Query 015305
Match_columns 409
No_of_seqs 239 out of 1724
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb0_A Actin-related protein 4 100.0 1.5E-59 5E-64 485.6 25.9 277 116-408 16-438 (498)
2 3dwl_A Actin-related protein 3 100.0 6.2E-59 2.1E-63 475.1 17.3 270 126-409 6-352 (427)
3 1k8k_B ARP2, actin-like protei 100.0 1.5E-53 5.2E-58 431.5 15.5 269 126-408 7-322 (394)
4 2fxu_A Alpha-actin-1, actin, a 100.0 5E-52 1.7E-56 417.6 22.9 270 125-408 5-318 (375)
5 4fo0_A Actin-related protein 8 100.0 3.9E-52 1.3E-56 441.2 18.4 231 165-408 174-525 (593)
6 1k8k_A ARP3, actin-like protei 100.0 1E-47 3.5E-52 391.0 25.2 268 126-408 6-340 (418)
7 4am6_A Actin-like protein ARP8 100.0 8.2E-37 2.8E-41 319.3 15.9 226 165-404 196-521 (655)
8 1jce_A ROD shape-determining p 99.9 1.7E-25 6E-30 221.1 18.2 253 126-408 4-302 (344)
9 2v7y_A Chaperone protein DNAK; 99.7 1E-16 3.5E-21 166.8 18.3 246 126-408 3-327 (509)
10 3h1q_A Ethanolamine utilizatio 99.7 2.2E-16 7.6E-21 150.4 18.0 217 126-408 29-251 (272)
11 1dkg_D Molecular chaperone DNA 99.7 5E-16 1.7E-20 155.3 16.4 196 185-408 135-358 (383)
12 3l2o_B F-box only protein 4; s 99.7 3.3E-17 1.1E-21 156.9 3.8 61 35-95 2-62 (312)
13 3qfu_A 78 kDa glucose-regulate 99.6 9.6E-15 3.3E-19 146.1 18.9 189 185-407 153-367 (394)
14 3i33_A Heat shock-related 70 k 99.6 3.3E-14 1.1E-18 143.0 16.9 189 185-407 158-375 (404)
15 1yuw_A Heat shock cognate 71 k 99.4 1.3E-11 4.4E-16 129.7 20.5 187 186-407 140-354 (554)
16 2kho_A Heat shock protein 70; 99.4 8E-12 2.7E-16 132.6 18.5 187 186-407 136-357 (605)
17 2ych_A Competence protein PILM 99.4 4.1E-12 1.4E-16 126.5 15.4 162 221-408 163-331 (377)
18 3d2f_A Heat shock protein homo 99.3 3.9E-11 1.3E-15 128.7 18.2 186 186-407 139-358 (675)
19 4gni_A Putative heat shock pro 99.3 8.2E-11 2.8E-15 118.5 17.4 189 185-407 150-368 (409)
20 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 8.1E-12 2.8E-16 89.6 3.4 46 36-81 7-52 (53)
21 4b9q_A Chaperone protein DNAK; 99.1 7.1E-10 2.4E-14 117.6 16.1 188 186-407 136-357 (605)
22 4a2a_A Cell division protein F 99.1 6.4E-10 2.2E-14 112.9 14.5 173 211-408 170-353 (419)
23 2fsj_A Hypothetical protein TA 98.9 1.5E-09 5.1E-14 107.3 8.9 99 186-291 120-240 (346)
24 2e31_A FBS1, F-box only protei 98.8 3.1E-09 1E-13 102.6 5.7 51 35-85 48-99 (297)
25 2zgy_A Plasmid segregation pro 98.6 2.7E-07 9.3E-12 89.8 11.7 85 221-307 138-229 (320)
26 3js6_A Uncharacterized PARM pr 98.5 7.1E-08 2.4E-12 95.7 4.9 68 223-291 154-232 (355)
27 2ovr_B FBW7, F-BOX/WD repeat p 98.4 1.8E-07 6.2E-12 93.4 5.2 51 35-85 16-66 (445)
28 1p22_A F-BOX/WD-repeat protein 98.3 6.8E-08 2.3E-12 96.5 0.7 51 36-86 9-63 (435)
29 3v7d_B Cell division control p 98.3 2.2E-07 7.4E-12 92.9 3.8 52 35-86 12-64 (464)
30 4apw_A ALP12; actin-like prote 98.3 2.9E-07 9.8E-12 90.3 4.1 67 223-290 149-219 (329)
31 1nbw_A Glycerol dehydratase re 98.3 2.5E-06 8.5E-11 87.8 10.5 74 230-312 392-470 (607)
32 2d0o_A DIOL dehydratase-reacti 98.2 2.3E-06 7.9E-11 87.8 9.2 74 230-312 390-468 (610)
33 2ast_B S-phase kinase-associat 97.8 7.2E-06 2.5E-10 78.9 2.4 47 35-81 6-52 (336)
34 2p1m_B Transport inhibitor res 96.5 0.00087 3E-08 69.2 2.3 35 37-71 5-40 (594)
35 1t6c_A Exopolyphosphatase; alp 96.1 0.035 1.2E-06 53.6 11.3 42 241-285 137-178 (315)
36 3cet_A Conserved archaeal prot 96.0 0.018 6E-07 56.0 8.4 125 128-267 3-152 (334)
37 3mdq_A Exopolyphosphatase; str 95.8 0.03 1E-06 54.1 9.1 40 242-284 131-170 (315)
38 3hi0_A Putative exopolyphospha 95.6 0.073 2.5E-06 54.9 11.5 140 126-283 16-178 (508)
39 4ehu_A Activator of 2-hydroxyi 95.5 0.0042 1.4E-07 58.5 1.8 64 226-289 74-141 (276)
40 3ogk_B Coronatine-insensitive 94.8 0.0076 2.6E-07 62.1 1.5 32 40-71 15-47 (592)
41 3cer_A Possible exopolyphospha 94.7 0.13 4.6E-06 50.1 10.0 62 221-284 115-191 (343)
42 1u6z_A Exopolyphosphatase; alp 94.7 0.31 1.1E-05 50.2 13.2 67 214-284 101-176 (513)
43 3aap_A Ectonucleoside triphosp 94.3 0.12 4.2E-06 50.7 8.8 145 126-278 4-177 (353)
44 3zx3_A Ectonucleoside triphosp 85.1 5.8 0.0002 40.0 11.2 134 127-263 36-202 (452)
45 3cj1_A Ectonucleoside triphosp 84.5 5.1 0.00017 40.5 10.6 22 242-263 190-211 (456)
46 2h3g_X Biosynthetic protein; p 83.6 11 0.00039 35.0 12.0 18 128-145 3-20 (268)
47 3djc_A Type III pantothenate k 82.4 17 0.00058 33.8 12.6 19 127-145 4-22 (266)
48 2qm1_A Glucokinase; alpha-beta 79.9 22 0.00075 33.2 12.8 45 221-267 108-159 (326)
49 3bex_A Type III pantothenate k 77.8 29 0.001 31.7 12.5 25 241-266 121-145 (249)
50 3vgl_A Glucokinase; ROK family 71.5 55 0.0019 30.6 13.0 45 221-267 96-147 (321)
51 1z6r_A MLC protein; transcript 69.7 47 0.0016 32.2 12.5 129 126-267 86-237 (406)
52 2i7n_A Pantothenate kinase 1; 69.0 19 0.00065 35.1 9.2 142 244-407 177-330 (360)
53 1z05_A Transcriptional regulat 68.9 45 0.0015 32.7 12.2 45 221-267 208-259 (429)
54 2ews_A Pantothenate kinase; PA 68.8 4.3 0.00015 38.4 4.4 43 243-289 111-153 (287)
55 2yhw_A Bifunctional UDP-N-acet 65.1 50 0.0017 31.1 11.3 45 221-267 131-182 (343)
56 3vov_A Glucokinase, hexokinase 63.2 93 0.0032 28.8 12.7 45 221-267 98-149 (302)
57 1zbs_A Hypothetical protein PG 62.1 96 0.0033 28.4 12.6 46 221-266 86-133 (291)
58 4hfx_A Transcription elongatio 61.2 2.5 8.6E-05 33.4 1.0 47 41-89 13-59 (97)
59 1zc6_A Probable N-acetylglucos 57.9 1.2E+02 0.0039 28.0 12.5 125 127-266 13-146 (305)
60 4db3_A Glcnac kinase, N-acetyl 56.3 1.3E+02 0.0044 28.1 12.7 45 221-267 120-171 (327)
61 2hoe_A N-acetylglucosamine kin 55.9 81 0.0028 30.2 11.1 45 221-267 188-237 (380)
62 4am6_A Actin-like protein ARP8 54.6 5.5 0.00019 41.9 2.5 25 126-150 41-65 (655)
63 2ch5_A NAGK protein; transfera 50.4 1.6E+02 0.0055 27.4 13.5 128 127-265 8-144 (347)
64 1hux_A Activator of (R)-2-hydr 48.1 88 0.003 28.6 9.5 25 384-408 209-233 (270)
65 2f9w_A Pantothenate kinase; CO 44.2 74 0.0025 29.5 8.3 17 127-143 25-41 (271)
66 2kwv_A RAD30 homolog B, DNA po 43.9 8.4 0.00029 25.9 1.2 22 37-58 20-41 (48)
67 2ap1_A Putative regulator prot 43.9 2E+02 0.0067 26.6 13.3 45 221-267 120-171 (327)
68 4dox_A Coat protein; all helix 39.1 12 0.00042 33.9 1.9 50 39-99 85-137 (226)
69 1saz_A Probable butyrate kinas 38.2 2.1E+02 0.007 27.5 10.9 24 243-267 177-200 (381)
70 2gup_A ROK family protein; sug 37.0 63 0.0021 29.5 6.6 45 221-267 94-143 (292)
71 4htl_A Beta-glucoside kinase; 35.2 2.6E+02 0.0089 25.5 12.6 45 221-267 97-148 (297)
72 2aa4_A Mannac kinase, putative 29.1 1.2E+02 0.0041 27.4 7.2 44 221-267 96-146 (289)
73 1vhx_A Putative holliday junct 24.3 2.5E+02 0.0086 23.2 7.6 19 126-144 4-22 (150)
74 2qyp_A Proactivator polypeptid 22.8 43 0.0015 25.2 2.3 28 43-70 59-86 (91)
75 3htv_A D-allose kinase, alloki 22.3 4.5E+02 0.016 24.0 11.5 45 221-267 107-157 (310)
76 3r8e_A Hypothetical sugar kina 20.5 2E+02 0.0069 26.6 7.0 45 221-267 117-169 (321)
77 3djc_A Type III pantothenate k 20.4 2.6E+02 0.009 25.5 7.6 47 244-293 4-53 (266)
No 1
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-59 Score=485.63 Aligned_cols=277 Identities=21% Similarity=0.362 Sum_probs=241.9
Q ss_pred cccCCCCCCCceEEEeCCCCeEEEEEeCCCCCCcccccccc-----------cCC-----------ccchH-------HH
Q 015305 116 HIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------FGN-----------IESPM-------YS 166 (409)
Q Consensus 116 ~~y~~~~~~~~~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------~G~-----------~~~Pi-------~~ 166 (409)
.+|+++++ .+||||+||++|||||||++.|+.++|++++ +|+ +.+|+ |+
T Consensus 16 ~~yggde~--~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dwd 93 (498)
T 3qb0_A 16 QVYGGDEV--SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWD 93 (498)
T ss_dssp ---CCCCB--SCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGGGSCCTTEEEEESEETTEESCHH
T ss_pred cccCCCCC--CeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHHhcCcCceEEeccCcCCEEccHH
Confidence 57999998 8899999999999999999999999988653 453 24676 89
Q ss_pred HHHHHHHHHHh-hcccCCCCC-CeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcc
Q 015305 167 RLRHFFATIYS-RMQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTS 243 (409)
Q Consensus 167 ~le~~~~~~~~-~L~v~p~~~-pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~s 243 (409)
.++++|+++|. .|+++|.++ ||||+||++++ +..|++ +.|++|| ||+|+++++++++||+||+|+++
T Consensus 94 ~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~------~~~Re~----~~eilFE~f~vpav~l~~~~vlalya~G~~t 163 (498)
T 3qb0_A 94 TAQEQWQWALQNELYLNSNSGIPALLTEPVWNS------TENRKK----SLEVLLEGMQFEACYLAPTSTCVSFAAGRPN 163 (498)
T ss_dssp HHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCC------HHHHHH----HHHHHHTTSCCSEEEEEEHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhhhCCCcccCCceEEEeCCCCc------HHHHHH----HHHHHHhhcCCCeEeecchHHHHHHHcCCCe
Confidence 99999999885 599999999 99999999864 666654 6778888 99999999999999999999999
Q ss_pred eEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcC------------------CCCC---------
Q 015305 244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN------------------INFG--------- 296 (409)
Q Consensus 244 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~------------------~~~~--------- 296 (409)
|+|||+|++.|+|+||++|+++.+ ++.++++||+++|++|.++|+.++ +.+.
T Consensus 164 glVVDiG~g~T~vvPI~~G~~l~~-ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~ 242 (498)
T 3qb0_A 164 CLVVDIGHDTCSVSPIVDGMTLSK-STRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYA 242 (498)
T ss_dssp EEEEEECSSCEEEEEEETTEECGG-GCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHH
T ss_pred EEEEEcCCCcEEEEEEeCCEEccc-cceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHH
Confidence 999999999999999999999998 899999999999999999998652 2221
Q ss_pred -cHHHHHHHHHhhcccccc--hHHhh---hccccceEEeCCCcEEEecce-eeccccccccCCcCCc-------------
Q 015305 297 -SLYTVRTLKEKLCYVAAD--YKAEL---SKDTQASLEIAGEGWFTLSKE-RFQTGEILFQPRMADV------------- 356 (409)
Q Consensus 297 -~~~~ve~iKe~~c~v~~d--~~~e~---~~~~~~~y~Lpdg~~i~l~~e-rf~~~E~LF~P~~~g~------------- 356 (409)
..+++++|||++|||+.| ++++. .....+.|+||||+.|.+++| ||.+||.||+|+++|.
T Consensus 243 ~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~ 322 (498)
T 3qb0_A 243 NNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVK 322 (498)
T ss_dssp HHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCC
T ss_pred HHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccc
Confidence 123799999999999987 55542 233567899999999999999 9999999999987654
Q ss_pred -------------------------------------------------------------------cCCchHHHHHHHH
Q 015305 357 -------------------------------------------------------------------RTMGLDQAVALCM 369 (409)
Q Consensus 357 -------------------------------------------------------------------~~~gL~~~I~~sI 369 (409)
+..||+++|.+||
T Consensus 323 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI 402 (498)
T 3qb0_A 323 TWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSI 402 (498)
T ss_dssp CCSCCCCCCCBCC-----------------------------------------------------CCSCCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHH
Confidence 5679999999999
Q ss_pred hcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 370 DHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 370 ~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
++|++ |+ |++|++||||+||+|++|||.+||++||+
T Consensus 403 ~~cd~-d~--r~~L~~nIvLsGGst~~pGf~~Rl~~El~ 438 (498)
T 3qb0_A 403 MSSDV-DL--RATLAHNVVLTGGTSSIPGLSDRLMTELN 438 (498)
T ss_dssp HTSCT-TT--HHHHHTTEEEESGGGGSTTHHHHHHHHHH
T ss_pred HhCCH-HH--HHHHhcCEEEeCCccCchhHHHHHHHHHH
Confidence 99999 98 89999999999999999999999999986
No 2
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-59 Score=475.08 Aligned_cols=270 Identities=25% Similarity=0.422 Sum_probs=230.2
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc---------------------------------------cCC-------
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE---------------------------------------FGN------- 159 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~---------------------------------------~G~------- 159 (409)
++||||+||++|||||||++.|+.++|++++ +|+
T Consensus 6 ~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~ 85 (427)
T 3dwl_A 6 VPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKAS 85 (427)
T ss_dssp SCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHHTHH
T ss_pred CeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhhCcc
Confidence 6899999999999999999999999988652 121
Q ss_pred ----ccchH-------HHHHHHHHHHHH-hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCee
Q 015305 160 ----IESPM-------YSRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAV 226 (409)
Q Consensus 160 ----~~~Pi-------~~~le~~~~~~~-~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav 226 (409)
+.+|+ ||.++++|+++| +.|+++|.+|||||+||++++ +..|++ +.|++|| ||+|++
T Consensus 86 ~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~------~~~re~----~~ei~FE~~~~p~v 155 (427)
T 3dwl_A 86 AGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP------PENREN----TAEIMFESFNCAGL 155 (427)
T ss_dssp HHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCC------HHHHHH----HHHHHTTTTCCSEE
T ss_pred cCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCC------HHHHHH----HHHHHHHhccCcee
Confidence 34676 899999998776 679999999999999999864 666654 7788888 999999
Q ss_pred eeeccchHHHHHcC--------CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcH
Q 015305 227 CAINQATLALYAAK--------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSL 298 (409)
Q Consensus 227 ~~~~~~vlal~a~G--------~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~ 298 (409)
+++.+++||+||+| .+||+|||+|++.|+|+||++|+++.+ +++++++||+++|++|.++|+.++....+.
T Consensus 156 ~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~-~~~rl~~gG~~lt~~L~~lL~~~~~~~~~~ 234 (427)
T 3dwl_A 156 YIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGS-SIKTMPLAGRDVTYFVQSLLRDRNEPDSSL 234 (427)
T ss_dssp EEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHTTC--------C
T ss_pred eecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehh-hheeccccHHHHHHHHHHHHHHcCCCchhH
Confidence 99999999999999 689999999999999999999999998 899999999999999999999988765567
Q ss_pred HHHHHHHHhhcccccchHHhhhcc-----ccceEEe--CCCc--EEEecceeeccccccccCCcCCcc-CCchHHHHHHH
Q 015305 299 YTVRTLKEKLCYVAADYKAELSKD-----TQASLEI--AGEG--WFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALC 368 (409)
Q Consensus 299 ~~ve~iKe~~c~v~~d~~~e~~~~-----~~~~y~L--pdg~--~i~l~~erf~~~E~LF~P~~~g~~-~~gL~~~I~~s 368 (409)
+++|+|||++|||+.|+++++... ..+.|++ |||+ .++++.|||.+||+||+|+++|.+ ..||+++|.++
T Consensus 235 ~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~s 314 (427)
T 3dwl_A 235 KTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNV 314 (427)
T ss_dssp HHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHH
T ss_pred HHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHH
Confidence 899999999999999998876532 2356778 8887 788999999999999999999988 48999999999
Q ss_pred HhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhcC
Q 015305 369 MDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNKQ 409 (409)
Q Consensus 369 I~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k~ 409 (409)
|++||+ |+ |++|++|||||||+|++|||.+||++|+++
T Consensus 315 I~~c~~-dl--r~~L~~nIvLtGG~sl~~G~~~RL~~El~~ 352 (427)
T 3dwl_A 315 VQSSPI-DV--RKGLYKNIVLSGGSTLFKNFGNRLQRDLKR 352 (427)
T ss_dssp HHTSCH-HH--HHHHHHCEEEESGGGCSTTTTHHHHHHHHH
T ss_pred HHhCCH-HH--HHHHhCCEEEEccCcCCCChHHHHHHHHHH
Confidence 999999 98 899999999999999999999999999863
No 3
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=1.5e-53 Score=431.54 Aligned_cols=269 Identities=25% Similarity=0.466 Sum_probs=149.2
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc-------------------cCC----------ccchH-------HHHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------FGN----------IESPM-------YSRLR 169 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~-------------------~G~----------~~~Pi-------~~~le 169 (409)
++||||+||++||+||+|++.|+.++|++++ +|+ +.+|+ |+.++
T Consensus 7 ~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dwd~~e 86 (394)
T 1k8k_B 7 KVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMK 86 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEecHHHHH
Confidence 6899999999999999999999998887542 232 34677 67889
Q ss_pred HHHHHHH--hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEE
Q 015305 170 HFFATIY--SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIV 246 (409)
Q Consensus 170 ~~~~~~~--~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglV 246 (409)
.+|+++| +.|+++|.++||++++|++++ ...|++ +.|++|| ||+|++++++++++|+||+|+++|+|
T Consensus 87 ~i~~~~~~~~~L~~~~~~~~vllt~p~~~~------~~~r~~----~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lV 156 (394)
T 1k8k_B 87 HLWDYTFGPEKLNIDTRNCKILLTEPPMNP------TKNREK----IVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVV 156 (394)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred HHHHHHhcccccCcCCCCCcEEEEECCCCC------HHHHHH----HHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEE
Confidence 9999988 679999999999999998763 566655 5677777 99999999999999999999999999
Q ss_pred EEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhhhc--
Q 015305 247 VNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSK-- 321 (409)
Q Consensus 247 VDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~~~-- 321 (409)
||+|+++|+|+||++|+++.+ ++.++++||+++|++|.++|..+++++. +.+.+|+||+++||++.|+..+++.
T Consensus 157 VDiG~g~T~v~pv~~G~~~~~-~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~ 235 (394)
T 1k8k_B 157 VDSGDGVTHICPVYEGFSLPH-LTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLAL 235 (394)
T ss_dssp EEECSSCEEEECEETTEECST-TCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHH
T ss_pred EEcCCCceEeeeeECCEEccc-ceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhc
Confidence 999999999999999999998 8899999999999999999999887774 5789999999999999988776532
Q ss_pred ---cccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCcc
Q 015305 322 ---DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (409)
Q Consensus 322 ---~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG 398 (409)
.....|+||||+.+.++.|||.+||+||+|+++|.+..+|+++|.++|++|++ |+ |+++++|||||||+|++||
T Consensus 236 ~~~~~~~~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~-d~--r~~l~~nIvLtGG~s~~~G 312 (394)
T 1k8k_B 236 ETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADI-DT--RSEFYKHIVLSGGSTMYPG 312 (394)
T ss_dssp HCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCT-TT--HHHHHTTCEEESGGGCSTT
T ss_pred cCCcCceEEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCH-HH--HHHHHhCEEEeCccccccc
Confidence 13457999999999999999999999999999999999999999999999998 98 8999999999999999999
Q ss_pred HHHHHhhhhc
Q 015305 399 LAGIRNSFNK 408 (409)
Q Consensus 399 f~eRL~~E~k 408 (409)
|.+||++|++
T Consensus 313 ~~~rl~~el~ 322 (394)
T 1k8k_B 313 LPSRLERELK 322 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 4
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=5e-52 Score=417.56 Aligned_cols=270 Identities=28% Similarity=0.540 Sum_probs=241.6
Q ss_pred CceEEEeCCCCeEEEEEeCCCCCCcccccccc-----------------cCC----------ccchH-------HHHHHH
Q 015305 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLRH 170 (409)
Q Consensus 125 ~~~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------------~G~----------~~~Pi-------~~~le~ 170 (409)
.++||||+||+++|+||+|++.|+.++|++++ +|+ +.+|+ |+.++.
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~~e~ 84 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEK 84 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHHHH
T ss_pred CceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHHHHH
Confidence 37899999999999999999999999888652 121 34676 889999
Q ss_pred HHHHHH-hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcceEEEE
Q 015305 171 FFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVN 248 (409)
Q Consensus 171 ~~~~~~-~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~sglVVD 248 (409)
+|+++| +.|+++|.++|+++++|++++ ...|++ +.|++|| +|+|++++++++++|+||+|+++|+|||
T Consensus 85 i~~~~~~~~L~~~~~~~~vvit~p~~~~------~~~r~~----~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvD 154 (375)
T 2fxu_A 85 IWHHTFYNELRVAPEEHPTLLTEAPLNP------KANREK----MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLD 154 (375)
T ss_dssp HHHHHHHTTSCCCGGGSCEEEEECTTCC------HHHHHH----HHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHhcCCCCcCCcEEEEeCCCCc------HHHHHH----HHHHHHHhcCcceEEEccchheeeeecCCCeEEEEE
Confidence 999988 679999999999999998764 566655 5667777 9999999999999999999999999999
Q ss_pred eCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhhhc----
Q 015305 249 IGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSK---- 321 (409)
Q Consensus 249 iG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~~~---- 321 (409)
+|+++|+|+||++|+++.+ +..++++||+++|++|.++|..+++++. +.+.+|+||+++||++.|+++++.+
T Consensus 155 iG~gtt~v~~v~~G~~~~~-~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~ 233 (375)
T 2fxu_A 155 SGDGVTHNVPIYEGYALPH-AIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASS 233 (375)
T ss_dssp ECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHC
T ss_pred cCCCceEEeEeECCEEecc-ceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhccc
Confidence 9999999999999999987 7899999999999999999999887775 3578999999999999998776543
Q ss_pred -cccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHH
Q 015305 322 -DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400 (409)
Q Consensus 322 -~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~ 400 (409)
.....|+||||+.+.++.+||.+||.||+|.++|.+..+|+++|.++|++|++ |+ |+++++|||||||+|++|||.
T Consensus 234 ~~~~~~~~lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~-~~--~~~l~~~IvLtGG~s~~pG~~ 310 (375)
T 2fxu_A 234 SSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDI-DI--RKDLYANNVMSGGTTMYPGIA 310 (375)
T ss_dssp STTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCH-HH--HHHHHTCEEEESGGGCSTTHH
T ss_pred CccCeEEECCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCH-HH--HHHHHhCcEeeCCCCCCccHH
Confidence 13568999999999999999999999999999999999999999999999998 88 899999999999999999999
Q ss_pred HHHhhhhc
Q 015305 401 GIRNSFNK 408 (409)
Q Consensus 401 eRL~~E~k 408 (409)
+||++|++
T Consensus 311 ~rl~~el~ 318 (375)
T 2fxu_A 311 DRMQKEIT 318 (375)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
No 5
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.9e-52 Score=441.17 Aligned_cols=231 Identities=15% Similarity=0.217 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHH-hhcccCCCC---CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHc
Q 015305 165 YSRLRHFFATIY-SRMQVKPST---QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA 239 (409)
Q Consensus 165 ~~~le~~~~~~~-~~L~v~p~~---~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~ 239 (409)
|+.+|.+|+++| ++|+++|++ |||||+||++++ +..|+ .++|+||| |+||+++++.+++||+||+
T Consensus 174 wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~------~~~re----~~~eilFE~f~~pa~~~~~~~vla~ya~ 243 (593)
T 4fo0_A 174 LADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYN------KQHVK----ELVNMILMKMGFSGIVVHQESVCATYGS 243 (593)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCC------HHHHH----HHHHHHHHTTCCSEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCC------HHHHH----HHHHHHHHhcCCCeEEeechHHHHHHHC
Confidence 788999999887 569998876 999999999864 66665 46788888 9999999999999999999
Q ss_pred CCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHhhccc
Q 015305 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG--------SLYTVRTLKEKLCYV 311 (409)
Q Consensus 240 G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~--------~~~~ve~iKe~~c~v 311 (409)
|++||||||+|++.|+|+||+||+++.+ ++.++++||+++|++|+++|..+++.+. +.+++++|||++|||
T Consensus 244 G~~tglVVDiG~~~T~v~PV~dG~~l~~-~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v 322 (593)
T 4fo0_A 244 GLSSTCIVDVGDQKTSVCCVEDGVSHRN-TRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHL 322 (593)
T ss_dssp TCSEEEEEEECSSCEEEEEEESSCBCGG-GCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBC
T ss_pred CCCceEEEEeCCCceeeeeeECCEEehh-heEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhccc
Confidence 9999999999999999999999999998 9999999999999999999999886553 246899999999999
Q ss_pred ccchHHhhhc----------------------------------------------------------------------
Q 015305 312 AADYKAELSK---------------------------------------------------------------------- 321 (409)
Q Consensus 312 ~~d~~~e~~~---------------------------------------------------------------------- 321 (409)
+.|+..+...
T Consensus 323 ~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (593)
T 4fo0_A 323 DQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQE 402 (593)
T ss_dssp CTTCCSCEEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC-----------------------
T ss_pred ccchHHhhhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchh
Confidence 8764321100
Q ss_pred ------cccceEEeCCCcEEEecceeeccccccccCCcC--------------------------------CccCCchHH
Q 015305 322 ------DTQASLEIAGEGWFTLSKERFQTGEILFQPRMA--------------------------------DVRTMGLDQ 363 (409)
Q Consensus 322 ------~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~--------------------------------g~~~~gL~~ 363 (409)
.....|++|+|..+.++.+||.+||.||+|... +.+..||++
T Consensus 403 ~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~ 482 (593)
T 4fo0_A 403 QSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDK 482 (593)
T ss_dssp --------------------------------------------------------------------CHHHHSCCCHHH
T ss_pred hhhhcccccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHH
Confidence 012357788999999999999999999998642 123569999
Q ss_pred HHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 364 AVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 364 ~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
+|.++|.+|+..|+ |++|++|||||||+|++|||.+||++||+
T Consensus 483 aI~~SI~~~~~~D~--r~~L~~NIvltGG~s~~pGf~~RL~~eL~ 525 (593)
T 4fo0_A 483 AILHSIDCCSSDDT--KKKMYSSILVVGGGLMFHKAQEFLQHRIL 525 (593)
T ss_dssp HHHHHHHTCSSHHH--HHHHHHEEEEESSTTCCBTHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHH--HHHHhCCEEEEchhhchhcHHHHHHHHHH
Confidence 99999999983266 89999999999999999999999999986
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=1e-47 Score=391.00 Aligned_cols=268 Identities=22% Similarity=0.410 Sum_probs=234.8
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc-------------------------cCC---------ccchH-------
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------------FGN---------IESPM------- 164 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~-------------------------~G~---------~~~Pi------- 164 (409)
.+||||+||+++|+||+|++.|+.++|++++ +|+ +.+|+
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~pi~~G~i~d 85 (418)
T 1k8k_A 6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVED 85 (418)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTTSEEECCEETTEESC
T ss_pred CeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCCCEEeccccCCEECC
Confidence 6899999999999999999999988887542 222 23566
Q ss_pred HHHHHHHHHHHH-hhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHH----
Q 015305 165 YSRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYA---- 238 (409)
Q Consensus 165 ~~~le~~~~~~~-~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a---- 238 (409)
|+.++.+|+++| +.|+++|+++++++++|++++ ...|++ +.+++|| +|+|++++++++++|+|+
T Consensus 86 ~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~------~~~r~~----~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~ 155 (418)
T 1k8k_A 86 WDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNT------PENREY----TAEIMFESFNVPGLYIAVQAVLALAASWTS 155 (418)
T ss_dssp HHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCC------HHHHHH----HHHHHHHTSCCSEEEEEEHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCC------HHHHHH----HHHHHHHhcCCCEEEEechHHHHhhhhhcc
Confidence 789999999988 469999999999999998764 566655 5566777 999999999999999999
Q ss_pred -----cCCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcc
Q 015305 239 -----AKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCY 310 (409)
Q Consensus 239 -----~G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~ 310 (409)
.|. +|+|||+|+++|+|+||++|+++.+ ++.++++||+++|++|.++|.+++..+. +.+.+|++|+++||
T Consensus 156 ~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~-~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~ 233 (418)
T 1k8k_A 156 RQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGS-CIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSY 233 (418)
T ss_dssp TTCCSCCC-CEEEEEESSSCEEEEEEETTEECGG-GCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCC
T ss_pred cccCCCCC-eEEEEEcCCCceEEEEeECCEEccc-ceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhch
Confidence 566 9999999999999999999999988 8899999999999999999999887664 35789999999999
Q ss_pred cccchHHhhhcc------ccceEEeCCCc-----EEEecceeeccccccccCCcCCccC-CchHHHHHHHHhcCCCCCcc
Q 015305 311 VAADYKAELSKD------TQASLEIAGEG-----WFTLSKERFQTGEILFQPRMADVRT-MGLDQAVALCMDHCHYAELS 378 (409)
Q Consensus 311 v~~d~~~e~~~~------~~~~y~Lpdg~-----~i~l~~erf~~~E~LF~P~~~g~~~-~gL~~~I~~sI~~~~~~dl~ 378 (409)
++.|+.+++++. ....|++||+. .+.++.+||.+||+||+|.+.+.+. .+|+++|.++|++|++ |+
T Consensus 234 v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~-~~- 311 (418)
T 1k8k_A 234 VCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPI-DV- 311 (418)
T ss_dssp CCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCG-GG-
T ss_pred hcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCH-HH-
Confidence 999887665321 13579999988 8999999999999999999888774 7999999999999998 88
Q ss_pred chHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 379 GDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 379 ~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
|+++++|||||||+|++|||.+||++|++
T Consensus 312 -~~~l~~~IvL~GG~s~~pg~~~rl~~el~ 340 (418)
T 1k8k_A 312 -RRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340 (418)
T ss_dssp -TTHHHHCEEEESGGGCSTTHHHHHHHHHH
T ss_pred -HHHHHhceEEeCCccccccHHHHHHHHHH
Confidence 78999999999999999999999999985
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=8.2e-37 Score=319.28 Aligned_cols=226 Identities=23% Similarity=0.338 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHh--hcccCCC---CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHH
Q 015305 165 YSRLRHFFATIYS--RMQVKPS---TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYA 238 (409)
Q Consensus 165 ~~~le~~~~~~~~--~L~v~p~---~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a 238 (409)
|+.++++|+++|. +|+++|. ++||||+||++++ +..|++ +.|+||| |++|+++++.+++||+||
T Consensus 196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp------~~~REk----m~EIlFE~fgvpavyl~~qavlAlya 265 (655)
T 4am6_A 196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFK------KSHVET----FIRVLLTELQFQAVAIIQESLATCYG 265 (655)
T ss_dssp HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCC------HHHHHH----HHHHHHHTSCCSEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCC------HHHHHH----HHHHHHhhcCCCeeeeccHHHHHHHh
Confidence 7889999999986 7999996 8999999999864 666655 6677777 999999999999999999
Q ss_pred cC-CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCC-----CCCc---HHHHHHHHHhhc
Q 015305 239 AK-RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNI-----NFGS---LYTVRTLKEKLC 309 (409)
Q Consensus 239 ~G-~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~-----~~~~---~~~ve~iKe~~c 309 (409)
+| .++|+|||+|++.|+|+||++|+++.+ ++.++++||+++|++|.++|..+++ ++.+ .+++++|||++|
T Consensus 266 sGl~ttGLVVDiG~g~T~VvPV~eG~vl~~-ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~C 344 (655)
T 4am6_A 266 AGISTSTCVVNIGAAETRIACVDEGTVLEH-SAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFT 344 (655)
T ss_dssp SCCSSCEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHC
T ss_pred CCCCCceEEEcCCCceEEEEEEeCCEEEhh-heeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheE
Confidence 99 699999999999999999999999998 8999999999999999999999986 4443 579999999999
Q ss_pred cc-ccchHHhhhccccceEEeCCC----cEEEecceeeccccccccCCcCCc----------------------------
Q 015305 310 YV-AADYKAELSKDTQASLEIAGE----GWFTLSKERFQTGEILFQPRMADV---------------------------- 356 (409)
Q Consensus 310 ~v-~~d~~~e~~~~~~~~y~Lpdg----~~i~l~~erf~~~E~LF~P~~~g~---------------------------- 356 (409)
|| ..|+..+. .......|++ ..+.++.|||.+||+||+|.+++.
T Consensus 345 yVs~~Di~~q~---~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd 421 (655)
T 4am6_A 345 TFQDADVAVQL---YNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELND 421 (655)
T ss_dssp CCCGGGCCSEE---EEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCS
T ss_pred EEcccchhhhh---hcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCC
Confidence 99 45542110 1111123543 358899999999999999875210
Q ss_pred ---------------------------------------------------cCCchHHHHHHHHhc-CCCCCccchHhhc
Q 015305 357 ---------------------------------------------------RTMGLDQAVALCMDH-CHYAELSGDDAWF 384 (409)
Q Consensus 357 ---------------------------------------------------~~~gL~~~I~~sI~~-~~~~dl~~r~~L~ 384 (409)
...+|.++|.+||.+ |...|...-+++|
T Consensus 422 ~~S~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y 501 (655)
T 4am6_A 422 WNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFY 501 (655)
T ss_dssp CCCHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred ccchhHHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHh
Confidence 014899999999994 3211664335999
Q ss_pred CCcEEeccCCCCccHHHHHh
Q 015305 385 KTVILTGGSACLPGLAGIRN 404 (409)
Q Consensus 385 ~NIvLtGG~S~ipGf~eRL~ 404 (409)
+||+++||+|+||||..-|.
T Consensus 502 ~nilivGggski~g~~~~L~ 521 (655)
T 4am6_A 502 SNILIVGGSSKIPALDFILT 521 (655)
T ss_dssp TCEEEESTTCCCTTHHHHHH
T ss_pred hcEEEEcCcccCccHHHHHH
Confidence 99999999999999965554
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.93 E-value=1.7e-25 Score=221.11 Aligned_cols=253 Identities=16% Similarity=0.161 Sum_probs=189.4
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccc----------cCC--------------ccchH-------HHHHHHHHHH
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE----------FGN--------------IESPM-------YSRLRHFFAT 174 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~----------~G~--------------~~~Pi-------~~~le~~~~~ 174 (409)
.+|+||+||.++|+|++++. |...+||++. +|+ +.+|+ |+..+.+|.+
T Consensus 4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~ 82 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRY 82 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHHHH
T ss_pred ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHHHH
Confidence 57999999999999999865 5444565442 232 12454 5678889998
Q ss_pred HHhhccc-C-CCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEE
Q 015305 175 IYSRMQV-K-PSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVV 247 (409)
Q Consensus 175 ~~~~L~v-~-p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVV 247 (409)
+++++.. . +.+.++++++|...+ ...|+.+.+. ++. +|++.+.++++|++|++++|. .+.+||
T Consensus 83 ~l~~~~~~~~~~~~~~vitvP~~~~------~~~r~~~~~a-~~~---aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVv 152 (344)
T 1jce_A 83 FINKAKGGMNLFKPRVVIGVPIGIT------DVERRAILDA-GLE---AGASKVFLIEEPMAAAIGSNLNVEEPSGNMVV 152 (344)
T ss_dssp HHHHHHTSCCSCCCEEEEEECTTCC------HHHHHHHHHH-HHH---TTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEE
T ss_pred HHHHHhhccccCCCeEEEEECCCCC------HHHHHHHHHH-HHH---cCCCeEeccCCHHHHHHhcCCCCCCCceEEEE
Confidence 8877643 3 456889999998653 4566655443 233 999999999999999999986 689999
Q ss_pred EeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceE
Q 015305 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASL 327 (409)
Q Consensus 248 DiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y 327 (409)
|+|+++|+++++..|.++.. ...++||+++|+.|.+.+.++.....+.+.+|++|+++|+...+...+ ...+
T Consensus 153 DiGggttdvsv~~~~~~~~~---~~~~lGG~~id~~l~~~l~~~~~~~~~~~~ae~~K~~l~~~~~~~~~~-----~~~~ 224 (344)
T 1jce_A 153 DIGGGTTEVAVISLGSIVTW---ESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKEND-----ELET 224 (344)
T ss_dssp EECSSCEEEEEEETTEEEEE---EEESCSHHHHHHHHHHHHHHHHCEECCHHHHHHHHHHHCBCSCCHHHH-----HCEE
T ss_pred EeCCCeEEEEEEEcCCEEee---CCCCccChhHHHHHHHHHHHHhCcccCHHHHHHHHHHHhccCccccCC-----cceE
Confidence 99999999999999988754 678999999999999998865211124678999999999876553221 1123
Q ss_pred EeC-----CCc--EEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhc-CCcEEeccCCCCccH
Q 015305 328 EIA-----GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWF-KTVILTGGSACLPGL 399 (409)
Q Consensus 328 ~Lp-----dg~--~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~-~NIvLtGG~S~ipGf 399 (409)
+++ +|. .+.++.++|. -+|+|.. ..+.+.|.++|++++. ++ +.+++ ++|+|+||+|++|||
T Consensus 225 ~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~~p~l 293 (344)
T 1jce_A 225 TVSGIDLSTGLPRKLTLKGGEVR---EALRSVV-----VAIVESVRTTLEKTPP-EL--VSDIIERGIFLTGGGSLLRGL 293 (344)
T ss_dssp EEEEEETTTTEEEEEEEEHHHHH---HHTHHHH-----HHHHHHHHHHHHTSCH-HH--HHHHHHHCEEEESGGGCSBTH
T ss_pred EEeccccCCCCceeEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCc-hh--ccchhhCcEEEECccccchHH
Confidence 443 554 4666666553 3555532 3588899999999986 65 56777 799999999999999
Q ss_pred HHHHhhhhc
Q 015305 400 AGIRNSFNK 408 (409)
Q Consensus 400 ~eRL~~E~k 408 (409)
.++|++++.
T Consensus 294 ~~~l~~~~~ 302 (344)
T 1jce_A 294 DTLLQKETG 302 (344)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHC
Confidence 999998864
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.72 E-value=1e-16 Score=166.83 Aligned_cols=246 Identities=17% Similarity=0.146 Sum_probs=165.4
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcc--------ccccccc-------CC------ccc-------------hH-------
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGR--------TATFLEF-------GN------IES-------------PM------- 164 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~--------~~t~~~~-------G~------~~~-------------Pi------- 164 (409)
.+|.||+||.++++|++++..|..+ .||++.+ |+ ... |+
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg~p~~~~~~g~ 82 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPNTIISIKRHMGTDYKVEIEGK 82 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCSSEEECGGGTTTSCCCEEETTE
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCCCcHHHHHHhcCCCcEEEECCE
Confidence 4799999999999999988877655 6665432 21 001 22
Q ss_pred ----HHHHHHHHHHHHh----hcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHH
Q 015305 165 ----YSRLRHFFATIYS----RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLAL 236 (409)
Q Consensus 165 ----~~~le~~~~~~~~----~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal 236 (409)
.+.+..+++++.+ .++ .....++++.|.... ...|+.+++.. +. .|++.+.++++|.+|+
T Consensus 83 ~~~~~ei~a~~L~~l~~~ae~~l~--~~~~~~VitvPa~~~------~~qr~a~~~a~-~~---AGl~~~~li~Ep~AAA 150 (509)
T 2v7y_A 83 QYTPQEISAIILQYLKSYAEDYLG--EPVTRAVITVPAYFN------DAQRQATKDAG-RI---AGLEVERIINEPTAAA 150 (509)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEecCHHHHH
Confidence 2223333333322 122 234679999998653 45676665543 33 8999999999999999
Q ss_pred HHcCC-----cceEEEEeCCceeEEEEEe--cCeE-eecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc------
Q 015305 237 YAAKR-----TSGIVVNIGFQVTSVVPIL--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS------ 297 (409)
Q Consensus 237 ~a~G~-----~sglVVDiG~~~T~v~PV~--dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~------ 297 (409)
+++|. .+.+|+|+|+++|+++.+. +|.. +.. .....++||.++++.|.+++.++ +..+..
T Consensus 151 lay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a-~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~ 229 (509)
T 2v7y_A 151 LAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKA-TAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQ 229 (509)
T ss_dssp HHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEE-EEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHH
T ss_pred HHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEE-ecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence 99985 4789999999999999765 3643 222 23446899999999999887664 333321
Q ss_pred --HHHHHHHHHhhcccccchHHhhhccccceEEeC------CC---cEEEecceeeccccccccCCcCCccCCchHHHHH
Q 015305 298 --LYTVRTLKEKLCYVAADYKAELSKDTQASLEIA------GE---GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVA 366 (409)
Q Consensus 298 --~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lp------dg---~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~ 366 (409)
...+|.+|+.++.... ..+++| +| ..+.++.++|. -+|+|.. ..+.+.|.
T Consensus 230 ~l~~~aE~~K~~ls~~~~-----------~~i~l~~~~~~~~G~~~~~~~itr~~fe---~l~~~~~-----~~i~~~i~ 290 (509)
T 2v7y_A 230 RLKDAAEKAKKELSGVTQ-----------TQISLPFISANENGPLHLEMTLTRAKFE---ELSAHLV-----ERTMGPVR 290 (509)
T ss_dssp HHHHHHHHHHHHTTTCSE-----------EEEEEEEEEEETTEEEEEEEEEEHHHHH---HHTHHHH-----HTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCc-----------EEEEEeccccCCCCCeeEEEEEEHHHHH---HHHHHHH-----HHHHHHHH
Confidence 2567888988775421 122332 23 23455555542 3444432 34788899
Q ss_pred HHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 367 LCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 367 ~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
++|+++.. .....++|+|+||+|.+|++.++|++++.
T Consensus 291 ~~L~~a~~-----~~~~i~~VvLvGG~s~~p~v~~~l~~~f~ 327 (509)
T 2v7y_A 291 QALQDAGL-----TPADIDKVILVGGSTRIPAVQEAIKRELG 327 (509)
T ss_dssp HHHHHHTC-----CGGGCSEEEEESGGGGCHHHHHHHHHHHS
T ss_pred HHHHHcCC-----ChhHCcEEEEECCcccChHHHHHHHHHhC
Confidence 99988875 23566899999999999999999998763
No 10
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.71 E-value=2.2e-16 Score=150.40 Aligned_cols=217 Identities=17% Similarity=0.145 Sum_probs=144.6
Q ss_pred ceEEEeCCCCeEEEEEeCCCC-CCcc--ccc-ccccCCccchHHHHHHHHHHHHHhhcc-cCCCC-CCeEEEecCCCCCC
Q 015305 126 GSVIIDGGSGYCKFGWSKYDC-PSGR--TAT-FLEFGNIESPMYSRLRHFFATIYSRMQ-VKPST-QPIVVSIPICHYDD 199 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~-P~~~--~~t-~~~~G~~~~Pi~~~le~~~~~~~~~L~-v~p~~-~pVll~ep~~~~~~ 199 (409)
-.++||+||.++|+....++. +-.. .++ .+.-|.+.. |+..+.+|+++++... ....+ ..++++.|....
T Consensus 29 ~~~gIDiGS~s~k~vi~~~~~~~l~~~~~~~~~l~~g~i~d--~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~-- 104 (272)
T 3h1q_A 29 YKVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKDGLVVD--YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTV-- 104 (272)
T ss_dssp CEEEEECCSSEEEEEEECTTCCEEEEEEEECCCCBTTBCTT--HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---
T ss_pred EEEEEEcccceEEEEEECCCCcEEEEEeecccccCCCEEEc--HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCC--
Confidence 358999999999999865432 1110 111 011121111 4666666666654321 11222 345566665331
Q ss_pred CcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhH
Q 015305 200 TENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALK 279 (409)
Q Consensus 200 ~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~ 279 (409)
. .+++..+.+++. +|++...+..++.++++++|..+++|||+|+++|.++++.+|.++.. ...++||.+
T Consensus 105 ----~-~~~~~~~~~~~~---~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~~---~~~~~Gg~~ 173 (272)
T 3h1q_A 105 ----G-RNAEACGHVVAG---AGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITAT---FDEPTGGTH 173 (272)
T ss_dssp -------CTTHHHHHHHH---TTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEEE---CCBSCCHHH
T ss_pred ----H-HHHHHHHHHHHH---cCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEEE---ecCCCcHHH
Confidence 2 233333333333 99999999999999999999999999999999999999999998754 668999999
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCCCcEEEecceeeccccccccCCcCCccCC
Q 015305 280 LTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTM 359 (409)
Q Consensus 280 lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~ 359 (409)
+++.+.+.+.. +.+.++++|++++. ..++. .+.+.++ .
T Consensus 174 ~~~~l~~~l~~------~~~~ae~~k~~~~~-----~~~~~----------------------~~~~~~~---------~ 211 (272)
T 3h1q_A 174 LSLVLAGSYKI------PFEEAETIKKDFSR-----HREIM----------------------RVVRPVI---------E 211 (272)
T ss_dssp HHHHHHHHHTC------CHHHHHHHHHSSTT-----HHHHH----------------------HHHHHHH---------H
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhcCC-----HHHHH----------------------HHHHHHH---------H
Confidence 99999988862 46788999988651 00100 0111111 2
Q ss_pred chHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 360 GLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 360 gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
.+.+.|.+++++++ + .++|+|+||+|++|||.++|++++.
T Consensus 212 ~i~~~i~~~l~~~~--~-------~~~ivL~GG~a~~~~l~~~l~~~l~ 251 (272)
T 3h1q_A 212 KMALIVKEVIKNYD--Q-------TLPVYVVGGTAYLTGFSEEFSRFLG 251 (272)
T ss_dssp HHHHHHHHHTTTSC--S-------SCCEEEESGGGGSTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC--C-------CCEEEEECCccchhhHHHHHHHHhC
Confidence 36677777777665 1 2489999999999999999998864
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.68 E-value=5e-16 Score=155.27 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=133.7
Q ss_pred CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCc------ceEEEEeCCceeEEEE
Q 015305 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT------SGIVVNIGFQVTSVVP 258 (409)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~------sglVVDiG~~~T~v~P 258 (409)
...++++.|.... ...|+.+++.+ +. .|++.+.++++|++|+++++.. +.+|||+|+++|+++.
T Consensus 135 ~~~~vitvP~~~~------~~~r~~~~~a~-~~---aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv 204 (383)
T 1dkg_D 135 VTEAVITVPAYFN------DAQRQATKDAG-RI---AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISI 204 (383)
T ss_dssp CCEEEECBCTTCC------HHHHHHHHHHH-HH---TTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEE
T ss_pred CCeEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEE
Confidence 3568899987542 45666655432 22 8999999999999999988753 6799999999999997
Q ss_pred EecC------eEeecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhh
Q 015305 259 ILHG------KVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAEL 319 (409)
Q Consensus 259 V~dG------~~l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~ 319 (409)
+..+ ...........++||+++|+.|.+++.++ +..+.. .+.+|++|++++..... .+
T Consensus 205 ~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~---~i 281 (383)
T 1dkg_D 205 IEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT---DV 281 (383)
T ss_dssp EEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE---EE
T ss_pred EEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce---EE
Confidence 7643 22111022446899999999999888764 444322 35788999988764311 00
Q ss_pred hccccceEEeCCC-c--EEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCC
Q 015305 320 SKDTQASLEIAGE-G--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL 396 (409)
Q Consensus 320 ~~~~~~~y~Lpdg-~--~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~i 396 (409)
. -+..++.++| . .+.++.++|. -+|+|.. ..+.++|.++|++++. +....++|+|+||+|++
T Consensus 282 ~--i~~~~~~~~G~~~~~~~it~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~-----~~~~i~~IvL~GG~s~~ 346 (383)
T 1dkg_D 282 N--LPYITADATGPKHMNIKVTRAKLE---SLVEDLV-----NRSIELLKVALQDAGL-----SVSDIDDVILVGGQTRM 346 (383)
T ss_dssp E--EEEEEEETTEEEEEEEEEEHHHHH---HHSHHHH-----HHHHHHHHHHHHTTTC-----CTTTCCEEEEESGGGGS
T ss_pred E--EecccccCCCCeeEEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCC-----CHhhCCEEEEecCcccc
Confidence 0 0011233444 2 2456655543 3455432 3578889999998865 23456899999999999
Q ss_pred ccHHHHHhhhhc
Q 015305 397 PGLAGIRNSFNK 408 (409)
Q Consensus 397 pGf~eRL~~E~k 408 (409)
||+.++|++++.
T Consensus 347 p~l~~~l~~~~~ 358 (383)
T 1dkg_D 347 PMVQKKVAEFFG 358 (383)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998864
No 12
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.3e-17 Score=156.91 Aligned_cols=61 Identities=25% Similarity=0.595 Sum_probs=58.8
Q ss_pred CCcccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhhcCCCCcccccc
Q 015305 35 LGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFG 95 (409)
Q Consensus 35 ~~~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 95 (409)
.|+++.||.||+++||+||+|+||||++.|||+||.+++||.||++|++||+++|+||.+.
T Consensus 2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~ 62 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWK 62 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGG
T ss_pred cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccc
Confidence 3689999999999999999999999999999999999999999999999999999999984
No 13
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.63 E-value=9.6e-15 Score=146.10 Aligned_cols=189 Identities=19% Similarity=0.175 Sum_probs=123.4
Q ss_pred CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCcc------eEEEEeCCceeEEEE
Q 015305 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTS------GIVVNIGFQVTSVVP 258 (409)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~s------glVVDiG~~~T~v~P 258 (409)
-..++++.|.... ...|+.+++.+ +. .|++.+.++++|.+|++++|... -+|+|+|+++|+++.
T Consensus 153 ~~~~vitvP~~~~------~~~r~~~~~a~-~~---aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv 222 (394)
T 3qfu_A 153 VTHAVVTVPAYFN------DAQRQATKDAG-TI---AGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSL 222 (394)
T ss_dssp CCEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEE
T ss_pred cceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEE
Confidence 3578999988653 45666555443 33 89999999999999999997543 399999999998876
Q ss_pred Ee--cCeEeecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhhccc
Q 015305 259 IL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDT 323 (409)
Q Consensus 259 V~--dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~~ 323 (409)
+- +|..-........++||.++++.|.+.+.++ +..... .+.+|.+|+.+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~----------- 291 (394)
T 3qfu_A 223 LSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQM----------- 291 (394)
T ss_dssp EEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTCS-----------
T ss_pred EEEeCCEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccCC-----------
Confidence 64 4433222022346899999999999887542 222211 134555665543211
Q ss_pred cceEEeC---CCc--EEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCcc
Q 015305 324 QASLEIA---GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (409)
Q Consensus 324 ~~~y~Lp---dg~--~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG 398 (409)
...+.++ +|. .+.+..+.| |-++.|. ...+.+.|.++|+++.. + ....++|+|+||+|++||
T Consensus 292 ~~~~~~~~~~~~~~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~-~----~~~i~~VvLvGG~s~~p~ 358 (394)
T 3qfu_A 292 STRIEIDSFVDGIDLSETLTRAKF---EELNLDL-----FKKTLKPVEKVLQDSGL-E----KKDVDDIVLVGGSTRIPK 358 (394)
T ss_dssp EEEEEEEEEETTEEEEEEEEHHHH---HHHHHHH-----HHHTHHHHHHHHHHHTC-C----GGGCCEEEEESGGGGSHH
T ss_pred cEEEEEEeccCCceeEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC-C----HHHCCEEEEECCccccHH
Confidence 1112222 333 234444433 2233332 13477888899988875 3 356689999999999999
Q ss_pred HHHHHhhhh
Q 015305 399 LAGIRNSFN 407 (409)
Q Consensus 399 f~eRL~~E~ 407 (409)
+.++|++++
T Consensus 359 l~~~l~~~~ 367 (394)
T 3qfu_A 359 VQQLLESYF 367 (394)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999886
No 14
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.57 E-value=3.3e-14 Score=143.00 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=123.1
Q ss_pred CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCcce---------EEEEeCCceeE
Q 015305 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSG---------IVVNIGFQVTS 255 (409)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~sg---------lVVDiG~~~T~ 255 (409)
-..++++.|.... ...|+.+++. ++. .|++.+.++++|.+|+++++.... +|+|+|+++|+
T Consensus 158 ~~~~vitvPa~~~------~~~r~~~~~a-~~~---AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~d 227 (404)
T 3i33_A 158 VHSAVITVPAYFN------DSQRQATKDA-GTI---TGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFD 227 (404)
T ss_dssp CCEEEEEECTTCC------HHHHHHHHHH-HHH---HTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEE
T ss_pred CCcEEEEECCCCC------HHHHHHHHHH-HHH---cCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEE
Confidence 3568999997653 4566655443 233 899999999999999999875433 99999999999
Q ss_pred EEEEe--cCeEeecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhh
Q 015305 256 VVPIL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELS 320 (409)
Q Consensus 256 v~PV~--dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~ 320 (409)
++.+- +|............+||.++++.|.+.+.++ +..+.. ...+|.+|+.+....
T Consensus 228 vsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~-------- 299 (404)
T 3i33_A 228 VSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSST-------- 299 (404)
T ss_dssp EEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSS--------
T ss_pred EEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCc--------
Confidence 98763 4432211023447899999999999887432 222211 135666666653211
Q ss_pred ccccceEEe---CCCc--EEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCC
Q 015305 321 KDTQASLEI---AGEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (409)
Q Consensus 321 ~~~~~~y~L---pdg~--~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (409)
...+.+ .+|. .+.++.+.| |-++.|. ...+.+.|.++|+++.. + ....+.|+|+||+|.
T Consensus 300 ---~~~~~~~~~~~g~~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~-~----~~~i~~VvLvGG~s~ 363 (404)
T 3i33_A 300 ---QASIEIDSLYEGVDFYTSITRARF---EELNADL-----FRGTLEPVEKALRDAKL-D----KGQIQEIVLVGGSTR 363 (404)
T ss_dssp ---EEEEEEEEEETTEEEEEEEEHHHH---HHHTHHH-----HHHTHHHHHHHHHHHTC-C----GGGCCEEEEESGGGG
T ss_pred ---ceEEEEeeccCCceeEEEEcHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC-C----HhhCCEEEEECCccc
Confidence 111222 1233 234444433 2233332 13467888888888765 3 345688999999999
Q ss_pred CccHHHHHhhhh
Q 015305 396 LPGLAGIRNSFN 407 (409)
Q Consensus 396 ipGf~eRL~~E~ 407 (409)
+|++.++|++.+
T Consensus 364 ~p~l~~~l~~~~ 375 (404)
T 3i33_A 364 IPKIQKLLQDFF 375 (404)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHHHc
Confidence 999999999876
No 15
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.39 E-value=1.3e-11 Score=129.67 Aligned_cols=187 Identities=19% Similarity=0.248 Sum_probs=124.1
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC-------cceEEEEeCCceeEEEE
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-------TSGIVVNIGFQVTSVVP 258 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-------~sglVVDiG~~~T~v~P 258 (409)
..++++.|.... ...|+.+++.. +. .|++.+.++++|.+|++++|. .+.+|+|+|+++++++.
T Consensus 140 ~~~VitVPa~f~------~~qr~a~~~A~-~~---AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv 209 (554)
T 1yuw_A 140 TNAVVTVPAYFN------DSQRQATKDAG-TI---AGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSI 209 (554)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HT---TTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEE
T ss_pred CeEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEE
Confidence 468999987542 45566554432 32 899999999999999999873 45799999999999997
Q ss_pred Ee--cCeE-eecccEEEEccchhHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhhcccccchHHhhhcc
Q 015305 259 IL--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKAELSKD 322 (409)
Q Consensus 259 V~--dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~~~ 322 (409)
+. +|.. +.. ......+||+++++.|.+.+.. .+..+.. ...+|.+|+.++...
T Consensus 210 ~~~~~g~~~v~a-~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~---------- 278 (554)
T 1yuw_A 210 LTIAAGIFEVKS-TAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST---------- 278 (554)
T ss_dssp EEEETTEEEEEE-EEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSS----------
T ss_pred EEEcCCcEEEEE-EeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCc----------
Confidence 76 5754 222 2345689999999998887753 2333321 245777888766432
Q ss_pred ccceEEeC---CCc--EEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCCCc
Q 015305 323 TQASLEIA---GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLP 397 (409)
Q Consensus 323 ~~~~y~Lp---dg~--~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ip 397 (409)
...++++ +|. .+.+..+.| |-++.|.. ..+.+.|.++++++.. . ..-.+.|+|+||+|.+|
T Consensus 279 -~~~i~i~~~~~g~~~~~~ltr~~~---e~l~~~~~-----~~i~~~i~~~L~~a~~-~----~~~i~~VvLvGG~srip 344 (554)
T 1yuw_A 279 -QASIEIDSLYEGIDFYTSITRARF---EELNADLF-----RGTLDPVEKALRDAKL-D----KSQIHDIVLVGGSTRIP 344 (554)
T ss_dssp -EEEEEETTCSSSCCEEEEEEHHHH---HHHTHHHH-----HHTTHHHHHHHHHTTC-C----GGGCCEEEEESGGGGCH
T ss_pred -eEEEEEeeccCCceEEEEEEHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----hhhCcEEEEECCcccCh
Confidence 1123333 232 344544443 12333311 1255677778877654 2 34568899999999999
Q ss_pred cHHHHHhhhh
Q 015305 398 GLAGIRNSFN 407 (409)
Q Consensus 398 Gf~eRL~~E~ 407 (409)
++.++|++.+
T Consensus 345 ~v~~~l~~~f 354 (554)
T 1yuw_A 345 KIQKLLQDFF 354 (554)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999999876
No 16
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.39 E-value=8e-12 Score=132.57 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=123.9
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCc------ceEEEEeCCceeEEEEE
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT------SGIVVNIGFQVTSVVPI 259 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~------sglVVDiG~~~T~v~PV 259 (409)
..++++.|.... ...|+.+++.. +. .|...+.++++|.+|++++|.. +.+|+|+|+++++|+.+
T Consensus 136 ~~~VitVPa~f~------d~qr~a~~~A~-~~---AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 2kho_A 136 TEAVITVPAYFN------DAQRQATKDAG-RI---AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISII 205 (605)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HT---TTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEE
T ss_pred cEEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEE
Confidence 468889887542 45666555433 22 8999999999999999998743 36999999999999987
Q ss_pred e------cCeE-eecccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhh
Q 015305 260 L------HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAEL 319 (409)
Q Consensus 260 ~------dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~ 319 (409)
. +|.. +.. ......+||.++++.|.+.+.++ +..+.. ...+|.+|+.++....
T Consensus 206 ~~~~~~~~g~~~v~a-~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~------ 278 (605)
T 2kho_A 206 EIDEVDGEKTFEVLA-TNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ------ 278 (605)
T ss_dssp EEECTTTSCEEEEEE-EEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSE------
T ss_pred EEEecCCCCeEEEEE-ECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCc------
Confidence 6 3432 121 22445899999999998877653 333321 2467788887664321
Q ss_pred hccccceEEeC------CC-c--EEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEe
Q 015305 320 SKDTQASLEIA------GE-G--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILT 390 (409)
Q Consensus 320 ~~~~~~~y~Lp------dg-~--~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLt 390 (409)
..+++| +| . .+.++.+.| |-++.|.. ..+.+.|.++++.+.. . ..-.+.|+|+
T Consensus 279 -----~~i~l~~~~~~~~G~~~~~~~itr~~f---e~l~~~~~-----~~i~~~i~~~L~~a~~-~----~~~i~~VvLv 340 (605)
T 2kho_A 279 -----TDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDLV-----NRSIEPLKVALQDAGL-S----VSDIDDVILV 340 (605)
T ss_dssp -----EEEEEEEEEEETTEEEEEEEEEEHHHH---HTTCCSTT-----GGGTSHHHHHHHTTTC-C----TTTCSEEEEE
T ss_pred -----eEEEecccccCCCCceEEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----hhhCceEEEE
Confidence 122222 23 1 234554444 23344422 2366778888887764 2 2345889999
Q ss_pred ccCCCCccHHHHHhhhh
Q 015305 391 GGSACLPGLAGIRNSFN 407 (409)
Q Consensus 391 GG~S~ipGf~eRL~~E~ 407 (409)
||+|.+|++.++|++.+
T Consensus 341 GG~srip~v~~~l~~~f 357 (605)
T 2kho_A 341 GGQTRMPMVQKKVAEFF 357 (605)
T ss_dssp SGGGGSHHHHHHHHHHH
T ss_pred CCcccChHHHHHHHHhc
Confidence 99999999999998765
No 17
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.39 E-value=4.1e-12 Score=126.52 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=103.6
Q ss_pred cCCCeeeeeccchHHHHHcC------Ccc-eEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCC
Q 015305 221 LNVPAVCAINQATLALYAAK------RTS-GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNI 293 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~G------~~s-glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~ 293 (409)
.|+.-..+..+++++++++| +.. .+|||+|+++|+++.+.+|.+... ..+++||.++++.+.+.+. .
T Consensus 163 aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~~---~~~~~GG~~i~~~i~~~~~---~ 236 (377)
T 2ych_A 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAV---RVLTLSGKDFTEAIARSFN---L 236 (377)
T ss_dssp TTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEEE---EEESCSHHHHHHHHHHHTT---C
T ss_pred CCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEEE---EeeechHHHHHHHHHHHhC---C
Confidence 89999999999999988764 234 599999999999999999988754 6789999999999887432 1
Q ss_pred CCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCC
Q 015305 294 NFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCH 373 (409)
Q Consensus 294 ~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~ 373 (409)
+.+.+|++|+++++...+..++ ...+++|+ ..+.++.+.+ .|++ .|. ...+.+.|.++++.++
T Consensus 237 ---~~~~aE~~K~~~~~~~~~~~~~-----~~~i~~~~-~~~~i~~~~~--~~~i-~~~-----~~~i~~~i~~~l~~~~ 299 (377)
T 2ych_A 237 ---DLLAAEEVKRTYGMATLPTEDE-----ELLLDFDA-ERERYSPGRI--YDAI-RPV-----LVELTQELRRSLEFFR 299 (377)
T ss_dssp ---CHHHHHHHHHHTC-------------------------------CH--HHHH-HHH-----HHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHhhccccccccccc-----cccccccc-ccccCCHHHH--HHHH-HHH-----HHHHHHHHHHHHHHHH
Confidence 3678999999988765432111 11123432 2233333221 1111 221 1246677777777654
Q ss_pred CCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 374 YAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 374 ~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
. .. +....++|+|+||+|++||+.+++++++.
T Consensus 300 ~-~~--~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 300 I-QL--EEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp H-HC-----CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred h-cc--CCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 3 33 34577899999999999999999998763
No 18
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.31 E-value=3.9e-11 Score=128.72 Aligned_cols=186 Identities=15% Similarity=0.174 Sum_probs=122.9
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC------------cceEEEEeCCce
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------------TSGIVVNIGFQV 253 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~------------~sglVVDiG~~~ 253 (409)
..++++.|.... ...|+.+++.. +. .|++.+.++++|.+|++++|. .+.+|+|+|+++
T Consensus 139 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT 208 (675)
T 3d2f_A 139 TDVCIAVPPWYT------EEQRYNIADAA-RI---AGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSS 208 (675)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSC
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCc
Confidence 468999987542 45666655433 33 899999999999999988752 347999999999
Q ss_pred eEEEEEe--cCeE-eecccEEEEccchhHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhhcccccchHH
Q 015305 254 TSVVPIL--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKA 317 (409)
Q Consensus 254 T~v~PV~--dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~--------~~~ve~iKe~~c~v~~d~~~ 317 (409)
++|+.+- +|.. +.. ......+||.++++.|.+.+.. .+..+.. ...+|.+|+.++...
T Consensus 209 ~Dvsv~~~~~g~~~V~a-~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~----- 282 (675)
T 3d2f_A 209 YTCSIMAFKKGQLKVLG-TACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT----- 282 (675)
T ss_dssp EEEEEEEEETTEEEEEE-EEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCS-----
T ss_pred EEEEEEEecCCeEEEEE-EcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCC-----
Confidence 9998775 5654 232 2234689999999999988753 2333221 256778888765321
Q ss_pred hhhccccceEEeC---CC--cEEEecceee-ccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEec
Q 015305 318 ELSKDTQASLEIA---GE--GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTG 391 (409)
Q Consensus 318 e~~~~~~~~y~Lp---dg--~~i~l~~erf-~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtG 391 (409)
...+.++ +| ..+.|+.+.| ...+.+|+ .+.+.|.++++.... . ..-...|+|+|
T Consensus 283 ------~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~---------~i~~~i~~~L~~a~l-~----~~~I~~VvLvG 342 (675)
T 3d2f_A 283 ------NAPFSVESVMNDVDVSSQLSREELEELVKPLLE---------RVTEPVTKALAQAKL-S----AEEVDFVEIIG 342 (675)
T ss_dssp ------EEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHT---------TTTHHHHHHHHHHTC-C----GGGCCEEEEES
T ss_pred ------ceEEEEeeeccCceEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHhCC-C----hhhCcEEEEEC
Confidence 1122332 12 2345555444 22233332 356677777777654 2 23347899999
Q ss_pred cCCCCccHHHHHhhhh
Q 015305 392 GSACLPGLAGIRNSFN 407 (409)
Q Consensus 392 G~S~ipGf~eRL~~E~ 407 (409)
|+|.+|++.++|++.+
T Consensus 343 GssriP~v~~~l~~~f 358 (675)
T 3d2f_A 343 GTTRIPTLKQSISEAF 358 (675)
T ss_dssp GGGGSHHHHHHHHHHH
T ss_pred CCccChHHHHHHHHhc
Confidence 9999999999998765
No 19
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.28 E-value=8.2e-11 Score=118.48 Aligned_cols=189 Identities=16% Similarity=0.158 Sum_probs=119.2
Q ss_pred CCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCCc--------ceEEEEeCCceeEE
Q 015305 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT--------SGIVVNIGFQVTSV 256 (409)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~~--------sglVVDiG~~~T~v 256 (409)
...++++.|.... ...|+.+++.+.. .|+..+.++++|.+|+++++.. +.+|+|+|+++|++
T Consensus 150 ~~~~vitvPa~~~------~~~r~~~~~a~~~----AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dv 219 (409)
T 4gni_A 150 VTSAVITIPTNFT------EKQKAALIAAAAA----ADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDV 219 (409)
T ss_dssp CCEEEEEECTTCC------HHHHHHHHHHHHH----TTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEE
T ss_pred CCeEEEEECCCCC------HHHHHHHHHHHHH----cCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEE
Confidence 3568899887542 3456555443333 8999999999999999999864 47999999999999
Q ss_pred EEE--ecCeEeecccEEEEccchhHHHHHHHHHHHhcC-------CCCC-c-------HHHHHHHHHhhcccccchHHhh
Q 015305 257 VPI--LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN-------INFG-S-------LYTVRTLKEKLCYVAADYKAEL 319 (409)
Q Consensus 257 ~PV--~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~-------~~~~-~-------~~~ve~iKe~~c~v~~d~~~e~ 319 (409)
+.+ .+|..-.-......++||.++|+.|.+.+..+. .... + ...+|.+|+.+..-
T Consensus 220 sv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~-------- 291 (409)
T 4gni_A 220 TVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRS-------- 291 (409)
T ss_dssp EEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred EEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCC--------
Confidence 875 333221110123478999999999998876531 1111 1 12456666654311
Q ss_pred hccccceEEeC---CCc--EEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCC
Q 015305 320 SKDTQASLEIA---GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (409)
Q Consensus 320 ~~~~~~~y~Lp---dg~--~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (409)
....+.++ ++. .+.++.+.| |-++.|. ...+.++|.+++++... . ..-.+.|+|+||+|
T Consensus 292 ---~~~~i~i~~~~~~~~~~~~itr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~-~----~~~i~~V~LvGG~s 355 (409)
T 4gni_A 292 ---TNASFSVESLIDGLDFASTINRLRY---ETIARTV-----FEGFNRLVESAVKKAGL-D----PLDVDEVIMSGGTS 355 (409)
T ss_dssp ---SEEEEEEEEEETTEEEEEEEEHHHH---HHHTHHH-----HHHHHHHHHHHHHHTTC-C----GGGCCEEEEESGGG
T ss_pred ---CceEEEeecccCCcceEEEeeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC-C----HHHCCEEEEECCcc
Confidence 11122222 232 233443332 2234432 13467778888887654 2 34568899999999
Q ss_pred CCccHHHHHhhhh
Q 015305 395 CLPGLAGIRNSFN 407 (409)
Q Consensus 395 ~ipGf~eRL~~E~ 407 (409)
.+|++.++|++.+
T Consensus 356 ~~p~v~~~l~~~f 368 (409)
T 4gni_A 356 NTPRIAANFRYIF 368 (409)
T ss_dssp GCHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHc
Confidence 9999999998865
No 20
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.19 E-value=8.1e-12 Score=89.60 Aligned_cols=46 Identities=30% Similarity=0.519 Sum_probs=40.6
Q ss_pred CcccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHH
Q 015305 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (409)
Q Consensus 36 ~~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (409)
..++.||.|++.+|+++|+++|+++++.|||.|+.++.|+.||+.+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4688999999999999999999999999999999999999999875
No 21
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.12 E-value=7.1e-10 Score=117.59 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=116.4
Q ss_pred CCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHcCC------cceEEEEeCCceeEEEEE
Q 015305 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPI 259 (409)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~G~------~sglVVDiG~~~T~v~PV 259 (409)
..++++.|.... ...|+.+++.. +. .|.+.+.++++|.+|++++|. .+-+|+|+|+++++++.+
T Consensus 136 ~~~VITVPa~f~------~~qr~a~~~Aa-~~---AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 4b9q_A 136 TEAVITVPAYFN------DAQRQATKDAG-RI---AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISII 205 (605)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEE
T ss_pred CeEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEE
Confidence 468888886542 45666554433 33 899999999999999999873 345899999999999977
Q ss_pred ecCe-----Eeec-ccEEEEccchhHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhhcccccchHHhhh
Q 015305 260 LHGK-----VMRK-VGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELS 320 (409)
Q Consensus 260 ~dG~-----~l~~-~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~ve~iKe~~c~v~~d~~~e~~ 320 (409)
--+. .+.. .......+||.++++.|.+.+..+ +..... ...+|.+|+.+....
T Consensus 206 ~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~-------- 277 (605)
T 4b9q_A 206 EIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ-------- 277 (605)
T ss_dssp EEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCS--------
T ss_pred EEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCC--------
Confidence 5432 1111 012335789999999988877653 222211 235666676654221
Q ss_pred ccccceEEeC----C--C---cEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEec
Q 015305 321 KDTQASLEIA----G--E---GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTG 391 (409)
Q Consensus 321 ~~~~~~y~Lp----d--g---~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtG 391 (409)
...+.+| + | ..+.++.+.| |-++.|.. ..+.+.|.++++.... + ..-.+.|+|+|
T Consensus 278 ---~~~i~~~~~~~~~~g~~~~~~~itr~~~---e~l~~~~~-----~~i~~~v~~~L~~a~~-~----~~~i~~VvLvG 341 (605)
T 4b9q_A 278 ---QTDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDLV-----NRSIEPLKVALQDAGL-S----VSDIDDVILVG 341 (605)
T ss_dssp ---EEEEEEEEEEECSSSEEEEEEEEEHHHH---HHHHHHHH-----HHTTHHHHHHHHHTTC-C----GGGCSEEEEES
T ss_pred ---CeEEEEeeeccCCCCCeeEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----HHHCcEEEEeC
Confidence 1111221 1 1 1234444333 12233211 2355677777776654 2 23457899999
Q ss_pred cCCCCccHHHHHhhhh
Q 015305 392 GSACLPGLAGIRNSFN 407 (409)
Q Consensus 392 G~S~ipGf~eRL~~E~ 407 (409)
|+|.+|++.++|++.+
T Consensus 342 G~sriP~v~~~l~~~f 357 (605)
T 4b9q_A 342 GQTRMPMVQKKVAEFF 357 (605)
T ss_dssp GGGGSHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHh
Confidence 9999999999998764
No 22
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.11 E-value=6.4e-10 Score=112.87 Aligned_cols=173 Identities=13% Similarity=0.117 Sum_probs=114.2
Q ss_pred HHHHHHHHhhcCCCeeeeeccchHHHHHcCC-----cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHH
Q 015305 211 KDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (409)
Q Consensus 211 ~E~l~e~lFE~~vpav~~~~~~vlal~a~G~-----~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~ 285 (409)
.+.+.+++-..|..-..+..+|+++++++.. .+.+|||+|+++|+++.+.+|.+... ..+++||+++|+.+.
T Consensus 170 v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~---~~i~~GG~~it~dIa 246 (419)
T 4a2a_A 170 YEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI---SYVPVGMKHVIKDVS 246 (419)
T ss_dssp HHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE---EEESCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEE---EecccHHHHHHHHHH
Confidence 3444444333788888899999999998864 35799999999999999999988764 668999999999998
Q ss_pred HHHHhcCCCCCcHHHHHHHHHhhcccccchHHhhhccccceEEeCCC---cEEEecceee-ccccccccCCcCCccCCch
Q 015305 286 LLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGE---GWFTLSKERF-QTGEILFQPRMADVRTMGL 361 (409)
Q Consensus 286 ~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~~~e~~~~~~~~y~Lpdg---~~i~l~~erf-~~~E~LF~P~~~g~~~~gL 361 (409)
+.+.. +.+.+|.+|.+++....+. .....+++|.. ....++...+ .+-+..+ ..+
T Consensus 247 ~~l~~------~~~~AE~iK~~~g~a~~~~------~~~~~i~v~~~~~~~~~~is~~~l~~ii~p~v---------eei 305 (419)
T 4a2a_A 247 AVLDT------SFEESERLIITHGNAVYND------LKEEEIQYRGLDGNTIKTTTAKKLSVIIHARL---------REI 305 (419)
T ss_dssp HHHTC------CHHHHHHHHHHHCCSCCTT------CCCCEEEEECTTSCSEEEEEHHHHHHHHHHHH---------HHH
T ss_pred HHHCC------CHHHHHHHHHHhccCcccC------CCCceEEEeecCCccceEEcHHHHHHHHHHHH---------HHH
Confidence 86643 4689999999887543221 11223444421 1223322111 1111111 236
Q ss_pred HHHHHHHHhcCCC--CCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305 362 DQAVALCMDHCHY--AELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 362 ~~~I~~sI~~~~~--~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
.+.|.+.|+.... .+.. .....+.|+||||+|++||+.+.+++.+.
T Consensus 306 ~~~V~~~L~~~~~~~p~~~-~~~~~~~IvLtGG~s~lpgl~e~~~~~~g 353 (419)
T 4a2a_A 306 MSKSKKFFREVEAKIVEEG-EIGIPGGVVLTGGGAKIPRINELATEVFK 353 (419)
T ss_dssp HHHHHHHHHHHTTCC---------TTCEEEESGGGGSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccccc-ccccCCEEEEECchhchhhHHHHHHHHHC
Confidence 6677777776643 0110 13467789999999999999999988753
No 23
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.94 E-value=1.5e-09 Score=107.33 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=69.9
Q ss_pred CCeE--EEecCCCCCCCcchHHhHHHHHHHHHHHH--hh--------cCCCeeeeeccchHHHHHc--CC------cceE
Q 015305 186 QPIV--VSIPICHYDDTENAKASRRQLKDCFQQVL--FD--------LNVPAVCAINQATLALYAA--KR------TSGI 245 (409)
Q Consensus 186 ~pVl--l~ep~~~~~~~~~~~~~R~~~~E~l~e~l--FE--------~~vpav~~~~~~vlal~a~--G~------~sgl 245 (409)
..++ ++.|... ....|+.+.+.+.... ++ +++..+.++++|.+|++++ +. .+-+
T Consensus 120 ~~vvL~i~vP~~~------~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vl 193 (346)
T 2fsj_A 120 VDLVIGSGTPLGT------FDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGV 193 (346)
T ss_dssp EEEEEEEEECGGG------HHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEE
T ss_pred eEEEEcccCCHHH------HHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEE
Confidence 3478 7788643 2445666655433210 00 1256789999999999985 31 2349
Q ss_pred EEEeCCceeEEEEEe--cCeEeecccEEEEccchhHHHHHHHHHHHhc
Q 015305 246 VVNIGFQVTSVVPIL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (409)
Q Consensus 246 VVDiG~~~T~v~PV~--dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (409)
|||+|+++|+++.+. +|.++.. ....+++||+++++.+.+.++++
T Consensus 194 VvDIGgGTtDv~vi~~~~g~~v~~-~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 194 VIDVGSRTTDVLTINLMDMEPVVE-LSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp EEEECSSCEEEEEEETTTTEECGG-GCEEESCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEEEecCCEEEee-cCCCcchhHHHHHHHHHHHHHHH
Confidence 999999999999887 7876554 45778999999999998877754
No 24
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.81 E-value=3.1e-09 Score=102.56 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=48.6
Q ss_pred CCcccCCCHHHHHHHHhhcChhhhh-hhhcchhhhHhhhcChHHHHHHHhhc
Q 015305 35 LGAFDQIPWDVLIQIVKLIGPKEAA-KLCVVSKSWRALVSDNRLWIFFLQHQ 85 (409)
Q Consensus 35 ~~~~~~lp~~~~~~i~~~l~p~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (409)
+..+..||.|++..||++|+|+||+ |+++|||.||.+++|+.||+.+++++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4568899999999999999999999 99999999999999999999999986
No 25
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=98.58 E-value=2.7e-07 Score=89.80 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=65.8
Q ss_pred cCCCeeeeeccchHHHHHcC-----CcceEEEEeCCceeEEEEEecCeE-eecccEEEEccchhHHHHHHHHHHHhcCCC
Q 015305 221 LNVPAVCAINQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKV-MRKVGVEVMGLGALKLTGYLRLLMQQNNIN 294 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~G-----~~sglVVDiG~~~T~v~PV~dG~~-l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~ 294 (409)
+++..+.+.+++++++++.+ ..+.+|||+|+++|+++.+.+|.+ +.. .....++||.++++.+.+.+.+++..
T Consensus 138 ~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~-~~~~~~lGg~~~~~~I~~~l~~~~~~ 216 (320)
T 2zgy_A 138 FTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISK-IYGDSSLGVSLVTSAVKDALSLARTK 216 (320)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEE-EEEECSCCTHHHHHHHHHHTTCCSBG
T ss_pred EEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEee-ecCCccccHHHHHHHHHHHHHHcCCC
Confidence 45678899999999998864 346799999999999999998875 443 34667999999999999999865433
Q ss_pred CCcHHHHHHH-HHh
Q 015305 295 FGSLYTVRTL-KEK 307 (409)
Q Consensus 295 ~~~~~~ve~i-Ke~ 307 (409)
+ +.+.++++ |.+
T Consensus 217 i-~~~~ae~~lk~~ 229 (320)
T 2zgy_A 217 G-SSYLADDIIIHR 229 (320)
T ss_dssp G-GHHHHHHHHHTT
T ss_pred C-CHHHHHHHHHHh
Confidence 3 34567776 654
No 26
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=98.49 E-value=7.1e-08 Score=95.69 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=57.8
Q ss_pred CCeeeeeccchHHHHHcC-----------CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhc
Q 015305 223 VPAVCAINQATLALYAAK-----------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (409)
Q Consensus 223 vpav~~~~~~vlal~a~G-----------~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (409)
+..+.+.++++.|+++.+ ..+-+|||||+++|+++.+.+|.+... ....+++||..+++.+.+.++++
T Consensus 154 I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~-~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 154 VKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEE-ESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHTC--
T ss_pred EEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccc-cccCcchHHHHHHHHHHHHHHHh
Confidence 478999999999999975 345689999999999999988888766 56789999999999999999875
No 27
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.40 E-value=1.8e-07 Score=93.37 Aligned_cols=51 Identities=20% Similarity=0.436 Sum_probs=47.8
Q ss_pred CCcccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhhc
Q 015305 35 LGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQ 85 (409)
Q Consensus 35 ~~~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (409)
...++.||.|++.+|+++|+|+|+|+++.|||.|+.+++|+.||+.+++++
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~ 66 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence 457899999999999999999999999999999999999999999988754
No 28
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.34 E-value=6.8e-08 Score=96.46 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=47.8
Q ss_pred CcccCCCHH----HHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhhcC
Q 015305 36 GAFDQIPWD----VLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQ 86 (409)
Q Consensus 36 ~~~~~lp~~----~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (409)
..++.||.| ++++||++|.|+|+|+++.|||.|+.+++|+.||+.++.++.
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~ 63 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 467899999 999999999999999999999999999999999999988764
No 29
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.32 E-value=2.2e-07 Score=92.94 Aligned_cols=52 Identities=15% Similarity=0.429 Sum_probs=47.3
Q ss_pred CCcccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcC-hHHHHHHHhhcC
Q 015305 35 LGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSD-NRLWIFFLQHQQ 86 (409)
Q Consensus 35 ~~~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~ 86 (409)
...+..||.|++++|+++|+|+|+||++.|||.|+.++.| +.||+.++.+..
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~ 64 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence 3467899999999999999999999999999999999999 999999886543
No 30
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=98.31 E-value=2.9e-07 Score=90.28 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=57.6
Q ss_pred CCeeeeeccchHHHHHcC----CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHh
Q 015305 223 VPAVCAINQATLALYAAK----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQ 290 (409)
Q Consensus 223 vpav~~~~~~vlal~a~G----~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~ 290 (409)
+..+.+.++++.++|... ..+.+|||||+++|+++.+.+|.+... ....+++||.++++.+.+.+++
T Consensus 149 I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~-~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 149 ITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPS-ERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHTSSSS
T ss_pred EeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeec-cccchhhHHHHHHHHHHHHHHh
Confidence 467889999999998862 356699999999999999999998765 5577899999999999988886
No 31
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=98.28 E-value=2.5e-06 Score=87.82 Aligned_cols=74 Identities=9% Similarity=0.058 Sum_probs=59.3
Q ss_pred ccchHHHHHcC----C-cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015305 230 NQATLALYAAK----R-TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTL 304 (409)
Q Consensus 230 ~~~vlal~a~G----~-~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~i 304 (409)
-++.+|.+++= + ....+||+|+++|++.-+.+|..+.. ..+++||+++|..+..-|.-. +.+.+|+|
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~a---~~ip~gG~~VT~DIA~~Lg~~-----d~~~AErI 463 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITA---VHLAGAGNMVSLLIKTELGLE-----DLSLAEAI 463 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEEE---EEEECCHHHHHHHHHHHHTCS-----CHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE---EEeccchHHHHHHHHHHhCCC-----CHHHHHHh
Confidence 56667766663 3 34589999999999999999988765 679999999999999888752 37899999
Q ss_pred HHhhcccc
Q 015305 305 KEKLCYVA 312 (409)
Q Consensus 305 Ke~~c~v~ 312 (409)
|. ++...
T Consensus 464 K~-YG~A~ 470 (607)
T 1nbw_A 464 KK-YPLAK 470 (607)
T ss_dssp HH-SCEEE
T ss_pred cc-cCcee
Confidence 99 66543
No 32
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=98.24 E-value=2.3e-06 Score=87.82 Aligned_cols=74 Identities=12% Similarity=0.044 Sum_probs=59.4
Q ss_pred ccchHHHHHcC----C-cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015305 230 NQATLALYAAK----R-TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTL 304 (409)
Q Consensus 230 ~~~vlal~a~G----~-~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~i 304 (409)
-++.+|.+++= + ....+||+|+++|++.-+.+|..+.. ..+++||+++|..+..-|.-. +.+.+|+|
T Consensus 390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a---~~ip~gG~~VT~DIA~~Lgt~-----d~~~AErI 461 (610)
T 2d0o_A 390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIA---THLAGAGDMVTMIIARELGLE-----DRYLAEEI 461 (610)
T ss_dssp EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEE---EEEECSHHHHHHHHHHHHTCC-----CHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE---EEeccchHHHHHHHHHHhCCC-----CHHHHHHh
Confidence 56667766663 3 34589999999999999999988865 679999999999999888752 37899999
Q ss_pred HHhhcccc
Q 015305 305 KEKLCYVA 312 (409)
Q Consensus 305 Ke~~c~v~ 312 (409)
|. ++...
T Consensus 462 K~-YG~A~ 468 (610)
T 2d0o_A 462 KK-YPLAK 468 (610)
T ss_dssp HH-SCEEE
T ss_pred cc-cCcee
Confidence 99 76543
No 33
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.77 E-value=7.2e-06 Score=78.92 Aligned_cols=47 Identities=30% Similarity=0.477 Sum_probs=42.4
Q ss_pred CCcccCCCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHH
Q 015305 35 LGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (409)
Q Consensus 35 ~~~~~~lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (409)
...++.||.|++.+|+++|+.+|+++++.|||.|+.++.|+.+|+..
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 34689999999999999999999999999999999999999887643
No 34
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.48 E-value=0.00087 Score=69.25 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=29.7
Q ss_pred cccCCCHHHHHHHHhhcC-hhhhhhhhcchhhhHhh
Q 015305 37 AFDQIPWDVLIQIVKLIG-PKEAAKLCVVSKSWRAL 71 (409)
Q Consensus 37 ~~~~lp~~~~~~i~~~l~-p~~~~~~~~~~~~~~~~ 71 (409)
.++.||.|++.+|+++|+ ++|+++++.|||.|+.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 578999999999999999 99999999999999998
No 35
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=96.11 E-value=0.035 Score=53.65 Aligned_cols=42 Identities=24% Similarity=0.048 Sum_probs=35.6
Q ss_pred CcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHH
Q 015305 241 RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (409)
Q Consensus 241 ~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~ 285 (409)
..+++|||||+++|.++-.-+|.+... ..+++|+..+++.+.
T Consensus 137 ~~~~lvvDIGGGStEl~~~~~~~~~~~---~Sl~~G~v~l~e~~~ 178 (315)
T 1t6c_A 137 EGEVCVVDQGGGSTEYVFGKGYKVREV---ISLPIGIVNLTETFF 178 (315)
T ss_dssp CSEEEEEEEETTEEEEEEEETTEEEEE---EEECCCHHHHHHHHC
T ss_pred CCCEEEEEeCCCcEEEEEEeCCceeeE---EEEeccHHHHHHHhc
Confidence 567999999999999998888877643 779999999998753
No 36
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=95.99 E-value=0.018 Score=56.02 Aligned_cols=125 Identities=15% Similarity=0.206 Sum_probs=53.3
Q ss_pred EEEeCCCCeEEEEEeCCCCCCcccccccccCCccchHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCCCCCcchHHhH
Q 015305 128 VIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASR 207 (409)
Q Consensus 128 VVID~GS~~iKaGfage~~P~~~~~t~~~~G~~~~Pi~~~le~~~~~~~~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R 207 (409)
+=+|+|..++|+-...++ ..+.. -....|+|...+++-+.+- .+.-+...+-|.||--... . -..|
T Consensus 3 iG~DIGGAn~K~a~~~~~---g~~~~----~~~~~PlW~~~~~L~~~l~-~~~~~~~~~avtMTgELaD-----~-f~~k 68 (334)
T 3cet_A 3 LGIDIGGANTKITELHEN---GEFKV----HHLYFPMWKNNDKLAEVLK-TYSNDVSHVALVTTAELAD-----S-YETK 68 (334)
T ss_dssp EEEEEC--CEEEEEECST---TCCEE----EEC----------------------CCEEEEEECCC------------CT
T ss_pred eEEEecccceeeeeecCC---CceEE----EEEecCCcCCchHHHHHHH-HHHhhhccEEEEechhhhh-----h-hcCH
Confidence 568999999999654433 11111 1234699976555433221 2111224456777732211 0 1223
Q ss_pred HHHHHHHHHHHhh-cCCCeeeee---------------------ccchHHH--HHcCC-cceEEEEeCCceeEEEEEecC
Q 015305 208 RQLKDCFQQVLFD-LNVPAVCAI---------------------NQATLAL--YAAKR-TSGIVVNIGFQVTSVVPILHG 262 (409)
Q Consensus 208 ~~~~E~l~e~lFE-~~vpav~~~---------------------~~~vlal--~a~G~-~sglVVDiG~~~T~v~PV~dG 262 (409)
++=...+.+.+-+ |+.| ++|. ..+.+++ .+.-. .++++||||..+|+|+||.+|
T Consensus 69 ~eGV~~I~~~v~~~~~~~-v~i~~~dGG~l~~~~a~~~p~~~aaanw~ASa~~~A~~~~~~~llvDIGsTTTDIipi~~G 147 (334)
T 3cet_A 69 KEGVDNILNAAESAFGSN-ISVFDSNGNFISLESAKTNNMKVSASNWCGTAKWVSKNIEENCILVDMGSTTTDIIPIVEG 147 (334)
T ss_dssp THHHHHHHHHHHHHHTTC-EEEECSSSCEEETTHHHHCGGGTBCCSSHHHHHHHHHHTCSSEEEEEECSSCEEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCc-eEEEecCCCcccHHHHhhCHHHHHhcCHHHHHHHHHHhcCCCEEEEEcCcchhhhhhhcCC
Confidence 3222333344333 6554 2111 1111121 11212 679999999999999999999
Q ss_pred eEeec
Q 015305 263 KVMRK 267 (409)
Q Consensus 263 ~~l~~ 267 (409)
.++..
T Consensus 148 ~pl~g 152 (334)
T 3cet_A 148 KVVAE 152 (334)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99754
No 37
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=95.78 E-value=0.03 Score=54.07 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=34.1
Q ss_pred cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHH
Q 015305 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (409)
Q Consensus 242 ~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L 284 (409)
..++|||||+++|.++-+-+|.+... ..+++|.-.+++.+
T Consensus 131 ~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~f 170 (315)
T 3mdq_A 131 HISLAMDIGGGSVEFIIGNKNEILWK---QSFEIGGQRLIDRF 170 (315)
T ss_dssp CCEEEEEECSSCEEEEEECSSCEEEE---EEESCCHHHHHHHS
T ss_pred CCEEEEEeCCCceEEEEEECCeEeee---EEEechhhHHHHHh
Confidence 57899999999999998888877654 77999999888754
No 38
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=95.56 E-value=0.073 Score=54.86 Aligned_cols=140 Identities=15% Similarity=0.168 Sum_probs=76.0
Q ss_pred ceEEEeCCCCeEEEEEeCCC--CCCccc--ccccccCCc---cchH-HHHHHHHHHH------HHhhcccCCCCCCeEEE
Q 015305 126 GSVIIDGGSGYCKFGWSKYD--CPSGRT--ATFLEFGNI---ESPM-YSRLRHFFAT------IYSRMQVKPSTQPIVVS 191 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~--~P~~~~--~t~~~~G~~---~~Pi-~~~le~~~~~------~~~~L~v~p~~~pVll~ 191 (409)
..-|||+||+++|.-.+.-. .++.+. ...+..|+- ...+ .+.+++.++. +.+..+++ .+..+
T Consensus 16 ~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g~Ls~eai~r~~~~L~~F~~~~~~~~v~----~v~~v 91 (508)
T 3hi0_A 16 PVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQAQAQ----KLYVL 91 (508)
T ss_dssp CEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCS----EEEEE
T ss_pred eEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccCCcCHHHHHHHHHHHHHHHHHHHhCCCC----eEEEE
Confidence 45799999999999887533 222222 122344431 0011 1333333322 22333332 23332
Q ss_pred ecCCCCCCCcchH--HhHHHHHHHHHHHHhhcCCCeeeee---ccchHHHHHc----CCcceEEEEeCCceeEEEEEecC
Q 015305 192 IPICHYDDTENAK--ASRRQLKDCFQQVLFDLNVPAVCAI---NQATLALYAA----KRTSGIVVNIGFQVTSVVPILHG 262 (409)
Q Consensus 192 ep~~~~~~~~~~~--~~R~~~~E~l~e~lFE~~vpav~~~---~~~vlal~a~----G~~sglVVDiG~~~T~v~PV~dG 262 (409)
-.. +.+ .++..+.+.+.+. .|++ +-++ .++-++..|. ....++|||||+++|.++-+-+|
T Consensus 92 ATs-------A~R~A~N~~~fl~~i~~~---tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~ 160 (508)
T 3hi0_A 92 ATA-------AAREAENGPDFIREAEAI---LGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDK 160 (508)
T ss_dssp ECT-------HHHHSTTHHHHHHHHHHH---HTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETT
T ss_pred eeH-------HHHcCcCHHHHHHHHHHH---HCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCC
Confidence 211 111 2233344433333 7776 4444 3334433332 34578999999999999988888
Q ss_pred eEeecccEEEEccchhHHHHH
Q 015305 263 KVMRKVGVEVMGLGALKLTGY 283 (409)
Q Consensus 263 ~~l~~~~~~~~~iGG~~lt~~ 283 (409)
.+... ..+++|.-.+++.
T Consensus 161 ~~~~~---~Sl~lG~vrl~e~ 178 (508)
T 3hi0_A 161 SCGEG---ITLPLGGLRLSEQ 178 (508)
T ss_dssp EECCC---EEESCCHHHHHHH
T ss_pred eeeeE---EEecceEEehhhc
Confidence 87654 7799999888864
No 39
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=95.51 E-value=0.0042 Score=58.47 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=39.0
Q ss_pred eeeeccchHHHHHcC---CcceEEEEeCCceeEEEEEe-cCeEeecccEEEEccchhHHHHHHHHHHH
Q 015305 226 VCAINQATLALYAAK---RTSGIVVNIGFQVTSVVPIL-HGKVMRKVGVEVMGLGALKLTGYLRLLMQ 289 (409)
Q Consensus 226 v~~~~~~vlal~a~G---~~sglVVDiG~~~T~v~PV~-dG~~l~~~~~~~~~iGG~~lt~~L~~lL~ 289 (409)
+..++...+.++++. .....|+|+|.+.++++-+. +|.......-....-|+.+..+.+.+.|.
T Consensus 74 ~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~ 141 (276)
T 4ehu_A 74 DKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIE 141 (276)
T ss_dssp SEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHHT
T ss_pred CcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHhc
Confidence 456677777777664 34568999999999988773 45432210112234566666655555554
No 40
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.84 E-value=0.0076 Score=62.13 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHhhc-ChhhhhhhhcchhhhHhh
Q 015305 40 QIPWDVLIQIVKLI-GPKEAAKLCVVSKSWRAL 71 (409)
Q Consensus 40 ~lp~~~~~~i~~~l-~p~~~~~~~~~~~~~~~~ 71 (409)
.||.|++.+|+++| +++|++++++|||.|+.+
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 69999999999999 899999999999999988
No 41
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=94.71 E-value=0.13 Score=50.15 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=41.4
Q ss_pred cCCCeeeee---ccchHHHHHc----C----CcceEEEEeCCceeEEEEEec--CeEe--ecccEEEEccchhHHHHHH
Q 015305 221 LNVPAVCAI---NQATLALYAA----K----RTSGIVVNIGFQVTSVVPILH--GKVM--RKVGVEVMGLGALKLTGYL 284 (409)
Q Consensus 221 ~~vpav~~~---~~~vlal~a~----G----~~sglVVDiG~~~T~v~PV~d--G~~l--~~~~~~~~~iGG~~lt~~L 284 (409)
.|++ +-++ .++-++..|. . ...++|||||+++|.++-+.+ +.+. .. ....+++|+..+++.+
T Consensus 115 tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~-~~~SlplG~v~lt~~~ 191 (343)
T 3cer_A 115 LGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQ-GAFSMNIGSVRMTERH 191 (343)
T ss_dssp HSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCS-EEEEESCCHHHHHHHT
T ss_pred HCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccc-eeEEEehhHHHHHHHh
Confidence 6765 3444 3455555544 2 256899999999999997666 3321 01 2477999999999875
No 42
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=94.70 E-value=0.31 Score=50.20 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=45.0
Q ss_pred HHHHHhh-cCCCeeeeec---cchHHHHHc----CC-cceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHH
Q 015305 214 FQQVLFD-LNVPAVCAIN---QATLALYAA----KR-TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (409)
Q Consensus 214 l~e~lFE-~~vpav~~~~---~~vlal~a~----G~-~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L 284 (409)
+.+-+.+ .|++ +-++. ++-++..|. .. ..++|||||+++|.++-.-+|.+... ..+++|.-.+++.+
T Consensus 101 fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrlte~f 176 (513)
T 1u6z_A 101 FLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILV---ESRRMGCVSFAQLY 176 (513)
T ss_dssp HHHHHTTTCSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEEEE---EEESCCHHHHHHHH
T ss_pred HHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeeeEE---EEEeccHHHHHHHH
Confidence 3343444 7776 44443 334433332 22 26999999999999998777777643 77999999998765
No 43
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=94.34 E-value=0.12 Score=50.66 Aligned_cols=145 Identities=11% Similarity=0.092 Sum_probs=68.4
Q ss_pred ceEEEeCCCCeEEEEEeC---CCCCCcccc-------cccccCCc-cchHHHHHHHHHHHHHhhcccCCCCCCeEEEecC
Q 015305 126 GSVIIDGGSGYCKFGWSK---YDCPSGRTA-------TFLEFGNI-ESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPI 194 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfag---e~~P~~~~~-------t~~~~G~~-~~Pi~~~le~~~~~~~~~L~v~p~~~pVll~ep~ 194 (409)
..+|||+||..+|+=.+. +..++.+.. ...+.+.. ..| +.+++.++.+.+ +. .-...||.+.-..
T Consensus 4 ~~avID~GSns~Rl~I~~~~~~~~~~~i~~~~~~~~k~~~gLs~~~~~~--~~~~~~l~~f~~-~~-~~~~~~v~~~ATa 79 (353)
T 3aap_A 4 CIAVIDAGSTGSRLHIYSYDTDDTNTPIHIEEIWNKKIKPGFASIQPNS--VTIDAYLTMLLA-DA-PIHNIPVYFYATA 79 (353)
T ss_dssp EEEEEEECSSCEEEEEEEEEECTTSCEEEEEEEEEEEESSCGGGSCCSH--HHHHHHHHHHHT-TC-SCCSEEEEEEECH
T ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCceeEeeeeeeeccCCChhhcCCCH--HHHHHHHHHHHH-HH-hcCCCcEEEEecH
Confidence 468999999999985442 222222211 11122221 123 445555543222 11 1122355554221
Q ss_pred CCCCCCcchHHhHHHHHHHHHHHHhh-cCCC--eeeeec---cchHH----HHHcC------CcceEEEEeCCceeEEEE
Q 015305 195 CHYDDTENAKASRRQLKDCFQQVLFD-LNVP--AVCAIN---QATLA----LYAAK------RTSGIVVNIGFQVTSVVP 258 (409)
Q Consensus 195 ~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vp--av~~~~---~~vla----l~a~G------~~sglVVDiG~~~T~v~P 258 (409)
-. -+.+...++.+++.+.+.+-+ .-++ .+.++. ++.++ .|..+ ..+.+|||+|+++|.++-
T Consensus 80 a~---R~a~n~~~~~~l~~v~~~~~~~~~~~g~~v~VIsG~eEa~~~~~gv~~~l~~~~~~~~~t~~v~DiGGGStei~~ 156 (353)
T 3aap_A 80 GM---RLLPQSQQKKYYDELEYWFRQQSQWQLVEAKTITGNDEALFDWLAVNYKLDTLKSVQNKSVGVMDMGGASVQIVF 156 (353)
T ss_dssp HH---HTSCHHHHHHHHHHHHHHHHTCSSEEEEEEEECCHHHHHHHHHHHHHHHTTCSSSCCSSCEEEEEECSSEEEEEE
T ss_pred HH---hcCcHHHHHHHHHHHHHHHhhCCCCCCCeEEECChHHHHHHHHHHHHHHhhhccccccccEEEEEeCCCceEEEE
Confidence 10 112222355666666665422 1011 233332 23333 33333 246999999999999986
Q ss_pred Eec--CeEeecccEEEEccchh
Q 015305 259 ILH--GKVMRKVGVEVMGLGAL 278 (409)
Q Consensus 259 V~d--G~~l~~~~~~~~~iGG~ 278 (409)
... +.+... ....+++||.
T Consensus 157 ~~~~~~~~~~~-~~~sl~lG~~ 177 (353)
T 3aap_A 157 PMPKNAEISKH-NQVELNIYGQ 177 (353)
T ss_dssp ECCCCTTSCGG-GEEEEEETTE
T ss_pred ecCCccccCCC-ceEEEEECCc
Confidence 644 233322 2455666664
No 44
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=85.07 E-value=5.8 Score=40.01 Aligned_cols=134 Identities=13% Similarity=0.193 Sum_probs=65.1
Q ss_pred eEEEeCCCCeEEE---EEeCCC-CCCcccc---c-cc------ccCCccchHHHHHHHHHHHHHhhccc-CCCCCCeEEE
Q 015305 127 SVIIDGGSGYCKF---GWSKYD-CPSGRTA---T-FL------EFGNIESPMYSRLRHFFATIYSRMQV-KPSTQPIVVS 191 (409)
Q Consensus 127 ~VVID~GS~~iKa---Gfage~-~P~~~~~---t-~~------~~G~~~~Pi~~~le~~~~~~~~~L~v-~p~~~pVll~ 191 (409)
.||||.||..+|+ -|..+. .+..++. + -+ .+++-..-+.+.++.+++...+..-. .-...||.+.
T Consensus 36 ~iviDaGSsgtRl~VY~~~~~~~~~~~~~~~~~~~k~~gpGlSs~~~~p~~~~~~l~~Ll~~a~~~vp~~~~~~tpi~~~ 115 (452)
T 3zx3_A 36 GIVLDAGSSHTNLYIYKWPAEKENDTGVVQQLEECQVKGPGISKYAQKTDEIAAYLAECMKMSTERIPASKQHQTPVYLG 115 (452)
T ss_dssp EEEEEECSSCEEEEEEEEECCCTTCCCCCEEEEEEECSSSCGGGGTTCGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEEE
T ss_pred EEEEEcCCCCcEEEEEEEeCCcCCCccccceeeeecccCCChhccCCCHHHHHHHHHHHHHHHHHhCCHHHcCCccEEEE
Confidence 4999999999996 333221 1221111 0 01 12221111234555555543322110 1134677765
Q ss_pred ecCCCCCCCcch---HHhHHHHHHHHHHHHhh--cCCCeeeeecc---chHHH----HHcCC------cceEEEEeCCce
Q 015305 192 IPICHYDDTENA---KASRRQLKDCFQQVLFD--LNVPAVCAINQ---ATLAL----YAAKR------TSGIVVNIGFQV 253 (409)
Q Consensus 192 ep~~~~~~~~~~---~~~R~~~~E~l~e~lFE--~~vpav~~~~~---~vlal----~a~G~------~sglVVDiG~~~ 253 (409)
-.--. .+.+ ..+++++++.+.+.+-+ |.+..+.++.. ++.+- |..|. .+..+||+|+++
T Consensus 116 ATAgm---R~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~vnyllg~l~~~~~~t~g~lDlGGgS 192 (452)
T 3zx3_A 116 ATAGM---RLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGAS 192 (452)
T ss_dssp ECHHH---HHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHHHHHHTTTTC---CCCCEEEEECSSE
T ss_pred eeHHH---hhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHHHHhhhccccCCCCCceEEEecCCCc
Confidence 32110 0111 12345566666665432 22345666643 33332 33342 567788999999
Q ss_pred eEEEEEecCe
Q 015305 254 TSVVPILHGK 263 (409)
Q Consensus 254 T~v~PV~dG~ 263 (409)
|+|+-..++.
T Consensus 193 tQi~f~~~~~ 202 (452)
T 3zx3_A 193 TQITFVPLNS 202 (452)
T ss_dssp EEEEECCSSC
T ss_pred eEEEeccCCC
Confidence 9998765553
No 45
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=84.53 E-value=5.1 Score=40.45 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=18.3
Q ss_pred cceEEEEeCCceeEEEEEecCe
Q 015305 242 TSGIVVNIGFQVTSVVPILHGK 263 (409)
Q Consensus 242 ~sglVVDiG~~~T~v~PV~dG~ 263 (409)
.+..|+|+|+++|.++-.-++.
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4679999999999999776554
No 46
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=83.64 E-value=11 Score=34.98 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=15.4
Q ss_pred EEEeCCCCeEEEEEeCCC
Q 015305 128 VIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 128 VVID~GS~~iKaGfage~ 145 (409)
++||+|..++|.|+-.++
T Consensus 3 L~IDIGNT~ik~gl~~~~ 20 (268)
T 2h3g_X 3 FVLDVGNTNAVLGVFEEG 20 (268)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred EEEEECcCcEEEEEEECC
Confidence 789999999999987544
No 47
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=82.38 E-value=17 Score=33.79 Aligned_cols=19 Identities=26% Similarity=0.073 Sum_probs=16.1
Q ss_pred eEEEeCCCCeEEEEEeCCC
Q 015305 127 SVIIDGGSGYCKFGWSKYD 145 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~ 145 (409)
-++||+|..++|+|.-.++
T Consensus 4 lL~IDIGNT~iK~gl~d~~ 22 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGD 22 (266)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 3899999999999987544
No 48
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=79.89 E-value=22 Score=33.17 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=36.1
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.++.-+++++- +..+.++|-+|.+ +-..-+.+|.+++.
T Consensus 108 ~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~G 159 (326)
T 2qm1_A 108 LGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLHG 159 (326)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECCC
T ss_pred hCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEeec
Confidence 7888 88999999988763 4578999999988 44666789988763
No 49
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=77.75 E-value=29 Score=31.70 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=19.0
Q ss_pred CcceEEEEeCCceeEEEEEecCeEee
Q 015305 241 RTSGIVVNIGFQVTSVVPILHGKVMR 266 (409)
Q Consensus 241 ~~sglVVDiG~~~T~v~PV~dG~~l~ 266 (409)
....+|||+|...|--+- -+|..+-
T Consensus 121 ~~~~iVvD~GTA~T~d~v-~~g~~lG 145 (249)
T 3bex_A 121 GKNGIIIDMGTATTVDLV-VNGSYEG 145 (249)
T ss_dssp CSCEEEEEESSEEEEEEE-ETTEEEE
T ss_pred CCCEEEEEcCCceEEEEE-eCCeEee
Confidence 468999999988776554 7876654
No 50
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=71.52 E-value=55 Score=30.62 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=35.9
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.+++-+++++- +..+.++|-+|.+ .-..-|.+|.+++.
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~G 147 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIIIGNKLRRG 147 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECCC
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEECCEEecC
Confidence 8998 88999998888762 3578899999987 44556789998864
No 51
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=69.66 E-value=47 Score=32.16 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=69.6
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcccccccccC-CccchHHHHHHHHHHHHHhhcccCCC---------------CCCeE
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFG-NIESPMYSRLRHFFATIYSRMQVKPS---------------TQPIV 189 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~~~t~~~~G-~~~~Pi~~~le~~~~~~~~~L~v~p~---------------~~pVl 189 (409)
-.+.||+|...+|++....+. +.......... .-...+++.+...++.+.++.+.++. +..++
T Consensus 86 ~~lgiDiG~t~i~~~l~d~~G-~il~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~g~v 164 (406)
T 1z6r_A 86 HYLSLRISRGEIFLALRDLSS-KLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIV 164 (406)
T ss_dssp EEEEEEEETTEEEEEEEETTC-CEEEEEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETTTTEE
T ss_pred EEEEEEEcCCEEEEEEEcCCC-CEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEEEeecCEeCCCCEE
Confidence 468999999999999875432 11111000010 01112345555555554443322111 12233
Q ss_pred EEecCCCCCCCcchHHhHHHHHHHHHHHHhhcCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecC
Q 015305 190 VSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHG 262 (409)
Q Consensus 190 l~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG 262 (409)
+.-+.. + ......+.+.+-+. +++| +++.+++-+++++- +..+.++|-+|.+. -..-|.+|
T Consensus 165 ~~~~~l-~------~w~~~~l~~~l~~~---~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGi-G~giv~~G 232 (406)
T 1z6r_A 165 HRMPFY-E------DVKEMPLGEALEQH---TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNV-GAGVITDG 232 (406)
T ss_dssp EECTTC-T------TCSSBCHHHHHHHH---HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSE-EEEEEETT
T ss_pred ecCCCC-C------CccCCCHHHHHHHH---HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCcE-EEEEEECC
Confidence 322211 0 00111233334443 8898 88999998887763 35788999999874 46667899
Q ss_pred eEeec
Q 015305 263 KVMRK 267 (409)
Q Consensus 263 ~~l~~ 267 (409)
.++..
T Consensus 233 ~l~~G 237 (406)
T 1z6r_A 233 HLLHA 237 (406)
T ss_dssp EETTT
T ss_pred EEeec
Confidence 88764
No 52
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=69.03 E-value=19 Score=35.09 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=71.2
Q ss_pred eEEEEeCCceeEEEEEe-cCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhcccccch-HHhhhc
Q 015305 244 GIVVNIGFQVTSVVPIL-HGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADY-KAELSK 321 (409)
Q Consensus 244 glVVDiG~~~T~v~PV~-dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~ve~iKe~~c~v~~d~-~~e~~~ 321 (409)
-||||||.+. +++-|. +|...+ +.-..+||-.+-.... +|... . +.+.+-++-.+=-.-..|. -.++
T Consensus 177 yllVnIGsGv-Siikv~~~~~f~r---vgG~siGGGTflGL~~-lLtg~-~---~~dEl~~lA~~Gd~~~vDllV~DI-- 245 (360)
T 2i7n_A 177 MLLVNMGSGV-SILAVYSKDNYKR---VTGTSLGGGTFLGLCC-LLTGC-E---TFEEALEMAAKGDSTNVDKLVKDI-- 245 (360)
T ss_dssp EEEEEESSSE-EEEEEEETTEEEE---EEEESCSHHHHHHHHH-HHHCC-C---SHHHHHHHHHHCCGGGTSEEHHHH--
T ss_pred eEEEEeCCCc-EEEEEcCCCCEEE---eccccCccHhHHHHHH-HHhCC-C---CHHHHHHHHHcCCCCcccceeeec--
Confidence 6799999977 788786 554433 3557899998888777 44321 1 1222222211100000000 0000
Q ss_pred cccceEE---eCCCcEEEe-cceeeccccccccCC-cCCcc----CCchHHHHHHHHhcCCCCCccchHhhcCCcEEecc
Q 015305 322 DTQASLE---IAGEGWFTL-SKERFQTGEILFQPR-MADVR----TMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGG 392 (409)
Q Consensus 322 ~~~~~y~---Lpdg~~i~l-~~erf~~~E~LF~P~-~~g~~----~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG 392 (409)
-...|. ||....-.. ++. +... ..+.. ..||..+|.+.|-.... +..++.=.++|+++||
T Consensus 246 -Yg~~y~~~gL~~~~~ASsFGk~--------~~~~~~~~~~~eDIa~gll~sVa~~I~~lA~--l~A~~~~i~~IvftGg 314 (360)
T 2i7n_A 246 -YGGDYERFGLQGSAVASSFGNM--------MSKEKRDSISKEDLARATLVTITNNIGSIAR--MCALNENIDRVVFVGN 314 (360)
T ss_dssp -HSSCBGGGTBCTTSEEETTTTT--------TSHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHTCCCEEEESG
T ss_pred -ccCcccccCCCccceeehhhhH--------hhHhhhcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCeEEEeCc
Confidence 001222 442222221 111 1100 00111 34666777666544421 1012333458999999
Q ss_pred -CCCCccHHHHHhhhh
Q 015305 393 -SACLPGLAGIRNSFN 407 (409)
Q Consensus 393 -~S~ipGf~eRL~~E~ 407 (409)
.+.-|++.+.|++.+
T Consensus 315 fla~n~~~~~~L~~~l 330 (360)
T 2i7n_A 315 FLRINMVSMKLLAYAM 330 (360)
T ss_dssp GGCSSSHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHH
Confidence 999999999999876
No 53
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=68.88 E-value=45 Score=32.70 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=35.6
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.+++-+++++- +..+.++|-+|.+. -..-|.+|.++..
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGi-G~giv~~G~l~~G 259 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHGL-GAGIVLDGRVLQG 259 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSE-EEEEEETTEECCT
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCcE-EEEEEECCEEeeC
Confidence 8898 88999998888763 45789999999874 4566789988763
No 54
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=68.85 E-value=4.3 Score=38.37 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=28.0
Q ss_pred ceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHH
Q 015305 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQ 289 (409)
Q Consensus 243 sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~ 289 (409)
..+|||||.+.+ ++-+-++...+ ......||-.+-+.+..++.
T Consensus 111 ~~~vIdIGg~ds-ii~v~~~~f~r---~~g~aaGgGtFl~l~a~ll~ 153 (287)
T 2ews_A 111 DYIFANVGTGTS-LHYFDGQSQRR---VGGIGTGGGMIQGLGYLLSQ 153 (287)
T ss_dssp CEEEEEESSSEE-EEEECSSCEEE---EEEESCSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCeE-EEEEcCCceEE---cCccccchhhHHHHHHHHhC
Confidence 569999999877 77665453322 24456787666666665555
No 55
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=65.11 E-value=50 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=35.2
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.+++-+++++- +..+.++|-+|.+. -..-|.+|.+...
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtGi-G~gii~~G~l~~G 182 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTGI-GGGIIHQHELIHG 182 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSSE-EEEEEETTEECCC
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCCE-EEEEEECCEEecC
Confidence 7888 88999998887763 35688999999874 4566789988763
No 56
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=63.19 E-value=93 Score=28.76 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=34.5
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.++.-+++++- +..+.++|-+|.+.- ..-|.+|.+++.
T Consensus 98 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtGiG-~gii~~g~l~~G 149 (302)
T 3vov_A 98 TGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTGIG-GGVVLGGRVLRG 149 (302)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSSEE-EEEEETTEECCC
T ss_pred hCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCcee-EEEEECCEEeeC
Confidence 8998 88999988887653 357889999998754 444679988764
No 57
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=62.14 E-value=96 Score=28.41 Aligned_cols=46 Identities=15% Similarity=-0.013 Sum_probs=35.5
Q ss_pred cCC-CeeeeeccchHHHHH-cCCcceEEEEeCCceeEEEEEecCeEee
Q 015305 221 LNV-PAVCAINQATLALYA-AKRTSGIVVNIGFQVTSVVPILHGKVMR 266 (409)
Q Consensus 221 ~~v-pav~~~~~~vlal~a-~G~~sglVVDiG~~~T~v~PV~dG~~l~ 266 (409)
++. -.+.+.+++.+++++ .|..++++|=+|.+.--..-+.+|....
T Consensus 86 ~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~~ 133 (291)
T 1zbs_A 86 LPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKAN 133 (291)
T ss_dssp STTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEEE
T ss_pred cCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEEE
Confidence 774 248999999999998 5778899998998875444456898765
No 58
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=61.23 E-value=2.5 Score=33.35 Aligned_cols=47 Identities=13% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCHHHHHHHHhhcChhhhhhhhcchhhhHhhhcChHHHHHHHhhcCCCC
Q 015305 41 IPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPW 89 (409)
Q Consensus 41 lp~~~~~~i~~~l~p~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (409)
.|.|++.-||..-+|..|.++=.-|-+ .+-..+.||+.|+.|+-+.+
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~ 59 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEE 59 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCS
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCccc
Confidence 599999999999999999999988873 36678999999999988755
No 59
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=57.94 E-value=1.2e+02 Score=27.99 Aligned_cols=125 Identities=12% Similarity=0.127 Sum_probs=67.4
Q ss_pred eEEEeCCCCeEEEEEeCCCCCCcccccccccCCcc-ch--HHHHHHHHHHHHHhhcccCCCCC---CeEEEecCCCCCCC
Q 015305 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIE-SP--MYSRLRHFFATIYSRMQVKPSTQ---PIVVSIPICHYDDT 200 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~~P~~~~~t~~~~G~~~-~P--i~~~le~~~~~~~~~L~v~p~~~---pVll~ep~~~~~~~ 200 (409)
.+.||+|...+|++....+.- ..........+.. .| .++.+...++.+.++.+.++.+- .+-+..|-..
T Consensus 13 ~lGiDiGgT~i~~~l~d~~G~-il~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~igig~pG~v---- 87 (305)
T 1zc6_A 13 LIGVDGGGTGTRIRLHASDGT-PLAMAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVH---- 87 (305)
T ss_dssp EEEEEECSSCEEEEEEETTCC-EEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCC----
T ss_pred EEEEEcCccceEEEEEcCCCC-EEEEEeCCCCCcccCHHHHHHHHHHHHHHHHHhcCCChhhhccceEEEEecCCC----
Confidence 588999999999998754321 1110000000111 11 23444445555555555444432 2445555421
Q ss_pred cchHHhHHHHHHHHHHHHhhc--CCCeeeeeccchHHHHHc-CCcceEEEEeCCceeEEEEEecCeEee
Q 015305 201 ENAKASRRQLKDCFQQVLFDL--NVPAVCAINQATLALYAA-KRTSGIVVNIGFQVTSVVPILHGKVMR 266 (409)
Q Consensus 201 ~~~~~~R~~~~E~l~e~lFE~--~vpav~~~~~~vlal~a~-G~~sglVVDiG~~~T~v~PV~dG~~l~ 266 (409)
.+...+ . +-+. + ++| +++.++.-+++++. +..++++|-+|.+..-..-+.+|....
T Consensus 88 -~~~~~~----~-l~~~---~~~~~p-v~v~NDa~aaa~ge~~~~~~v~v~~GTGigg~~i~~~G~~~~ 146 (305)
T 1zc6_A 88 -NRQWAG----E-FESQ---APGFAR-LSLATDGYTTLLGAHGGQPGIIVALGTGSIGEALYPDGSHRE 146 (305)
T ss_dssp -TTSHHH----H-HHHT---CCCCSE-EEEECHHHHHHHHHTTTSSEEEEEESSSEEEEEECTTSCEEE
T ss_pred -chHHHH----H-HHHh---CCCCce-EEEECCHHHHHHhhcCCCCeEEEEecCCeEEEEEeCCCcEEE
Confidence 111111 1 1111 5 455 88999999999884 567889999998874333234887654
No 60
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=56.33 E-value=1.3e+02 Score=28.09 Aligned_cols=45 Identities=20% Similarity=0.115 Sum_probs=35.1
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.+++-+++++- +..+.++|-+|.+. -..-|.+|.++..
T Consensus 120 ~~~p-V~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtGi-G~gii~~G~l~~G 171 (327)
T 4db3_A 120 IGRS-VKIENDANCFALSEAWDEELQDAPSVMGLILGTGF-GGGLIYEGKVFSG 171 (327)
T ss_dssp HSSC-CEEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSSE-EEEEEETTEECCC
T ss_pred HCCC-EEEecchhHHHHHHHHhCCCCCCCcEEEEEeCccc-eEEEEECCEEeec
Confidence 8998 89999999888764 35678999999874 4455779988764
No 61
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=55.87 E-value=81 Score=30.24 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=35.3
Q ss_pred cCCCeeeeeccchHHHHHc---C--CcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA---K--RTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~---G--~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.+++-+++++- | +.+.++|-+|.+. -..-|.+|.++..
T Consensus 188 ~~~p-V~v~NDanaaalaE~~~g~~~~~~v~l~~GtGi-G~giv~~G~l~~G 237 (380)
T 2hoe_A 188 YGIE-VWVENDADMGAVGEKWYTKRDDSFAWILTGKGI-GAGIIIDGELYRG 237 (380)
T ss_dssp HCSE-EEEEEHHHHHHHHHHHHTTCCSCEEEEEESSSC-EEEEEETTEECCC
T ss_pred hCCC-EEEechHHHHHHHHHHhCCCCCcEEEEEeCCce-EEEEEECCEEecc
Confidence 8888 88999998887763 3 3789999999874 4666789988764
No 62
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=54.61 E-value=5.5 Score=41.92 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=23.2
Q ss_pred ceEEEeCCCCeEEEEEeCCCCCCcc
Q 015305 126 GSVIIDGGSGYCKFGWSKYDCPSGR 150 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage~~P~~~ 150 (409)
.+|||.-||.++|+|+|.|..|..+
T Consensus 41 ~~IVIHpGS~~lRIG~AsD~~P~~i 65 (655)
T 4am6_A 41 ATIVIHPGSNSIKIGFPKDDHPVVV 65 (655)
T ss_dssp GEEEEECCSSEEEEECTTSSSCEEE
T ss_pred CeEEEcCCCcceeeeecCCCCCccc
Confidence 7899999999999999999999854
No 63
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=50.37 E-value=1.6e+02 Score=27.36 Aligned_cols=128 Identities=13% Similarity=0.038 Sum_probs=66.7
Q ss_pred eEEEeCCCCeEEEEEeCCCCCCcccccccccCCc--cch--HHHHHHHHHHHHHhhcccCCC-C-CCeEEEecCCCCCCC
Q 015305 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNI--ESP--MYSRLRHFFATIYSRMQVKPS-T-QPIVVSIPICHYDDT 200 (409)
Q Consensus 127 ~VVID~GS~~iKaGfage~~P~~~~~t~~~~G~~--~~P--i~~~le~~~~~~~~~L~v~p~-~-~pVll~ep~~~~~~~ 200 (409)
.+.||+|...+|++....+.- ..........+. ..| +++.+...++.+.++.+.++. . ..+-+..|-..
T Consensus 8 ~lgiDiGgt~~~~~l~d~~g~-i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~v---- 82 (347)
T 2ch5_A 8 YGGVEGGGTRSEVLLVSEDGK-ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGD---- 82 (347)
T ss_dssp EEEEEECTTCEEEEEEETTSC-EEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTT----
T ss_pred EEEEEcCccceEEEEEeCCCC-EEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCC----
Confidence 588999999999998754321 111100000011 011 234444444444444444433 1 23445555421
Q ss_pred cchHHhHHHHHHHHHHHHhhcC---CCeeeeeccchHHHHHcCCcceEEEEeCCceeEEEEEecCeEe
Q 015305 201 ENAKASRRQLKDCFQQVLFDLN---VPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVM 265 (409)
Q Consensus 201 ~~~~~~R~~~~E~l~e~lFE~~---vpav~~~~~~vlal~a~G~~sglVVDiG~~~T~v~PV~dG~~l 265 (409)
.+ .....+.+.+-+. ++ .| +++.++..+++++....++++|-+|.+.--..-..+|...
T Consensus 83 -d~-~~~~~l~~~l~~~---~~~~~~p-v~v~NDa~aaa~a~~~~~~v~v~~GTGig~~~v~~~G~~c 144 (347)
T 2ch5_A 83 -QE-DAGRILIEELRDR---FPYLSES-YLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES 144 (347)
T ss_dssp -CH-HHHHHHHHHHHHH---CTTSBSC-EEEEEHHHHHHHHHCSSCEEEEEESSSEEEEEECTTSCEE
T ss_pred -ch-HHHHHHHHHHHHh---cCCCCce-EEEECcHHHHHHhhCCCCcEEEEEcCCceeEEEcCCCCEE
Confidence 11 1122333333333 75 66 8899999999888544678899999876543322366543
No 64
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=48.09 E-value=88 Score=28.58 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.4
Q ss_pred cCCcEEeccCCCCccHHHHHhhhhc
Q 015305 384 FKTVILTGGSACLPGLAGIRNSFNK 408 (409)
Q Consensus 384 ~~NIvLtGG~S~ipGf~eRL~~E~k 408 (409)
-+.|+++||.+.-|++.+++.+.+.
T Consensus 209 ~~~i~~~GG~a~n~~~~~~~~~~lg 233 (270)
T 1hux_A 209 VKDVVMTGGVAQNYGVRGALEEGLG 233 (270)
T ss_dssp CSSEEEESGGGGCHHHHHHHHHHHC
T ss_pred CCeEEEeCccccCHHHHHHHHHHHC
Confidence 3679999999999999999987653
No 65
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=44.23 E-value=74 Score=29.48 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=15.0
Q ss_pred eEEEeCCCCeEEEEEeC
Q 015305 127 SVIIDGGSGYCKFGWSK 143 (409)
Q Consensus 127 ~VVID~GS~~iKaGfag 143 (409)
-++||+|..++|.|.-.
T Consensus 25 ~L~IDiGNT~ik~g~~~ 41 (271)
T 2f9w_A 25 ILELDCGNSLIKWRVIE 41 (271)
T ss_dssp EEEEEECSSCEEEEEEE
T ss_pred EEEEEeCCCeeEEEEEe
Confidence 39999999999999864
No 66
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=43.94 E-value=8.4 Score=25.90 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.8
Q ss_pred cccCCCHHHHHHHHhhcChhhh
Q 015305 37 AFDQIPWDVLIQIVKLIGPKEA 58 (409)
Q Consensus 37 ~~~~lp~~~~~~i~~~l~p~~~ 58 (409)
-|.+||+|+|..||+--+..++
T Consensus 20 VF~~LP~dIQ~Ells~~~~e~~ 41 (48)
T 2kwv_A 20 VFKQLPADIQEEILSGKSRENL 41 (48)
T ss_dssp GTTTSCHHHHHHHTTCCCSCCC
T ss_pred HHHHCcHHHHHHHHhcchHHhh
Confidence 5999999999999986655543
No 67
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=43.89 E-value=2e+02 Score=26.56 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=35.4
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.++.-+++++- +..+.++|-+|.+. -..-|.+|.++..
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtGi-G~giv~~G~l~~G 171 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVLNGKPITG 171 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSSE-EEEEEETTEEECC
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCcE-EEEEEECCEEeec
Confidence 7888 88999999988863 35688999999874 3555789988764
No 68
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=39.14 E-value=12 Score=33.92 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=41.0
Q ss_pred cCCCHHHHHHHHhhcChhhh-hhhhcchhhhHhhhcChHHHHHHHhhcCCC--Ccccccccccc
Q 015305 39 DQIPWDVLIQIVKLIGPKEA-AKLCVVSKSWRALVSDNRLWIFFLQHQQEP--WDSIFFGETTL 99 (409)
Q Consensus 39 ~~lp~~~~~~i~~~l~p~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~ 99 (409)
..+|-|-+..+++ +. |-|+.+|+|+-- ..|++.|. ..|| |..-=|.|..-
T Consensus 85 ~~i~~~~la~~ik-----~~~~TLRqfCr~yAk-----vvWN~ml~-n~PPAnWa~~Gf~~~tK 137 (226)
T 4dox_A 85 PEISLAQLASIVK-----ASGTSLRKFCRYFAP-----IIWNLRTD-KMAPANWEASGYKPSAK 137 (226)
T ss_dssp TTCBHHHHHHHHH-----HTTCCHHHHHHTTHH-----HHHHHHTT-TSCCTTTTTTTCCGGGG
T ss_pred CCccHHHHHHHHH-----HhCCCHHHHHHHhhH-----HHHHHHhc-cCCcHHHHHcCCCccce
Confidence 5688898888876 56 889999999986 57999999 8888 98877776643
No 69
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=38.19 E-value=2.1e+02 Score=27.48 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.4
Q ss_pred ceEEEEeCCceeEEEEEecCeEeec
Q 015305 243 SGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 243 sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+.+++-+|.+. ....|.+|.++..
T Consensus 177 ~~v~~~lGtGi-G~g~i~~G~~~~G 200 (381)
T 1saz_A 177 NLVVAHMGGGI-SIAAHRKGRVIDV 200 (381)
T ss_dssp EEEEEEESSSE-EEEEEETTEEEEE
T ss_pred CEEEEEeCCCc-EEEEEECCEEEEe
Confidence 88999999876 5666889998864
No 70
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=36.99 E-value=63 Score=29.53 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=36.6
Q ss_pred cCCCeeeeeccchHHHHHc-----CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-----KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-----G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.++.-+++++- +..+.++|-+|.+.- ..-|.+|.+++.
T Consensus 94 ~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtGiG-~giv~~G~l~~G 143 (292)
T 2gup_A 94 YQLP-VHLENDANCVGLSELLAHPELENAACVVIGTGIG-GAMIINGRLHRG 143 (292)
T ss_dssp GCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSSEE-EEEEETTEEECC
T ss_pred cCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCceE-EEEEECCEEEec
Confidence 8998 88999999998883 567899999998744 556789988764
No 71
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=35.16 E-value=2.6e+02 Score=25.46 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=35.0
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| |++.++.-+++++- +..+.++|-+|.+.- ..-|.+|.+++.
T Consensus 97 ~~~p-V~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtGiG-~giv~~G~l~~G 148 (297)
T 4htl_A 97 TGLP-VAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGIG-GGIFSNGELVRG 148 (297)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEE-EEEEETTEECCC
T ss_pred HCcC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECcceE-EEEEECCEEEec
Confidence 8999 88999988877653 357889999998755 445779998864
No 72
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=29.14 E-value=1.2e+02 Score=27.43 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=35.1
Q ss_pred cCCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.++.-+++++- +. +.++|.+|.+. -..-|.+|.+++.
T Consensus 96 ~~~p-v~v~NDa~aaa~~e~~~g~~~~~-~~v~l~~GtGi-G~gii~~G~l~~G 146 (289)
T 2aa4_A 96 TNLP-TIAINDAQAAAWAEFQALDGDIT-DMVFITVSTGV-GGGVVSGCKLLTG 146 (289)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSCTTCC-CEEEEEESSSE-EEEEEETTEEECC
T ss_pred HCCC-EEEechHHHHHHHHHHhCCCCCc-eEEEEEeCccE-EEEEEECCEEeeC
Confidence 8888 88999998888763 24 89999999884 5566789998864
No 73
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=24.33 E-value=2.5e+02 Score=23.25 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=14.9
Q ss_pred ceEEEeCCCCeEEEEEeCC
Q 015305 126 GSVIIDGGSGYCKFGWSKY 144 (409)
Q Consensus 126 ~~VVID~GS~~iKaGfage 144 (409)
..+=||.|+.+|.++.+..
T Consensus 4 riLGiDpG~~riGvAv~d~ 22 (150)
T 1vhx_A 4 RILGLDLGTKTLGVALSDE 22 (150)
T ss_dssp EEEEEEECSSEEEEEEECT
T ss_pred EEEEEEccCCEEEEEEEEC
Confidence 3578999999987777654
No 74
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=22.82 E-value=43 Score=25.23 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcChhhhhhhhcchhhhHh
Q 015305 43 WDVLIQIVKLIGPKEAAKLCVVSKSWRA 70 (409)
Q Consensus 43 ~~~~~~i~~~l~p~~~~~~~~~~~~~~~ 70 (409)
..++-.+...++|.++|+.=..|+.+|-
T Consensus 59 ~~ii~~l~~~~~P~~iC~~l~lC~~~~~ 86 (91)
T 2qyp_A 59 SSILSILLEEVSPELVCSMLHLCSGTRH 86 (91)
T ss_dssp HHHHHHHHHTCCHHHHHHTTTCC-----
T ss_pred HHHHHHHHHcCCHHHHHhhcCCCCCccc
Confidence 4556667789999999999999999884
No 75
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=22.29 E-value=4.5e+02 Score=24.03 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=32.8
Q ss_pred cCCCeeeeeccchHHHHHc------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 LNVPAVCAINQATLALYAA------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~~vpav~~~~~~vlal~a~------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+++| +++.+++-+++++. +..+.+.|-+|.+.=. .-|.+|.+++.
T Consensus 107 ~~~p-v~v~NDanaaa~~e~~~~~~~~~~~~~v~~GtGiG~-gii~~G~l~~G 157 (310)
T 3htv_A 107 LNCP-VEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGMGF-AVWMNGAPWTG 157 (310)
T ss_dssp HTSC-EEEEEHHHHHHHHHHHHTTCTTSCEEEEEESSSEEE-EEEETTEEECC
T ss_pred hCCC-EEEeeHHHHHHHHHHhhcccCCceEEEEEeceeEEE-EEEECCEEeec
Confidence 8998 88888888876532 3456788899976543 44779998864
No 76
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=20.51 E-value=2e+02 Score=26.58 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=35.7
Q ss_pred c-CCCeeeeeccchHHHHHc-------CCcceEEEEeCCceeEEEEEecCeEeec
Q 015305 221 L-NVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (409)
Q Consensus 221 ~-~vpav~~~~~~vlal~a~-------G~~sglVVDiG~~~T~v~PV~dG~~l~~ 267 (409)
+ ++| +++.+++-+++++- +..+.++|-+|.+ .-..-|.+|.+++.
T Consensus 117 ~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~~G~l~~G 169 (321)
T 3r8e_A 117 FPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMMNGKLFIG 169 (321)
T ss_dssp CTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECCC
T ss_pred cCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEecC
Confidence 8 898 88999998887752 4578899999988 44556789998874
No 77
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=20.37 E-value=2.6e+02 Score=25.52 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=31.8
Q ss_pred eEEEEeCCceeEEEEEecCeEeecccEEEEc---cchhHHHHHHHHHHHhcCC
Q 015305 244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMG---LGALKLTGYLRLLMQQNNI 293 (409)
Q Consensus 244 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~---iGG~~lt~~L~~lL~~~~~ 293 (409)
-|+||||.+.+.+.-+-++..+.. .+++ ...+.+...+.+++...+.
T Consensus 4 lL~IDIGNT~iK~gl~d~~~l~~~---~r~~T~~~t~de~~~~l~~ll~~~~~ 53 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGDEIKLR---FRHTSKVSTSDELGIFLKSVLRENNC 53 (266)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEE---EEEECSCCCHHHHHHHHHHHHHTTTC
T ss_pred EEEEEECCCeEEEEEEECCEEEEE---EEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 389999999998876666665544 3333 3355666677788877654
Done!