Query 015306
Match_columns 409
No_of_seqs 469 out of 3617
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 1.4E-64 3.1E-69 469.5 28.7 326 80-409 18-346 (346)
2 KOG1500 Protein arginine N-met 100.0 6.5E-45 1.4E-49 331.5 20.0 310 79-395 134-453 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 7.4E-42 1.6E-46 338.7 23.5 274 96-394 152-447 (448)
4 KOG0822 Protein kinase inhibit 100.0 2.8E-28 6E-33 234.8 18.2 271 100-395 338-625 (649)
5 PTZ00357 methyltransferase; Pr 99.9 3.6E-21 7.7E-26 190.6 22.7 285 99-393 644-1036(1072)
6 KOG1501 Arginine N-methyltrans 99.9 6.1E-22 1.3E-26 187.0 12.3 258 96-359 34-320 (636)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 3E-20 6.5E-25 165.5 6.6 154 67-231 9-163 (243)
8 COG2226 UbiE Methylase involve 99.8 4.5E-19 9.8E-24 160.9 12.2 114 109-226 38-153 (238)
9 PLN02396 hexaprenyldihydroxybe 99.8 2.5E-18 5.4E-23 164.3 11.1 154 68-229 74-235 (322)
10 PF12847 Methyltransf_18: Meth 99.7 2.4E-17 5.3E-22 134.0 13.0 106 122-228 1-110 (112)
11 PF01209 Ubie_methyltran: ubiE 99.7 1.5E-17 3.2E-22 152.4 10.4 114 110-227 35-151 (233)
12 KOG1270 Methyltransferases [Co 99.7 8.5E-18 1.8E-22 150.7 6.8 148 71-229 35-195 (282)
13 PF08241 Methyltransf_11: Meth 99.6 1.9E-15 4E-20 118.5 10.8 94 127-227 1-95 (95)
14 PF13847 Methyltransf_31: Meth 99.6 3.1E-15 6.6E-20 128.7 12.8 104 121-229 2-110 (152)
15 PRK00107 gidB 16S rRNA methylt 99.6 4.1E-15 8.8E-20 131.6 13.8 100 120-228 43-144 (187)
16 PLN02233 ubiquinone biosynthes 99.6 4E-15 8.8E-20 139.3 14.3 116 110-228 61-181 (261)
17 PLN02244 tocopherol O-methyltr 99.6 4.7E-15 1E-19 144.0 14.9 105 121-228 117-222 (340)
18 PRK11207 tellurite resistance 99.6 6.5E-15 1.4E-19 132.1 13.5 103 120-226 28-131 (197)
19 PF06325 PrmA: Ribosomal prote 99.6 2.9E-15 6.3E-20 141.0 11.3 112 105-228 146-258 (295)
20 PF02353 CMAS: Mycolic acid cy 99.6 1.3E-14 2.7E-19 136.1 14.7 115 109-228 49-165 (273)
21 COG4076 Predicted RNA methylas 99.6 8.8E-15 1.9E-19 124.4 12.2 136 95-239 9-145 (252)
22 TIGR02752 MenG_heptapren 2-hep 99.6 1.2E-14 2.7E-19 133.8 14.2 115 109-227 32-149 (231)
23 TIGR00477 tehB tellurite resis 99.6 5.9E-15 1.3E-19 132.2 11.7 103 119-226 27-130 (195)
24 PF03848 TehB: Tellurite resis 99.6 1.5E-14 3.2E-19 127.4 13.6 105 118-227 26-131 (192)
25 COG2264 PrmA Ribosomal protein 99.6 5.5E-15 1.2E-19 137.7 11.4 115 105-228 147-262 (300)
26 PRK11036 putative S-adenosyl-L 99.6 7.7E-15 1.7E-19 137.2 11.5 103 121-227 43-147 (255)
27 COG2230 Cfa Cyclopropane fatty 99.6 1.6E-14 3.4E-19 133.6 13.0 117 109-229 59-176 (283)
28 TIGR00138 gidB 16S rRNA methyl 99.6 2.2E-14 4.8E-19 126.7 12.8 99 121-228 41-141 (181)
29 PF05175 MTS: Methyltransferas 99.6 6.2E-14 1.3E-18 122.8 14.9 114 107-226 20-137 (170)
30 KOG1540 Ubiquinone biosynthesi 99.6 4.4E-14 9.6E-19 126.1 13.2 114 110-226 88-211 (296)
31 PRK15068 tRNA mo(5)U34 methylt 99.6 4.1E-14 8.9E-19 136.2 13.9 108 117-228 117-225 (322)
32 PF13659 Methyltransf_26: Meth 99.6 3.1E-14 6.7E-19 116.6 10.7 105 123-227 1-113 (117)
33 TIGR00452 methyltransferase, p 99.5 6.1E-14 1.3E-18 133.6 13.6 112 114-229 113-225 (314)
34 COG4123 Predicted O-methyltran 99.5 3.9E-14 8.6E-19 128.7 11.0 108 118-226 40-167 (248)
35 PTZ00098 phosphoethanolamine N 99.5 6.1E-14 1.3E-18 131.4 12.4 111 115-229 45-156 (263)
36 PF13649 Methyltransf_25: Meth 99.5 3.8E-14 8.3E-19 113.0 8.9 95 126-223 1-101 (101)
37 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.4E-14 1.4E-18 130.3 11.7 107 120-229 54-164 (247)
38 TIGR00406 prmA ribosomal prote 99.5 2.1E-13 4.6E-18 129.5 14.4 112 107-228 146-258 (288)
39 PF05401 NodS: Nodulation prot 99.5 8.4E-14 1.8E-18 121.2 10.5 122 118-256 39-161 (201)
40 PRK10258 biotin biosynthesis p 99.5 8.9E-14 1.9E-18 129.7 11.5 107 112-228 32-139 (251)
41 TIGR02469 CbiT precorrin-6Y C5 99.5 3.7E-13 8.1E-18 111.0 14.0 104 118-228 15-121 (124)
42 PRK11873 arsM arsenite S-adeno 99.5 2E-13 4.3E-18 128.9 13.3 106 119-228 74-182 (272)
43 PRK12335 tellurite resistance 99.5 1.7E-13 3.7E-18 130.3 12.8 101 121-226 119-220 (287)
44 PRK05134 bifunctional 3-demeth 99.5 1.2E-13 2.5E-18 127.4 10.6 146 69-228 3-150 (233)
45 PRK14103 trans-aconitate 2-met 99.5 1.9E-13 4.1E-18 127.8 11.7 102 115-228 22-125 (255)
46 smart00828 PKS_MT Methyltransf 99.5 1.6E-13 3.6E-18 125.6 10.6 101 124-228 1-103 (224)
47 PLN02336 phosphoethanolamine N 99.5 4.3E-13 9.3E-18 136.6 13.8 106 118-228 262-368 (475)
48 PRK15001 SAM-dependent 23S rib 99.5 8E-13 1.7E-17 128.8 14.5 106 121-227 227-338 (378)
49 PRK13944 protein-L-isoaspartat 99.5 8.8E-13 1.9E-17 119.1 13.8 106 113-227 63-171 (205)
50 PRK01683 trans-aconitate 2-met 99.5 4.4E-13 9.5E-18 125.6 12.2 106 113-228 22-129 (258)
51 TIGR00740 methyltransferase, p 99.5 5.5E-13 1.2E-17 123.4 12.6 106 121-229 52-161 (239)
52 TIGR03533 L3_gln_methyl protei 99.5 8.3E-13 1.8E-17 125.0 13.7 106 121-228 120-250 (284)
53 PRK00121 trmB tRNA (guanine-N( 99.5 5.9E-13 1.3E-17 119.9 11.6 106 122-228 40-155 (202)
54 PRK00517 prmA ribosomal protei 99.4 8.2E-13 1.8E-17 123.0 12.8 106 107-228 106-212 (250)
55 PRK14967 putative methyltransf 99.4 1.6E-12 3.5E-17 119.0 13.8 105 119-227 33-157 (223)
56 PRK08317 hypothetical protein; 99.4 1.7E-12 3.7E-17 119.6 13.9 116 109-229 6-124 (241)
57 PRK00377 cbiT cobalt-precorrin 99.4 1.7E-12 3.7E-17 116.6 13.4 106 116-227 34-143 (198)
58 PRK08287 cobalt-precorrin-6Y C 99.4 2.6E-12 5.7E-17 114.4 14.3 101 118-227 27-129 (187)
59 PRK11805 N5-glutamine S-adenos 99.4 1.3E-12 2.8E-17 124.9 13.0 104 123-228 134-262 (307)
60 PRK00216 ubiE ubiquinone/menaq 99.4 1.7E-12 3.7E-17 119.8 13.3 107 118-227 47-156 (239)
61 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.2E-12 2.5E-17 125.9 12.5 100 121-227 112-213 (340)
62 TIGR00537 hemK_rel_arch HemK-r 99.4 1.4E-12 3.1E-17 115.2 12.1 103 120-227 17-138 (179)
63 PRK06922 hypothetical protein; 99.4 1.4E-12 3E-17 132.8 13.5 108 119-228 415-536 (677)
64 PF13489 Methyltransf_23: Meth 99.4 5.5E-13 1.2E-17 115.2 9.2 94 120-228 20-114 (161)
65 TIGR00080 pimt protein-L-isoas 99.4 1.7E-12 3.6E-17 118.2 12.5 104 114-227 69-175 (215)
66 PRK13942 protein-L-isoaspartat 99.4 2.1E-12 4.6E-17 117.1 12.5 104 114-227 68-174 (212)
67 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.7E-12 5.8E-17 117.2 13.2 112 110-227 27-141 (223)
68 COG2242 CobL Precorrin-6B meth 99.4 3.7E-12 8E-17 110.1 13.1 108 114-229 26-135 (187)
69 TIGR01177 conserved hypothetic 99.4 2.3E-12 4.9E-17 124.9 13.1 115 110-227 170-292 (329)
70 PF08242 Methyltransf_12: Meth 99.4 5.8E-14 1.2E-18 111.5 1.5 95 127-225 1-99 (99)
71 TIGR01983 UbiG ubiquinone bios 99.4 4.3E-12 9.2E-17 116.2 14.1 137 85-228 10-148 (224)
72 PRK05785 hypothetical protein; 99.4 1.9E-12 4.1E-17 118.5 11.5 90 122-223 51-141 (226)
73 TIGR00536 hemK_fam HemK family 99.4 3.7E-12 7.9E-17 120.9 13.8 126 101-228 92-243 (284)
74 PRK15128 23S rRNA m(5)C1962 me 99.4 2.4E-12 5.3E-17 126.8 12.8 110 121-231 219-341 (396)
75 PRK14966 unknown domain/N5-glu 99.4 2.9E-12 6.2E-17 125.1 12.8 129 94-227 225-379 (423)
76 KOG4300 Predicted methyltransf 99.4 1.7E-12 3.6E-17 112.5 9.7 100 124-227 78-180 (252)
77 TIGR02021 BchM-ChlM magnesium 99.4 6.5E-12 1.4E-16 114.7 13.7 103 120-227 53-156 (219)
78 PRK01544 bifunctional N5-gluta 99.4 3.5E-12 7.6E-17 129.9 13.0 133 94-228 86-268 (506)
79 KOG1271 Methyltransferases [Ge 99.4 2.2E-12 4.8E-17 109.5 9.6 106 125-230 70-182 (227)
80 PF08003 Methyltransf_9: Prote 99.4 3.6E-12 7.8E-17 118.1 11.8 108 118-229 111-219 (315)
81 TIGR00091 tRNA (guanine-N(7)-) 99.4 4.2E-12 9.1E-17 113.7 11.6 106 122-228 16-131 (194)
82 PRK11705 cyclopropane fatty ac 99.4 5.8E-12 1.3E-16 124.0 12.9 109 112-228 157-266 (383)
83 PRK07402 precorrin-6B methylas 99.4 1.3E-11 2.8E-16 110.7 14.0 107 114-228 32-141 (196)
84 TIGR02072 BioC biotin biosynth 99.4 4.8E-12 1E-16 116.7 11.6 100 121-228 33-134 (240)
85 PRK09489 rsmC 16S ribosomal RN 99.4 8.8E-12 1.9E-16 120.7 13.5 102 122-227 196-301 (342)
86 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.2E-11 2.6E-16 112.0 13.4 102 121-227 33-150 (213)
87 PLN03075 nicotianamine synthas 99.4 1.4E-11 3E-16 115.5 14.1 107 121-229 122-233 (296)
88 PRK10909 rsmD 16S rRNA m(2)G96 99.3 1.2E-11 2.6E-16 110.5 12.8 104 121-229 52-159 (199)
89 smart00138 MeTrc Methyltransfe 99.3 8E-12 1.7E-16 117.1 11.6 109 120-229 97-242 (264)
90 PRK09328 N5-glutamine S-adenos 99.3 1.6E-11 3.5E-16 116.0 13.8 125 100-227 86-236 (275)
91 PRK11783 rlmL 23S rRNA m(2)G24 99.3 5.9E-12 1.3E-16 133.3 11.8 108 121-229 537-656 (702)
92 COG2890 HemK Methylase of poly 99.3 1.4E-11 3.1E-16 116.0 13.1 128 96-228 85-237 (280)
93 TIGR03534 RF_mod_PrmC protein- 99.3 2.2E-11 4.9E-16 113.4 14.1 118 106-227 72-215 (251)
94 PRK14968 putative methyltransf 99.3 2.3E-11 5E-16 108.1 13.4 105 121-227 22-146 (188)
95 PRK04266 fibrillarin; Provisio 99.3 2.3E-11 5E-16 111.0 13.4 101 118-227 68-174 (226)
96 TIGR03587 Pse_Me-ase pseudamin 99.3 1.2E-11 2.6E-16 111.4 11.4 97 120-226 41-139 (204)
97 COG2813 RsmC 16S RNA G1207 met 99.3 1.5E-11 3.3E-16 114.1 12.4 112 112-226 148-263 (300)
98 PRK00312 pcm protein-L-isoaspa 99.3 2.7E-11 5.9E-16 110.0 13.4 103 114-227 70-173 (212)
99 TIGR02716 C20_methyl_CrtF C-20 99.3 3.2E-11 6.9E-16 115.9 14.3 116 111-229 138-254 (306)
100 PLN02336 phosphoethanolamine N 99.3 1.7E-11 3.6E-16 125.0 12.9 107 118-229 33-142 (475)
101 COG2263 Predicted RNA methylas 99.3 3.4E-11 7.4E-16 103.7 12.4 77 117-198 40-117 (198)
102 PHA03412 putative methyltransf 99.3 3.6E-11 7.8E-16 108.6 12.9 101 122-229 49-163 (241)
103 TIGR03704 PrmC_rel_meth putati 99.3 4.8E-11 1E-15 111.0 13.8 120 104-228 67-215 (251)
104 PRK13255 thiopurine S-methyltr 99.3 4.7E-11 1E-15 108.5 13.2 102 120-226 35-152 (218)
105 PLN02781 Probable caffeoyl-CoA 99.3 2.3E-11 5E-16 111.9 11.3 105 120-230 66-179 (234)
106 COG2518 Pcm Protein-L-isoaspar 99.3 3.1E-11 6.6E-16 106.7 11.0 101 115-226 65-166 (209)
107 TIGR00446 nop2p NOL1/NOP2/sun 99.3 4.9E-11 1.1E-15 111.9 13.0 113 118-231 67-201 (264)
108 COG2519 GCD14 tRNA(1-methylade 99.3 4.6E-11 9.9E-16 107.8 12.0 105 114-227 86-193 (256)
109 COG4106 Tam Trans-aconitate me 99.3 7.5E-12 1.6E-16 109.3 6.7 112 106-228 15-128 (257)
110 PRK14121 tRNA (guanine-N(7)-)- 99.3 6.9E-11 1.5E-15 114.8 13.6 107 121-228 121-234 (390)
111 PRK10901 16S rRNA methyltransf 99.3 6.5E-11 1.4E-15 118.7 13.8 113 118-232 240-375 (427)
112 PRK11088 rrmA 23S rRNA methylt 99.3 3.9E-11 8.5E-16 113.2 11.3 91 121-227 84-179 (272)
113 PRK04457 spermidine synthase; 99.3 4.4E-11 9.5E-16 111.9 11.4 108 121-228 65-176 (262)
114 KOG2361 Predicted methyltransf 99.2 7.9E-12 1.7E-16 111.1 5.9 143 85-233 36-187 (264)
115 PRK14901 16S rRNA methyltransf 99.2 7E-11 1.5E-15 118.7 13.3 114 118-232 248-387 (434)
116 PF10672 Methyltrans_SAM: S-ad 99.2 5E-11 1.1E-15 111.7 11.3 127 98-230 105-239 (286)
117 KOG2904 Predicted methyltransf 99.2 7.1E-11 1.5E-15 106.7 11.7 129 99-228 122-284 (328)
118 PRK07580 Mg-protoporphyrin IX 99.2 1.1E-10 2.3E-15 107.3 13.4 102 120-226 61-163 (230)
119 TIGR00095 RNA methyltransferas 99.2 9.3E-11 2E-15 104.3 12.4 105 121-229 48-159 (189)
120 TIGR00563 rsmB ribosomal RNA s 99.2 7.4E-11 1.6E-15 118.3 13.1 115 118-232 234-371 (426)
121 PRK11188 rrmJ 23S rRNA methylt 99.2 6.2E-11 1.3E-15 107.2 11.2 98 119-227 48-163 (209)
122 PHA03411 putative methyltransf 99.2 7.8E-11 1.7E-15 108.8 12.0 98 122-226 64-180 (279)
123 COG1092 Predicted SAM-dependen 99.2 5E-11 1.1E-15 116.0 11.1 129 96-231 197-338 (393)
124 PRK06202 hypothetical protein; 99.2 5.8E-11 1.3E-15 109.4 10.8 101 120-226 58-164 (232)
125 smart00650 rADc Ribosomal RNA 99.2 8.5E-11 1.8E-15 102.9 11.3 106 115-228 6-112 (169)
126 PRK14903 16S rRNA methyltransf 99.2 9.8E-11 2.1E-15 117.2 13.1 113 118-231 233-368 (431)
127 PRK14904 16S rRNA methyltransf 99.2 1.4E-10 3E-15 116.9 13.9 113 118-232 246-380 (445)
128 PLN02672 methionine S-methyltr 99.2 1.3E-10 2.7E-15 125.7 14.2 136 94-230 89-279 (1082)
129 PF01135 PCMT: Protein-L-isoas 99.2 5.3E-11 1.2E-15 107.1 9.6 103 114-226 64-169 (209)
130 PRK13943 protein-L-isoaspartat 99.2 1.8E-10 3.9E-15 110.3 13.6 101 117-227 75-178 (322)
131 PRK14902 16S rRNA methyltransf 99.2 1.3E-10 2.8E-15 117.2 13.3 113 118-232 246-382 (444)
132 PLN02585 magnesium protoporphy 99.2 1.4E-10 3.1E-15 110.8 12.4 100 121-226 143-247 (315)
133 TIGR03438 probable methyltrans 99.2 1.1E-10 2.4E-15 111.7 11.7 107 121-228 62-176 (301)
134 cd02440 AdoMet_MTases S-adenos 99.2 1.6E-10 3.5E-15 90.9 10.8 101 125-228 1-103 (107)
135 PRK00811 spermidine synthase; 99.2 1.7E-10 3.6E-15 109.3 12.1 110 121-230 75-192 (283)
136 PF03602 Cons_hypoth95: Conser 99.2 6.8E-11 1.5E-15 104.3 8.8 105 121-229 41-153 (183)
137 PRK03522 rumB 23S rRNA methylu 99.2 3E-10 6.4E-15 109.4 13.0 99 121-227 172-272 (315)
138 PRK13168 rumA 23S rRNA m(5)U19 99.2 4E-10 8.6E-15 113.6 14.1 113 107-228 282-399 (443)
139 COG4122 Predicted O-methyltran 99.2 2.5E-10 5.5E-15 102.4 11.1 115 107-230 47-167 (219)
140 PTZ00146 fibrillarin; Provisio 99.2 4.9E-10 1.1E-14 104.7 13.0 102 118-227 128-235 (293)
141 PF10294 Methyltransf_16: Puta 99.1 2.8E-10 6E-15 99.9 10.7 106 118-226 41-153 (173)
142 PLN02476 O-methyltransferase 99.1 3.7E-10 7.9E-15 105.4 11.9 105 120-230 116-229 (278)
143 PF01596 Methyltransf_3: O-met 99.1 2.9E-10 6.3E-15 102.0 10.7 104 121-230 44-156 (205)
144 PF08704 GCD14: tRNA methyltra 99.1 4.5E-10 9.7E-15 103.2 11.8 106 113-226 31-143 (247)
145 TIGR00438 rrmJ cell division p 99.1 3.2E-10 7E-15 101.0 10.6 99 117-227 27-144 (188)
146 COG0742 N6-adenine-specific me 99.1 1.2E-09 2.5E-14 95.1 12.6 118 109-230 28-155 (187)
147 PF03291 Pox_MCEL: mRNA cappin 99.1 8.7E-10 1.9E-14 106.0 13.0 105 122-226 62-183 (331)
148 COG1041 Predicted DNA modifica 99.1 6.4E-10 1.4E-14 105.3 11.8 117 109-228 184-309 (347)
149 PF02475 Met_10: Met-10+ like- 99.1 7E-10 1.5E-14 98.9 10.5 99 120-226 99-199 (200)
150 COG4976 Predicted methyltransf 99.1 3E-11 6.5E-16 106.4 1.3 102 118-229 121-225 (287)
151 PLN02366 spermidine synthase 99.1 1.1E-09 2.4E-14 104.3 12.1 114 121-234 90-211 (308)
152 TIGR00479 rumA 23S rRNA (uraci 99.1 1.4E-09 3E-14 109.4 13.2 113 107-227 277-394 (431)
153 TIGR02081 metW methionine bios 99.1 5.8E-10 1.3E-14 99.8 9.3 93 121-224 12-107 (194)
154 COG2521 Predicted archaeal met 99.1 1.3E-10 2.9E-15 102.6 5.0 120 107-226 117-242 (287)
155 TIGR02085 meth_trns_rumB 23S r 99.1 1.3E-09 2.8E-14 107.3 12.5 100 121-228 232-333 (374)
156 PRK13256 thiopurine S-methyltr 99.0 2.3E-09 5E-14 97.2 12.2 105 120-226 41-160 (226)
157 PF07021 MetW: Methionine bios 99.0 7.5E-10 1.6E-14 96.4 8.3 97 120-227 11-110 (193)
158 PF01170 UPF0020: Putative RNA 99.0 3.7E-09 8.1E-14 93.2 12.8 117 109-226 15-148 (179)
159 KOG3010 Methyltransferase [Gen 99.0 2.2E-10 4.7E-15 102.1 4.8 98 124-226 35-134 (261)
160 PRK01581 speE spermidine synth 99.0 2.5E-09 5.5E-14 102.6 11.8 108 121-228 149-267 (374)
161 KOG2899 Predicted methyltransf 99.0 1.5E-09 3.3E-14 96.6 9.3 108 118-227 54-207 (288)
162 TIGR00417 speE spermidine synt 99.0 4.7E-09 1E-13 98.9 13.4 108 122-229 72-186 (270)
163 KOG1975 mRNA cap methyltransfe 99.0 1.8E-09 4E-14 99.8 9.9 109 118-226 113-234 (389)
164 PLN02589 caffeoyl-CoA O-methyl 99.0 3.4E-09 7.4E-14 97.7 11.1 105 120-230 77-191 (247)
165 PRK03612 spermidine synthase; 99.0 1.8E-09 3.8E-14 110.8 10.0 110 121-230 296-416 (521)
166 KOG1541 Predicted protein carb 99.0 3E-09 6.5E-14 93.4 9.7 100 122-228 50-159 (270)
167 PRK11727 23S rRNA mA1618 methy 99.0 5.4E-09 1.2E-13 99.8 12.3 77 122-198 114-198 (321)
168 PF02527 GidB: rRNA small subu 99.0 1.2E-08 2.7E-13 89.8 13.0 96 125-229 51-148 (184)
169 PF05724 TPMT: Thiopurine S-me 99.0 3.1E-09 6.8E-14 96.4 9.3 107 118-226 33-152 (218)
170 PTZ00338 dimethyladenosine tra 98.9 7.6E-09 1.6E-13 98.1 11.8 88 111-202 25-113 (294)
171 COG2520 Predicted methyltransf 98.9 5.2E-09 1.1E-13 99.9 10.3 101 120-227 186-287 (341)
172 PRK04338 N(2),N(2)-dimethylgua 98.9 6.8E-09 1.5E-13 102.0 10.6 98 123-228 58-157 (382)
173 PF02390 Methyltransf_4: Putat 98.9 1.6E-08 3.4E-13 90.3 11.1 104 124-228 19-132 (195)
174 PRK14896 ksgA 16S ribosomal RN 98.9 1.2E-08 2.6E-13 95.5 10.5 83 110-198 17-100 (258)
175 KOG1501 Arginine N-methyltrans 98.9 5.9E-09 1.3E-13 99.8 8.4 224 145-392 389-631 (636)
176 PRK00274 ksgA 16S ribosomal RN 98.9 9E-09 2E-13 97.0 9.5 81 113-198 33-114 (272)
177 PRK04148 hypothetical protein; 98.8 3.2E-08 6.9E-13 81.8 10.9 103 110-227 4-109 (134)
178 TIGR02143 trmA_only tRNA (urac 98.8 2.8E-08 6.1E-13 97.0 11.8 94 124-227 199-309 (353)
179 TIGR00478 tly hemolysin TlyA f 98.8 1.7E-08 3.7E-13 91.9 9.4 99 109-226 62-168 (228)
180 PRK05031 tRNA (uracil-5-)-meth 98.8 3.1E-08 6.7E-13 97.1 11.7 110 107-227 192-318 (362)
181 KOG3191 Predicted N6-DNA-methy 98.8 4.8E-08 1E-12 83.4 10.2 101 122-226 43-165 (209)
182 PF05891 Methyltransf_PK: AdoM 98.8 2E-08 4.3E-13 89.3 8.0 104 122-227 55-159 (218)
183 KOG3420 Predicted RNA methylas 98.8 2E-08 4.3E-13 82.4 7.2 85 112-198 38-123 (185)
184 PLN02232 ubiquinone biosynthes 98.8 2.1E-08 4.6E-13 86.8 7.3 77 149-228 1-80 (160)
185 COG3897 Predicted methyltransf 98.7 3.6E-08 7.8E-13 85.3 8.4 107 109-224 66-173 (218)
186 PF00891 Methyltransf_2: O-met 98.7 1.5E-07 3.4E-12 87.1 13.2 106 112-228 90-198 (241)
187 PLN02823 spermine synthase 98.7 6.3E-08 1.4E-12 93.3 10.9 107 122-228 103-219 (336)
188 COG2265 TrmA SAM-dependent met 98.7 7.2E-08 1.6E-12 95.9 11.4 116 104-227 275-394 (432)
189 COG0357 GidB Predicted S-adeno 98.7 4.1E-08 8.8E-13 88.0 8.3 95 123-226 68-165 (215)
190 COG0421 SpeE Spermidine syntha 98.7 1.4E-07 3E-12 88.5 11.3 113 124-236 78-197 (282)
191 COG0116 Predicted N6-adenine-s 98.7 2.5E-07 5.4E-12 89.1 12.8 122 107-229 176-344 (381)
192 TIGR00308 TRM1 tRNA(guanine-26 98.7 1.3E-07 2.9E-12 92.5 10.9 98 123-228 45-146 (374)
193 COG0220 Predicted S-adenosylme 98.7 2.1E-07 4.6E-12 84.6 11.4 104 124-228 50-163 (227)
194 PF05219 DREV: DREV methyltran 98.7 1.2E-07 2.5E-12 86.4 9.5 94 122-229 94-188 (265)
195 PRK11933 yebU rRNA (cytosine-C 98.7 2.4E-07 5.1E-12 93.2 12.6 113 119-232 110-245 (470)
196 PF09445 Methyltransf_15: RNA 98.7 7.5E-08 1.6E-12 82.6 7.5 74 124-198 1-78 (163)
197 TIGR00755 ksgA dimethyladenosi 98.7 1.4E-07 2.9E-12 88.2 9.9 81 112-198 19-103 (253)
198 KOG0820 Ribosomal RNA adenine 98.7 1.4E-07 3.1E-12 85.6 9.5 86 109-197 45-131 (315)
199 COG0030 KsgA Dimethyladenosine 98.6 1.5E-07 3.3E-12 86.6 9.8 87 111-202 19-107 (259)
200 PF12147 Methyltransf_20: Puta 98.6 6.1E-07 1.3E-11 82.8 13.4 109 120-228 133-248 (311)
201 PF06080 DUF938: Protein of un 98.6 2.4E-07 5.2E-12 82.0 10.0 102 125-227 28-139 (204)
202 PF05958 tRNA_U5-meth_tr: tRNA 98.6 2.5E-07 5.5E-12 90.3 10.7 93 107-202 182-291 (352)
203 PRK11783 rlmL 23S rRNA m(2)G24 98.6 4.7E-07 1E-11 96.3 12.7 118 107-225 174-343 (702)
204 PF01739 CheR: CheR methyltran 98.6 2.1E-07 4.5E-12 83.0 8.5 107 122-229 31-175 (196)
205 PF01564 Spermine_synth: Sperm 98.6 5.4E-07 1.2E-11 83.5 10.8 108 121-228 75-190 (246)
206 COG3963 Phospholipid N-methylt 98.5 7.7E-07 1.7E-11 75.1 10.2 110 111-227 37-154 (194)
207 KOG2940 Predicted methyltransf 98.5 6.1E-08 1.3E-12 85.6 3.6 99 123-227 73-172 (325)
208 PRK10611 chemotaxis methyltran 98.5 4.2E-07 9E-12 85.6 8.8 106 123-229 116-262 (287)
209 PF05148 Methyltransf_8: Hypot 98.5 2.2E-07 4.7E-12 81.9 6.1 98 107-228 60-157 (219)
210 PRK00536 speE spermidine synth 98.5 7.4E-07 1.6E-11 82.7 9.7 102 121-234 71-176 (262)
211 KOG2915 tRNA(1-methyladenosine 98.5 1.5E-06 3.1E-11 79.1 11.3 105 114-226 97-207 (314)
212 KOG1661 Protein-L-isoaspartate 98.5 1.7E-06 3.7E-11 75.8 11.0 99 119-226 79-190 (237)
213 KOG1663 O-methyltransferase [S 98.5 1.7E-06 3.7E-11 77.1 11.1 109 120-234 71-188 (237)
214 PF08123 DOT1: Histone methyla 98.4 2E-06 4.3E-11 77.2 10.7 106 117-226 37-155 (205)
215 PF07942 N2227: N2227-like pro 98.4 3.4E-06 7.3E-11 78.4 12.2 102 121-226 55-199 (270)
216 PRK01544 bifunctional N5-gluta 98.4 2.5E-06 5.4E-11 87.2 11.3 107 121-228 346-461 (506)
217 PRK11760 putative 23S rRNA C24 98.4 2.7E-06 5.8E-11 80.9 10.2 88 120-222 209-296 (357)
218 COG0144 Sun tRNA and rRNA cyto 98.3 7.8E-06 1.7E-10 79.9 13.1 115 118-233 152-292 (355)
219 COG1189 Predicted rRNA methyla 98.3 3E-06 6.6E-11 76.1 9.2 107 109-227 66-176 (245)
220 PF01728 FtsJ: FtsJ-like methy 98.3 1.1E-06 2.4E-11 77.7 6.1 106 110-226 9-136 (181)
221 KOG3045 Predicted RNA methylas 98.3 1.6E-06 3.5E-11 78.2 7.0 96 108-229 169-264 (325)
222 COG0293 FtsJ 23S rRNA methylas 98.3 5.3E-06 1.1E-10 73.5 10.0 102 114-226 37-156 (205)
223 KOG2730 Methylase [General fun 98.3 9.6E-07 2.1E-11 77.8 4.8 99 122-224 94-197 (263)
224 PF04816 DUF633: Family of unk 98.2 7.8E-06 1.7E-10 73.4 10.3 96 126-226 1-98 (205)
225 PF02384 N6_Mtase: N-6 DNA Met 98.2 6.5E-06 1.4E-10 79.2 10.4 113 114-226 38-180 (311)
226 PRK00050 16S rRNA m(4)C1402 me 98.2 3.8E-06 8.2E-11 79.4 8.4 77 118-197 15-98 (296)
227 PF03141 Methyltransf_29: Puta 98.2 8.6E-07 1.9E-11 87.6 4.1 119 106-233 97-223 (506)
228 COG1352 CheR Methylase of chem 98.2 6.6E-06 1.4E-10 76.6 9.6 106 122-228 96-240 (268)
229 PF00398 RrnaAD: Ribosomal RNA 98.2 8.7E-06 1.9E-10 76.3 10.2 85 110-198 18-106 (262)
230 KOG2187 tRNA uracil-5-methyltr 98.2 2.1E-06 4.5E-11 84.8 5.8 78 104-183 365-443 (534)
231 PF13679 Methyltransf_32: Meth 98.1 3.4E-05 7.5E-10 65.2 11.5 75 120-195 23-105 (141)
232 KOG1269 SAM-dependent methyltr 98.1 4.9E-06 1.1E-10 80.9 6.7 108 118-228 106-214 (364)
233 PRK10742 putative methyltransf 98.1 2E-05 4.4E-10 71.9 10.2 85 114-199 78-174 (250)
234 COG4262 Predicted spermidine s 98.1 1.9E-05 4.1E-10 74.7 10.0 116 121-236 288-414 (508)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 2.2E-05 4.7E-10 74.4 10.1 114 118-232 81-222 (283)
236 PF05971 Methyltransf_10: Prot 98.0 3.2E-05 7E-10 72.8 10.4 78 123-200 103-188 (299)
237 PF01269 Fibrillarin: Fibrilla 98.0 0.00012 2.6E-09 65.5 12.4 102 118-227 69-176 (229)
238 KOG1709 Guanidinoacetate methy 98.0 6E-05 1.3E-09 66.4 9.8 102 121-227 100-204 (271)
239 TIGR01444 fkbM_fam methyltrans 98.0 2.4E-05 5.2E-10 66.1 7.2 58 125-183 1-60 (143)
240 PF13578 Methyltransf_24: Meth 98.0 6.2E-06 1.3E-10 66.0 3.4 99 127-229 1-105 (106)
241 COG0500 SmtA SAM-dependent met 97.9 0.00016 3.4E-09 60.7 11.4 98 126-229 52-155 (257)
242 TIGR02987 met_A_Alw26 type II 97.9 5E-05 1.1E-09 78.4 9.8 76 122-198 31-121 (524)
243 PF03059 NAS: Nicotianamine sy 97.9 0.00011 2.4E-09 68.5 10.6 105 122-228 120-229 (276)
244 PF09243 Rsm22: Mitochondrial 97.8 0.00022 4.8E-09 67.3 12.1 110 110-221 21-133 (274)
245 PHA01634 hypothetical protein 97.8 0.00012 2.7E-09 59.0 7.6 72 121-196 27-99 (156)
246 PF06962 rRNA_methylase: Putat 97.8 0.00013 2.8E-09 60.8 8.1 80 147-227 1-90 (140)
247 KOG3201 Uncharacterized conser 97.7 2.2E-05 4.7E-10 66.1 3.1 113 111-226 18-137 (201)
248 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 0.00012 2.5E-09 67.8 8.2 109 119-227 53-197 (256)
249 COG2384 Predicted SAM-dependen 97.7 0.00057 1.2E-08 60.9 12.1 95 121-220 15-111 (226)
250 KOG4058 Uncharacterized conser 97.7 0.0002 4.4E-09 59.3 8.1 101 119-227 69-170 (199)
251 KOG2352 Predicted spermine/spe 97.7 0.00019 4.2E-09 70.9 9.4 104 121-226 46-158 (482)
252 TIGR03439 methyl_EasF probable 97.7 0.00089 1.9E-08 64.2 13.7 106 120-227 74-195 (319)
253 KOG3178 Hydroxyindole-O-methyl 97.6 0.0003 6.4E-09 67.0 9.5 95 123-227 178-273 (342)
254 KOG1331 Predicted methyltransf 97.6 3.8E-05 8.3E-10 70.8 3.3 96 121-226 44-140 (293)
255 KOG4589 Cell division protein 97.6 0.0007 1.5E-08 58.5 10.1 98 118-226 65-181 (232)
256 KOG1122 tRNA and rRNA cytosine 97.5 0.00062 1.3E-08 66.0 10.2 114 118-233 237-375 (460)
257 COG1889 NOP1 Fibrillarin-like 97.5 0.001 2.2E-08 58.3 10.4 102 118-227 72-178 (231)
258 PF11968 DUF3321: Putative met 97.4 0.0005 1.1E-08 61.3 7.8 84 124-224 53-139 (219)
259 KOG3987 Uncharacterized conser 97.4 3.7E-05 8E-10 67.3 0.4 106 109-228 97-206 (288)
260 PF01861 DUF43: Protein of unk 97.4 0.005 1.1E-07 56.0 13.6 103 114-223 36-142 (243)
261 KOG2798 Putative trehalase [Ca 97.3 0.0023 4.9E-08 59.9 10.9 100 123-226 151-293 (369)
262 PF02005 TRM: N2,N2-dimethylgu 97.3 0.0013 2.8E-08 64.7 9.5 99 122-227 49-152 (377)
263 PF04672 Methyltransf_19: S-ad 97.2 0.0027 5.8E-08 58.9 9.7 105 124-230 70-191 (267)
264 PF04445 SAM_MT: Putative SAM- 97.2 0.0014 3.1E-08 59.6 7.8 81 118-199 69-161 (234)
265 TIGR00006 S-adenosyl-methyltra 97.1 0.0038 8.3E-08 59.3 10.2 78 118-197 16-100 (305)
266 PF07091 FmrO: Ribosomal RNA m 97.1 0.005 1.1E-07 56.3 10.0 84 107-195 92-177 (251)
267 KOG1227 Putative methyltransfe 97.0 0.00038 8.2E-09 64.5 2.2 94 122-223 194-289 (351)
268 KOG2671 Putative RNA methylase 97.0 0.0012 2.6E-08 62.4 5.2 82 118-201 204-295 (421)
269 PF04989 CmcI: Cephalosporin h 96.9 0.0061 1.3E-07 54.3 9.1 119 101-229 15-147 (206)
270 COG5459 Predicted rRNA methyla 96.8 0.0034 7.3E-08 59.5 7.0 113 112-227 103-223 (484)
271 PF03141 Methyltransf_29: Puta 96.8 0.0017 3.7E-08 64.7 5.1 99 124-229 367-467 (506)
272 KOG1099 SAM-dependent methyltr 96.6 0.0036 7.7E-08 56.0 5.3 92 124-226 43-160 (294)
273 KOG2793 Putative N2,N2-dimethy 96.6 0.013 2.7E-07 53.9 8.9 101 122-225 86-195 (248)
274 KOG2920 Predicted methyltransf 96.5 0.0018 4E-08 60.0 3.1 107 119-228 113-233 (282)
275 cd00315 Cyt_C5_DNA_methylase C 96.5 0.004 8.7E-08 58.8 5.5 67 125-198 2-71 (275)
276 KOG3115 Methyltransferase-like 96.5 0.0081 1.8E-07 52.8 6.5 103 123-226 61-180 (249)
277 COG1867 TRM1 N2,N2-dimethylgua 96.4 0.017 3.7E-07 55.5 8.6 97 123-227 53-152 (380)
278 KOG1562 Spermidine synthase [A 96.3 0.015 3.3E-07 54.1 7.7 109 121-229 120-236 (337)
279 KOG0024 Sorbitol dehydrogenase 96.3 0.018 3.9E-07 54.4 8.1 96 118-227 165-271 (354)
280 COG0286 HsdM Type I restrictio 96.2 0.038 8.2E-07 56.5 10.9 113 112-224 176-321 (489)
281 COG1064 AdhP Zn-dependent alco 96.2 0.021 4.5E-07 55.0 8.4 92 118-227 162-257 (339)
282 COG4798 Predicted methyltransf 96.1 0.012 2.7E-07 51.3 5.7 110 118-229 44-166 (238)
283 COG1063 Tdh Threonine dehydrog 96.1 0.012 2.6E-07 57.7 6.2 94 120-226 166-266 (350)
284 PF11599 AviRa: RRNA methyltra 96.1 0.099 2.2E-06 46.6 11.1 119 107-226 37-211 (246)
285 KOG2198 tRNA cytosine-5-methyl 96.0 0.045 9.7E-07 52.7 9.3 127 118-247 151-312 (375)
286 KOG1253 tRNA methyltransferase 95.9 0.0034 7.5E-08 62.2 1.7 101 121-228 108-215 (525)
287 PRK09424 pntA NAD(P) transhydr 95.9 0.038 8.2E-07 56.5 8.9 96 120-227 162-283 (509)
288 COG3129 Predicted SAM-dependen 95.8 0.038 8.2E-07 49.7 7.6 76 122-198 78-162 (292)
289 PF00145 DNA_methylase: C-5 cy 95.7 0.042 9.2E-07 52.9 8.3 65 125-198 2-70 (335)
290 PRK09880 L-idonate 5-dehydroge 95.7 0.042 9.1E-07 53.5 8.2 96 119-227 166-264 (343)
291 KOG1596 Fibrillarin and relate 95.5 0.051 1.1E-06 49.1 7.3 104 117-228 151-260 (317)
292 cd08283 FDH_like_1 Glutathione 95.1 0.038 8.3E-07 54.8 6.0 106 118-227 180-304 (386)
293 PRK11524 putative methyltransf 95.1 0.065 1.4E-06 50.8 7.2 46 120-166 206-252 (284)
294 PF01555 N6_N4_Mtase: DNA meth 94.9 0.056 1.2E-06 48.9 6.0 42 120-162 189-231 (231)
295 COG0275 Predicted S-adenosylme 94.8 0.26 5.5E-06 46.4 9.9 79 117-197 18-104 (314)
296 PF01795 Methyltransf_5: MraW 94.8 0.072 1.6E-06 50.7 6.5 78 118-197 16-101 (310)
297 PRK13699 putative methylase; P 94.6 0.13 2.9E-06 47.0 7.5 47 120-167 161-208 (227)
298 KOG2078 tRNA modification enzy 94.5 0.021 4.5E-07 55.7 2.1 64 119-183 246-311 (495)
299 PF03492 Methyltransf_7: SAM d 94.5 0.56 1.2E-05 45.5 12.0 108 120-227 14-181 (334)
300 PF07757 AdoMet_MTase: Predict 94.2 0.078 1.7E-06 41.9 4.3 33 122-155 58-90 (112)
301 COG1568 Predicted methyltransf 94.2 0.25 5.5E-06 45.7 8.2 96 120-222 150-250 (354)
302 TIGR00027 mthyl_TIGR00027 meth 94.1 0.79 1.7E-05 42.9 11.7 124 104-229 64-197 (260)
303 KOG3924 Putative protein methy 94.1 0.23 4.9E-06 48.3 8.0 109 115-227 185-306 (419)
304 cd00401 AdoHcyase S-adenosyl-L 94.0 0.34 7.3E-06 48.3 9.4 86 120-227 199-287 (413)
305 PLN02668 indole-3-acetate carb 93.9 0.39 8.4E-06 47.3 9.6 105 123-227 64-235 (386)
306 COG2933 Predicted SAM-dependen 93.8 0.2 4.3E-06 46.0 6.7 89 119-222 208-296 (358)
307 PF02636 Methyltransf_28: Puta 93.6 0.33 7.3E-06 45.1 8.3 71 123-198 19-104 (252)
308 TIGR00561 pntA NAD(P) transhyd 93.4 0.16 3.5E-06 51.8 6.3 94 121-226 162-281 (511)
309 PF05711 TylF: Macrocin-O-meth 93.4 0.87 1.9E-05 42.1 10.4 124 104-232 56-215 (248)
310 TIGR00675 dcm DNA-methyltransf 93.3 0.13 2.7E-06 49.7 5.1 66 126-198 1-68 (315)
311 PF07279 DUF1442: Protein of u 93.2 1.5 3.2E-05 39.4 11.1 87 107-196 29-122 (218)
312 cd08237 ribitol-5-phosphate_DH 93.2 0.41 8.9E-06 46.5 8.5 90 120-227 161-254 (341)
313 KOG2651 rRNA adenine N-6-methy 93.2 0.29 6.3E-06 47.3 7.0 54 110-163 141-195 (476)
314 cd08281 liver_ADH_like1 Zinc-d 92.9 0.46 1E-05 46.7 8.5 97 118-227 187-288 (371)
315 TIGR03451 mycoS_dep_FDH mycoth 92.9 0.58 1.3E-05 45.7 9.2 97 118-227 172-274 (358)
316 PRK11524 putative methyltransf 92.4 0.2 4.3E-06 47.5 4.9 54 173-227 9-78 (284)
317 TIGR01202 bchC 2-desacetyl-2-h 92.4 0.35 7.5E-06 46.3 6.7 84 121-227 143-229 (308)
318 COG0686 Ald Alanine dehydrogen 92.4 0.48 1E-05 44.8 7.1 96 123-226 168-265 (371)
319 KOG2912 Predicted DNA methylas 92.3 0.37 8.1E-06 45.5 6.4 73 126-198 106-187 (419)
320 TIGR03366 HpnZ_proposed putati 92.2 0.32 6.9E-06 45.8 6.1 94 120-227 118-216 (280)
321 PF03269 DUF268: Caenorhabditi 92.1 0.3 6.5E-06 41.6 5.0 95 123-227 2-109 (177)
322 COG1255 Uncharacterized protei 92.0 1.5 3.2E-05 35.1 8.4 87 123-227 14-102 (129)
323 COG0270 Dcm Site-specific DNA 91.9 0.28 6E-06 47.6 5.3 69 124-198 4-76 (328)
324 cd05188 MDR Medium chain reduc 91.9 0.52 1.1E-05 43.4 7.0 95 118-226 130-229 (271)
325 PRK13699 putative methylase; P 91.6 0.25 5.3E-06 45.2 4.4 53 173-226 2-69 (227)
326 PRK10458 DNA cytosine methylas 91.5 0.93 2E-05 46.0 8.8 72 123-197 88-177 (467)
327 PRK01747 mnmC bifunctional tRN 91.5 0.58 1.3E-05 50.0 7.8 105 122-226 57-203 (662)
328 cd08232 idonate-5-DH L-idonate 91.3 1.2 2.5E-05 43.0 9.1 89 122-226 165-259 (339)
329 PRK10309 galactitol-1-phosphat 91.2 1 2.2E-05 43.7 8.7 98 118-227 156-258 (347)
330 cd08239 THR_DH_like L-threonin 91.1 0.44 9.4E-06 46.1 5.9 97 118-227 159-260 (339)
331 cd08230 glucose_DH Glucose deh 91.1 0.79 1.7E-05 44.7 7.7 92 120-227 170-267 (355)
332 PLN02740 Alcohol dehydrogenase 91.0 1.5 3.3E-05 43.3 9.7 45 118-162 194-241 (381)
333 PF04072 LCM: Leucine carboxyl 91.0 0.94 2E-05 39.9 7.3 110 105-215 60-182 (183)
334 KOG0821 Predicted ribosomal RN 90.9 0.73 1.6E-05 41.3 6.4 83 96-184 28-111 (326)
335 cd08254 hydroxyacyl_CoA_DH 6-h 90.8 1.3 2.8E-05 42.5 8.9 96 118-227 161-261 (338)
336 PF02737 3HCDH_N: 3-hydroxyacy 90.8 1.4 3.1E-05 38.7 8.3 97 125-231 1-116 (180)
337 PF10237 N6-adenineMlase: Prob 90.6 4 8.7E-05 35.2 10.6 105 108-228 13-122 (162)
338 KOG1098 Putative SAM-dependent 90.3 0.51 1.1E-05 48.4 5.5 98 118-226 40-155 (780)
339 PLN02827 Alcohol dehydrogenase 90.2 1.5 3.3E-05 43.3 8.8 97 118-227 189-293 (378)
340 COG1565 Uncharacterized conser 90.0 1.2 2.7E-05 43.0 7.6 49 119-167 74-132 (370)
341 COG4627 Uncharacterized protei 89.6 0.061 1.3E-06 45.4 -1.3 55 173-228 31-85 (185)
342 PF00107 ADH_zinc_N: Zinc-bind 89.4 0.76 1.7E-05 37.5 5.2 80 132-228 1-88 (130)
343 COG4301 Uncharacterized conser 89.3 9.2 0.0002 35.2 12.1 106 120-227 76-191 (321)
344 COG1062 AdhC Zn-dependent alco 88.7 1.1 2.4E-05 43.0 6.1 47 117-163 180-229 (366)
345 KOG1201 Hydroxysteroid 17-beta 88.6 2.9 6.3E-05 39.4 8.8 73 120-196 35-121 (300)
346 KOG0022 Alcohol dehydrogenase, 88.6 0.99 2.1E-05 42.8 5.6 46 118-163 188-236 (375)
347 PF10354 DUF2431: Domain of un 88.4 2.2 4.9E-05 36.9 7.6 100 128-227 2-123 (166)
348 PF05206 TRM13: Methyltransfer 88.2 1.9 4.2E-05 40.2 7.4 75 110-185 6-87 (259)
349 PF03686 UPF0146: Uncharacteri 88.0 1.8 3.9E-05 35.4 6.2 63 122-196 13-77 (127)
350 PRK05476 S-adenosyl-L-homocyst 87.9 3.1 6.7E-05 41.7 9.1 84 121-227 210-297 (425)
351 cd08293 PTGR2 Prostaglandin re 87.6 2.4 5.3E-05 40.9 8.2 96 119-227 149-252 (345)
352 PF02254 TrkA_N: TrkA-N domain 87.5 3.7 8.1E-05 32.7 7.9 82 131-226 4-93 (116)
353 COG0604 Qor NADPH:quinone redu 87.1 3.2 6.9E-05 40.2 8.5 96 117-227 137-239 (326)
354 PRK07066 3-hydroxybutyryl-CoA 86.7 4.2 9.1E-05 39.3 9.1 96 124-228 8-118 (321)
355 cd08285 NADP_ADH NADP(H)-depen 86.7 1.1 2.3E-05 43.6 5.1 96 118-226 162-263 (351)
356 PRK05808 3-hydroxybutyryl-CoA 86.6 7.2 0.00016 36.7 10.6 96 125-230 5-119 (282)
357 PLN02494 adenosylhomocysteinas 86.2 2.6 5.7E-05 42.6 7.5 85 121-227 252-339 (477)
358 PF06859 Bin3: Bicoid-interact 86.2 0.53 1.1E-05 37.5 2.1 39 189-227 1-42 (110)
359 TIGR00936 ahcY adenosylhomocys 85.7 5.5 0.00012 39.7 9.5 85 120-227 192-280 (406)
360 PRK07819 3-hydroxybutyryl-CoA 85.6 9 0.00019 36.3 10.6 96 124-229 6-121 (286)
361 TIGR02819 fdhA_non_GSH formald 85.5 1.2 2.7E-05 44.2 4.9 102 118-227 181-297 (393)
362 PRK06035 3-hydroxyacyl-CoA deh 85.5 5.6 0.00012 37.7 9.2 93 124-226 4-118 (291)
363 TIGR02356 adenyl_thiF thiazole 85.5 2 4.3E-05 38.5 5.8 33 122-154 20-54 (202)
364 TIGR03201 dearomat_had 6-hydro 85.4 3.9 8.5E-05 39.7 8.4 44 118-162 162-208 (349)
365 cd08278 benzyl_alcohol_DH Benz 85.3 1.3 2.7E-05 43.5 4.8 93 118-226 182-282 (365)
366 PLN03154 putative allyl alcoho 85.1 5.1 0.00011 39.0 9.0 95 118-226 154-255 (348)
367 PRK05786 fabG 3-ketoacyl-(acyl 84.9 12 0.00027 33.6 11.0 72 122-197 4-89 (238)
368 TIGR02822 adh_fam_2 zinc-bindi 84.7 7.1 0.00015 37.6 9.7 89 118-227 161-252 (329)
369 PRK08293 3-hydroxybutyryl-CoA 84.6 6.4 0.00014 37.2 9.2 94 124-226 4-117 (287)
370 cd05278 FDH_like Formaldehyde 84.5 2 4.3E-05 41.5 5.8 95 119-226 164-264 (347)
371 PLN02586 probable cinnamyl alc 84.5 4 8.7E-05 39.9 8.0 90 120-226 181-275 (360)
372 cd08233 butanediol_DH_like (2R 84.4 4.7 0.0001 39.1 8.4 97 118-227 168-270 (351)
373 TIGR00518 alaDH alanine dehydr 84.3 1.6 3.5E-05 43.0 5.1 96 122-226 166-264 (370)
374 PRK05854 short chain dehydroge 84.2 6 0.00013 37.9 8.9 76 121-197 12-101 (313)
375 cd08295 double_bond_reductase_ 84.1 6.2 0.00014 38.0 9.1 96 117-226 146-248 (338)
376 cd05285 sorbitol_DH Sorbitol d 84.1 4.3 9.3E-05 39.2 8.0 97 117-226 157-262 (343)
377 KOG2352 Predicted spermine/spe 83.9 0.98 2.1E-05 45.3 3.3 106 121-227 294-414 (482)
378 TIGR02825 B4_12hDH leukotriene 83.8 7.5 0.00016 37.2 9.5 95 117-226 133-234 (325)
379 PRK07530 3-hydroxybutyryl-CoA 83.7 11 0.00024 35.7 10.4 97 124-230 5-120 (292)
380 cd01065 NAD_bind_Shikimate_DH 83.3 8.2 0.00018 32.4 8.5 81 110-197 6-89 (155)
381 PRK15001 SAM-dependent 23S rib 83.3 11 0.00025 37.2 10.4 90 125-226 47-139 (378)
382 PRK12475 thiamine/molybdopteri 83.3 3.3 7.2E-05 40.3 6.7 75 122-196 23-123 (338)
383 cd08231 MDR_TM0436_like Hypoth 83.1 12 0.00027 36.2 10.8 94 120-226 175-277 (361)
384 PRK09260 3-hydroxybutyryl-CoA 83.1 5.8 0.00013 37.5 8.2 95 124-227 2-115 (288)
385 cd08294 leukotriene_B4_DH_like 83.0 6.5 0.00014 37.5 8.6 96 117-227 138-239 (329)
386 PRK07417 arogenate dehydrogena 82.8 6.5 0.00014 37.0 8.4 83 125-225 2-87 (279)
387 COG3510 CmcI Cephalosporin hyd 82.6 9.1 0.0002 33.8 8.2 115 102-229 53-180 (237)
388 PRK11730 fadB multifunctional 82.6 7.2 0.00016 42.1 9.5 98 124-231 314-430 (715)
389 cd08234 threonine_DH_like L-th 82.1 9 0.00019 36.6 9.3 93 118-226 155-254 (334)
390 TIGR02437 FadB fatty oxidation 82.1 7.3 0.00016 42.0 9.3 98 124-231 314-430 (714)
391 TIGR02441 fa_ox_alpha_mit fatt 82.0 5.8 0.00013 42.9 8.5 98 124-231 336-452 (737)
392 cd08265 Zn_ADH3 Alcohol dehydr 81.7 3 6.6E-05 41.1 5.9 96 118-226 199-304 (384)
393 PF05050 Methyltransf_21: Meth 81.7 3.3 7.2E-05 35.0 5.5 53 128-180 1-61 (167)
394 cd05279 Zn_ADH1 Liver alcohol 81.6 3.4 7.3E-05 40.5 6.2 96 117-227 178-283 (365)
395 PRK11154 fadJ multifunctional 81.6 9 0.00019 41.3 9.8 98 124-231 310-427 (708)
396 PRK05708 2-dehydropantoate 2-r 81.5 6.4 0.00014 37.7 7.9 93 124-227 3-102 (305)
397 PRK07502 cyclohexadienyl dehyd 81.4 7.9 0.00017 37.0 8.5 87 124-226 7-97 (307)
398 PRK06701 short chain dehydroge 81.3 16 0.00034 34.5 10.5 74 121-197 44-132 (290)
399 PF06460 NSP13: Coronavirus NS 81.3 13 0.00028 34.5 9.0 105 109-226 47-166 (299)
400 TIGR02354 thiF_fam2 thiamine b 81.3 16 0.00034 32.7 9.8 33 122-154 20-54 (200)
401 TIGR00853 pts-lac PTS system, 81.1 7.9 0.00017 30.1 6.8 54 124-196 4-57 (95)
402 TIGR02818 adh_III_F_hyde S-(hy 80.7 4.4 9.6E-05 39.7 6.7 96 118-226 181-284 (368)
403 COG3315 O-Methyltransferase in 80.5 15 0.00034 34.9 10.0 122 105-228 76-208 (297)
404 PRK06130 3-hydroxybutyryl-CoA 80.3 12 0.00025 35.8 9.3 94 124-226 5-112 (311)
405 PRK07904 short chain dehydroge 80.2 10 0.00023 34.9 8.7 75 121-196 6-94 (253)
406 cd08255 2-desacetyl-2-hydroxye 80.1 7.6 0.00016 36.0 7.8 92 118-226 93-187 (277)
407 cd08236 sugar_DH NAD(P)-depend 79.8 3.8 8.2E-05 39.5 5.8 97 118-227 155-256 (343)
408 PRK08644 thiamine biosynthesis 79.3 12 0.00026 33.8 8.4 74 122-195 27-123 (212)
409 COG1748 LYS9 Saccharopine dehy 79.1 6.4 0.00014 38.9 7.0 69 124-197 2-76 (389)
410 cd08240 6_hydroxyhexanoate_dh_ 79.1 4.3 9.4E-05 39.3 6.0 91 120-226 173-271 (350)
411 PRK07063 short chain dehydroge 79.0 10 0.00023 34.8 8.3 76 121-197 5-94 (260)
412 cd08263 Zn_ADH10 Alcohol dehyd 79.0 4 8.8E-05 39.9 5.8 92 119-226 184-284 (367)
413 PLN02545 3-hydroxybutyryl-CoA 78.4 25 0.00054 33.3 10.8 96 124-229 5-119 (295)
414 PRK08324 short chain dehydroge 78.3 14 0.00031 39.6 10.0 73 121-197 420-506 (681)
415 PF03721 UDPG_MGDP_dh_N: UDP-g 78.1 14 0.0003 32.5 8.3 99 125-228 2-119 (185)
416 PRK08306 dipicolinate synthase 77.7 16 0.00034 34.8 9.2 87 120-226 149-238 (296)
417 cd08242 MDR_like Medium chain 77.0 18 0.0004 34.3 9.6 89 118-226 151-242 (319)
418 cd00757 ThiF_MoeB_HesA_family 76.9 13 0.00029 33.8 8.1 75 122-196 20-118 (228)
419 PF02558 ApbA: Ketopantoate re 76.6 5.9 0.00013 33.2 5.4 86 126-226 1-98 (151)
420 PRK08762 molybdopterin biosynt 76.4 11 0.00024 37.2 8.0 74 122-195 134-231 (376)
421 cd08286 FDH_like_ADH2 formalde 76.4 6.2 0.00013 38.1 6.1 96 118-226 162-263 (345)
422 cd08279 Zn_ADH_class_III Class 76.2 5.7 0.00012 38.8 5.9 93 118-226 178-279 (363)
423 PRK06128 oxidoreductase; Provi 75.8 34 0.00074 32.3 11.0 74 121-197 53-142 (300)
424 PF00106 adh_short: short chai 75.7 12 0.00026 31.6 7.1 72 124-197 1-88 (167)
425 COG0863 DNA modification methy 75.6 11 0.00024 35.6 7.5 48 119-167 219-267 (302)
426 PRK06914 short chain dehydroge 75.3 15 0.00032 34.2 8.2 74 123-197 3-89 (280)
427 cd08299 alcohol_DH_class_I_II_ 74.9 25 0.00054 34.5 10.1 45 118-162 186-233 (373)
428 PRK05225 ketol-acid reductoiso 74.9 4.9 0.00011 40.4 4.9 91 120-230 33-132 (487)
429 PRK10083 putative oxidoreducta 74.9 14 0.0003 35.4 8.2 97 118-227 156-257 (339)
430 COG1893 ApbA Ketopantoate redu 74.9 9.5 0.00021 36.6 6.8 89 124-227 1-99 (307)
431 PRK12548 shikimate 5-dehydroge 74.8 20 0.00042 34.0 9.0 85 109-196 112-206 (289)
432 PF11899 DUF3419: Protein of u 74.8 9 0.0002 37.9 6.8 44 118-162 31-75 (380)
433 cd05281 TDH Threonine dehydrog 74.5 7.5 0.00016 37.4 6.2 93 120-226 161-259 (341)
434 KOG1205 Predicted dehydrogenas 74.5 14 0.00031 34.8 7.7 76 121-197 10-99 (282)
435 PRK09590 celB cellobiose phosp 74.5 17 0.00038 28.7 7.1 71 125-223 3-75 (104)
436 cd05564 PTS_IIB_chitobiose_lic 74.4 10 0.00022 29.5 5.7 50 129-196 4-53 (96)
437 PLN02178 cinnamyl-alcohol dehy 74.4 15 0.00032 36.3 8.3 89 121-226 177-270 (375)
438 PRK06197 short chain dehydroge 74.2 19 0.00041 34.1 8.8 76 121-197 14-103 (306)
439 PRK06522 2-dehydropantoate 2-r 74.2 20 0.00044 33.8 9.0 91 125-227 2-98 (304)
440 PLN03209 translocon at the inn 74.1 12 0.00026 39.0 7.7 78 117-196 74-166 (576)
441 cd08296 CAD_like Cinnamyl alco 74.1 16 0.00035 35.0 8.4 94 119-226 160-256 (333)
442 TIGR00497 hsdM type I restrict 73.9 22 0.00048 36.6 9.7 77 122-198 217-302 (501)
443 PRK08339 short chain dehydroge 73.8 17 0.00037 33.6 8.2 75 121-197 6-93 (263)
444 PRK07688 thiamine/molybdopteri 73.8 9.2 0.0002 37.2 6.5 33 122-154 23-57 (339)
445 cd01487 E1_ThiF_like E1_ThiF_l 73.7 11 0.00024 32.7 6.5 31 125-155 1-33 (174)
446 PTZ00075 Adenosylhomocysteinas 73.7 12 0.00026 38.0 7.5 85 120-227 251-339 (476)
447 PRK05867 short chain dehydroge 73.6 16 0.00035 33.4 8.0 74 121-197 7-94 (253)
448 cd08261 Zn_ADH7 Alcohol dehydr 73.4 5.3 0.00011 38.4 4.8 95 118-226 155-255 (337)
449 PRK06249 2-dehydropantoate 2-r 73.4 9 0.0002 36.7 6.4 93 123-227 5-104 (313)
450 cd05284 arabinose_DH_like D-ar 73.3 8.5 0.00018 36.9 6.2 92 119-226 164-263 (340)
451 PRK07677 short chain dehydroge 73.0 18 0.00038 33.1 8.0 72 123-197 1-86 (252)
452 PRK15116 sulfur acceptor prote 73.0 14 0.0003 34.7 7.2 34 121-154 28-63 (268)
453 PRK07806 short chain dehydroge 72.8 57 0.0012 29.4 11.4 103 121-226 4-131 (248)
454 PLN02514 cinnamyl-alcohol dehy 72.6 20 0.00043 34.9 8.7 93 120-227 178-273 (357)
455 PRK06172 short chain dehydroge 72.5 19 0.00042 32.8 8.2 74 121-197 5-92 (253)
456 PRK07062 short chain dehydroge 72.3 19 0.00041 33.1 8.2 76 121-197 6-95 (265)
457 TIGR02440 FadJ fatty oxidation 72.3 22 0.00048 38.3 9.5 98 124-231 305-422 (699)
458 COG0569 TrkA K+ transport syst 72.2 13 0.00027 34.0 6.7 64 125-196 2-73 (225)
459 PF02153 PDH: Prephenate dehyd 71.7 12 0.00027 34.7 6.7 74 136-226 1-76 (258)
460 TIGR02279 PaaC-3OHAcCoADH 3-hy 71.5 26 0.00057 36.1 9.5 97 122-228 4-119 (503)
461 PRK09291 short chain dehydroge 71.4 19 0.00042 32.7 8.0 71 123-196 2-80 (257)
462 PRK06124 gluconate 5-dehydroge 71.4 21 0.00045 32.6 8.2 74 121-197 9-96 (256)
463 PF01488 Shikimate_DH: Shikima 71.3 7.7 0.00017 32.2 4.7 71 120-196 9-82 (135)
464 PRK07890 short chain dehydroge 71.2 24 0.00052 32.2 8.5 74 121-197 3-90 (258)
465 COG5379 BtaA S-adenosylmethion 71.1 9.3 0.0002 36.0 5.4 45 120-165 61-106 (414)
466 cd08300 alcohol_DH_class_III c 71.0 12 0.00025 36.7 6.7 96 118-226 182-285 (368)
467 cd05565 PTS_IIB_lactose PTS_II 70.9 12 0.00027 29.3 5.4 71 126-224 3-73 (99)
468 PRK08303 short chain dehydroge 70.7 20 0.00044 34.1 8.1 74 121-197 6-103 (305)
469 cd08301 alcohol_DH_plants Plan 70.6 11 0.00024 36.8 6.4 97 118-227 183-287 (369)
470 COG0287 TyrA Prephenate dehydr 70.6 18 0.0004 34.1 7.5 88 124-226 4-95 (279)
471 cd08245 CAD Cinnamyl alcohol d 70.4 34 0.00073 32.5 9.7 93 118-227 158-254 (330)
472 PF01210 NAD_Gly3P_dh_N: NAD-d 70.1 13 0.00029 31.5 6.1 93 125-228 1-102 (157)
473 KOG2539 Mitochondrial/chloropl 70.0 7.2 0.00016 39.1 4.8 108 119-226 197-312 (491)
474 cd08277 liver_alcohol_DH_like 69.9 12 0.00026 36.6 6.5 97 118-227 180-284 (365)
475 PRK08945 putative oxoacyl-(acy 69.8 20 0.00044 32.5 7.7 76 120-197 9-100 (247)
476 cd01492 Aos1_SUMO Ubiquitin ac 69.8 15 0.00033 32.7 6.5 75 122-196 20-117 (197)
477 PF02826 2-Hacid_dh_C: D-isome 69.7 5 0.00011 35.0 3.4 90 119-226 32-124 (178)
478 cd01483 E1_enzyme_family Super 69.5 16 0.00035 30.3 6.4 30 125-154 1-32 (143)
479 KOG1209 1-Acyl dihydroxyaceton 69.3 21 0.00046 32.2 7.1 68 121-197 5-89 (289)
480 PRK08268 3-hydroxy-acyl-CoA de 69.2 28 0.0006 36.0 9.1 94 123-226 7-119 (507)
481 PRK08340 glucose-1-dehydrogena 69.2 21 0.00045 32.8 7.7 69 125-197 2-84 (259)
482 PRK12937 short chain dehydroge 69.1 58 0.0013 29.2 10.6 74 121-197 3-91 (245)
483 PRK12921 2-dehydropantoate 2-r 69.0 14 0.0003 35.0 6.6 89 125-226 2-99 (305)
484 PRK07035 short chain dehydroge 69.0 26 0.00056 31.9 8.2 74 121-197 6-93 (252)
485 PF03446 NAD_binding_2: NAD bi 68.9 20 0.00043 30.7 6.9 84 125-226 3-91 (163)
486 TIGR02355 moeB molybdopterin s 68.6 25 0.00054 32.4 7.9 34 122-155 23-58 (240)
487 cd08287 FDH_like_ADH3 formalde 68.6 12 0.00026 36.0 6.1 96 118-226 164-265 (345)
488 KOG2811 Uncharacterized conser 68.6 18 0.00038 35.3 6.8 61 123-185 183-248 (420)
489 cd01488 Uba3_RUB Ubiquitin act 68.6 18 0.00039 34.4 7.0 72 125-196 1-95 (291)
490 PRK00258 aroE shikimate 5-dehy 68.6 38 0.00083 31.8 9.4 81 109-196 108-192 (278)
491 PRK10669 putative cation:proto 68.5 26 0.00056 36.6 8.9 61 124-195 418-487 (558)
492 PRK05876 short chain dehydroge 68.4 26 0.00055 32.7 8.2 74 121-197 4-91 (275)
493 cd00755 YgdL_like Family of ac 68.4 39 0.00085 30.9 9.0 34 122-155 10-45 (231)
494 PRK09242 tropinone reductase; 68.3 27 0.00059 31.9 8.3 76 121-197 7-96 (257)
495 TIGR00692 tdh L-threonine 3-de 68.2 9.1 0.0002 36.9 5.2 95 120-227 159-259 (340)
496 PF02086 MethyltransfD12: D12 68.1 7.8 0.00017 35.8 4.5 44 122-166 20-64 (260)
497 PF07991 IlvN: Acetohydroxy ac 67.5 16 0.00035 31.4 5.8 89 122-229 3-95 (165)
498 PF01262 AlaDh_PNT_C: Alanine 67.4 1.8 3.9E-05 37.4 0.1 41 121-162 18-61 (168)
499 PRK00094 gpsA NAD(P)H-dependen 67.2 29 0.00064 33.1 8.5 93 125-228 3-104 (325)
500 PRK08223 hypothetical protein; 67.2 18 0.00039 34.3 6.6 34 122-155 26-61 (287)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-64 Score=469.45 Aligned_cols=326 Identities=64% Similarity=1.070 Sum_probs=316.0
Q ss_pred CCccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHH
Q 015306 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 159 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~ 159 (409)
....++.||+.|.++++|.+||+|.+|+.+|+.++..+.++..+++|||||||+|++++++|++|+++|+|||.|.+++.
T Consensus 18 d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~ 97 (346)
T KOG1499|consen 18 DMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADF 97 (346)
T ss_pred ccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999997799
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccc
Q 015306 160 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239 (409)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~ 239 (409)
|++.+..|++.+.|+++++.++++.+|.+++|+|+|+||||+++.+.+++.++.+..++|+|||.++|..+++|++++..
T Consensus 98 a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d 177 (346)
T KOG1499|consen 98 ARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIED 177 (346)
T ss_pred HHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceEeEEE
Q 015306 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALV 319 (409)
Q Consensus 240 ~~~~~~~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 319 (409)
+.+....+.||.++|||||+++.+.+..+|+++.+.+.+++++|+.+.++|+.+...+++.++.+|++.+.+++.+|||+
T Consensus 178 ~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~v 257 (346)
T KOG1499|consen 178 DSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAFV 257 (346)
T ss_pred chhhhhhcCccccccccchhhhhhhhhcccceeccChhHhcccceeeEEeeeeeeeccceeeccceEEEEccCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCC--ceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcce-
Q 015306 320 AYFDVTFTKCH--KLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR- 396 (409)
Q Consensus 320 ~wf~~~l~~~~--~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~- 396 (409)
.|||+.|..++ ..+.+| |+|.++.|||+|+||+|++|+.|++|+.|.+++.+++++.++|++++.++|+++++
T Consensus 258 ~yFDv~F~~~~~~~~~~fS----T~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~ 333 (346)
T KOG1499|consen 258 AYFDVEFTGCHGKKRLGFS----TSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLNFKGQG 333 (346)
T ss_pred EEEEEeeccCCCCCcceee----cCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEecCCcc
Confidence 99999999866 789999 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceEEeeeC
Q 015306 397 HSAISRIQYYKMR 409 (409)
Q Consensus 397 ~~~~~~~~~~~~~ 409 (409)
..+++.++.|+|+
T Consensus 334 ~~~~~~~~~y~~~ 346 (346)
T KOG1499|consen 334 LCSFSESDSYPMR 346 (346)
T ss_pred ccccccccccccC
Confidence 7779999999986
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=6.5e-45 Score=331.48 Aligned_cols=310 Identities=39% Similarity=0.646 Sum_probs=276.3
Q ss_pred CCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHH
Q 015306 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN 158 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~ 158 (409)
....+...||..|+.....++|+.|..|+..|.++|..+.....++.|||+|||+|+++++++++|+++|++||.|+|++
T Consensus 134 tEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAq 213 (517)
T KOG1500|consen 134 TEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQ 213 (517)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHH
Confidence 33445567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEcc
Q 015306 159 MAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (409)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (409)
.|++.+..|.+.++|+++.+.++++.+| +++|+|++++|++.+.+|.+++..+.+. ++|||.|.++|....+.++|+.
T Consensus 214 yA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFs 291 (517)
T KOG1500|consen 214 YARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFS 291 (517)
T ss_pred HHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccc
Confidence 9999999999999999999999999999 9999999999999999999999999988 9999999999999999999999
Q ss_pred ccccchh---hhcccc--ccccccchhhhhhh----ccCCeEEeeCCCcccCcccceeEeeCCCCCCCCC-ceeeeeEEE
Q 015306 239 DAEYKDD---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-SFTAPFKLV 308 (409)
Q Consensus 239 ~~~~~~~---~~~~w~--~~~g~d~~~~~~~~----~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~~~~ 308 (409)
+..+..+ +.+||- .+||.|++++.... +.+|.++.+++..++..+ ....+||....++++ ....+++|.
T Consensus 292 DE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEedlh~i~iPlkF~ 370 (517)
T KOG1500|consen 292 DEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEEDLHEIDIPLKFH 370 (517)
T ss_pred hHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccc-hHhhhhhhhcccchheeecccceeh
Confidence 8877653 567886 58999999886654 678999988776555544 456889999999887 467888999
Q ss_pred EeecceEeEEEEEEEEEEcCCCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEE
Q 015306 309 AQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIM 388 (409)
Q Consensus 309 ~~~~g~~~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~ 388 (409)
+...|.+||+++|||+.|++..-.+.+| |.|..|.|||.|....|..|+.|++|++|++++.+-.++.+..+.++.
T Consensus 371 ~~~~g~iHGLAfWFDV~F~GS~~~~wls----Tap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~~~QSY~i~i~ 446 (517)
T KOG1500|consen 371 ALQCGRIHGLAFWFDVLFDGSTVQVWLS----TAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIANSRQSYDITIT 446 (517)
T ss_pred hhhhcceeeeeeEEEEEeccceEEEccC----CCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEEEccccceeEEEE
Confidence 9999999999999999999866667889 999999999999999999999999999999999999999887555555
Q ss_pred EEEEEcc
Q 015306 389 LKYSLQG 395 (409)
Q Consensus 389 ~~~~~~~ 395 (409)
++.+-..
T Consensus 447 l~~~~~l 453 (517)
T KOG1500|consen 447 LSAKMTL 453 (517)
T ss_pred EEeeeee
Confidence 5555443
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=7.4e-42 Score=338.70 Aligned_cols=274 Identities=32% Similarity=0.486 Sum_probs=223.8
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCC----C----CCCEEEEEcCCCChHHHHHHHcC-----CCEEEEEecHH-HHHHHH
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFL----F----KDKVVLDVGAGTGILSLFCAKAG-----AAHVYAVECSQ-MANMAK 161 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~----~----~~~~VLDlGcG~G~l~~~la~~g-----~~~V~~vD~s~-~~~~a~ 161 (409)
.+..+.+|..++..|.+||.++... . .++.|||||||+|.|+..+++++ +.+|+|||.|+ ++..++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 3445678999999999998764321 1 36789999999999999998875 67999999999 888888
Q ss_pred HHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccc
Q 015306 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (409)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (409)
+.+..+++.++|+++++|++++..+ .++|+||||+||+++.+|.. +.++.++.++|||||++||+.+++|++|+.++.
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~-pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNELS-PECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSH-HHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEeccCCccccccC-HHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 8888999999999999999999988 79999999999999988854 567899999999999999999999999999998
Q ss_pred cchhhhccccccccccchhhhhhhccCCeEEeeCCCcccCcc-cceeEeeCCCCC---CCCCceeeeeEEEEeecceEeE
Q 015306 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC-QLLKTMDISKMG---PGDASFTAPFKLVAQRNDYIHA 317 (409)
Q Consensus 242 ~~~~~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p-~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~g~~~g 317 (409)
++.+...+|. ...+..|++..+.+...|+++ ..+++|++.+.. .++..+...++|.+.++|.+||
T Consensus 310 l~~~~~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhG 378 (448)
T PF05185_consen 310 LYQEVRNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHG 378 (448)
T ss_dssp HHHHHHHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEE
T ss_pred HHHHHHhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEE
Confidence 8776554333 445678998888888889988 899999988776 3566789999999999999999
Q ss_pred EEEEEEEEEcCCCceeEeecccccCCCC----CCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEE
Q 015306 318 LVAYFDVTFTKCHKLMGFSTVYNTGPKS----RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 393 (409)
Q Consensus 318 ~~~wf~~~l~~~~~~~~ls~~~~t~p~~----~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~ 393 (409)
|++||++.|++ ++.|| |+|.. +.+||+|++|||++|+.|++|++|+++++++.+.. .|+++|.+
T Consensus 379 fagwFd~~Ly~---~V~LS----t~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~~-----~vWYEW~v 446 (448)
T PF05185_consen 379 FAGWFDAVLYG---DVVLS----TSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDDR-----KVWYEWSV 446 (448)
T ss_dssp EEEEEEEEEEC---SEEEE----SSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCST-----CEEEEEEE
T ss_pred EEEEEEEEeeC---Ceeee----cCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCCC-----cEEEEEEE
Confidence 99999999996 69999 99987 78999999999999999999999999999887653 68888887
Q ss_pred c
Q 015306 394 Q 394 (409)
Q Consensus 394 ~ 394 (409)
+
T Consensus 447 ~ 447 (448)
T PF05185_consen 447 E 447 (448)
T ss_dssp E
T ss_pred e
Confidence 5
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.8e-28 Score=234.79 Aligned_cols=271 Identities=23% Similarity=0.314 Sum_probs=220.1
Q ss_pred hhcChHhHHHHHHHHHhccCCC-------CCCEEEEEcCCCChHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHH
Q 015306 100 MLKDVVRTKSYQNVIYQNKFLF-------KDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEA 166 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~~~~~~-------~~~~VLDlGcG~G~l~~~la~~-----g~~~V~~vD~s~-~~~~a~~~~~~ 166 (409)
+-+|......|.+||.+++... ...+|+-+|+|.|-+.....++ -..++++||.+| ++...+. ...
T Consensus 338 FEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~ 416 (649)
T KOG0822|consen 338 FEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNF 416 (649)
T ss_pred hhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hch
Confidence 4557777777877776543211 1347889999999886655442 133899999999 7777665 455
Q ss_pred cCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchhh
Q 015306 167 NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDK 246 (409)
Q Consensus 167 ~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~ 246 (409)
..|+++|+++.+|++.+..|.+++|++|++.+|++..+|-. +.+++.+.++|||+|+.||.+++.|+.|+.++.++++.
T Consensus 417 ~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELS-PECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v 495 (649)
T KOG0822|consen 417 ECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELS-PECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEV 495 (649)
T ss_pred hhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCC-HHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHH
Confidence 57889999999999999866689999999999998887654 57888899999999999999999999999999887764
Q ss_pred hccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCC-CCCCceeeeeEEEEeecceEeEEEEEEEEE
Q 015306 247 IEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMG-PGDASFTAPFKLVAQRNDYIHALVAYFDVT 325 (409)
Q Consensus 247 ~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~ 325 (409)
...- ..-.+..|++.++.+...|++|+.+++|...... .-+..+....+|.+..+|.+|||++||++.
T Consensus 496 ~a~~-----------~~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~ 564 (649)
T KOG0822|consen 496 KATN-----------DPNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAV 564 (649)
T ss_pred HhcC-----------CccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhhhh
Confidence 3210 0134678899999999999999999999877653 223356788899999999999999999999
Q ss_pred EcCCCceeEeecccccCCCCC---CCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcc
Q 015306 326 FTKCHKLMGFSTVYNTGPKSR---ATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 395 (409)
Q Consensus 326 l~~~~~~~~ls~~~~t~p~~~---~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 395 (409)
|+. +|.|| +.|.+. ..+|++++|||++|+.|.+|++|+++||+..+. ..||++|.++.
T Consensus 565 LYk---dI~LS----I~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~-----~kVWYEW~v~~ 625 (649)
T KOG0822|consen 565 LYK---DIFLS----IEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDS-----TKVWYEWSVES 625 (649)
T ss_pred hhh---eeeEe----eccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCC-----ceeEEEEEeee
Confidence 996 89999 888754 468999999999999999999999999988766 47999999884
No 5
>PTZ00357 methyltransferase; Provisional
Probab=99.88 E-value=3.6e-21 Score=190.56 Aligned_cols=285 Identities=18% Similarity=0.202 Sum_probs=198.9
Q ss_pred HhhcChHhHHHHHHHHHhccCC------------------------------C---CCCEEEEEcCCCChHHHHHHH---
Q 015306 99 EMLKDVVRTKSYQNVIYQNKFL------------------------------F---KDKVVLDVGAGTGILSLFCAK--- 142 (409)
Q Consensus 99 ~~l~d~~r~~~~~~~l~~~~~~------------------------------~---~~~~VLDlGcG~G~l~~~la~--- 142 (409)
.+-+|....+.|.++|.+.+.. . ....|+-+|+|.|-|...+.+
T Consensus 644 VFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak 723 (1072)
T PTZ00357 644 VFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVS 723 (1072)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHH
Confidence 3556778888888877665410 0 113689999999988555444
Q ss_pred -cC-CCEEEEEecHH-HHHHHHHHH-HHcCC-------CCcEEEEEcccccccCCC-----------CceeEEEEecccc
Q 015306 143 -AG-AAHVYAVECSQ-MANMAKQIV-EANGF-------SNVITVLKGKIEEIELPV-----------TKVDIIISEWMGY 200 (409)
Q Consensus 143 -~g-~~~V~~vD~s~-~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~-----------~~~DvVvs~~~~~ 200 (409)
.| ..+|++||.++ .+.....+. ....| .++|+++..|++.+..+. +++|+||||++|+
T Consensus 724 ~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGS 803 (1072)
T PTZ00357 724 ALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGS 803 (1072)
T ss_pred HcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhcc
Confidence 23 23899999996 554444433 33455 346999999999986431 3799999999999
Q ss_pred cccChhHHHHHHHHHHhcccC----Ce-------EEEccCCceEEEEccccccchhhhccccccccccch-----hhhhh
Q 015306 201 FLLFENMLNTVLYARDKWLVD----DG-------IVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS-----CIKKQ 264 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~Lkp----gG-------~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~d~~-----~~~~~ 264 (409)
+..+|-. +.+|+.+.+.||+ +| +.||+.++.|+.|+.++.++......- ..|+... .....
T Consensus 804 FGDNELS-PECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~--~~gltvP~p~c~~~haa 880 (1072)
T PTZ00357 804 LGDNELS-PECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAA--VKGLTVPPPGCHDHHAA 880 (1072)
T ss_pred cccccCC-HHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHhh--hcccccCCccccccchh
Confidence 9888755 4677777788875 55 589999999999999998876532210 1111000 00112
Q ss_pred hccCCeEEeeCCCcccCcccceeEeeCCCCCC-----------------CCCceeeeeEEEEeecceEeEEEEEEEEEEc
Q 015306 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP-----------------GDASFTAPFKLVAQRNDYIHALVAYFDVTFT 327 (409)
Q Consensus 265 ~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~ 327 (409)
.+..+++..+.....|+.|+++++|...+... .+..+.+.+.|.+..++++|||++||++.|+
T Consensus 881 ~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvLY 960 (1072)
T PTZ00357 881 LNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLY 960 (1072)
T ss_pred hcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEee
Confidence 24567887777777889999999998865442 1124678899999999999999999999999
Q ss_pred CCC--ceeEeecccccCCCCC---CCCceeEEEecC---CceecCCCC---------EEEEEEEEeeCCCCCceeEEEEE
Q 015306 328 KCH--KLMGFSTVYNTGPKSR---ATHWKQTVLYLE---DVLTICEGE---------AISGSLTVAPNKKNPRDVDIMLK 390 (409)
Q Consensus 328 ~~~--~~~~ls~~~~t~p~~~---~~~W~q~v~~l~---~p~~v~~g~---------~i~~~~~~~~~~~~~r~~~~~~~ 390 (409)
... ..+.|| |.|... .-+|++.+|||+ .+..++.|+ .|.+.+.++.+-... .|+++
T Consensus 961 kDVt~~~V~LS----I~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~---rVwYe 1033 (1072)
T PTZ00357 961 QSATAPATIIA----TAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQ---RVWYE 1033 (1072)
T ss_pred cCCCccceEee----cCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccc---eEEEE
Confidence 611 126799 999754 357999999999 667777887 677666655543443 35555
Q ss_pred EEE
Q 015306 391 YSL 393 (409)
Q Consensus 391 ~~~ 393 (409)
|.+
T Consensus 1034 w~v 1036 (1072)
T PTZ00357 1034 WSV 1036 (1072)
T ss_pred EEE
Confidence 544
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.87 E-value=6.1e-22 Score=187.01 Aligned_cols=258 Identities=22% Similarity=0.298 Sum_probs=192.6
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCCCC-----C-CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFLFK-----D-KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG 168 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~~~-----~-~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~ 168 (409)
-...|++|..|+.+|+..|.+.....+ | ..|||||+|||+++++++++|+..|+|+|.-. |.+.|++....||
T Consensus 34 sy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 34 SYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred hHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC
Confidence 344699999999999999987643222 2 26999999999999999999999999999999 9999999999999
Q ss_pred CCCcEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchhhh
Q 015306 169 FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKI 247 (409)
Q Consensus 169 ~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~ 247 (409)
++++|+++....+++... ..+.|+++.+.+..-+.+++.++.+-++..+++++|...+|.++++|++++++..++.-..
T Consensus 114 ~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~~nd 193 (636)
T KOG1501|consen 114 MSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCNLND 193 (636)
T ss_pred CccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhhhhc
Confidence 999999999999998754 3469999999888888889999999999999999999999999999999999876543110
Q ss_pred cc---ccccccccch--hhhhhhccCC------eEEee-CCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceE
Q 015306 248 EF---WNNVYGFDMS--CIKKQAMMEP------LVDTV-DQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYI 315 (409)
Q Consensus 248 ~~---w~~~~g~d~~--~~~~~~~~~p------~~~~~-~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (409)
.+ -....|..+. .+... ...+ +.+.. ...++|+++..+|.+||...........-.+.+.+...|++
T Consensus 194 l~~~~~~ts~gv~~~p~~lesc-~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~Sg~~ 272 (636)
T KOG1501|consen 194 LRNNEAKTSDGVRLVPPGLESC-FGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHSGPL 272 (636)
T ss_pred cccccccccCCcccCCCccccC-CCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccccch
Confidence 00 0011121110 00000 0000 11222 23478999999999999954433222222445567789999
Q ss_pred eEEEEEEEEEEcCCCceeEeecccccCCCCC---------CCCceeEEEecCC
Q 015306 316 HALVAYFDVTFTKCHKLMGFSTVYNTGPKSR---------ATHWKQTVLYLED 359 (409)
Q Consensus 316 ~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~~---------~~~W~q~v~~l~~ 359 (409)
..++.||+.+++. .+..-+. .+|... ..||.|+++++++
T Consensus 273 ~~~l~wwdi~mD~-~g~~f~~----m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 273 RSNLLWWDISMDQ-FGFSFLV----MQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred hheeeeeeeeecc-CcceEEE----ecceecCCChHHHHHHHHHHHhcCCChh
Confidence 9999999999995 3345566 777642 2589999999884
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.81 E-value=3e-20 Score=165.52 Aligned_cols=154 Identities=22% Similarity=0.272 Sum_probs=124.0
Q ss_pred ccCCCcccCCCCCCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCC
Q 015306 67 MCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146 (409)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~ 146 (409)
+.+++..++++|+.++ ..||+..+++...+.+ +..|..-+.+.+.. ....+|.+|||||||.|+++..+|+.|+
T Consensus 9 ~~~id~~e~~~F~~la--~~wwd~~g~f~~LH~~--N~~rl~~i~~~~~~-~~~l~g~~vLDvGCGgG~Lse~mAr~Ga- 82 (243)
T COG2227 9 TQNVDYKELDKFEALA--SRWWDPEGEFKPLHKI--NPLRLDYIREVARL-RFDLPGLRVLDVGCGGGILSEPLARLGA- 82 (243)
T ss_pred cccCCHHHHHHHHHHH--hhhcCCCCceeeeeee--ccchhhhhhhhhhc-ccCCCCCeEEEecCCccHhhHHHHHCCC-
Confidence 3457777888888888 8899988887755533 23333222222221 1126899999999999999999999995
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEE
Q 015306 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
.|+|+|+++ +++.|+.....+++. +.+.+..++++....++||+|+|. .++.|-++++.+++++.+++||||.+
T Consensus 83 ~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cm---EVlEHv~dp~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 83 SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCM---EVLEHVPDPESFLRACAKLVKPGGIL 157 (243)
T ss_pred eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEh---hHHHccCCHHHHHHHHHHHcCCCcEE
Confidence 999999999 999999999999875 889999999988766899999994 44777789999999999999999999
Q ss_pred EccCCc
Q 015306 226 LPDKAS 231 (409)
Q Consensus 226 ip~~~~ 231 (409)
+.++..
T Consensus 158 f~STin 163 (243)
T COG2227 158 FLSTIN 163 (243)
T ss_pred EEeccc
Confidence 987655
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=4.5e-19 Score=160.87 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=102.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
.|++.+.......+|.+|||||||||.+++.+++ .|..+|+|+|+|+ |++.|++.....++.+ ++|+++|+++++++
T Consensus 38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~ 116 (238)
T COG2226 38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCC
Confidence 5666666655556899999999999999999999 5778999999999 9999999999988877 99999999999999
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.+||+|.+ .+.+.+-.+++.+|+++.|+|||||+++
T Consensus 117 D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 117 DNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 999999997 5668888899999999999999999876
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=2.5e-18 Score=164.31 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=121.4
Q ss_pred cCCCcccCCCCCCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhcc-------CCCCCCEEEEEcCCCChHHHHH
Q 015306 68 CDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-------FLFKDKVVLDVGAGTGILSLFC 140 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~-------~~~~~~~VLDlGcG~G~l~~~l 140 (409)
..++..++.+|+.++ +.||+..+.+..++.| +..|...+.+.+.+.. ...++.+|||||||+|.++..+
T Consensus 74 ~s~~~~e~~~f~~~a--~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 74 TSLNEDELAKFSAIA--DTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHH
Confidence 367788888888888 5899998887765555 4444444444443221 1246779999999999999999
Q ss_pred HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcc
Q 015306 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 219 (409)
Q Consensus 141 a~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~L 219 (409)
++.|+ +|+|||+++ +++.|+++....+...++++++++++++++++++||+|++..+ +.|..++..++.++.++|
T Consensus 150 a~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v---LeHv~d~~~~L~~l~r~L 225 (322)
T PLN02396 150 ARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV---IEHVANPAEFCKSLSALT 225 (322)
T ss_pred HHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH---HHhcCCHHHHHHHHHHHc
Confidence 98865 899999999 9999998877666555799999999998877689999999544 555567889999999999
Q ss_pred cCCeEEEccC
Q 015306 220 VDDGIVLPDK 229 (409)
Q Consensus 220 kpgG~lip~~ 229 (409)
||||.++...
T Consensus 226 kPGG~liist 235 (322)
T PLN02396 226 IPNGATVLST 235 (322)
T ss_pred CCCcEEEEEE
Confidence 9999998653
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.74 E-value=2.4e-17 Score=133.96 Aligned_cols=106 Identities=28% Similarity=0.348 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCCCCceeEEEEec-
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEW- 197 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~DvVvs~~- 197 (409)
|+.+|||||||+|.+++.+++ .+..+|+|+|+|+ +++.|++++...+..++++++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999 4666999999999 9999999998888888999999999 444443 7899999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....+.+......+++.+.+.|+|||+++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2232333366788999999999999999864
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=1.5e-17 Score=152.44 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=82.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
|++.+.+.....+|.+|||+|||||.++..+++. + ..+|+|+|+|+ |++.|+++....+.. +|+++++|+++++++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFP 113 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCC
Confidence 3333443345678899999999999999999884 3 45999999999 999999999988876 699999999999999
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++||+|++. +.+.+..++...++++.|+|||||+++.
T Consensus 114 d~sfD~v~~~---fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 114 DNSFDAVTCS---FGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp TT-EEEEEEE---S-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred CCceeEEEHH---hhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 9999999984 4466667788999999999999999873
No 12
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.72 E-value=8.5e-18 Score=150.73 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=115.8
Q ss_pred CcccCCCCCCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhcc-CCCC------CCEEEEEcCCCChHHHHHHHc
Q 015306 71 DVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-FLFK------DKVVLDVGAGTGILSLFCAKA 143 (409)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~-~~~~------~~~VLDlGcG~G~l~~~la~~ 143 (409)
+..++.++..++ ..||+.-+.+...+.| +..|.....+-+.... ...| |++|||+|||+|+++..||+.
T Consensus 35 ~~~eV~~f~~la--~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArl 110 (282)
T KOG1270|consen 35 DVDEVKKFQALA--FTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARL 110 (282)
T ss_pred cHHHHHHHHHhc--ccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhh
Confidence 335566776666 7799988887766666 5666666666666544 1233 478999999999999999999
Q ss_pred CCCEEEEEecHH-HHHHHHHHHHHcCCCC-----cEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHh
Q 015306 144 GAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDK 217 (409)
Q Consensus 144 g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~ 217 (409)
|+ .|+|||+++ +++.|++........+ ++++.+.+++.+. ++||.|+|..+ +.|..++..+++.+.+
T Consensus 111 ga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsev---leHV~dp~~~l~~l~~ 183 (282)
T KOG1270|consen 111 GA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEV---LEHVKDPQEFLNCLSA 183 (282)
T ss_pred CC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHH---HHHHhCHHHHHHHHHH
Confidence 86 999999999 9999999865544333 3777888887765 56999999554 7777899999999999
Q ss_pred cccCCeEEEccC
Q 015306 218 WLVDDGIVLPDK 229 (409)
Q Consensus 218 ~LkpgG~lip~~ 229 (409)
+|||||.++..+
T Consensus 184 ~lkP~G~lfitt 195 (282)
T KOG1270|consen 184 LLKPNGRLFITT 195 (282)
T ss_pred HhCCCCceEeee
Confidence 999999988654
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=1.9e-15 Score=118.54 Aligned_cols=94 Identities=24% Similarity=0.359 Sum_probs=79.2
Q ss_pred EEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccCh
Q 015306 127 LDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 205 (409)
Q Consensus 127 LDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~ 205 (409)
||+|||+|..+..+++.+..+|+++|+++ +++.++++.... .+.++.+|++++++++++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence 89999999999999999777999999999 999999987653 3669999999999999999999997654433
Q ss_pred hHHHHHHHHHHhcccCCeEEEc
Q 015306 206 NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 206 ~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7888999999999999999873
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=3.1e-15 Score=128.68 Aligned_cols=104 Identities=32% Similarity=0.406 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCCChHHHHHH-Hc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCA-KA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la-~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs 195 (409)
.++.+|||+|||+|.++..++ +. +..+++|+|+|+ +++.|++++...++. +++++++|+.+++ ++ ++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 467899999999999999999 43 456999999999 999999999999997 6999999999976 55 89999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+ +.+......+++.+.++|++||.++...
T Consensus 80 ~~~---l~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 80 NGV---LHHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EST---GGGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCc---hhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 755 3455677889999999999999998543
No 15
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.63 E-value=4.1e-15 Score=131.64 Aligned_cols=100 Identities=25% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||+|||+|.+++.+++ .+..+|+++|+++ +++.|+++++.+++++ ++++++|+.++.. .++||+|++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEEEcc
Confidence 34589999999999999999987 5567999999999 9999999999999876 9999999999876 57999999864
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ ..++.++..+.++|||||++++.
T Consensus 121 ~-------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 121 V-------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred c-------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 35678899999999999998843
No 16
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.63 E-value=4e-15 Score=139.26 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=92.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHH--cCCCCcEEEEEccccccc
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~ 184 (409)
+.+.+.+.....++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++... .....+++++++|+++++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 4444444445678899999999999999999884 4 35999999999 99999877542 222346999999999999
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++++||+|++... +++..++..++.++.++|||||.++..
T Consensus 141 ~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 141 FDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 98889999998543 455567889999999999999998754
No 17
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=4.7e-15 Score=144.04 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++....++.++++++.+|+.++++++++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~- 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES- 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-
Confidence 57789999999999999999995345999999999 9999999999988888899999999999888899999999543
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..+...++.++.++|||||.++..
T Consensus 196 --~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 196 --GEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred --hhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 344456788999999999999998854
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=6.5e-15 Score=132.13 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.++++....++.+ ++++..|+.+++++ ++||+|++..+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~fD~I~~~~~ 104 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFD-GEYDFILSTVV 104 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcC-CCcCEEEEecc
Confidence 45678999999999999999999876 999999999 9999999999888854 89999999887765 68999999865
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+++ .......++..+.++|+|||.++
T Consensus 105 ~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 105 LMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred hhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 4433 34567899999999999999865
No 19
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.61 E-value=2.9e-15 Score=140.97 Aligned_cols=112 Identities=27% Similarity=0.374 Sum_probs=88.2
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
+.++...++|.+. ..++++|||+|||||+|++.+++.|+++|+|+|+++ +++.|++|+..|++.+++.+. ...+
T Consensus 146 ~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~- 220 (295)
T PF06325_consen 146 PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED- 220 (295)
T ss_dssp HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-
T ss_pred HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-
Confidence 4466667777754 578899999999999999999999999999999999 999999999999999877663 2222
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
...++||+|++|.+. ..+..++..+.++|+|||.+|.+
T Consensus 221 -~~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 221 -LVEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp -TCCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred -cccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEEEc
Confidence 224899999999753 34556778888999999999943
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=1.3e-14 Score=136.10 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=89.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
...+.+.+...+.+|.+|||||||.|.+++.+++. |+ +|+||.+|+ ..+.+++.+...|+.+++++...|..+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 34455666678899999999999999999999995 66 999999999 99999999999999999999999998865
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+||.|||-.+..++. ....+.+++.+.++|||||+++.+
T Consensus 126 -~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp --S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred -CCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4899999976544442 357789999999999999999854
No 21
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.60 E-value=8.8e-15 Score=124.38 Aligned_cols=136 Identities=26% Similarity=0.405 Sum_probs=117.8
Q ss_pred hhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 015306 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (409)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (409)
.||.++|.|..|...|..+|.... ...+.|+|+|+|.++..+|++ +.+|+|+|.+| ..+.|.+++.-+|.. ++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NW 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ce
Confidence 578899999999999999998643 368999999999999999998 88999999999 999999999888874 59
Q ss_pred EEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccc
Q 015306 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239 (409)
Q Consensus 174 ~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~ 239 (409)
+++.+|+.+..+ +.+|+|+|++++..+..+... .++.++..+|+.++.+||+....-+.|+..
T Consensus 83 evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qV-pV~n~vleFLr~d~tiiPq~v~~~a~pv~~ 145 (252)
T COG4076 83 EVVVGDARDYDF--ENADVVICEMLDTALIEEKQV-PVINAVLEFLRYDPTIIPQEVRIGANPVRR 145 (252)
T ss_pred EEEecccccccc--cccceeHHHHhhHHhhccccc-HHHHHHHHHhhcCCccccHHHhhccCcccc
Confidence 999999999988 689999999988888777766 456666679999999999987766666653
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.60 E-value=1.2e-14 Score=133.78 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=95.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.+++.+.+.....++.+|||+|||+|.++..+++. + ..+|+|+|+++ +++.|++++...++ ++++++.+|+.++++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC
Confidence 44455555566678899999999999999999984 3 46999999999 99999999988777 459999999999887
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.++||+|++... +.+......+++++.++|+|||.++.
T Consensus 111 ~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 DDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 7789999998543 44445677899999999999999874
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=5.9e-15 Score=132.22 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=85.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.+++++..+++. +.+...|+...+++ ++||+|++..
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~~~ 102 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFSTV 102 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEEec
Confidence 345567999999999999999999875 999999999 999999998888874 78888888766655 6899999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.+++ +......+++.+.++|||||+++
T Consensus 103 ~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 103 VFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 54433 33567889999999999999855
No 24
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.60 E-value=1.5e-14 Score=127.35 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
....++.++||||||.|..++++|+.|. .|+|+|.|+ .++.+++.+...+++ |+....|+.+..++ +.||+|++.
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st 101 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVST 101 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEE
Confidence 3345678999999999999999999998 899999999 999999999998886 99999999998886 789999997
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+..++. ....+.+++.+...++|||+++.
T Consensus 102 ~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 102 VVFMFLQ-RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp SSGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEeccCC-HHHHHHHHHHHHhhcCCcEEEEE
Confidence 6655554 45778999999999999999774
No 25
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.5e-15 Score=137.72 Aligned_cols=115 Identities=24% Similarity=0.308 Sum_probs=90.2
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
+.+..-.+++.+. ..++++|||+|||+|.|++.+++.|+++|+|+|+++ +++.|++|+..|++...+.....+....
T Consensus 147 pTT~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 3455566666644 459999999999999999999999999999999999 9999999999999875333333333333
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. .++||+||+|.+. ..+..+...+.++|||||++|.+
T Consensus 225 ~~-~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 225 PE-NGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred cc-cCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEE
Confidence 22 3699999998752 34557788889999999999954
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=7.7e-15 Score=137.16 Aligned_cols=103 Identities=27% Similarity=0.271 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.++..+++.|. +|+++|+|+ +++.|+++....++.++++++++|+.++. +..++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999999865 999999999 99999999999888778999999998874 44589999998654
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+...+..++..+.++|||||+++.
T Consensus 122 ---l~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 122 ---LEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred ---HHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 33335667889999999999999863
No 27
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=1.6e-14 Score=133.61 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=100.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.-.+.+.+...+.+|.+|||||||.|.+++.+|+.-..+|+|+++|+ +.+.+++.+...|+.++++++..|..++.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 34456666788999999999999999999999995345999999999 99999999999999988999999999876
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++||-|||-.|..++.. ...+.++..+.++|+|||.++.+.
T Consensus 136 e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 136 EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEE
Confidence 55999999766444433 457899999999999999988543
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=2.2e-14 Score=126.66 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.++.. +..+|+|+|.|+ +++.++++++.+++.+ ++++++|+.++.. .++||+|+++.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~-~~~fD~I~s~~~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH-EEQFDVITSRAL 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc-cCCccEEEehhh
Confidence 35889999999999999999875 356899999999 9999999999988864 9999999998743 479999998642
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++.+++.+.++|+|||.++..
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEEEE
Confidence 24556788889999999998843
No 29
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.57 E-value=6.2e-14 Score=122.83 Aligned_cols=114 Identities=27% Similarity=0.327 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCC-EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (409)
+..+.+.+... ++.+|||+|||+|.+++.+++.+.. +|+++|+++ +++.+++++..+++.+ ++++..|..+..
T Consensus 20 t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~ 94 (170)
T PF05175_consen 20 TRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC
T ss_pred HHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc
Confidence 33455555432 7789999999999999999996544 899999999 9999999999999987 999999997754
Q ss_pred CCCCceeEEEEecccccccC--hhHHHHHHHHHHhcccCCeEEE
Q 015306 185 LPVTKVDIIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 226 (409)
. .++||+|+++++.+.... ......++....++|||||.++
T Consensus 95 ~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 95 P-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp C-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred c-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 3 589999999986322211 1246888999999999999986
No 30
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.56 E-value=4.4e-14 Score=126.11 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=99.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCC------CEEEEEecHH-HHHHHHHHHHHcCCCCc--EEEEEcc
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECSQ-MANMAKQIVEANGFSNV--ITVLKGK 179 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~------~~V~~vD~s~-~~~~a~~~~~~~~~~~~--i~~~~~d 179 (409)
|.+.....+...++.+|||++||||-++..+.+ .+. .+|+.+|+|+ |+..++++..+.++... +.|+.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 455555556677889999999999999999988 344 7999999999 99999999988787654 9999999
Q ss_pred cccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 180 ~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++++++++.+||..++ .+.+.+-.++++.+++++|+|||||++.
T Consensus 168 AE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred cccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999996 5667777889999999999999999876
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.56 E-value=4.1e-14 Score=136.15 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=88.2
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.....++++|||||||+|.++..+++.|+..|+|+|+|+ ++..++......+...++.++.++++++++ .++||+|+|
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s 195 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFS 195 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence 344467899999999999999999999888899999999 887655443333333469999999999987 589999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+ ++|..++..+++.+++.|+|||.++..
T Consensus 196 ~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 196 MGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 544 445567788999999999999999865
No 32
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.55 E-value=3.1e-14 Score=116.60 Aligned_cols=105 Identities=25% Similarity=0.356 Sum_probs=86.8
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEeccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~ 199 (409)
|.+|||+|||+|.+++.+++.+..+++|+|+++ .++.|+.++..+++.++++++++|+.+.. ++.++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999998767999999999 99999999999999888999999999986 667999999999743
Q ss_pred ccccC-----hhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLLF-----ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~~-----~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..... ......+++.+.++|||||.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 21111 12346889999999999999873
No 33
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.55 E-value=6.1e-14 Score=133.62 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=87.9
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.......++++|||||||+|.++..++..|+..|+|+|+|+ |+..++......+...++.+..+++++++.. .+||+
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~ 191 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDT 191 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCE
Confidence 333345677899999999999999999998888999999999 9876544332222234688999999988765 68999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
|+|..+ +.|-..+..++.++++.|||||.++...
T Consensus 192 V~s~gv---L~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMGV---LYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcch---hhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 999655 4444677889999999999999998643
No 34
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.54 E-value=3.9e-14 Score=128.68 Aligned_cols=108 Identities=30% Similarity=0.360 Sum_probs=91.2
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~DvV 193 (409)
.......+|||+|||+|.+++.+|++ ...++++||+++ +++.|+++++.|+|.++|+++++|+.++.. ...+||+|
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 33445789999999999999999996 657999999999 999999999999999999999999999863 34579999
Q ss_pred EEecccccccChh----------------HHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|. |+-.+.. .++.+++...++|||||.+.
T Consensus 120 i~NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 120 ICNPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred EeCCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 99985 3332221 35788999999999999976
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.53 E-value=6.1e-14 Score=131.45 Aligned_cols=111 Identities=26% Similarity=0.284 Sum_probs=89.0
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.....+.++.+|||||||+|..+..+++....+|+|+|+|+ +++.|+++... .+++.++.+|+.+.++++++||+|
T Consensus 45 l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 45 LSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred HHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEE
Confidence 33456788899999999999999999874344999999999 99999987653 256999999999888877899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++.....++ ...+...+++.+.++|||||.++...
T Consensus 122 ~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 122 YSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 985322222 12367899999999999999998643
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.53 E-value=3.8e-14 Score=113.05 Aligned_cols=95 Identities=23% Similarity=0.373 Sum_probs=78.2
Q ss_pred EEEEcCCCChHHHHHHHc---C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc-c
Q 015306 126 VLDVGAGTGILSLFCAKA---G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM-G 199 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~---g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~-~ 199 (409)
|||+|||+|..+..+++. | ..+++|+|+|+ +++.+++.....+. +++++++|+.+++...++||+|++... .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999986 3 26999999999 99999999988766 489999999998877789999999432 3
Q ss_pred ccccChhHHHHHHHHHHhcccCCe
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG 223 (409)
.+ ........+++.+.++|+|||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 33 566778899999999999998
No 37
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.53 E-value=6.4e-14 Score=130.27 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+..++++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 357789999999999999888872 456999999999 9999999999888877899999999987654 5999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
....+++. ......+++.+.+.|||||.++...
T Consensus 132 ~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76544443 3456789999999999999998653
No 38
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=2.1e-13 Score=129.53 Aligned_cols=112 Identities=25% Similarity=0.324 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+....+.+... ..++.+|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++.+++.+...+... .
T Consensus 146 t~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~ 221 (288)
T TIGR00406 146 TSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P 221 (288)
T ss_pred HHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c
Confidence 33344444432 357899999999999999999999888999999999 999999999999988778888776432 2
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++||+|+++.+. ..+..++..+.++|||||.++.+
T Consensus 222 ~~~~fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 222 IEGKADVIVANILA------EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred cCCCceEEEEecCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 34789999997642 34567888899999999999854
No 39
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.51 E-value=8.4e-14 Score=121.17 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=90.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
+....-.++||+|||.|.++..||.+ ..+++++|+|+ +++.|++++.. . .+|++++.++.+.. |.++||+||..
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~-P~~~FDLIV~S 113 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFW-PEGRFDLIVLS 113 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCC-CCCCeeEEEEe
Confidence 33344468999999999999999998 56999999999 99999999864 3 35999999998875 45999999998
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchhhhccccccccc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGF 256 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 256 (409)
-++|++....++..++..+...|+|||.+|..+. .......|.+..|-
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~------------rd~~c~~wgh~~ga 161 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA------------RDANCRRWGHAAGA 161 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-------------HHHHHHTT-S--H
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe------------cCCcccccCcccch
Confidence 8899998777889999999999999999996542 23345558877664
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.51 E-value=8.9e-14 Score=129.73 Aligned_cols=107 Identities=25% Similarity=0.274 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.+.+.....++.+|||+|||+|.++..+++.| .+|+++|+|+ +++.|+++.. .+.++.+|++++++++++|
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcE
Confidence 333333444467899999999999999998876 4999999999 9999987642 2568899999988887899
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|+++.. +.+..++..++.++.++|+|||.++..
T Consensus 105 D~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 105 DLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99999754 444457789999999999999999854
No 41
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.51 E-value=3.7e-13 Score=111.04 Aligned_cols=104 Identities=23% Similarity=0.307 Sum_probs=84.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~DvVv 194 (409)
....++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++++...++. +++++.+|+... ....++||+|+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEE
Confidence 44566789999999999999999985 557999999999 999999999888875 489999987653 22236899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+... ......+++.+.++|+|||.++..
T Consensus 94 ~~~~------~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 94 IGGS------GGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ECCc------chhHHHHHHHHHHHcCCCCEEEEE
Confidence 8532 134568899999999999999864
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.50 E-value=2e-13 Score=128.93 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHH-cCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~-~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.+.++.+|||||||+|..+..+++ .|. .+|+++|+++ +++.|+++....++. +++++.+|++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 456889999999999998888777 353 4899999999 999999999888875 699999999998887789999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+. .+......+++++.++|||||+++..
T Consensus 153 ~~v~---~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 153 NCVI---NLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred cCcc---cCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 7653 33356678899999999999999864
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=1.7e-13 Score=130.26 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||+|||+|..+..+++.|. +|+|+|.|+ +++.+++++..+++ ++++...|+....++ ++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~-~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQ-EEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccccc-CCccEEEEcchh
Confidence 3456999999999999999999875 999999999 99999999998887 488999998876664 899999998655
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++ .......+++.+.++|+|||+++
T Consensus 195 ~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 195 MFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 444 34567899999999999999965
No 44
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.49 E-value=1.2e-13 Score=127.42 Aligned_cols=146 Identities=23% Similarity=0.222 Sum_probs=109.6
Q ss_pred CCCcccCCCCCCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEE
Q 015306 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHV 148 (409)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V 148 (409)
++++++..+++..+ +.||+.+.....+..+.. .....+.......++.+|||||||+|.++..+++.+. +|
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v 73 (233)
T PRK05134 3 NVDPAEIAKFSALA--ARWWDPNGEFKPLHRINP------LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DV 73 (233)
T ss_pred cccHHHHHHHHHHH--HHHhccCCCcHHHHHhhH------HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eE
Confidence 34555555666555 778988887766655432 2223344334456789999999999999999998865 89
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++|+++ +++.+++++...+. .++++..++.+.. ...++||+|++..+ +.+...+..++..+.++|+|||.++
T Consensus 74 ~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 74 TGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred EEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEE
Confidence 9999999 99999998877665 3788888888765 23478999998543 4455667788999999999999988
Q ss_pred cc
Q 015306 227 PD 228 (409)
Q Consensus 227 p~ 228 (409)
..
T Consensus 149 v~ 150 (233)
T PRK05134 149 FS 150 (233)
T ss_pred EE
Confidence 54
No 45
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=1.9e-13 Score=127.80 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=83.1
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++. +++++++|++++. +.++||+
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCceE
Confidence 33355567899999999999999999985 345899999999 99998752 3789999998874 4579999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|++..+.+ +..+...++..+.++|||||.++..
T Consensus 93 v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 93 VVSNAALQ---WVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEehhhh---hCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 99976533 3356788999999999999998754
No 46
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.48 E-value=1.6e-13 Score=125.65 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=86.7
Q ss_pred CEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
++|||||||+|.++..+++. +..+|+|+|+|+ +++.+++++...++.++++++..|+...+++ ++||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~--- 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV--- 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHH---
Confidence 47999999999999999884 456999999999 9999999999999988999999999776655 68999998544
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+......+++.+.++|||||.++..
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 333356789999999999999999864
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=4.3e-13 Score=136.64 Aligned_cols=106 Identities=25% Similarity=0.241 Sum_probs=88.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. +...+++++.+|+...++++++||+|+|.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 34567889999999999999999985345999999999 9999998765 44456999999999888877899999996
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+ +.+..++..++.++.++|||||.++..
T Consensus 340 ~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 340 DT---ILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred Cc---ccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 44 444467789999999999999999865
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=8e-13 Score=128.76 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..+.+|||+|||+|.+++.+++. +..+|+++|.|+ +++.|++++..++.. .+++++..|+.... +..+||+|+|+
T Consensus 227 ~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-~~~~fDlIlsN 305 (378)
T PRK15001 227 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAVLCN 305 (378)
T ss_pred ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-CCCCEEEEEEC
Confidence 34569999999999999999985 466999999999 999999999988753 36899999886542 33689999999
Q ss_pred ccccccc--ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.+... .......++....+.|+|||.++.
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 7543221 223456788889999999999874
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=8.8e-13 Score=119.08 Aligned_cols=106 Identities=26% Similarity=0.294 Sum_probs=84.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
.+.+.....++.+|||||||+|..+..+++. + ..+|+++|.++ +++.|++++..+++.++++++.+|..+......+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 3444445678899999999999999999884 3 45999999999 9999999999998877799999999875444578
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
||+|++... +. .+..++.+.|+|||+++.
T Consensus 143 fD~Ii~~~~---~~------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 143 FDAIIVTAA---AS------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred ccEEEEccC---cc------hhhHHHHHhcCcCcEEEE
Confidence 999998643 11 222456788999999863
No 50
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=4.4e-13 Score=125.57 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=85.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
.+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++. .++.++.+|+.++.. .++|
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-~~~f 94 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-PQAL 94 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-CCCc
Confidence 3344455677899999999999999999984 456999999999 999998764 248899999987754 3799
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|+++.+.+ +..+...++..+.++|||||.++..
T Consensus 95 D~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 95 DLIFANASLQ---WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred cEEEEccChh---hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999976533 3356678999999999999998864
No 51
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.46 E-value=5.5e-13 Score=123.44 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 47789999999999999999884 356899999999 9999999988776666799999999988764 58999986
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
...+++. ......+++.+.+.|||||.++...
T Consensus 130 ~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhCC-HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 5444332 3456789999999999999998654
No 52
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.46 E-value=8.3e-13 Score=125.03 Aligned_cols=106 Identities=26% Similarity=0.417 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|++++.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC
Confidence 34579999999999999999985 456999999999 9999999999999887899999998653 34468999999863
Q ss_pred cccc-----------cCh------------hHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFL-----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l-----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|.- .++ .....++..+.++|+|||+++..
T Consensus 199 -y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 -YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred -CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 221 111 12357788889999999998854
No 53
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.45 E-value=5.9e-13 Score=119.93 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-cccc--CCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~DvVvs~ 196 (409)
++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++. +++++++|+ +.++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6679999999999999999884 456899999999 999999999988874 599999999 7665 556889999986
Q ss_pred ccccccc--C-h--hHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL--F-E--NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~--~-~--~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....... + . ...+.+++.+.++|||||.++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 4321111 1 0 12467899999999999998853
No 54
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.45 E-value=8.2e-13 Score=123.02 Aligned_cols=106 Identities=28% Similarity=0.404 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+....+.+... ..++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++.+.+.+..++
T Consensus 106 t~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~------ 177 (250)
T PRK00517 106 TRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD------ 177 (250)
T ss_pred HHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC------
Confidence 33444455432 457899999999999999999888887899999999 999999999999885555544332
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+||+|+++... ..+..++..+.++|||||.++.+
T Consensus 178 --~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 178 --LKADVIVANILA------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred --CCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 279999997531 34567788899999999999854
No 55
>PRK14967 putative methyltransferase; Provisional
Probab=99.44 E-value=1.6e-12 Score=119.03 Aligned_cols=105 Identities=26% Similarity=0.285 Sum_probs=85.3
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||+|||+|.++..+++.+..+|+++|+++ +++.+++++..+++ +++++.+|+.+. ++.++||+|++++
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECC
Confidence 3567789999999999999999998777999999999 99999999988876 388999998764 3457899999986
Q ss_pred ccccccCh-------------------hHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFE-------------------NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~lip 227 (409)
. |....+ ..+..++..+.++|||||+++.
T Consensus 110 P-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 110 P-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred C-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 322211 1256678888999999999884
No 56
>PRK08317 hypothetical protein; Provisional
Probab=99.44 E-value=1.7e-12 Score=119.65 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=93.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.++++.. ....+++++.+|+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCC
Confidence 34444555566788899999999999999999984 356999999999 9999988733 233569999999998887
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.++||+|++..+ +.+..++..+++.+.++|||||.++...
T Consensus 84 ~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 7789999998654 4444567889999999999999988654
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.43 E-value=1.7e-12 Score=116.60 Aligned_cols=106 Identities=26% Similarity=0.338 Sum_probs=87.1
Q ss_pred hccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCcee
Q 015306 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVD 191 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D 191 (409)
......++.+|||+|||+|.+++.+++. + ..+|+++|.++ +++.|++++..+++.++++++.+|+.+.. ...++||
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 3456788999999999999999999873 3 46999999999 99999999999986667999999997642 2236899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.|++.. +...+..+++.+.++|+|||+++.
T Consensus 114 ~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 114 RIFIGG------GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEEECC------CcccHHHHHHHHHHHcCCCcEEEE
Confidence 999842 124567889999999999999884
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=2.6e-12 Score=114.35 Aligned_cols=101 Identities=27% Similarity=0.276 Sum_probs=82.9
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
....++.+|||||||+|.+++.+++. +..+|+++|+++ +++.|++++..+++. +++++.+|+.. .++ ++||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~-~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP-GKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC-cCCCEEEE
Confidence 44568889999999999999999985 456999999999 999999999988875 59999998753 333 68999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
... . ..+..++..+.+.|+|||+++.
T Consensus 104 ~~~---~---~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 104 GGS---G---GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCC---c---cCHHHHHHHHHHhcCCCeEEEE
Confidence 532 1 2356788889999999999885
No 59
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=1.3e-12 Score=124.89 Aligned_cols=104 Identities=26% Similarity=0.454 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
+.+|||+|||+|.+++.+++. +..+|+++|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|++++. |
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP-y 211 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPP-Y 211 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCC-C
Confidence 368999999999999999984 466999999999 9999999999999887899999998653 33468999999863 2
Q ss_pred cc-----------cCh------------hHHHHHHHHHHhcccCCeEEEcc
Q 015306 201 FL-----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 201 ~l-----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.- .++ .....++..+.++|+|||.++..
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 111 12357788889999999998853
No 60
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.43 E-value=1.7e-12 Score=119.77 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=90.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||+|||+|.++..+++.+ ..+|+++|+++ +++.+++++..+++..+++++.+|+.+.+++.++||+|+
T Consensus 47 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 47 LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred hCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 334577899999999999999999965 47999999999 999999998877666779999999998877668899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... +.+...+..++..+.++|+|||.++.
T Consensus 127 ~~~~---l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFG---LRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred Eecc---cccCCCHHHHHHHHHHhccCCcEEEE
Confidence 8533 44556778899999999999999874
No 61
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.43 E-value=1.2e-12 Score=125.85 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||||||+|.++..+++ .+..+|+++|.|+ |++.|+++... .+++++.+|++++++++++||+|++...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999998887 4556999999999 99999987642 3488999999998887789999998644
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+..+...+++++.++|||||.++.
T Consensus 188 ---L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 188 ---IEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ---hhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 33345567889999999999999864
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.43 E-value=1.4e-12 Score=115.23 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++..++. +++++.+|+.+.. .++||+|++++.
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPP 91 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCC
Confidence 34667899999999999999999876 999999999 99999999998876 3899999987653 368999999864
Q ss_pred cccccC------------------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLF------------------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~------------------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+.... ......++..+.++|||||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 322211 11256788999999999999874
No 63
>PRK06922 hypothetical protein; Provisional
Probab=99.43 E-value=1.4e-12 Score=132.76 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVv 194 (409)
...++.+|||||||+|.++..+++ .+..+|+|+|+|+ |++.|+++....+ .++.++++|+.+++ +++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEE
Confidence 345788999999999999888887 5567999999999 9999998876554 34889999998876 6678999999
Q ss_pred Eeccccccc----------ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLL----------FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++.+.+.+. ....+..+++++.++|||||.++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 875433221 1246778999999999999999864
No 64
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=5.5e-13 Score=115.20 Aligned_cols=94 Identities=26% Similarity=0.250 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.|. +|+|+|+++ +++. ..+.....+......+.++||+|+|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 57889999999999999999988888 999999999 8877 1133333333344455689999999755
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..++..+++.+.++|||||.++..
T Consensus 88 ---l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 88 ---LEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp ---GGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred ---HhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 445567899999999999999998854
No 65
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.42 E-value=1.7e-12 Score=118.25 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=82.4
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.+.....++.+|||||||+|.++..+++.. ..+|+++|.++ +++.|++++..+++. +++++.+|..+......+|
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcccCCC
Confidence 3333456789999999999999999999853 34799999999 999999999999984 5999999998764444689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|++.... ..+...+.+.|+|||+++.
T Consensus 148 D~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 148 DRIYVTAAG---------PKIPEALIDQLKEGGILVM 175 (215)
T ss_pred CEEEEcCCc---------ccccHHHHHhcCcCcEEEE
Confidence 999985421 1223456688999999874
No 66
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=2.1e-12 Score=117.15 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.......++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|++++...++. +++++.+|......+.++|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCcCCCc
Confidence 333455678999999999999999999885 3 35999999999 999999999988874 5999999998765555789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|++... . ..+...+.+.|||||+++.
T Consensus 147 D~I~~~~~---~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 147 DRIYVTAA---G------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CEEEECCC---c------ccchHHHHHhhCCCcEEEE
Confidence 99998532 2 1223455678999999763
No 67
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.41 E-value=2.7e-12 Score=117.19 Aligned_cols=112 Identities=23% Similarity=0.257 Sum_probs=90.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
+...+.......++.+|||+|||+|.++..+++.+. .+++++|+++ +++.++++.. ...++.++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 333344334445789999999999999999998654 5999999999 9999988775 335689999999998776
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.++||+|++... +.+...+..+++.+.++|+|||+++.
T Consensus 104 ~~~~D~i~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 104 DNSFDAVTIAFG---LRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCcEEEEEEeee---eCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 678999998543 45556788999999999999999884
No 68
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.41 E-value=3.7e-12 Score=110.05 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=91.1
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
....+...++.+++|||||||.+++.++.. +..+|||+|.++ +++..++|.++.+.+ +++++.+++-+.-....++|
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCCCCC
Confidence 344567889999999999999999999974 477999999999 999999999999975 59999999988644434799
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.|+... ...++.+++.+...|||||+++.+.
T Consensus 105 aiFIGG-------g~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 105 AIFIGG-------GGNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEEECC-------CCCHHHHHHHHHHHcCcCCeEEEEe
Confidence 999632 2577899999999999999999543
No 69
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.41 E-value=2.3e-12 Score=124.90 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=93.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
...++.......++.+|||+|||+|.+++.++..|. +|+|+|+++ |+..|++++...++.+ +.++.+|+.+++++.+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccC
Confidence 344444445567889999999999999998888755 899999999 9999999999999877 8999999999887768
Q ss_pred ceeEEEEeccccccc-------ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|+++++ |... .......++..+.++|||||+++.
T Consensus 248 ~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 248 SVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred CCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 9999999864 3221 113357889999999999998773
No 70
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.41 E-value=5.8e-14 Score=111.54 Aligned_cols=95 Identities=24% Similarity=0.298 Sum_probs=61.5
Q ss_pred EEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C-CCCceeEEEEecccccc
Q 015306 127 LDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L-PVTKVDIIISEWMGYFL 202 (409)
Q Consensus 127 LDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~-~~~~~DvVvs~~~~~~l 202 (409)
||||||+|.++..+++. +..+++++|+|+ |++.|++++...+... ...+..+..+.. . ..++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999885 566999999999 9999998888876533 334443333332 1 12599999997654444
Q ss_pred cChhHHHHHHHHHHhcccCCeEE
Q 015306 203 LFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
.++..+++.+.++|||||++
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 78889999999999999986
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.41 E-value=4.3e-12 Score=116.22 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=107.0
Q ss_pred cccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHH
Q 015306 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
..||+.++.+..+..+ +..+.+...+.+........+.+|||+|||+|.++..+++.+. +|+++|+++ +++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~ 86 (224)
T TIGR01983 10 HEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLH 86 (224)
T ss_pred HHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHH
Confidence 5688888877766655 5666666666665432234578999999999999999988765 799999999 99999999
Q ss_pred HHHcCCCCcEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 164 VEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 164 ~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+...+.. ++++...|+.+.... .++||+|++..+ +.+...+..++..+.++|+|||.++..
T Consensus 87 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 87 AKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8877653 489999999887644 378999998543 444567788999999999999998753
No 72
>PRK05785 hypothetical protein; Provisional
Probab=99.40 E-value=1.9e-12 Score=118.55 Aligned_cols=90 Identities=23% Similarity=0.254 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
++.+|||||||||.++..+++....+|+|+|+|+ |++.|++. ..++++|++++++++++||+|++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~--- 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSF--- 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecC---
Confidence 4789999999999999999986335999999999 99998763 2357899999999889999999954
Q ss_pred cccChhHHHHHHHHHHhcccCCe
Q 015306 201 FLLFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG 223 (409)
.+++..+++.+++++.|+|||.+
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCce
Confidence 35566788899999999999954
No 73
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.40 E-value=3.7e-12 Score=120.89 Aligned_cols=126 Identities=24% Similarity=0.289 Sum_probs=93.9
Q ss_pred hcChHhHHHHHHHHHhcc-CCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 015306 101 LKDVVRTKSYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 101 l~d~~r~~~~~~~l~~~~-~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
+-++..++.+.+.+.... ...++.+|||+|||+|.+++.++.. +..+|+|+|+|+ +++.|++++..+++.+++++++
T Consensus 92 liPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~ 171 (284)
T TIGR00536 92 LIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQ 171 (284)
T ss_pred cCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 334555666665554322 1223369999999999999999985 346999999999 9999999999999877799999
Q ss_pred cccccccCCCCceeEEEEecccccc-----------cChh------------HHHHHHHHHHhcccCCeEEEcc
Q 015306 178 GKIEEIELPVTKVDIIISEWMGYFL-----------LFEN------------MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 178 ~d~~~~~~~~~~~DvVvs~~~~~~l-----------~~~~------------~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|+.+. ++..+||+|++++. |.- .+++ ....++..+.++|+|||+++..
T Consensus 172 ~d~~~~-~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 172 SNLFEP-LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred Cchhcc-CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 998763 34348999999853 211 1111 3567888889999999998854
No 74
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.40 E-value=2.4e-12 Score=126.78 Aligned_cols=110 Identities=22% Similarity=0.233 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEccccccc--C--CCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE--L--PVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~~DvVv 194 (409)
.++++|||+|||+|.+++.++..|+.+|+++|.|+ +++.|++++..|++. ++++++++|+.++. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 46889999999999999988887888999999999 999999999999986 47999999998763 1 236899999
Q ss_pred EecccccccChh-------HHHHHHHHHHhcccCCeEEEccCCc
Q 015306 195 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 195 s~~~~~~l~~~~-------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
++++ ++..... ....++....++|+|||.++..+++
T Consensus 299 lDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9985 3333221 2345556678999999999865543
No 75
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.39 E-value=2.9e-12 Score=125.07 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=97.8
Q ss_pred hhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCC
Q 015306 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSN 171 (409)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~ 171 (409)
+......+-++..++.+.+.+.... .++.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..++.
T Consensus 225 f~V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-- 300 (423)
T PRK14966 225 FAVNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-- 300 (423)
T ss_pred EEeCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--
Confidence 3344445667778888888776543 4567999999999999999887 4567999999999 99999999988775
Q ss_pred cEEEEEcccccccCC-CCceeEEEEecccccccC-----------h------------hHHHHHHHHHHhcccCCeEEEc
Q 015306 172 VITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 172 ~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++++|+.+..++ .++||+|+|+++ |.... + .....++..+.+.|+|||.++.
T Consensus 301 rV~fi~gDl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 301 RVEFAHGSWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred cEEEEEcchhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 599999999765432 368999999974 32211 1 1234677777889999999774
No 76
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=1.7e-12 Score=112.48 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=84.5
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE-EEEccccccc-CCCCceeEEEEecccc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIE-LPVTKVDIIISEWMGY 200 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~DvVvs~~~~~ 200 (409)
..||+||||||..-.+.--.+..+|+++|+++ |-++|.+.+.++...+ ++ |+.++.++++ ++++++|+||+..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~Tlv-- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCTLV-- 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEEEE--
Confidence 46899999999776555544566999999999 9999999998886544 55 9999999998 77899999999654
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+....++.+.+++..++|+|||++++
T Consensus 155 -LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 155 -LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred -EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 66667888999999999999999884
No 77
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=6.5e-12 Score=114.70 Aligned_cols=103 Identities=25% Similarity=0.250 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ ++..|++++...+..+++++.++|+.+++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45788999999999999999998755 999999999 99999999988877667999999998765 78999998543
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+++ ....+..++..+.+++++++++..
T Consensus 129 l~~~-~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHY-PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhC-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3222 234567788888899988877664
No 78
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.38 E-value=3.5e-12 Score=129.88 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=101.3
Q ss_pred hhhhHHhhcChHhHHHHHHHHHhccC------------------------CCCCCEEEEEcCCCChHHHHHHH-cCCCEE
Q 015306 94 FGIHEEMLKDVVRTKSYQNVIYQNKF------------------------LFKDKVVLDVGAGTGILSLFCAK-AGAAHV 148 (409)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~l~~~~~------------------------~~~~~~VLDlGcG~G~l~~~la~-~g~~~V 148 (409)
+......|-+++.++.+.+.+..... ..++.+|||+|||+|.+++.++. .+..+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 45556677788888888877654321 11346899999999999998887 466799
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccccc------------Ch----------
Q 015306 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL------------FE---------- 205 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~------------~~---------- 205 (409)
+|+|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|+|++. |... ++
T Consensus 166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~l~~~v~~~EP~~AL~gg~d 243 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPP-YISHSEKSEMAIETINYEPSIALFAEED 243 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCC-CCCchhhhhcCchhhccCcHHHhcCCcc
Confidence 9999999 9999999999999888899999998653 33468999999863 3221 11
Q ss_pred --hHHHHHHHHHHhcccCCeEEEcc
Q 015306 206 --NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 206 --~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.....++..+.++|+|||.++..
T Consensus 244 Gl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 244 GLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 12345677888999999998864
No 79
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.38 E-value=2.2e-12 Score=109.54 Aligned_cols=106 Identities=27% Similarity=0.333 Sum_probs=85.3
Q ss_pred EEEEEcCCCChHHHHHHHcCCCE-EEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc-
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAH-VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF- 201 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~-V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~- 201 (409)
+|||+|||.|.+...|++.|... .+|+|.|+ +++.|+..+++.++++.|+|.+.|+.+..+..++||+|.--.....
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 99999999999999999987544 99999999 9999999999999999999999999987665688999886321111
Q ss_pred -cc---ChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 202 -LL---FENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 202 -l~---~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
|. ..+.+...+..+.++|+|||+++..++
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 11 122334567888899999999986543
No 80
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.38 E-value=3.6e-12 Score=118.06 Aligned_cols=108 Identities=20% Similarity=0.147 Sum_probs=83.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.....|++|||||||.|..+..+++.|++.|+|+|++. .....+......+....+.++..-+++++. .+.||+|+|-
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~M 189 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSM 189 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEe
Confidence 44578999999999999999999999999999999998 554433333333333445555567788776 5899999996
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+ +.|...+-..+..++..|+|||.+|..+
T Consensus 190 GV---LYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 190 GV---LYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred ee---hhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 55 4555677788999999999999988543
No 81
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.37 E-value=4.2e-12 Score=113.67 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~DvVvs~ 196 (409)
...+|||||||+|.++..+++ .+..+|+|+|+++ +++.|++++...++. +++++++|+.++. ++.+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456999999999999999998 4566999999999 999999999988886 5999999998754 445689999987
Q ss_pred ccccccc--C---hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL--F---ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....... + .-..+.++..+.++|||||.++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 4322111 0 011257889999999999998754
No 82
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.36 E-value=5.8e-12 Score=123.95 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=86.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..+.+.....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. ++ .+++...|..++ .++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~f 229 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQF 229 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCC
Confidence 34444456778999999999999999999985344999999999 9999999874 33 388888888765 3789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++..+..++ +...++.+++.+.++|||||.++..
T Consensus 230 D~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999997653333 2345678999999999999998864
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.36 E-value=1.3e-11 Score=110.74 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=83.5
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 190 (409)
+.......++.+|||+|||+|.++..+++. +..+|+++|.++ +++.+++++..+++. +++++.+|+.+. ......+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCC
Confidence 444455678899999999999999999874 456999999999 999999999988885 599999998652 2111346
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|.++... ...+..++..+.++|+|||.++..
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 7776532 134578899999999999998854
No 84
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=4.8e-12 Score=116.71 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..+.+|||||||+|.++..+++.+ ..+|+++|+++ ++..+++... .++.++.+|+.+.++++++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 345799999999999999999864 45799999999 9998887654 3588999999998877789999999654
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++..++..++..+.++|+|||.++..
T Consensus 108 ---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 ---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 444456788999999999999999854
No 85
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=8.8e-12 Score=120.67 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
...+|||+|||+|.++..+++. +..+|+++|+|+ +++.|++++..+++. .+++..|+... . .++||+|+++++.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~-~~~fDlIvsNPPF 271 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-I-KGRFDMIISNPPF 271 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-c-CCCccEEEECCCc
Confidence 3458999999999999999985 456999999999 999999999999875 56777887653 2 4789999999753
Q ss_pred cccc--ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... .......++..+.+.|||||.++.
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 3221 124567889999999999999863
No 86
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.35 E-value=1.2e-11 Score=111.96 Aligned_cols=102 Identities=19% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------------CCcEEEEEcccccccC
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (409)
.++.+|||+|||.|..+..+|+.|. +|+|+|+|+ +++.+.+. +++ ..+|+++++|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4678999999999999999999988 899999999 99976432 222 2358999999998764
Q ss_pred C-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. .++||.|+...+..++ .......++..+.++|||||+++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 3679999975433333 456677899999999999998653
No 87
>PLN03075 nicotianamine synthase; Provisional
Probab=99.35 E-value=1.4e-11 Score=115.50 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCChH-HHHHHH--cCCCEEEEEecHH-HHHHHHHHHHH-cCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGIL-SLFCAK--AGAAHVYAVECSQ-MANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l-~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.++++|+|||||.|.+ ++.++. .+..+++++|.++ +++.|++.+.. .++.++++|..+|+.+.....++||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3779999999997744 444443 3466899999999 99999999964 78888999999999886433478999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+.++ .......+++.+.+.|+|||.++...
T Consensus 202 ~ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AALVGM--DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred eccccc--ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 732211 12567899999999999999998543
No 88
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=1.2e-11 Score=110.48 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.++..++.+|+++|.++ +++.++++++.+++. +++++++|+.+.. ...++||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 46789999999999999977666778999999999 999999999999875 5999999997743 12357999999985
Q ss_pred cccccChhHHHHHHHHHHh--cccCCeEEEccC
Q 015306 199 GYFLLFENMLNTVLYARDK--WLVDDGIVLPDK 229 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~--~LkpgG~lip~~ 229 (409)
| ..+..+.++..+.. +|+|+|+++.+.
T Consensus 131 -y---~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 131 -F---RKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -C---CCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 2 12344455555543 478888887553
No 89
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.34 E-value=8e-12 Score=117.05 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=82.9
Q ss_pred CCCCCEEEEEcCCCCh----HHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHH----cC----------------
Q 015306 120 LFKDKVVLDVGAGTGI----LSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA----NG---------------- 168 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~----l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~~~----~~---------------- 168 (409)
..++.+|+|+|||+|. +++.+++.+ ..+|+|+|+|+ |++.|++.+.. .+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999995 677777642 24899999999 99999875310 01
Q ss_pred ------CCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 169 ------FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.++|+|.+.|+.+.+++.++||+|+|..+..++ .......++..+.+.|+|||+++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 2246899999999987766899999996554433 23456789999999999999998643
No 90
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=1.6e-11 Score=115.98 Aligned_cols=125 Identities=24% Similarity=0.300 Sum_probs=94.2
Q ss_pred hhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 015306 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
.+.++..++.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++. .....++.++.
T Consensus 86 ~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~ 164 (275)
T PRK09328 86 VLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQ 164 (275)
T ss_pred ceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEE
Confidence 34455666677776664445567789999999999999999985 467999999999 9999999987 34445699999
Q ss_pred cccccccCCCCceeEEEEecccccccC------------------------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 178 GKIEEIELPVTKVDIIISEWMGYFLLF------------------------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 178 ~d~~~~~~~~~~~DvVvs~~~~~~l~~------------------------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+.+.. +.++||+|++++. |.-.. ......++..+.++|+|||.++.
T Consensus 165 ~d~~~~~-~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 165 GDWFEPL-PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ccccCcC-CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 9986532 2478999999863 22110 12235677888899999999885
No 91
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.33 E-value=5.9e-12 Score=133.25 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC-CCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL-PVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~~DvVvs~~ 197 (409)
.++++|||+|||+|.+++.+++.|+.+|++||+|+ +++.|++++..|++. ++++++++|+.++.. ..++||+||+++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 35789999999999999999999988999999999 999999999999996 689999999977531 136899999997
Q ss_pred ccccccC---------hhHHHHHHHHHHhcccCCeEEEccC
Q 015306 198 MGYFLLF---------ENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 198 ~~~~l~~---------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
. ++... ......++..+.++|+|||.++.+.
T Consensus 617 P-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 P-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred C-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4 32221 2234677888889999999988643
No 92
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.4e-11 Score=116.03 Aligned_cols=128 Identities=24% Similarity=0.317 Sum_probs=94.1
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (409)
.....+-++..++.+.+++......... +|||+|||+|.+++.++.. +...|+|+|+|+ +++.|++|+..+++ .++
T Consensus 85 v~~~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~ 162 (280)
T COG2890 85 VDEGVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRV 162 (280)
T ss_pred eCCCceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccE
Confidence 3344556677787777775422222222 8999999999999999995 456999999999 99999999999998 557
Q ss_pred EEEEcccccccCCCCceeEEEEecccccccC-----------hh------------HHHHHHHHHHhcccCCeEEEcc
Q 015306 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------EN------------MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 174 ~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~-----------~~------------~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.++.+|..+- .. ++||+||||+. |.-.. ++ ....++....+.|+|||.++..
T Consensus 163 ~~~~~dlf~~-~~-~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 163 LVVQSDLFEP-LR-GKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred EEEeeecccc-cC-CceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 7777776543 22 59999999973 43221 11 2357778888999999988753
No 93
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.33 E-value=2.2e-11 Score=113.36 Aligned_cols=118 Identities=26% Similarity=0.296 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 106 r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
.+..+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++. +++++++|+.+.
T Consensus 72 ~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 149 (251)
T TIGR03534 72 DTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP 149 (251)
T ss_pred ChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc
Confidence 34444444443332 34569999999999999999984 456999999999 999999999998885 599999999773
Q ss_pred cCCCCceeEEEEecccccccC------------h------------hHHHHHHHHHHhcccCCeEEEc
Q 015306 184 ELPVTKVDIIISEWMGYFLLF------------E------------NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~------------~------------~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.++||+|+++++ +.... + .....++..+.++|+|||.++.
T Consensus 150 -~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 -LPGGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred -CcCCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 44589999999864 22111 0 1124678889999999999875
No 94
>PRK14968 putative methyltransferase; Provisional
Probab=99.33 E-value=2.3e-11 Score=108.07 Aligned_cols=105 Identities=25% Similarity=0.290 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.++..+++.+ .+|+++|.|+ +++.+++++..+++.++ +.++.+|+.+.. ...+||+|++++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-RGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-cccCceEEEECCC
Confidence 577899999999999999999984 5999999999 99999999998887654 889999987643 3358999999753
Q ss_pred cccc------------------cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFL------------------LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l------------------~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.... .+...+..+++++.++|||||.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2110 0122356788999999999998774
No 95
>PRK04266 fibrillarin; Provisional
Probab=99.32 E-value=2.3e-11 Score=111.02 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=78.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D 191 (409)
..+.++.+|||+|||+|.++..+++. +..+|+|+|.++ |++.+.+++... .++.++.+|+.+. .++ ++||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccCC
Confidence 56788999999999999999999995 445899999999 999887776543 3489999998752 223 5699
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++.. .......++..+.++|||||.++.
T Consensus 144 ~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9997532 112234568899999999999885
No 96
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.32 E-value=1.2e-11 Score=111.38 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=77.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++. +..+++|+|+|+ +++.|+++.. .+.++++|+.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECC
Confidence 356789999999999999999885 567999999999 9999987642 36788899888 66778999999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.+++. ...+..+++++.++++ +.++
T Consensus 114 vL~hl~-p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 114 VLIHIN-PDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred hhhhCC-HHHHHHHHHHHHhhcC--cEEE
Confidence 655543 4567788888888873 4444
No 97
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.5e-11 Score=114.09 Aligned_cols=112 Identities=24% Similarity=0.229 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
+.|.+......+.+|||+|||.|.+++.+++ .+..+++-+|.|. +++.|++++..|++.+. .++..|..+-.. ++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v~--~k 224 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPVE--GK 224 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccccc--cc
Confidence 3344445555566999999999999999999 4578999999999 99999999999998764 677777655432 49
Q ss_pred eeEEEEecccccccCh--hHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFE--NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 226 (409)
||+|+|++..+-.... ....+++....+.|++||.+.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 9999999864422111 112478888999999999864
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.31 E-value=2.7e-11 Score=110.02 Aligned_cols=103 Identities=21% Similarity=0.191 Sum_probs=81.2
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.......++.+|||+|||+|.++..+++.+ .+|+++|.++ +++.|++++...++.+ ++++.+|..+...+.++||+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCcCE
Confidence 3334556788999999999999999888874 4899999999 9999999999988865 99999998654333478999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|++... . ..+...+.+.|+|||+++.
T Consensus 148 I~~~~~---~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 148 ILVTAA---A------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred EEEccC---c------hhhhHHHHHhcCCCcEEEE
Confidence 998532 1 1223456789999999874
No 99
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.31 E-value=3.2e-11 Score=115.85 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=91.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
...+.+.....++.+|||||||+|.++..+++. +..+++++|..++++.+++++...++.++++++.+|+.+.+++ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C
Confidence 344444455677889999999999999999985 5569999998339999999999999989999999999876554 3
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+|+|++..+.+.. .......+++.+.+.|+|||+++...
T Consensus 216 ~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 216 ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7998875432222 23445688999999999999998544
No 100
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=1.7e-11 Score=124.96 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=84.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~DvVv 194 (409)
....++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++.. +...+++++++|+.. ++++.++||+|+
T Consensus 33 l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 33 LPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred cCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCEEEEe
Confidence 444567899999999999999999974 5999999999 998776532 223469999999964 456668999999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++.+.+++.. ..+..++..+.++|||||+++...
T Consensus 109 ~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 109 SNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred hhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9876555532 346789999999999999998654
No 101
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.4e-11 Score=103.66 Aligned_cols=77 Identities=29% Similarity=0.371 Sum_probs=69.4
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
......|++|+|+|||||.+++.++-.|+.+|+|+|+++ +++.+++|..+ +..++.|+.+|+.++. .++|.++.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEE
Confidence 456788999999999999999999999999999999999 99999999998 3356999999999886 67999999
Q ss_pred ecc
Q 015306 196 EWM 198 (409)
Q Consensus 196 ~~~ 198 (409)
|+.
T Consensus 115 NPP 117 (198)
T COG2263 115 NPP 117 (198)
T ss_pred CCC
Confidence 963
No 102
>PHA03412 putative methyltransferase; Provisional
Probab=99.30 E-value=3.6e-11 Score=108.56 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~----g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.+.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|+++.. ++.++.+|+....+. ++||+||++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~-~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD-TLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc-CCccEEEEC
Confidence 3679999999999999999874 345899999999 9999998753 378999999876654 799999999
Q ss_pred cccccccC---------hhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLF---------ENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~---------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+...-+.. ......++....+++++|+.|+|..
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 84321110 1124567888888999999988875
No 103
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.29 E-value=4.8e-11 Score=110.98 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=86.0
Q ss_pred hHhHHHHHHHHHhccC-CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015306 104 VVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~-~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (409)
+..++.+.+.+..... ..++.+|||+|||+|.+++.+++ .+..+|+++|+|+ +++.|++++..++ ++++++|+
T Consensus 67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 3345555555543322 22346899999999999999987 4456999999999 9999999998875 47888998
Q ss_pred ccccC--CCCceeEEEEeccccccc------------Ch------------hHHHHHHHHHHhcccCCeEEEcc
Q 015306 181 EEIEL--PVTKVDIIISEWMGYFLL------------FE------------NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 181 ~~~~~--~~~~~DvVvs~~~~~~l~------------~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+... ..++||+|+++++ |... ++ ..+..++....++|+|||+++..
T Consensus 143 ~~~l~~~~~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhhcchhcCCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 76421 1257999999974 3211 00 12357788888999999998843
No 104
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.29 E-value=4.7e-11 Score=108.52 Aligned_cols=102 Identities=23% Similarity=0.170 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------------CCcEEEEEccccccc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIE 184 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~ 184 (409)
..++.+|||+|||.|..++.+|+.|. +|+|||+|+ +++.+.+ ++++ ..+|++.++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 34678999999999999999999988 899999999 9987642 2222 256899999999885
Q ss_pred CC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 185 LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 ~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. .+.||+|+...+..++ .......++..+.++|+|||+++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred cccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 43 2589999976543333 45667899999999999998644
No 105
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=2.3e-11 Score=111.90 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=86.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCce
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (409)
..++++|||||||+|..++.+++. +..+|+++|.++ +++.|++++..+++.++++++.+|+.+.- + +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 356889999999999988888873 367999999999 99999999999999999999999997752 1 13689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
|+|+.+.- ......++..+.++|+|||+++....
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99998531 24556778888899999999986543
No 106
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.1e-11 Score=106.68 Aligned_cols=101 Identities=24% Similarity=0.218 Sum_probs=82.7
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
...+...++.+|||||||+|..+..+++... +|+++|..+ +.+.|++++...|+.| |.++++|...-..+..+||.|
T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred HHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCEE
Confidence 3345678999999999999999999999733 999999999 9999999999999977 999999998876666899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+...- . ...++ .+.+.||+||+++
T Consensus 143 ~Vtaa---a--~~vP~----~Ll~QL~~gGrlv 166 (209)
T COG2518 143 IVTAA---A--PEVPE----ALLDQLKPGGRLV 166 (209)
T ss_pred EEeec---c--CCCCH----HHHHhcccCCEEE
Confidence 98532 1 12222 3346789999976
No 107
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.27 E-value=4.9e-11 Score=111.92 Aligned_cols=113 Identities=17% Similarity=0.047 Sum_probs=89.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||+|||+|..+..+++. + ...|+++|+++ +++.+++++..+++.+ +++++.|+..+....++||+|+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEEE
Confidence 34578899999999999999998884 2 45899999999 9999999999999864 9999999987654446799999
Q ss_pred Eeccccccc------------Chh-------HHHHHHHHHHhcccCCeEEEccCCc
Q 015306 195 SEWMGYFLL------------FEN-------MLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 195 s~~~~~~l~------------~~~-------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
+++..+... .+. ....++....++|||||+++.++++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 976433210 111 1245888889999999999966554
No 108
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.6e-11 Score=107.83 Aligned_cols=105 Identities=23% Similarity=0.275 Sum_probs=93.6
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
|.....+.+|.+|||.|.|+|.++..+++ . +..+|+.+|..+ .++.|++|+...++.+++++..+|+.+...+ ..|
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-ccc
Confidence 45557889999999999999999999998 3 457999999999 9999999999999999999999999998877 599
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+.++ +++-.+++.+...|||||.++.
T Consensus 165 Dav~LDm--------p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 165 DAVFLDL--------PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred CEEEEcC--------CChHHHHHHHHHHhCCCcEEEE
Confidence 9999865 4667889999999999999874
No 109
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.27 E-value=7.5e-12 Score=109.31 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 106 r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
|+.-.++.+. ........+|.|||||+|..+..+++ .+...++|+|.|+ |++.|++... +++|..+|+.++
T Consensus 15 RtRPa~dLla-~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w 87 (257)
T COG4106 15 RTRPARDLLA-RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTW 87 (257)
T ss_pred ccCcHHHHHh-hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhc
Confidence 3434444443 35667778999999999999999999 5778999999999 9999977653 389999999998
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+ ...|+++++.+...+ ++-..++..+...|.|||++-.+
T Consensus 88 ~p~-~~~dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 88 KPE-QPTDLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred CCC-Cccchhhhhhhhhhc---cccHHHHHHHHHhhCCCceEEEE
Confidence 755 899999998764444 44456777777899999998643
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.26 E-value=6.9e-11 Score=114.80 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~DvVvs~ 196 (409)
..+..+||||||+|.++..+|+ .+...++|+|+++ ++..|.+++..+++.+ +.++++|+..+ .++++++|.|++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEEe
Confidence 4567999999999999999998 4567999999999 9999999999999865 99999999765 3667899999986
Q ss_pred cccccccCh-h--HHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFE-N--MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~-~--~~~~~l~~~~~~LkpgG~lip~ 228 (409)
......-.. . ..+.++..+.++|+|||.+...
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 432111000 0 1268899999999999998754
No 111
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=6.5e-11 Score=118.65 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=88.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
....++.+|||+|||+|..+..+++.+ ..+|+++|.++ +++.+++++..+|+. ++++++|+.++. ++.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 445788999999999999999999854 36999999999 999999999998874 789999998754 234689999
Q ss_pred EEecccccc------------cChh-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 194 ISEWMGYFL------------LFEN-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 194 vs~~~~~~l------------~~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
++++..+.. .... ....++..+.++|||||.++.+++++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 987642211 0111 12467888899999999999766543
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.25 E-value=3.9e-11 Score=113.22 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C---CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..+.+|||+|||+|.++..+++. + ...|+|+|+|+ +++.|+++. .++.+..+|+.++++++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 35578999999999999988874 2 23799999999 999997653 2388999999999888889999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
... +..+.++.++|||||+++.
T Consensus 158 ~~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 158 IYA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred ecC----------CCCHHHHHhhccCCCEEEE
Confidence 431 1234678899999999984
No 113
>PRK04457 spermidine synthase; Provisional
Probab=99.25 E-value=4.4e-11 Score=111.92 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~ 197 (409)
.++++|||||||+|.++..+++ .+..+|+++|+++ +++.|++++...+..++++++.+|+.+.. ...++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999887 5667999999999 99999999876655567999999987653 2236899999875
Q ss_pred cccc-ccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYF-LLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.... ....-....+++.+.+.|+|||+++.+
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3211 111112368899999999999999853
No 114
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.25 E-value=7.9e-12 Score=111.11 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=97.8
Q ss_pred cccccccCchhhhH-HhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CC--CEEEEEecHH-HHHH
Q 015306 85 DYYFDSYSHFGIHE-EMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA--AHVYAVECSQ-MANM 159 (409)
Q Consensus 85 ~~~~~~~~~~~~~~-~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~--~~V~~vD~s~-~~~~ 159 (409)
..||+.+. ..|. .+++|+.....-...+.......+ .+||+||||.|....++.+. .. -+|+++|.|+ +++.
T Consensus 36 ~k~wD~fy--~~~~~rFfkdR~wL~~Efpel~~~~~~~~-~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 36 SKYWDTFY--KIHENRFFKDRNWLLREFPELLPVDEKSA-ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred hhhhhhhh--hhccccccchhHHHHHhhHHhhCccccCh-hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 66888772 3333 245565443322222322222222 28999999999999999984 22 5899999999 9999
Q ss_pred HHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceE
Q 015306 160 AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (409)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (409)
.+++...+. .++.....|+.... ...+++|+|++..+.+.+. ......++..+.++|||||.+++..+..|
T Consensus 113 vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 113 VKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred HHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 988876554 44666666665433 3368999999876655554 44567889999999999999998765544
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=7e-11 Score=118.69 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=90.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~ 190 (409)
....+|.+|||+|||+|..+..+++. + ..+|+|+|+++ +++.+++++...|+.+ |+++++|+.++. ...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 44578899999999999999999984 3 45999999999 9999999999999965 999999998875 334689
Q ss_pred eEEEEecccccc---c-Ch--------h-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 191 DIIISEWMGYFL---L-FE--------N-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 191 DvVvs~~~~~~l---~-~~--------~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
|.|++++..+.. . +. . ....++..+.++|||||+++.+++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999987543221 1 11 1 13577888999999999999766553
No 116
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.24 E-value=5e-11 Score=111.72 Aligned_cols=127 Identities=22% Similarity=0.230 Sum_probs=92.5
Q ss_pred HHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEE
Q 015306 98 EEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITV 175 (409)
Q Consensus 98 ~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~ 175 (409)
..++-|...++.+.... ..+++|||+-|=||.+++.++..|+.+|++||.|. +++.+++++..|+++ +++++
T Consensus 105 tGlFlDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~ 178 (286)
T PF10672_consen 105 TGLFLDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRF 178 (286)
T ss_dssp TSS-GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEE
T ss_pred ceEcHHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence 34555666665554442 46899999999999999999999999999999999 999999999999986 68999
Q ss_pred EEcccccccC---CCCceeEEEEecccccccC---hhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 176 LKGKIEEIEL---PVTKVDIIISEWMGYFLLF---ENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 176 ~~~d~~~~~~---~~~~~DvVvs~~~~~~l~~---~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+..|+.+..- ..++||+||++|+.+.-.. ......++..+.++|+|||.++.+++
T Consensus 179 ~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 179 IQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred EecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9999987431 2479999999985432111 23456778888899999999885443
No 117
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=7.1e-11 Score=106.71 Aligned_cols=129 Identities=21% Similarity=0.227 Sum_probs=97.8
Q ss_pred HhhcChHhHHHHHHHHHhcc---CCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 015306 99 EMLKDVVRTKSYQNVIYQNK---FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (409)
Q Consensus 99 ~~l~d~~r~~~~~~~l~~~~---~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (409)
..+-++..++.+.+++.... ....+..+||+|||+|.+++.++. .+...|+|||.|+ ++..|.+|+..+++.+++
T Consensus 122 gVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 122 GVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred CeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 35557778888888776533 234455899999999999999988 6788999999999 999999999999999999
Q ss_pred EEEEccccccc-----CCCCceeEEEEecccccccCh------------h------------HHHHHHHHHHhcccCCeE
Q 015306 174 TVLKGKIEEIE-----LPVTKVDIIISEWMGYFLLFE------------N------------MLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 174 ~~~~~d~~~~~-----~~~~~~DvVvs~~~~~~l~~~------------~------------~~~~~l~~~~~~LkpgG~ 224 (409)
.+++-+++... +..+++|+++||+. |....+ + .+-.+..-..|+|+|||.
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~ 280 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGF 280 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCe
Confidence 99987666543 33589999999973 432211 1 122444556799999998
Q ss_pred EEcc
Q 015306 225 VLPD 228 (409)
Q Consensus 225 lip~ 228 (409)
+.++
T Consensus 281 ~~le 284 (328)
T KOG2904|consen 281 EQLE 284 (328)
T ss_pred EEEE
Confidence 8754
No 118
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.24 E-value=1.1e-10 Score=107.32 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++...+..+++.+..+|+.. ..++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 35678999999999999999999866 699999999 999999999888876679999999543 3478999998543
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+++ ....+..+++.+.+++++++.+.
T Consensus 137 l~~~-~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHY-PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcC-CHHHHHHHHHHHHhhcCCeEEEE
Confidence 2222 23456778888888776555443
No 119
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=9.3e-11 Score=104.27 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-CC-CceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-PV-TKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~~-~~~DvVvs 195 (409)
.++.+|||++||+|.+++.++.+|+++|+++|.++ +++.+++++..+++.++++++++|+.+.. + .. ..+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 46889999999999999999999999999999999 99999999999998778999999996542 2 11 24899998
Q ss_pred ecccccccChhHHHHHHHHH--HhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~~ 229 (409)
+|. |.- .....++..+ ..+|+++|.++...
T Consensus 128 DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPP-FFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 874 322 2233444433 35789999988654
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.24 E-value=7.4e-11 Score=118.29 Aligned_cols=115 Identities=15% Similarity=0.052 Sum_probs=88.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~DvV 193 (409)
....++.+|||+|||+|..+..+++ .+..+|+|+|+++ +++.+++++...|+...+++..+|...... +.++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 4457889999999999999999998 4556999999999 999999999999986445557777765443 45789999
Q ss_pred EEecccccc---cChh----------------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 194 ISEWMGYFL---LFEN----------------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 194 vs~~~~~~l---~~~~----------------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
++++..+.. ...+ ....++..+.++|||||.++.+++++
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 987532221 1111 13578888899999999999776654
No 121
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.24 E-value=6.2e-11 Score=107.22 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCCC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVT 188 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 188 (409)
...++.+|||||||+|.++..+++. + ..+|+|||++++. .+.+ ++++++|+.+.. +..+
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~~-v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVG-VDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCCC-cEEEecCCCChHHHHHHHHHhCCC
Confidence 3577889999999999999999885 3 3599999998831 2223 899999998853 4567
Q ss_pred ceeEEEEecccccccChh--------HHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|+|++..++..... ....++..+.++|||||.++.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 899999986443322110 124678899999999999884
No 122
>PHA03411 putative methyltransferase; Provisional
Probab=99.24 E-value=7.8e-11 Score=108.80 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+.+|||+|||+|.+++.+++. +..+|+++|+++ +++.++++. .+++++++|+.++... .+||+|++++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~-~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESN-EKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhccc-CCCcEEEEcCCc
Confidence 4568999999999999988874 356999999999 999998864 2488999999987644 789999999754
Q ss_pred ccccChhH-----------------HHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENM-----------------LNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~-----------------~~~~l~~~~~~LkpgG~li 226 (409)
..+..... +..++.....+|+|+|.++
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 33222111 2355566667778887654
No 123
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.23 E-value=5e-11 Score=116.00 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=100.1
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcE
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVI 173 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i 173 (409)
.+..++.|...+..+... ...|++|||+.|=||.+++.+|..|+++|++||.|. .++.|++|+..||++ +++
T Consensus 197 ~kTGfFlDqR~~R~~l~~------~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 197 LKTGFFLDQRDNRRALGE------LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRH 270 (393)
T ss_pred ccceeeHHhHHHHHHHhh------hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence 333445555544444322 234999999999999999999999999999999999 999999999999985 668
Q ss_pred EEEEccccccc----CCCCceeEEEEecccccccCh-------hHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 174 TVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 174 ~~~~~d~~~~~----~~~~~~DvVvs~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
.++++|+.++- -...+||+||.+|+.+ .... .+...++..+.++|+|||.++.+++.
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF-~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSF-ARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred eeehhhHHHHHHHHHhcCCcccEEEECCccc-ccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999998864 1245999999998533 3222 24467788888999999999976554
No 124
>PRK06202 hypothetical protein; Provisional
Probab=99.23 E-value=5.8e-11 Score=109.40 Aligned_cols=101 Identities=18% Similarity=0.164 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~----g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
..++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++....+ +++...+...++.++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEE
Confidence 356789999999999999888762 3 34899999999 9999988765432 566666666666566899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++.+.+++.. ..+..+++++.++++ ++.++
T Consensus 134 ~~~~~lhh~~d-~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 134 TSNHFLHHLDD-AEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EECCeeecCCh-HHHHHHHHHHHHhcC-eeEEE
Confidence 99765454432 335688999999998 44433
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=8.5e-11 Score=102.87 Aligned_cols=106 Identities=22% Similarity=0.293 Sum_probs=79.8
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.+.....++.+|||||||+|.++..+++. ..+|+++|+++ +++.+++++.. .++++++++|+.++.++..++|.|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCEE
Confidence 33345567889999999999999999998 46999999999 99999988754 246999999999988775679999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++++. |.. ....+..++.. ..+.++|.++.+
T Consensus 82 i~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLP-YNI-STPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EECCC-ccc-HHHHHHHHHhc--CCCcceEEEEEE
Confidence 99864 333 22344444432 224577777754
No 126
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=9.8e-11 Score=117.16 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=90.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvV 193 (409)
....+|.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++...|+.+ ++++++|+..++ ...++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEE
Confidence 44578899999999999999999884 356999999999 9999999999999864 999999998765 334789999
Q ss_pred EEecccccccC---hh----------------HHHHHHHHHHhcccCCeEEEccCCc
Q 015306 194 ISEWMGYFLLF---EN----------------MLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 194 vs~~~~~~l~~---~~----------------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
++++..+.... .+ ....++..+.++|||||.++.++++
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99754332211 01 2256788889999999999977665
No 127
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.4e-10 Score=116.89 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=88.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....+|.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++...|+. +|+++.+|+.++. +.++||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEE
Confidence 34568899999999999999988873 245999999999 999999999999985 5999999998875 347899999
Q ss_pred Eeccccccc------------Chh-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 195 SEWMGYFLL------------FEN-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 195 s~~~~~~l~------------~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
+++...... ... ....++..+.++|||||+++.+++++
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 875322111 111 12368889999999999999776653
No 128
>PLN02672 methionine S-methyltransferase
Probab=99.22 E-value=1.3e-10 Score=125.69 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=100.2
Q ss_pred hhhhHHhhcChHhHHHHHHHHHhccC-CCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC
Q 015306 94 FGIHEEMLKDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS 170 (409)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~l~~~~~-~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~ 170 (409)
+......+-++..++.+.+.+..... ..++.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.|++|+..|+++
T Consensus 89 ~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 89 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 34445567778888888888543211 124579999999999999999985 457999999999 999999999987542
Q ss_pred ---------------CcEEEEEcccccccCC-CCceeEEEEecccccccC------------h-----------------
Q 015306 171 ---------------NVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF------------E----------------- 205 (409)
Q Consensus 171 ---------------~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~------------~----------------- 205 (409)
++++++++|+.+.... ..+||+|||++. |.... +
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~ 247 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGF 247 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCC
Confidence 5799999999775422 137999999973 32211 0
Q ss_pred -------hHHHHHHHHHHhcccCCeEEEccCC
Q 015306 206 -------NMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 206 -------~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
.....++....++|+|||.++....
T Consensus 248 ~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 248 VEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1125677778899999999986643
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.22 E-value=5.3e-11 Score=107.09 Aligned_cols=103 Identities=22% Similarity=0.216 Sum_probs=76.9
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.+.+.+.+|.+|||||||+|..+..+++. |. .+|++||..+ +++.|++++...++. +++++.+|.........+|
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SE
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCc
Confidence 444456889999999999999999999994 53 3799999999 999999999998886 5999999987755445789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|.|++... .. ..+ ..+.+.|++||+++
T Consensus 143 D~I~v~~a---~~--~ip----~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 143 DRIIVTAA---VP--EIP----EALLEQLKPGGRLV 169 (209)
T ss_dssp EEEEESSB---BS--S------HHHHHTEEEEEEEE
T ss_pred CEEEEeec---cc--hHH----HHHHHhcCCCcEEE
Confidence 99998532 21 222 33456799999987
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.8e-10 Score=110.31 Aligned_cols=101 Identities=24% Similarity=0.198 Sum_probs=79.2
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.....++.+|||||||+|.++..+++. + ..+|+++|.++ +++.|++++..+++. ++.++.+|..+.....++||+|
T Consensus 75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~~~~fD~I 153 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPEFAPYDVI 153 (322)
T ss_pred hcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccccCCccEE
Confidence 345678899999999999999999984 3 24799999999 999999999998884 5999999987765444689999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.. .. ..+...+.+.|+|||+++.
T Consensus 154 i~~~---g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 154 FVTV---GV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred EECC---ch------HHhHHHHHHhcCCCCEEEE
Confidence 9742 11 1223345678999998763
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=1.3e-10 Score=117.16 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=89.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++..+|+.+ ++++++|+.++. ++ ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhc-ccCCE
Confidence 34567889999999999999999984 356999999999 9999999999999865 999999998763 33 78999
Q ss_pred EEEeccccccc------------ChhH-------HHHHHHHHHhcccCCeEEEccCCce
Q 015306 193 IISEWMGYFLL------------FENM-------LNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 193 Vvs~~~~~~l~------------~~~~-------~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
|++++..+... .+.. ...++..+.++|||||.++.+++++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99986422110 0111 2457888899999999999655543
No 132
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.20 E-value=1.4e-10 Score=110.78 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.++.+|||||||+|.+++.+++.|. +|+|+|+|+ |++.|+++....+. ..++++...|+.++ +++||+|+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3678999999999999999999865 899999999 99999999876421 13588999998765 378999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+..++.. .....++..+.+ +.+||.+|
T Consensus 219 ~~vL~H~p~-~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQ-DKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCH-HHHHHHHHHHHh-hcCCEEEE
Confidence 644332222 233456666654 45677665
No 133
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.20 E-value=1.1e-10 Score=111.68 Aligned_cols=107 Identities=11% Similarity=-0.014 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCC----ceeE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVT----KVDI 192 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~----~~Dv 192 (409)
.++.+|||+|||+|..+..+++.. ..+|+++|+|+ |++.|++++....-.-++.++++|+.+. .++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 466899999999999999999864 35899999999 9999998877543223478899999873 34322 2223
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++....+ .........+++.+.+.|+|||.++..
T Consensus 142 ~~~gs~~~-~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIG-NFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEeccccc-CCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33322212 223556778999999999999998853
No 134
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.20 E-value=1.6e-10 Score=90.92 Aligned_cols=101 Identities=31% Similarity=0.354 Sum_probs=81.5
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEecccccc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFL 202 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~DvVvs~~~~~~l 202 (409)
+|+|+|||+|.++..+++.+..+++++|.++ ++..+++.....+ ..+++++..|+.+... ..+++|+|+++.+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999886677999999999 9998886444333 3569999999988764 45789999997653321
Q ss_pred cChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 203 LFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
......+++.+.+.|+|||.++..
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 567788899999999999999864
No 135
>PRK00811 spermidine synthase; Provisional
Probab=99.19 E-value=1.7e-10 Score=109.26 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C--CCcEEEEEccccccc-CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F--SNVITVLKGKIEEIE-LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~~-~~~~~~DvV 193 (409)
..+++||+||||+|.++..+++. +..+|++||+++ +++.|++.+...+ . +.+++++.+|+..+. ...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999999986 678999999999 9999999886432 2 467999999998753 234789999
Q ss_pred EEecccccccChh-HHHHHHHHHHhcccCCeEEEccCC
Q 015306 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 194 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+++.......... ....+++.+.+.|+|||+++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9975332211111 136778889999999999985433
No 136
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.19 E-value=6.8e-11 Score=104.35 Aligned_cols=105 Identities=29% Similarity=0.369 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C--CCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~DvVvs 195 (409)
.++.+|||+.||+|.+++.++.+|+++|+.||.++ ++...++|++..+..++++++..|+...- . ...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 58999999999999999999999999999999999 99999999999999888999999975543 2 3589999999
Q ss_pred ecccccccChhH-HHHHHHHHH--hcccCCeEEEccC
Q 015306 196 EWMGYFLLFENM-LNTVLYARD--KWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~lip~~ 229 (409)
+|+ |.. .. ...++..+. .+|+++|.++.+.
T Consensus 121 DPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 984 332 22 356666654 8999999998543
No 137
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.17 E-value=3e-10 Score=109.43 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.+++.+ .+|+|+|.++ +++.|++++..+++ ++++++++|+.++.. ..++||+|++++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 457899999999999999999976 5999999999 99999999999998 469999999988643 2357999999975
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-. +....+++.+ .-++|+++++.
T Consensus 250 r~-----G~~~~~~~~l-~~~~~~~ivyv 272 (315)
T PRK03522 250 RR-----GIGKELCDYL-SQMAPRFILYS 272 (315)
T ss_pred CC-----CccHHHHHHH-HHcCCCeEEEE
Confidence 22 2222333333 23567776663
No 138
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=4e-10 Score=113.62 Aligned_cols=113 Identities=23% Similarity=0.188 Sum_probs=86.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
++.+.+.+.......++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ +++.|++++..+++.+ ++++.+|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhh
Confidence 44555555555556678899999999999999999975 5999999999 9999999999999854 999999997642
Q ss_pred ---CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 ---~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+..++||+|++++.-. + ...++..+.+ ++|+++++.+
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEEE
Confidence 3346799999987522 1 2244455544 5888877643
No 139
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.16 E-value=2.5e-10 Score=102.39 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=93.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-ccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEE 182 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~ 182 (409)
.-.|...+.+ ..++++|||||++.|.-++.+|. .+ ..++++||.++ +++.|++++++.|+.++|+++. +|..+
T Consensus 47 ~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~ 123 (219)
T COG4122 47 TGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence 4455555543 35889999999999999999999 44 56999999999 9999999999999999999999 57766
Q ss_pred cc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 183 ~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
.- ...++||+|+.+. .....+.+++.+.++|+|||+++....
T Consensus 124 ~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 124 VLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 43 2358999999753 235667889999999999999986543
No 140
>PTZ00146 fibrillarin; Provisional
Probab=99.15 E-value=4.9e-10 Score=104.67 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=76.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (409)
..+.++.+|||+|||+|.++..++.. | ...|+|||+++ +.+.+.+.+... .+|.++..|+... ....++||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCC
Confidence 45688999999999999999999995 3 45899999999 876665554432 3488899998642 12236899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++.. .......++.++.++|||||.++.
T Consensus 205 vV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 205 VIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9999753 123444566678899999999885
No 141
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.15 E-value=2.8e-10 Score=99.88 Aligned_cols=106 Identities=27% Similarity=0.407 Sum_probs=75.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcC--CCCcEEEEEccccccc----CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--FSNVITVLKGKIEEIE----LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~~ 190 (409)
....++++|||||||+|..++.+++. +..+|+..|.++.++.++.++..|+ ...++.+...|..+.. +...+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45678899999999999999999997 7889999999888899999999987 5677888888775521 334689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+|++.- ++..+...+.++..+.++|+++|.++
T Consensus 121 D~IlasD---v~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 121 DVILASD---VLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp SEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred CEEEEec---ccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 9999853 35667888999999999999998755
No 142
>PLN02476 O-methyltransferase
Probab=99.15 E-value=3.7e-10 Score=105.36 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCce
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (409)
..++++|||||||+|..++.+++. + ..+|+++|.++ .++.|+++++..|+.++|+++.+|+.+.- + ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 456889999999999999999983 3 45899999999 99999999999999999999999997742 1 13689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
|+|+.+. .......+++.+.++|+|||.++....
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999754 235667888888899999999986543
No 143
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.14 E-value=2.9e-10 Score=102.00 Aligned_cols=104 Identities=21% Similarity=0.303 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~D 191 (409)
.+.++||||||++|..++.+|+. + ..+|+.+|.++ .++.|++++...|+.++|+++.+|+.+.- + +.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 56789999999999999999984 3 46999999999 99999999999999999999999998742 1 125899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+|+.+. ........++.+.++|+|||.++....
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccc
Confidence 999764 234556777788899999999996543
No 144
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.13 E-value=4.5e-10 Score=103.19 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=82.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--- 186 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--- 186 (409)
.|.....+.||.+|||.|.|+|.++..+++. +..+|+..|..+ .++.|+++++..++.+++++.+.|+....++
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 3445578899999999999999999999983 467999999999 9999999999999998999999999764442
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcc-cCCeEEE
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~li 226 (409)
+..+|.|+.++. .+-.++..+.+.| |+||+++
T Consensus 111 ~~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 111 ESDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp TTSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEE
T ss_pred cCcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEE
Confidence 367999998753 3345567777889 8999987
No 145
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.13 E-value=3.2e-10 Score=100.97 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=73.0
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--------C
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (409)
.....++.+|||+|||+|.++..+++. +..+|+++|+++ + .. .+++++++|+.+.. +
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 345678999999999999999988874 355899999999 5 11 23788888987643 3
Q ss_pred CCCceeEEEEeccccc-----ccCh---hHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYF-----LLFE---NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~-----l~~~---~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.++||+|+++...++ +.+. .....++..+.++|+|||+++.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 4568999998642211 1111 1346788999999999999885
No 146
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=1.2e-09 Score=95.14 Aligned_cols=118 Identities=22% Similarity=0.314 Sum_probs=90.1
Q ss_pred HHHHHHHhccC--CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 109 SYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 109 ~~~~~l~~~~~--~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
..++++-.... ...|.+|||+-+|+|.+++.++.+|+.+++.||.+. .+..+++|+...++..+++++..|+....
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~ 107 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK 107 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH
Confidence 34444444333 378999999999999999999999999999999999 99999999999998888999999998542
Q ss_pred -CC-CCceeEEEEecccccccChhHH--HHHHHH--HHhcccCCeEEEccCC
Q 015306 185 -LP-VTKVDIIISEWMGYFLLFENML--NTVLYA--RDKWLVDDGIVLPDKA 230 (409)
Q Consensus 185 -~~-~~~~DvVvs~~~~~~l~~~~~~--~~~l~~--~~~~LkpgG~lip~~~ 230 (409)
.. .++||+|+.+|+ |. .+.. ...+.. -..+|+|+|.++....
T Consensus 108 ~~~~~~~FDlVflDPP-y~---~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 108 QLGTREPFDLVFLDPP-YA---KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred hcCCCCcccEEEeCCC-Cc---cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 22 235999999985 32 1222 222222 4588999999986644
No 147
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.11 E-value=8.7e-10 Score=106.02 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH---------cCCCCcEEEEEccccccc----CCC
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA---------NGFSNVITVLKGKIEEIE----LPV 187 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~---------~~~~~~i~~~~~d~~~~~----~~~ 187 (409)
++.+|||||||-|.-..-....+..+++|+|++. .++.|+++... ....-...++.+|..... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7899999999999888878888899999999999 99999998832 111123677888876532 232
Q ss_pred --CceeEEEEec-ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 188 --TKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 --~~~DvVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+||+|-|-. +.|.+..+.....++..+...|+|||++|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 5999999974 66777888888999999999999999998
No 148
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=6.4e-10 Score=105.27 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=97.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 186 (409)
.+.+++.+.....+|..|||--||||.+.+.+.-.|+ +|+|+|++. |++-|+.|++..++.+ ..+... |+..++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4566677777889999999999999999999999988 999999999 9999999999998876 544444 99999998
Q ss_pred CCceeEEEEecccccccC-------hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++|.|++++ .|.-.. +.....+++...++||+||++++.
T Consensus 262 ~~~vdaIatDP-PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 262 DNSVDAIATDP-PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCccceEEecC-CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 77899999997 343322 345678888999999999988753
No 149
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.09 E-value=7e-10 Score=98.86 Aligned_cols=99 Identities=31% Similarity=0.309 Sum_probs=74.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||+.||.|.+++.+|+ ..++.|+|+|++| +++.+++++..|++.++|.++++|..++.. ...+|-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 57899999999999999999999 4467999999999 999999999999999999999999998865 58999999875
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+... ..++.+...++++||++-
T Consensus 178 p~~~-------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESS-------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred hHHH-------HHHHHHHHHHhcCCcEEE
Confidence 4222 246677778899999864
No 150
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.08 E-value=3e-11 Score=106.38 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=77.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVv 194 (409)
....+-+++||+|||||..+..+-.. +.+.+|+|+|+ |++.|.++--. + ++.++++..+. ...++||+|+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y----D--~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY----D--TLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch----H--HHHHHHHHHHhhhccCCcccchh
Confidence 33344579999999999999988776 66999999999 99998775321 1 34455554332 3458999999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.- ++.+.+.++.++.....+|+|||.+.++.
T Consensus 194 AaD---Vl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 194 AAD---VLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hhh---HHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 843 35555788999999999999999999764
No 151
>PLN02366 spermidine synthase
Probab=99.08 E-value=1.1e-09 Score=104.29 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEccccccc--CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
.++++||+||||.|.++..+++.+ ..+|+.||+++ +++.|++.+... ++ +++++++.+|...+. .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999964 67999999999 999999988653 23 358999999987653 224689999
Q ss_pred EEecccccccCh-hHHHHHHHHHHhcccCCeEEEccCCceEE
Q 015306 194 ISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (409)
Q Consensus 194 vs~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (409)
+++......... -.-..+++.+.+.|+|||+++.+....|.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 997533211110 11357889999999999999866544443
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.07 E-value=1.4e-09 Score=109.44 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=85.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
.+.+.+.+.......++.+|||+|||+|.+++.+++. +.+|+|+|+++ +++.|++++..+++. +++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHH
Confidence 3444455554445567789999999999999999987 45999999999 999999999999985 5999999997642
Q ss_pred ---CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ---~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
....+||+|+.++.-. +....+++.+.+ ++|+++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK-----GCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHHhcCCCCCEEEECcCCC-----CCCHHHHHHHHh-cCCCEEEEE
Confidence 2235799999987522 222455555543 788887664
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.07 E-value=5.8e-10 Score=99.85 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~DvVvs~~ 197 (409)
.++.+|||||||+|.++..+++.+...++|+|+++ +++.+++. +++++.+|+.+ + ++++++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 46789999999999999998876555889999999 99887641 26788889876 3 25567899999975
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (409)
+ +++..++..+++++.+.++++..
T Consensus 84 ~---l~~~~d~~~~l~e~~r~~~~~ii 107 (194)
T TIGR02081 84 T---LQATRNPEEILDEMLRVGRHAIV 107 (194)
T ss_pred H---hHcCcCHHHHHHHHHHhCCeEEE
Confidence 4 44445677788888777765433
No 154
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.07 E-value=1.3e-10 Score=102.60 Aligned_cols=120 Identities=20% Similarity=0.200 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcc--CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC-CCcEEEEEccccc
Q 015306 107 TKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-SNVITVLKGKIEE 182 (409)
Q Consensus 107 ~~~~~~~l~~~~--~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~-~~~i~~~~~d~~~ 182 (409)
+..|..++.+.. ....|.+|||.+.|-|..++.++++|+.+|+.+|.++ .++.|.-|--..++ ...|+++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 445666665543 3456999999999999999999999999999999999 99988765432222 2358999999988
Q ss_pred cc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 183 ~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+. +++++||+|+.++.-+.+-.+-.-..+.+++.|+|||||.++
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 74 778999999999876666555566889999999999999988
No 155
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.06 E-value=1.3e-09 Score=107.29 Aligned_cols=100 Identities=11% Similarity=0.125 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.++..+ .+|+|+|+++ +++.|++++..+++. +++++.+|+.+.... ..+||+|+.+++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 456899999999999999999875 5999999999 999999999999985 699999999875421 246999999986
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
-. +....+++.+. .++|+++++.+
T Consensus 310 r~-----G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 310 RR-----GIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CC-----CCcHHHHHHHH-hcCCCeEEEEE
Confidence 32 23344555553 36888877643
No 156
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=2.3e-09 Score=97.20 Aligned_cols=105 Identities=16% Similarity=0.047 Sum_probs=82.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------c----CCCCcEEEEEcccccccCC-
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------N----GFSNVITVLKGKIEEIELP- 186 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~----~~~~~i~~~~~d~~~~~~~- 186 (409)
..++.+||+.|||.|.-+..||+.|. +|+|+|+|+ +++.+.+.... . .-...|+++++|+.++...
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34678999999999999999999998 799999999 98887552100 0 0124599999999998632
Q ss_pred --CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 --~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.++||+|+-..... .....+..+..+.+.++|+|||.++
T Consensus 120 ~~~~~fD~VyDra~~~-Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 120 NNLPVFDIWYDRGAYI-ALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred cccCCcCeeeeehhHh-cCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 26899998765433 3466778899999999999999876
No 157
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.03 E-value=7.5e-10 Score=96.44 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=73.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~ 196 (409)
+.+|.+|||||||.|.+...+.+....+.+|+|+++ .+..+.+ +| +.++++|+.+.- +++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 468999999999999999988885455999999999 7665544 23 679999998743 778999999975
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-. +.....+..+++++.|+-|.+=+-+|
T Consensus 83 qt---LQ~~~~P~~vL~EmlRVgr~~IVsFP 110 (193)
T PF07021_consen 83 QT---LQAVRRPDEVLEEMLRVGRRAIVSFP 110 (193)
T ss_pred hH---HHhHhHHHHHHHHHHHhcCeEEEEec
Confidence 43 55556778888888666553333333
No 158
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.03 E-value=3.7e-09 Score=93.17 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=85.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcC-CC---------EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AA---------HVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g-~~---------~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
....++.......++..|||.-||+|.+.+.++..+ .. +++|+|+++ +++.|++|+...++.+.+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 455666666777888999999999999999988843 22 389999999 9999999999999998999999
Q ss_pred cccccccCCCCceeEEEEeccccccc--Ch----hHHHHHHHHHHhcccCCeEEE
Q 015306 178 GKIEEIELPVTKVDIIISEWMGYFLL--FE----NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 178 ~d~~~~~~~~~~~DvVvs~~~~~~l~--~~----~~~~~~l~~~~~~LkpgG~li 226 (409)
.|+.++++..+++|+||+++. |... .. .....+++.+.++|++...++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999966689999999973 4331 11 223566788888899855544
No 159
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.03 E-value=2.2e-10 Score=102.06 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=74.8
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l 202 (409)
+.++|+|||+|..++.+|.. .++|+|+|+|+ |++.|++........-..+....++.++.-+++++|+|++... +
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa---~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA---V 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh---H
Confidence 38999999999888889888 77999999999 9999988765443333345555566666555799999998532 2
Q ss_pred cChhHHHHHHHHHHhcccCCe-EEE
Q 015306 203 LFENMLNTVLYARDKWLVDDG-IVL 226 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG-~li 226 (409)
+. -+++.+...+.|+||++| .+.
T Consensus 111 HW-Fdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 111 HW-FDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred Hh-hchHHHHHHHHHHcCCCCCEEE
Confidence 22 367899999999998766 554
No 160
>PRK01581 speE spermidine synthase; Validated
Probab=99.02 E-value=2.5e-09 Score=102.55 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHH-----HHcCC-CCcEEEEEccccccc-CCCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV-----EANGF-SNVITVLKGKIEEIE-LPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~-----~~~~~-~~~i~~~~~d~~~~~-~~~~~~D 191 (409)
..+++||+||||+|..+..+++.+ ..+|++||+++ +++.|++.. ....+ +.+++++.+|+.++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999999864 67999999999 999999631 11122 468999999998853 2347899
Q ss_pred EEEEeccccccc--ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|+++....... ..-.-..+++.+.+.|+|||+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999985322111 1112257889999999999998754
No 161
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=1.5e-09 Score=96.57 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=77.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcC---------------------------
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG--------------------------- 168 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~--------------------------- 168 (409)
.....++.+|||||.+|.++..+|+ .|...|.|+|+++ .+..|+++++..-
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 4567788999999999999999999 7899999999999 9999999875321
Q ss_pred -------CCCcEEEE-------EcccccccCCCCceeEEEEeccc---ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 169 -------FSNVITVL-------KGKIEEIELPVTKVDIIISEWMG---YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 169 -------~~~~i~~~-------~~d~~~~~~~~~~~DvVvs~~~~---~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++.+. ..|+. .+....||+|+|-.+. +.-.+..-+..++..+.++|.|||++|.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 00111111 11111 1234789999983211 2223345577999999999999999984
No 162
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.01 E-value=4.7e-09 Score=98.88 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEEE
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~DvVvs 195 (409)
.+++||+||||+|.++..+++.+ ..+|+++|+++ +++.|++.+...+ + ..+++++.+|..... ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999999988865 67999999999 9999999875432 1 246888988886642 22478999999
Q ss_pred ecccccccChh-HHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.......... ....+++.+.+.|+|||+++...
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 75422111111 13577889999999999998653
No 163
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.00 E-value=1.8e-09 Score=99.80 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=87.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-----cEEEEEccccccc------C
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIE------L 185 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~------~ 185 (409)
....++..++|+|||-|.-.+-.-++|...++|+|+.+ .+..|+++.+...-.. .+.|+.+|..... +
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 34578889999999999999888899999999999999 9999988876432111 2688999886532 3
Q ss_pred CCCceeEEEEe-cccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 186 PVTKVDIIISE-WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~~~~DvVvs~-~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++.+||+|-|- .+.|.+..+.....++..+.+.|+|||++|
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 44569999986 355667777788889999999999999998
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.99 E-value=3.4e-09 Score=97.66 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-C----CCc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-P----VTK 189 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~----~~~ 189 (409)
..+.++|||||+++|.-++.+|+. + ..+|+++|.++ .++.|++++...|+.++|+++.+++.+.- + . .++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 356789999999999999999984 3 45999999999 99999999999999999999999997752 1 1 268
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
||+|+.+. ........++.+.++|+|||+++....
T Consensus 157 fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 157 FDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred ccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 99999753 234456777888899999999986543
No 165
>PRK03612 spermidine synthase; Provisional
Probab=98.98 E-value=1.8e-09 Score=110.75 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHH--HH---cCC-CCcEEEEEccccccc-CCCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIV--EA---NGF-SNVITVLKGKIEEIE-LPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~--~~---~~~-~~~i~~~~~d~~~~~-~~~~~~D 191 (409)
.++++|||||||+|.++..+++.+. .+|++||+++ +++.++++. .. ..+ +++++++.+|..+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999999999764 7999999999 999999842 21 122 257999999998753 2247899
Q ss_pred EEEEecccccccC--hhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 192 IIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 192 vVvs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+|+++........ .-.-..+++.+.+.|||||+++.+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999854321110 01124678889999999999987653
No 166
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.98 E-value=3e-09 Score=93.38 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccc-cccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~DvVvs~~~~ 199 (409)
.+.-|||||||+|+.+..+...|. ..+|+|+|+ |++.|.+.--+ -.++.+|+- .+++..+.||-+|+....
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999988884 999999999 99999863221 246677774 467888999999984222
Q ss_pred ccccC--------hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLF--------ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~--------~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+++ ...+..++..+...|++|++.+.+
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 22322 123456677789999999998743
No 167
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.98 E-value=5.4e-09 Score=99.80 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEE-ccccccc----CCCCceeEE
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLK-GKIEEIE----LPVTKVDII 193 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~~DvV 193 (409)
++.+|||||||+|.+...++. ....+++|+|+++ +++.|++++..| ++.++|+++. .+..++. .+.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999977666655 4456999999999 999999999999 7988899864 3333322 234789999
Q ss_pred EEecc
Q 015306 194 ISEWM 198 (409)
Q Consensus 194 vs~~~ 198 (409)
+|++.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99985
No 168
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.96 E-value=1.2e-08 Score=89.82 Aligned_cols=96 Identities=27% Similarity=0.348 Sum_probs=81.1
Q ss_pred EEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccc
Q 015306 125 VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l 202 (409)
+++|||+|.|.-++.+|- .+..+|+.+|.+. -+...+......++++ ++++++++++ .....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc-cccCCCccEEEeehh----
Confidence 899999999999999998 5677999999999 9999999999999975 9999999999 333489999999876
Q ss_pred cChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 203 LFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+..++.-+.++|++||.++...
T Consensus 125 ---~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 ---APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ---SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456788889999999999988543
No 169
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.95 E-value=3.1e-09 Score=96.41 Aligned_cols=107 Identities=24% Similarity=0.161 Sum_probs=81.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-c------C----CCCcEEEEEcccccccC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-N------G----FSNVITVLKGKIEEIEL 185 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-~------~----~~~~i~~~~~d~~~~~~ 185 (409)
....++.+||..|||.|.-...+|+.|. +|+|+|+|+ +++.+.+.... . + -..+|+++++|+.++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3456778999999999999999999987 999999999 98887432211 0 0 12468999999999875
Q ss_pred CC-CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 186 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~-~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. ++||+|+-.... +...+.+.+...+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 42 579999976543 34466788899999999999999954
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=7.6e-09 Score=98.14 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=72.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
.+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++...+..++++++++|+.+..+ ..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cc
Confidence 3344444566788999999999999999999974 5899999999 999999999877755679999999988765 46
Q ss_pred eeEEEEecccccc
Q 015306 190 VDIIISEWMGYFL 202 (409)
Q Consensus 190 ~DvVvs~~~~~~l 202 (409)
+|+|++++ .|.+
T Consensus 102 ~d~VvaNl-PY~I 113 (294)
T PTZ00338 102 FDVCVANV-PYQI 113 (294)
T ss_pred cCEEEecC-Cccc
Confidence 89999986 3444
No 171
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=5.2e-09 Score=99.93 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=87.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..+|.+|||.-||.|.+++.+|+.|...|+|+|++| +++.+++++..|++.++++.+++|+.++....+.+|-|++..+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 456999999999999999999999987899999999 9999999999999999999999999998755588999998543
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....++....+.+++||++..
T Consensus 266 -------~~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 -------KSAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred -------CcchhhHHHHHHHhhcCcEEEE
Confidence 2234566666688889998763
No 172
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.91 E-value=6.8e-09 Score=101.98 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
+.+|||++||+|.+++.++. .++.+|+++|+++ +++.+++|++.|++.+ ++++++|+..+....++||+|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 56899999999999999987 5667999999999 9999999999999865 78999999775321367999999874
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+....++....+.+++||++..+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 23345666655778999998865
No 173
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.88 E-value=1.6e-08 Score=90.34 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=78.5
Q ss_pred CEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~DvVvs~~~ 198 (409)
..+||||||.|.+.+.+|+ .+...++|+|+.. .+..|.+.+...+++| +.++++|+..+- ++++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999998 6778999999999 9999988888888865 999999998732 45689999998643
Q ss_pred cccccCh---h--HHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFE---N--MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~---~--~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.-..-.. . .-+.++..+.++|+|||.+...
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 3222110 0 2268899999999999988743
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.87 E-value=1.2e-08 Score=95.49 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=67.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
..+.+.......++.+|||||||+|.++..+++.+ .+|+++|+++ +++.+++++.. . ++++++++|+.+++++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch--
Confidence 33344444556788999999999999999999984 5999999999 99999988754 2 4699999999987764
Q ss_pred ceeEEEEecc
Q 015306 189 KVDIIISEWM 198 (409)
Q Consensus 189 ~~DvVvs~~~ 198 (409)
.+|.|++++.
T Consensus 91 ~~d~Vv~NlP 100 (258)
T PRK14896 91 EFNKVVSNLP 100 (258)
T ss_pred hceEEEEcCC
Confidence 5899999974
No 175
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.87 E-value=5.9e-09 Score=99.78 Aligned_cols=224 Identities=14% Similarity=0.065 Sum_probs=147.4
Q ss_pred CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc-cccChhHH--HHHHHHHHhccc
Q 015306 145 AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY-FLLFENML--NTVLYARDKWLV 220 (409)
Q Consensus 145 ~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~-~l~~~~~~--~~~l~~~~~~Lk 220 (409)
..+++-.+.++ .-....+++-...+.+ ++.+..= ...+ ++.|++.++++.- .+..-..+ -.....+...+-
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i---~t~~-ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G 463 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLSN-NESVPAI---MTSP-DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHG 463 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhh---hcCC-CCCceeecchhhhhccCchhheeeeeeHHHHHHhcC
Confidence 44677777776 5555555555544432 3332211 1233 4568777665311 11100111 122345567788
Q ss_pred CCeEEEccCCceEEEEccccccchhhhccccccccccchhhhhhh-----------ccCCeEEeeCCCcccCcccceeEe
Q 015306 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQA-----------MMEPLVDTVDQNQIVTNCQLLKTM 289 (409)
Q Consensus 221 pgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~d~~~~~~~~-----------~~~p~~~~~~~~~~ls~p~~~~~~ 289 (409)
|+-.+.|+.+.+.+.+....+++..... ...+.|||++.+++.. -++|+|+| ++.++++|..++.|
T Consensus 464 ~~~~V~P~~~~L~Ai~~kF~DL~~I~S~-~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F 540 (636)
T KOG1501|consen 464 DELRVEPHMGVLKAIPEKFEDLQNIASD-VGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGIVKGDAVEILRF 540 (636)
T ss_pred CceeeccccchhhhhhHHHHHHHhhccc-ccccccceeeehhHHHHhhchhhhhhhccchhhhc--cCeecCCceeEEEe
Confidence 9999999999999999888887765443 5678999998777654 24788988 78899999999999
Q ss_pred eCCCCCCCCCceeeeeEEEEeecceEeEEEEEEEEEEcCCCceeEeecccccCCCC----CCCCceeEEEecCCceecCC
Q 015306 290 DISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKS----RATHWKQTVLYLEDVLTICE 365 (409)
Q Consensus 290 d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~----~~~~W~q~v~~l~~p~~v~~ 365 (409)
+|....+.+ .-.+.+.+.+.-|++..|++++|. ++.||++++..-.. +-.|.+|+||+....+.-
T Consensus 541 ~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~----~~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~~t~L~~-- 609 (636)
T KOG1501|consen 541 PIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFG----GINLSTGLLSISSAGVPEWNKGYKQGVYFPITALRN-- 609 (636)
T ss_pred ccCCccccc-----eeEEEccCCCccccceeeEEeeeC----ceeecccceeecCCCCcccCccccceeEEEhHHhCC--
Confidence 999866555 456778899999999999999998 48898554432222 235677999998544333
Q ss_pred CCEEEEEEEEeeCCCCCceeEEEEEEE
Q 015306 366 GEAISGSLTVAPNKKNPRDVDIMLKYS 392 (409)
Q Consensus 366 g~~i~~~~~~~~~~~~~r~~~~~~~~~ 392 (409)
.-++.+.+.+..++. +|.++|.
T Consensus 610 ~ksl~~~~~F~~~TG-----DI~~qF~ 631 (636)
T KOG1501|consen 610 DKSLCLHALFDKSTG-----DINFQFG 631 (636)
T ss_pred CceEEEEEEEcCCCC-----ceEEEec
Confidence 336777776665553 4555553
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=9e-09 Score=97.03 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=65.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
.+.+.....++.+|||||||+|.++..+++.+. +|+|+|+++ +++.+++++.. ++++++++|+.++++++-..|
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcc
Confidence 334344567888999999999999999999865 999999999 99999887642 469999999999876522269
Q ss_pred EEEEecc
Q 015306 192 IIISEWM 198 (409)
Q Consensus 192 vVvs~~~ 198 (409)
.||+++.
T Consensus 108 ~vv~NlP 114 (272)
T PRK00274 108 KVVANLP 114 (272)
T ss_pred eEEEeCC
Confidence 9999974
No 177
>PRK04148 hypothetical protein; Provisional
Probab=98.85 E-value=3.2e-08 Score=81.81 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=72.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCCh-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP- 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~-l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 186 (409)
+.+.|.++....++.+|||||||+|. ++..+++.|. .|+|+|+++ .++.++++ .+.++.+|+.+..+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence 33445544444567899999999996 9999999876 999999999 98888764 268999999887654
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-+.+|+|.+- .....+...+-++.+-+.-+-++.|
T Consensus 75 y~~a~liysi------rpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 75 YKNAKLIYSI------RPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred HhcCCEEEEe------CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4789999983 2224444444455555554433333
No 178
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.83 E-value=2.8e-08 Score=97.00 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=72.1
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----------C-----
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----------V----- 187 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----------~----- 187 (409)
.+|||+|||+|.+++.+++. +.+|+|||.++ +++.|++++..+++.+ ++++.+|+.++... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccc
Confidence 47999999999999988886 46999999999 9999999999999864 99999999874311 0
Q ss_pred -CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 -TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 -~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+|+|+.++.-. +..+.+++.+. +|+++++.
T Consensus 277 ~~~~d~v~lDPPR~-----G~~~~~l~~l~---~~~~ivYv 309 (353)
T TIGR02143 277 SYNCSTIFVDPPRA-----GLDPDTCKLVQ---AYERILYI 309 (353)
T ss_pred cCCCCEEEECCCCC-----CCcHHHHHHHH---cCCcEEEE
Confidence 2389999998632 33345555443 36666653
No 179
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.83 E-value=1.7e-08 Score=91.93 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=64.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHH-HHHHHHHcCCCCcE-EEEEcccc----
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANM-AKQIVEANGFSNVI-TVLKGKIE---- 181 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~-a~~~~~~~~~~~~i-~~~~~d~~---- 181 (409)
.+..++.......++++|||+|||+|.++..+++.|+++|+|+|+++ ++.. ++++ .++ .+-..++.
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCH
Confidence 34445554344468889999999999999999999999999999999 7765 2322 112 22333333
Q ss_pred -cccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 182 -EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 182 -~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++...-..+|++++.. ..++..+.++|+| |.++
T Consensus 135 ~~~~~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL-----------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred hHcCCCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence 2221223567666532 2246677788888 7665
No 180
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.82 E-value=3.1e-08 Score=97.12 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
.+.+.+.+...... .+.+|||++||+|.+++.+++. +++|+|||.++ +++.|++++..+++. +++++.+|+.+..
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 34444444443322 2357999999999999988886 56999999999 999999999999985 5999999997742
Q ss_pred -CC--------------CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LP--------------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~--------------~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+. ..+||+|+.++.-. +..+.++..+.+ |+++++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILYI 318 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEEE
Confidence 10 12589999998632 233444554433 5665553
No 181
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=4.8e-08 Score=83.41 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
....+||||||+|..+.++++. +...+.++|+++ +++...+.+..|+.. +..++.|+..--.+ +++|+++.++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~-~~VDvLvfNP- 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRN-ESVDVLVFNP- 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhcc-CCccEEEECC-
Confidence 3678999999999999999983 466899999999 999999999988864 88999998776444 9999999987
Q ss_pred cccccCh-------------------hHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFE-------------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~li 226 (409)
+|....+ ...++++..+..+|.|.|.++
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 3433211 124677777888899999876
No 182
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.78 E-value=2e-08 Score=89.28 Aligned_cols=104 Identities=21% Similarity=0.149 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
...++||.|||-|..+..+...-+.+|..||+.+ .++.|++.+... .....++++..++++..+..+||+|++-|+.-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 3469999999999999877654488999999999 999999776541 22457899999999877668999999998766
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|.. .++-.++..+...|+|+|.|+.
T Consensus 134 hLTD-~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 134 HLTD-EDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp GS-H-HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHhCcCCcEEEE
Confidence 6644 5667999999999999999884
No 183
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2e-08 Score=82.43 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=73.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..|-.......|++++|+|||.|.++...+-.+...|+|+|+++ +++++.+|+....+. +.++++|+.++.+..+.|
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeE
Confidence 33444455678999999999999999777778888999999999 999999999988774 799999999998888999
Q ss_pred eEEEEecc
Q 015306 191 DIIISEWM 198 (409)
Q Consensus 191 DvVvs~~~ 198 (409)
|.++.++.
T Consensus 116 DtaviNpp 123 (185)
T KOG3420|consen 116 DTAVINPP 123 (185)
T ss_pred eeEEecCC
Confidence 99999863
No 184
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.75 E-value=2.1e-08 Score=86.84 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=62.9
Q ss_pred EEEecHH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEE
Q 015306 149 YAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
+|+|+|+ |++.|+++....+ ..++++++++|++++++++++||+|++. +.+++..+...++++++++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~---~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG---YGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec---chhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999 9999987765322 2346999999999999888899999984 33555567889999999999999998
Q ss_pred Ecc
Q 015306 226 LPD 228 (409)
Q Consensus 226 ip~ 228 (409)
+..
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 743
No 185
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=3.6e-08 Score=85.28 Aligned_cols=107 Identities=23% Similarity=0.364 Sum_probs=85.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
...+.|..+.....|++|||+|+|+|..++.+++.|++.|++.|+.+ ....++-|+..|+.. |.+...|... .+
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~ 140 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SP 140 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CC
Confidence 45566777778889999999999999999999999999999999999 999999999999975 8888888766 34
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeE
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (409)
..||+|+. +..+.+...-..++. +.+.|+..|.
T Consensus 141 ~~~Dl~La---gDlfy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 141 PAFDLLLA---GDLFYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred cceeEEEe---eceecCchHHHHHHH-HHHHHHhCCC
Confidence 88999998 444555555566666 4455544443
No 186
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.74 E-value=1.5e-07 Score=87.09 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=81.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..+.......+..+|+|||+|+|.++..+++ .+..+++.+|.-++++.+++ .++|+++.+|+. .++| . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc-c-c
Confidence 3444445566778999999999999999998 67779999999558888877 478999999999 5666 4 9
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC--eEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD--GIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg--G~lip~ 228 (409)
|+++...+.+.. .......+|+.+++.|+|| |+|+..
T Consensus 160 D~~~l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 160 DVYLLRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred cceeeehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 999987654433 3455678999999999999 998743
No 187
>PLN02823 spermine synthase
Probab=98.74 E-value=6.3e-08 Score=93.33 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEEE
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~DvVvs 195 (409)
.+++||.||+|.|.++..+++. +..+|+.||+++ +++.|++.+..++ + +.+++++.+|...+- ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999999884 577999999999 9999999886432 2 468999999998864 23478999999
Q ss_pred ecccccccChh---HHHHHHH-HHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFEN---MLNTVLY-ARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~---~~~~~l~-~~~~~LkpgG~lip~ 228 (409)
+.....-.... .-..+++ .+.+.|+|||+++.+
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 74321100000 1245676 788999999998754
No 188
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=7.2e-08 Score=95.90 Aligned_cols=116 Identities=24% Similarity=0.183 Sum_probs=89.9
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
...++.+.....+.....++.+|||+-||.|.+++.+|+. ..+|+|+|+++ +++.|+++++.|++.| ++|+.+++++
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~ 352 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHH
Confidence 3345566666666666678899999999999999999976 66999999999 9999999999999987 9999999999
Q ss_pred ccCC---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 183 IELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 183 ~~~~---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... ...+|+|+.++.-.++ -+.+++.+. -++|..+++.
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCC-----CHHHHHHHH-hcCCCcEEEE
Confidence 8643 2578999998864433 235555553 3456655553
No 189
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=4.1e-08 Score=87.99 Aligned_cols=95 Identities=25% Similarity=0.312 Sum_probs=82.4
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc-eeEEEEeccc
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK-VDIIISEWMG 199 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~DvVvs~~~~ 199 (409)
+.+++|||+|.|.-++.+|- .+..+|+-+|... -+...+......+++| ++++++.++++... .. ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccc-cccCcEEEeehc-
Confidence 68999999999999999885 5566799999999 9999999999999965 99999999998743 23 999999876
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+..+..-+..++|+||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 566778888899999999876
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.69 E-value=1.4e-07 Score=88.51 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=87.8
Q ss_pred CEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcccccccCC-CCceeEEEEec
Q 015306 124 KVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIELP-VTKVDIIISEW 197 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~-~~~~DvVvs~~ 197 (409)
++||-||.|.|..+..+++.+ ..+++.||+++ +++.+++.+.... . +.|++++..|..++--. .++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999964 78999999999 9999999886543 2 47899999999887532 25899999975
Q ss_pred ccccccChhH-HHHHHHHHHhcccCCeEEEccCCceEEEE
Q 015306 198 MGYFLLFENM-LNTVLYARDKWLVDDGIVLPDKASLYLTA 236 (409)
Q Consensus 198 ~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~~~~~~~~~ 236 (409)
.......+.. -..+++.+++.|+++|+++.+....|...
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 4332111111 26889999999999999997755555443
No 191
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.68 E-value=2.5e-07 Score=89.10 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=94.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCC----------------------------------------
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA---------------------------------------- 146 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~---------------------------------------- 146 (409)
.+.+..+|.......++..++|.=||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 4567777777778888889999999999999999986521
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccc--cChhHHHHH----HHHHHhcc
Q 015306 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL--LFENMLNTV----LYARDKWL 219 (409)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l--~~~~~~~~~----l~~~~~~L 219 (409)
.++|+|+++ +++.|+.|+...|+.+.|+|.++|+.++..+.+.+|+||||+ .|.. ..+..+..+ ...+++.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP-PYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP-PYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC-CcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 378999999 999999999999999999999999999876557999999997 3433 333334434 34455666
Q ss_pred cCCeEEEccC
Q 015306 220 VDDGIVLPDK 229 (409)
Q Consensus 220 kpgG~lip~~ 229 (409)
+--+..|+.+
T Consensus 335 ~~ws~~v~tt 344 (381)
T COG0116 335 AGWSRYVFTT 344 (381)
T ss_pred cCCceEEEEc
Confidence 6656666443
No 192
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.67 E-value=1.3e-07 Score=92.47 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 123 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
+.+|||+.||+|..++.++.. |+.+|+++|+++ +++.+++|++.|++. +++++++|+..+... ..+||+|..++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 468999999999999999986 788999999999 999999999999886 489999999876422 357999998874
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+....+++.+.+.+++||.+...
T Consensus 124 -------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -------CCcHHHHHHHHHhcccCCEEEEE
Confidence 22345777777889999998754
No 193
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.67 E-value=2.1e-07 Score=84.61 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=83.3
Q ss_pred CEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~DvVvs~~~ 198 (409)
..+||||||.|.+...+|+ .+...++|||+.. .+..|.+.+.+.++. ++.+++.|+..+. +++++.|-|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 6899999999999999888 6778999999999 999999999999986 5999999998864 34459999997643
Q ss_pred cccc--cChh---HHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFL--LFEN---MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l--~~~~---~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+-.. .|.. ..+.+++.+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 3221 1110 2368889999999999998854
No 194
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.66 E-value=1.2e-07 Score=86.40 Aligned_cols=94 Identities=32% Similarity=0.319 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
...++||||+|.|..+..++.. .++|++.|.|+ |....++ .|+ +++ +..++.-.+.+||+|.| ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~----~vl--~~~~w~~~~~~fDvIsc---LN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF----TVL--DIDDWQQTDFKFDVISC---LN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC----eEE--ehhhhhccCCceEEEee---hh
Confidence 4568999999999999999886 67999999999 8665544 443 333 22233333468999998 34
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+..-..+..+++.+++.|+|+|++|.+-
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 46666678899999999999999988543
No 195
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.66 E-value=2.4e-07 Score=93.20 Aligned_cols=113 Identities=15% Similarity=0.024 Sum_probs=88.0
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
...+|.+|||++||.|.-+..++.. +...|+++|+++ .++.+++++...|+.+ +.+.+.|...+. ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEE
Confidence 4578999999999999999999884 345899999999 9999999999999965 889999988753 1136799999
Q ss_pred Eecccccc----cChh---------------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 195 SEWMGYFL----LFEN---------------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 195 s~~~~~~l----~~~~---------------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
.+...+.. .++. ....++....++|||||++|-+++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 76543211 1111 11577888889999999999877763
No 196
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.65 E-value=7.5e-08 Score=82.58 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=56.7
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCc-eeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTK-VDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-~DvVvs~~~ 198 (409)
.+|+|+.||.|..++.+|+. ..+|+|||+++ .++.|+.|++-.|+.++|+++++|+.++.. .... +|+|+++|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 37999999999999999998 55999999999 999999999999999999999999988742 2122 899999864
No 197
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.65 E-value=1.4e-07 Score=88.15 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=65.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.+.+.....++.+|||||||+|.++..+++.+. +|+++|+++ +++.+++++.. ..+++++++|+.+++++ ++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--Hc
Confidence 3344445567789999999999999999999864 799999999 99999887643 24699999999987764 56
Q ss_pred e---EEEEecc
Q 015306 191 D---IIISEWM 198 (409)
Q Consensus 191 D---vVvs~~~ 198 (409)
| +|++++.
T Consensus 93 d~~~~vvsNlP 103 (253)
T TIGR00755 93 PKQLKVVSNLP 103 (253)
T ss_pred CCcceEEEcCC
Confidence 6 8888763
No 198
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=1.4e-07 Score=85.56 Aligned_cols=86 Identities=30% Similarity=0.351 Sum_probs=75.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.....|.......++..|||||.|||.++..+.+.|+ +|+|+|+++ |+....+++.....+++.+++++|+...++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--
Confidence 4455666667889999999999999999999999955 999999999 999999998777777899999999988765
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
..||++|++.
T Consensus 122 P~fd~cVsNl 131 (315)
T KOG0820|consen 122 PRFDGCVSNL 131 (315)
T ss_pred cccceeeccC
Confidence 5799999985
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.5e-07 Score=86.55 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=71.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC-
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT- 188 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~- 188 (409)
.+.|.......++..|||||+|.|.++..+++.+. +|+|+|+++ ++...++.+. ..++++++++|+....++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc
Confidence 44455556677789999999999999999999955 799999999 9999998875 22569999999999988722
Q ss_pred ceeEEEEecccccc
Q 015306 189 KVDIIISEWMGYFL 202 (409)
Q Consensus 189 ~~DvVvs~~~~~~l 202 (409)
.++.||++. .|.+
T Consensus 95 ~~~~vVaNl-PY~I 107 (259)
T COG0030 95 QPYKVVANL-PYNI 107 (259)
T ss_pred CCCEEEEcC-CCcc
Confidence 789999997 4544
No 200
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.64 E-value=6.1e-07 Score=82.77 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C--CCCceeE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L--PVTKVDI 192 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~~Dv 192 (409)
....-+||||.||.|...+.+.. .+ ..+|...|.|+ .++..++.++..|+.+.++|.++|+.+.. + -....++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 34567999999999988887776 44 36899999999 99999999999999998899999998753 1 1366899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++...+...+.....+...+..+.+.+.|||++|..
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 998776555555566777899999999999999954
No 201
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.62 E-value=2.4e-07 Score=82.03 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred EEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--------CCCceeEEE
Q 015306 125 VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTKVDIII 194 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~DvVv 194 (409)
+|||||||||..+..+|+ .+.-+..-.|.++ .....+..+...++++...-+..|+..... ..++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999998 6667888899999 777777777778877656667777766532 235899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+..|.+.. .......++....++|++||.++.
T Consensus 108 ~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 108 CINMLHIS-PWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEE
Confidence 97665544 345667899999999999999884
No 202
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.60 E-value=2.5e-07 Score=90.30 Aligned_cols=93 Identities=28% Similarity=0.281 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
++.+.+.+.+.....++ .|||+-||.|.+++.+|+. +++|+|||.++ +++.|++++..|++.+ ++|+.++++++.
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCC
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhH
Confidence 44555555555555555 8999999999999999997 56999999999 9999999999999965 999998876642
Q ss_pred ---------------CCCCceeEEEEecccccc
Q 015306 185 ---------------LPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 185 ---------------~~~~~~DvVvs~~~~~~l 202 (409)
+....+|+|+.+|+-.++
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 112368999998865444
No 203
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.58 E-value=4.7e-07 Score=96.28 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=87.1
Q ss_pred HHHHHHHHHhccCC-CCCCEEEEEcCCCChHHHHHHHcC-----------------------------------------
Q 015306 107 TKSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG----------------------------------------- 144 (409)
Q Consensus 107 ~~~~~~~l~~~~~~-~~~~~VLDlGcG~G~l~~~la~~g----------------------------------------- 144 (409)
.+.+..+|...... .++..++|.+||+|.+.+.+|...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34566666655554 567899999999999998887621
Q ss_pred --CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEecccccc--cChhHHHHHHHHHHh
Q 015306 145 --AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFL--LFENMLNTVLYARDK 217 (409)
Q Consensus 145 --~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~DvVvs~~~~~~l--~~~~~~~~~l~~~~~ 217 (409)
..+++|+|+++ +++.|++|+..+|+.+.+++.++|+.++..+ .+++|+|++++. |.. .....+..+...+..
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP-Yg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP-YGERLGEEPALIALYSQLGR 332 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC-CcCccCchHHHHHHHHHHHH
Confidence 12699999999 9999999999999988899999999988654 247999999973 432 223445555555444
Q ss_pred ccc---CCeEE
Q 015306 218 WLV---DDGIV 225 (409)
Q Consensus 218 ~Lk---pgG~l 225 (409)
.|+ +|+.+
T Consensus 333 ~lk~~~~g~~~ 343 (702)
T PRK11783 333 RLKQQFGGWNA 343 (702)
T ss_pred HHHHhCCCCeE
Confidence 444 67654
No 204
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.58 E-value=2.1e-07 Score=82.97 Aligned_cols=107 Identities=13% Similarity=0.206 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCC----hHHHHHHHc---CC---CEEEEEecHH-HHHHHHHHHH--------------H-----c----
Q 015306 122 KDKVVLDVGAGTG----ILSLFCAKA---GA---AHVYAVECSQ-MANMAKQIVE--------------A-----N---- 167 (409)
Q Consensus 122 ~~~~VLDlGcG~G----~l~~~la~~---g~---~~V~~vD~s~-~~~~a~~~~~--------------~-----~---- 167 (409)
+..+|+..||++| .+++.+.+. .. -+++|+|+|+ +++.|++-.- . .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4579999999999 566666662 12 3899999999 9999976210 0 0
Q ss_pred ----CCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 168 ----GFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 168 ----~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+.++|+|.+.|+.+...+.+.||+|+|..+.-++ .......+++.+.+.|+|||.++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 11257999999998833345899999997543333 44566899999999999999998553
No 205
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.55 E-value=5.4e-07 Score=83.48 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCC---CCcEEEEEcccccccCC-CC-ceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIELP-VT-KVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~~~-~~-~~DvV 193 (409)
..+++||-||.|.|..+..+.+.. ..+|+.||+++ +++.|++.+..... +.+++++.+|...+--. .+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 367899999999999999999865 67999999999 99999998775432 36899999999876422 24 89999
Q ss_pred EEecccccccChh-HHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+.......... .-..+++.+.+.|+|||+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 9976432111111 1257889999999999998843
No 206
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.54 E-value=7.7e-07 Score=75.12 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=83.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--- 184 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 184 (409)
.+.+........|.-|||+|.|||.++..+.++| ...++++|.|+ ......+... .+.++++|+.++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence 3444555666788899999999999999999987 44899999999 8888777653 2679999998876
Q ss_pred --CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 --~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....||.|+|....- .......-++++.+...|.+||.++-
T Consensus 111 ~e~~gq~~D~viS~lPll-~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 111 GEHKGQFFDSVISGLPLL-NFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hhcCCCeeeeEEeccccc-cCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 3357899999963211 11222345778888889999999873
No 207
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=6.1e-08 Score=85.64 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=83.4
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
...++|||||.|.++..+...|..+++-+|.|- |++.++.. +.+++ .+....+|-+.+++.+.++|+|++++-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSls--- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLS--- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhh---
Confidence 457999999999999999998899999999999 99988763 33443 267788899999998899999999754
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++..+++..+..++..|||+|.+|-
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchh
Confidence 55567788888999999999999883
No 208
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.51 E-value=4.2e-07 Score=85.63 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCC----hHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHH------------------H--------
Q 015306 123 DKVVLDVGAGTG----ILSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVE------------------A-------- 166 (409)
Q Consensus 123 ~~~VLDlGcG~G----~l~~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~------------------~-------- 166 (409)
..+|+..||+|| .+++.+.+. + ..+|+|+|+|+ +++.|++-.- .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999 667777663 2 24799999999 9999987420 0
Q ss_pred ----cCCCCcEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 167 ----NGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 167 ----~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+.+.|+|.+.|+.+.+++ .+.||+|+|..+..++ .......++..+.+.|+|||+++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01336688888998875433 5789999996543333 34567899999999999999988554
No 209
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.49 E-value=2.2e-07 Score=81.94 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
...+.++|. ...++.+|.|+|||.+.++..+. . ..+|...|+-. .+ + .++.+|+..+|++
T Consensus 60 vd~iI~~l~---~~~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva----------~n---~--~Vtacdia~vPL~ 119 (219)
T PF05148_consen 60 VDVIIEWLK---KRPKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVA----------PN---P--RVTACDIANVPLE 119 (219)
T ss_dssp HHHHHHHHC---TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS---T--TEEES-TTS-S--
T ss_pred HHHHHHHHH---hcCCCEEEEECCCchHHHHHhcc-c-CceEEEeeccC----------CC---C--CEEEecCccCcCC
Confidence 344555554 23456799999999999985543 2 23799999854 11 2 3677999999999
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++++|++|+-.. |.+ .++..++.+..|+|||||.+...
T Consensus 120 ~~svDv~VfcLS---LMG-Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 120 DESVDVAVFCLS---LMG-TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp TT-EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceeEEEEEhh---hhC-CCcHHHHHHHHheeccCcEEEEE
Confidence 999999998431 222 46778999999999999998743
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=98.48 E-value=7.4e-07 Score=82.71 Aligned_cols=102 Identities=20% Similarity=0.069 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...++||-||.|.|..+..+++... +|+-||+++ +++.+++.+... ++ +.|++++.. +. ....++||+||.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 4568999999999999999999864 999999999 999999965532 12 356777752 21 1123789999987
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccCCceEE
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (409)
.. ..+.+.+.+++.|+|||+++.+..+.+.
T Consensus 147 s~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 147 QE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred CC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 42 1246778899999999999987766554
No 211
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.5e-06 Score=79.12 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=84.0
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CC
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VT 188 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~ 188 (409)
|...+...||.+|||-|+|+|.++..+++. +-.+++..|+.+ ..+.|++.++..++++++++.+.|+...-+. ..
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 444567899999999999999999999994 467999999999 9999999999999999999999999887654 46
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCe-EEE
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 226 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~li 226 (409)
.+|.|+.+++ .+-..+-.+.+.||.+| +++
T Consensus 177 ~aDaVFLDlP--------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 177 KADAVFLDLP--------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ccceEEEcCC--------ChhhhhhhhHHHhhhcCceEE
Confidence 8999998653 22222333445787666 444
No 212
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.7e-06 Score=75.78 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHH-cCCC--EEEEEecHH-HHHHHHHHHHHcC--------C-CCcEEEEEcccccccC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAA--HVYAVECSQ-MANMAKQIVEANG--------F-SNVITVLKGKIEEIEL 185 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~-~g~~--~V~~vD~s~-~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~~~ 185 (409)
.+.||.+.||+|+|+|.|+-++++ -|+. .++|||.-+ +++.+++++...- + ..++.++.+|......
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 368999999999999999999997 3432 349999999 9999999987643 1 1457889999998887
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+..+||.|.+-. ....+.+++...|++||.++
T Consensus 159 e~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 159 EQAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred ccCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 778999999732 11233344456677777655
No 213
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=1.7e-06 Score=77.11 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCce
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (409)
...++++||||.=||.-++..|.+ + ..+|+++|+++ ..+.+.+..+..|...+|+++++++.+.- .+.+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 467889999999999888888874 2 55999999999 99999999999999999999999987632 235889
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (409)
|+++.+. ...........+.++||+||+++....-.+.
T Consensus 151 DfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 9999742 1233346777888999999999976544333
No 214
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.43 E-value=2e-06 Score=77.21 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=64.5
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH-------HcCC-CCcEEEEEcccccccCC
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEIELP 186 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~~~~ 186 (409)
...+.++.+.+|||||.|...+.+|. .+..+++|||+.+ ..+.|+.... ..|. ..++++.++|+.+.+..
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 35577889999999999999887776 6888899999999 8877765433 2333 25688999998765421
Q ss_pred ---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 187 ---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
-...|+|+++.. ...+. +...+......||+|.++|
T Consensus 117 ~~~~s~AdvVf~Nn~---~F~~~-l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 117 KDIWSDADVVFVNNT---CFDPD-LNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHGHC-SEEEE--T---TT-HH-HHHHHHHHHTTS-TT-EEE
T ss_pred hhhhcCCCEEEEecc---ccCHH-HHHHHHHHHhcCCCCCEEE
Confidence 146899999753 33434 4344466667889999887
No 215
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.41 E-value=3.4e-06 Score=78.37 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--------------------------------
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------------------------------- 167 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------------------------------- 167 (409)
....+||--|||.|.++..+|..|. .+.|.|.|- |+-...-.+...
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3457999999999999999999988 899999999 876555443320
Q ss_pred -------CCCCcEEEEEcccccccCCC---CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 168 -------GFSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 168 -------~~~~~i~~~~~d~~~~~~~~---~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
....++....+|+.++-.+. ++||+|++. +++....++-..++.+.++|||||..|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 01234666667777765444 699999984 556666778899999999999999877
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.37 E-value=2.5e-06 Score=87.23 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~ 196 (409)
..+..+||||||.|.+...+|+ .+...++|+|+.. .+..+.+.+...++.| +.++..|+..+. ++++++|-|+..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEE
Confidence 3467999999999999998888 5777999999999 7777777778888865 888988886443 566889999986
Q ss_pred ccccccc--Chh---HHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL--FEN---MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~--~~~---~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+-..- |.. .-+.++..+.++|||||.+...
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 5433221 111 1268889999999999998754
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.36 E-value=2.7e-06 Score=80.91 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=67.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
..+|.++|||||++|.++..+++.|+ +|+|||..++.... ... .+|+.+..|...+..+.+.+|+++|++.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MDT---GQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hCC---CCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999999988 99999987743322 112 4688888888776543578999999875
Q ss_pred ccccChhHHHHHHHHHHhcccCC
Q 015306 200 YFLLFENMLNTVLYARDKWLVDD 222 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkpg 222 (409)
..+..+.+-+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 34556667777788665
No 218
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=7.8e-06 Score=79.88 Aligned_cols=115 Identities=21% Similarity=0.115 Sum_probs=88.9
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC---CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (409)
+...+|.+|||++++.|.=+..+++.. ...|+|+|.++ -++..++++...|+.+ +.+++.|...+. ...++|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcC
Confidence 567899999999999999999888853 24679999999 9999999999999977 788888876543 222369
Q ss_pred eEEEEecccccccC------------h-------hHHHHHHHHHHhcccCCeEEEccCCceE
Q 015306 191 DIIISEWMGYFLLF------------E-------NMLNTVLYARDKWLVDDGIVLPDKASLY 233 (409)
Q Consensus 191 DvVvs~~~~~~l~~------------~-------~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (409)
|.|+.+...+...- . ....+++....++|||||.++-+++++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 99999754332210 0 1125788888999999999998877643
No 219
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=3e-06 Score=76.05 Aligned_cols=107 Identities=24% Similarity=0.294 Sum_probs=78.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE-EEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI-TVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~ 186 (409)
.+..++....-..++++|||||+.||.++..+.+.|+++|+|+|..- .+..--++ +.++ .+-..+++.+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 55666666666789999999999999999999999999999999987 55443221 1233 3445566655422
Q ss_pred --CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 --~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+..|+++++.. + -.+..++..+..+++|+|.+++
T Consensus 140 ~~~~~~d~~v~DvS--F----ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVS--F----ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEee--h----hhHHHHHHHHHHhcCCCceEEE
Confidence 258899999742 1 2456788888899999998773
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.31 E-value=1.1e-06 Score=77.67 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=64.3
Q ss_pred HHHHHHhccCCC--CCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 110 YQNVIYQNKFLF--KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 110 ~~~~l~~~~~~~--~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
+.+.+.+..... ++.+||||||++|.++..+++.+ ..+|+|+|+.++ ... ..+.++++|+.+..
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhH
Confidence 344444433233 34899999999999999999987 679999999873 111 23777777776532
Q ss_pred -------CC--CCceeEEEEecccccccC----h----hHHHHHHHHHHhcccCCeEEE
Q 015306 185 -------LP--VTKVDIIISEWMGYFLLF----E----NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 -------~~--~~~~DvVvs~~~~~~l~~----~----~~~~~~l~~~~~~LkpgG~li 226 (409)
++ .+++|+|+|+........ + ......+.-+..+|+|||.+|
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 11 268999999863222211 1 111233334457899999877
No 221
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.30 E-value=1.6e-06 Score=78.22 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=70.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
..+.+.|.. ......|.|+|||-+.++. .. ...|+..|+-+ -+-.++.+|+.++++++
T Consensus 169 d~ii~~ik~---r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 169 DVIIRKIKR---RPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLED 226 (325)
T ss_pred HHHHHHHHh---CcCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCcc
Confidence 344455543 2456789999999998765 22 34799999854 12467889999999999
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+++|++|+-+ + +.+ .++..++.++.|+|++||.+....
T Consensus 227 ~svDvaV~CL--S-LMg-tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 227 ESVDVAVFCL--S-LMG-TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CcccEEEeeH--h-hhc-ccHHHHHHHHHHHhccCceEEEEe
Confidence 9999999732 1 222 467789999999999999876443
No 222
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=5.3e-06 Score=73.54 Aligned_cols=102 Identities=25% Similarity=0.228 Sum_probs=71.0
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (409)
..+..-+.++.+|+|||+-.|.++..+++. |. ..|+|||+.||- .. ..|.++++|+++-+
T Consensus 37 ~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~-~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 37 NEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PI-PGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred HHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cC-CCceEEeeeccCccHHHHHHH
Confidence 334445677899999999999999999994 32 359999998821 12 23999999998864
Q ss_pred -CCCCceeEEEEecccccccC--------hhHHHHHHHHHHhcccCCeEEE
Q 015306 185 -LPVTKVDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~li 226 (409)
++...+|+|+|++....-.+ ......+++-...+|+|||.++
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 33456899999865421111 1122344555668999999987
No 223
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.27 E-value=9.6e-07 Score=77.80 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs~ 196 (409)
....|+|.-||.|.-++..|..|. .|++||+++ -+..|+.+++-.|++++|+|+++|+.++. +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 567899999999999988888755 899999999 99999999999999999999999998863 444568888876
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeE
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (409)
+. ..+.+-+..-+..+...++|.|.
T Consensus 173 pp---wggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PP---WGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CC---CCCcchhhhhhhhhhhhcchhHH
Confidence 53 12223333333344455666543
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.25 E-value=7.8e-06 Score=73.36 Aligned_cols=96 Identities=27% Similarity=0.346 Sum_probs=69.0
Q ss_pred EEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccccc
Q 015306 126 VLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~ 203 (409)
|.||||--|.+++.|.+.| +.+++++|+++ -++.|++++...++.++|+++.+|-.+.-.+.+.+|.||...||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 6899999999999999987 56899999999 999999999999999999999999766433323489999876643
Q ss_pred ChhHHHHHHHHHHhcccCCeEEE
Q 015306 204 FENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+..++.+....++....+|
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEE
T ss_pred --HHHHHHHHhhHHHhccCCeEE
Confidence 345677776666665444444
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.24 E-value=6.5e-06 Score=79.25 Aligned_cols=113 Identities=20% Similarity=0.136 Sum_probs=73.2
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcccccc
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEI 183 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~ 183 (409)
+.+.....++.+|||.+||+|.+...+.+. ...+++|+|+++ ++..|+-++.-.+.... ..+..+|....
T Consensus 38 ~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~ 117 (311)
T PF02384_consen 38 MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN 117 (311)
T ss_dssp HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS
T ss_pred HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc
Confidence 333345567789999999999998887762 456999999999 99999888776665432 45788887654
Q ss_pred cCC--CCceeEEEEecccccc--cCh----------------hHHHHHHHHHHhcccCCeEEE
Q 015306 184 ELP--VTKVDIIISEWMGYFL--LFE----------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 184 ~~~--~~~~DvVvs~~~~~~l--~~~----------------~~~~~~l~~~~~~LkpgG~li 226 (409)
+.. ..+||+|+++++.... ... ..--.++..+.+.|++||++.
T Consensus 118 ~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 118 DKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp HSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 432 4789999999743222 000 011246777789999999854
No 226
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.24 E-value=3.8e-06 Score=79.39 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC--Cce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV--TKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~--~~~ 190 (409)
....++..+||.+||.|..+..+++.. ..+|+|+|.++ +++.|++.+.. .++++++++++.++. ++. .++
T Consensus 15 L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 15 LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 445678899999999999999999963 46999999999 99999988754 367999999999874 222 279
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|.|++++
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999864
No 227
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.24 E-value=8.6e-07 Score=87.59 Aligned_cols=119 Identities=15% Similarity=0.239 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhccCC--CCC--CEEEEEcCCCChHHHHHHHcCCCEEEEEe---cHH-HHHHHHHHHHHcCCCCcEEEEE
Q 015306 106 RTKSYQNVIYQNKFL--FKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVE---CSQ-MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 106 r~~~~~~~l~~~~~~--~~~--~~VLDlGcG~G~l~~~la~~g~~~V~~vD---~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
....|.+.|.+.... ..+ .++||+|||+|.++..+...+. .+..+- ..+ .+..|. +.|++..+. .
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfal----eRGvpa~~~--~ 169 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFAL----ERGVPAMIG--V 169 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhh----hcCcchhhh--h
Confidence 345677777665544 333 4799999999999999999865 233332 223 344433 345543221 2
Q ss_pred cccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceE
Q 015306 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (409)
Q Consensus 178 ~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (409)
.-...++++.+.||+|.|.-.. ......-..++-++.|+|+|||+++-+....+
T Consensus 170 ~~s~rLPfp~~~fDmvHcsrc~--i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 170 LGSQRLPFPSNAFDMVHCSRCL--IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hccccccCCccchhhhhccccc--ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 2345688889999999995221 11111113467788999999999998777666
No 228
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.22 E-value=6.6e-06 Score=76.59 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCC----hHHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHH-----cC-----------------
Q 015306 122 KDKVVLDVGAGTG----ILSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA-----NG----------------- 168 (409)
Q Consensus 122 ~~~~VLDlGcG~G----~l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~~~-----~~----------------- 168 (409)
..-+|+-+||+|| .+++.+.+.+ .-+|+|+|+|. +++.|+.-.-. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4679999999999 6777777743 35899999999 99998753211 11
Q ss_pred ------CCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 169 ------FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+...|.|...|+.+.....+.||+|+|..+.-++ .+.....++...+..|+|||.++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1245777777776666233789999996443333 3456678999999999999998854
No 229
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.21 E-value=8.7e-06 Score=76.35 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=67.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (409)
..+.|.+.....++..|||||+|.|.++..+++.+ ++|+++|.++ +++..++.+.. ..+++++.+|+..+..+.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHHh
Confidence 33444444455688999999999999999999987 7999999999 99999887652 356999999999987663
Q ss_pred --CceeEEEEecc
Q 015306 188 --TKVDIIISEWM 198 (409)
Q Consensus 188 --~~~DvVvs~~~ 198 (409)
.....|+++..
T Consensus 94 ~~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 LKNQPLLVVGNLP 106 (262)
T ss_dssp CSSSEEEEEEEET
T ss_pred hcCCceEEEEEec
Confidence 46788888853
No 230
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2.1e-06 Score=84.77 Aligned_cols=78 Identities=31% Similarity=0.359 Sum_probs=68.0
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
....+.+...+........++.+||+.||||.+++.+|+. +++|+|||+++ .++.|++++..||+++ .+|+++.+++
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~ 442 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED 442 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh
Confidence 3445566677777788888999999999999999999885 78999999999 9999999999999976 9999997777
Q ss_pred c
Q 015306 183 I 183 (409)
Q Consensus 183 ~ 183 (409)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 5
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.14 E-value=3.4e-05 Score=65.20 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-----cCCCEEEEEecHH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCcee
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-----AGAAHVYAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-----~g~~~V~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
..+..+|+|+|||.|.++..++. ....+|++||.++ .++.+.+.....+ +..++.+..+++.+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 36778999999999999999999 5566999999999 9999999888777 55567788777765533 36788
Q ss_pred EEEE
Q 015306 192 IIIS 195 (409)
Q Consensus 192 vVvs 195 (409)
++++
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 8886
No 232
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.12 E-value=4.9e-06 Score=80.85 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=93.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
....++..++|+|||.|.....++..+...++|++.++ .+..+.......++.++..++.+|+-..++++..||.+-+
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~- 184 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF- 184 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE-
Confidence 34567779999999999999999998777999999999 8888888887778888888899999999999999999998
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.....+.+....++.++.+.++|||.++-.
T Consensus 185 --ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 --LEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred --EeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 344666688889999999999999998843
No 233
>PRK10742 putative methyltransferase; Provisional
Probab=98.12 E-value=2e-05 Score=71.92 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=68.2
Q ss_pred HHhccCCCCCC--EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc------C--CCCcEEEEEccccc
Q 015306 114 IYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN------G--FSNVITVLKGKIEE 182 (409)
Q Consensus 114 l~~~~~~~~~~--~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~------~--~~~~i~~~~~d~~~ 182 (409)
|.+...+.++. +|||+-+|+|..++.++..|+. |+++|-++ +....++.+... + +..+++++++|..+
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 33445556766 9999999999999999999885 99999999 999998888874 2 23569999999988
Q ss_pred ccCC-CCceeEEEEeccc
Q 015306 183 IELP-VTKVDIIISEWMG 199 (409)
Q Consensus 183 ~~~~-~~~~DvVvs~~~~ 199 (409)
+--. ..+||+|+.++|.
T Consensus 157 ~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHhhCCCCCcEEEECCCC
Confidence 6421 2479999999874
No 234
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.11 E-value=1.9e-05 Score=74.74 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHH--HH---cCC-CCcEEEEEcccccccC-CCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV--EA---NGF-SNVITVLKGKIEEIEL-PVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~--~~---~~~-~~~i~~~~~d~~~~~~-~~~~~D 191 (409)
..-.+||-+|.|.|.....+.+.+ ..+++-||.+| |++.++++. .. +.+ +.+++++..|+.++-- ....||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 344689999999999999999986 88999999999 999998433 22 122 3689999999988752 246899
Q ss_pred EEEEecccccccChh--HHHHHHHHHHhcccCCeEEEccCCceEEEE
Q 015306 192 IIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLTA 236 (409)
Q Consensus 192 vVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~~~~~~~~~ 236 (409)
+||.+..+.--...+ .-..+..-+.+.|+++|.++.+..+.|..|
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence 999875432111111 113566667899999999998766655443
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.08 E-value=2.2e-05 Score=74.40 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=87.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+|||+++|.|.=+..+++. + ...|+|+|+++ -+...++++...|+.+ +.++..|..... .....||.
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccch
Confidence 34678899999999999999988883 3 56999999999 9999999999999865 788878887763 23356999
Q ss_pred EEEeccccccc----Ch--------h-------HHHHHHHHHHhcc----cCCeEEEccCCce
Q 015306 193 IISEWMGYFLL----FE--------N-------MLNTVLYARDKWL----VDDGIVLPDKASL 232 (409)
Q Consensus 193 Vvs~~~~~~l~----~~--------~-------~~~~~l~~~~~~L----kpgG~lip~~~~~ 232 (409)
|+.+...+... +. . ....+++...+++ ||||+++-+++++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99975433221 11 0 1247788889999 9999999776653
No 236
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.05 E-value=3.2e-05 Score=72.81 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCC-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEccccccc-----CCCCceeEEE
Q 015306 123 DKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIE-----LPVTKVDIII 194 (409)
Q Consensus 123 ~~~VLDlGcG~G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~-----~~~~~~DvVv 194 (409)
..++||||||.. +..+..++...-+++|.|+++ .++.|++++..| ++.++|+++...-...- .+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 458999999986 556666663244999999999 999999999999 99999999876433221 2247899999
Q ss_pred Eecccc
Q 015306 195 SEWMGY 200 (409)
Q Consensus 195 s~~~~~ 200 (409)
|++..|
T Consensus 183 CNPPFy 188 (299)
T PF05971_consen 183 CNPPFY 188 (299)
T ss_dssp E-----
T ss_pred cCCccc
Confidence 998533
No 237
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.00 E-value=0.00012 Score=65.47 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (409)
..+.+|.+||-||+.+|.....++. .| ...|+|||.|+ ..+..-..++.. .+|-.+-.|+.... .--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 4678899999999999999999988 55 66999999999 766555555544 45888888887643 1136899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++.. ......-++..+..+||+||.++.
T Consensus 146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEE
Confidence 9999742 234556677778899999999873
No 238
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.97 E-value=6e-05 Score=66.45 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~ 197 (409)
.+|.+||.||-|-|+..-.+.++...+-+.||..+ +++..++..-.. .++|.++.+..++.. ++++.||-|+-+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec
Confidence 78999999999999999999888766778999999 988877643221 256888888888764 5678899999754
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. ...-.++..+.+.+.++|||+|++-.
T Consensus 178 y---~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 178 Y---SELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred h---hhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 2 23335666777888999999998753
No 239
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.96 E-value=2.4e-05 Score=66.09 Aligned_cols=58 Identities=33% Similarity=0.474 Sum_probs=50.3
Q ss_pred EEEEEcCCCChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
+|||+|||.|.++..+++.+. .+|+++|+++ +.+.+++++..+++.+ ++++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 489999999999999999754 3899999999 9999999999998865 88888777653
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.96 E-value=6.2e-06 Score=66.03 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=44.6
Q ss_pred EEEcCCCChHHHHHHHc----CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEecccc
Q 015306 127 LDVGAGTGILSLFCAKA----GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGY 200 (409)
Q Consensus 127 LDlGcG~G~l~~~la~~----g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~~ 200 (409)
||||+..|..+..+++. +..+++++|..+..+.+++.++..++.++++++.++..+.- ++.+++|+|+.+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888887763 22379999998844455566666677788999999997652 22479999998642
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+........+..+.+.|+|||+++...
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 122344566777889999999998654
No 241
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.90 E-value=0.00016 Score=60.75 Aligned_cols=98 Identities=26% Similarity=0.353 Sum_probs=67.0
Q ss_pred EEEEcCCCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCC-CceeEEEEeccc
Q 015306 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPV-TKVDIIISEWMG 199 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~DvVvs~~~~ 199 (409)
++|+|||+|... .++.... ..++++|.++ ++..++......+. ..+.+...+... +++.. ..+|++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLV- 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeee-
Confidence 999999999877 4444322 3899999999 88885554433211 116788888876 56664 48999943322
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..... ....+..+.+.|+|+|.++...
T Consensus 129 --~~~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 129 --LHLLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred --hhcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 11112 6778888999999999887543
No 242
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.90 E-value=5e-05 Score=78.44 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHcC---------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAG---------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P 186 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g---------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~ 186 (409)
...+|||.|||+|.+...+++.. ...++|+|+++ ++..++.++...+. ..+.+...|.....+ .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999988887632 14799999999 99999998877652 125556555433211 1
Q ss_pred CCceeEEEEecc
Q 015306 187 VTKVDIIISEWM 198 (409)
Q Consensus 187 ~~~~DvVvs~~~ 198 (409)
.++||+||++|+
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999974
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.87 E-value=0.00011 Score=68.54 Aligned_cols=105 Identities=15% Similarity=0.233 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCC-hHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHH-HcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTG-ILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G-~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.+++|+=||||.= ..++.+++ .| ...|+++|.++ +++.+++.+. ..+++.+++|+.+|..+...+-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3469999999975 44566665 34 45899999999 9999999888 5678889999999998876555789999875
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+- ......-..++..+.+.++||+.++..
T Consensus 200 alV--g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALV--GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT---S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhc--ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 321 112235678999999999999988843
No 244
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.84 E-value=0.00022 Score=67.26 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=67.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
....|.+......+.+|||+|||+|..+..+.. . ...+++++|.|+ |++.++..+............ ........+
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhccccc
Confidence 334444444556778999999999976665555 2 366899999999 999999887654321111111 111111112
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccC
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD 221 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkp 221 (409)
..+.|+|++..+..-+.. .....+++.+.+.+.+
T Consensus 100 ~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred CCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 234499998654444444 5556777777666655
No 245
>PHA01634 hypothetical protein
Probab=97.77 E-value=0.00012 Score=59.02 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..+++|+|||++-|..++.++-.|+++|+++|+++ ..+..+++++.+.+-++..-.. +++-.-+.||+.+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMD 99 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEE
Confidence 57899999999999999999999999999999999 9999999998876544332222 233334789998864
No 246
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.76 E-value=0.00013 Score=60.83 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=57.9
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEecccccccChh-------HHHHHHHHHH
Q 015306 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFEN-------MLNTVLYARD 216 (409)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~~~l~~~~-------~~~~~l~~~~ 216 (409)
+|+|+|+.+ +++.+++++...++.++++++...-+.+. .+.+++|+++.+. ||...+.. .--..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 699999999 99999999999999889999999888876 2334899999985 66543321 1234566677
Q ss_pred hcccCCeEEEc
Q 015306 217 KWLVDDGIVLP 227 (409)
Q Consensus 217 ~~LkpgG~lip 227 (409)
++|+|||+++.
T Consensus 80 ~lL~~gG~i~i 90 (140)
T PF06962_consen 80 ELLKPGGIITI 90 (140)
T ss_dssp HHEEEEEEEEE
T ss_pred HhhccCCEEEE
Confidence 89999999873
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=2.2e-05 Score=66.06 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=77.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEccccccc-
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIE- 184 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~- 184 (409)
.-.+.+......|++||++|.| +|..++++|. .+...|...|-++ .++..++....|... .++.++.-+.....
T Consensus 18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs 97 (201)
T KOG3201|consen 18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS 97 (201)
T ss_pred HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH
Confidence 3334444444567899999999 4777777777 5677999999999 999999888776332 22333332222211
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.....||+|++. .+++....-+.+++.+.++|+|.|.-+
T Consensus 98 q~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 98 QQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCccccee
Confidence 223589999994 334444566788899999999999754
No 248
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.74 E-value=0.00012 Score=67.82 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC---------------------------C
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------S 170 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~---------------------------~ 170 (409)
...+|.++||||||+-+.....|..-+.+++..|.++ ..+..++-++..+- .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3456789999999997665444443477899999998 77655554433210 0
Q ss_pred CcE-EEEEccccccc-CC-----CCceeEEEEeccccc-ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 171 NVI-TVLKGKIEEIE-LP-----VTKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 171 ~~i-~~~~~d~~~~~-~~-----~~~~DvVvs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..| .++.+|+...+ +. +++||+|++...... ..........++.+.++|||||.+|.
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 123 37778887754 22 135999998643322 23345567888889999999999984
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.73 E-value=0.00057 Score=60.87 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..+.++.||||--|.++.++.+. .+..+++.|+++ .++.|.+++..+++.+++++..+|....--.+..+|+|+...|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 35556999999999999999995 478999999999 9999999999999999999999998554334458999998766
Q ss_pred cccccChhHHHHHHHHHHhccc
Q 015306 199 GYFLLFENMLNTVLYARDKWLV 220 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lk 220 (409)
|- ..+..++++....|+
T Consensus 95 GG-----~lI~~ILee~~~~l~ 111 (226)
T COG2384 95 GG-----TLIREILEEGKEKLK 111 (226)
T ss_pred cH-----HHHHHHHHHhhhhhc
Confidence 43 344566666555554
No 250
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0002 Score=59.34 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...+..+.+|+|+|.|.+.+.+++.|....+|+|+++ .+.+++-..-..|+.....|...|+-...+.+-.+=+|+.
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg-- 146 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG-- 146 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee--
Confidence 3355568999999999999999999877899999999 9999999888889988899999999887765434434432
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+..++.+...+..-+..+..++-
T Consensus 147 ------aes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 147 ------AESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred ------hHHHHhhhHHHHHhhCcCCCeEEE
Confidence 345555666666656666666663
No 251
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00019 Score=70.94 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=80.5
Q ss_pred CCCC-EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDK-VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~-~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.+-. ++|-+|||.-.++..+-+.|...|+.+|+|+ .++.+...... . ..-+.+...|+..+.+++++||+|+...-
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCc
Confidence 3444 9999999999999999999999999999999 77766554321 1 13489999999999999999999998654
Q ss_pred cccc-cChh------HHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFL-LFEN------MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l-~~~~------~~~~~l~~~~~~LkpgG~li 226 (409)
...+ ..+. .....+..+.++|++||+.+
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 4333 2222 23456778899999999965
No 252
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.69 E-value=0.00089 Score=64.23 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=72.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEccccccc--CC----
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIE--LP---- 186 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-----g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~--~~---- 186 (409)
+.++..++|+|||+|.-+..+.+. ...++++||+|. +++.+.+.+....++. .+.-+.+|..+.. ++
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 456779999999999765555442 134799999999 9999998887444432 2444888886641 11
Q ss_pred CCceeEEEEecccccccC--hhHHHHHHHHHHh-cccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLF--ENMLNTVLYARDK-WLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~--~~~~~~~l~~~~~-~LkpgG~lip 227 (409)
.....+++. +|+.+.+ ......+++.+++ .|+|||.++.
T Consensus 154 ~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 134566665 3433333 2345578889988 9999998874
No 253
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.64 E-value=0.0003 Score=66.98 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
-...+|+|.|.|.++..+... +.+|-+++++. .+..++..+. .| |+.+.+|+..- . .+.|+|+.-|+.+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~--P~~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-T--PKGDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-C--CCcCeEEEEeeccc
Confidence 378999999999999988884 56799999998 6665555543 33 78888898776 3 45779999888666
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.. .+..++++.|...|+|||.+|.
T Consensus 249 wtD-edcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 249 WTD-EDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred CCh-HHHHHHHHHHHHhCCCCCEEEE
Confidence 654 4566999999999999998873
No 254
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.63 E-value=3.8e-05 Score=70.75 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
..+..++|+|||.|-... ..+...++++|.+. .+..+++. +......+|+..++.+..+||.+++..+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 458899999999985432 12445799999999 88887653 21257889999999988999999998887
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++........+++++.+.|+|||..+
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 888777778899999999999999876
No 255
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.0007 Score=58.55 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEc-cccccc--------CC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIE--------LP 186 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~--------~~ 186 (409)
..+.|+.+|||+||..|.++..+.+. +...|.|||+-.. ... ..++++++ |+++.. +|
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------EPP-EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------cCC-CCcccccccccCCHHHHHHHHHhCC
Confidence 44678999999999999999998883 5678999998651 111 22566666 666532 56
Q ss_pred CCceeEEEEecccccc-----cChhHH---HHHHHHHHhcccCCeEEE
Q 015306 187 VTKVDIIISEWMGYFL-----LFENML---NTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l-----~~~~~~---~~~l~~~~~~LkpgG~li 226 (409)
+.++|+|+|++....- .|...+ ..++.-....++|+|.++
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 7899999998643211 111111 122222346678999887
No 256
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.54 E-value=0.00062 Score=66.00 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=86.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (409)
+...+|.+|||.++-.|.=+..+|. .+...|+|.|.+. -+...+.++...|+.+ ..+...|..+++ ++ ++||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~-~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFP-GSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccC-cccc
Confidence 3467899999999999987777776 3466899999999 9999999999999866 566777777654 44 4899
Q ss_pred EEEEeccccc--ccC-----------------hhHHHHHHHHHHhcccCCeEEEccCCceE
Q 015306 192 IIISEWMGYF--LLF-----------------ENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (409)
Q Consensus 192 vVvs~~~~~~--l~~-----------------~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (409)
-|+.+...+. +.. .....+++.....++++||+++-+++++-
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 9998754333 211 11225667777799999999998877643
No 257
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.001 Score=58.33 Aligned_cols=102 Identities=23% Similarity=0.226 Sum_probs=75.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~Dv 192 (409)
..+.+|.+||=||+.+|...-.++. .|...+||||.|+ .....-..+... ++|--+.+|+.... .--+.+|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccE
Confidence 4678899999999999999999988 6777899999999 665555544443 45777888886543 11367999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+.+.. -....+-+...+..+||+||.++.
T Consensus 149 iy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 149 IYQDVA-----QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EEEecC-----CchHHHHHHHHHHHhcccCCeEEE
Confidence 998642 223455667778899999997663
No 258
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.45 E-value=0.0005 Score=61.29 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=65.1
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEEecccc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGY 200 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~DvVvs~~~~~ 200 (409)
.++|||||=+...... ..+.-.|++||+++ ..-.+.+.|+.+.++| .++||+|+++.+..
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6999999986543322 34444799999976 1135677888887764 67999999999888
Q ss_pred cccChhHHHHHHHHHHhcccCCeE
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~ 224 (409)
++......-.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 887777777889999999999998
No 259
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.43 E-value=3.7e-05 Score=67.26 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=69.8
Q ss_pred HHHHHHHhccC--CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~--~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.|++.+..... ...+.++||+|+|.|-++..++.. ..+|+|.|.|. |....++. +. +.+.. .++.-
T Consensus 97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y-nVl~~-----~ew~~ 165 (288)
T KOG3987|consen 97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY-NVLTE-----IEWLQ 165 (288)
T ss_pred HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC-ceeee-----hhhhh
Confidence 45555542211 234579999999999999988876 55899999999 98877653 21 11111 11211
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccC-CeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD-DGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~lip~ 228 (409)
.+-++|+|.|- ..+..--++-++++.++.+|+| +|++|.+
T Consensus 166 t~~k~dli~cl---NlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 TDVKLDLILCL---NLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred cCceeehHHHH---HHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 23579999983 2233334556888999999998 8887743
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.39 E-value=0.005 Score=55.96 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=64.1
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCc
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTK 189 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~ 189 (409)
+........|++||-||-.. ..++.++. ...++|+.+|+++ +++..++.+...|++ |+.++.|+.+--.+ .++
T Consensus 36 ~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~ 112 (243)
T PF01861_consen 36 LMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGK 112 (243)
T ss_dssp HHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-
T ss_pred HHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcC
Confidence 33335557899999999776 56666666 4477999999999 999999999999986 99999999874222 489
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCe
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG 223 (409)
||+++++|+ +-+ .-+.-++......||..|
T Consensus 113 fD~f~TDPP-yT~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 113 FDVFFTDPP-YTP---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp BSEEEE----SSH---HHHHHHHHHHHHTB-STT
T ss_pred CCEEEeCCC-CCH---HHHHHHHHHHHHHhCCCC
Confidence 999999984 322 556677777778887655
No 261
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.0023 Score=59.88 Aligned_cols=100 Identities=21% Similarity=0.196 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE---E----------------------
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV---L---------------------- 176 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~---~---------------------- 176 (409)
..+||--|||.|.|+..++..|. .+-|=|.|- |+-...-.+.....++.+++ +
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999999886 566668888 66544433322222222221 1
Q ss_pred --------------EcccccccCC---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 177 --------------KGKIEEIELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 177 --------------~~d~~~~~~~---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.||+.+.--. .+.||+|+.. +++.....+-..++.+.++|||||+.|
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEE
Confidence 1232222111 2469999974 445555677788999999999999987
No 262
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.30 E-value=0.0013 Score=64.67 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcccccccC-CCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIEL-PVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~-~~~~~DvVvs~ 196 (409)
.+.+|||.=+|+|.=++..+.. |..+|++-|+|+ +++.+++|++.|++.+ ++++.+.|+..+-. ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4568999999999888877774 678999999999 9999999999999987 79999999988652 34899999988
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++ +.+..+++...+.++.||.+..
T Consensus 129 Pf-------GSp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 129 PF-------GSPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp -S-------S--HHHHHHHHHHEEEEEEEEE
T ss_pred CC-------CCccHhHHHHHHHhhcCCEEEE
Confidence 76 3455778888889999999874
No 263
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.19 E-value=0.0027 Score=58.86 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=66.4
Q ss_pred CEEEEEcCCCC--hHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------CC-
Q 015306 124 KVVLDVGAGTG--ILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------LP- 186 (409)
Q Consensus 124 ~~VLDlGcG~G--~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~- 186 (409)
...||||||-= .....+|+ .+..+|+-||.++ .+..++..+..+.- .+..++++|+.+.. +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 57999999952 33455555 5677999999999 99999998876642 24899999998843 11
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+.++=+++... .+++..+..+..++..+...|.||..++.+..
T Consensus 149 ~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 DRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 25555665544 46666667889999999999999999986543
No 264
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.18 E-value=0.0014 Score=59.56 Aligned_cols=81 Identities=25% Similarity=0.209 Sum_probs=50.3
Q ss_pred cCCCCC--CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHH---HHHcCC-----CCcEEEEEccccccc-C
Q 015306 118 KFLFKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI---VEANGF-----SNVITVLKGKIEEIE-L 185 (409)
Q Consensus 118 ~~~~~~--~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~---~~~~~~-----~~~i~~~~~d~~~~~-~ 185 (409)
..+.++ .+|||.=+|-|.-++.+|..|+ +|+++|-|+ +....+.- ...... ..+|+++++|..++- .
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 444555 4999999999999999998887 899999999 66555433 222221 157999999998853 3
Q ss_pred CCCceeEEEEeccc
Q 015306 186 PVTKVDIIISEWMG 199 (409)
Q Consensus 186 ~~~~~DvVvs~~~~ 199 (409)
+..+||+|..++|.
T Consensus 148 ~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 148 PDNSFDVVYFDPMF 161 (234)
T ss_dssp HSS--SEEEE--S-
T ss_pred cCCCCCEEEECCCC
Confidence 45899999999884
No 265
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.11 E-value=0.0038 Score=59.28 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=64.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (409)
....++..++|.=+|.|..+..+++. +..+|+|+|.++ +++.+++.+... .+++++++++..++. .+..++
T Consensus 16 L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~v 93 (305)
T TIGR00006 16 LNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTKI 93 (305)
T ss_pred cCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCcc
Confidence 44568889999999999999999984 457999999999 999999988653 468999999998864 123579
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|.|+.+.
T Consensus 94 DgIl~DL 100 (305)
T TIGR00006 94 DGILVDL 100 (305)
T ss_pred cEEEEec
Confidence 9999864
No 266
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.06 E-value=0.005 Score=56.31 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (409)
.+.+.+.+.. ...+..+|+|||||.=-+++..... +...++|+|++. +++.....+...++. .++...|+....
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence 3344444442 3455789999999999888877663 345999999999 999999999888875 566666776654
Q ss_pred CCCCceeEEEE
Q 015306 185 LPVTKVDIIIS 195 (409)
Q Consensus 185 ~~~~~~DvVvs 195 (409)
. ....|+.+.
T Consensus 168 ~-~~~~DlaLl 177 (251)
T PF07091_consen 168 P-KEPADLALL 177 (251)
T ss_dssp T-TSEESEEEE
T ss_pred C-CCCcchhhH
Confidence 4 378999986
No 267
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.99 E-value=0.00038 Score=64.50 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCChHHH-HHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~-~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+..|.|+-+|-|.+++ .+..+|++.|+|+|.+| .++..+++++.|+..++..++.+|-+...+. ..+|-|...++
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-~~AdrVnLGLl- 271 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-LRADRVNLGLL- 271 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-ccchheeeccc-
Confidence 45799999999999999 78889999999999999 9999999999999888888888888876654 88999986544
Q ss_pred ccccChhHHHHHHHHHHhcccCCe
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG 223 (409)
...+....... ++|||.|
T Consensus 272 --PSse~~W~~A~----k~Lk~eg 289 (351)
T KOG1227|consen 272 --PSSEQGWPTAI----KALKPEG 289 (351)
T ss_pred --cccccchHHHH----HHhhhcC
Confidence 33344444333 5666644
No 268
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.95 E-value=0.0012 Score=62.38 Aligned_cols=82 Identities=24% Similarity=0.236 Sum_probs=66.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHH-------HHHHHHHHcCC-CCcEEEEEcccccccCC-C
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-------MAKQIVEANGF-SNVITVLKGKIEEIELP-V 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~-------~a~~~~~~~~~-~~~i~~~~~d~~~~~~~-~ 187 (409)
....+|+.|+|---|||.+...+|+.|+ .|+|.|++- ++. -.+.|+++.|. +.-+.++.+|...-++. .
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4568999999999999999999999988 999999998 776 34667777774 34467888888876644 5
Q ss_pred CceeEEEEeccccc
Q 015306 188 TKVDIIISEWMGYF 201 (409)
Q Consensus 188 ~~~DvVvs~~~~~~ 201 (409)
..||.|||++ .|.
T Consensus 283 ~~fDaIvcDP-PYG 295 (421)
T KOG2671|consen 283 LKFDAIVCDP-PYG 295 (421)
T ss_pred ceeeEEEeCC-Ccc
Confidence 6899999997 353
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.91 E-value=0.0061 Score=54.33 Aligned_cols=119 Identities=17% Similarity=0.257 Sum_probs=63.0
Q ss_pred hcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH----c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE
Q 015306 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (409)
Q Consensus 101 l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~----~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (409)
++....+-.|.+.|.+ .++..|+|+|.-.|.-+++.|. . +..+|+|||++- .... +..+...+.++|+
T Consensus 15 ~q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~ 88 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRIT 88 (206)
T ss_dssp SS-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEE
T ss_pred hcCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceE
Confidence 3444455566666664 3678999999999988777765 2 467999999964 2221 1223345557899
Q ss_pred EEEcccccccC--------CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 175 VLKGKIEEIEL--------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 175 ~~~~d~~~~~~--------~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++++|..+... ......+|+-+.- -.+ ...-..++....++++|+++|...
T Consensus 89 ~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~---H~~-~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 89 FIQGDSIDPEIVDQVRELASPPHPVLVILDSS---HTH-EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEES-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred EEECCCCCHHHHHHHHHhhccCCceEEEECCC---ccH-HHHHHHHHHhCccCCCCCEEEEEe
Confidence 99999977541 1234557765431 112 234455666889999999988554
No 270
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0034 Score=59.55 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=67.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC---
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP--- 186 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--- 186 (409)
..+........+++|||+|.|.|.-...+-. .+ -..++.+|.|+++...-..+..+-...+..+...|+....++
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 3444445566778899999999876554444 22 457888999994444444444443333344444555443333
Q ss_pred CCceeEEEEecccccc---cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFL---LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l---~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...|++++. .+-+ ..+..+...++.+..++.|||.++.
T Consensus 183 ad~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 183 ADLYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred cceeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 245666664 2212 2233445578888899999998774
No 271
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.79 E-value=0.0017 Score=64.66 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=67.5
Q ss_pred CEEEEEcCCCChHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
..|+|..+|.|.++..|...+. -.|+-++-...+.. +-+.|+ |-..+.-.+.+..-+.+||+|.++.+...
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc---chhccchhhccCCCCcchhheehhhhhhh
Confidence 5799999999999999887752 12333311112222 223354 44555555555544599999999876555
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
....-.+..++-++.|+|+|||.+|...
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 5555678899999999999999998654
No 272
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0036 Score=55.96 Aligned_cols=92 Identities=23% Similarity=0.254 Sum_probs=63.6
Q ss_pred CEEEEEcCCCChHHHHHHHc--C------C--CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--------C
Q 015306 124 KVVLDVGAGTGILSLFCAKA--G------A--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~--g------~--~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (409)
++|+|+++..|.++..+++. . . +++++||+.+|+. ++. |.-+++|++... |
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I~G-V~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------IEG-VIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------cCc-eEEeecccCCHhHHHHHHHHh
Confidence 58999999999999999883 1 1 1499999988432 223 777889998754 4
Q ss_pred CCCceeEEEEeccccc--ccC--hh----HHHHHHHHHHhcccCCeEEE
Q 015306 186 PVTKVDIIISEWMGYF--LLF--EN----MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~--l~~--~~----~~~~~l~~~~~~LkpgG~li 226 (409)
..++.|+|||+..... ++. |- .+...+.-...+|||||.|+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 5679999999753321 211 11 12233444568999999998
No 273
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.59 E-value=0.013 Score=53.94 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHc-----CCCCcEEEEEccccccc---CCCCc-eeE
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEAN-----GFSNVITVLKGKIEEIE---LPVTK-VDI 192 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~---~~~~~-~Dv 192 (409)
....||++|+|+|..++.+|..+...|...|....+...+.+...+ .+...+.+...+..... +-.+. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4567999999999999999986666999999877444444443322 23223444444433322 11233 999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
|++.-+ +..+...+.++..+..+|..+|.+
T Consensus 166 ilasDv---vy~~~~~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 166 ILASDV---VYEEESFEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred EEEeee---eecCCcchhHHHHHHHHHhcCCeE
Confidence 998543 445566667777777888888843
No 274
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.53 E-value=0.0018 Score=59.97 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=63.4
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHH-------HHHHH--HcCCCCcEEEEEcccccccC-CC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMA-------KQIVE--ANGFSNVITVLKGKIEEIEL-PV 187 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a-------~~~~~--~~~~~~~i~~~~~d~~~~~~-~~ 187 (409)
-...+++|||+|||+|...+.+...|+..+...|.|. .++.- ...+. .+....-..+......++.+ ..
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhc
Confidence 3568899999999999999999998888999999988 66210 00000 11111112222221112221 01
Q ss_pred C--ceeEEEEecccccccChhHHHHH-HHHHHhcccCCeEEEcc
Q 015306 188 T--KVDIIISEWMGYFLLFENMLNTV-LYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~--~~DvVvs~~~~~~l~~~~~~~~~-l~~~~~~LkpgG~lip~ 228 (409)
+ .||+|.+.-..| .+...+.+ ......+++++|+++..
T Consensus 193 ~~~~ydlIlsSetiy---~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 193 ERTHYDLILSSETIY---SIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cccchhhhhhhhhhh---CcchhhhhHhhhhhhcCCccchhhhh
Confidence 3 788888754433 33344444 55666788999987643
No 275
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.53 E-value=0.004 Score=58.79 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=54.1
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEecc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWM 198 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~DvVvs~~~ 198 (409)
+|+|+.||.|.++..+.+.|...|.++|+++ +++..+.+... .++.+|+.++... ...+|+|+..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999999999999998999999999 88887776532 2567788776532 367999998753
No 276
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.47 E-value=0.0081 Score=52.80 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcC-------CCCcEEEEEccccccc---CCCCce
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FSNVITVLKGKIEEIE---LPVTKV 190 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~-------~~~~i~~~~~d~~~~~---~~~~~~ 190 (409)
.-.+.|||||-|.+.+.++. .+..-+.|.|+-. +.++.++++.+.. + .++.+...+..... +..++-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhhhccc
Confidence 34689999999999999998 6777899999988 8888888887654 3 23566655554432 111221
Q ss_pred eEEEEecccccccCh-----hHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFE-----NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~li 226 (409)
+-.+.-...-++-.. -.-..++.+..-+|++||.++
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 111110001000000 011456777778899999887
No 277
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.017 Score=55.54 Aligned_cols=97 Identities=22% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEeccc
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 199 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~ 199 (409)
..+|||.=+|+|+=++..+. .+..+|+.-|+|+ +++.+++|+..|...+ ..+++.|+..+-.. ...||+|=.+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCC
Confidence 78999999999999988887 5666999999999 9999999999994433 66777888776433 3789999887763
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+.-++++..+.++.||.+..
T Consensus 132 -------SPaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 132 -------SPAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred -------CCchHHHHHHHHhhcCCEEEE
Confidence 344567777788888998764
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.31 E-value=0.015 Score=54.06 Aligned_cols=109 Identities=20% Similarity=0.155 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEccccccc--CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
...++||-||.|.|......+++. ...+.-+|++. .++..++.+..- |. ..+|.+.-+|-..+- ...++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 456899999999999988888853 56899999999 999998887653 22 256888888876653 335899999
Q ss_pred EEecccccccChhH-HHHHHHHHHhcccCCeEEEccC
Q 015306 194 ISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 194 vs~~~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.+.-.-....... ...+..-+.+.||+||+++...
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 98642222222221 3455667789999999988543
No 279
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.28 E-value=0.018 Score=54.40 Aligned_cols=96 Identities=24% Similarity=0.215 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-c-ccccc------CC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-K-IEEIE------LP 186 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d-~~~~~------~~ 186 (409)
.....|.+||-+|+|+ |.++...|+ .|+++|+.+|+++ .++.|++ + |... +..... + ..++. +.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhcc
Confidence 4567899999999997 899999999 7999999999999 9999998 3 3221 111111 1 11111 22
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+|+.+.-. -.+..++.....++.||.++.
T Consensus 240 ~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 240 KKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred ccCCCeEEEcc---------CchHHHHHHHHHhccCCEEEE
Confidence 35588888511 123344555678899999763
No 280
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.23 E-value=0.038 Score=56.55 Aligned_cols=113 Identities=17% Similarity=0.039 Sum_probs=76.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+.|.+.....+..+|+|..||+|.+...+++. + ...++|.|.++ ....|+.++--+|+...+....+|...-+.
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 33444344456779999999999887777763 2 25799999999 999999999888876335556665544332
Q ss_pred -----CCCceeEEEEecccccccCh----------------------hHHHHHHHHHHhcccCCeE
Q 015306 186 -----PVTKVDIIISEWMGYFLLFE----------------------NMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 186 -----~~~~~DvVvs~~~~~~l~~~----------------------~~~~~~l~~~~~~LkpgG~ 224 (409)
..++||+|++++......+. ..-..++..+...|+|||+
T Consensus 256 ~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 256 HDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred ccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 23679999998754311110 0114667778888998763
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.22 E-value=0.021 Score=55.01 Aligned_cols=92 Identities=27% Similarity=0.258 Sum_probs=62.2
Q ss_pred cCCCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-cccccCCCCceeEE
Q 015306 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEEIELPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~DvV 193 (409)
....+|++|+-+|+| .|.++..+|+ .| .+|+++|.++ -.+.|++.-. -.++... ......-.+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEE
Confidence 456789999999998 2477888888 67 5999999999 8888887632 2333332 21111112349999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.-. . ...+....+.|++||.++.
T Consensus 234 i~tv--------~--~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 234 IDTV--------G--PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred EECC--------C--hhhHHHHHHHHhcCCEEEE
Confidence 8632 1 2334455588999999873
No 282
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.11 E-value=0.012 Score=51.32 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=71.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHHH-H------HHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQM-A------NMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~~-~------~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
..+.++.+|+|+=.|.|.++..++.. | -..|++.-..+. . ...+....+... .+++.+..+...+. +.+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQ 121 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCC
Confidence 56789999999999999999999983 4 337877655441 1 111111111222 23666666666665 337
Q ss_pred ceeEEEEeccccc----ccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 189 KVDIIISEWMGYF----LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 189 ~~DvVvs~~~~~~----l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..|+++.....+. ..+......+..++.+.|||||+++...
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 7777776432222 2345567788889999999999987543
No 283
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.08 E-value=0.012 Score=57.67 Aligned_cols=94 Identities=29% Similarity=0.335 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-ccc--ccCCC-CceeE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEE--IELPV-TKVDI 192 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~--~~~~~-~~~Dv 192 (409)
..++.+|+-+|||+ |+++..+++ .|+.+|+++|.++ -++.|++.... +.+.....+ ... ..... ..+|+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCE
Confidence 34455999999998 889888888 7899999999999 99999875422 111111111 100 01222 36999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++-- .+ ....+..+.++++|||.++
T Consensus 242 vie~-~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 242 VIEA-VG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred EEEC-CC--------CHHHHHHHHHHhcCCCEEE
Confidence 9842 11 2235566668999999987
No 284
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.06 E-value=0.099 Score=46.60 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHHc---------------
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEAN--------------- 167 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~~--------------- 167 (409)
.+.+.+++.- .....+.++-|-+||+|.+.-.+.- ++ ...|+|-|+++ +++.|++|+...
T Consensus 37 sEi~qR~l~~-l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 37 SEIFQRALHY-LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp HHHHHHHHCT-SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 3445555432 2224556999999999977665554 22 45899999999 999999987421
Q ss_pred --------------------------CCCCcEEEEEccccccc-----CCCCceeEEEEecc-cccccCh-----hHHHH
Q 015306 168 --------------------------GFSNVITVLKGKIEEIE-----LPVTKVDIIISEWM-GYFLLFE-----NMLNT 210 (409)
Q Consensus 168 --------------------------~~~~~i~~~~~d~~~~~-----~~~~~~DvVvs~~~-~~~l~~~-----~~~~~ 210 (409)
|-.....+.+.|+++.. ......|+|+.+.. +....++ .-...
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ 195 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQ 195 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHH
Confidence 21223678888887732 11245799999742 2222222 24578
Q ss_pred HHHHHHhcccCCeEEE
Q 015306 211 VLYARDKWLVDDGIVL 226 (409)
Q Consensus 211 ~l~~~~~~LkpgG~li 226 (409)
++..+..+|-+++++.
T Consensus 196 ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 196 MLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHCCS-TT-EEE
T ss_pred HHHHHHhhCCCCcEEE
Confidence 8999999995455544
No 285
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.045 Score=52.71 Aligned_cols=127 Identities=16% Similarity=0.023 Sum_probs=82.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCC-----CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-----AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~-----~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (409)
+.+.++.+|||+++..|.=+..+.+... ..|+|=|.+. -+...........- ..+.+...++...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 5678999999999999988888877532 2799999998 77777766644332 23555555554433
Q ss_pred --CCCCceeEEEEeccccc--c-cCh-----------------hHHHHHHHHHHhcccCCeEEEccCCceEEEEcccccc
Q 015306 185 --LPVTKVDIIISEWMGYF--L-LFE-----------------NMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242 (409)
Q Consensus 185 --~~~~~~DvVvs~~~~~~--l-~~~-----------------~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~ 242 (409)
.....||-|+++..... . ... ...-.++....++||+||.++-++++ +.|++....
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS--LnpieNEaV 307 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS--LNPIENEAV 307 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC--CCchhhHHH
Confidence 12356999998743221 1 000 01135666677999999999988776 456665554
Q ss_pred chhhh
Q 015306 243 KDDKI 247 (409)
Q Consensus 243 ~~~~~ 247 (409)
.....
T Consensus 308 V~~~L 312 (375)
T KOG2198|consen 308 VQEAL 312 (375)
T ss_pred HHHHH
Confidence 44433
No 286
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.0034 Score=62.18 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----CCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----VTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~DvV 193 (409)
.++.+|||.=|++|+-++..|+ -|..+|++-|.++ .++..+++++.|+..+.++..+.|+..+-.. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999998888 3678999999999 9999999999999999899999998765422 4789999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
=.++.| ....+|+...+.++.||.++..
T Consensus 188 DLDPyG-------s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPYG-------SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCCC-------CccHHHHHHHHHhhcCCEEEEE
Confidence 987753 3446778888889999998754
No 287
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.87 E-value=0.038 Score=56.49 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-----------cc-
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----------IE- 184 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~- 184 (409)
..++.+|+-+|||. |..++.+|+ .|+ .|+++|.++ .++.+++. |. +++..+..+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcch
Confidence 45789999999997 888888888 687 899999999 88877762 32 221111100 00
Q ss_pred ---------CC--CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 ---------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ---------~~--~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+. ...+|+|+.-.. ......+..+.+...+.+||||+++-
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCCCCEEEE
Confidence 01 146999997321 11111232334777889999999873
No 288
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.83 E-value=0.038 Score=49.69 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCChH-HHH-HHHcCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcccccccCC-----CCceeE
Q 015306 122 KDKVVLDVGAGTGIL-SLF-CAKAGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELP-----VTKVDI 192 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l-~~~-la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~-----~~~~Dv 192 (409)
++.++||||.|.--+ .+. .-++|. +.+|.|+++ .+..|+.++..| ++...|++....=.+--|+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899999997422 211 112444 899999999 999999999999 7777787765443332222 589999
Q ss_pred EEEecc
Q 015306 193 IISEWM 198 (409)
Q Consensus 193 Vvs~~~ 198 (409)
+.|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999985
No 289
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.71 E-value=0.042 Score=52.86 Aligned_cols=65 Identities=35% Similarity=0.419 Sum_probs=53.0
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEecc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~DvVvs~~~ 198 (409)
+|+|+-||.|.+++-+.++|...|.++|+++ +++.-+.+.. ....+|+.++. ++. .+|+++..+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccC
Confidence 6999999999999999999988999999999 8888888764 67888998876 442 6999998754
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.67 E-value=0.042 Score=53.48 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=58.7
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
...++.+||-.|||. |.++..+++ .|+.+|+++|.++ .++.+++. |....+.....++.++....+.+|+|+-
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 345788999999864 666777777 6777899999999 88877652 3321111111122222212245899885
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. .+ . +..+....++|++||+++.
T Consensus 242 ~-~G----~----~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 242 V-SG----H----PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred C-CC----C----HHHHHHHHHHhhcCCEEEE
Confidence 2 11 1 1234455678999999874
No 291
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.53 E-value=0.051 Score=49.12 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=65.3
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCce
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (409)
.+++.++.+||=||+++|...-.++. -| ..-|||||.|+ .=+.+-..+.+. .+|--+..|++... .--+-+
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeE
Confidence 46789999999999999988777776 33 45799999987 433332222221 23555555665422 112468
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|+++.. .......+.-....+||+||-++.+
T Consensus 228 DvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 228 DVIFADVA-----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 88888642 1122233334456899999988754
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.15 E-value=0.038 Score=54.79 Aligned_cols=106 Identities=23% Similarity=0.184 Sum_probs=64.9
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-ccc-c-cC-CCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEE-I-EL-PVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~~~ 190 (409)
....++.+||.+|||. |.++..+|+ .|..+|++++.++ ..+.+++.. +. ..+.....+ ... + .+ ....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567889999999988 888888888 6776799999999 888887642 11 112222211 111 1 11 22469
Q ss_pred eEEEEecccc------------cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGY------------FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~------------~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+-..-+. .+...++....+....+.|+++|.++-
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 304 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI 304 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEE
Confidence 9998632100 001111224456777789999999873
No 293
>PRK11524 putative methyltransferase; Provisional
Probab=95.11 E-value=0.065 Score=50.82 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=41.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~ 166 (409)
-.+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 47899999999999999998888855 899999999 99999999854
No 294
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.92 E-value=0.056 Score=48.91 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~ 162 (409)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 47899999999999999999888855 899999999 9998864
No 295
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.82 E-value=0.26 Score=46.43 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=64.8
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCC
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (409)
.+...++...+|.=-|.|..+..+.+.. ..+++|+|-++ +++.|++.+...+ +++++++.++.++. ...+
T Consensus 18 ~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~ 95 (314)
T COG0275 18 LLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIG 95 (314)
T ss_pred hcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCC
Confidence 3556788999999999999999999853 46799999999 9999999987765 68999999988765 2246
Q ss_pred ceeEEEEec
Q 015306 189 KVDIIISEW 197 (409)
Q Consensus 189 ~~DvVvs~~ 197 (409)
++|-|+.+.
T Consensus 96 ~vDGiL~DL 104 (314)
T COG0275 96 KVDGILLDL 104 (314)
T ss_pred ceeEEEEec
Confidence 888888753
No 296
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.80 E-value=0.072 Score=50.72 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-CCCc
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTK 189 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~ 189 (409)
....++..++|.=-|.|..+..+++ .+..+|+|+|.++ +++.|++++... .+++.++++++.++. . ...+
T Consensus 16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 16 LNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp HT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred hCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCc
Confidence 3357888999999999999999998 4568999999999 999998877543 578999999998865 2 3368
Q ss_pred eeEEEEec
Q 015306 190 VDIIISEW 197 (409)
Q Consensus 190 ~DvVvs~~ 197 (409)
+|-|+.+.
T Consensus 94 ~dgiL~DL 101 (310)
T PF01795_consen 94 VDGILFDL 101 (310)
T ss_dssp EEEEEEE-
T ss_pred cCEEEEcc
Confidence 99999863
No 297
>PRK13699 putative methylase; Provisional
Probab=94.59 E-value=0.13 Score=46.98 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (409)
..+|..|||.-||+|..+..+.+.|. +++|+|+++ ..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 36889999999999999998888865 899999999 999998888653
No 298
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.53 E-value=0.021 Score=55.73 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcccccc
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEI 183 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~ 183 (409)
...+|..|-|+.||.|.+++.+++.| ++|++-|.++ ++++.+.++..|.+... |+++..|+.++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 35789999999999999999999987 6999999999 99999999999988766 88888888665
No 299
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.49 E-value=0.56 Score=45.54 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc----------CC-------CEEEEEecHH--HHHHHHHHHHH-----cCCCCcEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA----------GA-------AHVYAVECSQ--MANMAKQIVEA-----NGFSNVITV 175 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~----------g~-------~~V~~vD~s~--~~~~a~~~~~~-----~~~~~~i~~ 175 (409)
....-+|+|+||.+|..++.+... -. -+|+--|.-. .-...+..... ..-.--+..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344569999999999888766542 01 2677777643 22222221111 011111334
Q ss_pred EEcccccccCCCCceeEEEEecccccccC------------------------------------hhHHHHHHHHHHhcc
Q 015306 176 LKGKIEEIELPVTKVDIIISEWMGYFLLF------------------------------------ENMLNTVLYARDKWL 219 (409)
Q Consensus 176 ~~~d~~~~~~~~~~~DvVvs~~~~~~l~~------------------------------------~~~~~~~l~~~~~~L 219 (409)
+-+.+..--+|.++.|+++|....+.+.. ..++..+|+.+++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 55666666688899999999633332211 124567888889999
Q ss_pred cCCeEEEc
Q 015306 220 VDDGIVLP 227 (409)
Q Consensus 220 kpgG~lip 227 (409)
+|||+++.
T Consensus 174 v~GG~mvl 181 (334)
T PF03492_consen 174 VPGGRMVL 181 (334)
T ss_dssp EEEEEEEE
T ss_pred ccCcEEEE
Confidence 99999983
No 300
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.22 E-value=0.078 Score=41.92 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~ 155 (409)
+.....|||||.|.+...|.+.|. .=+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 456799999999999999999877 567888643
No 301
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.21 E-value=0.25 Score=45.70 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~DvVv 194 (409)
...|+.|+-+| -.-+.++.++-.| +++|..+|+++ ++....+.++..|+.+ ++.+.-|+++. +| .++||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhccc-ChHHHHhhCCeee
Confidence 45678999999 4557777777644 78999999999 9999999999999854 88888888774 33 47899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCC
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDD 222 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (409)
.+++- ....+..++..=...||.-
T Consensus 227 TDPpe----Ti~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 TDPPE----TIKALKLFLGRGIATLKGE 250 (354)
T ss_pred cCchh----hHHHHHHHHhccHHHhcCC
Confidence 87742 1234555555444555543
No 302
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.11 E-value=0.79 Score=42.87 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=81.9
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEcccc
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIE 181 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~ 181 (409)
..|+..+-+.+.+.... ....|+.||||--.-+..+......+++=+|..++++.-++.+...+. ..+.+++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 34555555555544332 235799999998776665543222467777776677766777776542 366889999986
Q ss_pred ccc--------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 182 EIE--------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 182 ~~~--------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.. +.....-+++++.+..++ .+.....++..+.....||+.++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 211 222456688888776655 44567789999988888999988654
No 303
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.08 E-value=0.23 Score=48.34 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=73.5
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH-------HcCC-CCcEEEEEccccccc
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEIE 184 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~~ 184 (409)
.......++....|+|+|.|.+...++. .+.+.-+|+++.. ..+.|..+.. ..|- .+.+..+++++.+..
T Consensus 185 ~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~ 264 (419)
T KOG3924|consen 185 VDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPK 264 (419)
T ss_pred HHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHH
Confidence 3335678889999999999999888887 5677888998876 5555443332 2232 356888888887654
Q ss_pred C---CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 L---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~---~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. -....++|+++.+ ...+ .+..=+..+..-+++|-++|-
T Consensus 265 ~v~eI~~eatvi~vNN~---~Fdp-~L~lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 265 RVTEIQTEATVIFVNNV---AFDP-ELKLRSKEILQKCKDGTRIIS 306 (419)
T ss_pred HHHHHhhcceEEEEecc---cCCH-HHHHhhHHHHhhCCCcceEec
Confidence 2 1367999998654 3332 332223366677889988873
No 304
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.98 E-value=0.34 Score=48.33 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..+|++|+-+|+|. |.....+++ .|+ +|+.+|.++ .+..|++ .|. +.+ +..+. . ..+|+|+..
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v--~~aDVVI~a 264 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V--KEGDIFVTT 264 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H--cCCCEEEEC
Confidence 46899999999997 655555565 677 899999999 7666654 232 222 12221 1 458999862
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. +....+-.+..+.+|+||+++.
T Consensus 265 t--------G~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 265 T--------GNKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred C--------CCHHHHHHHHHhcCCCCcEEEE
Confidence 1 1222233344688999999874
No 305
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.91 E-value=0.39 Score=47.29 Aligned_cols=105 Identities=14% Similarity=0.216 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCChHHHHHHHc------------C----CCEEEEEecHH--HHHHHHHHHH--H-----------cCCC-
Q 015306 123 DKVVLDVGAGTGILSLFCAKA------------G----AAHVYAVECSQ--MANMAKQIVE--A-----------NGFS- 170 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~------------g----~~~V~~vD~s~--~~~~a~~~~~--~-----------~~~~- 170 (409)
..+|+|+|||+|..++.+... + --+|+.-|... .-...+.... . .+-.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999877655321 1 12566666543 2222222111 0 0000
Q ss_pred CcEEEEEcccccccCCCCceeEEEEecccccccC-----------------------------------hhHHHHHHHHH
Q 015306 171 NVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------------------------------ENMLNTVLYAR 215 (409)
Q Consensus 171 ~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~-----------------------------------~~~~~~~l~~~ 215 (409)
--+..+-+.+..--+|.++.++++|....+.+.. ..++..+|+.+
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122233444444578899999998643333321 01345778888
Q ss_pred HhcccCCeEEEc
Q 015306 216 DKWLVDDGIVLP 227 (409)
Q Consensus 216 ~~~LkpgG~lip 227 (409)
.+-|.|||+++.
T Consensus 224 a~ELvpGG~mvl 235 (386)
T PLN02668 224 AQEMKRGGAMFL 235 (386)
T ss_pred HHHhccCcEEEE
Confidence 899999999883
No 306
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.77 E-value=0.2 Score=46.01 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.+.+|....|+|+..|.++..+.+.+- .|++||.-+|.... -.. ..|+....|-..+.....++|-.||+++
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSL----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhh----hcc---cceeeeeccCcccccCCCCCceEEeehh
Confidence 467899999999999999999999855 99999988743322 222 3488888888777654578999999875
Q ss_pred cccccChhHHHHHHHHHHhcccCC
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDD 222 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lkpg 222 (409)
..+..+-.-+..+|..|
T Consensus 280 -------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 -------EKPARVAALIAKWLVNG 296 (358)
T ss_pred -------cCcHHHHHHHHHHHHcc
Confidence 34445555555666554
No 307
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.63 E-value=0.33 Score=45.09 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCChHHHHHHHc-C--------CCEEEEEecHH-HHHHHHHHHHHc-----CCCCcEEEEEcccccccCCC
Q 015306 123 DKVVLDVGAGTGILSLFCAKA-G--------AAHVYAVECSQ-MANMAKQIVEAN-----GFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~-g--------~~~V~~vD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 187 (409)
..+|+|+|+|+|.++..+++. . ..+++.||+|+ +.+..++.+... ....+|.+. .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999999988873 1 24899999999 888888877542 244557773 3443332
Q ss_pred CceeEEEEecc
Q 015306 188 TKVDIIISEWM 198 (409)
Q Consensus 188 ~~~DvVvs~~~ 198 (409)
..-+|+++-+
T Consensus 95 -~~~~iiaNE~ 104 (252)
T PF02636_consen 95 -FPGFIIANEL 104 (252)
T ss_dssp -CCEEEEEESS
T ss_pred -CCEEEEEeee
Confidence 4567777543
No 308
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.45 E-value=0.16 Score=51.82 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc---------------
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--------------- 182 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--------------- 182 (409)
.++.+||-+|+|. |..+..+++ .|+ .|+++|.++ .++.++.. |. +++..+..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~l----Ga----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSM----GA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEeccccccccccccceeecCHH
Confidence 4568999999997 677777777 576 699999999 77766652 32 222222211
Q ss_pred cc------CC--CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 183 IE------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 183 ~~------~~--~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. ++ -..+|+|+...+ +.+...+.-+.++..+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 11 256999987543 2222222234556678999999987
No 309
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.41 E-value=0.87 Score=42.11 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=70.8
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH----cC--CCEEEEEecHH----------------------
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG--AAHVYAVECSQ---------------------- 155 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~----~g--~~~V~~vD~s~---------------------- 155 (409)
..|...+..++.......-+..|+|+||-.|..++.++. .+ ..++++.|.=+
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 445666677776655444456899999999987766543 22 45788887511
Q ss_pred -----HHHHHHHHHHHcCC-CCcEEEEEccccccc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 156 -----MANMAKQIVEANGF-SNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 156 -----~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+..++++...++ .+++.++.+.+.+-- .+.+++-++..+. -.+++ ....|+.+...|.|||++|+
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlYes-T~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLYES-TKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHHH-HHHHHHHHGGGEEEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec----cchHH-HHHHHHHHHhhcCCCeEEEE
Confidence 22333344444443 467999999997642 2234555555432 12233 34678888999999999998
Q ss_pred cCCce
Q 015306 228 DKASL 232 (409)
Q Consensus 228 ~~~~~ 232 (409)
..+..
T Consensus 211 DDY~~ 215 (248)
T PF05711_consen 211 DDYGH 215 (248)
T ss_dssp SSTTT
T ss_pred eCCCC
Confidence 77654
No 310
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.33 E-value=0.13 Score=49.67 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=51.5
Q ss_pred EEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
|+|+.||.|.+++-+.++|..-+.++|+++ +++..+.+.. + .++.+|+.++... ...+|+++..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999999999987888999999 8887777653 2 3456788877532 246899998643
No 311
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.22 E-value=1.5 Score=39.38 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCC----hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTG----ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G----~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (409)
...|..+|. .-..-+.++++.|+.| .+++.+|. .-..++++|-+++ .....++.+...++.+.++|+.++.
T Consensus 29 ~aEfISAlA---AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 29 VAEFISALA---AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred HHHHHHHHh---ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 334555543 4456678999966644 23333333 3344889999988 7777788888788888789999885
Q ss_pred -ccccCCCCceeEEEEe
Q 015306 181 -EEIELPVTKVDIIISE 196 (409)
Q Consensus 181 -~~~~~~~~~~DvVvs~ 196 (409)
+++...-..+|+++.+
T Consensus 106 ~e~~~~~~~~iDF~vVD 122 (218)
T PF07279_consen 106 PEEVMPGLKGIDFVVVD 122 (218)
T ss_pred HHHHHhhccCCCEEEEe
Confidence 4443334679999964
No 312
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.18 E-value=0.41 Score=46.53 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.+++ .+. ...+ .++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh-hccCCcEEEE
Confidence 46789999999875 556556555 3667899999998 8887764 121 1111 1111 1124899884
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. .+ . ...+..+....++|++||+++.
T Consensus 229 ~-~G----~-~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 C-VG----G-RGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred C-CC----C-CccHHHHHHHHHhCcCCcEEEE
Confidence 2 21 1 1122345556689999999873
No 313
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.15 E-value=0.29 Score=47.33 Aligned_cols=54 Identities=30% Similarity=0.322 Sum_probs=40.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHH
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
..+.+.......+-..|+|+|.|.|.++.+++-...-.|+|||-|. ..+.|++.
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 3344444334455578999999999999999884344999999999 77777654
No 314
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.91 E-value=0.46 Score=46.70 Aligned_cols=97 Identities=23% Similarity=0.219 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc-CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE-LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~~Dv 192 (409)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++ .|....+.....+..+ +. ...+.+|+
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4567888999999864 566666777 6777899999999 8777754 2432111111111111 11 11236899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+-.. + .. ..+....+.|+++|.++.
T Consensus 263 vid~~-G----~~----~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AFEMA-G----SV----PALETAYEITRRGGTTVT 288 (371)
T ss_pred EEECC-C----Ch----HHHHHHHHHHhcCCEEEE
Confidence 98421 1 11 234444578999999873
No 315
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.89 E-value=0.58 Score=45.72 Aligned_cols=97 Identities=20% Similarity=0.154 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc--CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (409)
....++.+||-.|||. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.....+..+ +. .....+|
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4567889999999865 666777777 6776799999998 8777754 3332111111111111 10 1224689
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+-. .+ .. ..+....+.|++||+++.
T Consensus 248 ~vid~-~g----~~----~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 248 VVIDA-VG----RP----ETYKQAFYARDLAGTVVL 274 (358)
T ss_pred EEEEC-CC----CH----HHHHHHHHHhccCCEEEE
Confidence 99842 11 11 223444578999999874
No 316
>PRK11524 putative methyltransferase; Provisional
Probab=92.39 E-value=0.2 Score=47.54 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=40.1
Q ss_pred EEEEEcccccc--cCCCCceeEEEEeccccccc--------------ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL--------------FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~DvVvs~~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+++++|+.+. .+++++||+|++++. |... +...+..++.++.++|||||.++.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 57899999885 366789999999974 3221 112245788899999999999874
No 317
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.39 E-value=0.35 Score=46.31 Aligned_cols=84 Identities=25% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
.++.+||-+|||. |.++..+|+ .|+..|+++|.++ .++.|.+. . ++ |..+. ....+|+|+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~- 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDA- 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEEC-
Confidence 3577899999875 777777777 6887788899888 76655432 1 11 11110 12468998842
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+ . ...+....++|+++|+++.
T Consensus 208 ~G----~----~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 208 SG----D----PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred CC----C----HHHHHHHHHhhhcCcEEEE
Confidence 11 1 1234555678999999873
No 318
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.37 E-value=0.48 Score=44.79 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=68.5
Q ss_pred CCEEEEEcCCC-ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 123 DKVVLDVGAGT-GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 123 ~~~VLDlGcG~-G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
+.+|.-||.|. |..+..+|--..+.|+.+|.|. -++.....+. .++..+......+...-.++|+||...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL-- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL-- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE--
Confidence 35778888886 5555555552344999999998 7776665543 4588888877777655578999997543
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEE
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.....+.-+.+++.+.+|||++++
T Consensus 241 -IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 -IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -ecCCCCceehhHHHHHhcCCCcEEE
Confidence 4455566666777789999999987
No 319
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.32 E-value=0.37 Score=45.46 Aligned_cols=73 Identities=26% Similarity=0.282 Sum_probs=52.5
Q ss_pred EEEEcCCCChH-HHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-------CCCceeEEEEe
Q 015306 126 VLDVGAGTGIL-SLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-------PVTKVDIIISE 196 (409)
Q Consensus 126 VLDlGcG~G~l-~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~DvVvs~ 196 (409)
=+|||.|...+ .+.=++...-..+++|+++ .+..|..++.+|++++.+.+++.....-.+ ++..||++.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 47998887533 2222222234789999999 999999999999999999988875533221 13459999998
Q ss_pred cc
Q 015306 197 WM 198 (409)
Q Consensus 197 ~~ 198 (409)
+.
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 74
No 320
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.22 E-value=0.32 Score=45.83 Aligned_cols=94 Identities=26% Similarity=0.224 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--cccccccCCCCceeEEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEEIELPVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~DvVv 194 (409)
..++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++. |....+.... ..+... .....+|+|+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEecCchhhHHHHHHH-hCCCCCCEEE
Confidence 45788999998864 566666777 6776799999888 77776653 3321111100 001111 1224689988
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-. .+ . ...+....+.|+++|+++.
T Consensus 193 d~-~G----~----~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 193 EF-SG----A----TAAVRACLESLDVGGTAVL 216 (280)
T ss_pred EC-CC----C----hHHHHHHHHHhcCCCEEEE
Confidence 42 11 1 1234445678999999873
No 321
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.13 E-value=0.3 Score=41.62 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHH-HHHHHHHHcCCCCcEE-EEEccccc-ccCCCCceeEEEEecc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-MAKQIVEANGFSNVIT-VLKGKIEE-IELPVTKVDIIISEWM 198 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~-~a~~~~~~~~~~~~i~-~~~~d~~~-~~~~~~~~DvVvs~~~ 198 (409)
+++++-+|+..=..-..+.+.|+++|+.||.++ -+. ..+ +++. +...|... +..-.++||++.|-..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 678999999986666667778999999999987 221 111 1111 11112111 1111378999887321
Q ss_pred c-cc--------ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 G-YF--------LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~-~~--------l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. +. +...+++ ..+..+.++|||||.++.
T Consensus 73 iEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccccccccCCCCCccccH-HHHHHHHHhhccCCeEEE
Confidence 1 11 1112233 445667799999999874
No 322
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.00 E-value=1.5 Score=35.11 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCC-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecccc
Q 015306 123 DKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGY 200 (409)
Q Consensus 123 ~~~VLDlGcG~G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~ 200 (409)
..+|.++|-|.= ..+..++++|. .|+++|+++. +. + ..+.++..|+++.... -...|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a---~--~g~~~v~DDitnP~~~iY~~A~lIYS----- 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TA---P--EGLRFVVDDITNPNISIYEGADLIYS----- 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cC---c--ccceEEEccCCCccHHHhhCccceee-----
Confidence 348999999874 34667777885 8999999871 11 1 2388999999886543 367899998
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+...+.+...+-.+.+.++-.-++.|
T Consensus 77 -iRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 77 -IRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred -cCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 33334454444455566654444443
No 323
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.88 E-value=0.28 Score=47.60 Aligned_cols=69 Identities=29% Similarity=0.283 Sum_probs=54.4
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC--C-ceeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--T-KVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~~DvVvs~~~ 198 (409)
.+++|+-||.|.+.+-+.+.|..-+.++|+++ +++.-+.+... ..++..|+..+.... . .+|+|+..+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 57999999999999999999998999999999 88877776542 356667777655321 2 7999998653
No 324
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.85 E-value=0.52 Score=43.37 Aligned_cols=95 Identities=28% Similarity=0.320 Sum_probs=56.6
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~Dv 192 (409)
....++.+||..|+|+ |..+..+++ .| .+|++++.++ ..+.+++. +....+.....+... + ....+.+|+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 3347889999999996 666666777 45 5999999998 77766543 221111111111100 0 112367999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++...- .. ..+....+.|+++|.++
T Consensus 205 vi~~~~-----~~----~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 205 VIDAVG-----GP----ETLAQALRLLRPGGRIV 229 (271)
T ss_pred EEECCC-----CH----HHHHHHHHhcccCCEEE
Confidence 986321 10 23455567889999987
No 325
>PRK13699 putative methylase; Provisional
Probab=91.63 E-value=0.25 Score=45.24 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=39.4
Q ss_pred EEEEEcccccc--cCCCCceeEEEEeccccccc-----C--------hhHHHHHHHHHHhcccCCeEEE
Q 015306 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL-----F--------ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~DvVvs~~~~~~l~-----~--------~~~~~~~l~~~~~~LkpgG~li 226 (409)
++++++|..++ .++++++|+|++++. |.+. . ..-....+.++.|+|||||.++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 46788898876 578899999999974 4321 0 1224577889999999999876
No 326
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.55 E-value=0.93 Score=46.02 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---------------
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 186 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------------- 186 (409)
..+++|+-||.|.+++-+-+.|...|.++|+++ +.+.-+.+.... .....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 459999999999999999889988899999999 777766664211 1134455666665421
Q ss_pred --CCceeEEEEec
Q 015306 187 --VTKVDIIISEW 197 (409)
Q Consensus 187 --~~~~DvVvs~~ 197 (409)
...+|+++..+
T Consensus 165 ~~~p~~DvL~gGp 177 (467)
T PRK10458 165 QHIPDHDVLLAGF 177 (467)
T ss_pred ccCCCCCEEEEcC
Confidence 13689998864
No 327
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.55 E-value=0.58 Score=49.98 Aligned_cols=105 Identities=12% Similarity=0.063 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCChHHHHHHH-c-------C-----CCEEEEEecHH-HHHHHHH--------------HHHH-----cC
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-A-------G-----AAHVYAVECSQ-MANMAKQ--------------IVEA-----NG 168 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~-------g-----~~~V~~vD~s~-~~~~a~~--------------~~~~-----~~ 168 (409)
+.-+|||+|=|+|...+.+.+ . . .-+++++|..+ ..+..++ .... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 446999999999976555443 1 1 23899999754 2222222 1111 12
Q ss_pred C------CC--cEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 169 F------SN--VITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 169 ~------~~--~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+ .+ .+++..+|+.+.-.. ...+|+++.+.+.-.-..+---+.++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 11 345677888764311 2579999987543222222223688999999999999987
No 328
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.32 E-value=1.2 Score=42.99 Aligned_cols=89 Identities=24% Similarity=0.316 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---cccccCCCCceeEEEE
Q 015306 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIELPVTKVDIIIS 195 (409)
Q Consensus 122 ~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~DvVvs 195 (409)
++.+||..|||. |..+..+++ .|..+|++++.++ ..+.+++. +.. .++..+ ........+.+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999998875 666666777 5776899999988 77765542 322 122211 1122212245999986
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. + . ...+....+.|+++|+++
T Consensus 238 ~~-g----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 238 AS-G----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred CC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 31 1 1 123455568889999987
No 329
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.24 E-value=1 Score=43.66 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+||-.|+|. |.++..+|+ .|+..|++++.++ ..+.+++ .|....+.....+...+. .....+|.
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 3456788999998865 566666777 6776789999888 7776644 233211111111111111 12246784
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.+..+ . ...+....++|++||.++.
T Consensus 232 ~v~d~~G----~----~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 232 LILETAG----V----PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred EEEECCC----C----HHHHHHHHHHhhcCCEEEE
Confidence 4433322 1 1344555688899999874
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.15 E-value=0.44 Score=46.08 Aligned_cols=97 Identities=25% Similarity=0.194 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+||-+|+|. |.++..+++ .|+++|++++.++ ..+.+++. |....+.....+...+. .....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 3456789999998764 556666666 6776699999988 77776543 33211111111111111 12247999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+-.. .. ...+....+.|+++|.++.
T Consensus 235 vid~~-----g~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 235 AIECS-----GN----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EEECC-----CC----HHHHHHHHHHhhcCCEEEE
Confidence 98421 11 1233444578999999873
No 331
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.09 E-value=0.79 Score=44.72 Aligned_cols=92 Identities=24% Similarity=0.434 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEec---HH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVEC---SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~---s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
..++.+||-+|+|. |.++..+++ .|+ +|++++. ++ -.+.+++ .|.. .+.....+..+... ...+|+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~-~~~~d~v 242 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKL-VGEFDLI 242 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhh-cCCCCEE
Confidence 35788999999875 677777777 566 7999986 55 5555543 3432 11111111111111 2568988
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+-.. + . ...+....+.|++||.++.
T Consensus 243 id~~-g----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 243 IEAT-G----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred EECc-C----C----HHHHHHHHHHccCCcEEEE
Confidence 8521 1 1 1244556688999998873
No 332
>PLN02740 Alcohol dehydrogenase-like
Probab=91.04 E-value=1.5 Score=43.29 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=35.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (409)
....++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4567899999999875 566666777 6776899999998 8887765
No 333
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=90.96 E-value=0.94 Score=39.86 Aligned_cols=110 Identities=13% Similarity=0.227 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHhccCCCCCC-EEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKI 180 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~-~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~ 180 (409)
.|+..+.+.+.+.....++. .|+.||||--.....+... |..+++-+|..++++.-++.+...+. +.+.+++.+|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 34555555555444333444 8999999998888888774 45588888887766666666665532 12245789998
Q ss_pred cccc---------CCCCceeEEEEecccccccChhHHHHHHHHH
Q 015306 181 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYAR 215 (409)
Q Consensus 181 ~~~~---------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~ 215 (409)
.+.. +.....-+++++.+..++. +.....+++.+
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~-~~~~~~ll~~i 182 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLS-PEQVDALLRAI 182 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCC-HHHHHHHHHHh
Confidence 8632 2246677899988766554 34455555543
No 334
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.89 E-value=0.73 Score=41.31 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=61.5
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (409)
..++++.|.. +.+.|.+........-|.+||.|.|.++..+..+|+.+...||.+. .+.-.+-..+... .+..
T Consensus 28 LSQNfLMD~~----lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~ 101 (326)
T KOG0821|consen 28 LSQNFLMDLR----LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLR 101 (326)
T ss_pred HhHhHHhhhH----HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceE
Confidence 4444555543 3344455556667788999999999999999999999999999999 8887776665443 4578
Q ss_pred EEEccccccc
Q 015306 175 VLKGKIEEIE 184 (409)
Q Consensus 175 ~~~~d~~~~~ 184 (409)
+.++|+....
T Consensus 102 IHh~D~LR~~ 111 (326)
T KOG0821|consen 102 IHHGDVLRFK 111 (326)
T ss_pred Eeccccceeh
Confidence 8888886653
No 335
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.82 E-value=1.3 Score=42.49 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=58.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~Dv 192 (409)
....++.+||..|+|. |..+..+|+ .|. +|++++.++ ..+.+++ .+....+.....+..+ + ......+|+
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceE
Confidence 4467788999988763 777777888 565 799999998 8777754 2332111111111100 0 123467999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++... + . ...+....+.|+++|.++-
T Consensus 236 vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 236 IFDFV-G----T----QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 88521 1 1 2345566789999999873
No 336
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.79 E-value=1.4 Score=38.67 Aligned_cols=97 Identities=24% Similarity=0.286 Sum_probs=60.9
Q ss_pred EEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cC-C--------CCcEEEEEcccccccC
Q 015306 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NG-F--------SNVITVLKGKIEEIEL 185 (409)
Q Consensus 125 ~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~ 185 (409)
+|.-||+|+ | .++..++..|. +|+.+|.++ .++.+++.+.. .+ + -.++++ ..|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 467789987 3 55666777776 999999999 98888776654 11 1 123443 3444443
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
...|+|+=.. ......-..++..+.+.+.|+.+|.-++.+
T Consensus 77 --~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 --VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp --CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred --hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 3689998532 334455678899999999999887755443
No 337
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.56 E-value=4 Score=35.17 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=66.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L 185 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~ 185 (409)
..+.+.+.+. ..++.+|+-|||=+-...+.-......+++..|.+. .... .+. .|+.-|..... +
T Consensus 13 ~~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~----------~~~-~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 13 EFLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF----------GGD-EFVFYDYNEPEEL 79 (162)
T ss_pred HHHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc----------CCc-ceEECCCCChhhh
Confidence 3455555532 245689999999885444433223466899999987 3221 122 34444443321 1
Q ss_pred C---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 P---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ .+++|+||+++. +..+..+......+..++|+++.+|..
T Consensus 80 ~~~l~~~~d~vv~DPP---Fl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPP---FLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hhhcCCCceEEEECCC---CCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 1 479999999986 356677777778887788998888854
No 338
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=90.34 E-value=0.51 Score=48.40 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=60.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (409)
..+.++..||||||..|.+...+++ .| ..-|+|||+-|+ ..+++ +.-++.|++... +..
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi----------kp~~~-c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI----------KPIPN-CDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec----------ccCCc-cchhhhhhhHHHHHHHHHHHHHh
Confidence 4456788999999999999999998 55 447999999771 12222 333344444322 123
Q ss_pred CceeEEEEecccccccC---hhHH-----HHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFLLF---ENML-----NTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~---~~~~-----~~~l~~~~~~LkpgG~li 226 (409)
-+.|+|+++....+... .... -..++-...+|..||.++
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 56799998764443221 1111 122333457888999876
No 339
>PLN02827 Alcohol dehydrogenase-like
Probab=90.17 E-value=1.5 Score=43.29 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--cccc-cc-CCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-IE-LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~~-~~~~~~ 190 (409)
....++.+||-.|+|. |.++..+++ .|+..|+++|.++ ..+.|++ .|....+..... +... +. +..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998865 566666777 6877899999888 7777654 343211111110 1111 10 112368
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
|+|+-. .+ . . ..+....++|++| |+++.
T Consensus 265 d~vid~-~G----~---~-~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 265 DYSFEC-VG----D---T-GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CEEEEC-CC----C---h-HHHHHHHHhhccCCCEEEE
Confidence 998842 11 1 1 2234445778898 99863
No 340
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=1.2 Score=43.01 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc---------CCCEEEEEecHH-HHHHHHHHHHHc
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECSQ-MANMAKQIVEAN 167 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~---------g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (409)
.......++|+|.|+|.++..+++. ...++..||+|+ ....-+++++..
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3445568999999999998877763 256999999999 888888877654
No 341
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.63 E-value=0.061 Score=45.37 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=37.8
Q ss_pred EEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 173 i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+++.......|.++++|+|.++-+..++.. .....+++.++++|||||++-.+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 33444444445577899999999765444433 33457789999999999998643
No 342
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.42 E-value=0.76 Score=37.47 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=51.8
Q ss_pred CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCceeEEEEeccccccc
Q 015306 132 GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL 203 (409)
Q Consensus 132 G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~DvVvs~~~~~~l~ 203 (409)
|.|.++..+|+ .| .+|+++|.++ -.+.+++. |.. .++..+-.++. .+...+|+|+-- ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDC-----VG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TES---EEEETTTSSHHHHHHHHTTTSSEEEEEES-----SS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----ccc---ccccccccccccccccccccccceEEEEe-----cC
Confidence 45888899999 67 7999999999 88877653 321 22332222111 223589999852 11
Q ss_pred ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 204 FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
. ...++....+|+++|.++.-
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEE
T ss_pred c----HHHHHHHHHHhccCCEEEEE
Confidence 1 24556666899999998854
No 343
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.31 E-value=9.2 Score=35.18 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCcee
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVD 191 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~----g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D 191 (409)
...+...+|+|+|+..-+..+... | ..+++.+|+|. .++...+.+......-.+.-+.+|.+.-- ++...--
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 345789999999998766666552 3 45899999999 76654443333322223666777765422 2222222
Q ss_pred EEEEecccccc--cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++. +++.+ ..++.-..++..+...|.||-.++.
T Consensus 156 l~~f--lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVF--LGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEE--ecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 2222 23323 2344566889999999999988774
No 344
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.65 E-value=1.1 Score=43.04 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=40.6
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
.....+|.+|.-+|||. |..++.-|+ +|+.+++|+|+++ -++.|++.
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 35678899999999986 888888887 7999999999999 99998874
No 345
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.59 E-value=2.9 Score=39.43 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (409)
...|..||-=|.|.| .++..+|++|+ +++..|+++ -.....+.++..| ++....+|+.+.. -
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 456789999999998 57888888888 899999999 6666666666665 5888888987753 1
Q ss_pred CCCceeEEEEe
Q 015306 186 PVTKVDIIISE 196 (409)
Q Consensus 186 ~~~~~DvVvs~ 196 (409)
.-+.+|++|.+
T Consensus 111 e~G~V~ILVNN 121 (300)
T KOG1201|consen 111 EVGDVDILVNN 121 (300)
T ss_pred hcCCceEEEec
Confidence 24789999986
No 346
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.56 E-value=0.99 Score=42.80 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=38.6
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
....+|.+|.-.|+|. |+...+-++ +|+.+++|||+++ -.+.|++.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 4568899999999987 666666677 7999999999999 88888764
No 347
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.44 E-value=2.2 Score=36.90 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=59.3
Q ss_pred EEcCCCChHHHHHHH-cC-CCEEEEEec--HH-HHHH---HHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 128 DVGAGTGILSLFCAK-AG-AAHVYAVEC--SQ-MANM---AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 128 DlGcG~G~l~~~la~-~g-~~~V~~vD~--s~-~~~~---a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
=||=|.=.++..+++ .+ ...++|.-. .+ +.+. +..++....-.+.......|++.+. ....+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 366676677888888 45 556666544 33 3322 2233333211122334556776665 23578999999
Q ss_pred ecccccc----------cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFL----------LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+.... .+...+..++..+.++|+++|.+..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8643320 1123457888889999999998873
No 348
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.22 E-value=1.9 Score=40.17 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=49.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc------CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
+...+.+.-.+.++..++|+|||.|.++.++++. +...++.||-.. -. .+-..+........++=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 3444554445567789999999999999999984 245899999865 22 222223332211246777888888
Q ss_pred ccC
Q 015306 183 IEL 185 (409)
Q Consensus 183 ~~~ 185 (409)
+.+
T Consensus 85 l~l 87 (259)
T PF05206_consen 85 LDL 87 (259)
T ss_pred cch
Confidence 764
No 349
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.03 E-value=1.8 Score=35.45 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCCC-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEe
Q 015306 122 KDKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~ 196 (409)
...+|+|||-|.= ..+..|.++|. .|+++|+.+. .+. ..+.++..|+.+..+. -..+|+|.|-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSi 77 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSI 77 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-----cCcceeeecccCCCHHHhcCCcEEEEe
Confidence 4449999999985 45667777885 9999999882 111 2367888898875432 2579999983
No 350
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.92 E-value=3.1 Score=41.73 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..|++|+-+|+|. |......++ .|+ +|+.+|.++ ....+.. .|. ++. ++.+. + ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea-l--~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEA-A--ELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHH-H--hCCCEEEECC
Confidence 5899999999986 433333334 566 899999998 5433322 132 221 33332 1 4689998631
Q ss_pred ccccccChhHHHHHH-HHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (409)
+.. .++ ......+|+|++++-
T Consensus 276 --------G~~-~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 276 --------GNK-DVITAEHMEAMKDGAILAN 297 (425)
T ss_pred --------CCH-HHHHHHHHhcCCCCCEEEE
Confidence 122 233 355678999998873
No 351
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.59 E-value=2.4 Score=40.87 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=56.3
Q ss_pred CCCCC--CEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCce
Q 015306 119 FLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKV 190 (409)
Q Consensus 119 ~~~~~--~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~ 190 (409)
...++ .+||-.|+ |.|..+..+|+ .|+.+|++++.++ ..+.+++. .|....+.....++.+ + ....+.+
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 34454 89999986 45778888888 5766899999888 66666543 2432211111112111 0 0112569
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+.. ++ . . . +....+.|+++|.++.
T Consensus 226 d~vid~-~g----~-~---~-~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYFDN-VG----G-E---I-SDTVISQMNENSHIIL 252 (345)
T ss_pred eEEEEC-CC----c-H---H-HHHHHHHhccCCEEEE
Confidence 999852 11 1 1 1 2445678999999873
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.46 E-value=3.7 Score=32.68 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCCChHHHHHHH---cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEecccccc
Q 015306 131 AGTGILSLFCAK---AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 131 cG~G~l~~~la~---~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs~~~~~~l 202 (409)
||.|.++..+++ .+...|+.+|.++ .++.+++. + +.++.+|..+.. ..-.++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 455667776666 2345899999999 87766542 2 678999998764 2346899888732
Q ss_pred cChhHHHHHHHHHHhcccCCeEEE
Q 015306 203 LFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
........+....+-+.|...++
T Consensus 71 -~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 71 -DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp -SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred -CCHHHHHHHHHHHHHHCCCCeEE
Confidence 11222222333345566766655
No 353
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.11 E-value=3.2 Score=40.21 Aligned_cols=96 Identities=25% Similarity=0.182 Sum_probs=57.6
Q ss_pred ccCCCCCCEEEEEcCCC--ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCc
Q 015306 117 NKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 189 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 189 (409)
.....++.+||-.|+.. |.+++.+|+ .|+ .++++-.++ -.+.+++ .|-+..+.+...|+.+-. .....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 45567899999999544 688899999 677 555555555 4445444 343333444444433321 12247
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+|+... +. ..+....+.|+++|.++.
T Consensus 212 vDvv~D~v------G~----~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 212 VDVVLDTV------GG----DTFAASLAALAPGGRLVS 239 (326)
T ss_pred ceEEEECC------CH----HHHHHHHHHhccCCEEEE
Confidence 99999632 11 223445578899999873
No 354
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.75 E-value=4.2 Score=39.25 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=60.3
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH-------HcCCC-----CcEEEEEcccccccCCCC
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGFS-----NVITVLKGKIEEIELPVT 188 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~~-----~~i~~~~~d~~~~~~~~~ 188 (409)
++|--||+|+ ..++..++..|. +|+..|.++ .++.++..+. ..++. .++++.. ++.+. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5799999995 356666777776 999999998 7776655433 12211 2233221 22221 15
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..|+|+-.. ......-..++..+.+.++|+.+|--+
T Consensus 83 ~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 83 DADFIQESA----PEREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred CCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 689998532 333345567788888999998855433
No 355
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.73 E-value=1.1 Score=43.62 Aligned_cols=96 Identities=22% Similarity=0.252 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-c-CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-E-LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~~D 191 (409)
....++.+||-.|+|. |..+..+|+ .|...|++++.++ ..+.+++ .|....+.....+... + . .....+|
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 4567788999998763 566666777 6787899999988 7776664 3432111111111111 1 0 1234699
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++... .+ ...+....+.|+++|+++
T Consensus 238 ~vld~~-----g~----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 238 AVIIAG-----GG----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 998521 11 133456668899999887
No 356
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.60 E-value=7.2 Score=36.73 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=58.8
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHH-------HHcCC-C--------CcEEEEEcccccccC
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIV-------EANGF-S--------NVITVLKGKIEEIEL 185 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~~~ 185 (409)
+|--||+|. +.++..+++.|. +|+++|.++ .++.+++.+ ...+. . .++++ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 578889985 566777777776 899999999 876555322 22231 1 12332 223322
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
-..+|+|+-.. .........++..+.+.++|+..+.....
T Consensus 80 -~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 -LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred -hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 25689998532 12222335788888888999887764443
No 357
>PLN02494 adenosylhomocysteinase
Probab=86.21 E-value=2.6 Score=42.61 Aligned_cols=85 Identities=25% Similarity=0.347 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..|++|+-+|+|. |......++ .|+ +|+++|.++ ....+.. .|. .+. ++.+. + ...|+|+...
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa-l--~~ADVVI~tT 317 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY----QVL--TLEDV-V--SEADIFVTTT 317 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC----eec--cHHHH-H--hhCCEEEECC
Confidence 6789999999996 433333334 566 899999988 5443322 232 222 33332 1 4689998621
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+....+.......+|+||+++-
T Consensus 318 --------Gt~~vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 318 --------GNKDIIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred --------CCccchHHHHHhcCCCCCEEEE
Confidence 1111222445578999999884
No 358
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.20 E-value=0.53 Score=37.48 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=27.1
Q ss_pred ceeEEEEeccc---ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMG---YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~---~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|+|-.+. +.-.+..-+..+++.+..+|+|||.+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 58999994221 1112334567899999999999999984
No 359
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.70 E-value=5.5 Score=39.70 Aligned_cols=85 Identities=29% Similarity=0.282 Sum_probs=52.0
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...|++|+-+|+|. |......++ .|+ +|+++|.++ ....|.. .|. .+. ++.+. . ...|+|++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~----~v~--~leea-l--~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF----RVM--TMEEA-A--KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC----EeC--CHHHH-H--hcCCEEEEC
Confidence 36899999999997 544444455 566 899999988 5433332 232 222 23332 2 467998863
Q ss_pred cccccccChhHHHHHH-HHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (409)
. +.. .++ ......+|+|++++.
T Consensus 258 T--------G~~-~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 258 T--------GNK-DVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred C--------CCH-HHHHHHHHhcCCCCcEEEE
Confidence 1 122 233 345678999998884
No 360
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.61 E-value=9 Score=36.30 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=60.8
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCCC---------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGFS---------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~~ 184 (409)
.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+++.+.. .|.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 4788999996 456667777776 899999999 88876655432 1210 12222 2333221
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcc-cCCeEEEccC
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLPDK 229 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip~~ 229 (409)
..+|+|+-.. ......-..++..+.+.+ +|+.++.-++
T Consensus 83 ---~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 83 ---ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred ---CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 5689998532 334444556777788888 7787776443
No 361
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.54 E-value=1.2 Score=44.24 Aligned_cols=102 Identities=25% Similarity=0.178 Sum_probs=59.0
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc---cccc-cc--CCCC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~~ 188 (409)
....++.+||-.|+|. |.++..+|+ .|+..|+++|.++ -++.|++. |.. .+... +..+ +. ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcCCC
Confidence 3467788888888865 566666777 6887788888888 77777653 431 12211 1111 11 1224
Q ss_pred ceeEEEEecccccc------cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+|+++-- .+.-- .........+....+++++||.++.
T Consensus 254 g~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 254 EVDCAVDC-VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCcEEEEC-CCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 68998852 12100 0001112355666689999999874
No 362
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.48 E-value=5.6 Score=37.70 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=56.9
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc----------CC---------CCcEEEEEcccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN----------GF---------SNVITVLKGKIE 181 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 181 (409)
++|.-||+|. +.++..++..|. +|+.+|.++ .++.+++.+... +. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899995 356666777776 899999999 887765544321 11 0112221 1221
Q ss_pred cccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 182 ~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
. -..+|+|+-.. .........++..+.+.++|+.+++
T Consensus 82 ~----~~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 14589988632 2222335677778888888887766
No 363
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.48 E-value=2 Score=38.49 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecH
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (409)
...+||-+|||. | ..+..|++.|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567899999995 3 56777888899999999987
No 364
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.38 E-value=3.9 Score=39.70 Aligned_cols=44 Identities=34% Similarity=0.364 Sum_probs=34.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (409)
....++.+||-.|||. |.++..+|+ .|+ +|++++.++ .++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567789999999965 677777777 566 799999998 8777754
No 365
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=85.27 E-value=1.3 Score=43.53 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=56.6
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCc
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 189 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~ 189 (409)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.++ ..+.+++. +.. .++..+-.+ +. .....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhCCC
Confidence 3456788999998764 666777777 6887899999998 77666542 321 222211111 10 11356
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|+-.. + .. ..+....+.|+++|.++
T Consensus 255 ~d~vld~~-g----~~----~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 255 VDYALDTT-G----VP----AVIEQAVDALAPRGTLA 282 (365)
T ss_pred CcEEEECC-C----Cc----HHHHHHHHHhccCCEEE
Confidence 99998521 1 11 23455567889999887
No 366
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.14 E-value=5.1 Score=39.02 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=57.6
Q ss_pred cCCCCCCEEEEEcC-C-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-cccc-c-cCCCCce
Q 015306 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~~ 190 (409)
....+|.+||-.|+ | .|.++..+|+ .|+ +|++++.++ ..+.+++. .|....+..... +..+ + ....+.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 45678999999998 3 5788888888 566 799999888 76665532 343221211111 2211 1 0112469
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+|+-. ++ . ..+....+.|+++|.++
T Consensus 230 D~v~d~-vG-------~--~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 230 DIYFDN-VG-------G--DMLDAALLNMKIHGRIA 255 (348)
T ss_pred EEEEEC-CC-------H--HHHHHHHHHhccCCEEE
Confidence 999842 11 1 23455568899999987
No 367
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.95 E-value=12 Score=33.63 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----C
Q 015306 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP-----V 187 (409)
Q Consensus 122 ~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 187 (409)
++++||-.|++.| .++..+++.|+ +|++++-++ ....+.+..... .++.++.+|+.+.. +. -
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5679999998754 23334445566 899999888 665554444332 24788889887642 00 1
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 4578888754
No 368
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=84.69 E-value=7.1 Score=37.63 Aligned_cols=89 Identities=17% Similarity=0.012 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+||-.|+|. |.++..+|+ .|+ +|++++.++ -.+.+++ .|... ++. ..+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~--~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT--PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc--CcccceEEE
Confidence 4567889999999763 556666777 566 799999998 7776665 34321 111 1111 124578765
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-.. . .. ..+....+.|++||+++.
T Consensus 229 ~~~----~----~~-~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 229 LFA----P----AG-GLVPPALEALDRGGVLAV 252 (329)
T ss_pred ECC----C----cH-HHHHHHHHhhCCCcEEEE
Confidence 311 0 11 235555688999999873
No 369
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.57 E-value=6.4 Score=37.21 Aligned_cols=94 Identities=21% Similarity=0.159 Sum_probs=56.7
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--------CCC---------CcEEEEEcccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--------GFS---------NVITVLKGKIEEI 183 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~ 183 (409)
.+|.-||+|. +.++..+++.|. +|+.+|.++ .++.+++.+... .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4688899986 245556666766 899999999 888776653211 110 123322 233221
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
-...|+|+.... ........++..+...++++.++.
T Consensus 82 ---~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 156899986431 222345667777878887777654
No 370
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.51 E-value=2 Score=41.47 Aligned_cols=95 Identities=27% Similarity=0.363 Sum_probs=55.3
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c--cCCCCceeE
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I--ELPVTKVDI 192 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~~Dv 192 (409)
...++.+||..|+|. |..+..+|+ .|...|++++.++ ..+.+++. +....+.....+..+ + ..+.+.+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 456788999987753 666677777 5656899998877 66665542 321111111111111 1 022357999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++... + . ...+....+.|+++|.++
T Consensus 240 vld~~-g----~----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 240 VIEAV-G----F----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred EEEcc-C----C----HHHHHHHHHHhhcCCEEE
Confidence 98521 1 1 124555568889999987
No 371
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=84.50 E-value=4 Score=39.93 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HH-HHHHHHHHHcCCCCcEEEEE-cccccccCCCCceeEEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MA-NMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~-~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~DvVv 194 (409)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.++ .. ..+++ .|.. .++. .+...+....+.+|+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINR----LGAD---SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHh----CCCc---EEEcCCCHHHHHhhcCCCCEEE
Confidence 45788999999875 667777777 566 788888776 33 33322 3432 1221 11111111113589888
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
- ..+ .. ..+....+.|++||.++
T Consensus 253 d-~~g-------~~-~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 253 D-TVS-------AV-HALGPLLGLLKVNGKLI 275 (360)
T ss_pred E-CCC-------CH-HHHHHHHHHhcCCcEEE
Confidence 4 221 11 23444568899999987
No 372
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=84.38 E-value=4.7 Score=39.08 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=55.8
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc--CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (409)
....++.+||-.|+|. |.++..+++ .|+.+|++++.++ ..+.+++. |....+.....+..+ +. .+...+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 4567788999998653 455555666 5776899999888 77776542 332111111111111 10 1224599
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+-.. + . ...+....+.|+++|.++-
T Consensus 244 ~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 244 VSFDCA-G----V----QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred EEEECC-C----C----HHHHHHHHHhccCCCEEEE
Confidence 998521 1 1 1234555678999998873
No 373
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.34 E-value=1.6 Score=43.03 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
++.+|+-+|+|. |..+...++ .|+ +|+.+|.++ .++.+.... + ..+.....+..++.-.-..+|+|+....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 556799999984 555555555 577 799999988 655544332 1 1122211222222111256899997421
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......+.-+-....+.++||++++
T Consensus 240 ---~~g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 240 ---IPGAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred ---cCCCCCCcCcCHHHHhcCCCCCEEE
Confidence 1000011111233345679998876
No 374
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.23 E-value=6 Score=37.86 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (409)
..++++|-.|++.| .++..+++.|+ +|+.+.-++ -.+.+.+.+....-..++.++.+|+.+.. -.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 45789999998876 34555566676 888888877 55554444433221235888999987753 01
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 35799999864
No 375
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.13 E-value=6.2 Score=38.00 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=57.4
Q ss_pred ccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-cccc-c-cCCCCc
Q 015306 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTK 189 (409)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 189 (409)
.....+|.+||-.|+ |.|.++..+|+ .|+ +|+++..++ ..+.+++. .|....+..... +..+ + ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence 345678999999996 35677777887 566 799988887 76666542 233221211111 2211 0 011257
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|+-. ++ . ..+....+.|+++|.++
T Consensus 222 vd~v~d~-~g-------~--~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 222 IDIYFDN-VG-------G--KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred cEEEEEC-CC-------H--HHHHHHHHHhccCcEEE
Confidence 9999842 11 1 23445568899999987
No 376
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.11 E-value=4.3 Score=39.22 Aligned_cols=97 Identities=25% Similarity=0.276 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc----cccc--cCCC
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK----IEEI--ELPV 187 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d----~~~~--~~~~ 187 (409)
.....++.+||-.|+|. |.++..+|+ .|+..|++++.++ ..+.+++. +....+.....+ ...+ ....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCC
Confidence 35567888999988765 666677777 5775599998887 77666542 332111111111 1111 1233
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+|+|+... + . ...+....+.|+++|.++
T Consensus 233 ~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 233 KGPDVVIECT-G----A----ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 5699998521 1 1 123455568899999887
No 377
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.93 E-value=0.98 Score=45.33 Aligned_cols=106 Identities=17% Similarity=0.038 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------CCCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-------LPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D 191 (409)
..+..+|-+|-|.|.+..++-. .+..++++|++++ +++.|.+++....- ++..+.-.|..+.. ..+..||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence 3456788899999988887766 5667999999999 99999988743221 12233333322211 1346799
Q ss_pred EEEEecc--c-ccccC---hhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWM--G-YFLLF---ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~--~-~~l~~---~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++....= . +.+.. .-.-..++..+...|.|.|.++.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 9997521 1 11110 11225677888899999999864
No 378
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.75 E-value=7.5 Score=37.15 Aligned_cols=95 Identities=17% Similarity=0.067 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccc--cCCCCc
Q 015306 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI--ELPVTK 189 (409)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~~ 189 (409)
.....++.+||-.|+ |.|.++..+|+ .|+ +|++++.++ ..+.+++ .|...-+..... +..+. ....+.
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCC
Confidence 345678899999984 45778888888 566 799999888 7766654 343221111111 11111 112246
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|+-. ++ . . .+....+.|+++|+++
T Consensus 208 vdvv~d~-~G----~-~----~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 208 YDCYFDN-VG----G-E----FSNTVIGQMKKFGRIA 234 (325)
T ss_pred eEEEEEC-CC----H-H----HHHHHHHHhCcCcEEE
Confidence 9999842 11 1 1 2345568899999987
No 379
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.75 E-value=11 Score=35.70 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=59.1
Q ss_pred CEEEEEcCCCC--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------CC-C--------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GF-S--------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~~ 184 (409)
++|.-||+|.= .++..+++.|. .|+.+|.++ .++.+.+.+..+ +. + .++++. .+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH--
Confidence 47888999862 45666666766 899999999 877765433321 21 1 123332 23322
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
-..+|+|+... .........++..+...++|+.+++-.+.
T Consensus 81 --~~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 81 --LADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTS 120 (292)
T ss_pred --hcCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 15689998632 22223445677788888999987764433
No 380
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.34 E-value=8.2 Score=32.39 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=44.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
+..++........+++|+-+|||. +.++..+++.|...|+.+|.++ ..+.+.+...... +.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 78 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--- 78 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc---
Confidence 344454433335678999999963 1233333344556899999987 5554443332211 11122233222
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|+|++..
T Consensus 79 ~~~~Dvvi~~~ 89 (155)
T cd01065 79 LAEADLIINTT 89 (155)
T ss_pred cccCCEEEeCc
Confidence 26799999853
No 381
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=83.29 E-value=11 Score=37.16 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=62.9
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCc-EEEEEcccccccCCCCceeEEEEeccccc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
.||-++-.-|.++..++..+. +.+ .+. .-...++|+..|+++.. ++++.. .+ +++ +.+|+|+.-+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~-~~~d~vl~~~---- 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSI-GDSYISELATRENLRLNGIDESSVKFLDS--TA-DYP-QQPGVVLIKV---- 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---Cee-ehHHHHHHHHHHHHHHcCCCcccceeecc--cc-ccc-CCCCEEEEEe----
Confidence 799999999999999997544 233 223 44456888999988643 555432 22 234 6699998654
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEE
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.-.-..++..+..+...|.||+.+|
T Consensus 115 PK~~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 115 PKTLALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 3333567778888999999999987
No 382
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.25 E-value=3.3 Score=40.28 Aligned_cols=75 Identities=28% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
..++||-||||. | .++..|++.|..+++.+|.+. -++.|++.+....-.-.++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 457899999995 3 567778889999999999862 2344445554443333356666
Q ss_pred cccccccCC--CCceeEEEEe
Q 015306 178 GKIEEIELP--VTKVDIIISE 196 (409)
Q Consensus 178 ~d~~~~~~~--~~~~DvVvs~ 196 (409)
.++....+. -..+|+|+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEc
Confidence 555321111 2569999973
No 383
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.10 E-value=12 Score=36.25 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=53.3
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccc----cc-c-CCCCce
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE----EI-E-LPVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~----~~-~-~~~~~~ 190 (409)
..++.+||-.|+|. |..+..+|+ .|+++|++++.++ ..+.+++ .|....+.....+.. .+ . .+...+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 34788999988653 455556666 5666899999888 6665543 343221111111111 01 0 122569
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+|+... + . ...+....+.|+++|+++
T Consensus 251 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 251 DVVIEAS-G----H----PAAVPEGLELLRRGGTYV 277 (361)
T ss_pred cEEEECC-C----C----hHHHHHHHHHhccCCEEE
Confidence 9998521 1 1 123445568899999987
No 384
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.08 E-value=5.8 Score=37.53 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=55.4
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cC-CC--------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NG-FS--------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~ 184 (409)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+.+.... .+ +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899985 345666667766 899999999 88877654321 11 00 112222 222221
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-...|+|+.... ........++..+.+.++|+.++..
T Consensus 79 --~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 --VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 256899986421 2222344666777788888876643
No 385
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=82.96 E-value=6.5 Score=37.46 Aligned_cols=96 Identities=23% Similarity=0.156 Sum_probs=57.6
Q ss_pred ccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCce
Q 015306 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKV 190 (409)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~ 190 (409)
.....+|.+||-.|+ |.|.++..+|+ .|+ +|++++.++ ..+.+++ .|....+.....+..+ + ....+.+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCc
Confidence 345678899999984 44677777888 566 799999888 7777655 3432211111112111 1 0112569
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+.. .+ . ..+....+.|+++|.++.
T Consensus 213 d~vld~-~g-------~--~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 213 DCYFDN-VG-------G--EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred EEEEEC-CC-------H--HHHHHHHHhhccCCEEEE
Confidence 999842 11 1 234555688999999873
No 386
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.77 E-value=6.5 Score=37.02 Aligned_cols=83 Identities=23% Similarity=0.223 Sum_probs=50.5
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
+|.-||+|. |.++..+.+.|. +|+++|.++ .++.+.+. +. +.....+.. . -..+|+|+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~---~-~~~aDlVilavp--- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL---VDEASTDLS---L-LKDCDLVILALP--- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC---cccccCCHh---H-hcCCCEEEEcCC---
Confidence 577788886 456667767765 899999998 77666442 22 211111211 1 156899986431
Q ss_pred ccChhHHHHHHHHHHhcccCCeEE
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
......++..+...++++.++
T Consensus 67 ---~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 ---IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHHHhCCCCcEE
Confidence 234456677777777777544
No 387
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=82.61 E-value=9.1 Score=33.82 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=70.6
Q ss_pred cChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH----cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE
Q 015306 102 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (409)
Q Consensus 102 ~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~----~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (409)
+.....-.|.+.|.+ .++..|++.|.-.|..+++.|. .| ..+|+++|++- -++.+... . .+|.+
T Consensus 53 k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f 122 (237)
T COG3510 53 KSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILF 122 (237)
T ss_pred CCHHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEE
Confidence 344445566666553 4667899999999987777665 35 24899999987 54333221 2 45999
Q ss_pred EEcccccccC-------CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 176 LKGKIEEIEL-------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 176 ~~~d~~~~~~-------~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++++..+... ..+.--+.++. +. -++-...-+-++...++|.-|-+++...
T Consensus 123 ~egss~dpai~eqi~~~~~~y~kIfvil--Ds-dHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 123 IEGSSTDPAIAEQIRRLKNEYPKIFVIL--DS-DHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCcEEEEe--cC-CchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 9999988642 12222333331 11 2222333355677788898898877543
No 388
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.58 E-value=7.2 Score=42.10 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=65.5
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (409)
++|.-||+|+ ..++..++..|. .|+.+|.++ .++.+.+.+... + + -.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5899999998 466777778877 999999999 888776654321 1 1 1234432 233222
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
...|+|+=.. ......-..++..+.++++|+.++.-++.+
T Consensus 391 ---~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 391 ---ERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred ---cCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 5789888422 344455678899999999999887655433
No 389
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.14 E-value=9 Score=36.61 Aligned_cols=93 Identities=26% Similarity=0.278 Sum_probs=56.3
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~ 190 (409)
....++.+||.+|+|. |..+..+++ .|...|++++.++ ..+.+++. +.. .++..+-.+. ......+
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCCCC
Confidence 4567888999998653 556666666 5665589999888 77766442 322 2222221111 1123579
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+++... + . ...+....+.|+++|.++
T Consensus 228 d~v~~~~-~----~----~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 228 DVVIEAT-G----V----PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred cEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 9998621 1 1 134455568889999887
No 390
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.10 E-value=7.3 Score=42.00 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=65.5
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (409)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+++.+... + + -.+|++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 5799999997 366667777876 999999999 888776655421 1 1 0223332 12211
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
-..+|+|+=. .......-..++.++.++++|+.++.-++.+
T Consensus 390 --~~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 390 --FDNVDIVVEA----VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred --hcCCCEEEEc----CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2578999843 2444455678899999999999888755443
No 391
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=82.02 E-value=5.8 Score=42.92 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=65.9
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CC--------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (409)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+.+... + +. .++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 5799999997 356667777776 999999999 988876665432 1 11 234332 22222
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
-...|+|+= ........-..++.++.++++|+.++.-++.+
T Consensus 412 --~~~aDlViE----Av~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 412 --FKNADMVIE----AVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred --hccCCeehh----hccccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 257898883 22444456678899999999999988755433
No 392
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=81.72 E-value=3 Score=41.14 Aligned_cols=96 Identities=27% Similarity=0.263 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc---cc----ccccCCC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KI----EEIELPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~----~~~~~~~ 187 (409)
....++.+||-.|+|. |..++.+|+ .|+.+|++++.++ ..+.+++ .|....+..... +. ..+ .+.
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHh-cCC
Confidence 3567788898887754 455555666 5776899999888 6655554 343221111110 11 111 223
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+|+|+.. .+ .....+....+.|+++|+++
T Consensus 274 ~gvDvvld~-~g-------~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 274 WGADIQVEA-AG-------APPATIPQMEKSIAINGKIV 304 (384)
T ss_pred CCCCEEEEC-CC-------CcHHHHHHHHHHHHcCCEEE
Confidence 569999852 11 11233455567888999987
No 393
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.70 E-value=3.3 Score=35.04 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=31.1
Q ss_pred EEcCCCC--hHHHHHH--Hc-CCCEEEEEecHH-HHHHHHHH--HHHcCCCCcEEEEEccc
Q 015306 128 DVGAGTG--ILSLFCA--KA-GAAHVYAVECSQ-MANMAKQI--VEANGFSNVITVLKGKI 180 (409)
Q Consensus 128 DlGcG~G--~l~~~la--~~-g~~~V~~vD~s~-~~~~a~~~--~~~~~~~~~i~~~~~d~ 180 (409)
|||++.| .....++ .. +..+|+++|+++ .++..+++ +..+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444443 33 356899999999 99999988 66554433355554443
No 394
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=81.65 E-value=3.4 Score=40.48 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=55.7
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--cc----ccccCCC
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KI----EEIELPV 187 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~----~~~~~~~ 187 (409)
.....++.+||-.|+|. |.++..+|+ .|+..|++++.++ ..+.+++ .|....+..... +. .++ .+
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~-~~- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEM-TD- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHH-hC-
Confidence 34567888999988754 455556666 6777799999887 7776644 233211111111 11 111 23
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhccc-CCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLV-DDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~lip 227 (409)
+.+|+|+.. .+ . ...+....+.|+ ++|.++.
T Consensus 252 ~~~d~vid~-~g----~----~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 252 GGVDYAFEV-IG----S----ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCCcEEEEC-CC----C----HHHHHHHHHHhccCCCEEEE
Confidence 569999842 11 1 123344557788 9999873
No 395
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.64 E-value=9 Score=41.31 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=65.0
Q ss_pred CEEEEEcCCC--ChHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcccccc
Q 015306 124 KVVLDVGAGT--GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEI 183 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~ 183 (409)
++|.-||+|+ ..++..++ ..|. .|+.+|.++ .++.+.+.+... + + .++|++. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence 6899999998 35666666 5666 999999999 888876655331 1 1 1234433 22221
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
-..+|+|+=. .......-..++..+.+.++|+.++.-++.+
T Consensus 387 ---~~~aDlViEa----v~E~~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 387 ---FKHADVVIEA----VFEDLALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred ---hccCCEEeec----ccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2568998842 2444455678899999999999888755433
No 396
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=81.50 E-value=6.4 Score=37.65 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=54.9
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC----CcEEEEEcccccccCCCCceeEEEEe
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.+|+-+|+|. |.++..|++.|. .|+.++-++ .++..++. .|+. .....+...... +.+.+.+|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence 4799999996 577888888876 799999876 55544331 2221 000111100000 1112579998863
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. -.......+..+..++.++..+++
T Consensus 78 v------K~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 78 C------KAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred C------CHHhHHHHHHHHHhhCCCCCEEEE
Confidence 1 112455677788888988887764
No 397
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.42 E-value=7.9 Score=36.98 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=51.6
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+|.-||+|. +.++..+.+.|. .+|+++|.++ .++.+++ .++.. . ...+..+. -..+|+|+....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~---~~~aDvViiavp- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA---VKGADLVILCVP- 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH---hcCCCEEEECCC-
Confidence 5789999886 345555555664 4899999998 7666543 33311 1 11222221 156899986432
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......++..+...+++|+.++
T Consensus 76 -----~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 -----VGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEE
Confidence 1234556666667788887654
No 398
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.33 E-value=16 Score=34.51 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 186 (409)
.++++||-.|++.| .++..+++.|+ +|+.++.++ ..+...+.+...+ .++.++.+|+.+.. +.
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999998765 34445555666 788887653 3333333344333 35788899987643 11
Q ss_pred -CCceeEEEEec
Q 015306 187 -VTKVDIIISEW 197 (409)
Q Consensus 187 -~~~~DvVvs~~ 197 (409)
.+++|+||...
T Consensus 121 ~~~~iD~lI~~A 132 (290)
T PRK06701 121 ELGRLDILVNNA 132 (290)
T ss_pred HcCCCCEEEECC
Confidence 14689998753
No 399
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=81.30 E-value=13 Score=34.48 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=51.5
Q ss_pred HHHHHHHh-ccCCCCCCEEEEEcCCCC---hH-HHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 015306 109 SYQNVIYQ-NKFLFKDKVVLDVGAGTG---IL-SLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181 (409)
Q Consensus 109 ~~~~~l~~-~~~~~~~~~VLDlGcG~G---~l-~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (409)
.+-+.|.. ........+||.+|+|+- .- +..+.+ .+ .+.++-.|+.+. .++.-..+.+|..
T Consensus 47 QLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~------------vSDa~~~~~~Dc~ 114 (299)
T PF06460_consen 47 QLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY------------VSDADQSIVGDCR 114 (299)
T ss_dssp HHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--------------B-SSSEEEES-GG
T ss_pred HHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh------------ccccCCceecccc
Confidence 33444433 244566789999999973 12 233334 22 236666776551 1122356778888
Q ss_pred cccCCCCceeEEEEecccc--------cccChhHHHHHHHHHHhcccCCeEEE
Q 015306 182 EIELPVTKVDIIISEWMGY--------FLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 182 ~~~~~~~~~DvVvs~~~~~--------~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+..+ .++|+|+|++-+. -...+.-...+..-++.-|+-||.+.
T Consensus 115 t~~~~-~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 115 TYMPP-DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp GEEES-S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred ccCCC-CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 88766 9999999986310 11223445566677778899999876
No 400
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.29 E-value=16 Score=32.68 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecH
Q 015306 122 KDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECS 154 (409)
Q Consensus 122 ~~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s 154 (409)
...+|+-+|||. +..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999996 356778888999899999988
No 401
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=81.07 E-value=7.9 Score=30.05 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=36.7
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
++|| +-||+|..+-.++. ..++.+..+|++ +++...++.++......+|+|+..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~----------------k~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN----------------KMNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred cEEE-EECCCchhHHHHHH----------------HHHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEEC
Confidence 4566 56999866655544 345666777875 788888877764333578999974
No 402
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=80.72 E-value=4.4 Score=39.72 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=56.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--ccccc-c-cCCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEE-I-ELPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~~~~ 190 (409)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++. |....+.... .++.+ + ....+.+
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCCCC
Confidence 4567889999999865 666777777 6777899999998 87777552 4322121111 11111 1 0112368
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC-eEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (409)
|+|+-. .+ . ...+....+.++++ |+++
T Consensus 257 d~vid~-~G----~----~~~~~~~~~~~~~~~G~~v 284 (368)
T TIGR02818 257 DYSFEC-IG----N----VNVMRAALECCHKGWGESI 284 (368)
T ss_pred CEEEEC-CC----C----HHHHHHHHHHhhcCCCeEE
Confidence 988842 11 1 12344445778886 8876
No 403
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.46 E-value=15 Score=34.95 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=80.1
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 182 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (409)
.|+..|-+.+.+..... ...|+-||||--.=+..+-.-...+|+=+|.-+.++.=++.+...+. +..++++..|+.+
T Consensus 76 ~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 76 ARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 45555555555443322 57899999996443333222112478888887777777777776663 3468999999984
Q ss_pred cc---------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 183 IE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 183 ~~---------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. +....--+++++.+..++ .+.....++..+...+.||-.++..
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL-~~~~v~~ll~~I~~~~~~gS~~~~~ 208 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYL-PEEAVDRLLSRIAALSAPGSRVAFD 208 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccC-CHHHHHHHHHHHHHhCCCCceEEEe
Confidence 33 224556688888765555 3456779999998888888887754
No 404
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.28 E-value=12 Score=35.82 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=54.0
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-CC----------CCcEEEEEcccccccCCCCc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-GF----------SNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~----------~~~i~~~~~d~~~~~~~~~~ 189 (409)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+++.+... +. ..++++ ..|..+. -..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---~~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---VSG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH---hcc
Confidence 4688899986 355566666665 899999998 877776542211 10 011222 1222221 156
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.|+|+... .........++..+..+++++.+++
T Consensus 80 aDlVi~av----~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 80 ADLVIEAV----PEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred CCEEEEec----cCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 89998632 1122235567777777777766554
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=80.21 E-value=10 Score=34.86 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-H-HHHHHHHHHHcCCCCcEEEEEccccccc---------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-M-ANMAKQIVEANGFSNVITVLKGKIEEIE---------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~-~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~ 186 (409)
..+++||-.|++.| .++..+++.|..+|++++-++ . ++.+.+.+...+- .+++++.+|+.+.. ..
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 45678999999765 233334445545899998776 4 5555444544432 25889999987643 11
Q ss_pred CCceeEEEEe
Q 015306 187 VTKVDIIISE 196 (409)
Q Consensus 187 ~~~~DvVvs~ 196 (409)
.+..|+++.+
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 2579988865
No 406
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.08 E-value=7.6 Score=36.00 Aligned_cols=92 Identities=24% Similarity=0.227 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+||-.|||. |..+..+|+ .|..+|++++.++ ..+.+++. |..+.+..... .. .....+|+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~-~~~~~~d~vl 164 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTA---DE-IGGRGADVVI 164 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccch---hh-hcCCCCCEEE
Confidence 4567888999998865 566666777 5665599999888 77666653 21111111100 11 1235699998
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
... .. ...+....+.|+++|.++
T Consensus 165 ~~~-----~~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 165 EAS-----GS----PSALETALRLLRDRGRVV 187 (277)
T ss_pred Ecc-----CC----hHHHHHHHHHhcCCcEEE
Confidence 521 11 123445567889999887
No 407
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=79.75 E-value=3.8 Score=39.47 Aligned_cols=97 Identities=23% Similarity=0.253 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c-CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E-LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~~Dv 192 (409)
....++.+||..|+|. |..+..+|+ .|...|++++.++ ..+.+++ .+....+.........+ . .+...+|+
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGADDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEecCccccHHHHHHHhCCCCCCE
Confidence 4456788999998765 666666777 5765699998887 6666543 23321111111111111 1 22245999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++... .. ...+....+.|+++|.++-
T Consensus 231 vld~~-----g~----~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 231 VIEAA-----GS----PATIEQALALARPGGKVVL 256 (343)
T ss_pred EEECC-----CC----HHHHHHHHHHhhcCCEEEE
Confidence 98521 11 1234555688899999873
No 408
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=79.28 E-value=12 Score=33.77 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-------------------HHHHHHHHHHHcCCCCcEEEEEccc
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-------------------MANMAKQIVEANGFSNVITVLKGKI 180 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-------------------~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (409)
...+|+-+|||. | .++..+++.|..+++.+|.+. -++.+.+.+....-.-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 456899999995 3 667788889999999999881 2334444444333222355555444
Q ss_pred ccccCC--CCceeEEEE
Q 015306 181 EEIELP--VTKVDIIIS 195 (409)
Q Consensus 181 ~~~~~~--~~~~DvVvs 195 (409)
...... -..+|+|+.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 332111 156999995
No 409
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.11 E-value=6.4 Score=38.91 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=47.0
Q ss_pred CEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEEec
Q 015306 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEW 197 (409)
Q Consensus 124 ~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~DvVvs~~ 197 (409)
++||-||||. | ..+..+|+.+..+|+..|-+. .++.+..... .+++.++.|+.+.+-- -..+|+|++-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4799999964 3 334455666767999999998 6665554432 2588999998876410 14569999854
No 410
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=79.08 E-value=4.3 Score=39.25 Aligned_cols=91 Identities=25% Similarity=0.310 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCcee
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTKVD 191 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~~D 191 (409)
..++.+||-.|+|. |.++..+|+ .|+++|++++.++ ..+.+++ .|.. .++...-.+ +. ...+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCc
Confidence 34778899988753 556666666 6777899999888 7766643 2331 222211111 11 1123689
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++... + . ...+....+.|+++|.++
T Consensus 246 ~vid~~-g----~----~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 246 AVIDFV-N----N----SATASLAFDILAKGGKLV 271 (350)
T ss_pred EEEECC-C----C----HHHHHHHHHHhhcCCeEE
Confidence 998521 1 1 123455568889999887
No 411
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.02 E-value=10 Score=34.76 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++...+.+...+...++.++.+|+.+... .
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35789999998765 34455556676 799999888 666665555542223458889999876430 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|++|.+.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 25789999863
No 412
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=78.96 E-value=4 Score=39.87 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc------cCCCCc
Q 015306 119 FLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI------ELPVTK 189 (409)
Q Consensus 119 ~~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~ 189 (409)
...++.+||-.|+| .|.++..+++ .|+..|++++.++ ..+.+++ .+.. .++..+-.++ ..+...
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCCC
Confidence 34677888877765 3555556666 5776699999888 7666643 2331 2222221111 122356
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|+... ... ..+....+.|+++|.++
T Consensus 257 ~d~vld~v-----g~~----~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 257 VDVVVEAL-----GKP----ETFKLALDVVRDGGRAV 284 (367)
T ss_pred CCEEEEeC-----CCH----HHHHHHHHHHhcCCEEE
Confidence 99998531 111 13455668899999987
No 413
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.40 E-value=25 Score=33.27 Aligned_cols=96 Identities=22% Similarity=0.289 Sum_probs=57.5
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH-------HcCC-C--------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGF-S--------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~--------~~i~~~~~d~~~~~ 184 (409)
++|.-||+|. +.++..++..|. +|+.+|.++ .++.+++.+. ..+. . .++.+ ..+.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHH--
Confidence 4688899985 355566666765 999999999 8776654432 1221 0 11222 222222
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
-...|+|+... .........++..+...++|+.+++-..
T Consensus 81 --~~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~t 119 (295)
T PLN02545 81 --LRDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNT 119 (295)
T ss_pred --hCCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 15689998632 2333455667777888888888776333
No 414
>PRK08324 short chain dehydrogenase; Validated
Probab=78.26 E-value=14 Score=39.60 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|+++|.++ .++.+.+.+... .++.++.+|+.+.. + .
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35789999987554 23444455676 899999988 666555444322 35888888887643 1 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|+||...
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 24689999863
No 415
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=78.12 E-value=14 Score=32.55 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=50.6
Q ss_pred EEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHH------------HHHcCCCCcEEEEEcccccccCCCCc
Q 015306 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQI------------VEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 125 ~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
+|--+|.|- | .++..+|+.|. +|+|+|+++ .++..++- +.+..-..+..+. .|..+. -..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---hhc
Confidence 566677775 3 44556667776 999999999 77665421 1111001223322 222221 145
Q ss_pred eeEEEEe-ccccccc---ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 190 VDIIISE-WMGYFLL---FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 190 ~DvVvs~-~~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.|+++.. +....-. ....+..+++.+.+.|+++..++..
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 7877753 1111111 2244678888888999998877744
No 416
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=77.73 E-value=16 Score=34.83 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...+++|+-+|+|. |......+ ..|+ +|+.+|.++ ..+.++. .+. +++. ..++..--..+|+|+..
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G~----~~~~--~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MGL----SPFH--LSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCC----eeec--HHHHHHHhCCCCEEEEC
Confidence 34689999999986 33333333 3576 999999998 6554432 232 2221 11211112579999974
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. . . .+-+.....++||+.++
T Consensus 218 ~p-~-----~---~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 218 IP-A-----L---VLTKEVLSKMPPEALII 238 (296)
T ss_pred CC-h-----h---hhhHHHHHcCCCCcEEE
Confidence 21 1 1 12234456788988877
No 417
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=76.96 E-value=18 Score=34.26 Aligned_cols=89 Identities=17% Similarity=0.127 Sum_probs=53.0
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+||-.|+|. |..+..+++ .|+ +|++++.++ ..+.+++ .|... +... ... .....+|+++
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~-~~~~----~~~-~~~~~~d~vi 219 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVET-VLPD----EAE-SEGGGFDVVV 219 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcE-EeCc----ccc-ccCCCCCEEE
Confidence 4567788999997643 344445555 566 599999888 8777765 24321 1111 111 2335799998
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. ... ...+....+.|+++|.++
T Consensus 220 d~-----~g~----~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 220 EA-----TGS----PSGLELALRLVRPRGTVV 242 (319)
T ss_pred EC-----CCC----hHHHHHHHHHhhcCCEEE
Confidence 52 111 123344457789999887
No 418
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=76.92 E-value=13 Score=33.80 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecH-------------------H-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------Q-MANMAKQIVEANGFSNVITVLKGK 179 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s-------------------~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (409)
...+|+-+|||. | ..+..|++.|..+++.+|.+ . -++.+.+.+....-.-+++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 456899999995 3 66777888899999988543 3 344445555443322235555555
Q ss_pred cccccCC--CCceeEEEEe
Q 015306 180 IEEIELP--VTKVDIIISE 196 (409)
Q Consensus 180 ~~~~~~~--~~~~DvVvs~ 196 (409)
+...... -..+|+||..
T Consensus 100 i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 100 LDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eCHHHHHHHHhCCCEEEEc
Confidence 4221111 1569999973
No 419
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=76.56 E-value=5.9 Score=33.17 Aligned_cols=86 Identities=23% Similarity=0.311 Sum_probs=50.3
Q ss_pred EEEEcCCC-C-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccc-------c---cCCCCceeEE
Q 015306 126 VLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE-------I---ELPVTKVDII 193 (409)
Q Consensus 126 VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~-------~---~~~~~~~DvV 193 (409)
|+-+|+|. | .++..|++.|. +|+.+.-++.++. +...+ +++...+-.. . ......+|+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~----~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEA----IKEQG----LTITGPDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHH----HHHHC----EEEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHh----hhhee----EEEEecccceecccccccCcchhccCCCcEE
Confidence 56678775 3 44555556555 8999998872221 22333 3333333000 0 0124689999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+... -....+.++..+.+.+.++..++
T Consensus 72 iv~v------Ka~~~~~~l~~l~~~~~~~t~iv 98 (151)
T PF02558_consen 72 IVAV------KAYQLEQALQSLKPYLDPNTTIV 98 (151)
T ss_dssp EE-S------SGGGHHHHHHHHCTGEETTEEEE
T ss_pred EEEe------cccchHHHHHHHhhccCCCcEEE
Confidence 9632 22356778888999999997766
No 420
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.40 E-value=11 Score=37.17 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecH-------------------H-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------Q-MANMAKQIVEANGFSNVITVLKGK 179 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s-------------------~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (409)
.+.+||-+|||. | ..+..|++.|..+++.+|.+ . -++.+.+.+.+..-.-.++.+...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 567899999984 4 46777888999999999987 3 445555555443221224444433
Q ss_pred cccccCC--CCceeEEEE
Q 015306 180 IEEIELP--VTKVDIIIS 195 (409)
Q Consensus 180 ~~~~~~~--~~~~DvVvs 195 (409)
+...... -..+|+||.
T Consensus 214 ~~~~~~~~~~~~~D~Vv~ 231 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVD 231 (376)
T ss_pred CChHHHHHHHhCCCEEEE
Confidence 3321110 156999986
No 421
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=76.35 E-value=6.2 Score=38.06 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc--CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (409)
....++.+||-.|+|. |..+..+++ .|..+|++++.++ ....+++ .+....+.....+... +. .+...+|
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCCCC
Confidence 3456788888887643 344555566 5756899999888 6666554 2332212222222111 10 1235699
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+... +. ...+..+.+.|+++|.++
T Consensus 238 ~vld~~--------g~-~~~~~~~~~~l~~~g~~v 263 (345)
T cd08286 238 VVIEAV--------GI-PATFELCQELVAPGGHIA 263 (345)
T ss_pred EEEECC--------CC-HHHHHHHHHhccCCcEEE
Confidence 998521 11 123556668899999987
No 422
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=76.23 E-value=5.7 Score=38.76 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc----c-c-CCCC
Q 015306 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----I-E-LPVT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-~-~~~~ 188 (409)
....++.+||-.|+| .|..+..+++ .|..+|++++.++ ..+.+++ .+.. .++..+-.+ + . .+..
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHcCCC
Confidence 446678899998875 3556666666 5775699998888 6666543 2331 222221111 1 0 1235
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+|+++... .. ...+....+.|+++|+++
T Consensus 251 ~vd~vld~~-----~~----~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 251 GADYAFEAV-----GR----AATIRQALAMTRKGGTAV 279 (363)
T ss_pred CCCEEEEcC-----CC----hHHHHHHHHHhhcCCeEE
Confidence 699888521 11 133455668899999887
No 423
>PRK06128 oxidoreductase; Provisional
Probab=75.79 E-value=34 Score=32.30 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=44.2
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH---HHHHHHHHHHHcCCCCcEEEEEcccccccC---------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ---MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (409)
..+++||-.|++.| .++..+++.|+ +|+.+..+. ..+...+.+...+ .++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 35789999997665 34445555676 677665432 2233333333333 347788899876431
Q ss_pred -CCCceeEEEEec
Q 015306 186 -PVTKVDIIISEW 197 (409)
Q Consensus 186 -~~~~~DvVvs~~ 197 (409)
..++.|++|.+.
T Consensus 130 ~~~g~iD~lV~nA 142 (300)
T PRK06128 130 KELGGLDILVNIA 142 (300)
T ss_pred HHhCCCCEEEECC
Confidence 124789999864
No 424
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=75.66 E-value=12 Score=31.58 Aligned_cols=72 Identities=31% Similarity=0.305 Sum_probs=50.5
Q ss_pred CEEEEEcCCCC---hHHHHHHHcCCCEEEEEecH--H-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CCC
Q 015306 124 KVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS--Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 187 (409)
Q Consensus 124 ~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s--~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 187 (409)
++||-.|+++| .++..+++.|..+|+.+.-+ . .+......+...+ .++.++..|+.+.. ...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 36888898876 44556666778899999987 4 5555555555555 56999999987643 113
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
+++|++|.+.
T Consensus 79 ~~ld~li~~a 88 (167)
T PF00106_consen 79 GPLDILINNA 88 (167)
T ss_dssp SSESEEEEEC
T ss_pred cccccccccc
Confidence 6899999864
No 425
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=75.55 E-value=11 Score=35.61 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (409)
...++..|||.-+|+|.....+.+.|- +++++|+++ .++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 567899999999999999888888755 899999999 999998888754
No 426
>PRK06914 short chain dehydrogenase; Provisional
Probab=75.28 E-value=15 Score=34.20 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---------CCCc
Q 015306 123 DKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------PVTK 189 (409)
Q Consensus 123 ~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~~ 189 (409)
++++|-.|++.| .++..+++.|+ +|++++-++ .++...+.....+...++.++.+|+.+... .-++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 567899987664 23344455666 899998777 555554444444444568899999877431 1246
Q ss_pred eeEEEEec
Q 015306 190 VDIIISEW 197 (409)
Q Consensus 190 ~DvVvs~~ 197 (409)
+|+|+...
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 89988753
No 427
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=74.90 E-value=25 Score=34.47 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=32.3
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (409)
....++.+||-.|+|. |.++..+++ .|+.+|++++.++ ..+.+++
T Consensus 186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~ 233 (373)
T cd08299 186 AKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE 233 (373)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567788999988753 455555566 5776899999888 7777644
No 428
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=74.89 E-value=4.9 Score=40.41 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcCCCChHHH--HHHHcCCCEEE------EEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 120 LFKDKVVLDVGAGTGILSL--FCAKAGAAHVY------AVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~--~la~~g~~~V~------~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
...+++|+-||||+=..+. .+...|. +|+ +||... ..+.|. ..|+. + .+..+. -...
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA~----~dGF~----v--~~~~Ea---~~~A 98 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKAT----ENGFK----V--GTYEEL---IPQA 98 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHHH----hcCCc----c--CCHHHH---HHhC
Confidence 3578999999999822211 1111244 333 334434 444333 33542 1 334333 2689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
|+|+.-.. .+ ....+...+...||||..+.++..
T Consensus 99 DvVviLlP-----Dt-~q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 99 DLVINLTP-----DK-QHSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred CEEEEcCC-----hH-HHHHHHHHHHhhCCCCCEEEecCC
Confidence 99997432 22 245556888899999999887654
No 429
>PRK10083 putative oxidoreductase; Provisional
Probab=74.88 E-value=14 Score=35.44 Aligned_cols=97 Identities=20% Similarity=0.155 Sum_probs=54.2
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~Dv 192 (409)
....++.+||-.|+|. |..+..+++ . |+..+++++.++ ..+.+++. |....+.....++.+ +.-....+|+
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCCCCE
Confidence 4567888999999754 455556666 3 887899999988 77666542 332111111111111 1101123567
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+.. .+ . ...+....+.|+++|.++-
T Consensus 232 vid~-~g----~----~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 232 IIDA-AC----H----PSILEEAVTLASPAARIVL 257 (339)
T ss_pred EEEC-CC----C----HHHHHHHHHHhhcCCEEEE
Confidence 7641 11 1 1234455588999999873
No 430
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=74.86 E-value=9.5 Score=36.58 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=55.3
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccc----ccc----cCCCCceeEE
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI----EEI----ELPVTKVDII 193 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~----~~~~~~~DvV 193 (409)
.+|+-+|+|. |.++..|++.| ..|+.+--++.++. +..+|+ .+....- ... ......+|+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~----l~~~GL----~i~~~~~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEA----LKKKGL----RIEDEGGNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHH----HHhCCe----EEecCCCccccccccccChhhcCCCCEE
Confidence 3688999996 68888899988 57777666554333 333353 2222111 000 1113579999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... -....+.++..+...+++...+++
T Consensus 72 iv~v------Ka~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 72 IVTV------KAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred EEEe------ccccHHHHHHHhhhcCCCCcEEEE
Confidence 9632 223567888888899999987663
No 431
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.83 E-value=20 Score=34.04 Aligned_cols=85 Identities=19% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCCh---HHHHHHHcCCCEEEEEecHH-HHHHHHHHH---HHcCCCCcEEEEEcccc
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIV---EANGFSNVITVLKGKIE 181 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~---~~~~~~~~i~~~~~d~~ 181 (409)
-+...|........+++||-+|+| |. .+..+++.|+++|+.++.++ ..+.+++.. ...+ ..+.+...|+.
T Consensus 112 G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~ 188 (289)
T PRK12548 112 GFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLN 188 (289)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechh
Confidence 455555543333567899999997 52 22334457888899998873 223333322 2211 12334444554
Q ss_pred ccc---CCCCceeEEEEe
Q 015306 182 EIE---LPVTKVDIIISE 196 (409)
Q Consensus 182 ~~~---~~~~~~DvVvs~ 196 (409)
+.. ..-..+|+||..
T Consensus 189 ~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 189 DTEKLKAEIASSDILVNA 206 (289)
T ss_pred hhhHHHhhhccCCEEEEe
Confidence 321 111457999975
No 432
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.82 E-value=9 Score=37.88 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=32.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~ 162 (409)
+.+.++.+||-|.+|.....-+ +..+.++|+|||+|+ .+...+=
T Consensus 31 L~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 31 LNIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLEL 75 (380)
T ss_pred hCCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHH
Confidence 4578999999997665544444 444567999999999 6665543
No 433
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.53 E-value=7.5 Score=37.44 Aligned_cols=93 Identities=28% Similarity=0.307 Sum_probs=52.0
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc---ccccCCCCceeEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI---EEIELPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~DvV 193 (409)
..++.+||-.|+|. |.++..+++ .|..+|++++.++ -.+.+++ .+....+.....+. ... .+.+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEE
Confidence 35778888887754 556666676 5665788887776 5555443 23321111111111 111 223579999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+... + . ........+.|+++|.++
T Consensus 236 ld~~-g----~----~~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 236 LEMS-G----N----PKAIEQGLKALTPGGRVS 259 (341)
T ss_pred EECC-C----C----HHHHHHHHHHhccCCEEE
Confidence 8521 1 1 123444557889999887
No 434
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.48 E-value=14 Score=34.79 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (409)
..+++||-=||-+| .++..++++|+ +++-+--.. -++...+.+.+.+-.+++.++++|+.+.. ..
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 47889999999998 56777778887 444444444 55555444444433336999999998864 12
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-+..|++|.|.
T Consensus 89 fg~vDvLVNNA 99 (282)
T KOG1205|consen 89 FGRVDVLVNNA 99 (282)
T ss_pred cCCCCEEEecC
Confidence 47899999974
No 435
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=74.47 E-value=17 Score=28.72 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=44.4
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEEEEecccccc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISEWMGYFL 202 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~DvVvs~~~~~~l 202 (409)
+|| +-||+|..+-.+++. .++.+..+|++ +++......++.. ....+|+|+..
T Consensus 3 kIL-lvCg~G~STSlla~k----------------~k~~~~e~gi~--~~i~a~~~~e~~~~~~~~~~DvIll~------ 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK----------------TTEYLKEQGKD--IEVDAITATEGEKAIAAAEYDLYLVS------ 57 (104)
T ss_pred EEE-EECCCchHHHHHHHH----------------HHHHHHHCCCc--eEEEEecHHHHHHhhccCCCCEEEEC------
Confidence 455 569998866655553 45666777875 7777777776642 23469999973
Q ss_pred cChhHHHHHHHHHHhcccCCe
Q 015306 203 LFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG 223 (409)
+.+.-.+..+...+.+.|
T Consensus 58 ---PQi~~~~~~i~~~~~~~~ 75 (104)
T PRK09590 58 ---PQTKMYFKQFEEAGAKVG 75 (104)
T ss_pred ---hHHHHHHHHHHHHhhhcC
Confidence 234444555555555544
No 436
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=74.40 E-value=10 Score=29.47 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=35.0
Q ss_pred EcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 129 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 129 lGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
+-||+|.-+-.+++ .+++.+..+|++ +++...++.+..-....+|+|+..
T Consensus 4 ~~Cg~G~sTS~~~~----------------ki~~~~~~~~~~--~~v~~~~~~~~~~~~~~~Diil~~ 53 (96)
T cd05564 4 LVCSAGMSTSILVK----------------KMKKAAEKRGID--AEIEAVPESELEEYIDDADVVLLG 53 (96)
T ss_pred EEcCCCchHHHHHH----------------HHHHHHHHCCCc--eEEEEecHHHHHHhcCCCCEEEEC
Confidence 45888876554444 456777778875 788888887765334679999974
No 437
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.38 E-value=15 Score=36.28 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-H-HHHHHHHHHHcCCCCcEEEEE-cccccccCCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-M-ANMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~-~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~DvVvs 195 (409)
.++.+||-.|+|. |.++..+|+ .|+ +|++++.++ . .+.+++ .|.. .++. .+...+.-..+.+|+|+-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEE
Confidence 4788999998864 666677777 576 789998765 3 444432 3432 1221 111111100135898884
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
. . +. ...+....+.|+++|.++
T Consensus 249 ~-~-------G~-~~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 249 T-V-------SA-EHALLPLFSLLKVSGKLV 270 (375)
T ss_pred C-C-------Cc-HHHHHHHHHhhcCCCEEE
Confidence 2 1 11 123444557899999987
No 438
>PRK06197 short chain dehydrogenase; Provisional
Probab=74.22 E-value=19 Score=34.12 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|+..| .++..+++.|+ +|+.+.-++ ..+.+.+.+....-..++.++.+|+.+... .
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 46789998887654 23444455676 788888776 554444434322112358889999877530 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 93 ~~~iD~li~nA 103 (306)
T PRK06197 93 YPRIDLLINNA 103 (306)
T ss_pred CCCCCEEEECC
Confidence 24689999864
No 439
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=74.17 E-value=20 Score=33.78 Aligned_cols=91 Identities=24% Similarity=0.209 Sum_probs=50.7
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC---CcEEEEEcccccccCCCCceeEEEEecc
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
+|+-||+|. +.++..+++.|. +|+.++.++ .++..++ .++. ........-..+... ...+|+|+...-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNE----NGLRLEDGEITVPVLAADDPAE-LGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHH----cCCcccCCceeecccCCCChhH-cCCCCEEEEecc
Confidence 588899986 345666666665 899999866 5544433 2321 111100000111111 267899987421
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
......++..+...+.++..++.
T Consensus 76 ------~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 76 ------AYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ------cccHHHHHHHHhhhcCCCCEEEE
Confidence 12456677777777877766653
No 440
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.07 E-value=12 Score=39.03 Aligned_cols=78 Identities=18% Similarity=0.139 Sum_probs=48.2
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHH----HHcCCCEEEEEecHH-HHHHHHHHHHHc-----C--CCCcEEEEEccccccc
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFC----AKAGAAHVYAVECSQ-MANMAKQIVEAN-----G--FSNVITVLKGKIEEIE 184 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~l----a~~g~~~V~~vD~s~-~~~~a~~~~~~~-----~--~~~~i~~~~~d~~~~~ 184 (409)
......+++||-.|+. |.++..+ ++.|+ +|++++-+. .+....+.+... + ...++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 3445678899988875 4444444 44565 899988877 554443333221 1 1135889999998753
Q ss_pred C---CCCceeEEEEe
Q 015306 185 L---PVTKVDIIISE 196 (409)
Q Consensus 185 ~---~~~~~DvVvs~ 196 (409)
. .-+.+|+||+.
T Consensus 152 sI~~aLggiDiVVn~ 166 (576)
T PLN03209 152 QIGPALGNASVVICC 166 (576)
T ss_pred HHHHHhcCCCEEEEc
Confidence 1 12568999875
No 441
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=74.07 E-value=16 Score=34.97 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=53.6
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
...++.+||-.|+|. |..+..+++ .|+ +|++++.++ -.+.+++ .|....+.....+..........+|+++.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~d~vi~ 234 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQELGGAKLILA 234 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhcCCCCEEEE
Confidence 567788999999654 555666666 566 799999988 7777654 23321111111111110011135898884
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. + . ...+....+.|+++|.++
T Consensus 235 ~~-g----~----~~~~~~~~~~l~~~G~~v 256 (333)
T cd08296 235 TA-P----N----AKAISALVGGLAPRGKLL 256 (333)
T ss_pred CC-C----c----hHHHHHHHHHcccCCEEE
Confidence 21 1 1 123444567889999887
No 442
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=73.93 E-value=22 Score=36.58 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCChHHHHHHH-c--C--CCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEccccc-ccC-CCCceeE
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-A--G--AAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEE-IEL-PVTKVDI 192 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~--g--~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~-~~~-~~~~~Dv 192 (409)
++..|.|..||+|.+.....+ . | ...++|-|... +...++.+..-++.. +......+|... ... ...+||+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 567899999999988765544 1 2 24799999999 999999887665543 223333343322 111 2356999
Q ss_pred EEEecc
Q 015306 193 IISEWM 198 (409)
Q Consensus 193 Vvs~~~ 198 (409)
|++++.
T Consensus 297 v~~NpP 302 (501)
T TIGR00497 297 VVSNPP 302 (501)
T ss_pred EeecCC
Confidence 999863
No 443
>PRK08339 short chain dehydrogenase; Provisional
Probab=73.83 E-value=17 Score=33.64 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C----CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----PV 187 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~ 187 (409)
..++++|-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+.... ..++.++.+|+.+.. + ..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 36789999998876 34556666777 899999887 6655555443321 234888899987743 0 12
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
+.+|++|.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 5689998763
No 444
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.82 E-value=9.2 Score=37.22 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecH
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (409)
...+||-+|||. | .++..|++.|..+++.+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456899999994 3 56777888899999999986
No 445
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.72 E-value=11 Score=32.74 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=24.6
Q ss_pred EEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH
Q 015306 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ 155 (409)
Q Consensus 125 ~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~ 155 (409)
+|+-+|||. | ..+..+++.|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 488899995 4 567778888998999998863
No 446
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=73.68 E-value=12 Score=37.98 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=50.3
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...|++|+-+|+|. |......++ .|+ +|+.+|.++ ....+.. .| +++. ++.++. ..+|+|+.-
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~----~G----~~~~--~leell---~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAM----EG----YQVV--TLEDVV---ETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHh----cC----ceec--cHHHHH---hcCCEEEEC
Confidence 46789999999996 322222223 566 899999887 4433322 23 2222 333332 578999973
Q ss_pred cccccccChhHHHHHH-HHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (409)
. +. ..++ ......+|||++++-
T Consensus 317 t--------Gt-~~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 317 T--------GN-KDIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred C--------Cc-ccccCHHHHhccCCCcEEEE
Confidence 2 11 1222 345578999999884
No 447
>PRK05867 short chain dehydrogenase; Provisional
Probab=73.64 E-value=16 Score=33.37 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++...+.+...+ .++.++.+|+.+..- .
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35789999998776 34555556676 899999888 6666655555443 357888888876430 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 25789999864
No 448
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=73.40 E-value=5.3 Score=38.38 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=56.2
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc--CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (409)
....++.+||..|+|. |..+..+|+ .|. +|+++..++ ..+.+++. +....+.....+..+ +. .+...+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 4567888999998764 667777777 455 789998777 77766442 222112222111111 11 2235699
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++... .. ...+..+.+.|+++|.++
T Consensus 230 ~vld~~-----g~----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 230 VVIDAT-----GN----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred EEEECC-----CC----HHHHHHHHHHHhcCCEEE
Confidence 998631 11 123455667889999877
No 449
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=73.38 E-value=9 Score=36.71 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=50.9
Q ss_pred CCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCC-----CcEEEEEcccccccCCCCceeEEEE
Q 015306 123 DKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFS-----NVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 123 ~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..+|+-||+|. |.++..+++.|. .|+.+.-++. + ....+++. ....+....+....-..+.+|+|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~-~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY-E----AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH-H----HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 35799999996 567777777775 7877776551 1 12333321 1011110001111111257899986
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..-. .....++..+..++++++.+++
T Consensus 79 avK~------~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 79 GLKT------TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EecC------CChHhHHHHHhhhcCCCCEEEE
Confidence 3211 1234566777788888887763
No 450
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=73.28 E-value=8.5 Score=36.93 Aligned_cols=92 Identities=25% Similarity=0.299 Sum_probs=52.8
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc---cccc--CCCCce
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI---EEIE--LPVTKV 190 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~--~~~~~~ 190 (409)
...++.+||-.|+|. |.++..+++ .|..+|++++.++ ..+.+++ .+.. .++..+- ..+. .+...+
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHhCCCCC
Confidence 356788999998654 444445555 4646899998888 7666543 3432 1222111 1111 122469
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+|+... + . ...+....+.|+++|.++
T Consensus 237 dvvld~~-g----~----~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 237 DAVIDFV-G----S----DETLALAAKLLAKGGRYV 263 (340)
T ss_pred CEEEEcC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 9998521 1 1 123455567889999987
No 451
>PRK07677 short chain dehydrogenase; Provisional
Probab=73.00 E-value=18 Score=33.08 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CCC
Q 015306 123 DKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PVT 188 (409)
Q Consensus 123 ~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~ 188 (409)
++++|-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++.+|+.+... ..+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 467898998776 34445556677 899999887 6665555554333 458889898866420 124
Q ss_pred ceeEEEEec
Q 015306 189 KVDIIISEW 197 (409)
Q Consensus 189 ~~DvVvs~~ 197 (409)
..|+||.+.
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 689999764
No 452
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=72.98 E-value=14 Score=34.72 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecH
Q 015306 121 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (409)
..+.+|+-+|||. | ..+..|++.|..+++.+|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567899999994 4 56777888898899999976
No 453
>PRK07806 short chain dehydrogenase; Provisional
Probab=72.79 E-value=57 Score=29.41 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (409)
..+++||-.|++.| .++..+++.|. +|+++.-+. ..+.+...+...+ .++.++.+|+.+... .
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35678999997554 23334444565 788876542 3333333333322 347888889876431 0
Q ss_pred -CCceeEEEEeccccccc----------ChhHHHHHHHHHHhcccCCeEEE
Q 015306 187 -VTKVDIIISEWMGYFLL----------FENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 -~~~~DvVvs~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+.+|+||.+.-..... +......+++.+.+.++.+|.++
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv 131 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVV 131 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEE
Confidence 14689888753111000 00112355666666666666655
No 454
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=72.58 E-value=20 Score=34.93 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.++ ....+.+ ..|... .+...+...+......+|+|+-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALE---HLGADD--YLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH---hcCCcE--EecCCChHHHHHhcCCCcEEEEC
Confidence 35788999887754 566667777 566 688887776 5444332 234321 11111111111011358888742
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+ . ...+....+.|+++|+++.
T Consensus 252 -~g----~----~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 252 -VP----V----FHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred -CC----c----hHHHHHHHHHhccCCEEEE
Confidence 11 1 1234445578999998873
No 455
>PRK06172 short chain dehydrogenase; Provisional
Probab=72.51 E-value=19 Score=32.78 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|++++-++ -++.+.+.+...+ .++.++.+|+.+.. + .
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35789999998665 33444555666 799999887 6665555554433 45888999987642 0 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+++|+|+.+.
T Consensus 82 ~g~id~li~~a 92 (253)
T PRK06172 82 YGRLDYAFNNA 92 (253)
T ss_pred hCCCCEEEECC
Confidence 24689999864
No 456
>PRK07062 short chain dehydrogenase; Provisional
Probab=72.33 E-value=19 Score=33.10 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..++++|-.|++.| .++..+++.|+ +|++++.++ -++.+.+.+....-..++.++..|+.+..- .
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 35789999998776 34445555676 799999887 666555544433222357788888876430 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|++|.+.
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 25689998864
No 457
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=72.28 E-value=22 Score=38.32 Aligned_cols=98 Identities=19% Similarity=0.102 Sum_probs=62.9
Q ss_pred CEEEEEcCCCC--hHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHH-------cC-C--------CCcEEEEEcccccc
Q 015306 124 KVVLDVGAGTG--ILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEA-------NG-F--------SNVITVLKGKIEEI 183 (409)
Q Consensus 124 ~~VLDlGcG~G--~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~ 183 (409)
++|.-||+|+= .++..++ ..|. .|+.+|.++ .++.+.+.+.. .+ + ..+|++. .|...
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 381 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRG- 381 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHH-
Confidence 57999999982 4444555 4666 899999999 88877665432 11 1 1234433 23322
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
-..+|+|+=.. ......-..++..+.+.++|+.++.-++.+
T Consensus 382 ---~~~adlViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~ 422 (699)
T TIGR02440 382 ---FKDVDIVIEAV----FEDLALKHQMVKDIEQECAAHTIFASNTSS 422 (699)
T ss_pred ---hccCCEEEEec----cccHHHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence 25789888432 334455678889999999999887655433
No 458
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=72.23 E-value=13 Score=33.96 Aligned_cols=64 Identities=13% Similarity=0.229 Sum_probs=44.1
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHH-HHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEe
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANM-AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~-a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs~ 196 (409)
+++-+|||. +.++..|.+.|. .|+.+|.++ .++. +.... ....+++|..+.. ..-..+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 577888886 345555556666 899999999 6554 22221 2788889987754 334789999984
No 459
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=71.72 E-value=12 Score=34.70 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=46.6
Q ss_pred HHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHH
Q 015306 136 LSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLY 213 (409)
Q Consensus 136 l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~ 213 (409)
+++.+.+.| ..+|+|+|.++ .++.|.+ .|+.+ -...+.+.+ ..+|+||... .......++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~---~~~~~~~~~----~~~Dlvvlav------P~~~~~~~l~ 63 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGIID---EASTDIEAV----EDADLVVLAV------PVSAIEDVLE 63 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSS---EEESHHHHG----GCCSEEEE-S-------HHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCee---eccCCHhHh----cCCCEEEEcC------CHHHHHHHHH
Confidence 356677776 56999999999 8777654 35433 122222211 5679998632 2255678888
Q ss_pred HHHhcccCCeEEE
Q 015306 214 ARDKWLVDDGIVL 226 (409)
Q Consensus 214 ~~~~~LkpgG~li 226 (409)
.+...+++|+.+.
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 9989999988776
No 460
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=71.48 E-value=26 Score=36.09 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCC---------CCcEEEEEccccc
Q 015306 122 KDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF---------SNVITVLKGKIEE 182 (409)
Q Consensus 122 ~~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~ 182 (409)
+-++|--||+|+ ..++..+++.|. .|+.+|.++ .++.+.+.+.. .|. ..++++. .+..+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~ 81 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLHA 81 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHHH
Confidence 445789999996 256667777776 899999999 88776544321 121 0123332 23332
Q ss_pred ccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 183 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 183 ~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ ...|+|+... .........++..+...++|+.++.-+
T Consensus 82 l----~~aDlVIEav----~E~~~vK~~vf~~l~~~~~~~~Ilasn 119 (503)
T TIGR02279 82 L----ADAGLVIEAI----VENLEVKKALFAQLEELCPADTIIASN 119 (503)
T ss_pred h----CCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence 2 4689998632 223344456677777888888776533
No 461
>PRK09291 short chain dehydrogenase; Provisional
Probab=71.43 E-value=19 Score=32.75 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCCh---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEE
Q 015306 123 DKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (409)
Q Consensus 123 ~~~VLDlGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVv 194 (409)
+++||-.|++.|+ ++..+++.|+ +|+++.-++ ............+. .+.++.+|+.+.. .-...+|+|+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 3578988886542 2334445565 888888776 55555444444332 3888888887643 1124799999
Q ss_pred Ee
Q 015306 195 SE 196 (409)
Q Consensus 195 s~ 196 (409)
.+
T Consensus 79 ~~ 80 (257)
T PRK09291 79 NN 80 (257)
T ss_pred EC
Confidence 85
No 462
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=71.38 E-value=21 Score=32.58 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
.++++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 46889999997664 23344455676 899999887 6655555554443 348888988876430 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+++|+|+...
T Consensus 86 ~~~id~vi~~a 96 (256)
T PRK06124 86 HGRLDILVNNV 96 (256)
T ss_pred cCCCCEEEECC
Confidence 25689998753
No 463
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=71.26 E-value=7.7 Score=32.16 Aligned_cols=71 Identities=25% Similarity=0.289 Sum_probs=43.8
Q ss_pred CCCCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...+++||-||+|. | ..+..++..|+.+|+.+.-+. -++...+.+.. ..+.++.. .++.-....+|+|++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~----~~~~~~~~--~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG----VNIEAIPL--EDLEEALQEADIVINA 82 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG----CSEEEEEG--GGHCHHHHTESEEEE-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc----cccceeeH--HHHHHHHhhCCeEEEe
Confidence 45789999999975 2 334445557898999999887 44444433311 22555543 3333112679999985
No 464
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.22 E-value=24 Score=32.17 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|. +|++++.++ -.+.+.+.+...+ .++.++..|+.+... .
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 35688999998765 34455556676 899999888 6655555554333 357889999876421 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-+.+|+|+...
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 25689999864
No 465
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=71.14 E-value=9.3 Score=36.00 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE 165 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~ 165 (409)
...+.+|.-+|+|.....-++++.++ +|.+||+++ .+...+-.+.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHH
Confidence 46788999999999878888888866 999999999 7665554443
No 466
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=71.01 E-value=12 Score=36.68 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=56.1
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--cccc-c-cCCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~ 190 (409)
....++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|....+..... +..+ + .+..+.+
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCC
Confidence 4567889999998764 566666677 6776899999998 7777654 343211111111 1111 0 0112469
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC-eEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (409)
|+|+-. .+ . ...+....+.|+++ |+++
T Consensus 258 d~vid~-~g----~----~~~~~~a~~~l~~~~G~~v 285 (368)
T cd08300 258 DYTFEC-IG----N----VKVMRAALEACHKGWGTSV 285 (368)
T ss_pred cEEEEC-CC----C----hHHHHHHHHhhccCCCeEE
Confidence 999852 11 1 12344445788887 8876
No 467
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=70.90 E-value=12 Score=29.27 Aligned_cols=71 Identities=18% Similarity=0.076 Sum_probs=46.3
Q ss_pred EEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccCh
Q 015306 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 205 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~ 205 (409)
|| +-||.|..+-.+++ ..++.++.+|++ +++......+++...+.+|+|+..+
T Consensus 3 Il-l~C~~GaSSs~la~----------------km~~~a~~~gi~--~~i~a~~~~e~~~~~~~~Dvill~P-------- 55 (99)
T cd05565 3 VL-VLCAGGGTSGLLAN----------------ALNKGAKERGVP--LEAAAGAYGSHYDMIPDYDLVILAP-------- 55 (99)
T ss_pred EE-EECCCCCCHHHHHH----------------HHHHHHHHCCCc--EEEEEeeHHHHHHhccCCCEEEEcC--------
Confidence 44 55788865555544 356667778875 7888888877664446799998743
Q ss_pred hHHHHHHHHHHhcccCCeE
Q 015306 206 NMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 206 ~~~~~~l~~~~~~LkpgG~ 224 (409)
...-.++.+...+.+-|+
T Consensus 56 -Qv~~~~~~i~~~~~~~~i 73 (99)
T cd05565 56 -QMASYYDELKKDTDRLGI 73 (99)
T ss_pred -hHHHHHHHHHHHhhhcCC
Confidence 344555666666666654
No 468
>PRK08303 short chain dehydrogenase; Provisional
Probab=70.70 E-value=20 Score=34.11 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecH----------H-HHHHHHHHHHHcCCCCcEEEEEcccccccC-
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS----------Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s----------~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 185 (409)
..++++|-.|++.| .++..+++.|+ +|+.++.+ + .++.+.+.+...+ .++.++.+|+.+..-
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQV 82 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHH
Confidence 46789999998876 33445555676 78888765 2 2333333344333 347788889876430
Q ss_pred ---------CCCceeEEEEec
Q 015306 186 ---------PVTKVDIIISEW 197 (409)
Q Consensus 186 ---------~~~~~DvVvs~~ 197 (409)
..++.|++|.+.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 125789999875
No 469
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=70.60 E-value=11 Score=36.80 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--cccc-c-cCCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~ 190 (409)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.++ ..+.+++ .|....+..... +..+ + ....+.+
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHhCCCC
Confidence 4567899999998753 455666666 5776899999998 7777754 343211111110 1111 1 1122468
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
|+++-. .+ . ...+....+.+++| |.++.
T Consensus 259 d~vid~-~G----~----~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 259 DYSFEC-TG----N----IDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred CEEEEC-CC----C----hHHHHHHHHHhhcCCCEEEE
Confidence 988742 11 1 12334445677886 88763
No 470
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=70.56 E-value=18 Score=34.11 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=53.2
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+|+-+|.|- |.++..+.+.|. ..+++.|.+. .++.+.+. |+.+. ...+.. ......+|+||....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d~---~~~~~~--~~~~~~aD~VivavP- 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVIDE---LTVAGL--AEAAAEADLVIVAVP- 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Ccccc---cccchh--hhhcccCCEEEEecc-
Confidence 4788888775 566777777764 3588999888 66555432 22110 001110 111256899986532
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......+++++...|++|..+.
T Consensus 74 -----i~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 74 -----IEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred -----HHHHHHHHHHhcccCCCCCEEE
Confidence 1456678888888888887765
No 471
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=70.42 E-value=34 Score=32.54 Aligned_cols=93 Identities=20% Similarity=0.172 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEE
Q 015306 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvV 193 (409)
....++.+||-+|+| .|..+..+++ .|. +|++++.++ ..+.+++. +.. .++...-.... ...+.+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCEE
Confidence 446778899999987 5666677777 465 799999888 77766432 221 11111111100 012468998
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... .. ...+....+.|+++|.++.
T Consensus 230 i~~~-----~~----~~~~~~~~~~l~~~G~~i~ 254 (330)
T cd08245 230 LVTV-----VS----GAAAEAALGGLRRGGRIVL 254 (330)
T ss_pred EECC-----Cc----HHHHHHHHHhcccCCEEEE
Confidence 8521 11 1234555688999998873
No 472
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=70.11 E-value=13 Score=31.54 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=55.2
Q ss_pred EEEEEcCCCChH--HHHHHHcCCCEEEEEecHH-HHHHHHHHHHH------cCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 125 VVLDVGAGTGIL--SLFCAKAGAAHVYAVECSQ-MANMAKQIVEA------NGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 125 ~VLDlGcG~G~l--~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~------~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
+|.-+|+|.+.. +..++..|. +|+-...++ .++..++.-.. ..++.++.+ ..|+.+.- ...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---CcccEEEe
Confidence 467788888644 445555664 899999998 77666554321 111233433 34444322 56899987
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
... ....+.+++.+...|+++-.++..
T Consensus 76 avP------s~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 76 AVP------SQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -S-------GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ccc------HHHHHHHHHHHhhccCCCCEEEEe
Confidence 432 134568888999999888777643
No 473
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=70.01 E-value=7.2 Score=39.09 Aligned_cols=108 Identities=14% Similarity=0.006 Sum_probs=58.9
Q ss_pred CCCCCCEEEEEcCCCC--hHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cC-CCCcee
Q 015306 119 FLFKDKVVLDVGAGTG--ILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--EL-PVTKVD 191 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G--~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~-~~~~~D 191 (409)
.......++|+|.|.| .++....-.+ ...++.||.+. |......+.....-.+.+.+...-+.+. +. ....||
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCccccee
Confidence 3345567888888876 3333333333 56899999999 9888877776410001111111112222 22 235699
Q ss_pred EEEEecccccccC-hhHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLF-ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|++....+.+.. .........-+.+..++|+.++
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lV 312 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLV 312 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEE
Confidence 9999644333322 2222333344566778888765
No 474
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=69.95 E-value=12 Score=36.57 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--ccc-cc-CCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEE-IE-LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~-~~-~~~~~~ 190 (409)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.++ ..+.+++ .|....+.....+ ..+ +. +..+.+
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCC
Confidence 4567889999998753 455566666 6777899999988 7777754 2332111111111 011 10 112469
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
|+|+-. .+ . ...+....+.|+++ |.++.
T Consensus 256 d~vid~-~g----~----~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 256 DYSFEC-TG----N----ADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred CEEEEC-CC----C----hHHHHHHHHhcccCCCEEEE
Confidence 999842 11 1 12344455778775 88763
No 475
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=69.84 E-value=20 Score=32.52 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=46.5
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------- 184 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 184 (409)
..++++||-.|+..| .++..+++.|+ +|++++.++ .++...+.+...+. .++.++..|+....
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence 357889999996554 22334445566 899999887 66555555544332 34667777764211
Q ss_pred -CCCCceeEEEEec
Q 015306 185 -LPVTKVDIIISEW 197 (409)
Q Consensus 185 -~~~~~~DvVvs~~ 197 (409)
-..+++|+||...
T Consensus 87 ~~~~~~id~vi~~A 100 (247)
T PRK08945 87 EEQFGRLDGVLHNA 100 (247)
T ss_pred HHHhCCCCEEEECC
Confidence 0125689998753
No 476
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=69.81 E-value=15 Score=32.68 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-H-------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 015306 122 KDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-M-------------------ANMAKQIVEANGFSNVITVLKGK 179 (409)
Q Consensus 122 ~~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~-------------------~~~a~~~~~~~~~~~~i~~~~~d 179 (409)
...+||-+|||. +..+..|+..|..+++.+|.+. - ++.+++.+.+..-.-+++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 456899999986 2456667778999999998753 1 23334444433322235555544
Q ss_pred cccccCC-CCceeEEEEe
Q 015306 180 IEEIELP-VTKVDIIISE 196 (409)
Q Consensus 180 ~~~~~~~-~~~~DvVvs~ 196 (409)
+.+.... -..||+|++.
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 4321100 1579999974
No 477
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.74 E-value=5 Score=35.04 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=48.1
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
....+++|.-||+|. |......++ .|. +|+++|.+. .... ....+ + ...++.++- ...|+|+.
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~----~~~~~----~--~~~~l~ell---~~aDiv~~ 97 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEG----ADEFG----V--EYVSLDELL---AQADIVSL 97 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHH----HHHTT----E--EESSHHHHH---HH-SEEEE
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhh----ccccc----c--eeeehhhhc---chhhhhhh
Confidence 345789999999875 332222233 566 999999988 4441 11111 3 233555543 67999997
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.... .+....-+=.+....+|+|.++|
T Consensus 98 ~~pl----t~~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 98 HLPL----TPETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp -SSS----STTTTTSBSHHHHHTSTTTEEEE
T ss_pred hhcc----ccccceeeeeeeeeccccceEEE
Confidence 5321 11111111123347789998887
No 478
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=69.46 E-value=16 Score=30.31 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=23.4
Q ss_pred EEEEEcCCC-C-hHHHHHHHcCCCEEEEEecH
Q 015306 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (409)
Q Consensus 125 ~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (409)
+||-+|||. | .++..|++.|..+++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 478899984 4 45677778899899999865
No 479
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.35 E-value=21 Score=32.22 Aligned_cols=68 Identities=31% Similarity=0.330 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHH----cCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEccccccc----------
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE---------- 184 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~----~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (409)
...+.||-.||..|.++..+++ .|. .|+++--+- |...+.+ .| +.....|+.+..
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~----~g----l~~~kLDV~~~~~V~~v~~evr 75 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQ----FG----LKPYKLDVSKPEEVVTVSGEVR 75 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHh----hC----CeeEEeccCChHHHHHHHHHHh
Confidence 4567899999999988777766 355 888887654 6665543 23 455666665432
Q ss_pred -CCCCceeEEEEec
Q 015306 185 -LPVTKVDIIISEW 197 (409)
Q Consensus 185 -~~~~~~DvVvs~~ 197 (409)
+++++.|+++-+.
T Consensus 76 ~~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 76 ANPDGKLDLLYNNA 89 (289)
T ss_pred hCCCCceEEEEcCC
Confidence 4578999999763
No 480
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=69.20 E-value=28 Score=35.95 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=59.5
Q ss_pred CCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCC---------CCcEEEEEcccccc
Q 015306 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF---------SNVITVLKGKIEEI 183 (409)
Q Consensus 123 ~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~ 183 (409)
-++|--||+|+ | .++..++..|. .|+..|.++ .++.+.+.+.. .|. -.++++. .+..++
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~~ 84 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALADL 84 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh
Confidence 35788999986 3 56667777777 899999999 88876554432 121 0124433 233322
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
...|+|+-.. ......-..++..+..+++|+.++.
T Consensus 85 ----~~aDlViEav----~E~~~vK~~vf~~l~~~~~~~aila 119 (507)
T PRK08268 85 ----ADCDLVVEAI----VERLDVKQALFAQLEAIVSPDCILA 119 (507)
T ss_pred ----CCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEE
Confidence 4689998632 3333444566677778788887775
No 481
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=69.19 E-value=21 Score=32.76 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=46.4
Q ss_pred EEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----CCCce
Q 015306 125 VVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PVTKV 190 (409)
Q Consensus 125 ~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~~ 190 (409)
+||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .+.++.+|+.+.. + ..+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 5888887765 34555566676 799999888 6666555554432 4788889987642 0 12578
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|++|.+.
T Consensus 78 d~li~na 84 (259)
T PRK08340 78 DALVWNA 84 (259)
T ss_pred CEEEECC
Confidence 9999763
No 482
>PRK12937 short chain dehydrogenase; Provisional
Probab=69.10 E-value=58 Score=29.22 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEec-HH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVEC-SQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~-s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 185 (409)
.++++||-.|++.| .++..+++.|+ +|+.+.. ++ ..+...+.+...+ .++.++..|+.+.. +
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 35678999998655 33444555676 5655543 23 3333333343332 45888899987643 1
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..++.|+++...
T Consensus 80 ~~~~id~vi~~a 91 (245)
T PRK12937 80 AFGRIDVLVNNA 91 (245)
T ss_pred HcCCCCEEEECC
Confidence 124689999853
No 483
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=69.03 E-value=14 Score=35.03 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=49.0
Q ss_pred EEEEEcCCCC--hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcc-------cccccCCCCceeEEEE
Q 015306 125 VVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK-------IEEIELPVTKVDIIIS 195 (409)
Q Consensus 125 ~VLDlGcG~G--~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d-------~~~~~~~~~~~DvVvs 195 (409)
+|+-+|+|.- .++..+++.|. .|+.++..+.++..++ .++. +.-..++ ..+.......+|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVRPKRAKALRE----RGLV--IRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEecHHHHHHHHh----CCeE--EEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 5888899873 45666677765 7999988225444332 2321 1111001 1111111267898886
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..- ...++.++..+...+.++..++
T Consensus 75 avk------~~~~~~~~~~l~~~~~~~~~ii 99 (305)
T PRK12921 75 AVK------AYQLDAAIPDLKPLVGEDTVII 99 (305)
T ss_pred Eec------ccCHHHHHHHHHhhcCCCCEEE
Confidence 321 1245667777777788777665
No 484
>PRK07035 short chain dehydrogenase; Provisional
Probab=68.99 E-value=26 Score=31.86 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++...+.+...+ .++.++..|+.+..- .
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45678999998876 34445556676 899999887 6655555554433 347778888866430 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-+++|+++...
T Consensus 83 ~~~id~li~~a 93 (252)
T PRK07035 83 HGRLDILVNNA 93 (252)
T ss_pred cCCCCEEEECC
Confidence 24689999754
No 485
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.88 E-value=20 Score=30.67 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=49.6
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
+|-=||+|. ..++..|++.|. .|++.|.++ .++.+.+. + ++. ..+..++. ...|+|++-
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~----g----~~~-~~s~~e~~---~~~dvvi~~----- 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA----G----AEV-ADSPAEAA---EQADVVILC----- 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT----T----EEE-ESSHHHHH---HHBSEEEE------
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh----h----hhh-hhhhhhHh---hcccceEee-----
Confidence 456677764 134444555566 899999998 65554432 2 332 23444432 567999873
Q ss_pred ccChhHHHHHHHH--HHhcccCCeEEE
Q 015306 202 LLFENMLNTVLYA--RDKWLVDDGIVL 226 (409)
Q Consensus 202 l~~~~~~~~~l~~--~~~~LkpgG~li 226 (409)
+........++.. +...|++|.++|
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred cccchhhhhhhhhhHHhhccccceEEE
Confidence 3344566777777 778888888877
No 486
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=68.64 E-value=25 Score=32.37 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ 155 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~ 155 (409)
.+.+||-+|||. | ..+..+++.|..+++.+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 456899999995 4 567778888998999988754
No 487
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.63 E-value=12 Score=36.01 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=54.4
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-cccc--CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D 191 (409)
....++.+||-.|||. |.++..+|+ .|.+.+++++.++ ..+.+++ .|....+.....+. ..+. .+...+|
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~~v~~~~~~~~~~~i~~~~~~~~~d 239 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGATDIVAERGEEAVARVRELTGGVGAD 239 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCceEecCCcccHHHHHHHhcCCCCCC
Confidence 3456777888888764 555666666 6777799999887 5555543 33321111111111 1111 1234689
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++.. .+ . ...+....+.|+++|.++
T Consensus 240 ~il~~-~g----~----~~~~~~~~~~l~~~g~~v 265 (345)
T cd08287 240 AVLEC-VG----T----QESMEQAIAIARPGGRVG 265 (345)
T ss_pred EEEEC-CC----C----HHHHHHHHHhhccCCEEE
Confidence 99852 11 1 234555668889999887
No 488
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.61 E-value=18 Score=35.28 Aligned_cols=61 Identities=25% Similarity=0.423 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEE---EecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYA---VECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~---vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+..+++.|||-|.++.+++. .+...++- +|-.. -+..=++....+. ..++=+..|++++.+
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~--~vi~R~riDI~dLkL 248 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNS--LVIKRIRIDIEDLKL 248 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCc--chhheeEeeHHhcCc
Confidence 36899999999999999998 55556666 77665 4444343333332 336777888888764
No 489
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=68.58 E-value=18 Score=34.36 Aligned_cols=72 Identities=25% Similarity=0.284 Sum_probs=44.1
Q ss_pred EEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH--------------------HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 125 ~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~--------------------~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
+||-||||. | .++..|+..|..+++.+|.+. -++.|.+.+.+..-.-+++.+..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 488999984 3 556677778999999988632 123334444433322346667666655
Q ss_pred ccCC-CCceeEEEEe
Q 015306 183 IELP-VTKVDIIISE 196 (409)
Q Consensus 183 ~~~~-~~~~DvVvs~ 196 (409)
.... -.+||+|++.
T Consensus 81 ~~~~f~~~fdvVi~a 95 (291)
T cd01488 81 KDEEFYRQFNIIICG 95 (291)
T ss_pred hhHHHhcCCCEEEEC
Confidence 3211 2579999973
No 490
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=68.56 E-value=38 Score=31.80 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=44.5
Q ss_pred HHHHHHHhc-cCCCCCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015306 109 SYQNVIYQN-KFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 109 ~~~~~l~~~-~~~~~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (409)
.+...+... .....+++||-+|+|. | ..+..++..|..+|+.++-+. .++...+.+.... .+.+ ..+..+
T Consensus 108 G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~---~~~~-~~~~~~-- 181 (278)
T PRK00258 108 GFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG---KAEL-DLELQE-- 181 (278)
T ss_pred HHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc---ceee-cccchh--
Confidence 455555532 2235678999999863 2 222233446777999999987 5554444433211 1233 111111
Q ss_pred CCCCceeEEEEe
Q 015306 185 LPVTKVDIIISE 196 (409)
Q Consensus 185 ~~~~~~DvVvs~ 196 (409)
. ...+|+||..
T Consensus 182 ~-~~~~DivIna 192 (278)
T PRK00258 182 E-LADFDLIINA 192 (278)
T ss_pred c-cccCCEEEEC
Confidence 1 2579999985
No 491
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.48 E-value=26 Score=36.61 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=41.7
Q ss_pred CEEEEEcCCCChHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEE
Q 015306 124 KVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~----~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVv 194 (409)
.+|+-+|||. .+..+++ .|. .|+.+|.++ .++.+++ .+ ..++.+|..+.. ..-+++|.++
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGI-PLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 4677777765 4444444 444 899999999 8877764 12 678999998754 2236889776
Q ss_pred E
Q 015306 195 S 195 (409)
Q Consensus 195 s 195 (409)
.
T Consensus 487 v 487 (558)
T PRK10669 487 L 487 (558)
T ss_pred E
Confidence 5
No 492
>PRK05876 short chain dehydrogenase; Provisional
Probab=68.43 E-value=26 Score=32.73 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|+++| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45788999998776 34455556677 799999887 6655554454433 347888899876430 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 24689999864
No 493
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=68.37 E-value=39 Score=30.91 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ 155 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~ 155 (409)
...+||-+|||. | ..+..|++.|..+++.+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 456899999984 4 556778888999999998653
No 494
>PRK09242 tropinone reductase; Provisional
Probab=68.35 E-value=27 Score=31.86 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (409)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++...+.+....-..++.++.+|+.+.. -.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35789999998765 34445555676 899998887 66555554443311245888899987632 01
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+++|+|+...
T Consensus 86 ~g~id~li~~a 96 (257)
T PRK09242 86 WDGLHILVNNA 96 (257)
T ss_pred cCCCCEEEECC
Confidence 25789998754
No 495
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=68.16 E-value=9.1 Score=36.85 Aligned_cols=95 Identities=23% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-c-CCCCceeEE
Q 015306 120 LFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-E-LPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~~DvV 193 (409)
..++.+||-.|+| .|..+..+++ .|...|++++.++ ..+.+++. +....+.....+..+ + . .+...+|+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 4577888887765 2455666666 5665689998877 66655442 332111111112111 1 1 123569999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... . . ...+....+.|+++|.++-
T Consensus 235 ld~~----g-~----~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 235 LEMS----G-A----PKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred EECC----C-C----HHHHHHHHHhhcCCCEEEE
Confidence 8521 1 1 1234555688899998873
No 496
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=68.11 E-value=7.8 Score=35.77 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~ 166 (409)
+..+++|+-||+|..++.+.+. ...|+.-|+++ .+...+..++.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHHhc
Confidence 6789999999999999988764 55999999999 88888766654
No 497
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=67.46 E-value=16 Score=31.43 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCC--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 122 KDKVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
++++|.-||.|+= ..++.|...|..-+++.-... ..+.|+ ..|+. ..++.+.. ...|+|+.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~----~~Gf~------v~~~~eAv---~~aDvV~~--- 66 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK----ADGFE------VMSVAEAV---KKADVVML--- 66 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH----HTT-E------CCEHHHHH---HC-SEEEE---
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH----HCCCe------eccHHHHH---hhCCEEEE---
Confidence 5789999999973 334455556774445655544 444444 34542 22333332 56899986
Q ss_pred cccccChhHHHHHH-HHHHhcccCCeEEEccC
Q 015306 199 GYFLLFENMLNTVL-YARDKWLVDDGIVLPDK 229 (409)
Q Consensus 199 ~~~l~~~~~~~~~l-~~~~~~LkpgG~lip~~ 229 (409)
+........+. +.+...|+||-.+++..
T Consensus 67 ---L~PD~~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 67 ---LLPDEVQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp ----S-HHHHHHHHHHHHHHHS-TT-EEEESS
T ss_pred ---eCChHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 22223334454 78889999999988654
No 498
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=67.39 E-value=1.8 Score=37.45 Aligned_cols=41 Identities=24% Similarity=0.164 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (409)
.++.+|+-+|.|. |.-+..++. .|+ +|+.+|..+ .++....
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLES 61 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhc
Confidence 4568999999886 555666666 666 899999988 6655443
No 499
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=67.25 E-value=29 Score=33.08 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=52.2
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-CC-----CCcEEEEEcccccccCCCCceeEEEE
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-GF-----SNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~-----~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
+|.=||+|. +.++..+++.|. .|+.+|.++ .++..++..... .. ...+.+ ..+..+. ...+|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA---LADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH---HhCCCEEEE
Confidence 578888875 345555666665 799999988 666554421000 00 001221 1222211 146899986
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
... ....+.++..+...++++..++..
T Consensus 78 ~v~------~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 78 AVP------SQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred eCC------HHHHHHHHHHHHhhcCCCCEEEEE
Confidence 432 135667777777778887776643
No 500
>PRK08223 hypothetical protein; Validated
Probab=67.19 E-value=18 Score=34.29 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ 155 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~ 155 (409)
...+||-+|||. | ..+..+++.|..+++.+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 456899999995 3 568888899999999888753
Done!