Query 015309
Match_columns 409
No_of_seqs 324 out of 1876
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 8.9E-43 3E-47 344.8 22.2 249 103-392 6-257 (320)
2 3v5u_A Uncharacterized membran 99.6 2.8E-15 9.7E-20 148.0 12.0 136 104-263 166-305 (320)
3 2oar_A Large-conductance mecha 16.0 39 0.0013 29.8 0.6 20 354-373 30-50 (174)
4 2kdc_A Diacylglycerol kinase; 9.5 4.3E+02 0.015 21.5 5.1 47 84-132 37-83 (121)
5 3lae_A UPF0053 protein HI0107; 6.7 2.1E+02 0.0072 21.1 1.8 16 133-148 36-51 (81)
6 3llb_A Uncharacterized protein 6.7 2.2E+02 0.0076 21.1 1.9 16 133-148 36-51 (83)
7 2euc_A Hypothetical protein YF 6.0 1.9E+02 0.0065 23.5 1.2 18 77-94 72-89 (130)
8 1pw4_A Glycerol-3-phosphate tr 5.8 1.5E+03 0.051 20.6 19.5 23 320-342 274-297 (451)
9 1p3q_Q VPS9P, vacuolar protein 5.7 2.4E+02 0.0083 19.8 1.5 23 347-369 28-50 (54)
10 2knc_A Integrin alpha-IIB; tra 5.3 8.3E+02 0.029 17.0 4.7 36 242-277 19-54 (54)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=8.9e-43 Score=344.83 Aligned_cols=249 Identities=18% Similarity=0.180 Sum_probs=212.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhhhHHHHhhc-chhHHHHHHHHHhcCCcceeeehhhhHHHHHHHHH
Q 015309 103 GWVFFLSLLGITPLAERLGYATEQLTFFTG--ATVGGLLNATFG-NATELIISIYALKSGMIRVVQLSLLGSILSNMLLV 179 (409)
Q Consensus 103 ~~vF~~~~laIipla~~l~~a~e~La~~~g--~~vgGll~aa~G-n~pELiisi~Al~~g~~~ia~gsilGSil~NlLLV 179 (409)
...|+.++++++++++++++++|++|+++| +.+.|++++++| |+||+++++.|.++|++|+++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 346889999999999999999999999996 999999999999 69999999999999999999999999999999999
Q ss_pred HHHHhhhccceecccceEEehhhhHHHHHHHHHHHHHHHHHHHHhhccccccCCccccccchHHHHHHHHHHHHHHHHHH
Q 015309 180 LGCAFFCGGLICCKKEQVFNKASAVVNSGLLLMAVMGLVFPAVLHYTHTEVHFGKSELALSRFSSCIMLVAYGAYLFFQL 259 (409)
Q Consensus 180 lG~~~l~ggi~~~~~~~~~~~~~a~~~s~LL~la~~~l~lp~~~~~~~~~~~~~~~~~~lSr~~siiLL~~Yv~Yl~f~l 259 (409)
+|+|++++|++. ++. +. ....+++++.+ ++++ +.+ ++ ++|++|++|+.+|+.|++|++
T Consensus 86 lG~~~li~p~~v-~~~--~~-----~d~~~~l~~~~-~l~~--~~~----------~g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 86 LGLSAIISPIIV-DKN--LQ-----KNILVYLLFVI-FAAV--IGI----------DG-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp HHHHHHHSCBCC-CHH--HH-----HHHHHHHHHHH-HHHH--HTT----------TC-BCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccc-cHH--HH-----HHHHHHHHHHH-HHHH--HHH----------cc-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999864 221 11 12233333332 2222 111 34 999999999999999999999
Q ss_pred HhcccccCCCccccccCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCchhhhHhH
Q 015309 260 RGQTELYVPLSEDENQTGNDADHGGNHDDNEAPEISKWESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVIL 339 (409)
Q Consensus 260 ~th~~~f~~~~e~~~~~~~~~~~~~~~~~~e~~~~s~~~~i~~L~i~~~~i~~~a~~LV~si~~i~~~~gis~~fiGlil 339 (409)
++|++. ++ +++++++.+.|+.+.+++++++++.++++++|++++.+++.+|+|+.++|+++
T Consensus 144 ~~~~~~-----~~--------------~~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltl 204 (320)
T 3v5u_A 144 KNGSAE-----IE--------------ENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTL 204 (320)
T ss_dssp HHTBC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHT
T ss_pred Hhcccc-----cc--------------cccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHH
Confidence 998741 11 11122345778899999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCcchhHHHhhHHHHHHHHHHHhhhccccccce
Q 015309 340 LPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGVCVDYQMVPSNCI 392 (409)
Q Consensus 340 lpivtn~pE~vtAI~~A~kgk~dlAig~aiGSsiq~~Lfvl~v~~~~~p~~~~ 392 (409)
+|++|++||+++++.+++||+.|+|+||++|||+||.++++|+.+.+.|.+..
T Consensus 205 va~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~p~~~~ 257 (320)
T 3v5u_A 205 VAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFMHLPAE 257 (320)
T ss_dssp HHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHSCBCCC
T ss_pred HHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhccccch
Confidence 99999999999999999999999999999999999999999999999887764
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.60 E-value=2.8e-15 Score=148.03 Aligned_cols=136 Identities=18% Similarity=0.255 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CchhhhHHHHhhc-chhHHHHHHHHHhcCCcceeeehhhhHHHHHHHHHH
Q 015309 104 WVFFLSLLGITPLAERLGYATEQLTFFT--GATVGGLLNATFG-NATELIISIYALKSGMIRVVQLSLLGSILSNMLLVL 180 (409)
Q Consensus 104 ~vF~~~~laIipla~~l~~a~e~La~~~--g~~vgGll~aa~G-n~pELiisi~Al~~g~~~ia~gsilGSil~NlLLVl 180 (409)
..++.++++++.++++++++++.+++.+ ++.+.|++++++| |+||+++++.|.++|+.+++.||++|||++|+++++
T Consensus 166 ~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~ 245 (320)
T 3v5u_A 166 VLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGAL 245 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHH
Confidence 4677899999999999999999999998 5999999999999 899999999999999999999999999999999999
Q ss_pred HHHhhhccceecccceEEehhhhHHHHHHHHHHHHHHHHHHHHhhccccccCCccccccchHHHHHHHHHHHH-HHHHHH
Q 015309 181 GCAFFCGGLICCKKEQVFNKASAVVNSGLLLMAVMGLVFPAVLHYTHTEVHFGKSELALSRFSSCIMLVAYGA-YLFFQL 259 (409)
Q Consensus 181 G~~~l~ggi~~~~~~~~~~~~~a~~~s~LL~la~~~l~lp~~~~~~~~~~~~~~~~~~lSr~~siiLL~~Yv~-Yl~f~l 259 (409)
|++.++.|++.+ .+|. ..+++..+ ++.. .+. +++++|++|++++.+|+. |+++.+
T Consensus 246 g~~~li~p~~~~----~~d~-------~~~l~~~~-ll~~-~~~-----------~~~i~~~eG~~ll~~Y~~~y~~~~~ 301 (320)
T 3v5u_A 246 AVGSLFMHLPAE----NVQM-------AVLVIMSL-LLYL-FAK-----------YSKIGRWQGILFLALYIIAIASLRM 301 (320)
T ss_dssp HHHHHHSCBCCC----HHHH-------HHHHHHHH-HHHH-HHH-----------HSCBSHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHhhccccch----HHHH-------HHHHHHHH-HHHH-HHh-----------CCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999987641 1221 12222222 2221 221 468999999999999999 999887
Q ss_pred Hhcc
Q 015309 260 RGQT 263 (409)
Q Consensus 260 ~th~ 263 (409)
+.++
T Consensus 302 ~~~~ 305 (320)
T 3v5u_A 302 GGGS 305 (320)
T ss_dssp SCC-
T ss_pred Hhhc
Confidence 6554
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=15.99 E-value=39 Score=29.76 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=15.3
Q ss_pred HHHHhCC-CcchhHHHhhHHH
Q 015309 354 MFAMKDK-LDISLGVAIGSST 373 (409)
Q Consensus 354 ~~A~kgk-~dlAig~aiGSsi 373 (409)
.++.||+ +|+|+|+++|++-
T Consensus 30 eFi~RGNViDLAVgVIIGaAF 50 (174)
T 2oar_A 30 EFLARGNIVDLAVAVVIGTAF 50 (174)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 3566766 5999999999764
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=9.49 E-value=4.3e+02 Score=21.48 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=33.6
Q ss_pred HhhhHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015309 84 LLMPFGPLAIMVHNLTGHKGWVFFLSLLGITPLAERLGYATEQLTFFTG 132 (409)
Q Consensus 84 ~Ll~~vPl~i~~~~~~~~~~~vF~~~~laIipla~~l~~a~e~La~~~g 132 (409)
...+.+|+++..+... ..|.+.+..+.++..+|++..+.|.+..+.+
T Consensus 37 ~~~~~i~~~~~l~~s~--~e~~~li~~i~lVl~~EllNTAIE~vvD~v~ 83 (121)
T 2kdc_A 37 AVLLAVVIACWLDVDA--ITRVLLISSVMLVMIVEILNSAIEAVVDRIG 83 (121)
T ss_dssp HHHHHHHHHHHCCCCC--SHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455667777655332 3455666667788889999999999988875
No 5
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=6.74 E-value=2.1e+02 Score=21.10 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=14.2
Q ss_pred chhhhHHHHhhcchhH
Q 015309 133 ATVGGLLNATFGNATE 148 (409)
Q Consensus 133 ~~vgGll~aa~Gn~pE 148 (409)
+|+||++.--+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 36 RTFNGLILEHLEEIPD 51 (81)
T ss_dssp SBHHHHHHHHCSSCCC
T ss_pred ccHHHHHHHHhCCCCC
Confidence 6999999999998886
No 6
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=6.72 E-value=2.2e+02 Score=21.09 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=14.2
Q ss_pred chhhhHHHHhhcchhH
Q 015309 133 ATVGGLLNATFGNATE 148 (409)
Q Consensus 133 ~~vgGll~aa~Gn~pE 148 (409)
+|+||++..-+|.+|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPK 51 (83)
T ss_dssp SBHHHHHHHHHSSCCC
T ss_pred cCHHHHHHHHhCcCCC
Confidence 6999999999998885
No 7
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=5.99 E-value=1.9e+02 Score=23.50 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=15.2
Q ss_pred HHhhhHHHhhhHHHHHHH
Q 015309 77 VFSNKLNLLMPFGPLAIM 94 (409)
Q Consensus 77 ~~~s~~n~Ll~~vPl~i~ 94 (409)
.+++|++.|+|||-.-+.
T Consensus 72 ~LssYL~~LlpfvT~DM~ 89 (130)
T 2euc_A 72 KLSGYLSTLLPYVTADMF 89 (130)
T ss_dssp HHHHHHHHHGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999876654
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=5.80 E-value=1.5e+03 Score=20.58 Aligned_cols=23 Identities=4% Similarity=-0.236 Sum_probs=14.9
Q ss_pred hHHHHhhc-cCCCchhhhHhHHhh
Q 015309 320 AIEGASAS-WNIPISFISVILLPI 342 (409)
Q Consensus 320 si~~i~~~-~gis~~fiGlillpi 342 (409)
-.....++ .|.++...|......
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 33444444 899999888765544
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=5.68 E-value=2.4e+02 Score=19.84 Aligned_cols=23 Identities=4% Similarity=0.138 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhCCCcchhHHHh
Q 015309 347 AEHASAIMFAMKDKLDISLGVAI 369 (409)
Q Consensus 347 pE~vtAI~~A~kgk~dlAig~ai 369 (409)
+|.+-+|..+.+|+.|.+|..++
T Consensus 28 ~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 28 PSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 67888889999999988886554
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.31 E-value=8.3e+02 Score=17.02 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCccccccCC
Q 015309 242 FSSCIMLVAYGAYLFFQLRGQTELYVPLSEDENQTG 277 (409)
Q Consensus 242 ~~siiLL~~Yv~Yl~f~l~th~~~f~~~~e~~~~~~ 277 (409)
..+.++++.-+.|+.|...--++-..+..+++++.+
T Consensus 19 vl~GLllL~li~~~LwK~GFFkR~~~~~~e~~~~~~ 54 (54)
T 2knc_A 19 VLGGLLLLTILVLAMWKVGFFKRNRPPLEEDDEEGE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCSCCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCCCcchhhhccC
Done!