887777666 799999999999999999994 4 4799
Q ss_pred EEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhc----c
Q 015305 247 VNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSK----D 322 (409)
Q Consensus 247 VDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~----~ 322 (409)
||||.++|.|..|..|-++.. ....+||+.+++.+..++++++.-......+|+||.+.+++..+...+..+ .
T Consensus 158 vDIGgGTTevaVISlggiv~~---~Sirv~GD~~De~Ii~yvr~~~nl~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~G 234 (342)
T COG1077 158 VDIGGGTTEVAVISLGGIVSS---SSVRVGGDKMDEAIIVYVRKKYNLLIGERTAEKIKIEIGSAYPEEEDEELEMEVRG 234 (342)
T ss_pred EEeCCCceeEEEEEecCEEEE---eeEEEecchhhHHHHHHHHHHhCeeecHHHHHHHHHHhcccccccCCccceeeEEe
Confidence 999999999999999888865 668899999999999999988665556788999999999987643322111 1
Q ss_pred ccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCC-cEEeccCCCCccHHH
Q 015305 323 TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKT-VILTGGSACLPGLAG 401 (409)
Q Consensus 323 ~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~N-IvLtGG~S~ipGf~e 401 (409)
++....+| +.+.+..+ .+.|.|=.| -.+|.+.|...+++||+ |+ -.+.+++ |+++||+|++.||.+
T Consensus 235 rdl~~GlP--k~i~i~s~--ev~eal~~~------v~~Iveair~~Le~tpP-eL--~~DI~ergivltGGGalLrglD~ 301 (342)
T COG1077 235 RDLVTGLP--KTITINSE--EIAEALEEP------LNGIVEAIRLVLEKTPP-EL--AADIVERGIVLTGGGALLRGLDR 301 (342)
T ss_pred eecccCCC--eeEEEcHH--HHHHHHHHH------HHHHHHHHHHHHhhCCc-hh--cccHhhCceEEecchHHhcCchH
Confidence 12222344 44555433 122322222 13588999999999999 98 5789999 999999999999999
Q ss_pred HHhhhhc
Q 015305 402 IRNSFNK 408 (409)
Q Consensus 402 RL~~E~k 408 (409)
.|.+|.+
T Consensus 302 ~i~~et~ 308 (342)
T COG1077 302 LLSEETG 308 (342)
T ss_pred hHHhccC
Confidence 9998853
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.47 E-value=2e-12 Score=123.08 Aligned_cols=210 Identities=14% Similarity=0.159 Sum_probs=134.6
Q ss_pred EeCCCCeEEEEEe-CCCCCCccccc---ccccCCccchHHHHHHHHHHHHH----hhcccCCCCCCeEEEecCCCCCCCc
Q 015305 130 IDGGSGYCKFGWS-KYDCPSGRTAT---FLEFGNIESPMYSRLRHFFATIY----SRMQVKPSTQPIVVSIPICHYDDTE 201 (409)
Q Consensus 130 ID~GS~~iKaGfa-ge~~P~~~~~t---~~~~G~~~~Pi~~~le~~~~~~~----~~L~v~p~~~pVll~ep~~~~~~~~ 201 (409)
||+||.++|+=-. ..+.+-.+.+. .+.-|.+.. .+..++++.++. ++++. .-..++++.|....
T Consensus 2 ~dig~~~ik~v~~~~~~~~~~~~~~~~~~~~~g~I~d--~~~~~~~l~~l~~~a~~~~g~--~~~~vvisVP~~~~---- 73 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQPVAGVMQFADVVRDGIVVD--FLGAVEIVRRLKDTLEQKLGI--ELTHAATAIPPGTI---- 73 (239)
T ss_pred CCcccceEEEEEEecCCCEEEEEecccccccCCeEEE--hHHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCC----
Confidence 6999999997543 22222111111 111222221 134445554444 34433 23478899886542
Q ss_pred chHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHH
Q 015305 202 NAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLT 281 (409)
Q Consensus 202 ~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt 281 (409)
...|+.+.+.+-. .|+.-+.+.+++++++.+++....+|||+|++.|++.-+.+|.++.. ...++||+++|
T Consensus 74 --~~~r~a~~~a~~~----aGl~~~~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~~---~~~~~GG~~it 144 (239)
T TIGR02529 74 --EGDPKVIVNVIES----AGIEVLHVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIYS---ADEPTGGTHMS 144 (239)
T ss_pred --cccHHHHHHHHHH----cCCceEEEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEEE---EeeecchHHHH
Confidence 3445544332222 79999999999999999988878899999999999998899987754 56799999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCCCcEEEecceeeccccccccCCcCCccCCch
Q 015305 282 GYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGL 361 (409)
Q Consensus 282 ~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL 361 (409)
+.+.+.+.- +.+.+|.+|..... .++. +.+.+.+ ...+
T Consensus 145 ~~Ia~~~~i------~~~~AE~~K~~~~~-----~~~~----------------------~~~i~~~---------~~~i 182 (239)
T TIGR02529 145 LVLAGAYGI------SFEEAEEYKRGHKD-----EEEI----------------------FPVVKPV---------YQKM 182 (239)
T ss_pred HHHHHHhCC------CHHHHHHHHHhcCC-----HHHH----------------------HHHHHHH---------HHHH
Confidence 988766541 35788888876431 1110 0011111 1125
Q ss_pred HHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 362 DQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 362 ~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
.+.|.+++++.++ +.|+||||+|++||+.++|+++++
T Consensus 183 ~~~i~~~l~~~~~----------~~v~LtGG~a~ipgl~e~l~~~lg 219 (239)
T TIGR02529 183 ASIVKRHIEGQGV----------KDLYLVGGACSFSGFADVFEKQLG 219 (239)
T ss_pred HHHHHHHHHhCCC----------CEEEEECchhcchhHHHHHHHHhC
Confidence 5556666654443 369999999999999999998764
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.38 E-value=2.7e-11 Score=117.21 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=131.4
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCc--c--cc-cccccCCccchHHHH----HHHHHHHHHhhcccCCCCCCeEEEecCCC
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSG--R--TA-TFLEFGNIESPMYSR----LRHFFATIYSRMQVKPSTQPIVVSIPICH 196 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~--~--~~-t~~~~G~~~~Pi~~~----le~~~~~~~~~L~v~p~~~pVll~ep~~~ 196 (409)
-.++||+||..+|+=-+ +..+.. + .+ ..+..|.+.. .+. ++++.+..-+.++++ -..++++.|...
T Consensus 25 ~~~~iDiGSssi~~vv~-~~~~~~~~~~~~~~~~vr~G~i~d--i~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~ 99 (267)
T PRK15080 25 LKVGVDLGTANIVLAVL-DEDGQPVAGALEWADVVRDGIVVD--FIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGT 99 (267)
T ss_pred EEEEEEccCceEEEEEE-cCCCCEEEEEeccccccCCCEEee--HHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCC
Confidence 45899999999997654 333321 0 01 1122333221 233 333333333344543 235666666532
Q ss_pred CCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCcceEEEEeCCceeEEEEEecCeEeecccEEEEccc
Q 015305 197 YDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG 276 (409)
Q Consensus 197 ~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iG 276 (409)
. ..+|..+.+.+ + +.|..-..++.++.+++.+.+...++|||||+++|+++-+.+|.+... ...++|
T Consensus 100 ~------~~~~~~~~~~~-~---~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~---~~~~~G 166 (267)
T PRK15080 100 S------EGDPRAIINVV-E---SAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS---ADEPTG 166 (267)
T ss_pred C------chhHHHHHHHH-H---HcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE---ecccCc
Confidence 1 23344433222 2 278888889999999999888777899999999999998899988754 567999
Q ss_pred hhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCCCcEEEecceeeccccccccCCcCCc
Q 015305 277 ALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356 (409)
Q Consensus 277 G~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~ 356 (409)
|+++|+.+.+.+.- +.+.+|.+|..... .+++ ..+-+.++
T Consensus 167 G~~it~~Ia~~l~i------~~~eAE~lK~~~~~-----~~~~----------------------~~ii~~~~------- 206 (267)
T PRK15080 167 GTHMSLVLAGAYGI------SFEEAEQYKRDPKH-----HKEI----------------------FPVVKPVV------- 206 (267)
T ss_pred hHHHHHHHHHHhCC------CHHHHHHHHhccCC-----HHHH----------------------HHHHHHHH-------
Confidence 99999999876642 35778888865320 0000 00111111
Q ss_pred cCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 357 ~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
..+.+.|.+.+++.+ .+.|+||||+|++||+.+.+++.+.
T Consensus 207 --~~i~~~i~~~l~~~~----------~~~IvLtGG~s~lpgl~e~l~~~lg 246 (267)
T PRK15080 207 --EKMASIVARHIEGQD----------VEDIYLVGGTCCLPGFEEVFEKQTG 246 (267)
T ss_pred --HHHHHHHHHHHhcCC----------CCEEEEECCcccchhHHHHHHHHhC
Confidence 113344444444322 2579999999999999999988764
No 26
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.18 E-value=1.6e-11 Score=86.88 Aligned_cols=46 Identities=26% Similarity=0.689 Sum_probs=40.3
Q ss_pred cCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhh
Q 015305 39 DQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (409)
Q Consensus 39 ~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (409)
+.||.|++.+|+++|+|+|+++++.|||.|+.++.|+.||+.+..|
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 5799999999999999999999999999999999999999987543
No 27
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.15 E-value=2.1e-09 Score=116.48 Aligned_cols=187 Identities=17% Similarity=0.196 Sum_probs=120.1
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~ 260 (409)
..++++.|.... ...|+.+++.. +. .|++-+.++++|.+|++++|. ..-+|+|+|+++++|+.+-
T Consensus 175 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 175 KQAVITVPAYFN------DSQRQATKDAG-KI---AGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEE
Confidence 468999887653 45666655433 33 899999999999999999984 3579999999999998663
Q ss_pred --cCeEeecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhccccc
Q 015305 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (409)
Q Consensus 261 --dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~~~~ 325 (409)
+|..--........+||.++|+.|.+.+..+ +.+... ...+|.+|+.++.-. ..
T Consensus 245 ~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~-----------~~ 313 (663)
T PTZ00400 245 ILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT-----------QT 313 (663)
T ss_pred ecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------ce
Confidence 4533211022345799999999998877653 222211 124566666654211 11
Q ss_pred eEEeC----C--C---cEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCC
Q 015305 326 SLEIA----G--E---GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (409)
Q Consensus 326 ~y~Lp----d--g---~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (409)
.+.+| | | -.+.++.+.| ...+.+|. .+.+.|.+++++... . ..-...|+|+||+|.
T Consensus 314 ~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssr 379 (663)
T PTZ00400 314 EINLPFITADQSGPKHLQIKLSRAKLEELTHDLLK---------KTIEPCEKCIKDAGV-K----KDELNDVILVGGMTR 379 (663)
T ss_pred EEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HHHCcEEEEECCccC
Confidence 12221 1 1 1345555544 23333332 356677777777654 2 344688999999999
Q ss_pred CccHHHHHhhhh
Q 015305 396 LPGLAGIRNSFN 407 (409)
Q Consensus 396 ipGf~eRL~~E~ 407 (409)
+|++.++|++.+
T Consensus 380 iP~v~~~l~~~f 391 (663)
T PTZ00400 380 MPKVSETVKKIF 391 (663)
T ss_pred ChHHHHHHHHHh
Confidence 999999998754
No 28
>CHL00094 dnaK heat shock protein 70
Probab=99.13 E-value=4.4e-09 Score=113.29 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=116.5
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~ 260 (409)
..++++.|.... ...|+.+.+. .+. .|+.-+.++++|++|++++|. ..-+|+|+|+++++|+.+.
T Consensus 136 ~~~VItVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 136 TQAVITVPAYFN------DSQRQATKDA-GKI---AGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred CeEEEEECCCCC------HHHHHHHHHH-HHH---cCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEE
Confidence 458888887542 4556655443 344 789999999999999999874 3569999999999998775
Q ss_pred cCe-Ee--ecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhcccc
Q 015305 261 HGK-VM--RKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQ 324 (409)
Q Consensus 261 dG~-~l--~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~~~ 324 (409)
.+. .+ .. ......+||+++++.|.+.+.++ +..... ...+|.+|+.++... .
T Consensus 206 ~~~~~~~vla-~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~-----------~ 273 (621)
T CHL00094 206 VGDGVFEVLS-TSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT-----------Q 273 (621)
T ss_pred EcCCEEEEEE-EecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------c
Confidence 432 11 11 12345899999999988776543 222211 134666777654211 1
Q ss_pred ceEEeC------CC-c--EEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCC
Q 015305 325 ASLEIA------GE-G--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (409)
Q Consensus 325 ~~y~Lp------dg-~--~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (409)
..+.+| +| . ...|..++| ...+.+++ .+.+.|.+++++... . ..-...|+|+||+|
T Consensus 274 ~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGss 339 (621)
T CHL00094 274 TEINLPFITATQTGPKHIEKTLTRAKFEELCSDLIN---------RCRIPVENALKDAKL-D----KSDIDEVVLVGGST 339 (621)
T ss_pred eEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCcEEEEECCcc
Confidence 112222 11 1 233444444 22233332 245556667766543 2 33457899999999
Q ss_pred CCccHHHHHhhhh
Q 015305 395 CLPGLAGIRNSFN 407 (409)
Q Consensus 395 ~ipGf~eRL~~E~ 407 (409)
.+|++.+.|++.+
T Consensus 340 riP~v~~~l~~~f 352 (621)
T CHL00094 340 RIPAIQELVKKLL 352 (621)
T ss_pred CChHHHHHHHHHh
Confidence 9999999998754
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.12 E-value=4.4e-09 Score=113.44 Aligned_cols=186 Identities=18% Similarity=0.198 Sum_probs=117.3
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~ 260 (409)
..++++.|.... ...|+.+++.. +. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+.+-
T Consensus 134 ~~~VItVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 134 TEAVITVPAYFN------DAQRQATKDAG-KI---AGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEE
Confidence 358899887653 45666654433 33 899999999999999998873 5589999999999998764
Q ss_pred cC--eE-eecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhcccc
Q 015305 261 HG--KV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQ 324 (409)
Q Consensus 261 dG--~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~~~ 324 (409)
-+ .. +.. ......+||.++++.|.+++.++ +..+.. ...++.+|+.++.-. .
T Consensus 204 ~~~~~~~vla-~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~-----------~ 271 (627)
T PRK00290 204 IGDGVFEVLS-TNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ-----------Q 271 (627)
T ss_pred EeCCeEEEEE-ecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------e
Confidence 33 11 111 12235799999999988776543 222211 124566666654211 1
Q ss_pred ceEEeC----C--C---cEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCC
Q 015305 325 ASLEIA----G--E---GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (409)
Q Consensus 325 ~~y~Lp----d--g---~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (409)
..+.+| | | -.+.|+.+.| ...+.++. .+.+.|.+++++... . ..-...|+|+||+|
T Consensus 272 ~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~l~~a~~-~----~~~id~ViLvGGss 337 (627)
T PRK00290 272 TEINLPFITADASGPKHLEIKLTRAKFEELTEDLVE---------RTIEPCKQALKDAGL-S----VSDIDEVILVGGST 337 (627)
T ss_pred EEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCcEEEEECCcC
Confidence 112221 1 1 1244555544 23333332 356677777776654 2 23357899999999
Q ss_pred CCccHHHHHhhhh
Q 015305 395 CLPGLAGIRNSFN 407 (409)
Q Consensus 395 ~ipGf~eRL~~E~ 407 (409)
.+|++.++|++.+
T Consensus 338 riP~v~~~l~~~f 350 (627)
T PRK00290 338 RMPAVQELVKEFF 350 (627)
T ss_pred CChHHHHHHHHHh
Confidence 9999999998754
No 30
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.11 E-value=6.4e-09 Score=112.59 Aligned_cols=187 Identities=22% Similarity=0.245 Sum_probs=119.6
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-------cceEEEEeCCceeEEEE
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-------TSGIVVNIGFQVTSVVP 258 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-------~sglVVDiG~~~T~v~P 258 (409)
..++|+.|.... ...|+.+++ ..+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-
T Consensus 141 ~~~VItVPa~f~------~~qR~a~~~-Aa~~---AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv 210 (653)
T PTZ00009 141 KDAVVTVPAYFN------DSQRQATKD-AGTI---AGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSL 210 (653)
T ss_pred ceeEEEeCCCCC------HHHHHHHHH-HHHH---cCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEE
Confidence 468999887653 455655444 3444 899999999999999998863 35799999999999876
Q ss_pred Ee--cCeEeecccEEEEccchhHHHHHHHHHHHhcC------CCCCc--------HHHHHHHHHhhcccccchHHhhhcc
Q 015305 259 IL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN------INFGS--------LYTVRTLKEKLCYVAADYKAELSKD 322 (409)
Q Consensus 259 V~--dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~------~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~ 322 (409)
+- +|..--........+||.+++..|.+.+.++. ..+.. ...+|.+|+.++..
T Consensus 211 ~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------- 279 (653)
T PTZ00009 211 LTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------- 279 (653)
T ss_pred EEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC-----------
Confidence 63 44322110112357999999999887765431 22211 12456666665421
Q ss_pred ccceEEeC---CC--cEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCC
Q 015305 323 TQASLEIA---GE--GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL 396 (409)
Q Consensus 323 ~~~~y~Lp---dg--~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~i 396 (409)
....+.++ ++ -.+.|..+.| ...+.+|+ .+.+.|.+++.++.. + ..-.+.|+|+||+|.+
T Consensus 280 ~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssri 345 (653)
T PTZ00009 280 TQATIEIDSLFEGIDYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDAGM-D----KRSVHEVVLVGGSTRI 345 (653)
T ss_pred ceEEEEEEeccCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HHHCcEEEEECCCCCC
Confidence 11122322 23 2345666555 23444443 255667777777664 3 2345789999999999
Q ss_pred ccHHHHHhhhh
Q 015305 397 PGLAGIRNSFN 407 (409)
Q Consensus 397 pGf~eRL~~E~ 407 (409)
|.+.++|++.+
T Consensus 346 P~v~~~i~~~f 356 (653)
T PTZ00009 346 PKVQSLIKDFF 356 (653)
T ss_pred hhHHHHHHHHh
Confidence 99999998754
No 31
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.10 E-value=5.1e-09 Score=113.58 Aligned_cols=186 Identities=19% Similarity=0.233 Sum_probs=116.9
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~ 260 (409)
..++|+.|.... ...|+.+++. .+. .|+.-+.++++|++|++++|. ..-+|+|+|+++++|+.+-
T Consensus 173 ~~~VITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 173 TKAVITVPAYFN------DSQRTATKDA-GRI---AGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred CeEEEEECCCCC------HHHHHHHHHH-HHH---CCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 468999887653 4556655443 344 899999999999999998874 3569999999999998763
Q ss_pred cCe-Ee--ecccEEEEccchhHHHHHHHHHHHhc-----CCCCC-c-------HHHHHHHHHhhcccccchHHhhhcccc
Q 015305 261 HGK-VM--RKVGVEVMGLGALKLTGYLRLLMQQN-----NINFG-S-------LYTVRTLKEKLCYVAADYKAELSKDTQ 324 (409)
Q Consensus 261 dG~-~l--~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~-~-------~~~ve~iKe~~c~v~~d~~~e~~~~~~ 324 (409)
-+. .+ .. ......+||.++++.|.+++.++ +.+.. + ...+|..|+.+.... .
T Consensus 243 ~~~~~~eVla-~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~-----------~ 310 (673)
T PLN03184 243 VGDGVFEVLS-TSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT-----------Q 310 (673)
T ss_pred ecCCEEEEEE-ecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------c
Confidence 321 11 11 11235899999999998876653 11111 1 124566666554211 1
Q ss_pred ceEEeC------CC-c--EEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCC
Q 015305 325 ASLEIA------GE-G--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (409)
Q Consensus 325 ~~y~Lp------dg-~--~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (409)
..+.+| +| . .+.|..+.| ...+.+++ .+.+.|.+++++... +. .=...|+|+||+|
T Consensus 311 ~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------r~~~~i~~~L~~a~~-~~----~dId~ViLvGGss 376 (673)
T PLN03184 311 TSISLPFITATADGPKHIDTTLTRAKFEELCSDLLD---------RCKTPVENALRDAKL-SF----KDIDEVILVGGST 376 (673)
T ss_pred ceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-Ch----hHccEEEEECCcc
Confidence 112222 11 2 234555544 23333332 255667777776654 32 3348899999999
Q ss_pred CCccHHHHHhhhh
Q 015305 395 CLPGLAGIRNSFN 407 (409)
Q Consensus 395 ~ipGf~eRL~~E~ 407 (409)
.+|++.++|++.+
T Consensus 377 riP~V~~~i~~~f 389 (673)
T PLN03184 377 RIPAVQELVKKLT 389 (673)
T ss_pred ccHHHHHHHHHHh
Confidence 9999999998754
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.10 E-value=5.1e-09 Score=112.29 Aligned_cols=186 Identities=18% Similarity=0.235 Sum_probs=116.8
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC------cceEEEEeCCceeEEEEE
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPI 259 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~------~sglVVDiG~~~T~v~PV 259 (409)
..++++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++++.+
T Consensus 131 ~~~VItVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~ 200 (595)
T TIGR02350 131 TEAVITVPAYFN------DAQRQATKDA-GKI---AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSIL 200 (595)
T ss_pred CeEEEEECCCCC------HHHHHHHHHH-HHH---cCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEE
Confidence 358899887653 4566665543 333 799999999999999988763 356999999999999876
Q ss_pred e--cCeE-eecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhccc
Q 015305 260 L--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDT 323 (409)
Q Consensus 260 ~--dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~~ 323 (409)
- +|.. +.. ......+||.++|+.|.+++..+ +..+.. ...+|.+|+.++...
T Consensus 201 ~~~~~~~~v~~-~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~----------- 268 (595)
T TIGR02350 201 EIGDGVFEVLS-TAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL----------- 268 (595)
T ss_pred EecCCeEEEEE-ecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------
Confidence 3 2322 111 12235799999999998776543 222211 124566676654211
Q ss_pred cceEEeC----C--C---cEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccC
Q 015305 324 QASLEIA----G--E---GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGS 393 (409)
Q Consensus 324 ~~~y~Lp----d--g---~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~ 393 (409)
...+.+| | | ..+.|+.+.| ...+.+++ .+.++|.+++++... . ..-...|+|+||+
T Consensus 269 ~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~---------~~~~~i~~~l~~a~~-~----~~~i~~V~LvGGs 334 (595)
T TIGR02350 269 STEINLPFITADASGPKHLEMTLTRAKFEELTADLVE---------RTKEPVRQALKDAGL-S----ASDIDEVILVGGS 334 (595)
T ss_pred ceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HhHCcEEEEECCc
Confidence 1111221 1 1 2345555544 23333332 366677777776654 2 3345789999999
Q ss_pred CCCccHHHHHhhhh
Q 015305 394 ACLPGLAGIRNSFN 407 (409)
Q Consensus 394 S~ipGf~eRL~~E~ 407 (409)
|.+|++.+.+++.+
T Consensus 335 sriP~v~~~i~~~f 348 (595)
T TIGR02350 335 TRIPAVQELVKDFF 348 (595)
T ss_pred ccChHHHHHHHHHh
Confidence 99999999998754
No 33
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.10 E-value=6.4e-09 Score=111.53 Aligned_cols=187 Identities=18% Similarity=0.148 Sum_probs=117.2
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~ 260 (409)
..++++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+.+-
T Consensus 130 ~~~VItVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 130 VGAVITVPAYFD------DAQRQATKDA-ARL---AGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred ceEEEEECCCCC------HHHHHHHHHH-HHH---cCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEE
Confidence 468899887653 4566655443 344 899999999999999988863 4569999999999998663
Q ss_pred --cCeE-eecccEEEEccchhHHHHHHHHHHHhc-CCCCC-cH-------HHHHHHHHhhcccccchHHhhhccccceEE
Q 015305 261 --HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-NINFG-SL-------YTVRTLKEKLCYVAADYKAELSKDTQASLE 328 (409)
Q Consensus 261 --dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~-~~~~~-~~-------~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~ 328 (409)
+|.. +.. ......+||.++++.|.+.+.++ +.... +. ..+|.+|+.++.-. .....++
T Consensus 200 ~~~~~~~vla-~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~---------~~~i~i~ 269 (599)
T TIGR01991 200 LTKGVFEVLA-TGGDSALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKEALTDAE---------SVEVDFT 269 (599)
T ss_pred EcCCeEEEEE-EcCCCCCCHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCCc---------eEEEEEE
Confidence 3422 111 12235899999999999988654 22211 11 23455555443110 0011122
Q ss_pred eCCCc--EEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhh
Q 015305 329 IAGEG--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNS 405 (409)
Q Consensus 329 Lpdg~--~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~ 405 (409)
.+ |. .+.|+.+.| ...+.+++ .+.+.|.+++++... . ..-...|+|+||+|.+|++.++|++
T Consensus 270 ~~-g~~~~~~itr~efe~l~~~ll~---------~i~~~i~~~L~~a~~-~----~~~id~ViLvGGssriP~V~~~l~~ 334 (599)
T TIGR01991 270 LD-GKDFKGKLTRDEFEALIQPLVQ---------KTLSICRRALRDAGL-S----VEEIKGVVLVGGSTRMPLVRRAVAE 334 (599)
T ss_pred EC-CcEEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCCEEEEECCcCCChHHHHHHHH
Confidence 22 32 344555544 23333332 356677777776654 2 2345789999999999999999987
Q ss_pred hh
Q 015305 406 FN 407 (409)
Q Consensus 406 E~ 407 (409)
..
T Consensus 335 ~f 336 (599)
T TIGR01991 335 LF 336 (599)
T ss_pred Hh
Confidence 54
No 34
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.10 E-value=9.6e-10 Score=111.19 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHH
Q 015305 208 RQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTG 282 (409)
Q Consensus 208 ~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~ 282 (409)
++..+.+.+.+-..|..-+.+..+++++++++.. ...+|||+|+++|+++.+.+|..... ..+++||+++|+
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~---~~i~~GG~~it~ 233 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYT---KVIPIGGNHITK 233 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEE---eeecchHHHHHH
Confidence 3444555554333788888889999999888652 34699999999999999999987653 678999999999
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCC---CcEEEecceee-ccccccccCCcCCccC
Q 015305 283 YLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG---EGWFTLSKERF-QTGEILFQPRMADVRT 358 (409)
Q Consensus 283 ~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpd---g~~i~l~~erf-~~~E~LF~P~~~g~~~ 358 (409)
.+.+.+.. +.+.+|++|.+++....+.. .....++++. +....++.+.+ .+.+..+
T Consensus 234 ~i~~~l~~------~~~~AE~lK~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~--------- 293 (371)
T TIGR01174 234 DIAKALRT------PLEEAERIKIKYGCASIPLE-----GPDENIEIPSVGERPPRSLSRKELAEIIEARA--------- 293 (371)
T ss_pred HHHHHhCC------CHHHHHHHHHHeeEecccCC-----CCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH---------
Confidence 98875542 36789999999887542210 0111233331 12223322211 1111111
Q ss_pred CchHHHHH-HHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 359 MGLDQAVA-LCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 359 ~gL~~~I~-~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
..+.+.|. +.+++.+. + ..+-+.|+||||+|++||+.+++++.++
T Consensus 294 ~ei~~~i~~~~L~~~~~-~----~~i~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 294 EEILEIVKQKELRKSGF-K----EELNGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred HHHHHHHHHHHHHhcCC-c----ccCCCEEEEeChHHcccCHHHHHHHHhC
Confidence 12555554 66665543 1 2333339999999999999999988764
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.09 E-value=4.8e-09 Score=113.54 Aligned_cols=186 Identities=18% Similarity=0.227 Sum_probs=117.1
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC------cceEEEEeCCceeEEEEE
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPI 259 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~------~sglVVDiG~~~T~v~PV 259 (409)
..++|+.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. ..-+|+|+|+++++|+-+
T Consensus 134 ~~~VITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~ 203 (653)
T PRK13411 134 TQAVITVPAYFT------DAQRQATKDA-GTI---AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSIL 203 (653)
T ss_pred ceEEEEECCCCC------cHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEE
Confidence 458899887653 4567665543 344 899999999999999999874 346999999999998865
Q ss_pred e--cCeE-eecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhccc
Q 015305 260 L--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDT 323 (409)
Q Consensus 260 ~--dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~~ 323 (409)
- +|.. +.. ......+||.++++.|.+.+.++ +..+.. ...+|..|+.++.-.
T Consensus 204 ~~~~~~~~V~a-t~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~----------- 271 (653)
T PRK13411 204 QLGDGVFEVKA-TAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML----------- 271 (653)
T ss_pred EEeCCEEEEEE-EecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------
Confidence 3 2322 111 12234799999999888776543 222211 124556666554211
Q ss_pred cceEEeC----C---C--cEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccC
Q 015305 324 QASLEIA----G---E--GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGS 393 (409)
Q Consensus 324 ~~~y~Lp----d---g--~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~ 393 (409)
...+.+| | + -.+.|+.+.| ...+.+|+ .+.+.|.+++++... ..+-.+.|+|+||+
T Consensus 272 ~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~-----~~~~id~ViLvGGs 337 (653)
T PRK13411 272 TTSINLPFITADETGPKHLEMELTRAKFEELTKDLVE---------ATIEPMQQALKDAGL-----KPEDIDRVILVGGS 337 (653)
T ss_pred ceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-----CHHHCcEEEEECCC
Confidence 1112221 1 1 2345555544 22333332 356677777776654 23445789999999
Q ss_pred CCCccHHHHHhhhh
Q 015305 394 ACLPGLAGIRNSFN 407 (409)
Q Consensus 394 S~ipGf~eRL~~E~ 407 (409)
|.+|++.++|++..
T Consensus 338 sriP~v~~~l~~~f 351 (653)
T PRK13411 338 TRIPAVQEAIQKFF 351 (653)
T ss_pred CCcchHHHHHHHHc
Confidence 99999999998754
No 36
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.08 E-value=1.2e-08 Score=110.27 Aligned_cols=187 Identities=18% Similarity=0.180 Sum_probs=118.9
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~ 260 (409)
..++++.|.... ...|+.+++ ..+. .|+.-+.++++|++|++++|. ..-+|+|+|+++++|+-+-
T Consensus 161 ~~aVITVPayF~------~~qR~at~~-Aa~~---AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 161 SNAVVTCPAYFN------DAQRQATKD-AGTI---AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred ceEEEEECCCCC------hHHHHHHHH-HHHH---cCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 358888887542 355655443 3444 899989999999999999873 4569999999999998764
Q ss_pred --cCeEeecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhccccc
Q 015305 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (409)
Q Consensus 261 --dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~~~~ 325 (409)
+|..--..+.....+||.++++.|.+.+.++ +.+... ...+|..|+.++.... .
T Consensus 231 ~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~-----------~ 299 (657)
T PTZ00186 231 IAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME-----------T 299 (657)
T ss_pred EeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc-----------e
Confidence 5543221012345899999999888766542 222211 1346666766543211 1
Q ss_pred eEEeC------CC---cEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCC
Q 015305 326 SLEIA------GE---GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (409)
Q Consensus 326 ~y~Lp------dg---~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (409)
...+| || -.+.|+.+.| ...+.||+ .+.+.+.+++.+... + ..-...|+|+||+|.
T Consensus 300 ~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~---------r~~~~v~~~L~~a~~-~----~~dId~VvLVGGssr 365 (657)
T PTZ00186 300 EVNLPFITANADGAQHIQMHISRSKFEGITQRLIE---------RSIAPCKQCMKDAGV-E----LKEINDVVLVGGMTR 365 (657)
T ss_pred EEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCCEEEEECCccc
Confidence 11221 12 2355666555 33344443 245566777766554 2 234478999999999
Q ss_pred CccHHHHHhhhh
Q 015305 396 LPGLAGIRNSFN 407 (409)
Q Consensus 396 ipGf~eRL~~E~ 407 (409)
+|++.+.+++..
T Consensus 366 iP~V~~~l~~~f 377 (657)
T PTZ00186 366 MPKVVEEVKKFF 377 (657)
T ss_pred ChHHHHHHHHHh
Confidence 999999998754
No 37
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.05 E-value=1.4e-08 Score=108.67 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=115.9
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~ 260 (409)
..++++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. ..-+|+|+|+++++|+-+-
T Consensus 142 ~~aVITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 142 TKAVITVPAHFN------DAARGEVMLA-AKI---AGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred ceEEEEECCCCC------HHHHHHHHHH-HHH---cCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEE
Confidence 468899887653 4556655443 344 899999999999999999874 3459999999999988663
Q ss_pred --cCeEe-ecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhhhccccceEEeCCCcE
Q 015305 261 --HGKVM-RKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGW 334 (409)
Q Consensus 261 --dG~~l-~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg~~ 334 (409)
+|..- .. ......+||.++++.|.+.+..+...-. ....++..|+.+..-. .+. ...
T Consensus 212 ~~~~~~~V~a-t~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~-------------~~~---~~~ 274 (595)
T PRK01433 212 IQEGIFQVIA-TNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD-------------SFN---NDN 274 (595)
T ss_pred EeCCeEEEEE-EcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc-------------ccc---cce
Confidence 44221 11 1123469999999999998876532111 1234666666553211 111 125
Q ss_pred EEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhh
Q 015305 335 FTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFN 407 (409)
Q Consensus 335 i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~ 407 (409)
+.|+.+.| ...+.+|+ .+.+.|.+++++....| .+.|+|+||+|.+|.+.++|++..
T Consensus 275 ~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~~~-------Id~ViLvGGssriP~v~~~l~~~f 332 (595)
T PRK01433 275 ISINKQTLEQLILPLVE---------RTINIAQECLEQAGNPN-------IDGVILVGGATRIPLIKDELYKAF 332 (595)
T ss_pred EEEcHHHHHHHHHHHHH---------HHHHHHHHHHhhcCccc-------CcEEEEECCcccChhHHHHHHHHh
Confidence 66666555 23333433 24556666666554212 377999999999999999998754
No 38
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.05 E-value=1.9e-08 Score=109.06 Aligned_cols=185 Identities=16% Similarity=0.198 Sum_probs=115.2
Q ss_pred CeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe-
Q 015305 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL- 260 (409)
Q Consensus 187 pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~- 260 (409)
.++|+.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+.+-
T Consensus 137 ~~VITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~ 206 (668)
T PRK13410 137 GAVITVPAYFN------DSQRQATRDA-GRI---AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEV 206 (668)
T ss_pred eEEEEECCCCC------HHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEE
Confidence 58899887653 4566655443 344 899999999999999999874 4579999999999998764
Q ss_pred -cCeE-eecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhccccc
Q 015305 261 -HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (409)
Q Consensus 261 -dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~~~~ 325 (409)
+|.. +.. +.....+||.++++.|.+.+..+ +..+.. ...++.+|+.+.... ..
T Consensus 207 ~~g~~~V~a-t~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~-----------~~ 274 (668)
T PRK13410 207 GNGVFEVKA-TSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS-----------VT 274 (668)
T ss_pred cCCeEEEEE-eecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------ce
Confidence 3322 111 22335799999999888776543 222211 123455665543211 11
Q ss_pred eEEeC------CC---cEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCC
Q 015305 326 SLEIA------GE---GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (409)
Q Consensus 326 ~y~Lp------dg---~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (409)
.+.+| +| -.+.+..+.| ...+.++. .+.+.|.+++.+... ...-...|+|+||+|.
T Consensus 275 ~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~---------r~~~~i~~~L~~ag~-----~~~dId~VvLVGGssR 340 (668)
T PRK13410 275 DISLPFITATEDGPKHIETRLDRKQFESLCGDLLD---------RLLRPVKRALKDAGL-----SPEDIDEVVLVGGSTR 340 (668)
T ss_pred EEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-----ChhhCcEEEEECCccc
Confidence 22222 11 1234454444 23333332 355666677765543 2344578999999999
Q ss_pred CccHHHHHhhhh
Q 015305 396 LPGLAGIRNSFN 407 (409)
Q Consensus 396 ipGf~eRL~~E~ 407 (409)
+|.+.+.+++.+
T Consensus 341 iP~V~~~l~~~f 352 (668)
T PRK13410 341 MPMVQQLVRTLI 352 (668)
T ss_pred cHHHHHHHHHHc
Confidence 999999998654
No 39
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.02 E-value=1.9e-08 Score=108.17 Aligned_cols=185 Identities=18% Similarity=0.147 Sum_probs=114.0
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEe
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~ 260 (409)
..++++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. ..-+|+|+|+++++|+.+-
T Consensus 150 ~~~VITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 150 DGAVITVPAYFD------DAQRQATKDA-ARL---AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred ceEEEEECCCCC------HHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 468889887652 4566655443 344 899999999999999988763 3468999999999988763
Q ss_pred --cCeE-eecccEEEEccchhHHHHHHHHHHHhcC-CCC-CcH-------HHHHHHHHhhcccccchHHhhhccccceEE
Q 015305 261 --HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQNN-INF-GSL-------YTVRTLKEKLCYVAADYKAELSKDTQASLE 328 (409)
Q Consensus 261 --dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~~-~~~-~~~-------~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~ 328 (409)
.|.. +.. ......+||.++++.|.+.+.++. ... .+. ..++..|+.++.- ....+.
T Consensus 220 ~~~~~~evla-t~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~-----------~~~~i~ 287 (616)
T PRK05183 220 LSKGVFEVLA-TGGDSALGGDDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA-----------DSVEVS 287 (616)
T ss_pred eeCCEEEEEE-ecCCCCcCHHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC-----------ceEEEE
Confidence 3322 111 122357999999999998887642 222 111 2344555544311 112233
Q ss_pred eCCCcEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhh
Q 015305 329 IAGEGWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFN 407 (409)
Q Consensus 329 Lpdg~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~ 407 (409)
+++-. -.|+.+.| ...+.++. .+.+.|.+++++... . ..-...|+|+||+|.+|++.++|++..
T Consensus 288 i~~~~-~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssriP~v~~~l~~~f 352 (616)
T PRK05183 288 VALWQ-GEITREQFNALIAPLVK---------RTLLACRRALRDAGV-E----ADEVKEVVMVGGSTRVPLVREAVGEFF 352 (616)
T ss_pred EecCC-CeEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----cccCCEEEEECCcccChHHHHHHHHHh
Confidence 33211 12443333 22233332 355666777766543 2 233578999999999999999998754
No 40
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.93 E-value=9.3e-09 Score=105.78 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=106.1
Q ss_pred cCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCC
Q 015305 221 LNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF 295 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~ 295 (409)
.|..-..+..+|++++++... ...+|||+|+++|+++-+.+|.+... ..+++||+++|+.+...|.-
T Consensus 178 aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~---~~i~~GG~~it~dIa~~l~i----- 249 (420)
T PRK09472 178 CGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT---KVIPYAGNVVTSDIAYAFGT----- 249 (420)
T ss_pred cCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE---eeeechHHHHHHHHHHHhCc-----
Confidence 788878888999999998753 34699999999999999999988754 77999999999999876642
Q ss_pred CcHHHHHHHHHhhcccccchHHhhhccccceEEeCC--Cc-EEEecceeeccccccccCCcCCccCCchHHHHHHHHhcC
Q 015305 296 GSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG--EG-WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHC 372 (409)
Q Consensus 296 ~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpd--g~-~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~ 372 (409)
+.+.+|.+|.+++....+... ....+++++ +. ...++.. ...|++-. ....|.++|.++++.+
T Consensus 250 -~~~~AE~lK~~~g~~~~~~~~-----~~~~i~v~~~~~~~~~~i~~~--~l~~ii~~------r~~ei~~~i~~~l~~~ 315 (420)
T PRK09472 250 -PPSDAEAIKVRHGCALGSIVG-----KDESVEVPSVGGRPPRSLQRQ--TLAEVIEP------RYTELLNLVNEEILQL 315 (420)
T ss_pred -CHHHHHHHHHhcceeccccCC-----CCceeEecCCCCCCCeEEcHH--HHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 468899999887654322110 111233331 11 1122111 11121111 0112445566656544
Q ss_pred CCCCccc---hHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 373 HYAELSG---DDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 373 ~~~dl~~---r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
+. ++.. ...+-+.||||||+|+|||+.+.+++-++
T Consensus 316 ~~-~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~ 353 (420)
T PRK09472 316 QE-QLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH 353 (420)
T ss_pred HH-HHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC
Confidence 43 3210 12455669999999999999998887653
No 41
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.89 E-value=3.5e-08 Score=105.70 Aligned_cols=188 Identities=19% Similarity=0.269 Sum_probs=115.6
Q ss_pred CeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC------cceEEEEeCCceeEEEEEe
Q 015305 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPIL 260 (409)
Q Consensus 187 pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~------~sglVVDiG~~~T~v~PV~ 260 (409)
.++++.|.... ...|+.+++.+ +. .|.+-+.++++|.+|+++++. .+-+|+|+|+++++++.+-
T Consensus 137 ~~vitVPa~~~------~~qr~~~~~Aa-~~---agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~ 206 (602)
T PF00012_consen 137 DVVITVPAYFT------DEQRQALRDAA-EL---AGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVE 206 (602)
T ss_dssp EEEEEE-TT--------HHHHHHHHHHH-HH---TT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEE
T ss_pred cceeeechhhh------hhhhhcccccc-cc---cccccceeecccccccccccccccccccceeccccccceEeeeehh
Confidence 58899887642 45666555443 33 788889999999999988763 3669999999999888763
Q ss_pred --cCeEeecccEEEEccchhHHHHHHHHHHHhc-----CCCCC-c-------HHHHHHHHHhhcccccchHHhhhccccc
Q 015305 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFG-S-------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (409)
Q Consensus 261 --dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~-~-------~~~ve~iKe~~c~v~~d~~~e~~~~~~~ 325 (409)
+|..--........+||.++++.|.+++.++ +.... + ...++.+|+.+.... ....
T Consensus 207 ~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~---------~~~~ 277 (602)
T PF00012_consen 207 FSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSND---------NTEI 277 (602)
T ss_dssp EETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSS---------SSEE
T ss_pred cccccccccccccccccccceecceeecccccccccccccccccccccccccccccccccccccccc---------cccc
Confidence 4532211023446799999999999887653 22221 1 124556666554310 0011
Q ss_pred eEE---eCC-Cc--EEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCcc
Q 015305 326 SLE---IAG-EG--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (409)
Q Consensus 326 ~y~---Lpd-g~--~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG 398 (409)
.+. +.+ |. .+.|..+.| ...+.+++ .+.++|.++++++.. . ..=...|+|+||+|.+|.
T Consensus 278 ~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~-~----~~~i~~V~lvGG~sr~p~ 343 (602)
T PF00012_consen 278 TISIESLYDDGEDFSITITREEFEELCEPLLE---------RIIEPIEKALKDAGL-K----KEDIDSVLLVGGSSRIPY 343 (602)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHHHTHHHHH---------HTHHHHHHHHHHTT-------GGGESEEEEESGGGGSHH
T ss_pred ccccccccccccccccccccceeccccccccc---------ccccccccccccccc-c----ccccceeEEecCcccchh
Confidence 111 112 33 345555554 23333443 366778888877654 2 233477999999999999
Q ss_pred HHHHHhhhh
Q 015305 399 LAGIRNSFN 407 (409)
Q Consensus 399 f~eRL~~E~ 407 (409)
+.++|++.+
T Consensus 344 v~~~l~~~f 352 (602)
T PF00012_consen 344 VQEALKELF 352 (602)
T ss_dssp HHHHHHHHT
T ss_pred hhhhhhhcc
Confidence 999998754
No 42
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.88 E-value=1.3e-09 Score=77.08 Aligned_cols=46 Identities=35% Similarity=0.765 Sum_probs=40.3
Q ss_pred ccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHh
Q 015305 38 FDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQ 83 (409)
Q Consensus 38 ~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 83 (409)
+..||.|++.+|+.+|++.|+++++.|||.|+.+++++.+|.++.+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 5689999999999999999999999999999999999999998864
No 43
>PRK11678 putative chaperone; Provisional
Probab=98.85 E-value=1.7e-07 Score=97.07 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=61.7
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHH--HHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEE
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQL--KDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVP 258 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~--~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~P 258 (409)
..+||+.|.... +...+...|+.. +....+. .|++.+.++++|++|++++|. ..-+|+|+|+++++++-
T Consensus 150 ~~~VItvPa~F~-~~~~~~~qr~a~~~l~~Aa~~---AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Sv 225 (450)
T PRK11678 150 TQAVIGRPVNFQ-GLGGEEANRQAEGILERAAKR---AGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSM 225 (450)
T ss_pred CcEEEEECCccc-cCCcchhHHHHHHHHHHHHHH---cCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEE
Confidence 468999887431 001112333321 1223333 899999999999999999873 55799999999999887
Q ss_pred EecC-----------eEeecccEEEEccchhHHHHHHH
Q 015305 259 ILHG-----------KVMRKVGVEVMGLGALKLTGYLR 285 (409)
Q Consensus 259 V~dG-----------~~l~~~~~~~~~iGG~~lt~~L~ 285 (409)
|--+ .++-+ + . ..+||+++|..|.
T Consensus 226 v~~~~~~~~~~~r~~~vla~-~-G-~~lGG~DfD~~L~ 260 (450)
T PRK11678 226 LLMGPSWRGRADRSASLLGH-S-G-QRIGGNDLDIALA 260 (450)
T ss_pred EEecCcccccCCcceeEEec-C-C-CCCChHHHHHHHH
Confidence 6321 12222 1 1 3699999999986
No 44
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.82 E-value=2.4e-09 Score=72.84 Aligned_cols=40 Identities=30% Similarity=0.699 Sum_probs=38.7
Q ss_pred CCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHH
Q 015305 41 IPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIF 80 (409)
Q Consensus 41 lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~ 80 (409)
||.|++.+|+.+|+++|+++++.|||.||.+++++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999974
No 45
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.72 E-value=9.8e-08 Score=97.23 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=105.8
Q ss_pred HHHHHHHhhcCCCeeeeeccchHHHHHcC-----CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHH
Q 015305 212 DCFQQVLFDLNVPAVCAINQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRL 286 (409)
Q Consensus 212 E~l~e~lFE~~vpav~~~~~~vlal~a~G-----~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~ 286 (409)
+.+.+++-..|..-..+.-++++++.++= .-..++||+|+++|+|+.+.+|.+... ..+++||+++|+.+..
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~---~~ipvgG~~vT~DIa~ 244 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT---GVIPVGGDHVTKDIAK 244 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE---eeEeeCccHHHHHHHH
Confidence 33444333356665666667777777664 357899999999999999999988865 6799999999999998
Q ss_pred HHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCC--CcE-EEecceeeccccccccCCcCCccCCchHH
Q 015305 287 LMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG--EGW-FTLSKERFQTGEILFQPRMADVRTMGLDQ 363 (409)
Q Consensus 287 lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpd--g~~-i~l~~erf~~~E~LF~P~~~g~~~~gL~~ 363 (409)
.|.. +.+.+|+||.+++....+.. .....++.|. +.. ..+. +....++.= .+..-+-+
T Consensus 245 ~l~t------~~~~AE~iK~~~g~a~~~~~-----~~~~~i~v~~vg~~~~~~~t--~~~ls~II~------aR~~Ei~~ 305 (418)
T COG0849 245 GLKT------PFEEAERIKIKYGSALISLA-----DDEETIEVPSVGSDIPRQVT--RSELSEIIE------ARVEEILE 305 (418)
T ss_pred HhCC------CHHHHHHHHHHcCccccCcC-----CCcceEecccCCCcccchhh--HHHHHHHHH------hhHHHHHH
Confidence 8875 57899999999876543311 1111222221 111 1111 111111110 01112445
Q ss_pred HHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHh
Q 015305 364 AVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRN 404 (409)
Q Consensus 364 ~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~ 404 (409)
++...+++... ...+-+.||||||++++||+.|--+
T Consensus 306 lV~~~l~~~g~-----~~~~~~gvVlTGG~a~l~Gi~elA~ 341 (418)
T COG0849 306 LVKAELRKSGL-----PNHLPGGVVLTGGGAQLPGIVELAE 341 (418)
T ss_pred HHHHHHHHcCc-----cccCCCeEEEECchhcCccHHHHHH
Confidence 66666666553 2467788999999999999977543
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.46 E-value=2e-06 Score=86.04 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhhcCCC--eeeeeccchHHHHH-----c---C-Cc-ceEEEEeCCceeEEEEEecCeEeecccEEEEcc
Q 015305 208 RQLKDCFQQVLFDLNVP--AVCAINQATLALYA-----A---K-RT-SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGL 275 (409)
Q Consensus 208 ~~~~E~l~e~lFE~~vp--av~~~~~~vlal~a-----~---G-~~-sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~i 275 (409)
++..+.+.+++-+.|+. ++.+.+-+++-++. . . .. +.++||+|+++|+++.+.+|.+... ..+++
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~---r~i~~ 218 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT---REVPF 218 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE---EEeec
Confidence 34455566654445554 44443334434442 1 1 22 4899999999999999999988865 78999
Q ss_pred chhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCCCcEEEecceeeccccccccCCcCC
Q 015305 276 GALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMAD 355 (409)
Q Consensus 276 GG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g 355 (409)
||.++++.+.+.+.- +.+.++++|.+.++.. ++.. .+.+..+
T Consensus 219 G~~~i~~~i~~~~~~------~~~~Ae~~k~~~~~~~-~~~~-------------------------~~~~~~~------ 260 (348)
T TIGR01175 219 GTRQLTSELSRAYGL------NPEEAGEAKQQGGLPL-LYDP-------------------------EVLRRFK------ 260 (348)
T ss_pred hHHHHHHHHHHHcCC------CHHHHHHHHhcCCCCC-chhH-------------------------HHHHHHH------
Confidence 999999988765532 3577888887643211 0000 0000000
Q ss_pred ccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 356 VRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 356 ~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
..+..-|..+|+-... .. .....+.|+||||++.++||.+.|++++.
T Consensus 261 ---~~l~~eI~~~l~~~~~-~~--~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 261 ---GELVDEIRRSLQFFTA-QS--GTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred ---HHHHHHHHHHHHhhcC-CC--CCcccceEEEECccccchhHHHHHHHHHC
Confidence 1244455556543322 11 12346789999999999999999988763
No 47
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.9e-05 Score=84.43 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEE
Q 015305 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPI 259 (409)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV 259 (409)
-+.++++.|.... ...|+...+ ..+. .|.+-+.++++|.+|+|++|. ..-+|+|+|++++++.-|
T Consensus 120 v~~~VItVPayF~------d~qR~at~~-A~~i---aGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll 189 (579)
T COG0443 120 VTDAVITVPAYFN------DAQRQATKD-AARI---AGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLL 189 (579)
T ss_pred cceEEEEeCCCCC------HHHHHHHHH-HHHH---cCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEE
Confidence 3568999887653 344554433 3344 899999999999999999984 467999999999999877
Q ss_pred ec--CeE-eecccEEEEccchhHHHHHHHHHHHhc
Q 015305 260 LH--GKV-MRKVGVEVMGLGALKLTGYLRLLMQQN 291 (409)
Q Consensus 260 ~d--G~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (409)
-= |.. +.. +.....+||++++..|...+..+
T Consensus 190 ~~~~g~~ev~a-t~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 190 EIGDGVFEVLA-TGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred EEcCCEEEEee-cCCCcccCchhHHHHHHHHHHHH
Confidence 43 321 122 34556899999999888766654
No 48
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.19 E-value=1.1e-05 Score=80.07 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=61.9
Q ss_pred cCCCeeeeeccchHHHHHc---------CCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhc
Q 015305 221 LNVPAVCAINQATLALYAA---------KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~---------G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (409)
..+..+.+.+|++.|++.. ...+.+|||||+.+|+++.+-++.+... .+...+.|...+.+.+.+.+.++
T Consensus 137 i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~-~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 137 VTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQK-RSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred EEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEccc-ccCCchhHHHHHHHHHHHHHHhh
Confidence 3677888999999887764 2345699999999999988777777665 55668899999999999999865
Q ss_pred -CCC-CCcHHHHHH
Q 015305 292 -NIN-FGSLYTVRT 303 (409)
Q Consensus 292 -~~~-~~~~~~ve~ 303 (409)
+.. ..+.+.++.
T Consensus 216 ~g~~~~~~~~~i~~ 229 (320)
T TIGR03739 216 IGTPAYRDIDRIDL 229 (320)
T ss_pred cCCCCccCHHHHHH
Confidence 443 233444544
No 49
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.14 E-value=3.5e-06 Score=84.28 Aligned_cols=155 Identities=18% Similarity=0.232 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhhcCCC--eeeeeccchHHHHHcC---------CcceEEEEeCCceeEEEEEecCeEeecccEEEEcc
Q 015305 207 RRQLKDCFQQVLFDLNVP--AVCAINQATLALYAAK---------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGL 275 (409)
Q Consensus 207 R~~~~E~l~e~lFE~~vp--av~~~~~~vlal~a~G---------~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~i 275 (409)
|+.+.+...+++-+.|.. ++-+..-+++-+|... ..+-++||||++.|+++-+.+|.++.. +.+++
T Consensus 134 ~k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~---R~i~~ 210 (340)
T PF11104_consen 134 PKEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS---RSIPI 210 (340)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE---EEES-
T ss_pred cHHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE---EEEee
Confidence 344556666654444444 4443333444444331 134589999999999999999998865 77899
Q ss_pred chhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCCCcEEEecceeeccccccccCCcCC
Q 015305 276 GALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMAD 355 (409)
Q Consensus 276 GG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g 355 (409)
||+++++.+.+.+.- +.+.++.+|..... ..+... .+-+..+
T Consensus 211 G~~~l~~~i~~~~~i------~~~~Ae~~k~~~~l-~~~~~~-------------------------~~l~~~~------ 252 (340)
T PF11104_consen 211 GGNDLTEAIARELGI------DFEEAEELKRSGGL-PEEYDQ-------------------------DALRPFL------ 252 (340)
T ss_dssp SHHHHHHHHHHHTT--------HHHHHHHHHHT-------HH-------------------------HHHHHHH------
T ss_pred CHHHHHHHHHHhcCC------CHHHHHHHHhcCCC-CcchHH-------------------------HHHHHHH------
Confidence 999999988875442 24566776654211 101000 0111111
Q ss_pred ccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 356 VRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 356 ~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
..|..-|..+++-... .. ...=.+.|+||||+|.++||.+.|.+++.
T Consensus 253 ---~~l~~EI~rsl~~y~~-~~--~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 253 ---EELAREIRRSLDFYQS-QS--GGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp ---HHHHHHHHHHHHHHHH-H--------SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHh-cC--CCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 1244555555543221 11 12345779999999999999999998763
No 50
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.11 E-value=1.3e-05 Score=80.33 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=56.4
Q ss_pred CCCeeeeeccchHHHHHcCC-------------cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHH
Q 015305 222 NVPAVCAINQATLALYAAKR-------------TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLM 288 (409)
Q Consensus 222 ~vpav~~~~~~vlal~a~G~-------------~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL 288 (409)
++..+.+.+|++.|+|.... ...+|||||+.+|+++.+.+|.+... ....++.|+.++.+.+.+.+
T Consensus 152 ~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~-~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 152 NVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEE-ESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEccc-ccccccchHHHHHHHHHHHH
Confidence 45678889999999876532 24599999999999999988888776 55668999999999999999
Q ss_pred Hhc
Q 015305 289 QQN 291 (409)
Q Consensus 289 ~~~ 291 (409)
+.+
T Consensus 231 ~~~ 233 (344)
T PRK13917 231 SKK 233 (344)
T ss_pred Hhh
Confidence 543
No 51
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00035 Score=74.43 Aligned_cols=95 Identities=24% Similarity=0.262 Sum_probs=69.3
Q ss_pred CeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC----------cceEEEEeCCceeEE
Q 015305 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR----------TSGIVVNIGFQVTSV 256 (409)
Q Consensus 187 pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~----------~sglVVDiG~~~T~v 256 (409)
-++++.|++.. .+.|+.+++. .++ .|..-++++++..+++..+|. +.-++-|+|.++|++
T Consensus 160 d~ViTVP~~F~------qaeR~all~A-a~i---agl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~A 229 (902)
T KOG0104|consen 160 DMVITVPPFFN------QAERRALLQA-AQI---AGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSA 229 (902)
T ss_pred heEEeCCcccC------HHHHHHHHHH-HHh---cCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeE
Confidence 47888888763 6788776553 355 788889999999999998883 456999999999999
Q ss_pred EEEecCeEeec------ccEEE------EccchhHHHHHHHHHHHhc
Q 015305 257 VPILHGKVMRK------VGVEV------MGLGALKLTGYLRLLMQQN 291 (409)
Q Consensus 257 ~PV~dG~~l~~------~~~~~------~~iGG~~lt~~L~~lL~~~ 291 (409)
+-|.--.+-.. +.++. ...||..++..|+++|.+.
T Consensus 230 tivsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 230 TIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred EEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHH
Confidence 88752211111 01222 3478999999999988864
No 52
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=97.82 E-value=5.7e-05 Score=68.94 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=94.3
Q ss_pred cCCCeeeeeccchHHHHHcCCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHH
Q 015305 221 LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYT 300 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ 300 (409)
.|...++.+++|.++++-.+...|.|||+|.++|-|.-+-+|.++.. ---+.||.+++-.|. |..-.+.+.
T Consensus 119 AGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~---ADEpTGGtHmtLvlA------G~ygi~~Ee 189 (277)
T COG4820 119 AGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS---ADEPTGGTHMTLVLA------GNYGISLEE 189 (277)
T ss_pred cCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe---ccCCCCceeEEEEEe------cccCcCHhH
Confidence 78888999999999999999999999999999999999999999875 345889988875443 222224677
Q ss_pred HHHHHHhhcccccchHHhhhccccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccch
Q 015305 301 VRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGD 380 (409)
Q Consensus 301 ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r 380 (409)
+|++|+.. + +++.+ |-.- .|- ..-..+++..-|+..++.
T Consensus 190 AE~~Kr~~------------k---------~~~Ei------f~~v----~PV-----~eKMAeIv~~hie~~~i~----- 228 (277)
T COG4820 190 AEQYKRGH------------K---------KGEEI------FPVV----KPV-----YEKMAEIVARHIEGQGIT----- 228 (277)
T ss_pred HHHhhhcc------------c---------cchhc------ccch----hHH-----HHHHHHHHHHHhccCCCc-----
Confidence 88877531 0 01100 0000 010 012456666667666652
Q ss_pred HhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 381 DAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 381 ~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
.+.|+||.++.||+.+-++++++
T Consensus 229 -----dl~lvGGac~~~g~e~~Fe~~l~ 251 (277)
T COG4820 229 -----DLWLVGGACMQPGVEELFEKQLA 251 (277)
T ss_pred -----ceEEecccccCccHHHHHHHHhc
Confidence 23599999999999999988874
No 53
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.35 E-value=0.00014 Score=70.48 Aligned_cols=47 Identities=19% Similarity=0.418 Sum_probs=42.8
Q ss_pred cccCCCHHHHHHHHhhcCh-----hhhhhhhcchhhhHhhhcChHHHHHHHh
Q 015305 37 AFDQIPWDVLIQIVKLIGP-----KEAAKLCVVSKSWRALVSDNRLWIFFLQ 83 (409)
Q Consensus 37 ~~~~lp~~~~~~i~~~l~p-----~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 83 (409)
.+..||.||++.|+...=| .++.+|++|||-|+-.++||.|||.++.
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 3678999999999986655 9999999999999999999999998877
No 54
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.15 E-value=0.002 Score=66.37 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=90.3
Q ss_pred ceEEEeCCCCeEEEEEeC----CC-----CCCcccc--cccccCCc-cchH-------HHHHHHHHHHHHhhcccCCCC-
Q 015305 126 GSVIIDGGSGYCKFGWSK----YD-----CPSGRTA--TFLEFGNI-ESPM-------YSRLRHFFATIYSRMQVKPST- 185 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfag----e~-----~P~~~~~--t~~~~G~~-~~Pi-------~~~le~~~~~~~~~L~v~p~~- 185 (409)
-.|=||+||.+++.=||. +. .||+.+- .++.-+++ --|+ .++++.+.+.=|++-++.|++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID~~~i~~~V~~ey~~Agi~~~di 86 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEIDEAAIKELIEEEYQKAGIAPESI 86 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCccccHHHHHHHHHHHHHHcCCCHHHc
Confidence 568899999999998883 22 3554321 11111221 1243 257888887778888888763
Q ss_pred --CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHh---hcCCCeeeeeccchHHHHHcC--------CcceEEEEeCCc
Q 015305 186 --QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLF---DLNVPAVCAINQATLALYAAK--------RTSGIVVNIGFQ 252 (409)
Q Consensus 186 --~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lF---E~~vpav~~~~~~vlal~a~G--------~~sglVVDiG~~ 252 (409)
.-++++-.. ..++++.+.+-..=. +|=|..--+--+++++.+|+| ....++||||++
T Consensus 87 e~~ahIITg~~----------~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgG 156 (475)
T PRK10719 87 DSGAVIITGET----------ARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGG 156 (475)
T ss_pred cccEEEEEech----------hHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCC
Confidence 334444332 122233222222000 011111111122223344443 356699999999
Q ss_pred eeEEEEEecCeEeecccEEEEccchhHHHH-----------HHHHHHHhcCCCC
Q 015305 253 VTSVVPILHGKVMRKVGVEVMGLGALKLTG-----------YLRLLMQQNNINF 295 (409)
Q Consensus 253 ~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~-----------~L~~lL~~~~~~~ 295 (409)
+|++.-+.+|.++.. ..+++||+++|. ..+.+++..+..+
T Consensus 157 TT~iaVf~~G~l~~T---~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~~ 207 (475)
T PRK10719 157 TANYALFDAGKVIDT---ACLNVGGRLIETDSQGRVTYISPPGQMILDELGLAI 207 (475)
T ss_pred ceEEEEEECCEEEEE---EEEecccceEEECCCCCEEEEChHHHHHHHHcCCCc
Confidence 999999999998865 668999998776 3556666665543
No 55
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.08 E-value=0.0019 Score=64.07 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=50.8
Q ss_pred cCCCeeeeeccchHHHHHcC-----CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhc
Q 015305 221 LNVPAVCAINQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~G-----~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (409)
+++..+.+.||++.|.|..- ..+-+|||||+.+|+++-|.++....+.+....++|-..+.+.+.+.|...
T Consensus 138 i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 138 ITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp -EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred EEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 44778999999999988752 357899999999999998876654333133345789999999999988874
No 56
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.01 Score=63.29 Aligned_cols=184 Identities=18% Similarity=0.243 Sum_probs=107.6
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-------cceEEEEeCCceeEEEE
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-------TSGIVVNIGFQVTSVVP 258 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-------~sglVVDiG~~~T~v~P 258 (409)
..++++.|.... ...|.. .+..... .|.+.+-+++.|.+++.|+|. .+-+|.|.|++..+|.+
T Consensus 144 ~~aviTVPa~F~------~~Qr~a-t~~A~~i---aGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~ 213 (620)
T KOG0101|consen 144 KKAVVTVPAYFN------DSQRAA-TKDAALI---AGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSV 213 (620)
T ss_pred eeEEEEecCCcC------HHHHHH-HHHHHHh---cCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeee
Confidence 356777775431 233433 3334444 788899999999999999873 45599999999999888
Q ss_pred Ee-c-Ce-EeecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhcc
Q 015305 259 IL-H-GK-VMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKD 322 (409)
Q Consensus 259 V~-d-G~-~l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~ 322 (409)
+. + |. .+.. ..--.++||.++++.|...+... +..... ...+|..|..+..+.
T Consensus 214 l~i~gG~~~vka-t~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~---------- 282 (620)
T KOG0101|consen 214 LSLEGGIFEVKA-TAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSST---------- 282 (620)
T ss_pred EEeccchhhhhh-hcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccc----------
Confidence 74 3 32 1122 23446899999988887665542 111111 123445555542221
Q ss_pred ccceEE---eCCCcEE--Eecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCC
Q 015305 323 TQASLE---IAGEGWF--TLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL 396 (409)
Q Consensus 323 ~~~~y~---Lpdg~~i--~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~i 396 (409)
..+.+ |-+|..+ .+...|| ....-||.- ..+.+..+++.... | +.-..-|||+||++.+
T Consensus 283 -~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~~-d----k~~i~~vvlVGGstri 347 (620)
T KOG0101|consen 283 -QASIEIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAKL-D----KSDIDEVVLVGGSTRI 347 (620)
T ss_pred -cceeccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhcc-C----ccCCceeEEecCcccc
Confidence 11111 2223222 2344555 244456643 23444556655543 2 3445679999999999
Q ss_pred ccHHHHHhh
Q 015305 397 PGLAGIRNS 405 (409)
Q Consensus 397 pGf~eRL~~ 405 (409)
|.+..-++.
T Consensus 348 Pk~~~ll~d 356 (620)
T KOG0101|consen 348 PKVQKLLED 356 (620)
T ss_pred hHHHHHHHH
Confidence 999877764
No 57
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.64 E-value=0.0095 Score=58.55 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=75.2
Q ss_pred eEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccc
Q 015305 244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDT 323 (409)
Q Consensus 244 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~ 323 (409)
..|+|||+..|.+.-+++|+++.. +..++||+.+++.+.+.+.- +.+-++++|.... .+.||..+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~---r~~~~g~~Qlt~~i~r~~~L------~~~~a~~~k~~~~-~P~~y~~~vl--- 261 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT---REVPVGTDQLTQEIQRAYSL------TEEKAEEIKRGGT-LPTDYGSEVL--- 261 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE---eeccCcHHHHHHHHHHHhCC------ChhHhHHHHhCCC-CCCchhHHHH---
Confidence 359999999999999999999976 88999999999988876553 2456667665422 1223322210
Q ss_pred cceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCC-CCccchHhhcCCcEEeccCCCCccHHHH
Q 015305 324 QASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHY-AELSGDDAWFKTVILTGGSACLPGLAGI 402 (409)
Q Consensus 324 ~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~-~dl~~r~~L~~NIvLtGG~S~ipGf~eR 402 (409)
+|. -..|.+-|..+|+---. ++. .-...|+|+||++.+.|+.+-
T Consensus 262 --------------------------~~f-----~~~l~~ei~Rslqfy~~~s~~----~~id~i~LaGggA~l~gL~~~ 306 (354)
T COG4972 262 --------------------------RPF-----LGELTQEIRRSLQFYLSQSEM----VDIDQILLAGGGASLEGLAAA 306 (354)
T ss_pred --------------------------HHH-----HHHHHHHHHHHHHHHHhcccc----ceeeEEEEecCCcchhhHHHH
Confidence 010 01144445555543210 021 234679999999999999888
Q ss_pred Hhhhh
Q 015305 403 RNSFN 407 (409)
Q Consensus 403 L~~E~ 407 (409)
+.+-+
T Consensus 307 i~qrl 311 (354)
T COG4972 307 IQQRL 311 (354)
T ss_pred HHHHh
Confidence 76643
No 58
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.35 E-value=0.017 Score=59.67 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=96.3
Q ss_pred ceEEEeCCCCeEEEEEeC---C-C-----CCCcccc--cccccCCc-cchH-------HHHHHHHHHHHHhhcccCCCC-
Q 015305 126 GSVIIDGGSGYCKFGWSK---Y-D-----CPSGRTA--TFLEFGNI-ESPM-------YSRLRHFFATIYSRMQVKPST- 185 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfag---e-~-----~P~~~~~--t~~~~G~~-~~Pi-------~~~le~~~~~~~~~L~v~p~~- 185 (409)
..|=||+||.+++.=||. + . .||+.+- .++.-+++ ..|+ .++++.+.+.=|++-++.|++
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID~~al~~iv~~eY~~Agi~p~~I 83 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEIDAEALKEIVEEEYRKAGITPEDI 83 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccCHHHHHHHHHHHHHHcCCCHHHC
Confidence 468899999999998884 1 1 3554331 11111221 1243 257888888778899998864
Q ss_pred --CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcC--------CcceEEEEeCCceeE
Q 015305 186 --QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK--------RTSGIVVNIGFQVTS 255 (409)
Q Consensus 186 --~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G--------~~sglVVDiG~~~T~ 255 (409)
-.|++|--.. -+.+=+.+.+.+-+..=+|=|..-----++++|..++| ..+-+=+|||+++|.
T Consensus 84 ~TGAVIITGETA-------rKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN 156 (473)
T PF06277_consen 84 DTGAVIITGETA-------RKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTN 156 (473)
T ss_pred ccccEEEecchh-------hhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCcee
Confidence 5688874321 11222223333333210122211111234567777776 244466899999999
Q ss_pred EEEEecCeEeecccEEEEccchh-----------HHHHHHHHHHHhcCCCC
Q 015305 256 VVPILHGKVMRKVGVEVMGLGAL-----------KLTGYLRLLMQQNNINF 295 (409)
Q Consensus 256 v~PV~dG~~l~~~~~~~~~iGG~-----------~lt~~L~~lL~~~~~~~ 295 (409)
++-+-+|.++.. ..+++||+ ++..-++.+++..+...
T Consensus 157 ~avf~~G~v~~T---~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 157 IAVFDNGEVIDT---ACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred EEEEECCEEEEE---EEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 999999999876 45899998 45566777777776553
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.21 E-value=0.004 Score=61.19 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=43.2
Q ss_pred ccCCC----HHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhh
Q 015305 38 FDQIP----WDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (409)
Q Consensus 38 ~~~lp----~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (409)
.+.|| ..+...||++|...+||.+-+|||.|+.+.+|+.+|+....+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~ 125 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIER 125 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45899 999999999999999999999999999999999999876554
No 60
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.039 Score=55.65 Aligned_cols=68 Identities=19% Similarity=0.092 Sum_probs=48.2
Q ss_pred cCCCeeeeeccchHHHHHcC------CcceEEEEeCCceeEEE--EEecCeEe-ecccEEEEccchhHHHHHHHHHHH
Q 015305 221 LNVPAVCAINQATLALYAAK------RTSGIVVNIGFQVTSVV--PILHGKVM-RKVGVEVMGLGALKLTGYLRLLMQ 289 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~G------~~sglVVDiG~~~T~v~--PV~dG~~l-~~~~~~~~~iGG~~lt~~L~~lL~ 289 (409)
.|..-+.+++.|.+|+.|+| ..+-+|.|.|+++-+|. .|-+|..- .. ...-..+||.++++.+++.+.
T Consensus 198 AgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVla-TnGDThLGGEDFD~rvm~~fi 274 (663)
T KOG0100|consen 198 AGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLA-TNGDTHLGGEDFDQRVMEYFI 274 (663)
T ss_pred ccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEe-cCCCcccCccchHHHHHHHHH
Confidence 45556888999999999997 36779999999987765 44555321 11 223457999999887766544
No 61
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.90 E-value=0.0054 Score=61.86 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=34.9
Q ss_pred cccCCCHHHHHHHHhhc-ChhhhhhhhcchhhhHhhhcC
Q 015305 37 AFDQIPWDVLIQIVKLI-GPKEAAKLCVVSKSWRALVSD 74 (409)
Q Consensus 37 ~~~~lp~~~~~~i~~~l-~p~~~~~~~~~~~~~~~~~~~ 74 (409)
.-..||.|++..|..+| ...|+.|.+.|||+||+.+.-
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 34689999999999999 889999999999999999884
No 62
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.88 E-value=0.066 Score=52.70 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=34.2
Q ss_pred cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHH
Q 015305 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (409)
Q Consensus 242 ~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~ 285 (409)
.+++++|+|+++|.++-+-+|.+... ..+++|...+++.+.
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~~~---~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPGEG---VSLPLGCVRLTEQFF 165 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEeEE---EEEccceEEhHHhhC
Confidence 45799999999999998888877654 789999998887643
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0061 Score=59.36 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=42.9
Q ss_pred CcccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHH
Q 015305 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (409)
Q Consensus 36 ~~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (409)
..++.||-+++++|++.|.-+|+-|.+.|||-|..+++|.++|.-.
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 3489999999999999999999999999999999999999999644
No 64
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=95.69 E-value=0.44 Score=45.44 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=32.2
Q ss_pred ceEEEEeCCceeEEEEEecCeEeecccE-EEEccchhHHHHHHHHHHH
Q 015305 243 SGIVVNIGFQVTSVVPILHGKVMRKVGV-EVMGLGALKLTGYLRLLMQ 289 (409)
Q Consensus 243 sglVVDiG~~~T~v~PV~dG~~l~~~~~-~~~~iGG~~lt~~L~~lL~ 289 (409)
...|||||.+.|.++-+-+|.+..- .. .....|+-.+.+.+.+.|.
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~-~~n~~ca~Gtg~f~e~~a~~l~ 138 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDF-TMNDKCAAGTGRFLEVTARRLG 138 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeee-eecCcccccccHHHHHHHHHcC
Confidence 3469999999999999988887632 11 3345666667666665544
No 65
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=95.46 E-value=0.14 Score=50.74 Aligned_cols=125 Identities=16% Similarity=0.235 Sum_probs=71.2
Q ss_pred EeCCCCeEEEEEeCCCCCCcccccccccCCccchHHHH---HHHHHHHHHhhcccCCCCCCeEEEecCCCCCCCcchHHh
Q 015305 130 IDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSR---LRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKAS 206 (409)
Q Consensus 130 ID~GS~~iKaGfage~~P~~~~~t~~~~G~~~~Pi~~~---le~~~~~~~~~L~v~p~~~pVll~ep~~~~~~~~~~~~~ 206 (409)
+|+|..++|+-.-.++. ....+ -....|||.. +...+..+.+++.. ...+-|.||--... . -..
T Consensus 3 ~DiGGA~~K~a~~~~~g---~~~~v---~~~~~plW~~~~~L~~~l~~~~~~~~~-~~~~avtMTgELaD-----~-f~~ 69 (318)
T TIGR03123 3 IDIGGANTKAAELDEDG---RIKEV---HQLYCPLWKGNDKLAETLKEISQDLSS-ADNVAVTMTGELAD-----C-FED 69 (318)
T ss_pred cccccceeeeEEecCCC---ceeEE---EEecCcccCCchHHHHHHHHHHHhcCc-cceEEEEeehhhhh-----h-hcC
Confidence 79999999998553221 11111 1245689854 44555555555532 15678888832210 0 123
Q ss_pred HHHHHHHHHHHHhh-cCCCeeeeec-cchH---------------------HHHHcCCcceEEEEeCCceeEEEEEecCe
Q 015305 207 RRQLKDCFQQVLFD-LNVPAVCAIN-QATL---------------------ALYAAKRTSGIVVNIGFQVTSVVPILHGK 263 (409)
Q Consensus 207 R~~~~E~l~e~lFE-~~vpav~~~~-~~vl---------------------al~a~G~~sglVVDiG~~~T~v~PV~dG~ 263 (409)
|+.=.+.+.+.+-+ |+.+-..+.. ..++ +.++....++|++|+|..+|+|+||.+|.
T Consensus 70 r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~ 149 (318)
T TIGR03123 70 KAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGE 149 (318)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCE
Confidence 33323344444444 7654333221 1111 22223368899999999999999999999
Q ss_pred Eeec
Q 015305 264 VMRK 267 (409)
Q Consensus 264 ~l~~ 267 (409)
+...
T Consensus 150 p~~~ 153 (318)
T TIGR03123 150 VAAK 153 (318)
T ss_pred eeee
Confidence 8754
No 66
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.43 E-value=0.15 Score=53.82 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHH
Q 015305 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY 283 (409)
Q Consensus 242 ~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~ 283 (409)
.+++|||||+++|.++-+-+|.+... ..+++|.-.+++.
T Consensus 132 ~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~ 170 (496)
T PRK11031 132 DQRLVVDIGGASTELVTGTGAQATSL---FSLSMGCVTWLER 170 (496)
T ss_pred CCEEEEEecCCeeeEEEecCCceeee---eEEeccchHHHHH
Confidence 35899999999999998878877654 7799999887654
No 67
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=95.43 E-value=0.033 Score=56.72 Aligned_cols=133 Identities=13% Similarity=0.031 Sum_probs=70.4
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccccCCccchHHHHHHHHHHHHHhhcccCCCCCC-eEEEecCCCCCCCcchH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQP-IVVSIPICHYDDTENAK 204 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~~G~~~~Pi~~~le~~~~~~~~~L~v~p~~~p-Vll~ep~~~~~~~~~~~ 204 (409)
-.+=||.||.++|+-.-.++ ..+...+... ..| .+..+++++.++++.+++.++.. +..|-
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~--~Ii~~~~~~t---~~~-~~~a~~~l~~~l~~~Gl~~~di~~i~~TG------------ 206 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDN--EVIGTGWVPT---TKV-IESAEEAVERALEEAGVSLEDVEAIGTTG------------ 206 (404)
T ss_pred EEEEEEcChhheeeEEEcCC--eEEEEEEeec---ccH-HHHHHHHHHHHHHHcCCCccceeEEEeee------------
Confidence 46889999999999776432 3322221111 123 34556666666777776554432 33432
Q ss_pred HhHHHHHHHHHHHHhhcCCCeeeeeccchH----HHHHcC--CcceEEEEeCCceeEEEEEecCeEeecccEEEEcc--c
Q 015305 205 ASRRQLKDCFQQVLFDLNVPAVCAINQATL----ALYAAK--RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGL--G 276 (409)
Q Consensus 205 ~~R~~~~E~l~e~lFE~~vpav~~~~~~vl----al~a~G--~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~i--G 276 (409)
.-|.. +-+. ++.+.+ +.+-.+ +.|-.. .....|+|||.+-+-++-+-+|.+..- .+.-..- +
T Consensus 207 yGR~~----i~~~---~~ad~i--v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~dF-~MNdkCAAGT 276 (404)
T TIGR03286 207 YGRFT----IGEH---FGADLI--QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPDNF-TMGGICAGAS 276 (404)
T ss_pred ecHHH----Hhhh---cCCCce--EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCceeeE-EEcCcccccC
Confidence 23332 2122 333332 222222 222222 247899999999999888878866532 1211223 3
Q ss_pred hhHHHHHHHH
Q 015305 277 ALKLTGYLRL 286 (409)
Q Consensus 277 G~~lt~~L~~ 286 (409)
|+.|...-+.
T Consensus 277 GrFLE~~A~~ 286 (404)
T TIGR03286 277 GRFLEMTAKR 286 (404)
T ss_pred cHHHHHHHHH
Confidence 5666554443
No 68
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=94.93 E-value=0.24 Score=48.54 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=59.7
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccccCCccchHHHHHHHHHHHHHhhcccCCCCCC-eEEEecCCCCCCCcchH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQP-IVVSIPICHYDDTENAK 204 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~~G~~~~Pi~~~le~~~~~~~~~L~v~p~~~p-Vll~ep~~~~~~~~~~~ 204 (409)
-.+=||+||.++|+-.-.++ ......+..-| .+..+..+.+++.++++++...++.. ++.|-.
T Consensus 33 ~~~GIDiGStt~K~Vlld~~--~i~~~~~~~tg---~~~~~~a~~~l~~~l~~~g~~~~~v~~~~~TGy----------- 96 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCDG--ELYGYNSMRTG---NNSPDSAKNALQGIMDKIGMKLEDINYVVGTGY----------- 96 (293)
T ss_pred EEEEEEeCchhEEEEEEeCC--EEEEEEeecCC---CCHHHHHHHHHHHHHHHcCCcccceEEEEEECc-----------
Confidence 35789999999998666433 22111111111 12234556677777777776554444 333322
Q ss_pred HhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHc----CCcceEEEEeCCceeEEEEE-ecCeEee
Q 015305 205 ASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAA----KRTSGIVVNIGFQVTSVVPI-LHGKVMR 266 (409)
Q Consensus 205 ~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~----G~~sglVVDiG~~~T~v~PV-~dG~~l~ 266 (409)
-|..+ . +-- ..+.+-.+.+.++ +.....|+|||.+-+-++-+ -+|.+..
T Consensus 97 -Gr~~~-----~----~a~---~~v~EItaha~Ga~~~~pp~v~tIIDIGGQDsK~I~~d~~G~v~d 150 (293)
T TIGR03192 97 -GRVNV-----P----FAH---KAITEIACHARGANYMGGNAVRTILDMGGQDCKAIHCDEKGKVTN 150 (293)
T ss_pred -chhhc-----c----hhh---cceeeHHHHHHHHHHhcCCCCCEEEEeCCCceEEEEEcCCCcEee
Confidence 22110 0 000 0122223333332 23567999999999999987 4676654
No 69
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.14 Score=48.86 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=69.9
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccccCCccchHHH---HHHHHHHHHHhhcccCCCCCCeEEEecCCCCCCCcc
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYS---RLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTEN 202 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~~G~~~~Pi~~---~le~~~~~~~~~L~v~p~~~pVll~ep~~~~~~~~~ 202 (409)
..+=||+|..++|+.-+.-+. ..+. -+.-|||. +++..+..+-.+ -++.--.|+|+-.... .
T Consensus 4 kilGiDIGGAntk~a~~DG~~--~~~d------~~YlPMWk~k~rL~~~Lkei~~k--~~~~~vgvvMTaELaD-----~ 68 (330)
T COG1548 4 KILGIDIGGANTKIASSDGDN--YKID------HIYLPMWKKKDRLEETLKEIVHK--DNVDYVGVVMTAELAD-----A 68 (330)
T ss_pred eEEEeeccCccchhhhccCCe--eeee------EEEeccccchhHHHHHHHHHhcc--CCcceeEEEeeHHHHH-----H
Confidence 467899999999987532111 1111 13469984 566555433322 2233356888843211 1
Q ss_pred hHHhHHHHHHHHHHHHhh-cCCCeeeee-ccchHH---------HHHc------------CCcceEEEEeCCceeEEEEE
Q 015305 203 AKASRRQLKDCFQQVLFD-LNVPAVCAI-NQATLA---------LYAA------------KRTSGIVVNIGFQVTSVVPI 259 (409)
Q Consensus 203 ~~~~R~~~~E~l~e~lFE-~~vpav~~~-~~~vla---------l~a~------------G~~sglVVDiG~~~T~v~PV 259 (409)
-..|.+=.|.+.+.+-. |++|--++- +..+.+ .-|+ -..+++.||+|..+|+|+||
T Consensus 69 -f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTTtDIIPi 147 (330)
T COG1548 69 -FKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTTTDIIPI 147 (330)
T ss_pred -hhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcccceEee
Confidence 12333334555565555 899953332 222211 0011 14679999999999999999
Q ss_pred ecCeE
Q 015305 260 LHGKV 264 (409)
Q Consensus 260 ~dG~~ 264 (409)
.+|..
T Consensus 148 ~~ge~ 152 (330)
T COG1548 148 KDGEA 152 (330)
T ss_pred cchhh
Confidence 99973
No 70
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.79 Score=49.33 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC------------cceEEEEeCCc
Q 015305 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------------TSGIVVNIGFQ 252 (409)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~------------~sglVVDiG~~ 252 (409)
-.+++|..|.+.. ...|+.++.+. ++ .|+.-+-++++-.+++.++|. .+-+.||+||+
T Consensus 137 v~DcvIavP~~FT------d~qRravldAA-~i---agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS 206 (727)
T KOG0103|consen 137 VSDCVIAVPSYFT------DSQRRAVLDAA-RI---AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHS 206 (727)
T ss_pred CCCeeEecccccc------HHHHHHHHhHH-hh---cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccc
Confidence 3568888888763 46677766544 44 788889999999999999982 34688999999
Q ss_pred eeEEEEEe--cCe--EeecccEEEEccchhHHHHHHHHHHHhc
Q 015305 253 VTSVVPIL--HGK--VMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (409)
Q Consensus 253 ~T~v~PV~--dG~--~l~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (409)
.+++..+. -|. ++.+ ..--.+||+++++.|.+.+...
T Consensus 207 ~~q~si~aF~kG~lkvl~t--a~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 207 SYQVSIAAFTKGKLKVLAT--AFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred cceeeeeeeccCcceeeee--ecccccccchHHHHHHHHHHHH
Confidence 99887653 332 3322 2334799999999999888765
No 71
>PRK10854 exopolyphosphatase; Provisional
Probab=94.37 E-value=0.38 Score=50.98 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=31.3
Q ss_pred cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHH
Q 015305 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY 283 (409)
Q Consensus 242 ~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~ 283 (409)
.+++|||||+++|.++-+-+|.+... ...++|.-.+++.
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~~---~S~~lG~vrl~e~ 175 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPILV---ESRRMGCVSFAQL 175 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeEe---EEEecceeeHHhh
Confidence 35899999999999998888876654 5568998877763
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.28 E-value=0.016 Score=61.62 Aligned_cols=49 Identities=14% Similarity=0.492 Sum_probs=43.9
Q ss_pred CcccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhh
Q 015305 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (409)
Q Consensus 36 ~~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (409)
..+.-||.+...+|+++|.+++++++++||++|+.+++|+..|..-+..
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~ 154 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRE 154 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhh
Confidence 3567999999999999999999999999999999999999999844433
No 73
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.95 E-value=0.29 Score=51.45 Aligned_cols=146 Identities=14% Similarity=0.184 Sum_probs=74.4
Q ss_pred ceEEEeCCCCeEEEEEeCCC--CCCccc--ccccccCC---ccchH-HHHHHHHHHHH--H-hhccc-CCCCCCeEEEec
Q 015305 126 GSVIIDGGSGYCKFGWSKYD--CPSGRT--ATFLEFGN---IESPM-YSRLRHFFATI--Y-SRMQV-KPSTQPIVVSIP 193 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~--~P~~~~--~t~~~~G~---~~~Pi-~~~le~~~~~~--~-~~L~v-~p~~~pVll~ep 193 (409)
..-+||+||+++|.=.+--. .++.+. ...+..|+ ....+ .+++++.+..+ | +.+.- .+.+ |.++-.
T Consensus 4 ~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~~~~--v~~vAT 81 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFGAEE--VRVVAT 81 (492)
T ss_pred eEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCCCCE--EEEehh
Confidence 34699999999998777532 233222 12233332 11112 23444433221 2 22221 2222 333321
Q ss_pred CCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeee---ccchHHHHHc----C-CcceEEEEeCCceeEEEEEecCeEe
Q 015305 194 ICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAI---NQATLALYAA----K-RTSGIVVNIGFQVTSVVPILHGKVM 265 (409)
Q Consensus 194 ~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~---~~~vlal~a~----G-~~sglVVDiG~~~T~v~PV~dG~~l 265 (409)
... -++ .++..+.+.+.+. +|.+ +.++ .++-++.+|. + ...++|+|||+++|.++-+-+..+.
T Consensus 82 sA~---R~A--~N~~eFl~rv~~~---~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~ 152 (492)
T COG0248 82 SAL---RDA--PNGDEFLARVEKE---LGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG 152 (492)
T ss_pred HHH---HcC--CCHHHHHHHHHHH---hCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc
Confidence 100 001 2233334333333 7766 3333 4444544443 3 6788999999999999977555554
Q ss_pred ecccEEEEccchhHHHHHHH
Q 015305 266 RKVGVEVMGLGALKLTGYLR 285 (409)
Q Consensus 266 ~~~~~~~~~iGG~~lt~~L~ 285 (409)
. ...+++|+-.+++.+.
T Consensus 153 ~---~~Sl~~G~v~lt~~~~ 169 (492)
T COG0248 153 L---LISLPLGCVRLTERFF 169 (492)
T ss_pred e---eEEeecceEEeehhhc
Confidence 3 4678888776665443
No 74
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=93.16 E-value=1.2 Score=42.93 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=21.1
Q ss_pred CCcEEeccCCCCccHHHHHhhhh
Q 015305 385 KTVILTGGSACLPGLAGIRNSFN 407 (409)
Q Consensus 385 ~NIvLtGG~S~ipGf~eRL~~E~ 407 (409)
++|+++||.+.-+|+.+.|++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l 235 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAI 235 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHh
Confidence 46999999999999999999876
No 75
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=93.05 E-value=0.15 Score=48.75 Aligned_cols=49 Identities=14% Similarity=0.392 Sum_probs=43.8
Q ss_pred cccCCCHHHHHHHHhhcCh-hhhhhhhcchhhhHhhhcChHHHHHHHhhc
Q 015305 37 AFDQIPWDVLIQIVKLIGP-KEAAKLCVVSKSWRALVSDNRLWIFFLQHQ 85 (409)
Q Consensus 37 ~~~~lp~~~~~~i~~~l~p-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (409)
.|..||.++++.||.+|+- .|+--++.|--.-..+.+|..+|+..++-|
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfH 250 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFH 250 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999986 599999999999999999999999766654
No 76
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=1.2 Score=46.93 Aligned_cols=95 Identities=18% Similarity=0.146 Sum_probs=63.0
Q ss_pred CeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEE--EE
Q 015305 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVV--PI 259 (409)
Q Consensus 187 pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~--PV 259 (409)
..+++.|.+.. ...|+. ..-..++ .+-.-+-.++.|.+++.++|. .+-.|-|+|.+..+|. -|
T Consensus 162 ~avvtvpAyfn------dsqRqa-Tkdag~i---agl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei 231 (640)
T KOG0102|consen 162 NAVITVPAYFN------DSQRQA-TKDAGQI---AGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEI 231 (640)
T ss_pred heeeccHHHHh------HHHHHH-hHhhhhh---ccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehh
Confidence 34566665542 344543 3334454 666667778999999999983 3448999999887655 35
Q ss_pred ecCeEeecccEEEEccchhHHHHHHHHHHHhc
Q 015305 260 LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (409)
Q Consensus 260 ~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (409)
.+|...-.......-.||.+++..+..++-..
T Consensus 232 ~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 232 EDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred ccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 77764433133456789999999988876653
No 77
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=90.92 E-value=1.2 Score=37.46 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=41.0
Q ss_pred EEEEeCCceeEEEEEecCeEeecccEEEEccc--------hhHHH--HHHHHHHHhcCCCCCcHHHHHHH-HHhhcccc
Q 015305 245 IVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG--------ALKLT--GYLRLLMQQNNINFGSLYTVRTL-KEKLCYVA 312 (409)
Q Consensus 245 lVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iG--------G~~lt--~~L~~lL~~~~~~~~~~~~ve~i-Ke~~c~v~ 312 (409)
++||+|.+.|.++-..+|..-. +..+++| |.+++ +.+.+-++. ..+.+|++ |.++..+.
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~---~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~------a~~~AE~~~k~~i~~v~ 71 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY---IRVLGVGEVPSKGIKGGHITDIEDISKAIKI------AIEEAERLAKCEIGSVY 71 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE---EEEES----------HHHHH--HHHHHHHT--------HHHHHHH-HHHH--S-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc---EEEEEEecccccccCCCEEEEHHHHHHHHHH------HHHHHHHHhCCeeeEEE
Confidence 6899999999999777766553 4778999 99999 888887775 35678888 87766544
No 78
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=89.47 E-value=4.4 Score=41.00 Aligned_cols=119 Identities=18% Similarity=0.066 Sum_probs=65.0
Q ss_pred CceEEEeCCCCeEEEEEeCCCCCCcccccccccCCccchHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCCCCCcchH
Q 015305 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAK 204 (409)
Q Consensus 125 ~~~VVID~GS~~iKaGfage~~P~~~~~t~~~~G~~~~Pi~~~le~~~~~~~~~L~v~p~~~pVll~ep~~~~~~~~~~~ 204 (409)
.-.+=||.||.++|+-.-.|+. .+..+++..+. -.|. .++.+...+++|+.+..+-.-+.+ +-
T Consensus 135 ~~~LGID~GSTtTK~VLm~d~~--~I~~~~~~~t~-g~p~---~~~~l~~~le~l~~~~~~I~~~~~-----------TG 197 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMEDGK--EILYGFYVSTK-GRPI---AEKALKEALEELGEKLEEILGLGV-----------TG 197 (396)
T ss_pred cEEEEEecCCcceeEEEEeCCC--eEEEEEEEcCC-CChh---HHHHHHHHHHHcccChheeeeeee-----------ec
Confidence 3568899999999998887765 23333322111 1232 344555556667655433222221 12
Q ss_pred HhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCcceEEEEeCCceeEEEEEecCeEee
Q 015305 205 ASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMR 266 (409)
Q Consensus 205 ~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~sglVVDiG~~~T~v~PV~dG~~l~ 266 (409)
.-|+. ....|+....-.-+.--+..|.|=....- .|+|||++-+-++-|-||.+-.
T Consensus 198 YGR~~-----v~~~~~aD~~~~Ei~ah~kgA~~f~p~~d-tIiDIGGQD~K~i~i~dG~v~d 253 (396)
T COG1924 198 YGRNL-----VGAALGADKVVVEISAHAKGARYFAPDVD-TVIDIGGQDSKVIKLEDGKVDD 253 (396)
T ss_pred ccHHH-----hhhhhcCCcceeeeehhHHHHHHhCCCCc-EEEEecCcceeEEEEeCCeeee
Confidence 33432 22222222322333333344444333333 9999999999999999998764
No 79
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=89.41 E-value=0.9 Score=44.15 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=35.3
Q ss_pred CCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHH
Q 015305 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (409)
Q Consensus 240 G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~ 285 (409)
...+++|+|+|+++|.++-+-+|.+... ..+++|.-.+++.+.
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~~~ 152 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVVFS---QSLPLGAVRLTERFF 152 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEEEE---EEES--HHHHHHHHS
T ss_pred ccCCEEEEEECCCceEEEEEECCeeeEe---eeeehHHHHHHHHHh
Confidence 5788999999999999999999988765 789999998887653
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.86 E-value=0.25 Score=50.37 Aligned_cols=41 Identities=17% Similarity=0.498 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHH
Q 015305 40 QIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIF 80 (409)
Q Consensus 40 ~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~ 80 (409)
.||+++++.|.++|.-+-+||.+++|++|+-.|.|-.=|-+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~ 114 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQH 114 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccccee
Confidence 89999999999999999999999999999999999988853
No 81
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=88.72 E-value=0.55 Score=39.09 Aligned_cols=50 Identities=12% Similarity=0.334 Sum_probs=42.4
Q ss_pred cccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhhcCCC
Q 015305 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEP 88 (409)
Q Consensus 37 ~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (409)
.+..+|.+++.-||..++|..|.++-.-|-.. +-.++.||+.|+.++-+.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~ 52 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPE 52 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcC
Confidence 35679999999999999999999999888433 335789999999998865
No 82
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=87.28 E-value=0.71 Score=45.24 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=27.3
Q ss_pred CCeeeeeccchH----HHH-HcCCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 223 VPAVCAINQATL----ALY-AAKRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 223 vpav~~~~~~vl----al~-a~G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
.|.-.+...|.+ +++ ..|..++++||||..+|+|.+|.||.+...
T Consensus 53 ~Pv~ti~SGPaas~~ga~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 53 RPVETILSGPAASVIGAAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp SGGCTB--SSHHHHHHHHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hHHHHhhcCHHHhHhhhhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 444444444443 344 457889999999999999999999998643
No 83
>PRK13321 pantothenate kinase; Reviewed
Probab=82.81 E-value=16 Score=34.96 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.8
Q ss_pred EEEeCCCCeEEEEEeCCC
Q 015305 128 VIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 128 VVID~GS~~iKaGfage~ 145 (409)
+.||+|..++|+|...++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999988654
No 84
>PF13013 F-box-like_2: F-box-like domain
Probab=81.92 E-value=1.9 Score=35.98 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=27.5
Q ss_pred cccCCCHHHHHHHHhhcChhhhhhhhcchh
Q 015305 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSK 66 (409)
Q Consensus 37 ~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~ 66 (409)
.+..||.|++..|+..-.+.++..+..+|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 466799999999999999999999988888
No 85
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=81.54 E-value=9.9 Score=37.13 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=56.7
Q ss_pred HHHHHhh-cCCCeeeeeccchHHHHHcCCcc-----eEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHH
Q 015305 214 FQQVLFD-LNVPAVCAINQATLALYAAKRTS-----GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLL 287 (409)
Q Consensus 214 l~e~lFE-~~vpav~~~~~~vlal~a~G~~s-----glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~l 287 (409)
+.+.+-+ +|+|.---.-++-+|..++=.|- -.++|+|.++|+..-|-....+.. ..+-=+|+-+|-.+..-
T Consensus 100 iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~---iHlAGAG~mVTmlI~sE 176 (332)
T PF08841_consen 100 IADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTA---IHLAGAGNMVTMLINSE 176 (332)
T ss_dssp HHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEE---EEEE-SHHHHHHHHHHH
T ss_pred HHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEE---EEecCCchhhHHHHHHh
Confidence 3344444 99998888889999988875433 368999999999887754433332 33455678888766654
Q ss_pred HHhcCCCCCcHHHHHHHHHh
Q 015305 288 MQQNNINFGSLYTVRTLKEK 307 (409)
Q Consensus 288 L~~~~~~~~~~~~ve~iKe~ 307 (409)
|- +.+.+++|+||+.
T Consensus 177 LG-----l~d~~lAE~IKky 191 (332)
T PF08841_consen 177 LG-----LEDRELAEDIKKY 191 (332)
T ss_dssp CT------S-HHHHHHHHHS
T ss_pred hC-----CCCHHHHHHhhhc
Confidence 33 4457899999975
No 86
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=80.78 E-value=23 Score=32.63 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.2
Q ss_pred EEEeCCCCeEEEEEeCCC
Q 015305 128 VIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 128 VVID~GS~~iKaGfage~ 145 (409)
++||+|...+|.|+-.++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 689999999999998665
No 87
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=80.60 E-value=6.5 Score=39.18 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=77.5
Q ss_pred ceEEEeCCCCeEEEEEeC---------CCCCCcccccc-cccCCccch-----H-------HHHHHHHHHHHHhhcccCC
Q 015305 126 GSVIIDGGSGYCKFGWSK---------YDCPSGRTATF-LEFGNIESP-----M-------YSRLRHFFATIYSRMQVKP 183 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfag---------e~~P~~~~~t~-~~~G~~~~P-----i-------~~~le~~~~~~~~~L~v~p 183 (409)
..|=||+|+.++.+=|+. ...||..+-.. + ..++| + .++++.+...=|..-++.|
T Consensus 6 lSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi---~~rS~i~FTPv~~q~~id~~alk~~v~eeY~~AGi~p 82 (473)
T COG4819 6 LSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDI---SWRSPIFFTPVDKQGGIDEAALKKLVLEEYQAAGIAP 82 (473)
T ss_pred eeeeeeccCceeeeeeeeeEEeecccccccceEEEEecce---eeecceeeeeecccCCccHHHHHHHHHHHHHHcCCCh
Confidence 468899999999998884 23466543210 0 01222 2 2467777655577788888
Q ss_pred CC---CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcC-------Ccce-EEEEeCCc
Q 015305 184 ST---QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK-------RTSG-IVVNIGFQ 252 (409)
Q Consensus 184 ~~---~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G-------~~sg-lVVDiG~~ 252 (409)
++ ..|+++-...- .++.|. ....+-..+=+|-|..---.-+++.|--++| +.++ +=+|||.+
T Consensus 83 esi~sGAvIITGEtAr------k~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGG 155 (473)
T COG4819 83 ESIDSGAVIITGETAR------KRNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGG 155 (473)
T ss_pred hccccccEEEeccccc------cccchH-HHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCC
Confidence 64 46777743211 011222 1222222211122211111112233333333 3444 55899999
Q ss_pred eeEEEEEecCeEeecccEEEEccchhHH
Q 015305 253 VTSVVPILHGKVMRKVGVEVMGLGALKL 280 (409)
Q Consensus 253 ~T~v~PV~dG~~l~~~~~~~~~iGG~~l 280 (409)
+|...-+-.|.+... ..+++||+.+
T Consensus 156 TtN~slFD~Gkv~dT---aCLdiGGRLi 180 (473)
T COG4819 156 TTNYSLFDAGKVSDT---ACLDIGGRLI 180 (473)
T ss_pred ccceeeecccccccc---eeeecCcEEE
Confidence 999998888888765 4489999843
No 88
>PRK13324 pantothenate kinase; Reviewed
Probab=80.27 E-value=43 Score=32.31 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.3
Q ss_pred EEEeCCCCeEEEEEeCCC
Q 015305 128 VIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 128 VVID~GS~~iKaGfage~ 145 (409)
+.||+|..++|.|+..++
T Consensus 3 L~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 3 LVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEeCCCceEEEEEECC
Confidence 789999999999987543
No 89
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=76.39 E-value=50 Score=32.18 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=35.9
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.+++-++++|- +..+.++|.+|.+. -...|.+|.+++.
T Consensus 97 ~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 97 VGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 8998 88999988887742 45788999999877 5666789998874
No 90
>PRK13318 pantothenate kinase; Reviewed
Probab=75.26 E-value=54 Score=31.30 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.2
Q ss_pred EEEeCCCCeEEEEEeCC
Q 015305 128 VIIDGGSGYCKFGWSKY 144 (409)
Q Consensus 128 VVID~GS~~iKaGfage 144 (409)
+.||+|...+|+|+..+
T Consensus 3 L~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEECCCcEEEEEEEC
Confidence 78999999999998864
No 91
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=73.98 E-value=39 Score=32.15 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.3
Q ss_pred EEEeCCCCeEEEEEeCCC
Q 015305 128 VIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 128 VVID~GS~~iKaGfage~ 145 (409)
++||+|..++|+|+-.++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999977554
No 92
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=68.12 E-value=25 Score=33.75 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=16.4
Q ss_pred EEEeCCCCeEEEEEeCCCC
Q 015305 128 VIIDGGSGYCKFGWSKYDC 146 (409)
Q Consensus 128 VVID~GS~~iKaGfage~~ 146 (409)
++||+|..+++.|+-.+..
T Consensus 3 L~iDiGNT~~~~a~~~~~~ 21 (251)
T COG1521 3 LLIDIGNTRIVFALYEGGK 21 (251)
T ss_pred EEEEeCCCeEEEEEecCCe
Confidence 7899999999999987543
No 93
>PRK13320 pantothenate kinase; Reviewed
Probab=63.89 E-value=99 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.2
Q ss_pred eEEEeCCCCeEEEEEeCCC
Q 015305 127 SVIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~ 145 (409)
-+.||+|..++|.|+-.++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 3789999999999987644
No 94
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=56.33 E-value=1.1e+02 Score=29.62 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=35.4
Q ss_pred cCCCeeeeeccchHHHHHcC-------CcceEEEEeCCceeEEEEEecCeEe
Q 015305 221 LNVPAVCAINQATLALYAAK-------RTSGIVVNIGFQVTSVVPILHGKVM 265 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~G-------~~sglVVDiG~~~T~v~PV~dG~~l 265 (409)
.+... .+.+...+|++++- ....+|||||.+.|-..-|.+|++.
T Consensus 140 ~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 140 AGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred CCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 44444 78888888877763 5678999999999999999999876
No 95
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=55.87 E-value=9.4 Score=30.78 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=23.4
Q ss_pred CcccCCCHHHHHHHHhhcChhhhhhh
Q 015305 36 GAFDQIPWDVLIQIVKLIGPKEAAKL 61 (409)
Q Consensus 36 ~~~~~lp~~~~~~i~~~l~p~~~~~~ 61 (409)
.-+..||.|+...||..|+-.|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 35789999999999999999999876
No 96
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=55.75 E-value=1.9 Score=42.67 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=45.8
Q ss_pred cccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhhcC
Q 015305 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQ 86 (409)
Q Consensus 37 ~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (409)
.++-+|-+++..+++|+.++++.+.+.|++....+.+-..+|+-|+..+.
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 46788999999999999999999999999999999999999998876654
No 97
>PF00286 Flexi_CP: Viral coat protein; InterPro: IPR000052 Potexviruses and Carlaviruses are plant-infecting viruses whose genome consist of a single-stranded RNA molecule encapsided in a coat protein. The genome of many Potexviruses is known and their coat protein sequence has been shown to be rather well conserved []. The same observation applies to the coat protein of a variety of Carlaviruses whose sequences are related to those of Potexviruses [, ]. The coat proteins of Potexviruses and of Carlaviruses contain from 190 to 300 amino acid residues. The best conserved region of these coat proteins is located in the central part.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 4DOX_B.
Probab=55.13 E-value=7.4 Score=34.00 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=34.9
Q ss_pred CCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhhcCCC--CcccccccccccCC
Q 015305 41 IPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEP--WDSIFFGETTLGSG 102 (409)
Q Consensus 41 lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~ 102 (409)
...|+...|. ++.|-|+.+|+|+-- ..|++.+.+..|| |...=|.|..-=+.
T Consensus 60 ~~~~la~aii-----k~~~tLRqfC~~yA~-----vvWN~ml~~n~PPanW~~~gf~~~~KfAA 113 (140)
T PF00286_consen 60 IRADLAAAII-----KEHCTLRQFCRYYAK-----VVWNYMLVNNQPPANWAAKGFKEETKFAA 113 (140)
T ss_dssp BHHHHH-HHH-----HHTTSHHHHHHCTHH-----HHHHHHTTTS---TTTTTTT--GGGGGG-
T ss_pred cHHHHHHHHH-----HccCCHHHHHHHHhH-----hccHHHHHcCCCchhhHHcCCCcccceee
Confidence 3445555665 588999999999986 5799999999988 98888877754333
No 98
>PRK13326 pantothenate kinase; Reviewed
Probab=48.72 E-value=2.3e+02 Score=27.29 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.7
Q ss_pred eEEEeCCCCeEEEEEeCCC
Q 015305 127 SVIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~ 145 (409)
-++||+|..++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 4899999999999998765
No 99
>PF13941 MutL: MutL protein
Probab=48.22 E-value=41 Score=35.24 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=53.0
Q ss_pred CCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeee---------eeccc--hH---HHHHc-CCcceEEEE
Q 015305 184 STQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVC---------AINQA--TL---ALYAA-KRTSGIVVN 248 (409)
Q Consensus 184 ~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~---------~~~~~--vl---al~a~-G~~sglVVD 248 (409)
...+++++++..--.+.++....|+.+.+.+.+..- +.|.+. +++.| ++ -+++- +...-+|||
T Consensus 177 ~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii--~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVD 254 (457)
T PF13941_consen 177 AGKEVVITENVMPKIDVLNVEPAREAIREVFLRHII--QAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVD 254 (457)
T ss_pred CCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHh--cCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEE
Confidence 356788888765444677888888877766655443 333222 23333 22 23444 567789999
Q ss_pred eCCceeEEEEEecCeEee
Q 015305 249 IGFQVTSVVPILHGKVMR 266 (409)
Q Consensus 249 iG~~~T~v~PV~dG~~l~ 266 (409)
||+.+|+|-.|.+|.+-.
T Consensus 255 IGGATTDVhSv~~~~~~~ 272 (457)
T PF13941_consen 255 IGGATTDVHSVAEGSPEI 272 (457)
T ss_pred ccCcccchhhhccCCccc
Confidence 999999999999665543
No 100
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=47.07 E-value=33 Score=35.85 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=48.5
Q ss_pred CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCee---------eeeccchH-----HHHHcCC------cce
Q 015305 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAV---------CAINQATL-----ALYAAKR------TSG 244 (409)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav---------~~~~~~vl-----al~a~G~------~sg 244 (409)
+.++.++++..-..+.+++...|+.+.+.+.+.+- +.|.+ -+.+.|-+ -+++-|. ..-
T Consensus 174 ~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv--~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~l 251 (463)
T TIGR01319 174 DIFYRITDNVLPDLDHLNPEAAREAICDIFLKKIV--EAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDF 251 (463)
T ss_pred CceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHh--cCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCE
Confidence 34566777655444677777888877766555442 22222 22232221 2334433 346
Q ss_pred EEEEeCCceeEEEEEecCeEe
Q 015305 245 IVVNIGFQVTSVVPILHGKVM 265 (409)
Q Consensus 245 lVVDiG~~~T~v~PV~dG~~l 265 (409)
++||||+.+|+|-.+.+|..-
T Consensus 252 l~VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 252 ILIDIGGATTDVHSAAAGELS 272 (463)
T ss_pred EEEEcCccccchhhccCCCcc
Confidence 999999999999999999554
No 101
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.65 E-value=25 Score=38.67 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCCeeeeeccchH----HHHHcCCcc--eEEEEeCCceeEEEEEecCeEeec
Q 015305 222 NVPAVCAINQATL----ALYAAKRTS--GIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 222 ~vpav~~~~~~vl----al~a~G~~s--glVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+.|.-.+...|.. ++|-+|+.. ++++|+|..+|++.-|.+|.+-..
T Consensus 252 ~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~~ 303 (674)
T COG0145 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEIS 303 (674)
T ss_pred cCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeecCcEEee
Confidence 3444444444433 444457777 999999999999999988876543
No 102
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=39.74 E-value=1.3e+02 Score=28.68 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=36.1
Q ss_pred cCCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcC
Q 015305 239 AKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN 292 (409)
Q Consensus 239 ~G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~ 292 (409)
+|.++.+|+=+..+.|+|+...+.+---- -..++++=-.+-+.+.+.|+-.+
T Consensus 121 TgA~nPvvLYvSGGNTQvIAYse~rYrIF--GETlDIAvGNClDRFAR~lklsN 172 (336)
T KOG2708|consen 121 TGAQNPVVLYVSGGNTQVIAYSEKRYRIF--GETLDIAVGNCLDRFARVLKLSN 172 (336)
T ss_pred ccCCCCEEEEEeCCceEEEEEccceeeee--cceehhhhhhhHHHHHHHhcCCC
Confidence 46688899999999999999988853321 25677774445555566666544
No 103
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=35.53 E-value=3.9e+02 Score=25.27 Aligned_cols=123 Identities=18% Similarity=0.150 Sum_probs=64.7
Q ss_pred EEeCCCCeEEEEEeCCCCCCccccccc-ccCCccc-hHH---HHHHHHHHHHHhhcccCCCCCCeE-EEecCCCCCCCcc
Q 015305 129 IIDGGSGYCKFGWSKYDCPSGRTATFL-EFGNIES-PMY---SRLRHFFATIYSRMQVKPSTQPIV-VSIPICHYDDTEN 202 (409)
Q Consensus 129 VID~GS~~iKaGfage~~P~~~~~t~~-~~G~~~~-Pi~---~~le~~~~~~~~~L~v~p~~~pVl-l~ep~~~~~~~~~ 202 (409)
=||.|+..||+-...++.- +..... +-.|+.. .+. +.++..++.++++++.++.+-..+ +.-.-+- .
T Consensus 2 GIDgGgTkt~~vl~d~~g~--il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG~~-----~ 74 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDENGN--ILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAGYG-----R 74 (271)
T ss_dssp EEEECSSEEEEEEEETTSE--EEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEEEE-----E
T ss_pred EEeeChheeeeEEEeCCCC--EEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEeeec-----C
Confidence 3899999999887765421 111111 1112221 122 234555666777777776665533 2222111 0
Q ss_pred hHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCcceEEEEeCCceeEEEEEe-cCeEeec
Q 015305 203 AKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPIL-HGKVMRK 267 (409)
Q Consensus 203 ~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~sglVVDiG~~~T~v~PV~-dG~~l~~ 267 (409)
+. .++++.+.+.. + .+.+.+++..++++... ..-||+||...+.+.-+- +|.+...
T Consensus 75 ~~-~~~~~~~~~~~---~----~v~~~~Da~~al~~~~~-~~giv~I~GTGS~~~~~~~~g~~~r~ 131 (271)
T PF01869_consen 75 AG-DEQEFQEEIVR---S----EVIVVNDAAIALYGATA-EDGIVVIAGTGSIAYGRDRDGRVIRF 131 (271)
T ss_dssp TT-TTTHHHHHHHH---H----EEEEEEHHHHHHHHHST-SSEEEEEESSSEEEEEEETTSEEEEE
T ss_pred cc-cccchhhcceE---E----EEEEEHHHHHHhCCCCC-CcEEEEEcCCCceEEEEEcCCcEEEe
Confidence 11 11112111221 1 78899999999988766 445555555556666666 7776653
No 104
>PRK13331 pantothenate kinase; Reviewed
Probab=32.26 E-value=4.6e+02 Score=25.15 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=17.1
Q ss_pred ceEEEeCCCCeEEEEEeCCC
Q 015305 126 GSVIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~ 145 (409)
.-++||+|..++++|+-.++
T Consensus 8 ~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred cEEEEEeCCCcEEEEEEECC
Confidence 45999999999999987654
No 105
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=28.14 E-value=42 Score=34.55 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=23.4
Q ss_pred hhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 382 AWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 382 ~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
.+-..|+++||.+.-+|+.+.|+++++
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~ 406 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIK 406 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHc
Confidence 355789999999999999999988874
No 106
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=26.99 E-value=6.6e+02 Score=25.27 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred ceEEEEeCCceeEEEEEecCeEeec
Q 015305 243 SGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 243 sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+-+++.+|.+.+ ++.|.+|+++..
T Consensus 175 ~~I~~hLGtGig-~~ai~~Gk~vdg 198 (351)
T TIGR02707 175 NLIVAHMGGGIS-VAAHRKGRVIDV 198 (351)
T ss_pred CEEEEEeCCCce-eeeEECCEEEEc
Confidence 789999998877 888999999875
No 107
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=25.98 E-value=36 Score=34.58 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=19.7
Q ss_pred CCcEEeccCCCCccHHHHHhhhhc
Q 015305 385 KTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 385 ~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
..|++|||++.=+-|.+||++.++
T Consensus 286 ~~v~v~GGGa~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 286 DEVYVCGGGARNPFLMERLQERLP 309 (364)
T ss_dssp EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred ceEEEECCCcCCHHHHHHHHhhCC
Confidence 469999999999999999998764
No 108
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=25.44 E-value=1.1e+02 Score=30.90 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.9
Q ss_pred cCCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 239 AKRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 239 ~G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+...+-++||+|++.|.++.|-+|.++..
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDG 179 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDG 179 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEcc
Confidence 44668999999999999999999999975
No 109
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=22.08 E-value=7.1e+02 Score=23.88 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=33.8
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| |++.++.-+++++- +..+.+.|.+|.+.= ..-|.+|.+++.
T Consensus 96 ~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG-~giv~~G~l~~G 147 (303)
T PRK13310 96 LGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVG-GGLVFNGKPISG 147 (303)
T ss_pred HCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCceE-EEEEECCEEeeC
Confidence 8998 88999888877542 246778899997654 555779998865
No 110
>PRK13317 pantothenate kinase; Provisional
Probab=20.97 E-value=65 Score=31.36 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=31.4
Q ss_pred CchHHHHHHHHhcCCCCCccchHhhcCCcEEec-cCCCCccHHHHHhhhhc
Q 015305 359 MGLDQAVALCMDHCHYAELSGDDAWFKTVILTG-GSACLPGLAGIRNSFNK 408 (409)
Q Consensus 359 ~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtG-G~S~ipGf~eRL~~E~k 408 (409)
.||..+|.+.|..... -. .|..-.++|+++| |.+..|++.++|.+.++
T Consensus 200 asl~~~v~~~I~~lA~-~~-ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~ 248 (277)
T PRK13317 200 AGVIGLVGEVITTLSI-QA-AREKNIENIVYIGSTLTNNPLLQEIIESYTK 248 (277)
T ss_pred HHHHHHHHHHHHHHHH-HH-HHhcCCCeEEEECcccccCHHHHHHHHHHHh
Confidence 4566666665554321 00 0223347899999 79999999999987663
Done!