Query 015310
Match_columns 409
No_of_seqs 298 out of 1917
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02520 bifunctional 3-dehydr 100.0 5E-102 1E-106 811.8 45.4 404 2-408 14-419 (529)
2 PRK09310 aroDE bifunctional 3- 100.0 2.3E-91 4.9E-96 723.5 42.3 368 12-408 1-372 (477)
3 PRK02412 aroD 3-dehydroquinate 100.0 2.3E-57 4.9E-62 434.2 26.1 228 6-233 11-250 (253)
4 COG0710 AroD 3-dehydroquinate 100.0 2.2E-56 4.8E-61 415.6 24.0 223 10-233 1-229 (231)
5 TIGR01093 aroD 3-dehydroquinat 100.0 1.1E-55 2.5E-60 416.9 24.0 217 12-229 1-228 (228)
6 PF01487 DHquinase_I: Type I 3 100.0 9.5E-55 2.1E-59 409.7 18.6 217 14-230 1-224 (224)
7 PRK13575 3-dehydroquinate dehy 100.0 7.7E-54 1.7E-58 405.1 24.3 220 10-231 3-237 (238)
8 cd00502 DHQase_I Type I 3-dehy 100.0 2.3E-53 4.9E-58 400.6 24.2 215 12-230 1-224 (225)
9 PRK13576 3-dehydroquinate dehy 100.0 6.1E-53 1.3E-57 392.1 21.3 206 9-234 1-208 (216)
10 PRK01261 aroD 3-dehydroquinate 100.0 3.6E-48 7.7E-53 363.4 22.8 206 5-232 15-226 (229)
11 COG0169 AroE Shikimate 5-dehyd 100.0 3.8E-48 8.3E-53 373.2 18.6 163 234-408 2-167 (283)
12 PRK14027 quinate/shikimate deh 100.0 1.8E-47 4E-52 370.9 18.5 158 237-408 3-168 (283)
13 PRK12749 quinate/shikimate deh 100.0 9.3E-47 2E-51 367.1 19.0 159 235-408 4-168 (288)
14 PRK12549 shikimate 5-dehydroge 100.0 2.9E-46 6.3E-51 363.4 18.6 159 235-408 2-168 (284)
15 TIGR01809 Shik-DH-AROM shikima 100.0 1.3E-45 2.8E-50 358.8 18.8 159 237-408 4-166 (282)
16 PRK12548 shikimate 5-dehydroge 100.0 5.2E-45 1.1E-49 355.8 19.1 160 234-408 5-170 (289)
17 PRK12550 shikimate 5-dehydroge 100.0 1.5E-44 3.1E-49 348.6 19.0 158 233-408 4-163 (272)
18 PRK00258 aroE shikimate 5-dehy 100.0 1.2E-44 2.6E-49 351.5 18.6 160 235-408 2-164 (278)
19 TIGR00507 aroE shikimate 5-deh 100.0 5.3E-43 1.1E-47 338.7 17.8 155 239-408 1-157 (270)
20 KOG0692 Pentafunctional AROM p 100.0 6.5E-32 1.4E-36 267.7 -4.5 338 63-408 148-495 (595)
21 PF08501 Shikimate_dh_N: Shiki 100.0 7.9E-29 1.7E-33 197.6 6.3 81 243-323 1-83 (83)
22 PRK14192 bifunctional 5,10-met 99.8 2.3E-19 4.9E-24 174.1 11.5 141 242-401 39-193 (283)
23 PF01488 Shikimate_DH: Shikima 98.9 3.3E-09 7.1E-14 92.2 6.3 44 365-408 9-53 (135)
24 PRK08291 ectoine utilization p 98.7 2.6E-08 5.7E-13 99.3 6.5 77 315-408 96-174 (330)
25 TIGR02992 ectoine_eutC ectoine 98.6 8.8E-08 1.9E-12 95.4 6.6 76 316-408 94-171 (326)
26 cd01065 NAD_bind_Shikimate_DH 98.4 8.3E-07 1.8E-11 78.1 8.2 59 337-408 1-60 (155)
27 PRK00045 hemA glutamyl-tRNA re 98.2 5.1E-07 1.1E-11 93.0 2.3 100 299-408 113-223 (423)
28 PRK13940 glutamyl-tRNA reducta 98.2 1.7E-06 3.8E-11 88.7 5.6 96 300-408 113-222 (414)
29 COG0373 HemA Glutamyl-tRNA red 98.0 8.2E-06 1.8E-10 82.9 6.5 139 255-409 64-220 (414)
30 cd05311 NAD_bind_2_malic_enz N 97.9 2.5E-05 5.5E-10 73.8 6.5 52 340-404 10-68 (226)
31 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00013 2.8E-09 67.0 8.1 66 334-408 3-69 (194)
32 cd05191 NAD_bind_amino_acid_DH 97.3 0.00095 2.1E-08 53.1 7.7 52 339-399 3-55 (86)
33 cd01075 NAD_bind_Leu_Phe_Val_D 97.3 0.0011 2.4E-08 61.4 8.6 63 339-408 6-68 (200)
34 TIGR02853 spore_dpaA dipicolin 97.3 0.0019 4E-08 63.3 10.4 43 364-406 147-189 (287)
35 PRK14175 bifunctional 5,10-met 97.3 0.0023 4.9E-08 62.5 10.7 122 258-402 54-193 (286)
36 PLN00203 glutamyl-tRNA reducta 97.2 0.00063 1.4E-08 71.8 6.4 98 300-408 196-307 (519)
37 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0012 2.7E-08 59.5 7.1 43 364-406 40-83 (168)
38 PRK00676 hemA glutamyl-tRNA re 97.1 0.00051 1.1E-08 68.4 5.0 92 300-403 107-210 (338)
39 PRK14194 bifunctional 5,10-met 97.1 0.0038 8.2E-08 61.3 10.8 126 258-406 55-198 (301)
40 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0015 3.1E-08 64.8 6.1 99 299-408 109-219 (311)
41 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0019 4.1E-08 66.6 6.2 44 365-408 177-221 (417)
42 cd04726 KGPDC_HPS 3-Keto-L-gul 96.8 0.029 6.3E-07 51.5 13.4 130 11-159 1-132 (202)
43 PRK08306 dipicolinate synthase 96.7 0.0033 7.1E-08 61.9 6.5 41 364-404 148-188 (296)
44 PRK09140 2-dehydro-3-deoxy-6-p 96.6 0.092 2E-06 48.9 15.1 120 12-159 11-130 (206)
45 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.6 0.3 6.4E-06 47.5 19.1 208 21-231 19-246 (275)
46 PRK06141 ornithine cyclodeamin 96.5 0.0041 8.8E-08 61.7 5.9 42 367-408 124-167 (314)
47 cd00958 DhnA Class I fructose- 96.5 0.06 1.3E-06 50.9 13.2 152 22-186 20-185 (235)
48 PF00670 AdoHcyase_NAD: S-aden 96.5 0.012 2.5E-07 52.7 7.6 43 364-406 19-61 (162)
49 PRK07340 ornithine cyclodeamin 96.4 0.011 2.4E-07 58.4 8.0 42 367-408 124-167 (304)
50 TIGR00518 alaDH alanine dehydr 96.3 0.0064 1.4E-07 61.7 6.1 42 366-407 165-206 (370)
51 PRK14188 bifunctional 5,10-met 96.3 0.03 6.5E-07 55.0 10.2 118 258-402 54-194 (296)
52 TIGR01108 oadA oxaloacetate de 96.3 0.52 1.1E-05 50.7 20.2 208 21-231 19-246 (582)
53 PRK14189 bifunctional 5,10-met 96.2 0.041 9E-07 53.7 10.8 120 258-400 54-191 (285)
54 TIGR03128 RuMP_HxlA 3-hexulose 96.2 0.077 1.7E-06 48.9 11.8 130 12-159 1-132 (206)
55 PRK10792 bifunctional 5,10-met 96.1 0.035 7.5E-07 54.2 9.7 119 258-400 55-192 (285)
56 PF03807 F420_oxidored: NADP o 96.1 0.012 2.7E-07 47.2 5.6 39 370-408 1-43 (96)
57 PRK14176 bifunctional 5,10-met 96.1 0.035 7.7E-07 54.2 9.6 118 258-399 60-196 (287)
58 PRK08328 hypothetical protein; 96.1 0.0068 1.5E-07 57.5 4.4 38 366-403 25-63 (231)
59 TIGR02356 adenyl_thiF thiazole 96.1 0.0081 1.8E-07 55.7 4.8 35 366-400 19-54 (202)
60 PRK05476 S-adenosyl-L-homocyst 96.1 0.015 3.2E-07 60.0 7.1 43 364-406 208-250 (425)
61 PRK08618 ornithine cyclodeamin 96.0 0.011 2.3E-07 59.0 5.7 42 367-408 126-169 (325)
62 PRK08762 molybdopterin biosynt 96.0 0.0073 1.6E-07 61.4 4.4 34 367-400 134-168 (376)
63 PF13241 NAD_binding_7: Putati 96.0 0.0087 1.9E-07 49.3 4.1 37 365-401 4-40 (103)
64 cd04740 DHOD_1B_like Dihydroor 95.9 0.21 4.6E-06 48.8 14.4 84 12-104 91-185 (296)
65 PRK11572 copper homeostasis pr 95.9 0.49 1.1E-05 45.3 16.1 146 19-176 8-164 (248)
66 PRK14191 bifunctional 5,10-met 95.9 0.11 2.3E-06 50.9 11.6 119 258-399 53-189 (285)
67 PRK00043 thiE thiamine-phospha 95.8 0.34 7.3E-06 44.6 14.6 108 23-160 21-131 (212)
68 cd00452 KDPG_aldolase KDPG and 95.8 0.42 9.1E-06 43.7 14.8 118 12-159 5-123 (190)
69 PRK05866 short chain dehydroge 95.7 0.024 5.1E-07 55.4 6.5 44 364-407 36-80 (293)
70 cd00401 AdoHcyase S-adenosyl-L 95.7 0.026 5.6E-07 58.1 6.8 43 364-406 198-240 (413)
71 TIGR02354 thiF_fam2 thiamine b 95.6 0.014 3.1E-07 54.1 4.4 35 366-400 19-54 (200)
72 PRK14179 bifunctional 5,10-met 95.6 0.068 1.5E-06 52.2 9.3 117 258-398 54-189 (284)
73 cd03174 DRE_TIM_metallolyase D 95.6 1.3 2.7E-05 42.3 18.0 199 21-232 17-245 (265)
74 PRK12331 oxaloacetate decarbox 95.6 1.8 3.9E-05 45.1 20.2 209 21-232 24-252 (448)
75 PRK14180 bifunctional 5,10-met 95.5 0.095 2.1E-06 51.1 9.9 118 259-399 54-190 (282)
76 cd00958 DhnA Class I fructose- 95.5 0.38 8.3E-06 45.3 13.9 138 14-157 65-211 (235)
77 PRK06196 oxidoreductase; Provi 95.5 0.029 6.2E-07 55.2 6.3 44 364-407 22-66 (315)
78 PRK14982 acyl-ACP reductase; P 95.5 0.026 5.5E-07 56.6 5.9 45 364-408 151-198 (340)
79 PLN02780 ketoreductase/ oxidor 95.4 0.026 5.6E-07 56.0 5.7 42 367-408 52-94 (320)
80 PRK14172 bifunctional 5,10-met 95.4 0.11 2.3E-06 50.7 9.7 118 258-399 54-190 (278)
81 PF02826 2-Hacid_dh_C: D-isome 95.4 0.037 8E-07 50.2 6.2 43 363-405 31-73 (178)
82 cd00945 Aldolase_Class_I Class 95.4 1.3 2.7E-05 39.9 16.4 141 21-175 11-168 (201)
83 PRK14183 bifunctional 5,10-met 95.4 0.14 3E-06 49.9 10.4 119 258-399 53-189 (281)
84 PRK08644 thiamine biosynthesis 95.3 0.021 4.6E-07 53.4 4.5 35 366-400 26-61 (212)
85 TIGR00936 ahcY adenosylhomocys 95.3 0.033 7.1E-07 57.1 6.2 43 364-406 191-233 (406)
86 PRK01130 N-acetylmannosamine-6 95.3 1.1 2.3E-05 41.9 16.0 118 21-159 21-145 (221)
87 TIGR02355 moeB molybdopterin s 95.3 0.019 4E-07 54.8 4.1 37 366-402 22-59 (240)
88 PRK14171 bifunctional 5,10-met 95.2 0.12 2.7E-06 50.4 9.7 120 258-401 54-194 (288)
89 cd00959 DeoC 2-deoxyribose-5-p 95.1 1.1 2.4E-05 41.4 15.4 143 19-177 13-172 (203)
90 PF03932 CutC: CutC family; I 95.1 0.67 1.4E-05 43.0 13.7 125 19-155 7-142 (201)
91 PRK12475 thiamine/molybdopteri 95.1 0.026 5.7E-07 56.6 4.7 36 366-401 22-58 (338)
92 PRK14182 bifunctional 5,10-met 95.1 0.13 2.7E-06 50.2 9.2 120 258-400 52-190 (282)
93 PTZ00075 Adenosylhomocysteinas 95.1 0.081 1.8E-06 55.2 8.2 42 364-405 250-291 (476)
94 PRK12330 oxaloacetate decarbox 95.1 3.5 7.6E-05 43.5 20.3 210 21-232 25-255 (499)
95 PRK14177 bifunctional 5,10-met 95.0 0.14 2.9E-06 50.1 9.2 121 258-401 55-194 (284)
96 TIGR02320 PEP_mutase phosphoen 95.0 1 2.2E-05 44.1 15.4 121 57-184 71-215 (285)
97 PRK05690 molybdopterin biosynt 95.0 0.032 7E-07 53.3 4.8 35 366-400 30-65 (245)
98 cd04729 NanE N-acetylmannosami 95.0 1.2 2.6E-05 41.6 15.3 119 21-159 25-149 (219)
99 PRK14173 bifunctional 5,10-met 95.0 0.16 3.4E-06 49.7 9.5 120 258-400 51-188 (287)
100 KOG1208 Dehydrogenases with di 95.0 0.044 9.5E-07 54.4 5.7 45 364-408 31-76 (314)
101 PRK14041 oxaloacetate decarbox 94.9 3.6 7.8E-05 43.2 19.9 210 21-231 23-250 (467)
102 cd00757 ThiF_MoeB_HesA_family 94.9 0.034 7.3E-07 52.5 4.6 35 366-400 19-54 (228)
103 PRK14170 bifunctional 5,10-met 94.9 0.17 3.7E-06 49.4 9.4 118 258-399 53-189 (284)
104 PRK07688 thiamine/molybdopteri 94.9 0.035 7.6E-07 55.7 4.8 36 366-401 22-58 (339)
105 PRK07028 bifunctional hexulose 94.9 0.85 1.8E-05 47.2 15.2 135 9-160 2-138 (430)
106 cd02940 DHPD_FMN Dihydropyrimi 94.8 1 2.3E-05 44.2 15.1 84 10-103 100-198 (299)
107 cd02810 DHOD_DHPD_FMN Dihydroo 94.8 0.36 7.7E-06 47.0 11.7 89 9-105 98-196 (289)
108 PRK09282 pyruvate carboxylase 94.8 3.3 7.2E-05 44.8 19.8 207 21-231 24-251 (592)
109 PLN02494 adenosylhomocysteinas 94.8 0.055 1.2E-06 56.3 6.0 41 364-404 250-290 (477)
110 PRK06719 precorrin-2 dehydroge 94.8 0.047 1E-06 48.6 4.9 38 364-401 9-46 (157)
111 cd04722 TIM_phosphate_binding 94.7 1.5 3.3E-05 38.8 14.9 124 23-162 12-145 (200)
112 PRK14169 bifunctional 5,10-met 94.7 0.21 4.6E-06 48.7 9.7 127 257-401 51-191 (282)
113 PRK07455 keto-hydroxyglutarate 94.7 0.56 1.2E-05 42.9 12.0 122 12-164 13-134 (187)
114 PRK14178 bifunctional 5,10-met 94.7 0.23 5E-06 48.4 9.7 124 258-405 48-190 (279)
115 PRK15116 sulfur acceptor prote 94.6 0.043 9.4E-07 53.2 4.7 35 366-400 28-63 (268)
116 PRK14190 bifunctional 5,10-met 94.6 0.28 6.1E-06 47.9 10.2 120 258-400 54-191 (284)
117 PRK05597 molybdopterin biosynt 94.6 0.044 9.6E-07 55.3 4.8 36 366-401 26-62 (355)
118 PRK13111 trpA tryptophan synth 94.6 3.4 7.5E-05 39.8 17.6 84 14-104 17-123 (258)
119 TIGR03217 4OH_2_O_val_ald 4-hy 94.6 2.6 5.6E-05 42.2 17.3 199 21-231 22-242 (333)
120 PRK14166 bifunctional 5,10-met 94.5 0.25 5.4E-06 48.2 9.6 120 258-400 52-190 (282)
121 PRK14184 bifunctional 5,10-met 94.5 0.24 5.3E-06 48.4 9.6 120 258-401 53-195 (286)
122 PLN03209 translocon at the inn 94.4 0.069 1.5E-06 57.0 6.0 42 366-407 78-120 (576)
123 cd00945 Aldolase_Class_I Class 94.4 1.5 3.3E-05 39.3 14.3 93 10-107 48-151 (201)
124 COG0190 FolD 5,10-methylene-te 94.4 0.53 1.1E-05 45.8 11.4 137 242-400 36-189 (283)
125 PRK14187 bifunctional 5,10-met 94.4 0.36 7.7E-06 47.4 10.5 119 258-399 54-192 (294)
126 PRK05600 thiamine biosynthesis 94.4 0.051 1.1E-06 55.2 4.7 35 366-400 39-74 (370)
127 cd05211 NAD_bind_Glu_Leu_Phe_V 94.3 0.19 4.2E-06 47.2 8.2 54 339-401 3-57 (217)
128 PRK09424 pntA NAD(P) transhydr 94.3 0.082 1.8E-06 55.8 6.2 41 367-407 164-204 (509)
129 PRK14167 bifunctional 5,10-met 94.3 0.29 6.3E-06 48.1 9.6 119 258-399 53-193 (297)
130 PRK14193 bifunctional 5,10-met 94.3 0.42 9E-06 46.7 10.5 120 258-400 54-193 (284)
131 PRK08223 hypothetical protein; 94.3 0.052 1.1E-06 53.1 4.3 35 366-400 25-60 (287)
132 TIGR00693 thiE thiamine-phosph 94.3 1.4 3E-05 40.2 13.6 106 23-159 13-122 (196)
133 CHL00200 trpA tryptophan synth 94.2 2.2 4.8E-05 41.3 15.5 125 14-175 20-166 (263)
134 PRK14186 bifunctional 5,10-met 94.2 0.28 6.1E-06 48.2 9.3 119 258-399 54-190 (297)
135 KOG1014 17 beta-hydroxysteroid 94.2 0.07 1.5E-06 52.3 5.0 41 368-408 49-90 (312)
136 PRK06720 hypothetical protein; 94.2 0.11 2.4E-06 46.7 6.0 42 365-406 13-55 (169)
137 PF01262 AlaDh_PNT_C: Alanine 94.2 0.098 2.1E-06 46.9 5.6 42 366-407 18-59 (168)
138 PRK14040 oxaloacetate decarbox 94.1 4 8.7E-05 44.1 18.5 207 21-230 25-251 (593)
139 cd01076 NAD_bind_1_Glu_DH NAD( 94.0 0.24 5.2E-06 46.8 8.2 52 339-399 11-63 (227)
140 PRK06153 hypothetical protein; 94.0 0.052 1.1E-06 55.0 3.9 35 366-400 174-209 (393)
141 cd01485 E1-1_like Ubiquitin ac 94.0 0.069 1.5E-06 49.4 4.3 35 366-400 17-52 (198)
142 PF13450 NAD_binding_8: NAD(P) 94.0 0.087 1.9E-06 40.0 4.2 29 373-401 1-29 (68)
143 PRK14181 bifunctional 5,10-met 93.9 0.35 7.7E-06 47.3 9.3 120 257-399 47-189 (287)
144 PRK07259 dihydroorotate dehydr 93.9 0.3 6.4E-06 48.0 9.0 85 10-104 92-188 (301)
145 cd08205 RuBisCO_IV_RLP Ribulos 93.9 7.5 0.00016 39.5 19.2 195 56-271 121-345 (367)
146 PF13738 Pyr_redox_3: Pyridine 93.9 0.084 1.8E-06 47.9 4.8 40 364-403 163-202 (203)
147 PF00070 Pyr_redox: Pyridine n 93.9 0.12 2.5E-06 40.2 4.9 32 370-401 1-32 (80)
148 cd07944 DRE_TIM_HOA_like 4-hyd 93.7 4.7 0.0001 39.0 16.7 197 21-231 18-237 (266)
149 cd02801 DUS_like_FMN Dihydrour 93.7 0.44 9.5E-06 44.5 9.3 88 11-104 55-157 (231)
150 cd01492 Aos1_SUMO Ubiquitin ac 93.6 0.08 1.7E-06 48.9 4.1 35 366-400 19-54 (197)
151 cd00564 TMP_TenI Thiamine mono 93.6 1.6 3.5E-05 39.2 12.7 107 23-159 12-121 (196)
152 PRK14185 bifunctional 5,10-met 93.5 0.66 1.4E-05 45.6 10.3 119 258-399 53-193 (293)
153 TIGR00262 trpA tryptophan synt 93.5 7.6 0.00016 37.4 18.2 38 15-52 16-53 (256)
154 PLN02897 tetrahydrofolate dehy 93.3 0.57 1.2E-05 46.9 9.7 119 258-399 108-246 (345)
155 PRK11858 aksA trans-homoaconit 93.2 2.9 6.3E-05 42.6 15.1 193 21-230 24-241 (378)
156 cd00429 RPE Ribulose-5-phospha 93.2 1.6 3.4E-05 40.0 12.2 110 12-132 1-114 (211)
157 PRK07878 molybdopterin biosynt 93.2 0.094 2E-06 53.7 4.2 35 366-400 40-75 (392)
158 PRK13243 glyoxylate reductase; 93.2 0.15 3.3E-06 51.0 5.6 40 364-403 146-185 (333)
159 PLN02928 oxidoreductase family 93.2 0.14 3.1E-06 51.5 5.5 37 365-401 156-192 (347)
160 PRK12769 putative oxidoreducta 93.2 0.11 2.3E-06 56.8 4.9 35 367-401 326-360 (654)
161 PF01791 DeoC: DeoC/LacD famil 93.2 0.81 1.8E-05 43.3 10.3 142 11-157 55-225 (236)
162 PRK07424 bifunctional sterol d 93.1 0.18 4E-06 51.8 6.2 41 365-405 175-216 (406)
163 PRK13307 bifunctional formalde 93.1 1.1 2.4E-05 45.9 11.7 133 9-160 171-306 (391)
164 cd05313 NAD_bind_2_Glu_DH NAD( 93.1 0.35 7.6E-06 46.5 7.7 51 339-398 18-69 (254)
165 PRK06484 short chain dehydroge 93.1 0.17 3.8E-06 53.2 6.2 44 365-408 266-310 (520)
166 TIGR01381 E1_like_apg7 E1-like 93.1 0.1 2.2E-06 56.1 4.4 35 366-400 336-371 (664)
167 PRK14031 glutamate dehydrogena 93.1 0.3 6.5E-06 50.7 7.7 52 338-398 207-259 (444)
168 TIGR01949 AroFGH_arch predicte 93.1 1.6 3.6E-05 41.8 12.4 152 20-186 33-198 (258)
169 PLN02516 methylenetetrahydrofo 93.1 0.61 1.3E-05 45.9 9.4 119 258-399 61-199 (299)
170 PRK12779 putative bifunctional 93.1 0.11 2.3E-06 59.1 4.7 36 366-401 304-339 (944)
171 PLN02616 tetrahydrofolate dehy 93.0 0.6 1.3E-05 47.0 9.3 119 258-399 125-263 (364)
172 PRK06567 putative bifunctional 92.9 0.13 2.9E-06 58.0 5.1 35 366-400 381-415 (1028)
173 PRK08195 4-hyroxy-2-oxovalerat 92.9 7.7 0.00017 38.9 17.3 199 21-231 23-243 (337)
174 PF00682 HMGL-like: HMGL-like 92.9 6.6 0.00014 36.9 16.1 199 21-230 12-234 (237)
175 PRK05581 ribulose-phosphate 3- 92.9 4.4 9.5E-05 37.5 14.7 111 10-131 3-117 (220)
176 PF01791 DeoC: DeoC/LacD famil 92.8 1.3 2.9E-05 41.8 11.3 148 24-182 20-191 (236)
177 PRK08324 short chain dehydroge 92.8 0.2 4.2E-06 55.0 6.3 43 365-407 419-462 (681)
178 cd06556 ICL_KPHMT Members of t 92.8 4.1 8.8E-05 38.9 14.5 119 57-190 65-201 (240)
179 PRK12581 oxaloacetate decarbox 92.8 14 0.00031 38.7 19.6 207 22-231 34-260 (468)
180 PRK07226 fructose-bisphosphate 92.8 1.7 3.7E-05 42.0 12.1 153 20-187 36-203 (267)
181 PRK11613 folP dihydropteroate 92.8 0.77 1.7E-05 44.9 9.6 144 21-183 36-214 (282)
182 PRK07201 short chain dehydroge 92.8 0.21 4.6E-06 54.1 6.4 43 365-407 368-411 (657)
183 PRK12480 D-lactate dehydrogena 92.7 0.2 4.4E-06 50.0 5.7 40 364-403 142-181 (330)
184 PRK07411 hypothetical protein; 92.7 0.12 2.7E-06 52.8 4.3 35 366-400 36-71 (390)
185 PRK10415 tRNA-dihydrouridine s 92.7 4.3 9.3E-05 40.4 15.1 88 13-105 67-169 (321)
186 TIGR01949 AroFGH_arch predicte 92.6 2.5 5.4E-05 40.6 12.9 139 10-155 70-222 (258)
187 cd07948 DRE_TIM_HCS Saccharomy 92.6 7.6 0.00016 37.5 16.3 194 21-231 20-238 (262)
188 PRK05855 short chain dehydroge 92.6 0.23 4.9E-06 52.5 6.3 43 365-407 312-355 (582)
189 PTZ00079 NADP-specific glutama 92.5 0.55 1.2E-05 48.8 8.6 55 337-400 215-270 (454)
190 TIGR02632 RhaD_aldol-ADH rhamn 92.5 0.26 5.5E-06 54.1 6.6 44 364-407 410-454 (676)
191 PLN02591 tryptophan synthase 92.5 10 0.00023 36.4 18.3 170 14-200 7-210 (250)
192 PRK14174 bifunctional 5,10-met 92.5 0.56 1.2E-05 46.1 8.3 123 258-403 53-199 (295)
193 PF02254 TrkA_N: TrkA-N domain 92.5 0.3 6.5E-06 40.3 5.6 38 371-408 1-38 (116)
194 COG1064 AdhP Zn-dependent alco 92.4 0.24 5.3E-06 49.5 5.8 40 367-406 166-205 (339)
195 TIGR02090 LEU1_arch isopropylm 92.3 7.9 0.00017 39.2 16.6 193 21-231 20-238 (363)
196 TIGR00561 pntA NAD(P) transhyd 92.2 0.28 6E-06 51.8 6.1 40 367-406 163-202 (511)
197 TIGR03315 Se_ygfK putative sel 92.2 0.17 3.8E-06 57.5 4.9 34 367-400 536-569 (1012)
198 PRK07985 oxidoreductase; Provi 92.1 0.27 5.9E-06 47.9 5.7 36 365-400 46-82 (294)
199 PLN02334 ribulose-phosphate 3- 92.1 9.7 0.00021 35.8 16.1 137 9-163 6-150 (229)
200 PRK09853 putative selenate red 92.1 0.19 4.1E-06 57.2 5.0 35 366-400 537-571 (1019)
201 PRK12771 putative glutamate sy 92.1 0.2 4.2E-06 53.7 5.0 35 366-400 135-169 (564)
202 PRK06046 alanine dehydrogenase 92.1 0.26 5.7E-06 49.1 5.6 41 368-408 129-171 (326)
203 cd00331 IGPS Indole-3-glycerol 92.0 10 0.00022 35.2 16.3 109 25-157 33-145 (217)
204 cd02810 DHOD_DHPD_FMN Dihydroo 92.0 3.6 7.7E-05 40.0 13.4 89 63-162 97-198 (289)
205 PRK14168 bifunctional 5,10-met 91.9 1.5 3.1E-05 43.3 10.4 119 258-399 55-197 (297)
206 PRK09880 L-idonate 5-dehydroge 91.9 0.3 6.5E-06 48.5 5.9 40 367-406 169-209 (343)
207 PRK07226 fructose-bisphosphate 91.9 2.8 6E-05 40.6 12.3 127 23-155 93-226 (267)
208 PLN02477 glutamate dehydrogena 91.9 0.53 1.1E-05 48.5 7.6 54 338-400 185-239 (410)
209 COG1179 Dinucleotide-utilizing 91.9 0.18 3.9E-06 47.9 3.9 35 366-400 28-63 (263)
210 PRK13125 trpA tryptophan synth 91.9 10 0.00022 36.1 16.0 35 14-49 9-43 (244)
211 PRK06552 keto-hydroxyglutarate 91.9 7.3 0.00016 36.5 14.7 119 12-159 14-135 (213)
212 PRK06701 short chain dehydroge 91.8 0.32 6.9E-06 47.3 5.8 38 364-401 42-80 (290)
213 PRK12831 putative oxidoreducta 91.8 0.24 5.2E-06 51.8 5.2 35 366-400 138-172 (464)
214 PLN02852 ferredoxin-NADP+ redu 91.8 0.26 5.7E-06 51.9 5.5 36 366-401 24-61 (491)
215 PRK12809 putative oxidoreducta 91.8 0.21 4.6E-06 54.3 5.0 35 367-401 309-343 (639)
216 TIGR00736 nifR3_rel_arch TIM-b 91.8 6.2 0.00013 37.5 14.2 89 12-108 69-171 (231)
217 cd02911 arch_FMN Archeal FMN-b 91.8 6.9 0.00015 37.1 14.7 133 12-162 74-222 (233)
218 PRK13813 orotidine 5'-phosphat 91.8 7.1 0.00015 36.2 14.6 136 9-158 2-144 (215)
219 cd04739 DHOD_like Dihydroorota 91.8 1.7 3.7E-05 43.3 11.0 89 9-107 99-197 (325)
220 PRK07232 bifunctional malic en 91.5 0.84 1.8E-05 50.5 9.1 100 276-400 112-220 (752)
221 PRK06128 oxidoreductase; Provi 91.4 0.33 7.1E-06 47.3 5.4 36 366-401 53-89 (300)
222 PRK12810 gltD glutamate syntha 91.4 0.26 5.5E-06 51.6 4.9 36 366-401 141-176 (471)
223 TIGR00126 deoC deoxyribose-pho 91.4 9.3 0.0002 35.8 14.8 144 20-177 15-173 (211)
224 TIGR01316 gltA glutamate synth 91.2 0.29 6.4E-06 50.9 5.1 35 366-400 131-165 (449)
225 PLN02602 lactate dehydrogenase 91.2 0.31 6.8E-06 49.1 5.0 40 369-408 38-79 (350)
226 PRK07259 dihydroorotate dehydr 91.2 2.9 6.3E-05 41.0 11.8 39 63-109 90-129 (301)
227 COG0281 SfcA Malic enzyme [Ene 91.1 0.84 1.8E-05 46.7 7.9 128 243-400 97-234 (432)
228 PLN02686 cinnamoyl-CoA reducta 91.1 0.51 1.1E-05 47.6 6.6 43 364-406 49-92 (367)
229 PRK11749 dihydropyrimidine deh 91.1 0.29 6.2E-06 51.0 4.9 36 366-401 138-173 (457)
230 cd07944 DRE_TIM_HOA_like 4-hyd 91.1 3.5 7.5E-05 39.9 12.1 103 70-181 5-123 (266)
231 TIGR00737 nifR3_yhdG putative 91.1 2 4.3E-05 42.6 10.6 91 9-105 62-167 (319)
232 PRK15469 ghrA bifunctional gly 91.0 0.36 7.8E-06 47.9 5.3 40 364-403 132-171 (312)
233 cd04740 DHOD_1B_like Dihydroor 91.0 1.6 3.4E-05 42.7 9.8 40 63-110 88-127 (296)
234 PRK04148 hypothetical protein; 91.0 0.44 9.5E-06 41.4 5.1 39 367-406 16-54 (134)
235 COG2072 TrkA Predicted flavopr 91.0 0.3 6.6E-06 50.8 4.9 39 364-402 171-209 (443)
236 TIGR00292 thiazole biosynthesi 91.0 0.27 5.9E-06 47.2 4.2 33 369-401 22-54 (254)
237 TIGR00736 nifR3_rel_arch TIM-b 90.9 7.6 0.00016 36.9 13.9 111 63-185 66-196 (231)
238 PRK12862 malic enzyme; Reviewe 90.9 1.1 2.4E-05 49.7 9.4 99 276-399 120-227 (763)
239 PRK12814 putative NADPH-depend 90.9 0.34 7.3E-06 53.0 5.4 35 367-401 192-226 (652)
240 PRK10550 tRNA-dihydrouridine s 90.9 2.4 5.1E-05 42.1 10.9 89 10-105 63-168 (312)
241 PF02882 THF_DHG_CYH_C: Tetrah 90.9 0.75 1.6E-05 41.1 6.6 38 364-401 32-70 (160)
242 PRK06199 ornithine cyclodeamin 90.8 0.4 8.6E-06 48.9 5.4 41 368-408 155-198 (379)
243 cd08230 glucose_DH Glucose deh 90.8 0.47 1E-05 47.3 5.9 39 367-405 172-213 (355)
244 cd01491 Ube1_repeat1 Ubiquitin 90.7 0.31 6.6E-06 47.8 4.3 35 367-401 18-53 (286)
245 PRK12778 putative bifunctional 90.7 0.36 7.7E-06 53.6 5.4 35 366-400 429-463 (752)
246 TIGR00190 thiC thiamine biosyn 90.6 4.9 0.00011 41.0 12.7 231 11-269 61-322 (423)
247 PRK15317 alkyl hydroperoxide r 90.6 19 0.00041 38.2 18.1 32 368-399 211-242 (517)
248 TIGR02660 nifV_homocitr homoci 90.5 14 0.0003 37.4 16.3 194 21-229 21-237 (365)
249 TIGR03366 HpnZ_proposed putati 90.5 0.5 1.1E-05 45.6 5.7 39 367-405 120-159 (280)
250 cd07939 DRE_TIM_NifV Streptomy 90.5 11 0.00025 36.0 15.0 193 21-231 18-236 (259)
251 TIGR01318 gltD_gamma_fam gluta 90.5 0.37 8.1E-06 50.4 5.0 35 367-401 140-174 (467)
252 cd08237 ribitol-5-phosphate_DH 90.4 0.51 1.1E-05 47.0 5.8 40 367-406 163-204 (341)
253 PRK14851 hypothetical protein; 90.3 0.31 6.7E-06 53.4 4.4 35 366-400 41-76 (679)
254 PF10727 Rossmann-like: Rossma 90.3 0.18 3.9E-06 43.3 2.1 40 369-408 11-51 (127)
255 TIGR01182 eda Entner-Doudoroff 90.3 5.7 0.00012 37.0 12.1 120 12-161 9-129 (204)
256 PRK06436 glycerate dehydrogena 90.2 0.48 1E-05 46.8 5.3 38 364-401 118-155 (303)
257 PRK04176 ribulose-1,5-biphosph 90.2 0.36 7.8E-06 46.4 4.3 33 369-401 26-58 (257)
258 PRK06823 ornithine cyclodeamin 90.2 0.53 1.1E-05 46.8 5.6 41 368-408 128-170 (315)
259 COG1635 THI4 Ribulose 1,5-bisp 90.1 0.35 7.6E-06 45.5 3.9 32 370-401 32-63 (262)
260 PRK06407 ornithine cyclodeamin 90.1 0.55 1.2E-05 46.3 5.6 41 368-408 117-159 (301)
261 cd04735 OYE_like_4_FMN Old yel 90.1 1.8 3.9E-05 43.7 9.4 78 26-106 147-256 (353)
262 PRK14030 glutamate dehydrogena 90.0 1.2 2.6E-05 46.3 8.2 50 338-396 207-256 (445)
263 PTZ00245 ubiquitin activating 90.0 0.38 8.3E-06 46.2 4.2 36 366-401 24-60 (287)
264 PRK01747 mnmC bifunctional tRN 90.0 0.36 7.9E-06 52.7 4.6 33 369-401 261-293 (662)
265 PRK08261 fabG 3-ketoacyl-(acyl 90.0 0.63 1.4E-05 48.2 6.2 36 365-400 207-243 (450)
266 PRK09496 trkA potassium transp 90.0 0.58 1.2E-05 48.3 5.9 42 366-407 229-270 (453)
267 cd08239 THR_DH_like L-threonin 89.8 0.55 1.2E-05 46.3 5.4 40 367-406 163-203 (339)
268 TIGR01202 bchC 2-desacetyl-2-h 89.8 0.57 1.2E-05 45.9 5.5 39 367-405 144-183 (308)
269 PRK07574 formate dehydrogenase 89.8 0.48 1E-05 48.4 5.0 38 364-401 188-225 (385)
270 cd05212 NAD_bind_m-THF_DH_Cycl 89.8 1.2 2.7E-05 38.8 6.9 37 364-400 24-61 (140)
271 PRK02227 hypothetical protein; 89.7 3.3 7.2E-05 39.3 10.2 98 93-192 15-126 (238)
272 PF02423 OCD_Mu_crystall: Orni 89.7 0.58 1.3E-05 46.4 5.5 41 368-408 128-170 (313)
273 PRK11815 tRNA-dihydrouridine s 89.7 3.5 7.5E-05 41.3 11.0 92 10-105 65-171 (333)
274 PRK05562 precorrin-2 dehydroge 89.7 0.59 1.3E-05 44.1 5.2 38 364-401 21-58 (223)
275 cd04731 HisF The cyclase subun 89.7 12 0.00027 35.2 14.4 189 21-230 28-241 (243)
276 PLN02342 ornithine carbamoyltr 89.7 16 0.00034 37.0 15.6 187 185-399 13-226 (348)
277 PRK13523 NADPH dehydrogenase N 89.7 2.5 5.4E-05 42.4 10.0 81 26-107 145-249 (337)
278 TIGR03201 dearomat_had 6-hydro 89.6 0.67 1.5E-05 46.1 5.9 40 367-406 166-205 (349)
279 PRK00366 ispG 4-hydroxy-3-meth 89.6 7 0.00015 39.3 12.7 148 20-183 39-204 (360)
280 PRK13984 putative oxidoreducta 89.5 0.46 1E-05 51.3 5.0 36 366-401 281-316 (604)
281 PLN03139 formate dehydrogenase 89.4 0.63 1.4E-05 47.5 5.6 38 364-401 195-232 (386)
282 PRK07589 ornithine cyclodeamin 89.4 0.64 1.4E-05 46.8 5.6 41 368-408 129-171 (346)
283 PRK12775 putative trifunctiona 89.4 0.44 9.5E-06 54.6 4.8 34 367-400 429-462 (1006)
284 TIGR01163 rpe ribulose-phospha 89.4 4.4 9.6E-05 37.0 10.8 79 15-104 3-85 (210)
285 PLN02819 lysine-ketoglutarate 89.3 0.5 1.1E-05 54.0 5.2 42 367-408 568-623 (1042)
286 PRK05718 keto-hydroxyglutarate 89.3 9.8 0.00021 35.6 13.0 119 12-159 16-134 (212)
287 cd02933 OYE_like_FMN Old yello 89.3 3.7 8E-05 41.2 10.9 80 25-106 154-262 (338)
288 PLN00093 geranylgeranyl diphos 89.2 0.43 9.4E-06 49.7 4.3 34 369-402 40-73 (450)
289 TIGR01496 DHPS dihydropteroate 89.2 15 0.00032 35.4 14.6 140 20-178 20-191 (257)
290 PRK08605 D-lactate dehydrogena 89.2 0.57 1.2E-05 46.8 5.0 40 364-403 142-182 (332)
291 cd07941 DRE_TIM_LeuA3 Desulfob 89.1 16 0.00035 35.3 15.0 199 21-230 18-248 (273)
292 cd00739 DHPS DHPS subgroup of 88.9 2.2 4.7E-05 41.2 8.6 143 21-183 22-201 (257)
293 PRK14042 pyruvate carboxylase 88.9 39 0.00083 36.7 20.4 210 22-232 25-252 (596)
294 PLN02740 Alcohol dehydrogenase 88.9 0.71 1.5E-05 46.7 5.5 40 367-406 198-238 (381)
295 PRK00257 erythronate-4-phospha 88.8 0.62 1.3E-05 47.5 5.0 38 364-401 112-149 (381)
296 KOG1298 Squalene monooxygenase 88.8 0.48 1E-05 48.0 4.0 37 370-406 47-83 (509)
297 cd05188 MDR Medium chain reduc 88.7 0.91 2E-05 42.4 5.8 41 367-407 134-174 (271)
298 PRK06487 glycerate dehydrogena 88.7 0.68 1.5E-05 46.0 5.1 36 365-400 145-180 (317)
299 cd02801 DUS_like_FMN Dihydrour 88.7 16 0.00035 33.8 14.3 84 13-109 3-91 (231)
300 PRK11730 fadB multifunctional 88.7 0.65 1.4E-05 51.3 5.4 37 369-405 314-350 (715)
301 TIGR02371 ala_DH_arch alanine 88.7 0.79 1.7E-05 45.7 5.6 41 368-408 128-170 (325)
302 COG1063 Tdh Threonine dehydrog 88.6 0.8 1.7E-05 46.0 5.7 39 368-406 169-208 (350)
303 PRK08410 2-hydroxyacid dehydro 88.6 0.73 1.6E-05 45.7 5.3 37 365-401 142-178 (311)
304 TIGR02822 adh_fam_2 zinc-bindi 88.6 0.92 2E-05 44.9 6.0 39 367-405 165-203 (329)
305 cd07938 DRE_TIM_HMGL 3-hydroxy 88.5 25 0.00054 34.1 16.3 143 22-178 19-189 (274)
306 PRK09414 glutamate dehydrogena 88.5 1.4 3E-05 45.8 7.4 53 337-398 210-263 (445)
307 KOG0409 Predicted dehydrogenas 88.4 0.93 2E-05 44.5 5.6 41 368-408 35-75 (327)
308 cd08210 RLP_RrRLP Ribulose bis 88.4 11 0.00025 38.2 13.7 106 56-169 117-234 (364)
309 PRK15438 erythronate-4-phospha 88.4 0.77 1.7E-05 46.8 5.3 37 364-400 112-148 (378)
310 PRK14852 hypothetical protein; 88.4 0.5 1.1E-05 53.4 4.2 106 124-229 84-206 (989)
311 TIGR01496 DHPS dihydropteroate 88.3 3.5 7.6E-05 39.7 9.6 104 73-189 12-127 (257)
312 cd08245 CAD Cinnamyl alcohol d 88.3 0.99 2.2E-05 44.1 6.0 41 367-407 162-202 (330)
313 TIGR01327 PGDH D-3-phosphoglyc 88.3 0.88 1.9E-05 48.4 6.0 37 364-400 134-170 (525)
314 COG0499 SAM1 S-adenosylhomocys 88.3 0.78 1.7E-05 46.0 5.1 45 364-408 205-249 (420)
315 PLN02256 arogenate dehydrogena 88.3 0.98 2.1E-05 44.6 5.9 36 367-402 35-70 (304)
316 cd08295 double_bond_reductase_ 88.3 0.95 2.1E-05 44.7 5.9 41 367-407 151-192 (338)
317 PLN02463 lycopene beta cyclase 88.2 0.57 1.2E-05 48.9 4.4 33 369-401 29-61 (447)
318 TIGR01317 GOGAT_sm_gam glutama 88.1 0.68 1.5E-05 48.7 5.0 35 367-401 142-176 (485)
319 cd03174 DRE_TIM_metallolyase D 88.1 7.3 0.00016 36.9 11.7 86 70-164 4-98 (265)
320 PRK12858 tagatose 1,6-diphosph 88.0 17 0.00037 36.5 14.6 162 19-190 45-251 (340)
321 PLN02985 squalene monooxygenas 88.0 0.64 1.4E-05 49.3 4.7 34 368-401 43-76 (514)
322 cd04741 DHOD_1A_like Dihydroor 88.0 18 0.00039 35.4 14.6 86 9-103 91-191 (294)
323 TIGR02818 adh_III_F_hyde S-(hy 88.0 0.98 2.1E-05 45.4 5.9 40 367-406 185-225 (368)
324 TIGR02437 FadB fatty oxidation 88.0 0.77 1.7E-05 50.7 5.5 39 368-406 313-351 (714)
325 KOG0024 Sorbitol dehydrogenase 87.9 0.97 2.1E-05 44.8 5.4 39 367-405 169-208 (354)
326 PLN02927 antheraxanthin epoxid 87.9 0.63 1.4E-05 50.9 4.6 35 367-401 80-114 (668)
327 PF00208 ELFV_dehydrog: Glutam 87.8 2 4.4E-05 41.1 7.6 49 339-395 11-59 (244)
328 cd05312 NAD_bind_1_malic_enz N 87.7 1.2 2.5E-05 43.5 5.9 37 364-400 21-68 (279)
329 PLN02657 3,8-divinyl protochlo 87.7 0.92 2E-05 46.3 5.5 39 365-403 57-96 (390)
330 COG0269 SgbH 3-hexulose-6-phos 87.7 6.2 0.00013 36.9 10.3 197 9-255 2-202 (217)
331 PRK05286 dihydroorotate dehydr 87.7 21 0.00046 35.8 15.2 97 63-164 136-249 (344)
332 PRK06932 glycerate dehydrogena 87.7 0.83 1.8E-05 45.3 5.0 37 365-401 144-180 (314)
333 PF00289 CPSase_L_chain: Carba 87.6 0.7 1.5E-05 38.6 3.8 35 369-403 3-37 (110)
334 KOG2018 Predicted dinucleotide 87.6 0.73 1.6E-05 45.3 4.3 36 366-401 72-108 (430)
335 COG0036 Rpe Pentose-5-phosphat 87.6 25 0.00054 33.1 14.4 85 9-106 2-92 (220)
336 cd07940 DRE_TIM_IPMS 2-isoprop 87.6 24 0.00052 34.0 15.0 194 21-232 18-244 (268)
337 PRK07121 hypothetical protein; 87.6 0.68 1.5E-05 48.7 4.5 34 368-401 20-53 (492)
338 PRK08132 FAD-dependent oxidore 87.5 0.6 1.3E-05 49.7 4.2 34 368-401 23-56 (547)
339 PRK07565 dihydroorotate dehydr 87.5 6.1 0.00013 39.5 11.1 83 13-104 104-196 (334)
340 PRK05579 bifunctional phosphop 87.5 1.7 3.6E-05 44.7 7.2 57 334-401 165-238 (399)
341 KOG1201 Hydroxysteroid 17-beta 87.5 0.81 1.7E-05 44.8 4.6 43 364-406 34-77 (300)
342 PRK10415 tRNA-dihydrouridine s 87.4 18 0.00039 36.0 14.3 90 9-110 9-102 (321)
343 TIGR03451 mycoS_dep_FDH mycoth 87.4 1.1 2.5E-05 44.7 5.9 41 367-407 176-217 (358)
344 cd08300 alcohol_DH_class_III c 87.3 1.2 2.6E-05 44.7 6.0 40 367-406 186-226 (368)
345 cd02809 alpha_hydroxyacid_oxid 87.2 21 0.00046 35.0 14.6 80 13-105 118-200 (299)
346 PRK05692 hydroxymethylglutaryl 87.2 31 0.00068 33.7 18.3 195 22-231 25-259 (287)
347 TIGR01037 pyrD_sub1_fam dihydr 87.2 4.1 8.8E-05 39.9 9.5 84 13-105 93-189 (300)
348 cd08293 PTGR2 Prostaglandin re 87.2 1.1 2.5E-05 44.1 5.7 40 368-407 155-196 (345)
349 PRK08195 4-hyroxy-2-oxovalerat 87.1 10 0.00023 38.0 12.5 106 69-184 9-132 (337)
350 PLN02572 UDP-sulfoquinovose sy 87.0 1.1 2.4E-05 46.5 5.8 36 364-399 43-79 (442)
351 PRK13581 D-3-phosphoglycerate 87.0 1.1 2.4E-05 47.7 5.8 37 364-400 136-172 (526)
352 PLN03154 putative allyl alcoho 86.9 1.3 2.8E-05 44.3 5.9 41 367-407 158-199 (348)
353 COG0159 TrpA Tryptophan syntha 86.9 31 0.00067 33.4 17.9 43 10-52 18-60 (265)
354 PLN02586 probable cinnamyl alc 86.9 1.1 2.3E-05 45.1 5.3 37 367-403 183-219 (360)
355 PRK06481 fumarate reductase fl 86.8 0.74 1.6E-05 48.7 4.4 33 369-401 62-94 (506)
356 cd08281 liver_ADH_like1 Zinc-d 86.7 1.2 2.6E-05 44.8 5.6 40 367-406 191-231 (371)
357 PRK12999 pyruvate carboxylase; 86.7 62 0.0013 38.0 20.0 209 22-230 554-787 (1146)
358 cd08301 alcohol_DH_plants Plan 86.6 1.3 2.8E-05 44.4 5.9 40 367-406 187-227 (369)
359 PTZ00188 adrenodoxin reductase 86.6 0.98 2.1E-05 47.6 5.0 35 367-401 38-73 (506)
360 cd04747 OYE_like_5_FMN Old yel 86.6 6.1 0.00013 40.0 10.6 80 25-104 146-254 (361)
361 cd08231 MDR_TM0436_like Hypoth 86.6 1.3 2.8E-05 44.1 5.7 41 367-407 177-218 (361)
362 cd02932 OYE_YqiM_FMN Old yello 86.4 6.6 0.00014 39.2 10.8 79 23-104 154-260 (336)
363 PRK10309 galactitol-1-phosphat 86.4 1.4 3E-05 43.7 5.9 40 367-406 160-200 (347)
364 cd00377 ICL_PEPM Members of th 86.4 26 0.00056 33.4 14.3 122 56-187 61-203 (243)
365 PRK10669 putative cation:proto 86.3 1 2.3E-05 48.1 5.2 40 369-408 418-457 (558)
366 TIGR01037 pyrD_sub1_fam dihydr 86.3 35 0.00075 33.3 16.7 40 63-110 89-130 (300)
367 TIGR00612 ispG_gcpE 1-hydroxy- 86.3 3.1 6.7E-05 41.4 7.9 50 134-185 28-77 (346)
368 PTZ00170 D-ribulose-5-phosphat 86.2 29 0.00062 32.7 14.4 88 8-108 4-98 (228)
369 cd04734 OYE_like_3_FMN Old yel 86.1 4.9 0.00011 40.4 9.6 78 25-105 143-249 (343)
370 TIGR02441 fa_ox_alpha_mit fatt 86.1 1.1 2.3E-05 49.8 5.3 38 369-406 336-373 (737)
371 COG0476 ThiF Dinucleotide-util 86.0 0.89 1.9E-05 43.5 4.1 34 368-401 30-64 (254)
372 cd02803 OYE_like_FMN_family Ol 86.0 5.6 0.00012 39.3 9.9 78 25-105 143-248 (327)
373 PLN02712 arogenate dehydrogena 86.0 1.6 3.4E-05 48.0 6.4 39 364-402 365-403 (667)
374 KOG2015 NEDD8-activating compl 85.9 1.1 2.3E-05 44.3 4.5 32 368-399 40-72 (422)
375 cd08242 MDR_like Medium chain 85.8 1.5 3.3E-05 42.7 5.7 41 367-407 155-195 (319)
376 COG0821 gcpE 1-hydroxy-2-methy 85.8 3.5 7.5E-05 41.0 7.9 59 125-185 21-79 (361)
377 PRK08005 epimerase; Validated 85.8 28 0.00061 32.5 13.8 58 12-71 2-65 (210)
378 cd06557 KPHMT-like Ketopantoat 85.8 13 0.00028 35.9 11.8 124 57-190 65-203 (254)
379 PRK11790 D-3-phosphoglycerate 85.8 1.3 2.9E-05 45.6 5.4 38 364-401 147-184 (409)
380 TIGR02825 B4_12hDH leukotriene 85.7 1.7 3.6E-05 42.6 6.0 41 367-407 138-179 (325)
381 cd02931 ER_like_FMN Enoate red 85.7 6.1 0.00013 40.3 10.2 81 26-106 153-273 (382)
382 cd07943 DRE_TIM_HOA 4-hydroxy- 85.6 13 0.00028 35.7 11.9 105 69-180 6-125 (263)
383 TIGR00742 yjbN tRNA dihydrouri 85.4 8.7 0.00019 38.2 10.9 96 9-108 54-164 (318)
384 PRK00278 trpC indole-3-glycero 85.4 36 0.00078 32.7 15.3 110 25-158 72-185 (260)
385 PRK00366 ispG 4-hydroxy-3-meth 85.4 3.6 7.7E-05 41.3 7.9 61 123-185 25-85 (360)
386 PRK15409 bifunctional glyoxyla 85.3 1.4 3.1E-05 43.9 5.2 38 364-401 141-179 (323)
387 cd07943 DRE_TIM_HOA 4-hydroxy- 85.3 36 0.00078 32.6 19.8 196 21-231 20-239 (263)
388 COG0111 SerA Phosphoglycerate 85.3 1.4 3E-05 44.0 5.2 37 364-400 138-174 (324)
389 COG0493 GltD NADPH-dependent g 85.2 1.1 2.3E-05 47.0 4.4 36 365-400 120-155 (457)
390 PF05853 DUF849: Prokaryotic p 85.2 25 0.00055 34.1 13.8 142 21-190 24-176 (272)
391 TIGR03329 Phn_aa_oxid putative 85.2 1 2.3E-05 46.8 4.4 32 369-400 25-58 (460)
392 KOG0685 Flavin-containing amin 85.1 1.2 2.5E-05 46.3 4.5 32 367-398 20-52 (498)
393 cd04730 NPD_like 2-Nitropropan 85.1 13 0.00028 34.7 11.5 127 10-161 3-130 (236)
394 PLN02306 hydroxypyruvate reduc 85.1 1.4 3E-05 45.1 5.2 38 364-401 161-199 (386)
395 PLN02514 cinnamyl-alcohol dehy 85.1 1.7 3.7E-05 43.4 5.8 40 367-406 180-219 (357)
396 PLN02827 Alcohol dehydrogenase 85.0 1.7 3.7E-05 43.9 5.8 40 367-406 193-233 (378)
397 COG1052 LdhA Lactate dehydroge 85.0 1.4 3.1E-05 44.0 5.0 38 364-401 142-179 (324)
398 PRK11154 fadJ multifunctional 84.9 1.4 3.1E-05 48.7 5.5 38 368-405 309-347 (708)
399 cd08234 threonine_DH_like L-th 84.8 1.8 3.8E-05 42.3 5.7 41 367-407 159-200 (334)
400 cd08296 CAD_like Cinnamyl alco 84.8 1.9 4.1E-05 42.5 5.8 40 367-406 163-202 (333)
401 PTZ00367 squalene epoxidase; P 84.8 1.1 2.4E-05 48.2 4.4 33 369-401 34-66 (567)
402 cd02930 DCR_FMN 2,4-dienoyl-Co 84.8 8.4 0.00018 38.8 10.6 82 25-106 139-245 (353)
403 cd08277 liver_alcohol_DH_like 84.8 1.9 4.1E-05 43.2 5.9 40 367-406 184-224 (365)
404 COG2423 Predicted ornithine cy 84.7 1.7 3.7E-05 43.5 5.5 41 368-408 130-172 (330)
405 cd04724 Tryptophan_synthase_al 84.7 37 0.0008 32.3 17.8 32 15-46 6-37 (242)
406 TIGR02440 FadJ fatty oxidation 84.6 1.5 3.3E-05 48.3 5.6 37 369-405 305-342 (699)
407 cd08299 alcohol_DH_class_I_II_ 84.6 1.9 4E-05 43.5 5.8 41 367-407 190-231 (373)
408 cd08294 leukotriene_B4_DH_like 84.6 2.1 4.4E-05 41.7 6.0 41 367-407 143-184 (329)
409 KOG3040 Predicted sugar phosph 84.5 24 0.00053 33.1 12.3 174 83-295 49-225 (262)
410 cd08289 MDR_yhfp_like Yhfp put 84.4 2 4.3E-05 41.8 5.8 40 368-407 147-187 (326)
411 PLN02712 arogenate dehydrogena 84.4 2.3 4.9E-05 46.7 6.7 37 367-403 51-87 (667)
412 PF02581 TMP-TENI: Thiamine mo 84.4 26 0.00056 31.5 12.7 135 23-187 12-156 (180)
413 PRK08255 salicylyl-CoA 5-hydro 84.4 5.1 0.00011 44.7 9.6 78 25-105 553-658 (765)
414 TIGR01740 pyrF orotidine 5'-ph 84.3 21 0.00046 33.1 12.4 104 13-126 1-105 (213)
415 cd08259 Zn_ADH5 Alcohol dehydr 84.2 2.2 4.7E-05 41.4 6.0 41 367-407 162-203 (332)
416 cd08233 butanediol_DH_like (2R 84.0 2.1 4.6E-05 42.4 5.9 40 367-406 172-212 (351)
417 PRK06512 thiamine-phosphate py 83.9 28 0.0006 32.7 13.0 134 23-187 26-171 (221)
418 cd08260 Zn_ADH6 Alcohol dehydr 83.9 2.2 4.8E-05 42.0 6.0 41 367-407 165-205 (345)
419 PF10566 Glyco_hydro_97: Glyco 83.9 4.2 9.1E-05 39.6 7.6 96 80-175 27-141 (273)
420 cd01079 NAD_bind_m-THF_DH NAD 83.8 2.1 4.6E-05 39.5 5.2 35 364-398 58-93 (197)
421 PRK00507 deoxyribose-phosphate 83.8 39 0.00084 31.8 13.9 143 20-176 19-176 (221)
422 PF00290 Trp_syntA: Tryptophan 83.7 28 0.00061 33.6 13.2 169 14-198 15-217 (259)
423 cd08255 2-desacetyl-2-hydroxye 83.7 1.9 4.1E-05 41.0 5.2 39 367-405 97-136 (277)
424 cd00019 AP2Ec AP endonuclease 83.6 40 0.00087 32.3 14.5 26 20-48 10-35 (279)
425 cd05284 arabinose_DH_like D-ar 83.6 2.1 4.7E-05 41.9 5.7 41 367-407 167-208 (340)
426 COG0334 GdhA Glutamate dehydro 83.6 2.7 5.9E-05 43.0 6.4 52 340-400 188-239 (411)
427 PF04551 GcpE: GcpE protein; 83.6 4.2 9.1E-05 40.8 7.5 50 134-185 25-79 (359)
428 TIGR01373 soxB sarcosine oxida 83.5 1.4 3.1E-05 44.7 4.5 33 368-400 30-64 (407)
429 PTZ00139 Succinate dehydrogena 83.5 1.3 2.8E-05 48.2 4.3 31 370-400 31-61 (617)
430 cd01493 APPBP1_RUB Ubiquitin a 83.5 1.3 2.7E-05 46.0 4.1 35 366-400 18-53 (425)
431 PRK08294 phenol 2-monooxygenas 83.5 1.1 2.4E-05 48.8 3.8 34 369-402 33-67 (634)
432 TIGR03217 4OH_2_O_val_ald 4-hy 83.4 21 0.00045 35.8 12.6 152 69-232 8-181 (333)
433 KOG0069 Glyoxylate/hydroxypyru 83.4 1.8 3.9E-05 43.3 4.9 40 364-403 158-197 (336)
434 cd08253 zeta_crystallin Zeta-c 83.3 2.4 5.3E-05 40.5 5.8 41 367-407 144-185 (325)
435 PRK02102 ornithine carbamoyltr 83.2 32 0.0007 34.4 13.8 154 218-399 14-188 (331)
436 cd05276 p53_inducible_oxidored 83.2 2.4 5.3E-05 40.4 5.8 41 367-407 139-180 (323)
437 cd04733 OYE_like_2_FMN Old yel 83.1 7.6 0.00016 38.8 9.4 79 24-105 150-256 (338)
438 COG1830 FbaB DhnA-type fructos 83.1 44 0.00095 32.3 14.0 127 23-154 97-231 (265)
439 cd00762 NAD_bind_malic_enz NAD 83.0 2.1 4.5E-05 41.2 5.0 37 364-400 21-68 (254)
440 PF00809 Pterin_bind: Pterin b 82.9 0.84 1.8E-05 42.6 2.3 111 67-189 2-125 (210)
441 COG1902 NemA NADH:flavin oxido 82.9 8.1 0.00018 39.2 9.5 89 17-105 139-258 (363)
442 PLN02178 cinnamyl-alcohol dehy 82.8 2.4 5.2E-05 42.9 5.8 37 367-403 178-214 (375)
443 PF01408 GFO_IDH_MocA: Oxidore 82.8 3.4 7.3E-05 34.1 5.8 39 370-408 2-43 (120)
444 PRK07535 methyltetrahydrofolat 82.7 20 0.00042 34.7 11.7 119 17-153 19-151 (261)
445 cd00739 DHPS DHPS subgroup of 82.7 11 0.00024 36.3 9.9 104 73-188 13-128 (257)
446 PRK08227 autoinducer 2 aldolas 82.5 24 0.00053 34.2 12.2 120 23-154 94-220 (264)
447 PRK13977 myosin-cross-reactive 82.4 2.3 4.9E-05 45.7 5.6 37 365-401 19-59 (576)
448 TIGR00612 ispG_gcpE 1-hydroxy- 82.3 49 0.0011 33.2 14.3 148 20-183 31-195 (346)
449 COG1148 HdrA Heterodisulfide r 82.2 1.7 3.6E-05 45.4 4.3 35 368-402 124-158 (622)
450 PRK13585 1-(5-phosphoribosyl)- 82.2 44 0.00096 31.3 14.8 150 19-186 31-199 (241)
451 cd08261 Zn_ADH7 Alcohol dehydr 82.2 2.8 6E-05 41.2 5.9 40 367-406 159-198 (337)
452 PLN02661 Putative thiazole syn 82.1 1.8 3.9E-05 43.7 4.5 33 369-401 93-126 (357)
453 PLN00128 Succinate dehydrogena 82.1 1.6 3.4E-05 47.7 4.3 31 370-400 52-82 (635)
454 PRK11320 prpB 2-methylisocitra 82.0 55 0.0012 32.2 16.1 119 57-185 71-207 (292)
455 PF03949 Malic_M: Malic enzyme 82.0 2.6 5.6E-05 40.6 5.3 37 364-400 21-68 (255)
456 cd08269 Zn_ADH9 Alcohol dehydr 82.0 2.7 5.8E-05 40.4 5.6 39 367-405 129-168 (312)
457 PRK00779 ornithine carbamoyltr 81.9 34 0.00073 33.8 13.3 154 218-399 11-184 (304)
458 COG3142 CutC Uncharacterized p 81.7 48 0.001 31.4 14.0 151 29-189 14-179 (241)
459 cd00408 DHDPS-like Dihydrodipi 81.7 41 0.00088 32.4 13.7 103 82-188 15-131 (281)
460 PLN02697 lycopene epsilon cycl 81.7 1.6 3.6E-05 46.4 4.2 32 369-400 109-140 (529)
461 PRK06015 keto-hydroxyglutarate 81.7 24 0.00052 32.8 11.4 119 13-161 6-125 (201)
462 COG1086 Predicted nucleoside-d 81.6 2.6 5.6E-05 44.8 5.5 41 366-406 248-290 (588)
463 PRK03562 glutathione-regulated 81.5 2.3 5E-05 46.2 5.4 41 368-408 400-440 (621)
464 PRK00311 panB 3-methyl-2-oxobu 81.5 24 0.00051 34.2 11.7 123 57-190 68-206 (264)
465 PRK08883 ribulose-phosphate 3- 81.4 34 0.00074 32.1 12.6 58 12-71 1-65 (220)
466 PRK11199 tyrA bifunctional cho 81.4 1.9 4.2E-05 43.8 4.5 34 368-401 98-132 (374)
467 PRK07573 sdhA succinate dehydr 81.1 1.8 3.9E-05 47.2 4.4 31 369-399 36-66 (640)
468 PRK07565 dihydroorotate dehydr 81.0 16 0.00035 36.5 10.9 42 61-110 98-139 (334)
469 TIGR01316 gltA glutamate synth 81.0 2.2 4.8E-05 44.3 4.9 35 366-400 270-304 (449)
470 cd05280 MDR_yhdh_yhfp Yhdh and 81.0 3.3 7.2E-05 40.0 5.9 40 368-407 147-187 (325)
471 cd08268 MDR2 Medium chain dehy 81.0 3.4 7.3E-05 39.6 5.9 41 367-407 144-185 (328)
472 PLN02464 glycerol-3-phosphate 80.9 1.9 4.2E-05 46.9 4.5 32 369-400 72-103 (627)
473 PRK12831 putative oxidoreducta 80.9 2.2 4.8E-05 44.6 4.8 35 366-400 279-313 (464)
474 PRK09754 phenylpropionate diox 80.6 2.4 5.2E-05 43.1 4.9 34 367-400 143-176 (396)
475 PF00743 FMO-like: Flavin-bind 80.6 1.8 4E-05 46.1 4.1 38 364-401 179-216 (531)
476 PLN02858 fructose-bisphosphate 80.4 2.7 5.9E-05 49.8 5.8 40 369-408 325-364 (1378)
477 cd08266 Zn_ADH_like1 Alcohol d 80.4 3.7 8.1E-05 39.7 6.0 41 367-407 166-207 (342)
478 PRK08745 ribulose-phosphate 3- 80.4 53 0.0011 31.0 14.5 59 12-72 5-70 (223)
479 PLN00112 malate dehydrogenase 80.3 2.3 4.9E-05 44.3 4.6 40 369-408 101-150 (444)
480 PLN02253 xanthoxin dehydrogena 80.2 2.4 5.2E-05 40.5 4.5 39 369-407 20-58 (280)
481 PTZ00058 glutathione reductase 80.2 2.1 4.6E-05 45.9 4.5 31 370-400 50-80 (561)
482 PLN02702 L-idonate 5-dehydroge 80.2 3.5 7.7E-05 41.1 5.9 39 367-405 181-220 (364)
483 cd05279 Zn_ADH1 Liver alcohol 80.1 3.6 7.8E-05 41.2 5.9 40 367-406 183-223 (365)
484 cd08292 ETR_like_2 2-enoyl thi 80.0 3.5 7.6E-05 39.9 5.7 41 367-407 139-180 (324)
485 PRK03659 glutathione-regulated 80.0 2.7 5.8E-05 45.6 5.2 40 369-408 401-440 (601)
486 cd08270 MDR4 Medium chain dehy 80.0 3.6 7.9E-05 39.4 5.7 41 367-407 132-173 (305)
487 PRK10569 NAD(P)H-dependent FMN 79.8 5.9 0.00013 36.3 6.7 111 238-381 1-112 (191)
488 cd05285 sorbitol_DH Sorbitol d 79.7 3.6 7.7E-05 40.6 5.7 41 366-406 161-202 (343)
489 cd05288 PGDH Prostaglandin deh 79.7 3.9 8.5E-05 39.7 5.9 41 367-407 145-186 (329)
490 PRK04165 acetyl-CoA decarbonyl 79.7 43 0.00093 35.0 13.7 159 8-188 89-269 (450)
491 PRK00856 pyrB aspartate carbam 79.7 67 0.0014 31.8 14.8 156 218-399 12-190 (305)
492 cd07937 DRE_TIM_PC_TC_5S Pyruv 79.7 29 0.00062 33.7 11.8 110 69-180 4-131 (275)
493 TIGR02824 quinone_pig3 putativ 79.6 4.1 9E-05 39.0 6.0 40 367-406 139-179 (325)
494 cd05286 QOR2 Quinone oxidoredu 79.6 4 8.6E-05 38.8 5.9 41 367-407 136-177 (320)
495 PRK13748 putative mercuric red 79.6 2.3 5.1E-05 45.3 4.6 32 369-400 99-130 (561)
496 TIGR00521 coaBC_dfp phosphopan 79.4 8.8 0.00019 39.4 8.5 58 334-401 161-235 (390)
497 PLN02487 zeta-carotene desatur 79.3 2.5 5.4E-05 45.5 4.7 34 368-401 75-108 (569)
498 KOG0399 Glutamate synthase [Am 79.3 2.2 4.8E-05 48.7 4.2 36 366-401 1783-1818(2142)
499 PLN02172 flavin-containing mon 79.2 2.3 5.1E-05 44.5 4.4 37 365-401 201-237 (461)
500 cd08254 hydroxyacyl_CoA_DH 6-h 79.2 4.1 8.8E-05 39.6 5.9 41 367-407 165-205 (338)
No 1
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=100.00 E-value=4.7e-102 Score=811.78 Aligned_cols=404 Identities=54% Similarity=0.923 Sum_probs=368.7
Q ss_pred CcccCCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCC
Q 015310 2 GVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYE 81 (409)
Q Consensus 2 ~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~ 81 (409)
|+--|.+++|+|||||++++.+|++.+++++...++|+||||+|+|.+..+.+++..+++..++|+|||+|+++|||.++
T Consensus 14 ~~~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~eGG~~~ 93 (529)
T PLN02520 14 GSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKWEGGQYE 93 (529)
T ss_pred cccccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHHHCCCCC
Confidence 45567889999999999999999999999887789999999999999876656677777777899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310 82 GDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (409)
Q Consensus 82 ~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~ 161 (409)
+++++|+++|+.+++.|+||||||++..++..+.+..+++.++++|+|||||++||+.++|.+++++|+++||||+|||+
T Consensus 94 ~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaDi~Kia~ 173 (529)
T PLN02520 94 GDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIAT 173 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 99999999999999999999999999987655555466778999999999999999999999999999999999999999
Q ss_pred ecCCHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCC--CCCCCCCCCHHHHHhhhhhccccccce
Q 015310 162 SVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLK--GTPVLGLPTVESLRQTYKVEHINADTK 239 (409)
Q Consensus 162 ~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~--~~sAPGQ~~~~~l~~~~~~~~i~~~~~ 239 (409)
||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++ .++||||++++++++++++.+++.+++
T Consensus 174 ~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~t~ 253 (529)
T PLN02520 174 TALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDTK 253 (529)
T ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhcccCCce
Confidence 999999999999988878899999999999999999999999999999987 459999999999999999999998899
Q ss_pred EEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhcc
Q 015310 240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAA 319 (409)
Q Consensus 240 ~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igA 319 (409)
+|||||+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|+|+|||||||+++++++|++|+.|+.+||
T Consensus 254 ~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGA 333 (529)
T PLN02520 254 VYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGA 333 (529)
T ss_pred EEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310 320 VNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 320 vNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR 399 (409)
||||++++++|+|+||||||.||+++|++.+...+. .+..+.++++|+++|+|+||+|||++++|.+.|++|+++||
T Consensus 334 VNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~---~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR 410 (529)
T PLN02520 334 INTIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGS---SPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANR 410 (529)
T ss_pred ceEEEEeCCCCEEEEEcccHHHHHHHHHhhhccccc---ccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 999998622789999999999999999764321000 00012457789999999999999999999999999999999
Q ss_pred ChHHHHhhh
Q 015310 400 DFEQSLLLL 408 (409)
Q Consensus 400 ~~~ka~~la 408 (409)
+.+++++|+
T Consensus 411 ~~e~a~~la 419 (529)
T PLN02520 411 TYERAKELA 419 (529)
T ss_pred CHHHHHHHH
Confidence 999999875
No 2
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=100.00 E-value=2.3e-91 Score=723.53 Aligned_cols=368 Identities=26% Similarity=0.445 Sum_probs=336.1
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (409)
+|||||++++.+|++.+++.+. .++|+||||+|+|++.++. ++..+++..+.||+ |+|+.+ ++++++|+++|
T Consensus 1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~-~~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l 72 (477)
T PRK09310 1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDL-ELKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM 72 (477)
T ss_pred CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHH-HHHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence 6999999999999999999886 6799999999999877554 37777664466766 999987 46899999999
Q ss_pred HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHH
Q 015310 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIAR 171 (409)
Q Consensus 92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ 171 (409)
+.+++.|+||||||++.+++.++++..+ ++++|+|+|||||+. +++.+++++|+++||||+|||+||++.+|+++
T Consensus 73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~~----~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~ 147 (477)
T PRK09310 73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSEH----EDIIQLYNEMLASAADYYKIAVSSSSSTDLLN 147 (477)
T ss_pred HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCCc----chHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence 9999999999999999988887777544 359999999999942 68999999999999999999999999999999
Q ss_pred HHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCC--CCCCCCCCHHHHHhhhhhccccccceEEeeeccCCc
Q 015310 172 IFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 249 (409)
Q Consensus 172 ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~--~sAPGQ~~~~~l~~~~~~~~i~~~~~~~~viG~pi~ 249 (409)
+++++.+.+.|+|+||||+.|++||+++++|||++||+++.. ++||||++++++. .+++.+++.++++|||+|+||+
T Consensus 148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~ 226 (477)
T PRK09310 148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD 226 (477)
T ss_pred HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence 999998888899999999999999999999999999999865 4699999999998 4678888888999999999999
Q ss_pred ccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeC
Q 015310 250 HSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRP 327 (409)
Q Consensus 250 hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~ 327 (409)
||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||++|++++|++|+.|+.+||||||+++
T Consensus 227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~- 305 (477)
T PRK09310 227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR- 305 (477)
T ss_pred cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence 99999999999999999999999988 479999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 328 SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 328 ~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
+|+|+||||||.||+.+|++. +.++++++++|+|+||+|+++++.|.+.|++|+++||+.++++++
T Consensus 306 -~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~l 371 (477)
T PRK09310 306 -NGKIEGYNTDGEGLFSLLKQK-------------NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEAL 371 (477)
T ss_pred -CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 999999999999999998653 145678999999999999999999999999999999999998876
Q ss_pred h
Q 015310 408 L 408 (409)
Q Consensus 408 a 408 (409)
+
T Consensus 372 a 372 (477)
T PRK09310 372 A 372 (477)
T ss_pred H
Confidence 4
No 3
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=2.3e-57 Score=434.24 Aligned_cols=228 Identities=24% Similarity=0.398 Sum_probs=207.3
Q ss_pred CCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChh----HHHHHHhcC-CCcEEEEeccCCCCCCC
Q 015310 6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK----DLEIILTKK-PLPVLIVYRPKWAGGLY 80 (409)
Q Consensus 6 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~----~l~~l~~~~-~~PiI~T~R~~~eGG~~ 80 (409)
...++|+|||||.+++.+|++++++++...++|+||||+|+|.+.++.+ .+..+++.. ++|+|||+|+++|||.+
T Consensus 11 ~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~ 90 (253)
T PRK02412 11 IGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEI 90 (253)
T ss_pred eCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCC
Confidence 4578999999999999999999999888889999999999998754432 233444433 68999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC-CcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310 81 EGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 158 (409)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK 158 (409)
+.++++|+++|+.+++.| +||||||++.+.+.+++++ .+++.++++|+|||||++||+.++|.+++++|+++||||+|
T Consensus 91 ~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivK 170 (253)
T PRK02412 91 ALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVK 170 (253)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999 9999999999888888887 45678999999999999999999999999999999999999
Q ss_pred EEeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310 159 LVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233 (409)
Q Consensus 159 ia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~ 233 (409)
+|+||++.+|++++++++.+ .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++.++
T Consensus 171 ia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPGQ~~~~el~~i~~~l~ 250 (253)
T PRK02412 171 IAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRILEILH 250 (253)
T ss_pred EEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 99999999999999998754 3689999999999999999999999999999999999999999999999998765
No 4
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-56 Score=415.63 Aligned_cols=223 Identities=23% Similarity=0.383 Sum_probs=200.6
Q ss_pred CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 015310 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR 87 (409)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (409)
+|+||+|+.+.+.+++.++++.....++|++|||+|+|+.. +..+....+++. ...|+|||+|+.+|||.|++++++|
T Consensus 1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~ 80 (231)
T COG0710 1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY 80 (231)
T ss_pred CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence 58999999999999999999999999999999999999922 112333444443 3679999999999999999999999
Q ss_pred HHHHHHHHHcC-CcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015310 88 LEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (409)
Q Consensus 88 ~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~ 166 (409)
+++++.+++.+ ++|||||++.+.+.+++++..++ ..++|+|||||++||+++++.+++.+|.+.||||+|+|+||++.
T Consensus 81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~-~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~ 159 (231)
T COG0710 81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAK-KHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK 159 (231)
T ss_pred HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccc-cCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence 99999999986 99999999999887777774432 22399999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcc---CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310 167 TEIARIFQLLSH---CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233 (409)
Q Consensus 167 ~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~ 233 (409)
+|++++++++.. ++.|+|+||||+.|++||+++++|||++||+++++++||||++++++++++..++
T Consensus 160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~sAPGQi~v~~l~~~~~~l~ 229 (231)
T COG0710 160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLLG 229 (231)
T ss_pred HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCCCCCCCCCHHHHHHHHHHhh
Confidence 999999999886 6899999999999999999999999999999999999999999999999987654
No 5
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=100.00 E-value=1.1e-55 Score=416.91 Aligned_cols=217 Identities=29% Similarity=0.504 Sum_probs=194.8
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH----Hh-cCCCcEEEEeccCCCCCCCCCCHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LT-KKPLPVLIVYRPKWAGGLYEGDEHK 86 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l----~~-~~~~PiI~T~R~~~eGG~~~~~~~~ 86 (409)
+|||||++++.+++..+++++ ..|||+||||+|+|.+..+.+.+..+ +. ..++|+|||+|+++|||.++.++++
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~ 79 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE 79 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence 599999999999999999987 78999999999999875433222222 11 1478999999999999999999999
Q ss_pred HHHHHHHH-HHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310 87 RLEALHLA-EDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN 164 (409)
Q Consensus 87 ~~~ll~~~-~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~ 164 (409)
|+++++.+ .+.++||||||++.+++..++++ .++++++|+|+|||||++||+.++|.+++++|+++||||+|+|+||+
T Consensus 80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~ 159 (228)
T TIGR01093 80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN 159 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence 99999998 56679999999999888887777 45678999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhh
Q 015310 165 DITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY 229 (409)
Q Consensus 165 ~~~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~ 229 (409)
+.+|+++|++++.+. ++|+|+|+||+.|++||+++++|||++||++++++|||||+++++|+++|
T Consensus 160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~ 228 (228)
T TIGR01093 160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL 228 (228)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhhC
Confidence 999999999998654 57999999999999999999999999999999999999999999999875
No 6
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=100.00 E-value=9.5e-55 Score=409.65 Aligned_cols=217 Identities=34% Similarity=0.560 Sum_probs=186.5
Q ss_pred EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (409)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 90 (409)
||||++++.+|++++++++...++|+||||+|+|.+.+. .+++..+++..++|+|||+|+++|||.++.++++|+++
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l 80 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL 80 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence 999999999999999999877699999999999996322 35677777777999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHH
Q 015310 91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIA 170 (409)
Q Consensus 91 l~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~ 170 (409)
++.+++.|+||||||++..++........+.+++++|+|||||++||+++++.+++++|+++||||+|+|+||++.+|++
T Consensus 81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~ 160 (224)
T PF01487_consen 81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL 160 (224)
T ss_dssp HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence 99999999999999999665544333345678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhh
Q 015310 171 RIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230 (409)
Q Consensus 171 ~ll~~~~~~----~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~ 230 (409)
+|++++.+. +.|+|+|+||+.|++||+++++|||++||++.++++||||+++++|+++|+
T Consensus 161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~~~~l~~~~~ 224 (224)
T PF01487_consen 161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLTLEELREILH 224 (224)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EBHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCcHHHHHHHhC
Confidence 999998655 589999999999999999999999999999989999999999999999874
No 7
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=7.7e-54 Score=405.11 Aligned_cols=220 Identities=20% Similarity=0.341 Sum_probs=187.7
Q ss_pred CeeEEEeeccCC-HHHH-HHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH----Hh-cCCCcEEEEeccCCCCCCCCC
Q 015310 10 TTMICAPLMAQS-VEQV-LSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LT-KKPLPVLIVYRPKWAGGLYEG 82 (409)
Q Consensus 10 ~~~icv~l~~~~-~~e~-~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l----~~-~~~~PiI~T~R~~~eGG~~~~ 82 (409)
.+.||+++.... .++. .++++.. ..+||+||||+|+|++.+. +++..+ ++ ..++|+|||+|+++|||.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~-~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~ 80 (238)
T PRK13575 3 HVEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTV-DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQF 80 (238)
T ss_pred ceeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCH-HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCC
Confidence 456677777664 5555 4445443 5689999999999987543 234433 22 247899999999999999999
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEEeccC--ccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310 83 DEHKRLEALHLAEDLG-ADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 158 (409)
Q Consensus 83 ~~~~~~~ll~~~~~~g-~dyvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK 158 (409)
++++|.++++.++..+ +||||||++. ..+..+++. .+++.++++|+|||||++||+.++|.+++++|+++||||+|
T Consensus 81 ~~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~K 160 (238)
T PRK13575 81 TNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVK 160 (238)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999888776 8999999986 344556665 45678999999999999999999999999999999999999
Q ss_pred EEeecCCHhHHHHHHHHhcc----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhh
Q 015310 159 LVFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 159 ia~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~ 231 (409)
+|+||++.+|+++|++++.+ .+.|+|+|+||+.|++||+++++|||++||++++++|||||+++++|++++++
T Consensus 161 iAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~sAPGQi~v~~l~~i~~~ 237 (238)
T PRK13575 161 LAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEPQAPGQIHVTDLKAQVTL 237 (238)
T ss_pred EEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCCCCCCCCCHHHHHHHHHh
Confidence 99999999999999999754 36799999999999999999999999999999999999999999999999864
No 8
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=100.00 E-value=2.3e-53 Score=400.59 Aligned_cols=215 Identities=36% Similarity=0.561 Sum_probs=194.5
Q ss_pred eEEEeeccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCCC---ChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310 12 MICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQ---PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR 87 (409)
Q Consensus 12 ~icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (409)
+||+||.++ +.+|..++++... |+|+||||+|+|.+.. ..++++.+++..+.|+|||+|+++|||.++.++++|
T Consensus 1 ~i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~ 78 (225)
T cd00502 1 KICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY 78 (225)
T ss_pred CEEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence 589999999 9999988776643 8999999999998752 234667777666799999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015310 88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (409)
Q Consensus 88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~ 166 (409)
+++++.++++|+||||||++. +.+++++ .++++++|+|+|||+|++||+.++|.+++++|+++||||+|+|+||++.
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~ 156 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI 156 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 999999999999999999988 3444555 4557899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhh
Q 015310 167 TEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230 (409)
Q Consensus 167 ~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~ 230 (409)
+|++++++++.+. +.|+|+|+||+.|++||++++.|||++||+++++++||||+++++++++++
T Consensus 157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~~ 224 (225)
T cd00502 157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQLSVEELKQALS 224 (225)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCcCHHHHHHHHh
Confidence 9999999998655 469999999999999999999999999999999999999999999999875
No 9
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=6.1e-53 Score=392.07 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=177.4
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 88 (409)
++|+||+||++++.+++.++++. .+||+||||+|+|++.... +..+++..+.|+|||+|+++|||.+++++++|+
T Consensus 1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~ 75 (216)
T PRK13576 1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI 75 (216)
T ss_pred CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence 58999999999999999987654 5899999999999876543 333444456799999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH-h
Q 015310 89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI-T 167 (409)
Q Consensus 89 ~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~-~ 167 (409)
++|+.+++.+. ++|||++...+.. ..+.++|+|||||++||+.++|.+++++|++ ||||+|+|+||++. .
T Consensus 76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~ 146 (216)
T PRK13576 76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK 146 (216)
T ss_pred HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence 99999999985 7799997543211 1346799999999999999999999999998 99999999999985 7
Q ss_pred HHH-HHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhccc
Q 015310 168 EIA-RIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHI 234 (409)
Q Consensus 168 D~~-~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~i 234 (409)
|++ +|++ . ..+|+|+||+.| +||+++++|||++||++++++|||||+++++|++++++++-
T Consensus 147 d~l~~Ll~---~--~~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~sAPGQi~v~~l~~i~~~l~~ 208 (216)
T PRK13576 147 EVLLPLLE---Y--ENVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEPTAQGQLHYKKVKQILNYLNN 208 (216)
T ss_pred hHHHHHhc---c--cCccEEEcCCcc-HHHHHHHHhCCeeEEEecCCCCCCCCccHHHHHHHHHHHHH
Confidence 776 6664 2 245889999999 99999999999999999999999999999999999987643
No 10
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=3.6e-48 Score=363.44 Aligned_cols=206 Identities=15% Similarity=0.243 Sum_probs=174.5
Q ss_pred cCCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh--hHHHHHHhcCCCcEEEEeccCCCCCCCCC
Q 015310 5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG--KDLEIILTKKPLPVLIVYRPKWAGGLYEG 82 (409)
Q Consensus 5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T~R~~~eGG~~~~ 82 (409)
..-.++|+|||||++++.+|++.+++.+...+||+||||+|+|.+.+.. ..+...++..++|+|||+|+.
T Consensus 15 ~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~R~~-------- 86 (229)
T PRK01261 15 VIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTYRGV-------- 86 (229)
T ss_pred EeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEEcCC--------
Confidence 3446899999999999999999999998878999999999999875432 122223333489999999943
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310 83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS 162 (409)
Q Consensus 83 ~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~ 162 (409)
++ .++++.+++.++||||||++...+ + ..+..++|+|+||| ||+.++|.+++++|+++||||+|+|+|
T Consensus 87 ~~---~~~l~~a~~~~~d~vDIEl~~~~~----~-~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~~gaDI~KiAvm 154 (229)
T PRK01261 87 DA---RKYYETAIDKMPPAVDLDINLIGK----L-EFRPRNTMLMVSYH----TNNSDNMPAILDIMNEKNPDYVKVACN 154 (229)
T ss_pred CH---HHHHHHHHhhCCCEEEEEcccchh----h-hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 22 478888988779999999987332 2 23468999999999 788999999999999999999999999
Q ss_pred cCCHhHHHHHHHH----hccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhc
Q 015310 163 VNDITEIARIFQL----LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (409)
Q Consensus 163 ~~~~~D~~~ll~~----~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~ 232 (409)
|++.+|+++++.. ..+.+.|+|+||||+ ++||+++++|||++||++++++|||||+++++|+++|+.+
T Consensus 155 p~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~sAPGQi~v~~l~~~~~~~ 226 (229)
T PRK01261 155 YNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNETAPGQPKRDYYESAFIKY 226 (229)
T ss_pred CCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCCCCCCCCCHHHHHHHHHHh
Confidence 9999998877743 334578999999999 9999999999999999999999999999999999999865
No 11
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-48 Score=373.21 Aligned_cols=163 Identities=37% Similarity=0.616 Sum_probs=150.9
Q ss_pred ccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcc--cHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhc
Q 015310 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (409)
Q Consensus 234 i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~ 311 (409)
++..+++|||||+||+||+||.|||++|+++|+++.|.+++++ +|+.+++.++.+++.|+|||||||+++++++|++|
T Consensus 2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~ 81 (283)
T COG0169 2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS 81 (283)
T ss_pred CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence 3456789999999999999999999999999999999999984 99999999999999999999999999999999999
Q ss_pred HHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCC
Q 015310 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (409)
Q Consensus 312 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G 391 (409)
+.|+.+||||||+++. +|+|+||||||.||.++|++... ..+.++++++|+|||||||||+++|+++|
T Consensus 82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~-----------~~~~~~~~vlilGAGGAarAv~~aL~~~g 149 (283)
T COG0169 82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL-----------PVDVTGKRVLILGAGGAARAVAFALAEAG 149 (283)
T ss_pred HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC-----------CcccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence 9999999999999982 49999999999999999976421 13456899999999999999999999999
Q ss_pred C-eEEEEeCChHHHHhhh
Q 015310 392 A-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 392 ~-~i~v~nR~~~ka~~la 408 (409)
+ +|+|+|||.+||++|+
T Consensus 150 ~~~i~V~NRt~~ra~~La 167 (283)
T COG0169 150 AKRITVVNRTRERAEELA 167 (283)
T ss_pred CCEEEEEeCCHHHHHHHH
Confidence 8 8999999999999996
No 12
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-47 Score=370.94 Aligned_cols=158 Identities=28% Similarity=0.440 Sum_probs=146.8
Q ss_pred cceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc-------ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhh
Q 015310 237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 309 (409)
Q Consensus 237 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~ 309 (409)
++++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||+++++++|+
T Consensus 3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~ 82 (283)
T PRK14027 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE 82 (283)
T ss_pred CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence 478999999999999999999999999999999999985 4789999999889999999999999999999999
Q ss_pred hcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh
Q 015310 310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS 389 (409)
Q Consensus 310 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~ 389 (409)
+|+.|+.+||||||+++. +|+|+||||||.||+++|++.. .+.++++++|+||||+||||+|+|.+
T Consensus 83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~~-------------~~~~~k~vlilGaGGaarAi~~aL~~ 148 (283)
T PRK14027 83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-------------PNAKLDSVVQVGAGGVGNAVAYALVT 148 (283)
T ss_pred CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhcC-------------cCcCCCeEEEECCcHHHHHHHHHHHH
Confidence 999999999999999852 8999999999999999997521 24568999999999999999999999
Q ss_pred CCC-eEEEEeCChHHHHhhh
Q 015310 390 RGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 390 ~G~-~i~v~nR~~~ka~~la 408 (409)
+|+ +|+|+|||.+|+++|+
T Consensus 149 ~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 149 HGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred CCCCEEEEEcCCHHHHHHHH
Confidence 999 8999999999999986
No 13
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=100.00 E-value=9.3e-47 Score=367.09 Aligned_cols=159 Identities=30% Similarity=0.535 Sum_probs=147.4
Q ss_pred cccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP 312 (409)
Q Consensus 235 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~ 312 (409)
+..+++|||||+||+||+||.|||++|+++|+|+.|.++++ ++|+++++.++..+|.|+|||||||++|++++|++|+
T Consensus 4 ~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~~ 83 (288)
T PRK12749 4 TAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTP 83 (288)
T ss_pred CCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCH
Confidence 44678999999999999999999999999999999999998 4799999999888999999999999999999999999
Q ss_pred HHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC
Q 015310 313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA 392 (409)
Q Consensus 313 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~ 392 (409)
.|+.+||||||+++ +|+|+||||||.||+++|++. +.++++|+++|+||||+||||+++|..+|+
T Consensus 84 ~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-------------~~~~~~k~vlvlGaGGaarAi~~~l~~~g~ 148 (288)
T PRK12749 84 AAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDIKGKTMVLLGAGGASTAIGAQGAIEGL 148 (288)
T ss_pred HHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 99999999999876 899999999999999998752 145678999999999999999999999999
Q ss_pred -eEEEEeCC---hHHHHhhh
Q 015310 393 -RVVIFDID---FEQSLLLL 408 (409)
Q Consensus 393 -~i~v~nR~---~~ka~~la 408 (409)
+|+|+||+ .+|+++|+
T Consensus 149 ~~i~i~nRt~~~~~ka~~la 168 (288)
T PRK12749 149 KEIKLFNRRDEFFDKALAFA 168 (288)
T ss_pred CEEEEEeCCccHHHHHHHHH
Confidence 99999999 46888875
No 14
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=2.9e-46 Score=363.39 Aligned_cols=159 Identities=30% Similarity=0.429 Sum_probs=147.8
Q ss_pred cccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc-------ccHHHHHHHhcCCCCCeEEEcccchHHHHhhh
Q 015310 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 307 (409)
Q Consensus 235 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~ 307 (409)
+..+++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||+++++++
T Consensus 2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~ 81 (284)
T PRK12549 2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL 81 (284)
T ss_pred CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence 34578999999999999999999999999999999999986 36899999998889999999999999999999
Q ss_pred hhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHH
Q 015310 308 DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGA 387 (409)
Q Consensus 308 d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL 387 (409)
|++|+.|+.+||||||+++ +|+|+||||||.||+++|++.. .+.++++++|+|+||+||+++++|
T Consensus 82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlIlGaGGaaraia~aL 146 (284)
T PRK12549 82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-------------PDASLERVVQLGAGGAGAAVAHAL 146 (284)
T ss_pred ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-------------cCccCCEEEEECCcHHHHHHHHHH
Confidence 9999999999999999886 8999999999999999997532 245678999999999999999999
Q ss_pred HhCCC-eEEEEeCChHHHHhhh
Q 015310 388 KSRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 388 ~~~G~-~i~v~nR~~~ka~~la 408 (409)
.++|+ +|+|+||+.+|+++|+
T Consensus 147 ~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 147 LTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred HHcCCCEEEEECCCHHHHHHHH
Confidence 99999 8999999999999886
No 15
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=100.00 E-value=1.3e-45 Score=358.78 Aligned_cols=159 Identities=31% Similarity=0.473 Sum_probs=143.7
Q ss_pred cceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc---ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHH
Q 015310 237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL 313 (409)
Q Consensus 237 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~ 313 (409)
.+++|||||+||+||+||.|||++|+++|+|+.|.++++ +++.++++.++ .+|.|+|||||||+++++++|++|+.
T Consensus 4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~ 82 (282)
T TIGR01809 4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDR 82 (282)
T ss_pred CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHH
Confidence 367899999999999999999999999999999999987 36888888774 49999999999999999999999999
Q ss_pred HHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-
Q 015310 314 AQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA- 392 (409)
Q Consensus 314 A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~- 392 (409)
|+.+||||||++++ +|+|+||||||.||+.+|++... ..++++++++||||||+|||++++|.++|+
T Consensus 83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~-----------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~ 150 (282)
T TIGR01809 83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK-----------FEPLAGFRGLVIGAGGTSRAAVYALASLGVT 150 (282)
T ss_pred HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC-----------ccccCCceEEEEcCcHHHHHHHHHHHHcCCC
Confidence 99999999999852 88999999999999999975310 013578999999999999999999999999
Q ss_pred eEEEEeCChHHHHhhh
Q 015310 393 RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 393 ~i~v~nR~~~ka~~la 408 (409)
+|+|+|||.+|+++|+
T Consensus 151 ~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 151 DITVINRNPDKLSRLV 166 (282)
T ss_pred eEEEEeCCHHHHHHHH
Confidence 8999999999999986
No 16
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-45 Score=355.80 Aligned_cols=160 Identities=32% Similarity=0.521 Sum_probs=147.6
Q ss_pred ccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhc
Q 015310 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (409)
Q Consensus 234 i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~ 311 (409)
++..+++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|+|+|||||||+++++++|++|
T Consensus 5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~ 84 (289)
T PRK12548 5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS 84 (289)
T ss_pred cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence 455678899999999999999999999999999999999998 479999999988899999999999999999999999
Q ss_pred HHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCC
Q 015310 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (409)
Q Consensus 312 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G 391 (409)
+.|+.+||||||+++ +|+|+||||||.||+.+|++. ...+++|+++|+||||+|||++++|.+.|
T Consensus 85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlI~GAGGagrAia~~La~~G 149 (289)
T PRK12548 85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREH-------------GVDVKGKKLTVIGAGGAATAIQVQCALDG 149 (289)
T ss_pred HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999887 899999999999999998753 13467899999999999999999999999
Q ss_pred C-eEEEEeCCh---HHHHhhh
Q 015310 392 A-RVVIFDIDF---EQSLLLL 408 (409)
Q Consensus 392 ~-~i~v~nR~~---~ka~~la 408 (409)
+ +|+|+||+. +++++++
T Consensus 150 ~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 150 AKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred CCEEEEEeCCchHHHHHHHHH
Confidence 9 699999997 7887764
No 17
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-44 Score=348.64 Aligned_cols=158 Identities=31% Similarity=0.455 Sum_probs=145.1
Q ss_pred cccccce-EEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhc
Q 015310 233 HINADTK-VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (409)
Q Consensus 233 ~i~~~~~-~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~ 311 (409)
.++++++ +|||||+| ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++|
T Consensus 4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~ 81 (272)
T PRK12550 4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD 81 (272)
T ss_pred cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence 3456677 49999999 77889999999999999999999998899999999988899999999999999999999999
Q ss_pred HHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCC
Q 015310 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (409)
Q Consensus 312 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G 391 (409)
+.|+.+||||||+++ +|+|+||||||.||+++|++. + .. .+++++|+||||+|||++++|.++|
T Consensus 82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~----~---------~~-~~~~vlilGaGGaarAi~~aL~~~g 145 (272)
T PRK12550 82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY----Q---------VP-PDLVVALRGSGGMAKAVAAALRDAG 145 (272)
T ss_pred HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc----C---------CC-CCCeEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999887 899999999999999998752 1 22 3568999999999999999999999
Q ss_pred C-eEEEEeCChHHHHhhh
Q 015310 392 A-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 392 ~-~i~v~nR~~~ka~~la 408 (409)
+ +|+|+||+.+|+++|+
T Consensus 146 ~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 146 FTDGTIVARNEKTGKALA 163 (272)
T ss_pred CCEEEEEeCCHHHHHHHH
Confidence 9 8999999999999986
No 18
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-44 Score=351.54 Aligned_cols=160 Identities=33% Similarity=0.611 Sum_probs=148.9
Q ss_pred cccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP 312 (409)
Q Consensus 235 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~ 312 (409)
+..+++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus 2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~ 81 (278)
T PRK00258 2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE 81 (278)
T ss_pred CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence 45678999999999999999999999999999999999999 6899999999888999999999999999999999999
Q ss_pred HHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC
Q 015310 313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA 392 (409)
Q Consensus 313 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~ 392 (409)
.|+.+||||||+++ +|+|+||||||.||+++|++.+ +.++++++++|+|+||+||+++++|..+|+
T Consensus 82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~------------~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~ 147 (278)
T PRK00258 82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL------------GVDLKGKRILILGAGGAARAVILPLLDLGV 147 (278)
T ss_pred HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhcc------------CCCCCCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence 99999999999976 8999999999999999987532 135678999999999999999999999996
Q ss_pred -eEEEEeCChHHHHhhh
Q 015310 393 -RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 393 -~i~v~nR~~~ka~~la 408 (409)
+|+|+||+.+++++++
T Consensus 148 ~~V~v~~R~~~~a~~l~ 164 (278)
T PRK00258 148 AEITIVNRTVERAEELA 164 (278)
T ss_pred CEEEEEeCCHHHHHHHH
Confidence 9999999999998875
No 19
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=100.00 E-value=5.3e-43 Score=338.67 Aligned_cols=155 Identities=34% Similarity=0.588 Sum_probs=144.3
Q ss_pred eEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHH
Q 015310 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316 (409)
Q Consensus 239 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~ 316 (409)
++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||+++++++|++|+.|+.
T Consensus 1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~ 80 (270)
T TIGR00507 1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL 80 (270)
T ss_pred CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence 4799999999999999999999999999999999998 48999999998889999999999999999999999999999
Q ss_pred hccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEE
Q 015310 317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396 (409)
Q Consensus 317 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v 396 (409)
+||||||+++ +|+|+||||||.||+++|++. . ...++++++|+|+||+|++++++|.+.|++|+|
T Consensus 81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-~------------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v 145 (270)
T TIGR00507 81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-I------------PLRPNQRVLIIGAGGAARAVALPLLKADCNVII 145 (270)
T ss_pred hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-C------------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence 9999999977 899999999999999998752 1 234578999999999999999999999999999
Q ss_pred EeCChHHHHhhh
Q 015310 397 FDIDFEQSLLLL 408 (409)
Q Consensus 397 ~nR~~~ka~~la 408 (409)
+||+.+++++++
T Consensus 146 ~~R~~~~~~~la 157 (270)
T TIGR00507 146 ANRTVSKAEELA 157 (270)
T ss_pred EeCCHHHHHHHH
Confidence 999999998875
No 20
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.96 E-value=6.5e-32 Score=267.71 Aligned_cols=338 Identities=13% Similarity=0.011 Sum_probs=282.2
Q ss_pred CCCcEEEEeccCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCH
Q 015310 63 KPLPVLIVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE 139 (409)
Q Consensus 63 ~~~PiI~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~ 139 (409)
..+|.+++.|..||||. +++...++..-+...++++.+|+|.|+....++...+-....+..+||.+.|+.+.+|
T Consensus 148 sal~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP-- 225 (595)
T KOG0692|consen 148 SALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP-- 225 (595)
T ss_pred hhHHHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC--
Confidence 47899999999999998 7777766656677788899999999998877665544333444558999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCC--CCC
Q 015310 140 EDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGT--PVL 217 (409)
Q Consensus 140 ~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~--sAP 217 (409)
+-.++..+++.||||.|++.+...+-|+. ....+....+|+++.-||+.+..+|++.|.++.++||..++.. |+|
T Consensus 226 --i~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~p 302 (595)
T KOG0692|consen 226 --IGDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVP 302 (595)
T ss_pred --chHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCcccccc
Confidence 67778888899999999999999999997 5555666689999999999999999999999999999999853 999
Q ss_pred CCCCHHHHHhhh--hhccccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEE-
Q 015310 218 GLPTVESLRQTY--KVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS- 294 (409)
Q Consensus 218 GQ~~~~~l~~~~--~~~~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~n- 294 (409)
+|...-+|.+.+ ++.+..+.++.|++.|.|++|+.+|.+||.+|.+....+.|...-++..-.++..-...++.||+
T Consensus 303 yv~mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~ 382 (595)
T KOG0692|consen 303 YVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAE 382 (595)
T ss_pred chhHHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHh
Confidence 999999999999 77888899999999999999999999999999999999988887665555555555567899998
Q ss_pred EcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCC--CCCCCCEEE
Q 015310 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFG--SPLAGRMFV 372 (409)
Q Consensus 295 VT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~vl 372 (409)
|+.|||..+...+++++..+.-+||+|+...+..|+...++|||..|.+-++...+.. +.+|..-.+ ...-.++..
T Consensus 383 vl~pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~s--~gdptti~~~as~rvket~r 460 (595)
T KOG0692|consen 383 VLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRS--SGDPTTIRDVASWRVKETER 460 (595)
T ss_pred hhccccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHHHHhhcccC--CCCCcccccccchhHHHHHH
Confidence 9999999999999999999999999999976644778999999999999998765431 111110000 122245788
Q ss_pred EEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 373 LAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 373 vlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
|+|.|+..|+..+...+.+..++|++|+ +|+-+++
T Consensus 461 ~ia~~~el~klg~~~~E~~dg~~v~~~~-~k~lk~a 495 (595)
T KOG0692|consen 461 MIAICTELRKLGATVEEGSDGYCVITPP-EKKLKLA 495 (595)
T ss_pred HHHHHHHHHHhcccccccCceEEEeCCc-hHhccch
Confidence 9999999999999999998899999999 7666554
No 21
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=99.95 E-value=7.9e-29 Score=197.57 Aligned_cols=81 Identities=40% Similarity=0.815 Sum_probs=74.9
Q ss_pred eeccCCcccCCHHhHHHHHHhcCCCceEeecCcc--cHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccc
Q 015310 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAV 320 (409)
Q Consensus 243 viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAv 320 (409)
|+|+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++..+|.|+|||||||+++++++|++|+.|+.+|||
T Consensus 1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv 80 (83)
T PF08501_consen 1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV 80 (83)
T ss_dssp EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence 6899999999999999999999999999999985 99999999988999999999999999999999999999999999
Q ss_pred eEE
Q 015310 321 NTI 323 (409)
Q Consensus 321 Nti 323 (409)
|||
T Consensus 81 Ntv 83 (83)
T PF08501_consen 81 NTV 83 (83)
T ss_dssp SEE
T ss_pred ccC
Confidence 997
No 22
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.80 E-value=2.3e-19 Score=174.14 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=119.7
Q ss_pred eeeccCCcccCCHHhHHHHHHhcCCCceEeec--Cc--ccHHHHHHHhcCC-CCCeEEEcccchHHHHh--hhhhhcHHH
Q 015310 242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPM--FV--DDLKKFFSTYSSP-DFAGFSVGFPYKEAVMK--FCDEVHPLA 314 (409)
Q Consensus 242 ~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~--~~--~~l~~~~~~~~~~-~~~G~nVT~P~K~~i~~--~~d~~~~~A 314 (409)
-++|+.=+.-.--.+|+.+|+++|+++.|.++ ++ +++.+.++.++.. ++.|++||+|||+.+.+ ++|++ +.+
T Consensus 39 i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~a 117 (283)
T PRK14192 39 ILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLA 117 (283)
T ss_pred EEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHH
Confidence 34554322222334899999999999999999 55 4788888888655 89999999999999999 99999 999
Q ss_pred HHhccceEEEEeCCCCe------EEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHH
Q 015310 315 QAIAAVNTIIRRPSDGK------LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGA 387 (409)
Q Consensus 315 ~~igAvNti~~~~~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL 387 (409)
+.++++|++ + +|+ ++|+||| .||++.|+.. +.+++||+|+|+|+|| +||++++.|
T Consensus 118 KDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-------------~i~l~Gk~vvViG~gg~vGkpia~~L 179 (283)
T PRK14192 118 KDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-------------NIELAGKHAVVVGRSAILGKPMAMML 179 (283)
T ss_pred HhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHHH
Confidence 999999998 3 456 8999999 9999998753 2578999999999999 999999999
Q ss_pred HhCCCeEEEEeCCh
Q 015310 388 KSRGARVVIFDIDF 401 (409)
Q Consensus 388 ~~~G~~i~v~nR~~ 401 (409)
.+.|+.|+|++|..
T Consensus 180 ~~~gatVtv~~~~t 193 (283)
T PRK14192 180 LNANATVTICHSRT 193 (283)
T ss_pred HhCCCEEEEEeCCc
Confidence 99999999999843
No 23
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.88 E-value=3.3e-09 Score=92.19 Aligned_cols=44 Identities=34% Similarity=0.477 Sum_probs=42.1
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la 408 (409)
++++++++|+||||+||+++++|.++|+ +|+|+|||.+|+++|+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~ 53 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALA 53 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 5789999999999999999999999999 7999999999999986
No 24
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.68 E-value=2.6e-08 Score=99.28 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=64.7
Q ss_pred HHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh-CCC-
Q 015310 315 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA- 392 (409)
Q Consensus 315 ~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~-~G~- 392 (409)
..+|++||++.. ++.|.|+|||+.|++.+.. +. ....++++|+|+|+.|++.+.++.. .++
T Consensus 96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-------------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~ 158 (330)
T PRK08291 96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDASRAAVIGAGEQARLQLEALTLVRPIR 158 (330)
T ss_pred CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence 356999999755 7889999999999999864 31 1234789999999999999999986 567
Q ss_pred eEEEEeCChHHHHhhh
Q 015310 393 RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 393 ~i~v~nR~~~ka~~la 408 (409)
+|+|+||+.+++++++
T Consensus 159 ~V~v~~R~~~~a~~l~ 174 (330)
T PRK08291 159 EVRVWARDAAKAEAYA 174 (330)
T ss_pred EEEEEcCCHHHHHHHH
Confidence 8999999999999875
No 25
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.57 E-value=8.8e-08 Score=95.37 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=64.1
Q ss_pred HhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHH-hCCC-e
Q 015310 316 AIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGA-R 393 (409)
Q Consensus 316 ~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~-~~G~-~ 393 (409)
..|++|+++.. ++.+.|+|||+.|++.+.. +. ....++++|+|+|+.||+.+.+|. ..++ +
T Consensus 94 ~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-------------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~ 156 (326)
T TIGR02992 94 RTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDSSVVAIFGAGMQARLQLEALTLVRDIRS 156 (326)
T ss_pred CCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCcEEEEECCCHHHHHHHHHHHHhCCccE
Confidence 45999999765 7889999999999999863 21 123578999999999999999997 4677 8
Q ss_pred EEEEeCChHHHHhhh
Q 015310 394 VVIFDIDFEQSLLLL 408 (409)
Q Consensus 394 i~v~nR~~~ka~~la 408 (409)
|+|+||+.+|+++++
T Consensus 157 v~V~~R~~~~a~~~a 171 (326)
T TIGR02992 157 ARIWARDSAKAEALA 171 (326)
T ss_pred EEEECCCHHHHHHHH
Confidence 999999999999875
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.42 E-value=8.3e-07 Score=78.11 Aligned_cols=59 Identities=37% Similarity=0.590 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la 408 (409)
|||+||.+++++. +.+.++++++|+|+|++|++++.+|.+.|. +|++++|+.+++++++
T Consensus 1 td~~g~~~a~~~~-------------~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~ 60 (155)
T cd01065 1 TDGLGFVRALEEA-------------GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALA 60 (155)
T ss_pred CCHHHHHHHHHhh-------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 8999999998753 134678899999999999999999999975 8999999999887754
No 27
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.22 E-value=5.1e-07 Score=93.03 Aligned_cols=100 Identities=24% Similarity=0.279 Sum_probs=76.5
Q ss_pred chHHHHhhhhhhcHHHHHhccceEEEEe---C--CCCeEEEEcCcHHHH-----HHHHHHHHHhcCcCCCCCCCCCCCCC
Q 015310 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRR---P--SDGKLIGYNTDCEAS-----ITAIEDAIKERGYKNGTASFGSPLAG 368 (409)
Q Consensus 299 ~K~~i~~~~d~~~~~A~~igAvNti~~~---~--~~g~l~G~NTD~~G~-----~~~l~~~l~~~~~~~~~~~~~~~~~~ 368 (409)
=+.+|+++++.....|+..|++|+++.. . .-++..+++|+..+. ..+++.... . ..++.+
T Consensus 113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~--~--------~~~~~~ 182 (423)
T PRK00045 113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQ--I--------FGDLSG 182 (423)
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHH--h--------hCCccC
Confidence 3678999999999999999999998731 0 145677778886442 123332211 0 024678
Q ss_pred CEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la 408 (409)
++++|+|+|++|+.++..|...|+ +|+|+||+.+++++++
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la 223 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELA 223 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence 999999999999999999999998 8999999999998775
No 28
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.20 E-value=1.7e-06 Score=88.68 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=68.6
Q ss_pred hHHHHhhhhhhcHHHHHhccceEEEEe---C--------CCCeEEEEcCcHHHHHH--HHHHHHHhcCcCCCCCCCCCCC
Q 015310 300 KEAVMKFCDEVHPLAQAIAAVNTIIRR---P--------SDGKLIGYNTDCEASIT--AIEDAIKERGYKNGTASFGSPL 366 (409)
Q Consensus 300 K~~i~~~~d~~~~~A~~igAvNti~~~---~--------~~g~l~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~~~~ 366 (409)
..+|+.++.+.-..|+..|++..++.+ . ...+-+|.+.=..+... ..++.+ .++
T Consensus 113 E~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~~-------------~~l 179 (414)
T PRK13940 113 EPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQL-------------DNI 179 (414)
T ss_pred cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHh-------------cCc
Confidence 457888888888888888888776533 0 01112333333334322 222221 347
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la 408 (409)
.+++++|+|+||+|++++.+|...|+ +|+|+||+.+||+.|+
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La 222 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKIT 222 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 78999999999999999999999998 8999999999999886
No 29
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.03 E-value=8.2e-06 Score=82.95 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=91.9
Q ss_pred HhHHHHHHhcCCC------ceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEe--
Q 015310 255 ILHNPTFRHVNYN------GIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRR-- 326 (409)
Q Consensus 255 ~ihn~~f~~~gl~------~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~-- 326 (409)
.+-+-.++..+++ +.|...+.+-+..++... .|+..+.+. -.+|+.++...-..|+.-|.+.+++.+
T Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~v~~~~~Av~HLfrVA--sGLDSmVlG---E~QILGQVK~Ay~~a~~~g~~g~~L~~lF 138 (414)
T COG0373 64 ELIRFLAELHGLSIEDLGKYLYVLRGEEAVRHLFRVA--SGLDSLVLG---ETQILGQVKDAYAKAQENGTLGKVLNRLF 138 (414)
T ss_pred chhHHHHHhcCCChhhhccCeEEEcCHHHHHHHHHHh--ccchhhhcC---cHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4334444455543 234444434455554432 344444444 367888998888888888888876532
Q ss_pred -C--------CCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEE
Q 015310 327 -P--------SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI 396 (409)
Q Consensus 327 -~--------~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v 396 (409)
. .+-+-+|.|--.++.... +..... ..+++++++||||||-++.-++..|...|+ +|+|
T Consensus 139 qkAi~~gKrvRseT~I~~~~VSi~saAv-~lA~~~----------~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I 207 (414)
T COG0373 139 QKAISVGKRVRSETGIGKGAVSISSAAV-ELAKRI----------FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI 207 (414)
T ss_pred HHHHHHHHHhhcccCCCCCccchHHHHH-HHHHHH----------hcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE
Confidence 0 012346677666666432 211110 134789999999999999999999999998 9999
Q ss_pred EeCChHHHHhhhC
Q 015310 397 FDIDFEQSLLLLM 409 (409)
Q Consensus 397 ~nR~~~ka~~la~ 409 (409)
+|||.+||++||.
T Consensus 208 aNRT~erA~~La~ 220 (414)
T COG0373 208 ANRTLERAEELAK 220 (414)
T ss_pred EcCCHHHHHHHHH
Confidence 9999999999873
No 30
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.88 E-value=2.5e-05 Score=73.79 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC---eEEEEeCC----hHHH
Q 015310 340 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FEQS 404 (409)
Q Consensus 340 ~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~---~i~v~nR~----~~ka 404 (409)
.||+.+++.. +.++++++++|+||||+|+++++.|.+.|+ +|+|+||+ .+++
T Consensus 10 AG~~~al~~~-------------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 10 AGLLNALKLV-------------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGRE 68 (226)
T ss_pred HHHHHHHHHh-------------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccc
Confidence 5777777542 246788999999999999999999999997 59999999 5654
No 31
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.71 E-value=0.00013 Score=67.03 Aligned_cols=66 Identities=32% Similarity=0.430 Sum_probs=52.3
Q ss_pred EEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 334 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
|-||-....+..+++.+.+. +.++++++++|+|+ |++|++++..|.+.|++|++++|+.+++++++
T Consensus 3 G~~~ta~aav~~~~~~l~~~---------~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 3 GSNTTAAAAVAAAGKALELM---------GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CcHHHHHHHHHHHHHHHHHh---------CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 34555666667766666422 24678899999996 99999999999999999999999999988764
No 32
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.35 E-value=0.00095 Score=53.14 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeC
Q 015310 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 399 (409)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR 399 (409)
+.|.+..|+...... +.++++++++|+|+|++|++++..|.+.|. +|+++||
T Consensus 3 ~~~~~~~l~~~~~~~---------~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 3 AAGAVALLKAAGKVT---------NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred hHHHHHHHHHHHHHh---------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 567777777654311 245788999999999999999999999965 9999998
No 33
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.29 E-value=0.0011 Score=61.42 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
++|...+++..+...- .+.+++|++++|+|.|.+|++++..|.+.|++|++++++.++.++++
T Consensus 6 g~Gv~~~~~~~~~~~~-------~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 6 AYGVFLGMKAAAEHLL-------GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred HHHHHHHHHHHHHHhc-------CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 4677777776654210 02568899999999999999999999999999999999998877653
No 34
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.27 E-value=0.0019 Score=63.33 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=39.0
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
..++|++++|+|+|++|++++..|..+|++|+++||+.++...
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLAR 189 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4678999999999999999999999999999999999877543
No 35
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.26 E-value=0.0023 Score=62.50 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=78.7
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++.....++. +++...++.+ .++++.|+-|-.|.-.. +|+ . +.+.+++--.=- ||
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~----i~~---~-~i~~~I~p~KDV--DGl~ 123 (286)
T PRK14175 54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQ----VSE---Q-KILEAINPEKDV--DGFH 123 (286)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCcccCc--ccCC
Confidence 446789999988777764 3566667767 46789999999997422 221 1 122222221100 11
Q ss_pred -----eEE-EE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310 331 -----KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 -----~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR 399 (409)
++. |. -.--.|++..|+.. +.+++||+++|+|.|+ +|+.++..|...|+.|+++++
T Consensus 124 ~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s 190 (286)
T PRK14175 124 PINIGKLYIDEQTFVPCTPLGIMEILKHA-------------DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHS 190 (286)
T ss_pred ccchHhHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeC
Confidence 111 11 01124556655432 2578999999999999 999999999999999999887
Q ss_pred ChH
Q 015310 400 DFE 402 (409)
Q Consensus 400 ~~~ 402 (409)
...
T Consensus 191 ~t~ 193 (286)
T PRK14175 191 RSK 193 (286)
T ss_pred Cch
Confidence 533
No 36
>PLN00203 glutamyl-tRNA reductase
Probab=97.18 E-value=0.00063 Score=71.80 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=67.9
Q ss_pred hHHHHhhhhhhcHHHHHhccceEEEEe---C--C------CCeEEEEcCcHHHHHH--HHHHHHHhcCcCCCCCCCCCCC
Q 015310 300 KEAVMKFCDEVHPLAQAIAAVNTIIRR---P--S------DGKLIGYNTDCEASIT--AIEDAIKERGYKNGTASFGSPL 366 (409)
Q Consensus 300 K~~i~~~~d~~~~~A~~igAvNti~~~---~--~------~g~l~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~~~~ 366 (409)
-.+|+.++.+.-..|+..|+++.++.+ . . .-+-+|.+-=..+... ..++.+. ..++
T Consensus 196 E~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~-----------~~~l 264 (519)
T PLN00203 196 EGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP-----------ESSH 264 (519)
T ss_pred ChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC-----------CCCC
Confidence 357888888888888888888766532 0 0 1112333333333322 1122111 0237
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la 408 (409)
.+++++|+|+|++|++++..|...|+ +|+|+||+.++++.++
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La 307 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR 307 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence 78999999999999999999999998 8999999999998875
No 37
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.15 E-value=0.0012 Score=59.45 Aligned_cols=43 Identities=26% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEechhH-HHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 364 SPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGa-arai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.+++|++++|+|+|++ ++.++..|.+.|++|+++||+.+...+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~ 83 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKE 83 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHH
Confidence 4688999999999996 888999999999999999999765543
No 38
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.15 E-value=0.00051 Score=68.45 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=63.1
Q ss_pred hHHHHhhhhhhcHHHHHhccceEEEEe---C--------CCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCC
Q 015310 300 KEAVMKFCDEVHPLAQAIAAVNTIIRR---P--------SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAG 368 (409)
Q Consensus 300 K~~i~~~~d~~~~~A~~igAvNti~~~---~--------~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~ 368 (409)
-.+|+.++.+.-..|+..|++..++.+ . ....-+|.+-=..+.. +.+. ... ..++.+
T Consensus 107 E~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~-av~~-~~~----------~~~l~~ 174 (338)
T PRK00676 107 ETEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESV-VQQE-LRR----------RQKSKK 174 (338)
T ss_pred cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHH-HHH----------hCCccC
Confidence 457888888888888888877664422 0 0112344444444443 2221 110 135789
Q ss_pred CEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHH
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQ 403 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~k 403 (409)
+++||+|+|-+|+.++..|.+.|+ +|+|+|||.++
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 999999999999999999999998 89999999643
No 39
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.0038 Score=61.33 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=81.3
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++..-..++. +++.+.++.+ .++.+.|+-|-+|.-. ++|+ . +.+.+++--.=- ||
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~ 124 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA----HIDE---A-RVLQAINPLKDV--DGFH 124 (301)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCH---H-HHHhccCchhcc--CccC
Confidence 446889999987777753 3577777777 5678999999999742 2222 1 122222221100 11
Q ss_pred -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeC
Q 015310 331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR 399 (409)
++ .|.+ .--.|++.-|+.. +.+++||+++|||.| =+|+.++.-|.+.|+.|++++|
T Consensus 125 ~~N~g~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~ 191 (301)
T PRK14194 125 SENVGGLSQGRDVLTPCTPSGCLRLLEDT-------------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHS 191 (301)
T ss_pred hhhhhHHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECC
Confidence 11 1111 1135666665542 367899999999997 5999999999999999999987
Q ss_pred ChHHHHh
Q 015310 400 DFEQSLL 406 (409)
Q Consensus 400 ~~~ka~~ 406 (409)
+....++
T Consensus 192 ~t~~l~e 198 (301)
T PRK14194 192 RSTDAKA 198 (301)
T ss_pred CCCCHHH
Confidence 6443333
No 40
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.94 E-value=0.0015 Score=64.78 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=65.8
Q ss_pred chHHHHhhhhhhcHHHHHhccceEEEEe--------C---CCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCC
Q 015310 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRR--------P---SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLA 367 (409)
Q Consensus 299 ~K~~i~~~~d~~~~~A~~igAvNti~~~--------~---~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~ 367 (409)
=..+|+.++.+.-..|+..|.++.++.+ + ....-++.+.=..+.. +++..... ...+.
T Consensus 109 GE~qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~-Av~~a~~~----------~~~l~ 177 (311)
T cd05213 109 GETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSA-AVELAEKI----------FGNLK 177 (311)
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHHHHHH----------hCCcc
Confidence 3567888888888888888887765532 0 0011122222223332 23321110 02357
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la 408 (409)
+++++|+|+|.+|+.++..|...|+ +|+|+||+.+++++++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la 219 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELA 219 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 8999999999999999999999887 8999999999998775
No 41
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.85 E-value=0.0019 Score=66.61 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=40.3
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la 408 (409)
.+.+++++|+|+|.+|+.++..|...|+ +|+|+||+.+++++++
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la 221 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLA 221 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 4678999999999999999999999997 9999999999988765
No 42
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.83 E-value=0.029 Score=51.51 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=84.0
Q ss_pred eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310 11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE 89 (409)
Q Consensus 11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ 89 (409)
|.||+.|-..+.++..+-++.+... +|++|+-..++.... .+.++.+++. .+.|++...-.... + . .
T Consensus 1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~~~-~-------~--~ 68 (202)
T cd04726 1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTADA-G-------A--L 68 (202)
T ss_pred CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEeccc-c-------H--H
Confidence 5799999999999999988887665 999999766654332 2467777764 58899886553311 1 1 2
Q ss_pred HHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 90 ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
.++.+.+.|+++|=+-.....+...+++ ..++.+.++++..+.. .|| ++.. + +...|+|++++
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~--~e~~---~-~~~~~~d~v~~ 132 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-EDP--EKRA---K-LLKLGVDIVIL 132 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CCH--HHHH---H-HHHCCCCEEEE
Confidence 3467788999988775544332233343 3445678888754432 133 2332 2 55668899888
No 43
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.71 E-value=0.0033 Score=61.86 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=37.1
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka 404 (409)
..+.+++++|+|+|++|++++..|..+|++|++++|+.++.
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~ 188 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL 188 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 35678999999999999999999999999999999997654
No 44
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.61 E-value=0.092 Score=48.93 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=77.5
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (409)
+++.-+...+.+++...++.+.+.|+.++|+|.+-- +..+.++.+.+..+.++++-.=| . -..++ .
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGT-----V---~~~~~---~ 76 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGT-----V---LSPEQ---V 76 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEe-----c---CCHHH---H
Confidence 455668889999999999999999999999997533 22346777766555555533211 1 11222 3
Q ss_pred HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
+.+++.|++++=.=-... +..+ ..+..+..++.+.|+ | +| +.++.+.|+|++|+
T Consensus 77 ~~a~~aGA~fivsp~~~~-~v~~---~~~~~~~~~~~G~~t----~--~E----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 77 DRLADAGGRLIVTPNTDP-EVIR---RAVALGMVVMPGVAT----P--TE----AFAALRAGAQALKL 130 (206)
T ss_pred HHHHHcCCCEEECCCCCH-HHHH---HHHHCCCcEEcccCC----H--HH----HHHHHHcCCCEEEE
Confidence 567888998875422211 1211 233567788888774 3 33 35566789999996
No 45
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.58 E-value=0.3 Score=47.54 Aligned_cols=208 Identities=14% Similarity=0.069 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCC-------CCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCI-------NNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+.++.++-++...+.|.|.+|.=.-.- ...++.+.+..+++. .+.++..-.|..+.=|..+.+.+-..+.++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 345555556666678999999875321 122334555555543 367888888876554544445555667888
Q ss_pred HHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015310 93 LAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DIT 167 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~ 167 (409)
.+.+.|+++|-|-....+ +...+.+ .++..+.++..+... +....+.+.+.+.++++.+.|+|.+-++=+.- ++.
T Consensus 99 ~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~ 178 (275)
T cd07937 99 KAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPY 178 (275)
T ss_pred HHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence 899999999888654432 2222222 455667777765432 22233467899999999999999998885544 477
Q ss_pred HHHHHHHHhccC-CCCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 168 EIARIFQLLSHC-QVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 168 D~~~ll~~~~~~-~~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
++.++++.+.+. +.|+-. ++|+. ..=+..-..|..+.-+++.. +--.|+.+++++...++.
T Consensus 179 ~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~---aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~ 246 (275)
T cd07937 179 AAYELVKALKKEVGLPIHLHTHDTSGLAV---ATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRG 246 (275)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCChHH---HHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHc
Confidence 888888776543 434321 12222 22222222344443344332 234799999988876653
No 46
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.54 E-value=0.0041 Score=61.70 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=37.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la 408 (409)
..++++|+|+|++|++.+.++.. .+. +|+|+||+++++++++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a 167 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA 167 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 46899999999999999988776 566 8999999999999875
No 47
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.47 E-value=0.06 Score=50.86 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc--CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK--KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 22 ~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
.+++.+-++.+.+.|+|.+=+..-+ +....+. .+.|++..++...-=|....+.+....-.+.+++.|+
T Consensus 20 ~~d~~~~~~~~~~~g~~av~v~~~~---------~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga 90 (235)
T cd00958 20 LEDPEETVKLAAEGGADAVALTKGI---------ARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGA 90 (235)
T ss_pred ccCHHHHHHHHHhcCCCEEEeChHH---------HHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCC
Confidence 3444445556666789998544221 2221111 2557787776321111112233555556789999999
Q ss_pred cEEEEeccCccc-------hHHHHH-hccCCCcEEEEeccCCCC----CCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015310 100 DYVDFELKVASN-------ILGKQY-SSHQSGTRFIVSCNLDCE----TPSEEDLGYLVSRMQATGADIIKLVFSVNDIT 167 (409)
Q Consensus 100 dyvDiEl~~~~~-------~~~~l~-~~~~~~~kiI~S~H~f~~----tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~ 167 (409)
+.||+.++.... .+.++. ..++.+.++|+--|.... .-+.+++....+.+.+.|||++|+-. +.
T Consensus 91 ~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-~~--- 166 (235)
T cd00958 91 DAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-TG--- 166 (235)
T ss_pred CEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-CC---
Confidence 999998876431 233444 235678999985543100 01234555557778899999999942 22
Q ss_pred HHHHHHHHhccCCCCEEEE
Q 015310 168 EIARIFQLLSHCQVPIIAY 186 (409)
Q Consensus 168 D~~~ll~~~~~~~~p~i~~ 186 (409)
|...+-++......|+++.
T Consensus 167 ~~~~~~~i~~~~~~pvv~~ 185 (235)
T cd00958 167 DAESFKEVVEGCPVPVVIA 185 (235)
T ss_pred CHHHHHHHHhcCCCCEEEe
Confidence 3333444444456776443
No 48
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.45 E-value=0.012 Score=52.68 Aligned_cols=43 Identities=35% Similarity=0.496 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
..+.||+++|+|-|-.||.+|..|..+|++|+|+.+++-++-+
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alq 61 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQ 61 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHH
Confidence 5678999999999999999999999999999999999988765
No 49
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.41 E-value=0.011 Score=58.40 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=37.8
Q ss_pred CCCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la 408 (409)
..++++|+|+|+.|++.+.++.. .+. +|+|+||+.+++++++
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a 167 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFC 167 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 46799999999999999999976 577 8999999999999875
No 50
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.35 E-value=0.0064 Score=61.72 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=37.9
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
+.+++++|+|+|++|+.++..|..+|++|++++|+.++++.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 456789999999999999999999999999999999887765
No 51
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.30 E-value=0.03 Score=55.04 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=77.6
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
....+++|++..-..++. +++...++.+ .++++.|+-|-.|+-. ++|+ . +.+.+++--. | .
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~----~~~~---~-~i~~~I~p~K----D--V 119 (296)
T PRK14188 54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPK----HLDS---E-AVIQAIDPEK----D--V 119 (296)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC----CCCH---H-HHHhccCccc----c--c
Confidence 346789999976555542 3677777777 4678999999999742 2222 1 1122222111 1 1
Q ss_pred EEEcCc----------------HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEe-chhHHHHHHHHHHhCCCeEE
Q 015310 333 IGYNTD----------------CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGARVV 395 (409)
Q Consensus 333 ~G~NTD----------------~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlG-aGGaarai~~aL~~~G~~i~ 395 (409)
-|.+.. -.|++.-|+.. +.+++||+++|+| +|-+|+.++.-|.+.|+.|+
T Consensus 120 DGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt 186 (296)
T PRK14188 120 DGLHVVNAGRLATGETALVPCTPLGCMMLLRRV-------------HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT 186 (296)
T ss_pred ccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE
Confidence 112211 35566655432 2578999999999 78899999999999999999
Q ss_pred EE-eCChH
Q 015310 396 IF-DIDFE 402 (409)
Q Consensus 396 v~-nR~~~ 402 (409)
++ +||.+
T Consensus 187 v~~~rT~~ 194 (296)
T PRK14188 187 IAHSRTRD 194 (296)
T ss_pred EECCCCCC
Confidence 99 58854
No 52
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=96.26 E-value=0.52 Score=50.72 Aligned_cols=208 Identities=13% Similarity=0.094 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+.++.+.-++...+.|.+.+|.- .|. +-..++.+.+..+++. .+.++..-+|..+-=|....+++-..+.++
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK 98 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence 45666666666677899999995 552 2222445667777653 468888888977777776667777777889
Q ss_pred HHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEEEec-cCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310 93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSC-NLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--D 165 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~-H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--~ 165 (409)
.+++.|+|.+-|=....+ +....+..+++.+..+.++. +.| +| +.+.+.+..+++.+.|||.+-|+=|.- +
T Consensus 99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~ 176 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT--SPVHTLETYLDLAEELLEMGVDSICIKDMAGILT 176 (582)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence 999999998877655432 22222223455666666542 223 55 567899999999999999988876654 5
Q ss_pred HhHHHHHHHHhccC-CCCEEEE---EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 166 ITEIARIFQLLSHC-QVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 166 ~~D~~~ll~~~~~~-~~p~i~~---~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
+.++.++.+.+.+. +.|+ .+ +..-++..+=+..-.-|....-+++.. +-..||++++++...++.
T Consensus 177 P~~v~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~ 246 (582)
T TIGR01108 177 PKAAYELVSALKKRFGLPV-HLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRG 246 (582)
T ss_pred HHHHHHHHHHHHHhCCCce-EEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHh
Confidence 78888887776533 4453 22 333344445554444555444444433 346899999988877753
No 53
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.25 E-value=0.041 Score=53.71 Aligned_cols=120 Identities=21% Similarity=0.285 Sum_probs=77.3
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
...++++|++.....++. +++.+.++.+ .++++.|+-|-.|.-. ++|+ . +.+.+++--. + =||
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~----~i~~---~-~i~~~I~p~K-D-VDGl~ 123 (285)
T PRK14189 54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPK----HIDS---H-KVIEAIAPEK-D-VDGFH 123 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCH---H-HHHhhcCccc-C-cccCC
Confidence 456899999988777763 4677777777 4578999999999742 2221 1 1111222111 0 011
Q ss_pred -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhH-HHHHHHHHHhCCCeEEEEeC
Q 015310 331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGa-arai~~aL~~~G~~i~v~nR 399 (409)
++ .|.+ .--.|++.-|+.. +.+++||+++|+|.|+. ||.++.-|.+.|+.|+++..
T Consensus 124 ~~n~g~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs 190 (285)
T PRK14189 124 VANAGALMTGQPLFRPCTPYGVMKMLESI-------------GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS 190 (285)
T ss_pred hhhhhHhhCCCCCCcCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC
Confidence 11 1111 1125666665542 36789999999999997 99999999999999988865
Q ss_pred C
Q 015310 400 D 400 (409)
Q Consensus 400 ~ 400 (409)
.
T Consensus 191 ~ 191 (285)
T PRK14189 191 K 191 (285)
T ss_pred C
Confidence 3
No 54
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.16 E-value=0.077 Score=48.95 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=87.0
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l 90 (409)
++||.|-..+.++.++-++.+ ..|.|++|+-.-++.... .+.++.+++.. +.++++....- + ...+ .
T Consensus 1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d-------~~~~--~ 68 (206)
T TIGR03128 1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-D-------AGEY--E 68 (206)
T ss_pred CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-c-------chHH--H
Confidence 478999999999999988876 788999999644544332 24677777653 56777766543 1 1111 3
Q ss_pred HHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 91 l~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
.+.+.+.|+|+|=+-...+.....+++ ..++.+.++++..++.. | ..+.++.+.+.|+|++|+
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-t-----~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVK-D-----KVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCC-C-----hHHHHHHHHHcCCCEEEE
Confidence 567788999998776665433333444 34567899998766531 2 334455566779999988
No 55
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.035 Score=54.21 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=78.4
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
.+.++++|++.....++. +++.+.++.+ .++++.|+-|-+|... ++|+ . +.+.+++--.=- || +
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~----~~~~---~-~i~~~I~p~KDV--DG-l 123 (285)
T PRK10792 55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPA----HIDN---V-KVLERIHPDKDV--DG-F 123 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccccc--Cc-c
Confidence 456889999988777753 3677777777 4678999999999752 2222 1 122222221100 11 1
Q ss_pred EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310 333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n 398 (409)
+-+| .--.|++..|+.. +.+++||+++|+|-|. .|+.++.-|.+.|+.|+++.
T Consensus 124 ~~~n~g~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~h 190 (285)
T PRK10792 124 HPYNVGRLAQRIPLLRPCTPRGIMTLLERY-------------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCH 190 (285)
T ss_pred ChhhHhHHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEE
Confidence 1111 1125666665542 3678999999999999 99999999999999999988
Q ss_pred CC
Q 015310 399 ID 400 (409)
Q Consensus 399 R~ 400 (409)
+.
T Consensus 191 s~ 192 (285)
T PRK10792 191 RF 192 (285)
T ss_pred CC
Confidence 74
No 56
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.14 E-value=0.012 Score=47.20 Aligned_cols=39 Identities=33% Similarity=0.398 Sum_probs=34.9
Q ss_pred EEEEEechhHHHHHHHHHHhCC---CeEEEE-eCChHHHHhhh
Q 015310 370 MFVLAGAGGAGRALAFGAKSRG---ARVVIF-DIDFEQSLLLL 408 (409)
Q Consensus 370 ~vlvlGaGGaarai~~aL~~~G---~~i~v~-nR~~~ka~~la 408 (409)
++.|||+|.+|.+++..|.+.| .+|+++ +|+++++++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHH
Confidence 4788999999999999999999 589855 99999998875
No 57
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.11 E-value=0.035 Score=54.18 Aligned_cols=118 Identities=20% Similarity=0.343 Sum_probs=77.7
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
...++++|++.....++. +++...++.+ .++++.|+-|-+|....+ |+ . +.+.+++--. + =|| +
T Consensus 60 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i----~~---~-~i~~~I~p~K-D-VDG-l 128 (287)
T PRK14176 60 HKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHL----DP---Q-EAMEAIDPAK-D-ADG-F 128 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCC----CH---H-HHHhccCccc-c-ccc-c
Confidence 456899999988777764 3577777777 567899999999975322 21 1 1111111110 0 011 2
Q ss_pred EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310 333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n 398 (409)
+-+| .--.|++..|+.. +.+++||+++|+|.|. .|+.++.-|.+.|+.|+++.
T Consensus 129 ~~~N~g~l~~g~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~h 195 (287)
T PRK14176 129 HPYNMGKLMIGDEGLVPCTPHGVIRALEEY-------------GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCH 195 (287)
T ss_pred ChhhhhhHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEe
Confidence 1111 1125666665542 3678999999999999 99999999999999999988
Q ss_pred C
Q 015310 399 I 399 (409)
Q Consensus 399 R 399 (409)
.
T Consensus 196 s 196 (287)
T PRK14176 196 V 196 (287)
T ss_pred c
Confidence 4
No 58
>PRK08328 hypothetical protein; Provisional
Probab=96.08 E-value=0.0068 Score=57.48 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=33.5
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHH
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQ 403 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~k 403 (409)
+++++|+|+|+||.|..++..|+..|+ +++|++.+.-.
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 456789999999999999999999999 99999876433
No 59
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.08 E-value=0.0081 Score=55.72 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=32.8
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++++|+|+|+||.|..++..|...|+ ++++++++
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 467899999999999999999999999 99999987
No 60
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.07 E-value=0.015 Score=60.02 Aligned_cols=43 Identities=33% Similarity=0.502 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
..+.|++++|+|.|..|+.++..|..+|++|+++++++.++..
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~ 250 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQ 250 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHH
Confidence 3468999999999999999999999999999999999888654
No 61
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.02 E-value=0.011 Score=59.02 Aligned_cols=42 Identities=21% Similarity=0.409 Sum_probs=36.8
Q ss_pred CCCEEEEEechhHHHHHHHHHH-hCCC-eEEEEeCChHHHHhhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~-~~G~-~i~v~nR~~~ka~~la 408 (409)
..++++|+|+|+.|++.+.++. ..++ +|+|+||+++++++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~ 169 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA 169 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence 3578999999999999998876 4578 8999999999998875
No 62
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.99 E-value=0.0073 Score=61.43 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=32.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
++++|+|+|+||.|..++..|+..|+ +|++++++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999999 99999998
No 63
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.98 E-value=0.0087 Score=49.32 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=32.5
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
+++|+++||+|+|.+|..-+..|.+.|++|+|++.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 5789999999999999999999999999999999985
No 64
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.93 E-value=0.21 Score=48.85 Aligned_cols=84 Identities=20% Similarity=0.364 Sum_probs=59.8
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecC----------CCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCC
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC----------INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLY 80 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~----------l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~ 80 (409)
.++++|.+.+.+++...++.+.+.|+|.||+=+-+ ..+.+. .+.++.+++..++|+.+-++..
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------ 164 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------ 164 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence 36799999999999999999888899999996432 111110 1234444455589999888642
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Q 015310 81 EGDEHKRLEALHLAEDLGADYVDF 104 (409)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~dyvDi 104 (409)
.++-.++.+.+.+.|+|+|++
T Consensus 165 ---~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 165 ---VTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ---chhHHHHHHHHHHcCCCEEEE
Confidence 235667778888899999886
No 65
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.92 E-value=0.49 Score=45.25 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHH---HHHH
Q 015310 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE---ALHL 93 (409)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~ 93 (409)
..+.+++. .+.+.|||-|||.-++-. ...|. ..++.+++..++|+.+-+|++ ||-|-.++++... -++.
T Consensus 8 v~s~~~a~----~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~gdF~Ys~~E~~~M~~di~~ 81 (248)
T PRK11572 8 CYSMECAL----TAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPR--GGDFCYSDGEFAAMLEDIAT 81 (248)
T ss_pred ECCHHHHH----HHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHH
Confidence 34555544 455789999999998754 33443 345566666799999999985 5666667655433 3456
Q ss_pred HHHcCCcEEEE-----eccCccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015310 94 AEDLGADYVDF-----ELKVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT 167 (409)
Q Consensus 94 ~~~~g~dyvDi-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~ 167 (409)
+.++|+|.|=+ +-..+.+..++|+... ++.++ .||- |+.+++. .+-++.+.++|.|=+==.--+.+..
T Consensus 82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a-~~~~v--TFHRAfD~~~d~---~~al~~l~~lG~~rILTSGg~~~a~ 155 (248)
T PRK11572 82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA-GPLAV--TFHRAFDMCANP---LNALKQLADLGVARILTSGQQQDAE 155 (248)
T ss_pred HHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh-cCCce--EEechhhccCCH---HHHHHHHHHcCCCEEECCCCCCCHH
Confidence 66788886655 3344445667777432 44444 6776 9999854 4567777778855443333444566
Q ss_pred HHHHHHHHh
Q 015310 168 EIARIFQLL 176 (409)
Q Consensus 168 D~~~ll~~~ 176 (409)
|.+..++-+
T Consensus 156 ~g~~~L~~l 164 (248)
T PRK11572 156 QGLSLIMEL 164 (248)
T ss_pred HHHHHHHHH
Confidence 666555544
No 66
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.86 E-value=0.11 Score=50.88 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=76.5
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++.....++. +++.+.++.+ .++.+.|+-|-+|... ++|+ . +.+.+++--.=- ||
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~----~i~~---~-~i~~~I~p~KDV--DGl~ 122 (285)
T PRK14191 53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPR----HIDT---K-MVLEAIDPNKDV--DGFH 122 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhcCCccccc--cccC
Confidence 456889999988777764 3677777777 4678999999999752 2222 1 111222211100 11
Q ss_pred -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeC
Q 015310 331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR 399 (409)
++ .|.+ .--.|++.-|+.. +.+++||+|+|+|.| -+|+.++.-|.+.|+.|+++..
T Consensus 123 ~~n~g~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs 189 (285)
T PRK14191 123 PLNIGKLCSQLDGFVPATPMGVMRLLKHY-------------HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI 189 (285)
T ss_pred hhhHHHHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC
Confidence 11 1111 1224555555432 367899999999998 6999999999999999888764
No 67
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.83 E-value=0.34 Score=44.62 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHH---hcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
+++..+++.+.+.|+|+|++|.--+......+.+..+. +..+.|+++. +.++.+.+.|+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga 82 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA 82 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence 45667778888889999999975333211112222222 2346787763 12456778899
Q ss_pred cEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310 100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (409)
Q Consensus 100 dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia 160 (409)
++|=+...... ...+...+..+.++-+|.|+ .+++ .+..+.|+|++++-
T Consensus 83 d~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t------~~e~----~~a~~~gaD~v~~~ 131 (212)
T PRK00043 83 DGVHLGQDDLP--VADARALLGPDAIIGLSTHT------LEEA----AAALAAGADYVGVG 131 (212)
T ss_pred CEEecCcccCC--HHHHHHHcCCCCEEEEeCCC------HHHH----HHHhHcCCCEEEEC
Confidence 99877554322 12222233466778888873 2333 44446799999974
No 68
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.78 E-value=0.42 Score=43.73 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=69.7
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (409)
.++.-+...+.+++...++.+.+.|++++|+|..-- ...+.++.+.+..+. +.+.. |.. .+. ++ +
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~~~~-~~iGa------g~v-~~~-~~---~ 69 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTP---GALEAIRALRKEFPE-ALIGA------GTV-LTP-EQ---A 69 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCC-CEEEE------EeC-CCH-HH---H
Confidence 455668889999999999999999999999997622 223345555544331 22221 211 112 22 3
Q ss_pred HHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 92 HLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 92 ~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
+.+++.|+++|=. +.. ...+. ..+..+.++|.-.. || +| ..++.+.|||++|+
T Consensus 70 ~~a~~~Ga~~i~~----p~~-~~~~~~~~~~~~~~~i~gv~----t~--~e----~~~A~~~Gad~i~~ 123 (190)
T cd00452 70 DAAIAAGAQFIVS----PGL-DPEVVKAANRAGIPLLPGVA----TP--TE----IMQALELGADIVKL 123 (190)
T ss_pred HHHHHcCCCEEEc----CCC-CHHHHHHHHHcCCcEECCcC----CH--HH----HHHHHHCCCCEEEE
Confidence 5667789998832 211 11222 22334667776543 32 33 34445789999998
No 69
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.024 Score=55.37 Aligned_cols=44 Identities=32% Similarity=0.336 Sum_probs=39.0
Q ss_pred CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
..+++++++|.|+ ||.|++++..|.+.|++|++++|+.++++++
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV 80 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4567899999996 8899999999999999999999998887665
No 70
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.65 E-value=0.026 Score=58.06 Aligned_cols=43 Identities=33% Similarity=0.522 Sum_probs=38.8
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
..+.|++|+|+|+|..|+.++..+..+|++|+|+++++.|+..
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~ 240 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQ 240 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHH
Confidence 4568999999999999999999999999999999999887654
No 71
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.64 E-value=0.014 Score=54.10 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=32.9
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
++.++|+|+|+||.|..++..|+..|+ +|++++++
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999999999999999999999 89999988
No 72
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.63 E-value=0.068 Score=52.18 Aligned_cols=117 Identities=18% Similarity=0.277 Sum_probs=76.1
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
....+++|++.....++- +++.+.++.+ .++.+.|+-|-.|.-.. +|+ . +.+.+++--. + =|| +
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~----i~~---~-~i~~~I~p~K-D-VDG-l 122 (284)
T PRK14179 54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKH----INE---E-KILLAIDPKK-D-VDG-F 122 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCC----CCH---H-HHHhccCccc-c-ccc-c
Confidence 357899999988777763 3566777777 46789999999997522 221 1 1111222111 0 011 2
Q ss_pred EEEcC-------------cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEe
Q 015310 333 IGYNT-------------DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 333 ~G~NT-------------D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~n 398 (409)
+-+|. --.|++.-|+.. +.+++||+++|+|. |=+|+.++.-|.+.|+.|+++.
T Consensus 123 ~~~N~g~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~ 189 (284)
T PRK14179 123 HPMNTGHLWSGRPVMIPCTPAGIMEMFREY-------------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH 189 (284)
T ss_pred CHhhHHHHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence 21221 124555655432 36789999999998 6699999999999999999984
No 73
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.60 E-value=1.3 Score=42.28 Aligned_cols=199 Identities=18% Similarity=0.129 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCC----C-CCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----N-FQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLA 94 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~----~-~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 94 (409)
+.++.++-++.+.+.|+|.||+=.=--. - .++.+.++.+++.. +.++..-.|.. .+.++.+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-------------~~~i~~a 83 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-------------EKGIERA 83 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-------------hhhHHHH
Confidence 5677777777777889999998542211 0 12234455555444 46665555542 3456777
Q ss_pred HHcCCcEEEEeccCcc----------------chHHHHHhccCCCcEEEEec-cCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015310 95 EDLGADYVDFELKVAS----------------NILGKQYSSHQSGTRFIVSC-NLDCETPSEEDLGYLVSRMQATGADII 157 (409)
Q Consensus 95 ~~~g~dyvDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~-H~f~~tp~~~~l~~~~~~~~~~gaDiv 157 (409)
.+.|++.|-+=+...+ ...+.+..+++.+.++.++. .-|...-+.+++.++++++.++|+|.+
T Consensus 84 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i 163 (265)
T cd03174 84 LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI 163 (265)
T ss_pred HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 8889898888766551 12222224567788888888 444411235789999999999999999
Q ss_pred EEEeec--CCHhHHHHHHHHhccC-C-CCEEEEEcC--ccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310 158 KLVFSV--NDITEIARIFQLLSHC-Q-VPIIAYSVG--ERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (409)
Q Consensus 158 Kia~~~--~~~~D~~~ll~~~~~~-~-~p~i~~~MG--~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~ 230 (409)
-++=+. -+++++.++++.+.+. + .|+-.=+=- .+|...=+..-..|..+.=+++.. +-..|+.+.+++...++
T Consensus 164 ~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~ 243 (265)
T cd03174 164 SLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALE 243 (265)
T ss_pred EechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHH
Confidence 887443 3688888888876543 2 333211111 122233333333444444444433 35689999999887775
Q ss_pred hc
Q 015310 231 VE 232 (409)
Q Consensus 231 ~~ 232 (409)
..
T Consensus 244 ~~ 245 (265)
T cd03174 244 GL 245 (265)
T ss_pred hc
Confidence 43
No 74
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.59 E-value=1.8 Score=45.14 Aligned_cols=209 Identities=15% Similarity=0.139 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+.++.+.-++...+.|.+.+|.- .|. +-..++.+.+..+++. .+.++..-.|..+-=|..+.+++-..+.++
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~ 103 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Confidence 44566666666667799999994 552 2222445667777654 366776668877777777777777788899
Q ss_pred HHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEE--EeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--
Q 015310 93 LAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFI--VSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN-- 164 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI--~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~-- 164 (409)
.+++.|++.|-|=....+ ..+.+.+ .+++.|..+. +||-+ .| +.+.+.++.+++.+.|||.+-|+=|.-
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~---~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l 180 (448)
T PRK12331 104 KSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT---SPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL 180 (448)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 999999999888665533 1122233 3445555543 45443 23 457789999999999999988886665
Q ss_pred CHhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310 165 DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE 232 (409)
Q Consensus 165 ~~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~ 232 (409)
++.++.++.+.+.+. +.|+-.= +.--+|..+=+..-.-|....-+++.. +--.||++.+++...++..
T Consensus 181 ~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~ 252 (448)
T PRK12331 181 TPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDL 252 (448)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhc
Confidence 578888888776543 5554321 122234444444444454444444432 1237999999998887643
No 75
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.53 E-value=0.095 Score=51.11 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=77.3
Q ss_pred HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC---
Q 015310 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--- 330 (409)
Q Consensus 259 ~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--- 330 (409)
+.++++|++.....++. +++.+.++.+ .++...|+-|-+|+... +|+ . +.+.+++-..=- ||
T Consensus 54 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~----i~~---~-~i~~~I~p~KDV--DGl~~ 123 (282)
T PRK14180 54 KACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAH----INK---N-NVIYSIKPEKDV--DGFHP 123 (282)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH---H-HHHhhcCccccc--cccCh
Confidence 46889999988777764 3577777777 56789999999998522 221 1 122222222100 11
Q ss_pred ----eE-EEEc-----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310 331 ----KL-IGYN-----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 ----~l-~G~N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR 399 (409)
++ .|.+ .--.|++.-|+.. +.+++||+++|+|.+. +||.++.-|.+.|+.|+++.+
T Consensus 124 ~n~g~l~~g~~~~~~PcTp~aii~lL~~y-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs 190 (282)
T PRK14180 124 TNVGRLQLRDKKCLESCTPKGIMTMLREY-------------GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR 190 (282)
T ss_pred hhHHHHhcCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC
Confidence 11 2211 1125666665542 3678999999999877 999999999999999999865
No 76
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.53 E-value=0.38 Score=45.33 Aligned_cols=138 Identities=18% Similarity=0.205 Sum_probs=85.4
Q ss_pred EEeecc--CCHHHHHHHHHHHHhcCCCEE--EEEecCCCCCCChhHHHHHH---hcCCCcEEEEeccCCCCCCCC--CCH
Q 015310 14 CAPLMA--QSVEQVLSNMYQAKAEGADVV--EIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDE 84 (409)
Q Consensus 14 cv~l~~--~~~~e~~~~~~~~~~~~aD~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~ 84 (409)
|+++.+ .+.+....+++++...|+|.+ .+|.-.+......+.+.+++ +...+|+|+..+. +|-... .++
T Consensus 65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~~ 142 (235)
T cd00958 65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKDP 142 (235)
T ss_pred CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccCH
Confidence 455553 566777778899999999988 77765433211122344443 3468999997654 233221 234
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015310 85 HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (409)
Q Consensus 85 ~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDiv 157 (409)
++-....+.+.+.|+|||=+-.....+.++++... ....++++=.. +..+.++..+.++++.+.|++-+
T Consensus 143 ~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 143 DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence 44344466788999999999654444555666532 33456666321 23455778888899999999844
No 77
>PRK06196 oxidoreductase; Provisional
Probab=95.47 E-value=0.029 Score=55.22 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.++++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREA 66 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3467899999997 8899999999999999999999998887654
No 78
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.47 E-value=0.026 Score=56.59 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCCCCCEEEEEec-hhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310 364 SPLAGRMFVLAGA-GGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 364 ~~~~~~~vlvlGa-GGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la 408 (409)
.++++++++|+|| |.+|+.++..|.. .|+ +++++||+.+++..++
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La 198 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ 198 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence 4678999999999 6799999999975 577 9999999999988775
No 79
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.42 E-value=0.026 Score=56.01 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=37.8
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
.|+.++|.|| ||.|++++..|++.|++|.+++|+.++.++++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~ 94 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVS 94 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 4789999996 88999999999999999999999999877653
No 80
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.40 E-value=0.11 Score=50.67 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=76.8
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
...++++|++.....++- +++.+.++.+ .++++.|+-|-+|+.. ++|+ -+.+.+++--.=- || +
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~----~~~~----~~i~~~I~p~KDV--DG-l 122 (278)
T PRK14172 54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPK----HLDE----KKITNKIDANKDI--DC-L 122 (278)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CCCH----HHHHhccCccccc--Cc-c
Confidence 357889999998887763 3566677777 4678999999999752 2222 1122222221100 11 1
Q ss_pred EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310 333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n 398 (409)
+-+| .--.|++.-|+.. +.+++||+++|+|-+. +|+.++.-|.+.|+.|+++.
T Consensus 123 ~~~n~g~l~~g~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~ch 189 (278)
T PRK14172 123 TFISVGKFYKGEKCFLPCTPNSVITLIKSL-------------NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICH 189 (278)
T ss_pred CHhhHHHHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 1111 1124555555432 3678999999999777 99999999999999999987
Q ss_pred C
Q 015310 399 I 399 (409)
Q Consensus 399 R 399 (409)
.
T Consensus 190 s 190 (278)
T PRK14172 190 S 190 (278)
T ss_pred C
Confidence 4
No 81
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.38 E-value=0.037 Score=50.15 Aligned_cols=43 Identities=33% Similarity=0.425 Sum_probs=37.0
Q ss_pred CCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL 405 (409)
Q Consensus 363 ~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~ 405 (409)
+..+.|+++.|+|.|..|++++..|..+|++|+.++|+.....
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 3568899999999999999999999999999999999977543
No 82
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.37 E-value=1.3 Score=39.89 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc--C-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK--K-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL 97 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~--~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 97 (409)
+.+.+.+.++.+.+.|+|.+++-- +.++.+++. . +.|+++.+-... +. ..-++-.+..+.+.+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence 677777778888888999998775 233334332 2 588887664321 11 2246777888999999
Q ss_pred CCcEEEEeccCc-------c---chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC---
Q 015310 98 GADYVDFELKVA-------S---NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--- 164 (409)
Q Consensus 98 g~dyvDiEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--- 164 (409)
|+|.+.+-.... + +.++++...-+.+..+++- +....+.+.+++.+..+.++..|+|.+|......
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy-~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~ 156 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI-LETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG 156 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE-EECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence 999999864431 1 2233333221134554443 3333333456777777777788999999776422
Q ss_pred -CHhHHHHHHHH
Q 015310 165 -DITEIARIFQL 175 (409)
Q Consensus 165 -~~~D~~~ll~~ 175 (409)
+.+.+..+.+.
T Consensus 157 ~~~~~~~~i~~~ 168 (201)
T cd00945 157 ATVEDVKLMKEA 168 (201)
T ss_pred CCHHHHHHHHHh
Confidence 45555444443
No 83
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.36 E-value=0.14 Score=49.92 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=75.4
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++..-..++. +++.+.++.+ .+++..|+-|-.|... ++|+ . +.+.+++--.=- ||
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~----~i~~---~-~i~~~I~p~KDV--DGl~ 122 (281)
T PRK14183 53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPK----HIDT---T-KILEAIDPKKDV--DGFH 122 (281)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCC----CCCH---H-HHHhccCchhcc--cccC
Confidence 456889999987666643 3577777777 5678999999999852 2221 0 111222211100 11
Q ss_pred -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeC
Q 015310 331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR 399 (409)
++ .|.+ .--.|++.-|+.. +.+++||+++|+|.| -+|+.++.-|.+.|+.|+++..
T Consensus 123 ~~n~g~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs 189 (281)
T PRK14183 123 PYNVGRLVTGLDGFVPCTPLGVMELLEEY-------------EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI 189 (281)
T ss_pred hhhhhHHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 11 1111 1135666665542 368999999999988 4999999999999999998864
No 84
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.33 E-value=0.021 Score=53.42 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=32.7
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++++|+|+|+||.|..++..|...|+ ++++++.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999999999999999999999 89999987
No 85
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.31 E-value=0.033 Score=57.13 Aligned_cols=43 Identities=35% Similarity=0.567 Sum_probs=38.6
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
..+.|++++|+|.|..|+.++..+..+|++|+++++++.++.+
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~ 233 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALE 233 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHH
Confidence 3478999999999999999999999999999999999877643
No 86
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.30 E-value=1.1 Score=41.90 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCC-CCCCCCHHHHHHHHHHHHHcCC
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAG-GLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~~~~g~ 99 (409)
+.+++.+-++.+...|+.++++. + .+.++.+++..++|+|...|..-.+ -.+-.. ..+.++.+.+.|+
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~-------~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~aGa 89 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN-------G-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAAAGA 89 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC-------C-HHHHHHHHHhCCCCEEEEEecCCCCCCceECC---CHHHHHHHHHcCC
Confidence 34455555666667789889862 1 3467777777799998776622111 122111 2234578888999
Q ss_pred cEEEEeccC---cc-chHHHHH-hccC-CCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 100 DYVDFELKV---AS-NILGKQY-SSHQ-SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 100 dyvDiEl~~---~~-~~~~~l~-~~~~-~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
|+|=+.+.. +. +...+++ ..++ .+..++...|+ .+++ .++.+.|+|++.+
T Consensus 90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t------~ee~----~~a~~~G~d~i~~ 145 (221)
T PRK01130 90 DIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCST------LEEG----LAAQKLGFDFIGT 145 (221)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCC------HHHH----HHHHHcCCCEEEc
Confidence 988776653 11 2233444 3455 78888887763 3343 5678899999976
No 87
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.29 E-value=0.019 Score=54.85 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=33.1
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChH
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE 402 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ 402 (409)
+++++|+|+|+||.|..++..|...|+ ++++++.+.-
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 456789999999999999999999999 9999988743
No 88
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.12 Score=50.42 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=77.6
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
.+.++++|++.....++. +++.+.++.+ .++++.|+-|-+|... ++|+ -+.+.+++.-.=- || +
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~----~id~----~~i~~~I~p~KDV--DG-l 122 (288)
T PRK14171 54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPS----SIDK----NKILSAVSPSKDI--DG-F 122 (288)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC----CCCH----HHHHhccCccccc--cc-C
Confidence 456889999988777753 3566667666 4678999999999753 2221 1122222221100 11 2
Q ss_pred EEEcC--------c------HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310 333 IGYNT--------D------CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF 397 (409)
Q Consensus 333 ~G~NT--------D------~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~ 397 (409)
+-+|. . -.|++.-|+.. +.+++||+++|+|-+. +||.++.-|.+.|+.|+++
T Consensus 123 ~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtic 189 (288)
T PRK14171 123 HPLNVGYLHSGISQGFIPCTALGCLAVIKKY-------------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTIC 189 (288)
T ss_pred CccchhhhhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEe
Confidence 11111 1 25556655432 3678999999999877 9999999999999999988
Q ss_pred e-CCh
Q 015310 398 D-IDF 401 (409)
Q Consensus 398 n-R~~ 401 (409)
. ||.
T Consensus 190 hs~T~ 194 (288)
T PRK14171 190 HSKTH 194 (288)
T ss_pred CCCCC
Confidence 7 443
No 89
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.15 E-value=1.1 Score=41.41 Aligned_cols=143 Identities=14% Similarity=0.102 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC--CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 015310 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED 96 (409)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 96 (409)
..+.+++.+.++++.+.++|.+=+.-- .+...++.. ....+-|.-.-+.|. .+.+....-.+.+++
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p~---------~v~~~~~~l~~~~~~v~~~~~fp~g~---~~~~~k~~eve~A~~ 80 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNPC---------FVPLAREALKGSGVKVCTVIGFPLGA---TTTEVKVAEAREAIA 80 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcHH---------HHHHHHHHcCCCCcEEEEEEecCCCC---CcHHHHHHHHHHHHH
Confidence 447888888888888778888865422 222222211 223344443333333 234555555789999
Q ss_pred cCCcEEEEeccCc-------cchHHH---HHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--ee-
Q 015310 97 LGADYVDFELKVA-------SNILGK---QYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--FS- 162 (409)
Q Consensus 97 ~g~dyvDiEl~~~-------~~~~~~---l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia--~~- 162 (409)
.|+|-||+=++.. +...++ +.. .+....|+|+-.-.. +.+++....+-+.+.|||++|.. ..
T Consensus 81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~ 156 (203)
T cd00959 81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGP 156 (203)
T ss_pred cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 9999999966553 112233 332 232234555544332 34678888888999999999997 33
Q ss_pred -cCCHhHHHHHHHHhc
Q 015310 163 -VNDITEIARIFQLLS 177 (409)
Q Consensus 163 -~~~~~D~~~ll~~~~ 177 (409)
+.+++|+..+.+...
T Consensus 157 ~~at~~~v~~~~~~~~ 172 (203)
T cd00959 157 GGATVEDVKLMKEAVG 172 (203)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 346778776666654
No 90
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.14 E-value=0.67 Score=43.03 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH---HHH
Q 015310 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA---LHL 93 (409)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l---l~~ 93 (409)
..+.+++. .+.+.|||-||+.-++-. ...|. ..++.+++..++|+-+-+|++ ||-|-.++++...+ ++.
T Consensus 7 v~s~~~a~----~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr--~gdF~Ys~~E~~~M~~dI~~ 80 (201)
T PF03932_consen 7 VESLEDAL----AAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPR--GGDFVYSDEEIEIMKEDIRM 80 (201)
T ss_dssp ESSHHHHH----HHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SS--SS-S---HHHHHHHHHHHHH
T ss_pred eCCHHHHH----HHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCC--CCCccCCHHHHHHHHHHHHH
Confidence 34555544 456789999999998754 33342 355666677899999999965 56666777554444 456
Q ss_pred HHHcCCcEEEEec-----cCccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCC
Q 015310 94 AEDLGADYVDFEL-----KVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGAD 155 (409)
Q Consensus 94 ~~~~g~dyvDiEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaD 155 (409)
+.++|+|-+-+=. ..+.+..++++.. .++..+.. |- |+.+++.+ +-++++.++|.|
T Consensus 81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~-a~~~~~tF--HRAfD~~~d~~---~al~~L~~lG~~ 142 (201)
T PF03932_consen 81 LRELGADGFVFGALTEDGEIDEEALEELIEA-AGGMPVTF--HRAFDEVPDPE---EALEQLIELGFD 142 (201)
T ss_dssp HHHTT-SEEEE--BETTSSB-HHHHHHHHHH-HTTSEEEE---GGGGGSSTHH---HHHHHHHHHT-S
T ss_pred HHHcCCCeeEEEeECCCCCcCHHHHHHHHHh-cCCCeEEE--eCcHHHhCCHH---HHHHHHHhcCCC
Confidence 6678888766532 2233566677743 24666655 54 99999754 445666666855
No 91
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.11 E-value=0.026 Score=56.58 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=33.5
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~ 401 (409)
+++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 567899999999999999999999999 999999984
No 92
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.10 E-value=0.13 Score=50.24 Aligned_cols=120 Identities=19% Similarity=0.302 Sum_probs=78.4
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
..+.+++|++.....++. +++.+.++.+ .++.+.|+-|-.|... ++|+ -+.+.+++--.=- ||
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~----~i~~----~~i~~~I~p~KDV--DGl~ 121 (282)
T PRK14182 52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPK----HVDE----RAVLDAISPAKDA--DGFH 121 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccCc--CCCC
Confidence 456889999988777753 3577777777 5678999999999852 2221 1222233322100 11
Q ss_pred -----eE-EEE-----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310 331 -----KL-IGY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 331 -----~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n 398 (409)
++ .|. -.--.|++.-|+.. +.+++||+++|+|-+. .||.++.-|.+.|+.|+++.
T Consensus 122 ~~n~g~l~~g~~~~~~PcTp~avi~ll~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtich 188 (282)
T PRK14182 122 PFNVGALSIGIAGVPRPCTPAGVMRMLDEA-------------RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAH 188 (282)
T ss_pred HhHHHHHhCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 11 111 11135666666542 3678999999999877 99999999999999999887
Q ss_pred CC
Q 015310 399 ID 400 (409)
Q Consensus 399 R~ 400 (409)
..
T Consensus 189 s~ 190 (282)
T PRK14182 189 SR 190 (282)
T ss_pred CC
Confidence 53
No 93
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.07 E-value=0.081 Score=55.17 Aligned_cols=42 Identities=36% Similarity=0.507 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL 405 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~ 405 (409)
..+.||+++|+|.|..||+++..|..+|++|+++++++.++.
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~ 291 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICAL 291 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence 568899999999999999999999999999999999877653
No 94
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.05 E-value=3.5 Score=43.53 Aligned_cols=210 Identities=15% Similarity=0.075 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+.+|++.-++..-+.|.+.+|.- .|- +...++.+.+..+++. .+.++-.-+|-.+==|....+++-....++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 45677777777777899999997 663 1222455667777654 378888889977666766777777788899
Q ss_pred HHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEE--EEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310 93 LAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRF--IVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN--D 165 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~ki--I~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~ 165 (409)
.+.+.|+|.+-|=....+ +.++..+ ..++.+..+ -++|-. ... +.+.+.++.+++.+.|||.+=|+=|.- +
T Consensus 105 ~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~--t~e~~~~~a~~l~~~Gad~I~IkDtaGll~ 182 (499)
T PRK12330 105 KSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH--TVEGFVEQAKRLLDMGADSICIKDMAALLK 182 (499)
T ss_pred HHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC--CHHHHHHHHHHHHHcCCCEEEeCCCccCCC
Confidence 999999999887544433 1112222 223333333 344411 111 357799999999999999998886665 5
Q ss_pred HhHHHHHHHHhccC---CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310 166 ITEIARIFQLLSHC---QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE 232 (409)
Q Consensus 166 ~~D~~~ll~~~~~~---~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~ 232 (409)
+.++.++.+.+.+. +.|+-.= +.--++..+=+..-.-|....-+++.. +-.+||++.+++...++..
T Consensus 183 P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~ 255 (499)
T PRK12330 183 PQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGT 255 (499)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhc
Confidence 78888888887543 3554321 222234444444444555544445443 4578999999998887643
No 95
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.03 E-value=0.14 Score=50.07 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=78.1
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
.+.++++|++.....++. +++.+.++.+ .++++.|+-|-+|+... +|+ . +.+.+++--.=- ||
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~---~-~i~~~I~p~KDV--DGl~ 124 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQ----IDE---R-AAFDRIALEKDV--DGVT 124 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH---H-HHHhccCccccc--ccCC
Confidence 457899999988877753 3576777777 45789999999997522 221 1 111222221100 11
Q ss_pred -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe-
Q 015310 331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD- 398 (409)
Q Consensus 331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n- 398 (409)
++ .|.. .--.|++.-|+.. +.+++||+++|+|.+. .||.++.-|.+.|+.|+++.
T Consensus 125 ~~n~g~l~~g~~~~~PcTp~avi~ll~~y-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs 191 (284)
T PRK14177 125 TLSFGKLSMGVETYLPCTPYGMVLLLKEY-------------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHS 191 (284)
T ss_pred hhhHHHHHcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 11 1111 1125666665542 3679999999999877 99999999999999999987
Q ss_pred CCh
Q 015310 399 IDF 401 (409)
Q Consensus 399 R~~ 401 (409)
||.
T Consensus 192 ~T~ 194 (284)
T PRK14177 192 KTQ 194 (284)
T ss_pred CCC
Confidence 443
No 96
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.02 E-value=1 Score=44.12 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=79.0
Q ss_pred HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCc------------------cchHHHHH-
Q 015310 57 EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA------------------SNILGKQY- 117 (409)
Q Consensus 57 ~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~------------------~~~~~~l~- 117 (409)
..+.+..++|+++.. |+| ++.....+..+..++.|+.-|-||-... ++..+.+.
T Consensus 71 ~~I~~a~~~Pv~~D~----d~G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~A 143 (285)
T TIGR02320 71 EFMFDVTTKPIILDG----DTG---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRA 143 (285)
T ss_pred HHHHhhcCCCEEEec----CCC---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHH
Confidence 344455699999986 555 4677777888999999999999976531 22334443
Q ss_pred --hccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc--CCCCEE
Q 015310 118 --SSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH--CQVPII 184 (409)
Q Consensus 118 --~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~--~~~p~i 184 (409)
.++...--+|...-| +-..-..++.+++.+...+.|||.+=+-..+.+.+++.++.+.... .+.|++
T Consensus 144 a~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 144 GKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence 222222123333322 2112247888999999999999999876556888888888776543 245764
No 97
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.01 E-value=0.032 Score=53.35 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=32.3
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 467899999999999999999999999 99999875
No 98
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.99 E-value=1.2 Score=41.58 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD 100 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~d 100 (409)
+..++.+-++.+...|+.++|+ +. .+.++.+++..++|++.-+|..-++...-.++ +.+.++.+.+.|++
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~--~~------~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~--~~~~~~~a~~aGad 94 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRA--NG------VEDIRAIRARVDLPIIGLIKRDYPDSEVYITP--TIEEVDALAAAGAD 94 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEc--CC------HHHHHHHHHhCCCCEEEEEecCCCCCCceeCC--CHHHHHHHHHcCCC
Confidence 3345666677777889999884 21 23566666667999987666432221111121 34567888999999
Q ss_pred EEEEeccC---cc-chHHHHH-hccCCC-cEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 101 YVDFELKV---AS-NILGKQY-SSHQSG-TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 101 yvDiEl~~---~~-~~~~~l~-~~~~~~-~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
+|=+.... +. +...+++ ..++.+ ..++...|+ | ++. .++.+.|+|++++
T Consensus 95 ~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t----~--~ea----~~a~~~G~d~i~~ 149 (219)
T cd04729 95 IIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIST----L--EEA----LNAAKLGFDIIGT 149 (219)
T ss_pred EEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC----H--HHH----HHHHHcCCCEEEc
Confidence 88665433 21 1233343 333344 677776552 2 333 5566789999875
No 99
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.97 E-value=0.16 Score=49.69 Aligned_cols=120 Identities=19% Similarity=0.321 Sum_probs=76.5
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++.....++. +++.+.++.+ .++++.|+-|-+|.-. ++|+ . +.+.+++--.=- ||
T Consensus 51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~ 120 (287)
T PRK14173 51 DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPP----HIDF---Q-RVLEAIDPLKDV--DGFH 120 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccccc--cccC
Confidence 346789999998877763 3577777777 4567999999999752 2222 1 122222221100 11
Q ss_pred -----eE-EEE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310 331 -----KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 -----~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR 399 (409)
++ .|. -.--.|++.-|+.. +.+++||+++|+|.+. +|+.++.-|.+.|+.|+++.+
T Consensus 121 ~~N~g~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs 187 (287)
T PRK14173 121 PLNVGRLWMGGEALEPCTPAGVVRLLKHY-------------GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHS 187 (287)
T ss_pred hhhhHHHhcCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCC
Confidence 11 111 11124555555432 3678999999999877 999999999999999988764
Q ss_pred C
Q 015310 400 D 400 (409)
Q Consensus 400 ~ 400 (409)
.
T Consensus 188 ~ 188 (287)
T PRK14173 188 K 188 (287)
T ss_pred C
Confidence 3
No 100
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.96 E-value=0.044 Score=54.41 Aligned_cols=45 Identities=29% Similarity=0.285 Sum_probs=40.7
Q ss_pred CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
.++.++.++|-|+ .|.|++++.+|+..|++|++.+|+.+++++.+
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~ 76 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAK 76 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 4577899999995 99999999999999999999999999988764
No 101
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.90 E-value=3.6 Score=43.16 Aligned_cols=210 Identities=13% Similarity=0.110 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEE----EecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEI----RLDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vEl----RlD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+.++.+.-++...+.|.+.+|. ..|. |-..++.+.+..+++. .+.++-.-+|..+--|.....++-....++
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 4566666677777789999998 3442 1122345566666654 366777777877766765555555666788
Q ss_pred HHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEEEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015310 93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DI 166 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--~~ 166 (409)
.+++.|++.|-|=....+ ...+.+..+++.+..+.+.... ...| +.+.+.++.+++.+.|||.+-|+=|.- ++
T Consensus 103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~-t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P 181 (467)
T PRK14041 103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISY-TVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTP 181 (467)
T ss_pred HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCH
Confidence 999999999887655543 2222222345556666544332 1124 457789999999999999988876654 57
Q ss_pred hHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 167 TEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 167 ~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
.++.++.+.+.+. +.|+-.= +.--+|..+=+..-..|....-+++.. +--.||++.+++...++.
T Consensus 182 ~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~ 250 (467)
T PRK14041 182 KRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRE 250 (467)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHh
Confidence 8888888776543 5554211 222233344444444454443344332 122479999998887764
No 102
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.90 E-value=0.034 Score=52.51 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.8
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 456799999999999999999999999 99999755
No 103
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.90 E-value=0.17 Score=49.42 Aligned_cols=118 Identities=18% Similarity=0.240 Sum_probs=76.4
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
....+++|++.....++. +++.+.++.+ .++.+.|+-|-.|.-. ++|+ . +.+.+++--.=- || +
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~----~i~~---~-~i~~~I~p~KDV--DG-l 121 (284)
T PRK14170 53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPE----HISE---E-KVIDTISYDKDV--DG-F 121 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CCCH---H-HHHhccCcccCc--cc-C
Confidence 446789999988777764 3566777777 5678999999999752 2222 1 122222221100 11 1
Q ss_pred EEEcC-------------cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310 333 IGYNT-------------DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 333 ~G~NT-------------D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n 398 (409)
+-+|. --.|++.-|+.. +.+++||+|+|+|.+. +||.++.-|.+.|+.|+++.
T Consensus 122 ~p~N~g~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtich 188 (284)
T PRK14170 122 HPVNVGNLFIGKDSFVPCTPAGIIELIKST-------------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAH 188 (284)
T ss_pred ChhhhhHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 11111 135666665532 3688999999999877 99999999999999998875
Q ss_pred C
Q 015310 399 I 399 (409)
Q Consensus 399 R 399 (409)
.
T Consensus 189 s 189 (284)
T PRK14170 189 S 189 (284)
T ss_pred C
Confidence 4
No 104
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.85 E-value=0.035 Score=55.70 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=33.3
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~ 401 (409)
+++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 557899999999999999999999999 999999874
No 105
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=94.85 E-value=0.85 Score=47.22 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=81.9
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCC-cEEEEeccCCCCCCCCCCHHHH
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPL-PVLIVYRPKWAGGLYEGDEHKR 87 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~-PiI~T~R~~~eGG~~~~~~~~~ 87 (409)
.+|++++-+-..++++.++.++.+.+.|+|++|.-..... ....+.++.+.+.... .++..+|....| +.
T Consensus 2 ~~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-~~~~~~i~~l~~~~~~~~ii~D~kl~d~g-------~~- 72 (430)
T PRK07028 2 ERPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIK-SEGMNAIRTLRKNFPDHTIVADMKTMDTG-------AI- 72 (430)
T ss_pred CCceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhhHHHHHHHHHHCCCCEEEEEeeeccch-------HH-
Confidence 3789999999999999999999988899999996322110 0112355666554433 455666765332 12
Q ss_pred HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310 88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (409)
Q Consensus 88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia 160 (409)
.++.+.+.|+++|-+-...+.....+++ ..++.+.++++-.. .+++. .+.++++.+.|+|++++-
T Consensus 73 --~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~---s~~t~---~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 --EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI---NVPDP---VKRAVELEELGVDYINVH 138 (430)
T ss_pred --HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec---CCCCH---HHHHHHHHhcCCCEEEEE
Confidence 4567888999998864322221122222 33446777775211 11111 233566677899999875
No 106
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.82 E-value=1 Score=44.20 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=59.4
Q ss_pred CeeEEEeeccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCC----------CChhHHHH----HHhcCCCcEEEEeccC
Q 015310 10 TTMICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNF----------QPGKDLEI----ILTKKPLPVLIVYRPK 74 (409)
Q Consensus 10 ~~~icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~----------~~~~~l~~----l~~~~~~PiI~T~R~~ 74 (409)
+|. .+++.+. +.+++.+.++.+.+.|+|++|+=+.+-... .+.+.+.+ +++..++|+.+-+|..
T Consensus 100 ~p~-i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~ 178 (299)
T cd02940 100 KIL-IASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN 178 (299)
T ss_pred CeE-EEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 454 5888888 999999888887667999999988874421 11223333 3344589999998852
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015310 75 WAGGLYEGDEHKRLEALHLAEDLGADYVD 103 (409)
Q Consensus 75 ~eGG~~~~~~~~~~~ll~~~~~~g~dyvD 103 (409)
.++..++.+.+.+.|+|.|-
T Consensus 179 ---------~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 179 ---------ITDIREIARAAKEGGADGVS 198 (299)
T ss_pred ---------chhHHHHHHHHHHcCCCEEE
Confidence 22566777888888998774
No 107
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.80 E-value=0.36 Score=47.01 Aligned_cols=89 Identities=24% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-------CC---hhHHHHHHhcCCCcEEEEeccCCCCC
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-------QP---GKDLEIILTKKPLPVLIVYRPKWAGG 78 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-------~~---~~~l~~l~~~~~~PiI~T~R~~~eGG 78 (409)
..| +.++|.+.+.+++.+.++.+.+.|+|+||+=+-+-... ++ .+.++.+++..++|+++-++..
T Consensus 98 ~~p-vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---- 172 (289)
T cd02810 98 GQP-LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---- 172 (289)
T ss_pred CCe-EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----
Confidence 344 56899999999999999988888999999987643211 11 1234445555689999998863
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 79 LYEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
.++++..++.+.+.+.|+|+|.+-
T Consensus 173 ---~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 173 ---FDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred ---CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 246677888899999999999975
No 108
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.79 E-value=3.3 Score=44.77 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+.++.+.-++...+.|.+.+|.- .|. +-..++.+.+..+++. .+.++-.-+|..+-=|..+.+++-..+.++
T Consensus 24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 45666666667777899999995 563 2222455666666655 368888888877777776677777788899
Q ss_pred HHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEE--EeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--
Q 015310 93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFI--VSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN-- 164 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI--~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~-- 164 (409)
.+.+.|++.+-|=....+ +..+.+..+++.+..+- +||- ..| +.+.+.+..+++.+.|||.+=|+=|.-
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t---~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~ 180 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYT---TSPVHTIEKYVELAKELEEMGCDSICIKDMAGLL 180 (592)
T ss_pred HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEec---cCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCc
Confidence 999999998877655433 22222223444555554 3332 134 457799999999999999988876654
Q ss_pred CHhHHHHHHHHhccC-CCCEEEE---EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 165 DITEIARIFQLLSHC-QVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 165 ~~~D~~~ll~~~~~~-~~p~i~~---~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
++.++.++.+.+.+. +.|+ .+ +..-++..+=+..-..|..+.-+++.. +--.||++++++...++.
T Consensus 181 ~P~~~~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~agn~~~e~vv~~L~~ 251 (592)
T PRK09282 181 TPYAAYELVKALKEEVDLPV-QLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFGTSQPPTESMVAALKG 251 (592)
T ss_pred CHHHHHHHHHHHHHhCCCeE-EEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCCcCCHhHHHHHHHHHh
Confidence 477888887776433 4443 33 233344444444444454443333322 112378888887766653
No 109
>PLN02494 adenosylhomocysteinase
Probab=94.77 E-value=0.055 Score=56.34 Aligned_cols=41 Identities=34% Similarity=0.528 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka 404 (409)
..+.|++++|+|.|..|++++..+..+|++|+++++++.++
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~ 290 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICA 290 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 44789999999999999999999999999999999998764
No 110
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.76 E-value=0.047 Score=48.60 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++|++++|+|+|.+|..-+..|.+.|++|+|++.+.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 56889999999999999999999999999999998653
No 111
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.73 E-value=1.5 Score=38.82 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCh----hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG 98 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~----~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g 98 (409)
+...+.++.+.+.|+|+++++.......... +.+..+.+..+.|+++-...... .+......+.+.+.|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~g 84 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDA-------AAAVDIAAAAARAAG 84 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCc-------hhhhhHHHHHHHHcC
Confidence 4555566666677999999998765543221 12555556678999988764321 111111134667789
Q ss_pred CcEEEEeccCc------cchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310 99 ADYVDFELKVA------SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS 162 (409)
Q Consensus 99 ~dyvDiEl~~~------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~ 162 (409)
+|+|.|-.... .+.++.+.... .+..++...|...... +. .+.+.|+|.+.+...
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~---~~-----~~~~~g~d~i~~~~~ 145 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA---AA-----AAEEAGVDEVGLGNG 145 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc---hh-----hHHHcCCCEEEEcCC
Confidence 99998877663 23344443221 3688888887532111 11 156779999887654
No 112
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.21 Score=48.69 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=77.8
Q ss_pred HHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHH--hhhhhhcHHHHHhccceEEEEeCCC
Q 015310 257 HNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSD 329 (409)
Q Consensus 257 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~--~~~d~~~~~A~~igAvNti~~~~~~ 329 (409)
-.+.++++|++.....++. +++...++.+ .++.+.|+-|-+|+...+- ..++.+++. +.+-..+..- -
T Consensus 51 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~N----~ 125 (282)
T PRK14169 51 KQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD-KDVDGFSPVS----V 125 (282)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----h
Confidence 3457889999988777764 3577777777 4678999999999753221 111111110 1111111100 0
Q ss_pred CeEE-EE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe-CCh
Q 015310 330 GKLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD-IDF 401 (409)
Q Consensus 330 g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n-R~~ 401 (409)
|+++ |. -.--.|++.-|+.. +.+++||+++|+|.+. +||.++.-|.+.|+.|+++. ||.
T Consensus 126 g~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~ 191 (282)
T PRK14169 126 GRLWANEPTVVASTPYGIMALLDAY-------------DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR 191 (282)
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC
Confidence 1111 10 11124566655442 3678999999999877 99999999999999999985 554
No 113
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.70 E-value=0.56 Score=42.95 Aligned_cols=122 Identities=17% Similarity=0.102 Sum_probs=68.1
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (409)
+++.-+...+.++....++.+.+.|+.++|+|..-... .+.++.+++.. |.+ .. .+|.. ... ++ +
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~--~~~-~~----g~gtv-l~~-d~---~ 77 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKL--PEC-II----GTGTI-LTL-ED---L 77 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhC--CCc-EE----eEEEE-EcH-HH---H
Confidence 45566888999999999999999999999999764432 23344343322 221 00 11221 122 33 3
Q ss_pred HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN 164 (409)
Q Consensus 92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~ 164 (409)
+.+++.|+++|=+--.. .+..+ .... .+--.+++ .| || +| +.++.+.|+|++|+ .|.
T Consensus 78 ~~A~~~gAdgv~~p~~~-~~~~~-~~~~-~~~~~i~G-~~----t~--~e----~~~A~~~Gadyv~~--Fpt 134 (187)
T PRK07455 78 EEAIAAGAQFCFTPHVD-PELIE-AAVA-QDIPIIPG-AL----TP--TE----IVTAWQAGASCVKV--FPV 134 (187)
T ss_pred HHHHHcCCCEEECCCCC-HHHHH-HHHH-cCCCEEcC-cC----CH--HH----HHHHHHCCCCEEEE--CcC
Confidence 46778899998322111 11111 1111 12233455 55 33 23 34555689999998 554
No 114
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.67 E-value=0.23 Score=48.40 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=80.0
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
....+++|++.....++. +++.+.++.+ .++++.|+-|-.|.-.. +|+ . +.+.+++--. + -|| +
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~---~-~v~~~I~p~K-D-VDG-l 116 (279)
T PRK14178 48 HRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKG----VDT---E-RVIAAILPEK-D-VDG-F 116 (279)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH---H-HHHhccCccc-C-ccc-C
Confidence 456789999988777754 3677777777 56789999999997422 222 1 1111222111 0 011 1
Q ss_pred EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEe
Q 015310 333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~n 398 (409)
+-+| .--.|++.-|+.. +.+++|++|+|+|-+ -.+|.++.-|...|+.|+++.
T Consensus 117 ~~~n~g~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~h 183 (279)
T PRK14178 117 HPLNLGRLVSGLPGFAPCTPNGIMTLLHEY-------------KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICH 183 (279)
T ss_pred ChhhHHHHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEe
Confidence 1111 1124566655432 367899999999988 599999999999999999988
Q ss_pred CChHHHH
Q 015310 399 IDFEQSL 405 (409)
Q Consensus 399 R~~~ka~ 405 (409)
++....+
T Consensus 184 s~t~~L~ 190 (279)
T PRK14178 184 SKTENLK 190 (279)
T ss_pred cChhHHH
Confidence 7654433
No 115
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.64 E-value=0.043 Score=53.18 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=32.4
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++.+|+|+|+||+|..++.+|+..|+ +|+|++.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 567899999999999999999999998 99999865
No 116
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.59 E-value=0.28 Score=47.93 Aligned_cols=120 Identities=15% Similarity=0.258 Sum_probs=76.1
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
.+.++++|++.....++- +++.+.++.+ .++++.|+-|-+|.... +|+ . +.+.+++--. + =||
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~----i~~---~-~i~~~I~p~K-D-VDGl~ 123 (284)
T PRK14190 54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKH----IDE---K-AVIERISPEK-D-VDGFH 123 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH---H-HHHhcCCccc-c-ccccC
Confidence 456889999988777764 3677777777 46689999999997522 221 1 1111222111 0 011
Q ss_pred -----eE-EEE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310 331 -----KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 -----~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR 399 (409)
++ .|. -.--.|++.-|+.. +.+++||+++|+|.+. +||.++.-|.+.|+.|+++..
T Consensus 124 ~~n~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs 190 (284)
T PRK14190 124 PINVGRMMLGQDTFLPCTPHGILELLKEY-------------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS 190 (284)
T ss_pred HhhHHHHhcCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC
Confidence 11 110 01124555555432 3678999999999877 999999999999999998854
Q ss_pred C
Q 015310 400 D 400 (409)
Q Consensus 400 ~ 400 (409)
.
T Consensus 191 ~ 191 (284)
T PRK14190 191 K 191 (284)
T ss_pred C
Confidence 3
No 117
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.58 E-value=0.044 Score=55.33 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=33.0
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~ 401 (409)
+++++|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457899999999999999999999999 999998874
No 118
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.58 E-value=3.4 Score=39.84 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=53.7
Q ss_pred EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHH-hcCCCc-EEEE
Q 015310 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIIL-TKKPLP-VLIV 70 (409)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~-~~~~~P-iI~T 70 (409)
-++.-.++.+...+-++...+.|+|++|+-+-+-++.-+. +.+++++ +..+.| ++.|
T Consensus 17 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~ 96 (258)
T PRK13111 17 YITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT 96 (258)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4566778999999888888889999999999876654321 2334444 335788 5566
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310 71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF 104 (409)
Q Consensus 71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi 104 (409)
+-+.- +... .-++++.+.+.|++-+=|
T Consensus 97 Y~N~i----~~~G---~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 97 YYNPI----FQYG---VERFAADAAEAGVDGLII 123 (258)
T ss_pred cccHH----hhcC---HHHHHHHHHHcCCcEEEE
Confidence 54320 1111 124577777788765433
No 119
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.57 E-value=2.6 Score=42.24 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEE---------EecC-CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEI---------RLDC-INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLE 89 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vEl---------RlD~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ 89 (409)
+.++..+-++...+.|+|.||. -+++ +...++.+.+..+++.. +..+..-+++ |. .. .+
T Consensus 22 ~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p----g~--~~----~~ 91 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP----GI--GT----VH 91 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc----Cc--cC----HH
Confidence 3455555556666789999999 3333 33334445555555433 3344333333 11 11 23
Q ss_pred HHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310 90 ALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--D 165 (409)
Q Consensus 90 ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~ 165 (409)
-++.+.+.|++.|-|=....+ +...+.+ .+++.+.++.++.-+-..+ +.+++.++.+.+.++|||.+=++=+.- +
T Consensus 92 dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~ 170 (333)
T TIGR03217 92 DLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCVYIVDSAGAML 170 (333)
T ss_pred HHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEEEEccCCCCCC
Confidence 368888999999887655443 2233333 4566677776655442223 357899999999999999987775544 5
Q ss_pred HhHHHHHHHHhccC-C--CCEEEEE-cCc--cchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 166 ITEIARIFQLLSHC-Q--VPIIAYS-VGE--RGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 166 ~~D~~~ll~~~~~~-~--~p~i~~~-MG~--~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
++|+.++...+.+. + .|+ .+- =-. ++...=+..-.-|....=+++.. +...|+.+++++...++.
T Consensus 171 P~~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~ 242 (333)
T TIGR03217 171 PDDVRDRVRALKAVLKPETQV-GFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDR 242 (333)
T ss_pred HHHHHHHHHHHHHhCCCCceE-EEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHHh
Confidence 88998888876543 2 333 221 011 11111111112233332233322 245788888887766553
No 120
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.53 E-value=0.25 Score=48.20 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=76.7
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++.....++. +++...++.+ .++++.|+-|-+|.... +|+ . +.+.+++--.=- ||
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~----i~~---~-~i~~~I~p~KDV--DGl~ 121 (282)
T PRK14166 52 AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDH----ICK---D-LILESIISSKDV--DGFH 121 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCcccCc--ccCC
Confidence 346789999988777763 3566667766 46789999999997532 221 1 122222221100 11
Q ss_pred -----eE-EEEc-----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310 331 -----KL-IGYN-----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 331 -----~l-~G~N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n 398 (409)
++ .|.+ .--.|++.-|+.. +.+++||+++|+|-+. +||.++.-|.+.|+.|+++.
T Consensus 122 ~~N~g~l~~g~~~~~~PcTp~avi~lL~~y-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~ch 188 (282)
T PRK14166 122 PINVGYLNLGLESGFLPCTPLGVMKLLKAY-------------EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCH 188 (282)
T ss_pred hhhhHHHhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 11 1211 1135666655542 3678999999999877 99999999999999999887
Q ss_pred CC
Q 015310 399 ID 400 (409)
Q Consensus 399 R~ 400 (409)
+.
T Consensus 189 s~ 190 (282)
T PRK14166 189 IK 190 (282)
T ss_pred CC
Confidence 53
No 121
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.52 E-value=0.24 Score=48.38 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=77.6
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL 332 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l 332 (409)
....+++|++.....++. +++.+.++.+ .++.+.|+-|-+|.-. ++|+ . +.+.+++.-.=- || +
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~----~id~---~-~i~~~I~p~KDV--DG-l 121 (286)
T PRK14184 53 ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPK----GLDS---Q-RCLELIDPAKDV--DG-F 121 (286)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCC----CCCH---H-HHHhccCcccCc--cc-C
Confidence 346789999988777763 3577777777 4678999999999742 2222 1 122222221100 12 2
Q ss_pred EEEcC-------------cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHh----CCCeE
Q 015310 333 IGYNT-------------DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKS----RGARV 394 (409)
Q Consensus 333 ~G~NT-------------D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~----~G~~i 394 (409)
+-+|. --.|++.-|+.. +.+++||+++|+|-+. +||.++.-|.+ .|+.|
T Consensus 122 ~~~N~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtV 188 (286)
T PRK14184 122 HPENMGRLALGLPGFRPCTPAGVMTLLERY-------------GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATV 188 (286)
T ss_pred CHhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEE
Confidence 22221 124666665542 3678999999999877 99999999988 78888
Q ss_pred EEEeCCh
Q 015310 395 VIFDIDF 401 (409)
Q Consensus 395 ~v~nR~~ 401 (409)
+++..+.
T Consensus 189 t~~hs~t 195 (286)
T PRK14184 189 TVCHSRT 195 (286)
T ss_pred EEEeCCc
Confidence 8886543
No 122
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.45 E-value=0.069 Score=56.97 Aligned_cols=42 Identities=21% Similarity=0.096 Sum_probs=37.5
Q ss_pred CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+|+.++|.|+ ||.|++++..|.+.|++|+++.|+.++++.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l 120 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL 120 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 35789999997 8899999999999999999999999887654
No 123
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.44 E-value=1.5 Score=39.34 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=64.6
Q ss_pred CeeEEEeeccCC----HHHHHHHHHHHHhcCCCEEEEEecCCCCCC--C---hhHHHHHHhc--CCCcEEEEeccCCCCC
Q 015310 10 TTMICAPLMAQS----VEQVLSNMYQAKAEGADVVEIRLDCINNFQ--P---GKDLEIILTK--KPLPVLIVYRPKWAGG 78 (409)
Q Consensus 10 ~~~icv~l~~~~----~~e~~~~~~~~~~~~aD~vElRlD~l~~~~--~---~~~l~~l~~~--~~~PiI~T~R~~~eGG 78 (409)
+..+++-+...+ .++..++++.+.+.|+|.+.+-..+....+ . .+.++.+.+. .++|+++..++...
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-- 125 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-- 125 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC--
Confidence 445567777777 899999999999999999999877653322 1 1334445555 48999999886533
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015310 79 LYEGDEHKRLEALHLAEDLGADYVDFELK 107 (409)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~g~dyvDiEl~ 107 (409)
.+.+.-.++.+.+...|+++|..-..
T Consensus 126 ---~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 126 ---KTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred ---CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 34555556656666778999876554
No 124
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.42 E-value=0.53 Score=45.76 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=87.5
Q ss_pred eeeccCCcccCCHHhHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHH
Q 015310 242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316 (409)
Q Consensus 242 ~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~ 316 (409)
-++|+.-+....=.+-.+..++.|+...+..++. +++...+..+ .++++.|.-|..|.= +++|+ . +.
T Consensus 36 ilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp----~hld~---~-~i 107 (283)
T COG0190 36 ILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLP----KHLDE---Q-KL 107 (283)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCC----CCCCH---H-HH
Confidence 3556443333333456678999999988887753 4677777777 678999999999963 13331 0 11
Q ss_pred hccceEEEEe----C-CCCeEEEEcCc------HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHH
Q 015310 317 IAAVNTIIRR----P-SDGKLIGYNTD------CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALA 384 (409)
Q Consensus 317 igAvNti~~~----~-~~g~l~G~NTD------~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~ 384 (409)
+.++.--.-- + .-|++. .+.. -.|++..|++. +.++.|++++|+|.+. +||-++
T Consensus 108 l~~I~p~KDVDG~hp~N~g~L~-~~~~~~~PCTp~gi~~ll~~~-------------~i~l~Gk~~vVVGrS~iVGkPla 173 (283)
T COG0190 108 LQAIDPEKDVDGFHPYNLGKLA-QGEPGFLPCTPAGIMTLLEEY-------------GIDLRGKNVVVVGRSNIVGKPLA 173 (283)
T ss_pred HhhcCcCCCccccChhHhcchh-cCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHH
Confidence 1111110000 0 002222 1122 36888877653 2678999999999888 999999
Q ss_pred HHHHhCCCeEEEEeCC
Q 015310 385 FGAKSRGARVVIFDID 400 (409)
Q Consensus 385 ~aL~~~G~~i~v~nR~ 400 (409)
.-|...++.|+|+...
T Consensus 174 ~lL~~~naTVtvcHs~ 189 (283)
T COG0190 174 LLLLNANATVTVCHSR 189 (283)
T ss_pred HHHHhCCCEEEEEcCC
Confidence 9999999999998753
No 125
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.41 E-value=0.36 Score=47.41 Aligned_cols=119 Identities=15% Similarity=0.185 Sum_probs=76.6
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
.+.++++|++.....++. +++...++.+ .++...|+-|-+|... ++|+ . +.+.+++--.=- ||
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~ 123 (294)
T PRK14187 54 QRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPN----HIDK---N-LIINTIDPEKDV--DGFH 123 (294)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCcccCc--ccCC
Confidence 456889999988777753 3566666666 4678999999999852 2222 1 112222221100 11
Q ss_pred -----eE-EEEc------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310 331 -----KL-IGYN------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF 397 (409)
Q Consensus 331 -----~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~ 397 (409)
++ .|.+ .--.|++.-|+.. +.+++||+++|+|.+. +|+.++.-|.+.|+.|+++
T Consensus 124 ~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~c 190 (294)
T PRK14187 124 NENVGRLFTGQKKNCLIPCTPKGCLYLIKTI-------------TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTV 190 (294)
T ss_pred hhhHHHHhCCCCCCCccCcCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEe
Confidence 11 1211 1225556655442 3678999999999877 9999999999999999988
Q ss_pred eC
Q 015310 398 DI 399 (409)
Q Consensus 398 nR 399 (409)
..
T Consensus 191 hs 192 (294)
T PRK14187 191 HS 192 (294)
T ss_pred CC
Confidence 75
No 126
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.36 E-value=0.051 Score=55.17 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=32.4
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456789999999999999999999999 99999887
No 127
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.35 E-value=0.19 Score=47.16 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (409)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~ 401 (409)
++|...+++..+.+. +.+++|++++|.|-|.+|+.++..|.++|+ .|.|.+.+.
T Consensus 3 g~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 3 GYGVVVAMKAAMKHL---------GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred hhHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 467777777766532 246889999999999999999999999998 788888765
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.31 E-value=0.082 Score=55.84 Aligned_cols=41 Identities=34% Similarity=0.250 Sum_probs=37.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+.+|+|+|+|.+|.+++..+..+|++|+++++++++.+..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a 204 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV 204 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47899999999999999999999999999999998876643
No 129
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.28 E-value=0.29 Score=48.09 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=75.7
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
.+.++++|++.....++. +++...++.+ .++.+.|+-|-+|.... +|+ . +.+.+++--. + =||
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~----i~~---~-~i~~~I~p~K-D-VDGl~ 122 (297)
T PRK14167 53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDH----VDD---R-EVLRRIDPAK-D-VDGFH 122 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCC----CCH---H-HHHhccCccc-C-cccCC
Confidence 457899999998877764 3577777777 56789999999997532 221 1 1111222111 0 011
Q ss_pred -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhC----CCeEE
Q 015310 331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSR----GARVV 395 (409)
Q Consensus 331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~----G~~i~ 395 (409)
++ .|.+ .--.|++.-|+.. +.+++||+|+|+|.+. .||.++.-|.+. ++.|+
T Consensus 123 ~~n~g~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt 189 (297)
T PRK14167 123 PENVGRLVAGDARFKPCTPHGIQKLLAAA-------------GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT 189 (297)
T ss_pred hhhhHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE
Confidence 11 1111 1225566665542 3678999999999877 999999998887 67888
Q ss_pred EEeC
Q 015310 396 IFDI 399 (409)
Q Consensus 396 v~nR 399 (409)
++..
T Consensus 190 vchs 193 (297)
T PRK14167 190 VCHS 193 (297)
T ss_pred EeCC
Confidence 8753
No 130
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.28 E-value=0.42 Score=46.74 Aligned_cols=120 Identities=18% Similarity=0.308 Sum_probs=76.3
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++.....++. +++.+.++.+ .++.+.|+-|-+|... ++|+ . +.+.+++--.=- ||
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~----~id~---~-~i~~~I~p~KDV--DGl~ 123 (284)
T PRK14193 54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPK----HLDE---N-AVLERIDPAKDA--DGLH 123 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhcCCcccCc--cCCC
Confidence 456889999988777763 3566667777 4678999999999852 2221 1 122222221100 11
Q ss_pred -----eE-EEE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHh--CCCeEEEE
Q 015310 331 -----KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKS--RGARVVIF 397 (409)
Q Consensus 331 -----~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~--~G~~i~v~ 397 (409)
++ .|. -.--.|++.-|+.. +.+++||+++|+|.+. .|+.++.-|.+ .|+.|+++
T Consensus 124 ~~n~g~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvc 190 (284)
T PRK14193 124 PTNLGRLVLNEPAPLPCTPRGIVHLLRRY-------------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLC 190 (284)
T ss_pred hhhhhHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEe
Confidence 11 111 11225566655432 3678999999999877 99999999988 67889988
Q ss_pred eCC
Q 015310 398 DID 400 (409)
Q Consensus 398 nR~ 400 (409)
...
T Consensus 191 hs~ 193 (284)
T PRK14193 191 HTG 193 (284)
T ss_pred CCC
Confidence 753
No 131
>PRK08223 hypothetical protein; Validated
Probab=94.27 E-value=0.052 Score=53.10 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++.+|+|+|+||.|..++..|+..|+ +|+|++.|
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 557899999999999999999999999 99999876
No 132
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=94.26 E-value=1.4 Score=40.16 Aligned_cols=106 Identities=24% Similarity=0.207 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHH---HHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE---IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~---~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
++....++.+.+.|+++|.+|.--+.+.+..+.+. .+.+..+.|+++.- + .+.+.+.|+
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~---------------~---~~la~~~g~ 74 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVND---------------R---VDLALALGA 74 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC---------------H---HHHHHHcCC
Confidence 34666778888899999999964332211111222 22234578888852 1 245667888
Q ss_pred cEEEEeccCc-cchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 100 DYVDFELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 100 dyvDiEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
+.|=+..... ....+. ....+..+-+|.|+. +++ .++.+.|+|++++
T Consensus 75 ~GvHl~~~~~~~~~~r~---~~~~~~~ig~s~h~~------~e~----~~a~~~g~dyi~~ 122 (196)
T TIGR00693 75 DGVHLGQDDLPASEARA---LLGPDKIIGVSTHNL------EEL----AEAEAEGADYIGF 122 (196)
T ss_pred CEEecCcccCCHHHHHH---hcCCCCEEEEeCCCH------HHH----HHHhHcCCCEEEE
Confidence 8776643322 222222 223566889999963 333 3456689999997
No 133
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=94.23 E-value=2.2 Score=41.26 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=74.5
Q ss_pred EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhcCCCc-EEEEe
Q 015310 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKKPLP-VLIVY 71 (409)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~P-iI~T~ 71 (409)
-++.-.++.+...+-++...+.|||++|+-+-+-++..+. +.++++++..+.| ++.|+
T Consensus 20 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y 99 (263)
T CHL00200 20 FITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTY 99 (263)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence 3566678999988888888889999999999877655331 2233344345667 44554
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015310 72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA 151 (409)
Q Consensus 72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~ 151 (409)
-+.- +.... -++++.+.+.|+|.|= .||. +.+|..+.++.+++
T Consensus 100 ~N~i----~~~G~---e~F~~~~~~aGvdgvi--------------------------ipDL----P~ee~~~~~~~~~~ 142 (263)
T CHL00200 100 YNPV----LHYGI---NKFIKKISQAGVKGLI--------------------------IPDL----PYEESDYLISVCNL 142 (263)
T ss_pred ccHH----HHhCH---HHHHHHHHHcCCeEEE--------------------------ecCC----CHHHHHHHHHHHHH
Confidence 3210 00011 2234455555544322 2442 23677788888888
Q ss_pred cCCCEEEEEeecCCHhHHHHHHHH
Q 015310 152 TGADIIKLVFSVNDITEIARIFQL 175 (409)
Q Consensus 152 ~gaDivKia~~~~~~~D~~~ll~~ 175 (409)
.|-+.+=++....+.+....+.+.
T Consensus 143 ~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 143 YNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHh
Confidence 888777766555555555555544
No 134
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.22 E-value=0.28 Score=48.23 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=76.0
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++..-..++. +++.+.++.+ .++.+.|+-|-.|.-..+ |+ . +.+.+++.-.=- ||
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i----~~---~-~i~~~I~p~KDV--DGl~ 123 (297)
T PRK14186 54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHL----DE---V-PLLHAIDPDKDA--DGLH 123 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC----CH---H-HHHhccCcccCc--ccCC
Confidence 446889999987666643 3677777777 467799999999974222 21 1 122222221100 11
Q ss_pred -----eE-EEE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310 331 -----KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 331 -----~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR 399 (409)
++ .|. -.--.|++.-|+.. +.+++||+|+|+|-+. +||.++.-|.+.|+.|+++..
T Consensus 124 ~~n~g~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs 190 (297)
T PRK14186 124 PLNLGRLVKGEPGLRSCTPAGVMRLLRSQ-------------QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHS 190 (297)
T ss_pred hhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence 11 111 11235666665542 3678999999999877 999999999999999988853
No 135
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=94.22 E-value=0.07 Score=52.29 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=37.3
Q ss_pred CCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
|+=++|-|| .|.||+-+..|++.|.+|++++||++|.+.++
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~ 90 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVA 90 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 466888897 67999999999999999999999999998876
No 136
>PRK06720 hypothetical protein; Provisional
Probab=94.19 E-value=0.11 Score=46.72 Aligned_cols=42 Identities=36% Similarity=0.551 Sum_probs=36.4
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.++++.++|.|+ ||.|++++..|.+.|++|++++|+.+.+++
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~ 55 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQA 55 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 467899999997 569999999999999999999999776544
No 137
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.16 E-value=0.098 Score=46.90 Aligned_cols=42 Identities=36% Similarity=0.326 Sum_probs=34.9
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
+...+++|+|+|-+|+.++..+..+|+++++++...++.+++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~ 59 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL 59 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence 445789999999999999999999999999999988776653
No 138
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.08 E-value=4 Score=44.14 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEE----EecC-C--CCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEI----RLDC-I--NNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vEl----RlD~-l--~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+.+|++.-++...+.|.+.+|. .+|- + ...++.+.+..+++. .+.|+-.-+|..+==|..+.+++-..+.++
T Consensus 25 ~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~ 104 (593)
T PRK14040 25 RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE 104 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence 4566666666667789999998 3552 2 122455667777654 367777667754444545556677778899
Q ss_pred HHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEE--EEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--
Q 015310 93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRF--IVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN-- 164 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~-- 164 (409)
.+.+.|++.+-|=....+ .....+..+++.+..+ -++|-. .| +.+.+.+..+++.+.|||.+-|+=|.-
T Consensus 105 ~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~---~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l 181 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT---SPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLL 181 (593)
T ss_pred HHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee---CCccCHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 999999999888644432 2222222344445443 344421 23 346789999999999999998886654
Q ss_pred CHhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310 165 DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (409)
Q Consensus 165 ~~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~ 230 (409)
++.++.++.+.+.+. +.|+=.= +.--++..+=+..-.-|....=+++.. +--.||++++++...++
T Consensus 182 ~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~ 251 (593)
T PRK14040 182 KPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVATLE 251 (593)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHHHHHHHH
Confidence 577888777776432 4453211 112222233333333343333233222 12248888887776665
No 139
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.04 E-value=0.24 Score=46.84 Aligned_cols=52 Identities=31% Similarity=0.352 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeC
Q 015310 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI 399 (409)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR 399 (409)
++|...+++..+... +..+++++++|.|.|.+|+.++..|.+.|++|+ |.+.
T Consensus 11 g~Gv~~~~~~~~~~~---------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 11 GRGVAYATREALKKL---------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred hHHHHHHHHHHHHhc---------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 468888887766532 245789999999999999999999999999766 8777
No 140
>PRK06153 hypothetical protein; Provisional
Probab=94.03 E-value=0.052 Score=55.05 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++++|+|+|+||+|..++..|++.|+ +|++++-+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 356789999999999999999999999 99998755
No 141
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.98 E-value=0.069 Score=49.40 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++.+|+|+|+||.|..++..|...|+ +|++++.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 346789999999999999999999999 89999876
No 142
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.96 E-value=0.087 Score=39.97 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=26.2
Q ss_pred EEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 373 LAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 373 vlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
|||+|-+|.++++.|.+.|.+|+|+.|+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999864
No 143
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.93 E-value=0.35 Score=47.26 Aligned_cols=120 Identities=20% Similarity=0.273 Sum_probs=77.7
Q ss_pred HHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC-
Q 015310 257 HNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG- 330 (409)
Q Consensus 257 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g- 330 (409)
-...++++|++.....++. +++.+.++.+ .++++.|+-|-.|.-. ++|+ . +...+++--.=- ||
T Consensus 47 k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~----~i~~---~-~i~~~I~p~KDV--DGl 116 (287)
T PRK14181 47 KVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPK----HLDA---Q-AILQAISPDKDV--DGL 116 (287)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CcCH---H-HHHhccCcccCc--ccC
Confidence 3456889999988777754 3677777777 5678999999999752 2222 1 122222221100 11
Q ss_pred ------eEE-EE-----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhC----CCe
Q 015310 331 ------KLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSR----GAR 393 (409)
Q Consensus 331 ------~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~----G~~ 393 (409)
+++ |. -.--.|++.-|+.. +.+++||+++|+|-+. +||.++.-|.+. ++.
T Consensus 117 ~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~At 183 (287)
T PRK14181 117 HPVNMGKLLLGETDGFIPCTPAGIIELLKYY-------------EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNAT 183 (287)
T ss_pred ChhhHHHHhcCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCE
Confidence 111 21 01125666665542 3679999999999877 999999999988 678
Q ss_pred EEEEeC
Q 015310 394 VVIFDI 399 (409)
Q Consensus 394 i~v~nR 399 (409)
|+++..
T Consensus 184 Vtvchs 189 (287)
T PRK14181 184 VTLLHS 189 (287)
T ss_pred EEEeCC
Confidence 999874
No 144
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.91 E-value=0.3 Score=48.01 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=59.3
Q ss_pred CeeEEEeeccCCHHHHHHHHHHHHhcC-CCEEEEEecC----------CCCCCC-hhHHHHHHhcCCCcEEEEeccCCCC
Q 015310 10 TTMICAPLMAQSVEQVLSNMYQAKAEG-ADVVEIRLDC----------INNFQP-GKDLEIILTKKPLPVLIVYRPKWAG 77 (409)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~-aD~vElRlD~----------l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eG 77 (409)
.| +.++|.+.+.+++.+.++++.+.| +|.||+=+=+ ..+.+. .+.++.+++..++|+.+-++..
T Consensus 92 ~p-~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~--- 167 (301)
T PRK07259 92 TP-IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN--- 167 (301)
T ss_pred Cc-EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC---
Confidence 44 569999999999999999988888 9999995421 111100 1233344444589999888731
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310 78 GLYEGDEHKRLEALHLAEDLGADYVDF 104 (409)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~dyvDi 104 (409)
.++..++.+.+.+.|+|+|++
T Consensus 168 ------~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 168 ------VTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred ------chhHHHHHHHHHHcCCCEEEE
Confidence 235667778888899999876
No 145
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.91 E-value=7.5 Score=39.50 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=106.8
Q ss_pred HHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccCcc------chH---HHHHhccC---C
Q 015310 56 LEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVAS------NIL---GKQYSSHQ---S 122 (409)
Q Consensus 56 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv-DiEl~~~~------~~~---~~l~~~~~---~ 122 (409)
+.+++...+.|++.|.=. .++| .+.++..++++..++.|+|.| |.|..... +.+ .+.+.... +
T Consensus 121 ~R~~~gv~~rPli~Ti~k-p~~g---ld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG 196 (367)
T cd08205 121 LRRLLGVHDRPLLGTIIK-PSIG---LSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETG 196 (367)
T ss_pred HHHHhCCCCCCeeeeeeC-CCCC---CCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhC
Confidence 334444458899999664 3455 478899999999999999987 77754432 111 22221111 2
Q ss_pred CcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEE---------------EEE
Q 015310 123 GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPII---------------AYS 187 (409)
Q Consensus 123 ~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i---------------~~~ 187 (409)
+.++++..- |-+.+|+.++.+.+++.|||.+=+.....-......+.+. .+.|+. .++
T Consensus 197 ~~~~y~~ni----t~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~---~~lpi~~H~a~~ga~~~~~~~g~~ 269 (367)
T cd08205 197 RKTLYAPNI----TGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAED---PDLPIMAHPAFAGALSRSPDYGSH 269 (367)
T ss_pred CcceEEEEc----CCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhc---CCCeEEEccCcccccccCCCCcCC
Confidence 333333322 3335899999999999999998888776665555444432 233433 333
Q ss_pred cCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhh--ccccccceEEeeeccCCcccCCHHhHHHHHHhcC
Q 015310 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV--EHINADTKVFGLISKPVGHSKGPILHNPTFRHVN 265 (409)
Q Consensus 188 MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~--~~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~g 265 (409)
|=-+|++.|+.+- +.+.|..... .-+ .+.+++.++.+. ..+..-+..+-+. +-...|......++.+|
T Consensus 270 ~~~~~kl~RlaGa---d~~~~~~~~g-k~~--~~~~~~~~la~~~~~~~~~iK~~~Pv~----sgG~~~~~v~~l~~~~G 339 (367)
T cd08205 270 FLLLGKLMRLAGA---DAVIFPGPGG-RFP--FSREECLAIARACRRPLGGIKPALPVP----SGGMHPGRVPELYRDYG 339 (367)
T ss_pred HHHHHHHHHHcCC---CccccCCCcc-CcC--CCHHHHHHHHHHHhCccccCCCceeec----cCCCCHHHHHHHHHHhC
Confidence 3345667777643 2233332211 111 245555554432 1111111112111 11356666677777888
Q ss_pred CCceEe
Q 015310 266 YNGIYV 271 (409)
Q Consensus 266 l~~~y~ 271 (409)
-|..+.
T Consensus 340 ~dv~~~ 345 (367)
T cd08205 340 PDVILL 345 (367)
T ss_pred CcEEEE
Confidence 554443
No 146
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.90 E-value=0.084 Score=47.92 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=32.4
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
..+++|+|+|+|+|-+|--++..|.+.|.+|+++-|++.+
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 3567899999999999999999999999999999998753
No 147
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.88 E-value=0.12 Score=40.18 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=29.8
Q ss_pred EEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
+++|+|+|-.|--++..|.++|.+|+++.|..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 58999999999999999999999999999874
No 148
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.71 E-value=4.7 Score=39.00 Aligned_cols=197 Identities=17% Similarity=0.127 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCC--------CCChhHHHHHHhcC--CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINN--------FQPGKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~--------~~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~l 90 (409)
+.++.++-++.+.+.|.|.||.=.=.-.+ +.+.+.++++++.. +.++..-+|... .+ .+.
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~----~~~ 87 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN------DD----IDL 87 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC------CC----HHH
Confidence 34555555556667899999987422111 11234566665432 678888887653 11 235
Q ss_pred HHHHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015310 91 LHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DI 166 (409)
Q Consensus 91 l~~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~ 166 (409)
++.+.+.|++.|-|-..... +..+-+..+++.+.++.++.=+...+ +.+.+.+.++++.+.|+|.+-++=+.- ++
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGY-SDEELLELLELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCC-CHHHHHHHHHHHHhCCCCEEEEecCCCCCCH
Confidence 66777888998777654332 22222224556778888776663344 367899999999999999988874443 58
Q ss_pred hHHHHHHHHhccC-C--CCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 167 TEIARIFQLLSHC-Q--VPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 167 ~D~~~ll~~~~~~-~--~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
+++.++.+.+.+. + .|+=. ++|+..-.+. .-..|..+.-+++.. +-..|.++.+++...++.
T Consensus 167 ~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~la---A~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~ 237 (266)
T cd07944 167 EDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLE---AIELGVEIIDATVYGMGRGAGNLPTELLLDYLNN 237 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHH---HHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHH
Confidence 8888888876543 3 44421 1222222222 222343333333322 235788999888766643
No 149
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.68 E-value=0.44 Score=44.54 Aligned_cols=88 Identities=22% Similarity=0.352 Sum_probs=60.3
Q ss_pred eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCC---------C---CCC---hhHHHHHHhcCCCcEEEEeccCC
Q 015310 11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN---------N---FQP---GKDLEIILTKKPLPVLIVYRPKW 75 (409)
Q Consensus 11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~---------~---~~~---~~~l~~l~~~~~~PiI~T~R~~~ 75 (409)
..+.+.|.+.+.+++.+.++.+.+.|+|.||+-+-+-. . .++ .+.++.+++....|+.+-+|..+
T Consensus 55 ~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~ 134 (231)
T cd02801 55 RPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW 134 (231)
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc
Confidence 33568999999999999999988889999999765411 0 011 13344454445678877777432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310 76 AGGLYEGDEHKRLEALHLAEDLGADYVDF 104 (409)
Q Consensus 76 eGG~~~~~~~~~~~ll~~~~~~g~dyvDi 104 (409)
+ . +++..++.+.+.+.|+++|.|
T Consensus 135 ~-----~-~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 135 D-----D-EEETLELAKALEDAGASALTV 157 (231)
T ss_pred C-----C-chHHHHHHHHHHHhCCCEEEE
Confidence 2 1 146677777888889999876
No 150
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.63 E-value=0.08 Score=48.91 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++++|+|+|+||.|..++..|...|+ +|++++.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 456789999999999999999999999 89999865
No 151
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=93.62 E-value=1.6 Score=39.17 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHh---cCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT---KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
.++.+.++++.+.|+|.|++|.--.......+.+..+++ ..+.++++. ++ ++.+.+.|+
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---------------~~---~~~a~~~g~ 73 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN---------------DR---VDLALAVGA 73 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe---------------Ch---HHHHHHcCC
Confidence 456667777778899999999753322111122333332 236677753 12 345678899
Q ss_pred cEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 100 dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
+.+-++..... ...+...++.+.++-+|.|+ + ++ ..++.+.|+|++.+
T Consensus 74 ~~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t----~--~~----~~~~~~~g~d~i~~ 121 (196)
T cd00564 74 DGVHLGQDDLP--VAEARALLGPDLIIGVSTHS----L--EE----ALRAEELGADYVGF 121 (196)
T ss_pred CEEecCcccCC--HHHHHHHcCCCCEEEeeCCC----H--HH----HHHHhhcCCCEEEE
Confidence 99988764322 12222333457788888873 2 23 34566779999976
No 152
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.49 E-value=0.66 Score=45.55 Aligned_cols=119 Identities=15% Similarity=0.248 Sum_probs=74.7
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
...++++|++.....++- +++.+.++.+ .++.+.|+-|-.|... ++|+ . +.+.+++--.=- ||
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~ 122 (293)
T PRK14185 53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPK----HISE---Q-KVIEAIDYRKDV--DGFH 122 (293)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CCCH---H-HHHhccCcccCc--CCCC
Confidence 457899999987766653 3566666667 5678999999999752 2221 1 112222211100 11
Q ss_pred -----eEE-EE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhC----CCeEE
Q 015310 331 -----KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSR----GARVV 395 (409)
Q Consensus 331 -----~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~----G~~i~ 395 (409)
++. |. -.--.|++.-|+.. +.+++||+++|+|.+. +||.++.-|.+. ++.|+
T Consensus 123 ~~N~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt 189 (293)
T PRK14185 123 PINVGRMSIGLPCFVSATPNGILELLKRY-------------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT 189 (293)
T ss_pred HhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE
Confidence 111 11 11225666665542 3678999999999877 999999999887 57899
Q ss_pred EEeC
Q 015310 396 IFDI 399 (409)
Q Consensus 396 v~nR 399 (409)
++..
T Consensus 190 vchs 193 (293)
T PRK14185 190 VCHS 193 (293)
T ss_pred EecC
Confidence 8853
No 153
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.48 E-value=7.6 Score=37.38 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=30.3
Q ss_pred EeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC
Q 015310 15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP 52 (409)
Q Consensus 15 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~ 52 (409)
++.-.++.+...+.++...+.|||++|+-+-+-++..+
T Consensus 16 ~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aD 53 (256)
T TIGR00262 16 VTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLAD 53 (256)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCc
Confidence 45567888888888888888999999999987665543
No 154
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.33 E-value=0.57 Score=46.89 Aligned_cols=119 Identities=14% Similarity=0.222 Sum_probs=76.2
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++..-..++. +++.+.++.+ .++.+.|+-|-.|... ++|+ . +.+.+++--.=- ||
T Consensus 108 ~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~----hid~---~-~i~~~I~p~KDV--DGl~ 177 (345)
T PLN02897 108 IKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQ----HLDE---S-KILNMVRLEKDV--DGFH 177 (345)
T ss_pred HHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCcccCc--cCCC
Confidence 346789999987766654 3577777777 5678999999999852 2222 1 122222221100 12
Q ss_pred -----eE-EEEc------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310 331 -----KL-IGYN------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF 397 (409)
Q Consensus 331 -----~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~ 397 (409)
++ .|.+ .--.|++.-|+.. +.+++||+++|+|-+. +|+.++.-|.+.|+.|+++
T Consensus 178 p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-------------~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTic 244 (345)
T PLN02897 178 PLNVGNLAMRGREPLFVSCTPKGCVELLIRS-------------GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTV 244 (345)
T ss_pred HHHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEE
Confidence 12 1111 1125666665432 3678999999999776 9999999999999998888
Q ss_pred eC
Q 015310 398 DI 399 (409)
Q Consensus 398 nR 399 (409)
..
T Consensus 245 Hs 246 (345)
T PLN02897 245 HA 246 (345)
T ss_pred cC
Confidence 64
No 155
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.24 E-value=2.9 Score=42.58 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL 97 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 97 (409)
+.++.++-++...+.|+|.+|.=. ....+ .+.+..+.+.. +..++.-.|.. .+-++.+++.
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G~---p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~a~~~ 87 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAGF---PAVSEDEKEAIKAIAKLGLNASILALNRAV-------------KSDIDASIDC 87 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeC---CCcChHHHHHHHHHHhcCCCeEEEEEcccC-------------HHHHHHHHhC
Confidence 345555556666678999999853 22222 23444554322 32233333321 1226677888
Q ss_pred CCcEEEEeccCccc---------------hHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310 98 GADYVDFELKVASN---------------ILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (409)
Q Consensus 98 g~dyvDiEl~~~~~---------------~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~ 161 (409)
|++.|.+=+...+. ...+.+ .++..+.++.++.=|...++ .+.+.++++.+.+.|+|.+-++=
T Consensus 88 g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~-~~~l~~~~~~~~~~Ga~~I~l~D 166 (378)
T PRK11858 88 GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTD-LDFLIEFAKAAEEAGADRVRFCD 166 (378)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCC-HHHHHHHHHHHHhCCCCEEEEec
Confidence 99999987765441 112222 35567788888866655554 67899999999999999988874
Q ss_pred ecC--CHhHHHHHHHHhccC-CCCEEEEEcCccchh--hhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310 162 SVN--DITEIARIFQLLSHC-QVPIIAYSVGERGLV--SQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (409)
Q Consensus 162 ~~~--~~~D~~~ll~~~~~~-~~p~i~~~MG~~G~~--SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~ 230 (409)
+.- ++.++.++++.+.+. +.|+-.=+=-..|.- .=+..-.-|....-+++.. +-..|+.+++++...++
T Consensus 167 T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 167 TVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHHHHHH
Confidence 433 577887777765432 444332222222211 1111122333333233322 23467777777766554
No 156
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.24 E-value=1.6 Score=39.98 Aligned_cols=110 Identities=14% Similarity=0.200 Sum_probs=65.3
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEec---CCCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLD---CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR 87 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD---~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (409)
+|.++|..-+..++.+.++.+...|+|++++|+= +...... .+.++.+++..+.|+.+.+-.. +..+
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--------d~~~- 71 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--------NPER- 71 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC--------CHHH-
Confidence 3667888899999999999999999999999852 1222111 1355666654456664444322 2223
Q ss_pred HHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccC
Q 015310 88 LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNL 132 (409)
Q Consensus 88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~ 132 (409)
.++.+.+.|+|+|=|=....+.....+...++.+.+++++.|.
T Consensus 72 --~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~ 114 (211)
T cd00429 72 --YIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNP 114 (211)
T ss_pred --HHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecC
Confidence 3555668889985332222122222222334567888888863
No 157
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.22 E-value=0.094 Score=53.67 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=31.8
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 346789999999999999999999999 99999876
No 158
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.20 E-value=0.15 Score=50.98 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
..+.||++.|+|.|.+|++++..|...|++|++++|+...
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 185 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP 185 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 4578999999999999999999999999999999997543
No 159
>PLN02928 oxidoreductase family protein
Probab=93.19 E-value=0.14 Score=51.46 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=34.5
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+.||++.|+|.|.+|++++..|..+|++|+.++|+.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~ 192 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSW 192 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC
Confidence 5789999999999999999999999999999999973
No 160
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.19 E-value=0.11 Score=56.79 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=32.6
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++|+|||+|.+|.++++.|.++|.+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57899999999999999999999999999998863
No 161
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=93.17 E-value=0.81 Score=43.26 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=82.9
Q ss_pred eeEEEeeccC----CHHHH-----HHHHHHHHhcCCCEEEEEecC---CCCCCC--hhHHHHHHh---cCCCcEEEEecc
Q 015310 11 TMICAPLMAQ----SVEQV-----LSNMYQAKAEGADVVEIRLDC---INNFQP--GKDLEIILT---KKPLPVLIVYRP 73 (409)
Q Consensus 11 ~~icv~l~~~----~~~e~-----~~~~~~~~~~~aD~vElRlD~---l~~~~~--~~~l~~l~~---~~~~PiI~T~R~ 73 (409)
+++|+.+.++ ..+.- ..+++++.+.|||.|.+=+++ ..+... .+++.++.+ ...+|+|+-.-.
T Consensus 55 ~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l 134 (236)
T PF01791_consen 55 VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL 134 (236)
T ss_dssp SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE
T ss_pred cccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 4677777665 34555 688999999999999999998 332211 133444443 457888877544
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc-------CccchHHHHHhc--cCCCcEEEEeccCCCCCCCHhHHHH
Q 015310 74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK-------VASNILGKQYSS--HQSGTRFIVSCNLDCETPSEEDLGY 144 (409)
Q Consensus 74 ~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~-------~~~~~~~~l~~~--~~~~~kiI~S~H~f~~tp~~~~l~~ 144 (409)
..+.-.-+..++.-....+.+.++|+|+|=.+.- ...+.++++... .+++++|++| +-++.+++..
T Consensus 135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s-----GGi~~~~~~~ 209 (236)
T PF01791_consen 135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS-----GGIDAEDFLR 209 (236)
T ss_dssp CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE-----SSSSHHHHHH
T ss_pred CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe-----CCCChHHHHH
Confidence 3221110112233455667788999999999887 223344444421 1256778888 3445566655
Q ss_pred HHHHHH---HcCCCEE
Q 015310 145 LVSRMQ---ATGADII 157 (409)
Q Consensus 145 ~~~~~~---~~gaDiv 157 (409)
.++.+. +.|||..
T Consensus 210 ~l~~a~~~i~aGa~~~ 225 (236)
T PF01791_consen 210 TLEDALEFIEAGADRI 225 (236)
T ss_dssp SHHHHHHHHHTTHSEE
T ss_pred HHHHHHHHHHcCChhH
Confidence 555555 7887653
No 162
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=93.12 E-value=0.18 Score=51.82 Aligned_cols=41 Identities=29% Similarity=0.467 Sum_probs=36.0
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSL 405 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~ 405 (409)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~ 216 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT 216 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 457899999997 88999999999999999999999876654
No 163
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=93.12 E-value=1.1 Score=45.85 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=90.8
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR 87 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (409)
+.|+++|.|-.++.++.++-++++...+.+++|+=.-++..... +.++.+++. .+.|+.+.+.... ...+
T Consensus 171 ~~p~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~-~iVk~Lr~~~~~~~I~~DLK~~D--------i~~~ 241 (391)
T PRK13307 171 DPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGL-EVISKIREVRPDAFIVADLKTLD--------TGNL 241 (391)
T ss_pred ccceEEEecCCCCHHHHHHHHHhcccccceEEEECHHHHHHhCH-HHHHHHHHhCCCCeEEEEecccC--------hhhH
Confidence 46999999999999999988887644446888988888766543 356777765 5789999987642 2233
Q ss_pred HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEE-eccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310 88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIV-SCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (409)
Q Consensus 88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~-S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia 160 (409)
. .+.+.+.|+|++-+=.....+.+.+.+ .+++.|.++++ ..|. .|| .+.++.+ ..+.|++-+-
T Consensus 242 v--v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp--~tp-----~e~i~~l-~~~vD~Vllh 306 (391)
T PRK13307 242 E--ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNV--EDP-----VKLLESL-KVKPDVVELH 306 (391)
T ss_pred H--HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCC--CCH-----HHHHHHh-hCCCCEEEEc
Confidence 2 667788999999987766554444444 45667888888 6653 232 2233333 4577887655
No 164
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.12 E-value=0.35 Score=46.51 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEe
Q 015310 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFD 398 (409)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~n 398 (409)
++|...+++..+... +.+++|++++|.|-|.+|+.++..|.++|++|+ |.+
T Consensus 18 g~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDR---------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 577788887766532 257889999999999999999999999999765 766
No 165
>PRK06484 short chain dehydrogenase; Validated
Probab=93.11 E-value=0.17 Score=53.16 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=38.4
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
...+|.++|.|+ ||.|++++..|.+.|++|++++|+.++.++++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 310 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLA 310 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 346899999995 88999999999999999999999988877653
No 166
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.11 E-value=0.1 Score=56.11 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=32.0
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++.+|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 457899999999999999999999999 99999864
No 167
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.10 E-value=0.3 Score=50.65 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEE-Ee
Q 015310 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI-FD 398 (409)
Q Consensus 338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v-~n 398 (409)
-++|...+++..+.+. +.+++|++|+|.|.|-+|..++..|.+.|++|+. .+
T Consensus 207 Tg~Gv~~~~~~~~~~~---------g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 207 TGYGNIYFLMEMLKTK---------GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cHHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3578888887776532 2578999999999999999999999999997665 44
No 168
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=93.08 E-value=1.6 Score=41.84 Aligned_cols=152 Identities=16% Similarity=0.230 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHHHcC
Q 015310 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPK-WAGGLYEGDEHKRLEALHLAEDLG 98 (409)
Q Consensus 20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~~g 98 (409)
.+.+++.+-++++.+.++|.|=+---++.. .... ...+.++++++=.. ..|.. .+........+.+++.|
T Consensus 33 ~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~------~~~~-~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 33 KGLVDIRKTVNEVAEGGADAVLLHKGIVRR------GHRG-YGKDVGLIIHLSASTSLSPD--PNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEeCcchhhh------cccc-cCCCCcEEEEEcCCCCCCCC--CCcceeeeeHHHHHHCC
Confidence 355666666777777788888433222111 1111 12477877665111 11111 11223445678899999
Q ss_pred CcEEEEeccCcc----chH---HHHHh-ccCCCcEEEEe-c----cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015310 99 ADYVDFELKVAS----NIL---GKQYS-SHQSGTRFIVS-C----NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND 165 (409)
Q Consensus 99 ~dyvDiEl~~~~----~~~---~~l~~-~~~~~~kiI~S-~----H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~ 165 (409)
++.||+..+... +.+ +++.. .++.+..+|+- + |... .+.+++....+.+.+.|||++|.-..
T Consensus 104 a~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~--~~~~~~~~~~~~a~~~GADyikt~~~--- 178 (258)
T TIGR01949 104 ADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD--RDPELVAHAARLGAELGADIVKTPYT--- 178 (258)
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc--ccHHHHHHHHHHHHHHCCCEEeccCC---
Confidence 999999876321 222 33332 34567777662 2 2222 22345555567778899999997532
Q ss_pred HhHHHHHHHHhccCCCCEEEE
Q 015310 166 ITEIARIFQLLSHCQVPIIAY 186 (409)
Q Consensus 166 ~~D~~~ll~~~~~~~~p~i~~ 186 (409)
.|...+-++......|++++
T Consensus 179 -~~~~~l~~~~~~~~iPVva~ 198 (258)
T TIGR01949 179 -GDIDSFRDVVKGCPAPVVVA 198 (258)
T ss_pred -CCHHHHHHHHHhCCCcEEEe
Confidence 23333333444456787664
No 169
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.07 E-value=0.61 Score=45.88 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=75.9
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCC---
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSD--- 329 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~--- 329 (409)
.+..+++|++..-..++. +++.+.++.+ .++++.|+-|-+|.-. ++|+ . +.+.+++--.=- |
T Consensus 61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~----~id~---~-~i~~~I~p~KDV--DGl~ 130 (299)
T PLN02516 61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPK----HINE---E-KILNEISLEKDV--DGFH 130 (299)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CcCH---H-HHHhccCccccc--CccC
Confidence 346889999987666642 4677777777 5678999999999742 2222 1 122222221100 1
Q ss_pred ----CeEE-EE-c-----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310 330 ----GKLI-GY-N-----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF 397 (409)
Q Consensus 330 ----g~l~-G~-N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~ 397 (409)
|++. |. . .--.|++.-|+.. +.+++||+++|+|-+. +||.++.-|.+.|+.|+++
T Consensus 131 ~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvc 197 (299)
T PLN02516 131 PLNIGKLAMKGREPLFLPCTPKGCLELLSRS-------------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVV 197 (299)
T ss_pred HhhHhhHhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEe
Confidence 1221 11 1 1124555555432 3689999999999877 9999999999999999998
Q ss_pred eC
Q 015310 398 DI 399 (409)
Q Consensus 398 nR 399 (409)
..
T Consensus 198 hs 199 (299)
T PLN02516 198 HS 199 (299)
T ss_pred CC
Confidence 64
No 170
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.05 E-value=0.11 Score=59.12 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..||+|+|||+|.||.++|+.|.+.|.+|+|+.+..
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 358999999999999999999999999999998763
No 171
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.95 E-value=0.6 Score=47.02 Aligned_cols=119 Identities=22% Similarity=0.290 Sum_probs=75.9
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|++..-..++- +++.+.++.+ .++.+.|+-|-+|... ++|+ . +.+.+++--.=- ||
T Consensus 125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~----~id~---~-~i~~aI~P~KDV--DGl~ 194 (364)
T PLN02616 125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPS----HMDE---Q-NILNAVSIEKDV--DGFH 194 (364)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCcccCc--ccCC
Confidence 356889999976555543 2577777777 4578999999999852 2222 1 122222221100 11
Q ss_pred -----eEE-EE-c-----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310 331 -----KLI-GY-N-----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF 397 (409)
Q Consensus 331 -----~l~-G~-N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~ 397 (409)
++. |. + .--.|++.-|+.. +.+++||+|+|+|-+. +||.++.-|.+.|+.|+++
T Consensus 195 p~N~G~L~~g~~~~~f~PCTp~avielL~~y-------------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTic 261 (364)
T PLN02616 195 PLNIGRLAMRGREPLFVPCTPKGCIELLHRY-------------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV 261 (364)
T ss_pred hhhhHHHhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEe
Confidence 121 11 1 1125666666542 3678999999999766 9999999999999999888
Q ss_pred eC
Q 015310 398 DI 399 (409)
Q Consensus 398 nR 399 (409)
..
T Consensus 262 Hs 263 (364)
T PLN02616 262 HS 263 (364)
T ss_pred CC
Confidence 64
No 172
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.91 E-value=0.13 Score=57.97 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=32.5
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..||+|+|+|+|.||-++|+.|++.|++|+|+++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 46899999999999999999999999999999864
No 173
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.90 E-value=7.7 Score=38.91 Aligned_cols=199 Identities=17% Similarity=0.219 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE---------ecC-CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIR---------LDC-INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLE 89 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElR---------lD~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ 89 (409)
+.++.++-++.+.+.|+|.||.= +++ +...++.+.++.++... +.++..-+++. . .. .+
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg----~--~~----~~ 92 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPG----I--GT----VD 92 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccC----c--cc----HH
Confidence 34555666666677899999993 221 12223345566665432 34444445431 1 11 23
Q ss_pred HHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310 90 ALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--D 165 (409)
Q Consensus 90 ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~ 165 (409)
-++.+.+.|++.|-|-....+ +...+.+ .+++.+.++.++.=+. ...+.+++.++.+++.++|+|.+=++=+.- +
T Consensus 93 dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~ 171 (337)
T PRK08195 93 DLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALL 171 (337)
T ss_pred HHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCC
Confidence 368888999999887655443 2223333 4556677776655442 233568899999999999999887774443 5
Q ss_pred HhHHHHHHHHhccC---CCCEEEEE-cCc--cchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 166 ITEIARIFQLLSHC---QVPIIAYS-VGE--RGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 166 ~~D~~~ll~~~~~~---~~p~i~~~-MG~--~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
++|+.++.+.+.+. +.|+ .+- =-. ++...=+..-.-|..+.=+++.. +...|..+++++...++.
T Consensus 172 P~~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~ 243 (337)
T PRK08195 172 PEDVRDRVRALRAALKPDTQV-GFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLDR 243 (337)
T ss_pred HHHHHHHHHHHHHhcCCCCeE-EEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHHh
Confidence 88888888876543 3332 221 001 11112222222333333333322 345788888887766543
No 174
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=92.87 E-value=6.6 Score=36.86 Aligned_cols=199 Identities=18% Similarity=0.245 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
+.++.+.-++...+.|.|.||+=.-...+ ++.+.++.+++.. +.++..-+|. .++.=...++.+...|+
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~g~ 81 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCRA---------NEEDIERAVEAAKEAGI 81 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEES---------CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeeee---------hHHHHHHHHHhhHhccC
Confidence 34555555666667899999998333322 2234555554332 4555555553 23332233566677899
Q ss_pred cEEEEeccCcc---------------chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310 100 DYVDFELKVAS---------------NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (409)
Q Consensus 100 dyvDiEl~~~~---------------~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~ 163 (409)
+.+.+-....+ +...+.+ .++..+.++-++.=+...++ .+++.+.++++.++|+|++-|+=+.
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~i~l~Dt~ 160 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTD-PEELLELAEALAEAGADIIYLADTV 160 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSS-HHHHHHHHHHHHHHT-SEEEEEETT
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccccc-HHHHHHHHHHHHHcCCeEEEeeCcc
Confidence 99999877654 1122223 45667888877765544443 5789999999999999999888443
Q ss_pred C--CHhHHHHHHHHhccC-C-CCEEEEEcCcc--chhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310 164 N--DITEIARIFQLLSHC-Q-VPIIAYSVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (409)
Q Consensus 164 ~--~~~D~~~ll~~~~~~-~-~p~i~~~MG~~--G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~ 230 (409)
- ++.++..+++.+.+. + .|+-.=+=-.. +...=+..-..|..+.=+++.. +-.+|+.+++++...++
T Consensus 161 G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~~L~ 234 (237)
T PF00682_consen 161 GIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLEELVAALE 234 (237)
T ss_dssp S-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHHHHh
Confidence 3 578888888776543 2 33321111111 2222222333344333233322 24589999999887665
No 175
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=92.85 E-value=4.4 Score=37.45 Aligned_cols=111 Identities=15% Similarity=0.228 Sum_probs=65.9
Q ss_pred CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe---cCCCCCC-ChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHH
Q 015310 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL---DCINNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85 (409)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl---D~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~ 85 (409)
+.+|.++|...+...+.++++.+.+.|+|+|++|+ .+.++.. ..+.++.+++..+.|+-+.+-.. +.+
T Consensus 3 ~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--------d~~ 74 (220)
T PRK05581 3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--------NPD 74 (220)
T ss_pred CcEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--------CHH
Confidence 44688999999999999999999999999999986 2222211 13455566544444543333322 344
Q ss_pred HHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEecc
Q 015310 86 KRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 131 (409)
Q Consensus 86 ~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H 131 (409)
++.+ .+.+.|+|+|=+=....+.....+...++.+.+++++.|
T Consensus 75 ~~i~---~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (220)
T PRK05581 75 RYVP---DFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLN 117 (220)
T ss_pred HHHH---HHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEEC
Confidence 4443 445778888444332222222222233456777888775
No 176
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=92.85 E-value=1.3 Score=41.79 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH-----HHHHHHHHHcC
Q 015310 24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR-----LEALHLAEDLG 98 (409)
Q Consensus 24 e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-----~~ll~~~~~~g 98 (409)
|+.+.++++.+.++|.|=+..-++. .........+..+-+.++- ..|.. .-+.. ..-.+.+++.|
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~~~~~~~~~vi~f--p~g~~--~~~~k~~~~~~~~ve~A~~~G 89 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLAGSGVKVGLVIGF--PFGTS--TTEPKGYDQIVAEVEEAIRLG 89 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHSTTSTSEEEEEEST--TTSSS--THHHHTCEEEHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhhccccccceEEEe--CCCCC--ccccccccchHHHHHHHHHcC
Confidence 6777788888889998854433222 2222222222223333332 22322 23344 66678999999
Q ss_pred CcEEEEeccC---cc-------chHHHHH-hccCCCcEEEEeccCCCCCC-----CHhHHHHHHHHHHHcCCCEEEEEee
Q 015310 99 ADYVDFELKV---AS-------NILGKQY-SSHQSGTRFIVSCNLDCETP-----SEEDLGYLVSRMQATGADIIKLVFS 162 (409)
Q Consensus 99 ~dyvDiEl~~---~~-------~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~~l~~~~~~~~~~gaDivKia~~ 162 (409)
+|-||+=++. .. +.++++. ..++.+.++|+= -...+.. +.+.+....+-+.++|||++|..+.
T Consensus 90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG 168 (236)
T ss_dssp -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC
Confidence 9999987666 21 2233444 456788898876 3211000 1123566667778899999999887
Q ss_pred ---cCCHhHHHHHHHHhccCCCC
Q 015310 163 ---VNDITEIARIFQLLSHCQVP 182 (409)
Q Consensus 163 ---~~~~~D~~~ll~~~~~~~~p 182 (409)
..+.+|+..+.++....+.|
T Consensus 169 ~~~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 169 KPVGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp SSSCSHHHHHHHHHHHHHTHSST
T ss_pred ccccccHHHHHHHHHHHHhcCCC
Confidence 44567777777777766666
No 177
>PRK08324 short chain dehydrogenase; Validated
Probab=92.84 E-value=0.2 Score=55.04 Aligned_cols=43 Identities=42% Similarity=0.607 Sum_probs=38.1
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+.||+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~ 462 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAA 462 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHH
Confidence 467899999995 9999999999999999999999998876654
No 178
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.83 E-value=4.1 Score=38.92 Aligned_cols=119 Identities=17% Similarity=0.122 Sum_probs=75.2
Q ss_pred HHHHhcCC-CcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCC
Q 015310 57 EIILTKKP-LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 135 (409)
Q Consensus 57 ~~l~~~~~-~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~ 135 (409)
+.+++..+ .|+|+=. +.|... ++++-.+..++.++.|++.|-||-.. +....+...+..+.-|| -+-+ -
T Consensus 65 ~~I~r~~~~~pviaD~----~~G~g~-~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~Vi-aRtd--~ 134 (240)
T cd06556 65 RAVRRGAPLALIVADL----PFGAYG-APTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVI-AHTG--L 134 (240)
T ss_pred HHHHhhCCCCCEEEeC----CCCCCc-CHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEE-EEeC--C
Confidence 34445454 6999875 556554 55667777888899999999999763 22333333333345333 3223 2
Q ss_pred CC-----------------CHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCc
Q 015310 136 TP-----------------SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE 190 (409)
Q Consensus 136 tp-----------------~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~ 190 (409)
+| ..++++++....++.|||.+=+=.. +.++..++ ....+.|++++++|.
T Consensus 135 ~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~i---~~~~~~P~~~~gag~ 201 (240)
T cd06556 135 TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQI---TEALAIPLAGIGAGS 201 (240)
T ss_pred chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHH---HHhCCCCEEEEecCc
Confidence 22 2456677777788899998877533 55555444 445678999998886
No 179
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=92.81 E-value=14 Score=38.70 Aligned_cols=207 Identities=15% Similarity=0.131 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEE----EecC---CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 015310 22 VEQVLSNMYQAKAEGADVVEI----RLDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93 (409)
Q Consensus 22 ~~e~~~~~~~~~~~~aD~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 93 (409)
.++++.-+...-+.|.+.+|. ..|- +...+|.+.+..+++.. +.|+-.-+|..+==|..+.+++-...+++.
T Consensus 34 t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~ 113 (468)
T PRK12581 34 IEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL 113 (468)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence 466666666666779999999 8882 22335566777777654 677777778444345555566666677999
Q ss_pred HHHcCCcEEEEeccC--ccchHHHHHhccCCCcE--EEEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310 94 AEDLGADYVDFELKV--ASNILGKQYSSHQSGTR--FIVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--D 165 (409)
Q Consensus 94 ~~~~g~dyvDiEl~~--~~~~~~~l~~~~~~~~k--iI~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--~ 165 (409)
+.+.|+|.+=|=-.. .+.....+..+++.|.. +-+||-. .| +.+-+.+..+++.+.|||.+=|+=|.- +
T Consensus 114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~---sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~ 190 (468)
T PRK12581 114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT---SPVHTLNYYLSLVKELVEMGADSICIKDMAGILT 190 (468)
T ss_pred HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe---CCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence 999998876652222 22222222233444444 4455432 45 456688999999999999988886655 5
Q ss_pred HhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 166 ITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 166 ~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
+.++.++.+.+.+. +.|+-.= +.--++..+=+..-.-|....-+++.. +.-.||++.+++...++.
T Consensus 191 P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~ 260 (468)
T PRK12581 191 PKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKE 260 (468)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHh
Confidence 78888888776543 4553211 222233333333333444333333332 122479999998877764
No 180
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=92.79 E-value=1.7 Score=41.98 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHh--cCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHHH
Q 015310 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT--KKPLPVLIVYRPK-WAGGLYEGDEHKRLEALHLAED 96 (409)
Q Consensus 20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~ 96 (409)
.+.+++.+-++++.+.++|.|=+--- .+....+ ..+.|+++++=+. .-|. .+..+....-.+.+++
T Consensus 36 ~~~~d~~~~~~~a~~~~~~av~v~~~---------~~~~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~ve~A~~ 104 (267)
T PRK07226 36 DGLVDIRDTVNKVAEGGADAVLMHKG---------LARHGHRGYGRDVGLIVHLSASTSLSP--DPNDKVLVGTVEEAIK 104 (267)
T ss_pred cCcCCHHHHHHHHHhcCCCEEEeCHh---------HHhhhccccCCCCcEEEEEcCCCCCCC--CCCcceeeecHHHHHH
Confidence 34566666677777778888833211 1222111 2467777765411 1110 1111445555778999
Q ss_pred cCCcEEEEeccCcc----c---hHHHHH-hccCCCcEEEEe-ccC---CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310 97 LGADYVDFELKVAS----N---ILGKQY-SSHQSGTRFIVS-CNL---DCETPSEEDLGYLVSRMQATGADIIKLVFSVN 164 (409)
Q Consensus 97 ~g~dyvDiEl~~~~----~---~~~~l~-~~~~~~~kiI~S-~H~---f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~ 164 (409)
.|++.||+=++... + .++++. ..++.+..+|+- |-+ .+..-+.+++....+.+.+.|||++|.-...
T Consensus 105 ~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~- 183 (267)
T PRK07226 105 LGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG- 183 (267)
T ss_pred cCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC-
Confidence 99999998655422 1 223333 234566776663 221 1222233556666778888999999997432
Q ss_pred CHhHHHHHHHHhccCCCCEEEEE
Q 015310 165 DITEIARIFQLLSHCQVPIIAYS 187 (409)
Q Consensus 165 ~~~D~~~ll~~~~~~~~p~i~~~ 187 (409)
|...+-+.......|+.+.+
T Consensus 184 ---~~~~l~~~~~~~~ipV~a~G 203 (267)
T PRK07226 184 ---DPESFREVVEGCPVPVVIAG 203 (267)
T ss_pred ---CHHHHHHHHHhCCCCEEEEe
Confidence 33223333333467775543
No 181
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=92.78 E-value=0.77 Score=44.88 Aligned_cols=144 Identities=13% Similarity=0.211 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCC----CCCCChhHHHHHH-------hcCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCI----NNFQPGKDLEIIL-------TKKPLPVLIVYRPKWAGGLYEGDEHKRLE 89 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~~~~~l~~l~-------~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ 89 (409)
+.+++++++++..+.|||+|.+=--.- +..+..+++.++. +..+.| +.+ +..+-+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~--ISI------------DT~~~~ 101 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW--ISV------------DTSKPE 101 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEE------------ECCCHH
Confidence 568889999999999999997763222 1122234444432 122333 233 235567
Q ss_pred HHHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCH---------------hHHHHHHHHHHHcC
Q 015310 90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------------EDLGYLVSRMQATG 153 (409)
Q Consensus 90 ll~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------------~~l~~~~~~~~~~g 153 (409)
..+.|++.|+++| ||--...++.++.+ .+.+..+|+-+. .++|.. +.+.+.++.+.+.|
T Consensus 102 va~~AL~~GadiINDI~g~~d~~~~~~~---a~~~~~vVlmh~--~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~G 176 (282)
T PRK11613 102 VIRESAKAGAHIINDIRSLSEPGALEAA---AETGLPVCLMHM--QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAG 176 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHH---HHcCCCEEEEcC--CCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 8899999999998 66322223333322 235677777743 333421 23456677788888
Q ss_pred CCEEEEEe-----ecCCHhHHHHHHHHhcc---CCCCE
Q 015310 154 ADIIKLVF-----SVNDITEIARIFQLLSH---CQVPI 183 (409)
Q Consensus 154 aDivKia~-----~~~~~~D~~~ll~~~~~---~~~p~ 183 (409)
-+==+|+. ..++.++++.+++-+.. .+.|+
T Consensus 177 I~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pi 214 (282)
T PRK11613 177 IAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPL 214 (282)
T ss_pred CChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 53224443 45678888888877543 35674
No 182
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.75 E-value=0.21 Score=54.11 Aligned_cols=43 Identities=35% Similarity=0.505 Sum_probs=38.5
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~ 411 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDEL 411 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 567899999996 8899999999999999999999998887665
No 183
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.74 E-value=0.2 Score=50.05 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
..+.|+++.|+|.|.+|++++..|...|++|+.++|+.++
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~ 181 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNK 181 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 3578999999999999999999999999999999998754
No 184
>PRK07411 hypothetical protein; Validated
Probab=92.73 E-value=0.12 Score=52.78 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=31.9
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
++..+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 446789999999999999999999999 99999876
No 185
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=92.71 E-value=4.3 Score=40.39 Aligned_cols=88 Identities=18% Similarity=0.329 Sum_probs=61.8
Q ss_pred EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----C--------CC---hhHHHHHHhcCCCcEEEEeccCCCC
Q 015310 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----F--------QP---GKDLEIILTKKPLPVLIVYRPKWAG 77 (409)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~--------~~---~~~l~~l~~~~~~PiI~T~R~~~eG 77 (409)
+.+.|.+.+.+++.+.++.+.+.|+|.||+=+-+=.. . ++ .+.+..+++..+.|+.+-+|.
T Consensus 67 ~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~---- 142 (321)
T PRK10415 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT---- 142 (321)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc----
Confidence 4589999999999888887777899999998876210 0 11 122333444568898888884
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 78 GLYEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
| |..+.++..++.+.+.+.|+++|.|.
T Consensus 143 G-~~~~~~~~~~~a~~le~~G~d~i~vh 169 (321)
T PRK10415 143 G-WAPEHRNCVEIAQLAEDCGIQALTIH 169 (321)
T ss_pred c-ccCCcchHHHHHHHHHHhCCCEEEEe
Confidence 3 22344567788888888999999874
No 186
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=92.64 E-value=2.5 Score=40.61 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=83.8
Q ss_pred CeeEEEee--ccCC-----HHHHHHHHHHHHhcCCCEEEEEecCCCCCCChh---HHHHHH---hcCCCcEEEEeccCCC
Q 015310 10 TTMICAPL--MAQS-----VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIIL---TKKPLPVLIVYRPKWA 76 (409)
Q Consensus 10 ~~~icv~l--~~~~-----~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~e 76 (409)
.+.+|+++ .++. ......+++++...|+|.|-+|...... ...+ .+.++. +..+.|+++-.- ..
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~ 146 (258)
T TIGR01949 70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMY--PR 146 (258)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEe--cc
Confidence 45578888 3222 1235566888889999999999875542 1112 233333 345789887322 33
Q ss_pred CCCCC-CCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310 77 GGLYE-GDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD 155 (409)
Q Consensus 77 GG~~~-~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaD 155 (409)
|.... .+.+...+..+.+.+.|+|||=+.+....+.++++... ...+|+++=- -++.+.++..+.+.++.+.||+
T Consensus 147 Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~--~~iPVva~GG--i~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 147 GPHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred CcccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh--CCCcEEEecC--CCCCCHHHHHHHHHHHHHcCCc
Confidence 43221 23344444457778899999998865444556655532 3455655522 1233567888889988999998
No 187
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.62 E-value=7.6 Score=37.52 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHHhcCCCcEEEEe-ccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKKPLPVLIVY-RPKWAGGLYEGDEHKRLEALHLAEDL 97 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~T~-R~~~eGG~~~~~~~~~~~ll~~~~~~ 97 (409)
+.++.++-++.+.+.|.|.||.=- +...+ .+.++.+.+....+-++++ |.. .+ -++.+.+.
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~---------~~----di~~a~~~ 83 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKLGLKAKILTHIRCH---------MD----DARIAVET 83 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC---CCCCHHHHHHHHHHHhCCCCCcEEEEecCC---------HH----HHHHHHHc
Confidence 345555556666778999999863 22222 2233333332222444443 422 11 25667788
Q ss_pred CCcEEEEeccCcc------------chHHH---HH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310 98 GADYVDFELKVAS------------NILGK---QY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (409)
Q Consensus 98 g~dyvDiEl~~~~------------~~~~~---l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~ 161 (409)
|++.|.+-+..++ +.++. .+ .++..+.++-++.=+-.++| .+++.+++++..+.|+|.+-++=
T Consensus 84 g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~D 162 (262)
T cd07948 84 GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGIAD 162 (262)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEECC
Confidence 9999998664332 22222 22 34567788888876655666 57899999999999999877764
Q ss_pred ecC--CHhHHHHHHHHhccC-CCCEEEEE--cCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 162 SVN--DITEIARIFQLLSHC-QVPIIAYS--VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 162 ~~~--~~~D~~~ll~~~~~~-~~p~i~~~--MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
+.- ++.++.++++.+.+. +.|+-.=+ .--+|...=+..-..|..+.=+++.. +--.|..+++++...++.
T Consensus 163 t~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGeraGn~~~e~~~~~l~~ 238 (262)
T cd07948 163 TVGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGERNGITPLGGLIARMYT 238 (262)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHHh
Confidence 433 578888887776543 44442211 11122222222223343333233322 244788899888877653
No 188
>PRK05855 short chain dehydrogenase; Validated
Probab=92.60 E-value=0.23 Score=52.51 Aligned_cols=43 Identities=37% Similarity=0.567 Sum_probs=38.0
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
..++++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 355 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERT 355 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 456789999996 8999999999999999999999998887665
No 189
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=92.53 E-value=0.55 Score=48.78 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeCC
Q 015310 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID 400 (409)
Q Consensus 337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR~ 400 (409)
--++|.+..++..+... +.+++|++|+|-|.|-+|..++..|.++|++|+ |.+.+
T Consensus 215 ATG~Gv~~~~~~~l~~~---------~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKKL---------NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred ccHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 35678888888776532 256899999999999999999999999999755 88776
No 190
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=92.53 E-value=0.26 Score=54.13 Aligned_cols=44 Identities=34% Similarity=0.536 Sum_probs=38.5
Q ss_pred CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.++++|++||.|+ ||.|++++..|.+.|++|++++|+.++++.+
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~ 454 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAV 454 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 4577899999996 8899999999999999999999998776554
No 191
>PLN02591 tryptophan synthase
Probab=92.52 E-value=10 Score=36.38 Aligned_cols=170 Identities=14% Similarity=0.187 Sum_probs=90.4
Q ss_pred EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhcCCCc-EEEEe
Q 015310 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKKPLP-VLIVY 71 (409)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~P-iI~T~ 71 (409)
-++.-.++.+..++.++...+.|||++|+-+-+-+...+. +.++++|+..+.| ++.|+
T Consensus 7 yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y 86 (250)
T PLN02591 7 YITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTY 86 (250)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence 3566778999998888888889999999999876654331 2334445446788 56666
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE---EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHH
Q 015310 72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYV---DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSR 148 (409)
Q Consensus 72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv---DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~ 148 (409)
-+.- +. --.-++++.+.+.|++-+ |+-++..+++.+ ..++.+...|.=. ..|.+.+.+..+.+.
T Consensus 87 ~N~i----~~---~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~---~~~~~gl~~I~lv---~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 87 YNPI----LK---RGIDKFMATIKEAGVHGLVVPDLPLEETEALRA---EAAKNGIELVLLT---TPTTPTERMKAIAEA 153 (250)
T ss_pred ccHH----HH---hHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH---HHHHcCCeEEEEe---CCCCCHHHHHHHHHh
Confidence 4321 11 122356778888887654 443322222222 2344566655422 122223334444444
Q ss_pred HHHcCCCEEEEEeecCC------HhHHHHHHHHhcc-CCCCEEEEEcCcc--chhhhhhcC
Q 015310 149 MQATGADIIKLVFSVND------ITEIARIFQLLSH-CQVPIIAYSVGER--GLVSQLLSP 200 (409)
Q Consensus 149 ~~~~gaDivKia~~~~~------~~D~~~ll~~~~~-~~~p~i~~~MG~~--G~~SRi~~~ 200 (409)
. .| -|+=+..+..+ ..+....++..++ .+.|++. +-|-. -.+.+++..
T Consensus 154 ~--~g-FIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v-GFGI~~~e~v~~~~~~ 210 (250)
T PLN02591 154 S--EG-FVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV-GFGISKPEHAKQIAGW 210 (250)
T ss_pred C--CC-cEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE-eCCCCCHHHHHHHHhc
Confidence 2 22 34433333222 3445554444443 4778653 44443 345555433
No 192
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.50 E-value=0.56 Score=46.13 Aligned_cols=123 Identities=19% Similarity=0.267 Sum_probs=78.0
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
.+.++++|++.....++. +++.+.++.+ .++.+.|+-|-.|... ++|+ .. .+.+++--.=- ||
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id~---~~-i~~~I~p~KDV--DGl~ 122 (295)
T PRK14174 53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QIDE---FA-VTLAIDPAKDV--DGFH 122 (295)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---HH-HHhcCCccccc--cccC
Confidence 456899999998887764 3677777777 5678999999999852 3322 11 11222221100 11
Q ss_pred -----eE-EEE--c----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHh----CCCe
Q 015310 331 -----KL-IGY--N----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKS----RGAR 393 (409)
Q Consensus 331 -----~l-~G~--N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~----~G~~ 393 (409)
++ .|+ + .--.|++.-|+.. +.+++||+|+|+|.+. +||.++.-|.+ .|+.
T Consensus 123 ~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~at 189 (295)
T PRK14174 123 PENLGRLVMGHLDKCFVSCTPYGILELLGRY-------------NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCT 189 (295)
T ss_pred hhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCE
Confidence 11 121 1 1124555555432 3678999999999877 99999988887 5778
Q ss_pred EEEEeCChHH
Q 015310 394 VVIFDIDFEQ 403 (409)
Q Consensus 394 i~v~nR~~~k 403 (409)
|+++..+...
T Consensus 190 Vt~~hs~t~~ 199 (295)
T PRK14174 190 VTICHSATKD 199 (295)
T ss_pred EEEEeCCchh
Confidence 8888765443
No 193
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.49 E-value=0.3 Score=40.34 Aligned_cols=38 Identities=37% Similarity=0.417 Sum_probs=33.0
Q ss_pred EEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 371 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 371 vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
++|+|.|..|+.++..|.+.+.+++++++++++.+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~ 38 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELR 38 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH
Confidence 68999999999999999996669999999999887763
No 194
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.45 E-value=0.24 Score=49.49 Aligned_cols=40 Identities=33% Similarity=0.418 Sum_probs=36.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.|++++|.|+||.|..++..+..+|++|+.++|+.+|.+.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~ 205 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLEL 205 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHH
Confidence 4889999999999999998888899999999999988743
No 195
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=92.27 E-value=7.9 Score=39.19 Aligned_cols=193 Identities=17% Similarity=0.190 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
+.++.++-++...+.|+|.+|.=.-... ..+.+.++.+.+.. +..+..-.|.. . +-++.+.+.|+
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~-~~~~e~i~~i~~~~~~~~v~~~~r~~---------~----~di~~a~~~g~ 85 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGFPIAS-EGEFEAIKKISQEGLNAEICSLARAL---------K----KDIDKAIDCGV 85 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCC-hHHHHHHHHHHhcCCCcEEEEEcccC---------H----HHHHHHHHcCc
Confidence 3445555555666779999997421111 11223444454333 33444444532 1 22667888999
Q ss_pred cEEEEeccCccc------------hHH---HHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310 100 DYVDFELKVASN------------ILG---KQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (409)
Q Consensus 100 dyvDiEl~~~~~------------~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~ 163 (409)
+.|.+-+...+. .++ +.+ .+++.+.++-++.=|...++ .+.+.++++++.+.|+|.+-++=+.
T Consensus 86 ~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~DT~ 164 (363)
T TIGR02090 86 DSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTD-IDFLIKVFKRAEEAGADRINIADTV 164 (363)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCC-HHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 998885554321 122 222 35667888888876655553 6789999999999999998887654
Q ss_pred C--CHhHHHHHHHHhccC-CCCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 164 N--DITEIARIFQLLSHC-QVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 164 ~--~~~D~~~ll~~~~~~-~~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
- ++.++.++.+.+.+. +.|+=. ++|+..-.+.=+ .-|....=+++.. +-..|+.+++++...++.
T Consensus 165 G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~---~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 165 GVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGV---KAGAEQVHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred CccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHH---HCCCCEEEEEeeccccccccccHHHHHHHHHH
Confidence 3 477888777776432 334321 122222222222 2233333333322 246899999988776653
No 196
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.22 E-value=0.28 Score=51.84 Aligned_cols=40 Identities=35% Similarity=0.248 Sum_probs=35.9
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.+.+++|+|+|.+|++++..+..+|+.|++++++.++.+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~ 202 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQ 202 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3579999999999999999999999999999999877554
No 197
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.17 E-value=0.17 Score=57.53 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
.+++|+|||+|.||.++|+.|++.|.+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4689999999999999999999999999999875
No 198
>PRK07985 oxidoreductase; Provisional
Probab=92.13 E-value=0.27 Score=47.89 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~ 400 (409)
.+++|+++|.|+ ||.|++++..|.+.|++|++..|+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence 367899999996 889999999999999998888765
No 199
>PLN02334 ribulose-phosphate 3-epimerase
Probab=92.12 E-value=9.7 Score=35.76 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=80.2
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCC-C---hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCH
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQ-P---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDE 84 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~-~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~ 84 (409)
+.-.|..++...+...+.++++++...|+|++=+|+--..... . .+.++.+++.++.|+-+++-.. ++
T Consensus 6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~--------~p 77 (229)
T PLN02334 6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT--------NP 77 (229)
T ss_pred CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC--------CH
Confidence 3445777877777778888899988889999999765332111 1 1356666665666755565432 35
Q ss_pred HHHHHHHHHHHHcCCcEE--EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcC-CCEE-EEE
Q 015310 85 HKRLEALHLAEDLGADYV--DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATG-ADII-KLV 160 (409)
Q Consensus 85 ~~~~~ll~~~~~~g~dyv--DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~g-aDiv-Kia 160 (409)
+.|++. +.+.|+|+| =+|....+...+.+...++.+.++-+|.|. .|| .+.++...+.| +|.+ =..
T Consensus 78 ~d~~~~---~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~--~t~-----~~~~~~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 78 EDYVPD---FAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNP--GTP-----VEAVEPVVEKGLVDMVLVMS 147 (229)
T ss_pred HHHHHH---HHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECC--CCC-----HHHHHHHHhccCCCEEEEEE
Confidence 566654 477899999 666201111222232334567889899873 244 12233344443 7764 234
Q ss_pred eec
Q 015310 161 FSV 163 (409)
Q Consensus 161 ~~~ 163 (409)
+.|
T Consensus 148 v~p 150 (229)
T PLN02334 148 VEP 150 (229)
T ss_pred Eec
Confidence 444
No 200
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.10 E-value=0.19 Score=57.16 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+|+|+|||+|.+|.++|+.|++.|.+|+|+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecc
Confidence 45789999999999999999999999999999875
No 201
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.09 E-value=0.2 Score=53.74 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=32.1
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..|++|+|+|+|.+|.++++.|.++|++|+|+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 45899999999999999999999999999999864
No 202
>PRK06046 alanine dehydrogenase; Validated
Probab=92.07 E-value=0.26 Score=49.11 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=35.8
Q ss_pred CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la 408 (409)
-+++.|+|+|+.|+..+.++... ++ +|+|++|+.+++++++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~ 171 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFV 171 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHH
Confidence 46899999999999999998754 67 8999999999988765
No 203
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=92.04 E-value=10 Score=35.17 Aligned_cols=109 Identities=24% Similarity=0.245 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCCCC--CChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015310 25 VLSNMYQAKAEGADVVEIRLDCINNF--QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV 102 (409)
Q Consensus 25 ~~~~~~~~~~~~aD~vElRlD~l~~~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv 102 (409)
..+.++.+.+.|||++ |+--++.. ...+.+..+++..++|+++- |+- .+++ .++.+.+.|+|.|
T Consensus 33 ~~~~A~~~~~~GA~~l--~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~------~~i--~~~~----~v~~~~~~Gad~v 98 (217)
T cd00331 33 PVEIAKAYEKAGAAAI--SVLTEPKYFQGSLEDLRAVREAVSLPVLRK------DFI--IDPY----QIYEARAAGADAV 98 (217)
T ss_pred HHHHHHHHHHcCCCEE--EEEeCccccCCCHHHHHHHHHhcCCCEEEC------Cee--cCHH----HHHHHHHcCCCEE
Confidence 5555667777899999 43211211 12345666766678999951 221 2222 3667788999987
Q ss_pred EEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015310 103 DFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (409)
Q Consensus 103 DiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDiv 157 (409)
=+-....+ +.++++. ..+.-+..+++..|+ +++ ++++.++|+|++
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~------~~e----~~~~~~~g~~~i 145 (217)
T cd00331 99 LLIVAALDDEQLKELYELARELGMEVLVEVHD------EEE----LERALALGAKII 145 (217)
T ss_pred EEeeccCCHHHHHHHHHHHHHcCCeEEEEECC------HHH----HHHHHHcCCCEE
Confidence 54322211 3344444 234467888888884 344 455666788887
No 204
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.02 E-value=3.6 Score=39.96 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=56.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc-----------chHHHHHh-ccCC-CcEEEEe
Q 015310 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS-----------NILGKQYS-SHQS-GTRFIVS 129 (409)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~-----------~~~~~l~~-~~~~-~~kiI~S 129 (409)
.+.|+|+.++.. +.+++.+..+.+.+.|+|+|+|-+.++. +.+.+++. .++. +..+++=
T Consensus 97 ~~~pvi~si~g~--------~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK 168 (289)
T cd02810 97 PGQPLIASVGGS--------SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK 168 (289)
T ss_pred CCCeEEEEeccC--------CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE
Confidence 478999998743 5678888999998999999999887653 12233332 2211 2222221
Q ss_pred ccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310 130 CNLDCETPSEEDLGYLVSRMQATGADIIKLVFS 162 (409)
Q Consensus 130 ~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~ 162 (409)
.= ...+.+++.++.+.+.+.|+|.+.+...
T Consensus 169 l~---~~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 169 LS---PYFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred eC---CCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 10 1123457888888888888888877543
No 205
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.94 E-value=1.5 Score=43.26 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=74.5
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-- 330 (409)
Q Consensus 258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-- 330 (409)
....+++|+......++- +++.+.++.+ .++.+.|+-|-+|.-. ++|+ . +.+.+++--.=- ||
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~----~i~~---~-~i~~~I~p~KDV--DGl~ 124 (297)
T PRK14168 55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPK----HINE---K-KVLNAIDPDKDV--DGFH 124 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccccc--cccC
Confidence 456889999987665542 4677777777 5678999999999742 2221 1 111122211100 11
Q ss_pred -----eE-EEEc------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhC----CCe
Q 015310 331 -----KL-IGYN------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSR----GAR 393 (409)
Q Consensus 331 -----~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~----G~~ 393 (409)
++ .|.+ .--.|++.-|+.. +.+++||+++|+|.+. +||.++.-|.+. ++.
T Consensus 125 ~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~at 191 (297)
T PRK14168 125 PVNVGRLMIGGDEVKFLPCTPAGIQEMLVRS-------------GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANAT 191 (297)
T ss_pred hhhHHHHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCE
Confidence 11 1111 1135666665542 3689999999999877 999999999888 678
Q ss_pred EEEEeC
Q 015310 394 VVIFDI 399 (409)
Q Consensus 394 i~v~nR 399 (409)
|+++.+
T Consensus 192 Vtv~hs 197 (297)
T PRK14168 192 VTIVHT 197 (297)
T ss_pred EEEecC
Confidence 998864
No 206
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.93 E-value=0.3 Score=48.51 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=35.3
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|++++|.|+|+.|.+++..+..+|+ +|++++++++|.+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~ 209 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSL 209 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHH
Confidence 57899999999999999988889999 79999998877654
No 207
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=91.91 E-value=2.8 Score=40.56 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCC--ChhHHHHHH---hcCCCcEEEEeccCCCCCCCC--CCHHHHHHHHHHHH
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQ--PGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDEHKRLEALHLAE 95 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~--~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~ 95 (409)
+....+++++.+.|+|.+-+|+..-...+ ..+.+.++. +..++|+++-.+. .|...+ .++++.....+.+.
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~--~g~~~e~~~~~~~i~~a~~~a~ 170 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYP--RGPGIKNEYDPEVVAHAARVAA 170 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEec--CCCccCCCccHHHHHHHHHHHH
Confidence 55666788888999999999987654221 112333333 3358898875432 232221 24455555667888
Q ss_pred HcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310 96 DLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD 155 (409)
Q Consensus 96 ~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaD 155 (409)
+.|+|||=..+....+.++++... ..++|++|==- +.-++++..+.+.+..+.||+
T Consensus 171 e~GAD~vKt~~~~~~~~l~~~~~~--~~ipV~a~GGi--~~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 171 ELGADIVKTNYTGDPESFREVVEG--CPVPVVIAGGP--KTDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred HHCCCEEeeCCCCCHHHHHHHHHh--CCCCEEEEeCC--CCCCHHHHHHHHHHHHHcCCc
Confidence 999999977754333455555422 23455554210 111346777788777888887
No 208
>PLN02477 glutamate dehydrogenase
Probab=91.91 E-value=0.53 Score=48.47 Aligned_cols=54 Identities=30% Similarity=0.486 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeCC
Q 015310 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID 400 (409)
Q Consensus 338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR~ 400 (409)
-++|...+++..+.+. +.+++|++++|.|.|.+|+.++..|.+.|++|+ |.+.+
T Consensus 185 Tg~Gv~~~~~~~~~~~---------g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 185 TGRGVVFATEALLAEH---------GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred chHHHHHHHHHHHHHc---------CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3577778877766532 257889999999999999999999999999766 87776
No 209
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=91.90 E-value=0.18 Score=47.86 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
++..+|+|+|.||+|.-++-+|++-|+ +|++++-+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 456789999999999999999999999 99998643
No 210
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.86 E-value=10 Score=36.07 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=26.2
Q ss_pred EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 015310 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN 49 (409)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~ 49 (409)
-++.-.++.++..+-++.+.+. +|++|+=+=+-..
T Consensus 9 y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp 43 (244)
T PRK13125 9 YLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYP 43 (244)
T ss_pred EEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCC
Confidence 3566678999988877776555 9999999954433
No 211
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.86 E-value=7.3 Score=36.46 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=74.1
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCC-Cc-EEEEeccCCCCCCCCCCHHHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKP-LP-VLIVYRPKWAGGLYEGDEHKRLE 89 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~-~P-iI~T~R~~~eGG~~~~~~~~~~~ 89 (409)
.++.-+...+.++...-++.+.+.|.-++|+.++- ....+.++.+++..+ .| +++-.=|. .+.+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV-------~~~~---- 79 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYKDDPEVLIGAGTV-------LDAV---- 79 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcCCCCCeEEeeeeC-------CCHH----
Confidence 45667888999999999999999999999999972 122345666665442 23 55433221 1222
Q ss_pred HHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 90 ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
-.+.+++.|++|+= + +....+++ ..++.+..+|--.| || +|+ .++.++|+|++|+
T Consensus 80 ~~~~a~~aGA~Fiv----s-P~~~~~v~~~~~~~~i~~iPG~~----T~--~E~----~~A~~~Gad~vkl 135 (213)
T PRK06552 80 TARLAILAGAQFIV----S-PSFNRETAKICNLYQIPYLPGCM----TV--TEI----VTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHcCCCEEE----C-CCCCHHHHHHHHHcCCCEECCcC----CH--HHH----HHHHHcCCCEEEE
Confidence 34677889998864 2 22223344 23455666665544 34 344 3344689999997
No 212
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.85 E-value=0.32 Score=47.29 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+++++++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3567899999996 7899999999999999999998875
No 213
>PRK12831 putative oxidoreductase; Provisional
Probab=91.84 E-value=0.24 Score=51.80 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=32.2
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+++++|||+|.+|-++++.|.++|.+|+|+.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 45789999999999999999999999999999874
No 214
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.83 E-value=0.26 Score=51.90 Aligned_cols=36 Identities=28% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCCCEEEEEechhHHHHHHHHHHh--CCCeEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKS--RGARVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~--~G~~i~v~nR~~ 401 (409)
..+++|+|+|+|.+|-.+|+.|.+ .|++|+|+.|.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 346789999999999999999986 688999999874
No 215
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.81 E-value=0.21 Score=54.35 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=32.7
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++++|+|+|.+|.++++.|.+.|.+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 58999999999999999999999999999998874
No 216
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=91.81 E-value=6.2 Score=37.47 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC-----------CCChhHHHHHH---hcCCCcEEEEeccCCCC
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-----------FQPGKDLEIIL---TKKPLPVLIVYRPKWAG 77 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~-----------~~~~~~l~~l~---~~~~~PiI~T~R~~~eG 77 (409)
.+.+.+.+.+.+++..-++.+ ..++|.||+=.=|=.. ..+.+.+.++. +..++|+.+-+|...
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~-- 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC-- 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--
Confidence 467999999999999888876 5589999997765211 01122333332 245899999999742
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeccC
Q 015310 78 GLYEGDEHKRLEALHLAEDLGADYVDFELKV 108 (409)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~ 108 (409)
++....++.+.+.+.|+++|-|+-..
T Consensus 146 -----~~~~~~~~a~~l~~aGad~i~Vd~~~ 171 (231)
T TIGR00736 146 -----IPLDELIDALNLVDDGFDGIHVDAMY 171 (231)
T ss_pred -----CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence 23456788888899999999887444
No 217
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=91.79 E-value=6.9 Score=37.08 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=79.5
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----C-------CChhHHHHHH---hcCCCcEEEEeccCCCC
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----F-------QPGKDLEIIL---TKKPLPVLIVYRPKWAG 77 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~-------~~~~~l~~l~---~~~~~PiI~T~R~~~eG 77 (409)
.+.+.|.+.+.+++.+.++.+.. .+|.||+=+-+=.. . .+.+.+.++. +..++|+.+-+|..++
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~- 151 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD- 151 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC-
Confidence 35699999999999988887754 57999997776221 0 1112233322 2358898888887432
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310 78 GLYEGDEHKRLEALHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD 155 (409)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaD 155 (409)
++..++.+.+.+.|+|+|.+.-.... ...+.+...+ .+..||++-=-+ +.++..+ |.++|||
T Consensus 152 -------~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI~----s~eda~~----~l~~GaD 215 (233)
T cd02911 152 -------VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSVT----TIESAKE----MFSYGAD 215 (233)
T ss_pred -------cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCcC----CHHHHHH----HHHcCCC
Confidence 35667778888999999988644321 1122222222 345666653221 2233333 3345788
Q ss_pred EEEEEee
Q 015310 156 IIKLVFS 162 (409)
Q Consensus 156 ivKia~~ 162 (409)
.|=+...
T Consensus 216 ~VmiGR~ 222 (233)
T cd02911 216 MVSVARA 222 (233)
T ss_pred EEEEcCC
Confidence 7766665
No 218
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=91.78 E-value=7.1 Score=36.15 Aligned_cols=136 Identities=14% Similarity=0.079 Sum_probs=87.0
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCC-HHHH
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGD-EHKR 87 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~~ 87 (409)
..|++|+.+-..+.+++++-++... ...|+||.-.+++..+.+ +.++.+++.. ++++-+... ... ..++
T Consensus 2 ~~~~l~~alD~~~~~~~~~~~~~~~-~~~~~vk~g~~l~~~~G~-~~v~~ir~~~--~i~~D~k~~------di~~~~~~ 71 (215)
T PRK13813 2 KDSRIILALDVTDRERALKIAEELD-DYVDAIKVGWPLVLASGL-GIIEELKRYA--PVIADLKVA------DIPNTNRL 71 (215)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHhcc-ccCCEEEEcHHHHHhhCH-HHHHHHHhcC--CEEEEeecc------ccHHHHHH
Confidence 4678999999999999998887763 346899999999886654 4567776543 455433321 111 1222
Q ss_pred HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCC-----CHhHHHHHHHHHHHcCCCEEE
Q 015310 88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETP-----SEEDLGYLVSRMQATGADIIK 158 (409)
Q Consensus 88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~~l~~~~~~~~~~gaDivK 158 (409)
.++.+.+.|+|+|=+=.....+.+..++ ..++.+.++.+..+- . +| -.+.+.....-..+.|++..|
T Consensus 72 --~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~-~-~~~~~~~~~~~~~~v~~m~~e~G~~g~~ 144 (215)
T PRK13813 72 --ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEM-S-HPGALEFIQPHADKLAKLAQEAGAFGVV 144 (215)
T ss_pred --HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeC-C-CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 2266778999999987776544444444 345667787664332 1 22 123455555566678988887
No 219
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.77 E-value=1.7 Score=43.28 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=62.8
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-C-----C----hhHHHHHHhcCCCcEEEEeccCCCCC
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-Q-----P----GKDLEIILTKKPLPVLIVYRPKWAGG 78 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~-----~----~~~l~~l~~~~~~PiI~T~R~~~eGG 78 (409)
+.| +.++|.+.+.+++.+-++.+.+.|+|.+|+=+-+.... . . .+.++.+++..++|+++-++..-
T Consensus 99 ~~p-vi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~--- 174 (325)
T cd04739 99 SIP-VIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFF--- 174 (325)
T ss_pred CCe-EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCc---
Confidence 355 55899999999888888887778999999999764321 1 1 12334455556899999987421
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015310 79 LYEGDEHKRLEALHLAEDLGADYVDFELK 107 (409)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~g~dyvDiEl~ 107 (409)
++..++.+.+.+.|+|.|.+--.
T Consensus 175 ------~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 175 ------SALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred ------cCHHHHHHHHHHcCCCeEEEEcC
Confidence 24556777778889999987543
No 220
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=91.53 E-value=0.84 Score=50.46 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=63.3
Q ss_pred ccHHHHHHHh--cCCCCCeEEE---cccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcH-HHHHHHHHHH
Q 015310 276 DDLKKFFSTY--SSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC-EASITAIEDA 349 (409)
Q Consensus 276 ~~l~~~~~~~--~~~~~~G~nV---T~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~-~G~~~~l~~~ 349 (409)
+|.++|++.. ..|.|.|+|. ..|+=-.+ ++++.+ ..|.-++. |+ .+|+-.=. .|++++++-.
T Consensus 112 ~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i---~~~~~~------~~~ip~f~--DD-~~GTa~v~lA~l~na~~~~ 179 (752)
T PRK07232 112 EDPDKFIEAVAALEPTFGGINLEDIKAPECFYI---EEKLRE------RMDIPVFH--DD-QHGTAIISAAALLNALELV 179 (752)
T ss_pred CCHHHHHHHHHHhCCCccEEeeeecCCchHHHH---HHHHHH------hcCCCeec--cc-cchHHHHHHHHHHHHHHHh
Confidence 5677777766 3578999874 44443333 333222 12333443 32 45543333 4455665421
Q ss_pred HHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC---eEEEEeCC
Q 015310 350 IKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID 400 (409)
Q Consensus 350 l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~---~i~v~nR~ 400 (409)
+..++..++++.|||.+|-+++.-|...|. +|+++++.
T Consensus 180 -------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 220 (752)
T PRK07232 180 -------------GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK 220 (752)
T ss_pred -------------CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 245777899999999999999999999997 69988853
No 221
>PRK06128 oxidoreductase; Provisional
Probab=91.44 E-value=0.33 Score=47.33 Aligned_cols=36 Identities=33% Similarity=0.488 Sum_probs=31.6
Q ss_pred CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
+++|++||.|+ ||.|++++..|.+.|++|++..|+.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~ 89 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPE 89 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence 67899999996 8899999999999999988877653
No 222
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.43 E-value=0.26 Score=51.63 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=32.5
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+++++|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 357899999999999999999999999999998753
No 223
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=91.38 E-value=9.3 Score=35.75 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
.+.+++.+-++++.+.+...|=+.--+ -+...+.++..+. -+.|+=.-+.|.. +-+.+..-.+.+++.|+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~------v~~a~~~l~~~~v-~v~tVigFP~G~~---~~~~K~~E~~~Av~~GA 84 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY------VPLAKELLKGTEV-RICTVVGFPLGAS---TTDVKLYETKEAIKYGA 84 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH------HHHHHHHcCCCCC-eEEEEeCCCCCCC---cHHHHHHHHHHHHHcCC
Confidence 456777777788776665555221110 1122333333333 3444433344432 23445555578999999
Q ss_pred cEEEEeccCcc-------c---hHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--e--ecC
Q 015310 100 DYVDFELKVAS-------N---ILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--F--SVN 164 (409)
Q Consensus 100 dyvDiEl~~~~-------~---~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia--~--~~~ 164 (409)
|-||+=++... . .+.++.. .+..-.|+|+-... .+.+++....+-+.+.|||++|-. . ...
T Consensus 85 dEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf~~~ga 160 (211)
T TIGR00126 85 DEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL----LTDEEIRKACEICIDAGADFVKTSTGFGAGGA 160 (211)
T ss_pred CEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCC
Confidence 99999776641 1 2233332 22223677766543 244778888888899999999987 3 345
Q ss_pred CHhHHHHHHHHhc
Q 015310 165 DITEIARIFQLLS 177 (409)
Q Consensus 165 ~~~D~~~ll~~~~ 177 (409)
+.+|+..+.+...
T Consensus 161 t~~dv~~m~~~v~ 173 (211)
T TIGR00126 161 TVEDVRLMRNTVG 173 (211)
T ss_pred CHHHHHHHHHHhc
Confidence 6788877776653
No 224
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.24 E-value=0.29 Score=50.87 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+++++|+|+|.+|.++++.|.+.|.+|+|+.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 45789999999999999999999999999999875
No 225
>PLN02602 lactate dehydrogenase
Probab=91.16 E-value=0.31 Score=49.12 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=35.5
Q ss_pred CEEEEEechhHHHHHHHHHHhCCC--eEEEEeCChHHHHhhh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~--~i~v~nR~~~ka~~la 408 (409)
+++.|+|+|.+|.+++|.|...|. ++.+++++.++++..+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a 79 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEM 79 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHH
Confidence 699999999999999999998885 7999999988776654
No 226
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.16 E-value=2.9 Score=40.97 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=31.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC-CcEEEEeccCc
Q 015310 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVA 109 (409)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g-~dyvDiEl~~~ 109 (409)
.+.|+|+.+.. .+.+++.+..+.+.+.| +|+|+|-+.++
T Consensus 90 ~~~p~i~si~g--------~~~~~~~~~a~~~~~aG~~D~iElN~~cP 129 (301)
T PRK07259 90 FDTPIIANVAG--------STEEEYAEVAEKLSKAPNVDAIELNISCP 129 (301)
T ss_pred cCCcEEEEecc--------CCHHHHHHHHHHHhccCCcCEEEEECCCC
Confidence 47899999863 25788999999988898 99999976554
No 227
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=91.12 E-value=0.84 Score=46.68 Aligned_cols=128 Identities=23% Similarity=0.305 Sum_probs=77.0
Q ss_pred eeccCCcccCCHHhHHHHHHhcCCCceEeecCc---ccHHHHHHHhcCCCCCeEEE---cccchHHHHhhhhhhcHHHHH
Q 015310 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQA 316 (409)
Q Consensus 243 viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~~~~~~~~G~nV---T~P~K~~i~~~~d~~~~~A~~ 316 (409)
+-|-||.--+.-. |.++ -|+|..=..+++ +++.++++.+ .+.|.|+|+ -.|-+-.+-..+.+.
T Consensus 97 ~ag~pVmeGKa~L-fk~f---aGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~------ 165 (432)
T COG0281 97 LAGKPVMEGKAVL-FKAF---AGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR------ 165 (432)
T ss_pred ccCcchhhhHHHH-HHHh---cCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc------
Confidence 3345555544322 2322 467754444555 3566666665 578999985 445554444333321
Q ss_pred hccceEEEEeCCCCeEEEEcCcH-HHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC---
Q 015310 317 IAAVNTIIRRPSDGKLIGYNTDC-EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA--- 392 (409)
Q Consensus 317 igAvNti~~~~~~g~l~G~NTD~-~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~--- 392 (409)
.|.=++. |+ .+|+-.=. .|++++|+-. +.+++..++++.|||-||-+++..|...|+
T Consensus 166 ---~~IPvFh--DD-qqGTaiv~lA~llnalk~~-------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~ 226 (432)
T COG0281 166 ---MNIPVFH--DD-QQGTAIVTLAALLNALKLT-------------GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEE 226 (432)
T ss_pred ---CCCCccc--cc-ccHHHHHHHHHHHHHHHHh-------------CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcc
Confidence 2333343 22 44443332 3445565421 356788899999999999999999999997
Q ss_pred eEEEEeCC
Q 015310 393 RVVIFDID 400 (409)
Q Consensus 393 ~i~v~nR~ 400 (409)
+|++++|.
T Consensus 227 ~i~~~D~~ 234 (432)
T COG0281 227 NIFVVDRK 234 (432)
T ss_pred cEEEEecC
Confidence 59999874
No 228
>PLN02686 cinnamoyl-CoA reductase
Probab=91.12 E-value=0.51 Score=47.64 Aligned_cols=43 Identities=19% Similarity=0.078 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.+.++|++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~ 92 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEK 92 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3457899999996 889999999999999999888888765543
No 229
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.11 E-value=0.29 Score=50.97 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+++++|+|+|.+|.++++.|.+.|.+|+|+++..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 457899999999999999999999999999998763
No 230
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.09 E-value=3.5 Score=39.90 Aligned_cols=103 Identities=16% Similarity=0.265 Sum_probs=69.3
Q ss_pred EeccCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEeccCc-------------cchHHHHHhccCCCcEEEEeccCC
Q 015310 70 VYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVA-------------SNILGKQYSSHQSGTRFIVSCNLD 133 (409)
Q Consensus 70 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~-------------~~~~~~l~~~~~~~~kiI~S~H~f 133 (409)
|+| +||+ +..+.++..++.+.+-+.|+++|++=+-.. .+.++++....++++++.+-.+.-
T Consensus 5 TLR---DG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 5 TLR---DGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred Ccc---cCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 666 5664 456889999999999999999988754222 234455543322356665544321
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCC
Q 015310 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQV 181 (409)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~ 181 (409)
. .-.+.++.+.+.|.|++++++..++.+......+..++...
T Consensus 82 ~------~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~ 123 (266)
T cd07944 82 N------DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGY 123 (266)
T ss_pred C------CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCC
Confidence 1 11345666778899999999998888888887777665543
No 231
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.06 E-value=2 Score=42.60 Aligned_cols=91 Identities=23% Similarity=0.382 Sum_probs=62.3
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC--------C---CCh----hHHHHHHhcCCCcEEEEecc
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN--------F---QPG----KDLEIILTKKPLPVLIVYRP 73 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~--------~---~~~----~~l~~l~~~~~~PiI~T~R~ 73 (409)
+.| +.+.|.+.+.+++.+.++.+.+.|+|.||+=.-+=.+ . +.. +.++.+++..++|+.+-+|.
T Consensus 62 ~~p-~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~ 140 (319)
T TIGR00737 62 ETP-ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI 140 (319)
T ss_pred cce-EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 455 5699999999999999999888899999996654210 0 111 22334445567899888885
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 74 ~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
-++ .+..+-.++.+.+.+.|+++|.|-
T Consensus 141 g~~-----~~~~~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 141 GWD-----DAHINAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred ccC-----CCcchHHHHHHHHHHhCCCEEEEE
Confidence 322 122234567777788899999873
No 232
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=91.04 E-value=0.36 Score=47.90 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
..++|+++.|+|-|..|++++.-|..+|++|+.++|+.++
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~ 171 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS 171 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3467899999999999999999999999999999987654
No 233
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.02 E-value=1.6 Score=42.67 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=32.1
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc
Q 015310 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS 110 (409)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~ 110 (409)
.+.|+++.++. .+.+++.+..+.+.+.|+|+|+|-+.++.
T Consensus 88 ~~~p~ivsi~g--------~~~~~~~~~a~~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 88 FGTPVIASIAG--------STVEEFVEVAEKLADAGADAIELNISCPN 127 (296)
T ss_pred CCCcEEEEEec--------CCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 47899999973 24678888888888889999999877653
No 234
>PRK04148 hypothetical protein; Provisional
Probab=90.99 E-value=0.44 Score=41.36 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
++++++++|.| .+.+++-.|.++|.+|+.++.+++..+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~ 54 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEK 54 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 46789999999 8888999999999999999999886654
No 235
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.97 E-value=0.3 Score=50.78 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ 402 (409)
.+++||+|+|||+|-+|--++-.|.+.|.+|+++-|+..
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 468899999999999999999999999999999999854
No 236
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=90.96 E-value=0.27 Score=47.25 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=30.4
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
-.++|+|+|.+|.++++.|++.|.+|.|+.|..
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 459999999999999999999999999998874
No 237
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=90.95 E-value=7.6 Score=36.88 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=63.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccc----------------hHHHHH-hccCCCcE
Q 015310 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN----------------ILGKQY-SSHQSGTR 125 (409)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~----------------~~~~l~-~~~~~~~k 125 (409)
.+.|+++.+|.. +.+++.++.+.+.+ ++++|||-+.++.. .+.+++ ..+..+..
T Consensus 66 ~~~~vivnv~~~--------~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~P 136 (231)
T TIGR00736 66 SRALVSVNVRFV--------DLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKP 136 (231)
T ss_pred hcCCEEEEEecC--------CHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCc
Confidence 467999999963 67888888887755 69999999888653 223333 22222233
Q ss_pred EEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH--hHHHHHHHHhccC-CCCEEE
Q 015310 126 FIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI--TEIARIFQLLSHC-QVPIIA 185 (409)
Q Consensus 126 iI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~--~D~~~ll~~~~~~-~~p~i~ 185 (409)
|.+=.-- .. +..+..++.+.+.+.|+|.+-+-.+-... .|...+-++.... ++|+|+
T Consensus 137 VsvKiR~--~~-~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg 196 (231)
T TIGR00736 137 IFVKIRG--NC-IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG 196 (231)
T ss_pred EEEEeCC--CC-CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence 3222110 00 12356677777888888887665433221 2443334443333 366655
No 238
>PRK12862 malic enzyme; Reviewed
Probab=90.93 E-value=1.1 Score=49.67 Aligned_cols=99 Identities=21% Similarity=0.222 Sum_probs=62.2
Q ss_pred ccHHHHHHHh--cCCCCCeEEE---cccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcH-HHHHHHHHHH
Q 015310 276 DDLKKFFSTY--SSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC-EASITAIEDA 349 (409)
Q Consensus 276 ~~l~~~~~~~--~~~~~~G~nV---T~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~-~G~~~~l~~~ 349 (409)
+|.++|++.. ..+.|.|+|. ..|+=-.+ ++.+.+ ..|.-++. |+ .+|+-.=. .|++++++-.
T Consensus 120 ~d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i---~~~~~~------~~~ip~f~--DD-~~GTa~v~la~l~~a~~~~ 187 (763)
T PRK12862 120 SDPDKLVEIVAALEPTFGGINLEDIKAPECFYI---ERELRE------RMKIPVFH--DD-QHGTAIIVAAALLNGLKLV 187 (763)
T ss_pred CCHHHHHHHHHHhCCCcceeeeecccCchHHHH---HHHHHh------cCCCceEe--cC-cccHHHHHHHHHHHHHHHh
Confidence 3555566554 3488999874 45543333 333221 12333444 32 45544333 4556665421
Q ss_pred HHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC---eEEEEeC
Q 015310 350 IKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDI 399 (409)
Q Consensus 350 l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~---~i~v~nR 399 (409)
+.+++..++++.|||.+|-+++.-|...|+ +|++++|
T Consensus 188 -------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~ 227 (763)
T PRK12862 188 -------------GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDI 227 (763)
T ss_pred -------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcC
Confidence 246777899999999999999999999997 6999884
No 239
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.92 E-value=0.34 Score=52.96 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=32.4
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++++|||+|.+|.++++.|.+.|.+|+|++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 57899999999999999999999999999998864
No 240
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=90.89 E-value=2.4 Score=42.11 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=62.6
Q ss_pred CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CChhHH----HHHHhcC--CCcEEEEec
Q 015310 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QPGKDL----EIILTKK--PLPVLIVYR 72 (409)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----------~~~~~l----~~l~~~~--~~PiI~T~R 72 (409)
.| +.+.|.+.+.+++...++.+.+.|+|.||+=+-+-... ...+.+ +.+++.. ++|+-+-+|
T Consensus 63 ~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 63 TL-VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred Cc-EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 44 56999999999999989888888999999999884311 111223 3334434 477777777
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 73 PKWAGGLYEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 73 ~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
.- ++ +.++..++.+.+.+.|+++|.|-
T Consensus 142 ~g-----~~-~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 142 LG-----WD-SGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred CC-----CC-CchHHHHHHHHHHhcCCCEEEEC
Confidence 52 22 22447788889889999999874
No 241
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=90.88 E-value=0.75 Score=41.14 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++||+++|+|.++ .++.++.-|.+.|+.|+++...-
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T 70 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT 70 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence 678999999999887 99999999999999999987653
No 242
>PRK06199 ornithine cyclodeaminase; Validated
Probab=90.77 E-value=0.4 Score=48.92 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=36.3
Q ss_pred CCEEEEEechhHHHHHHHHHHhC--CC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSR--GA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~--G~-~i~v~nR~~~ka~~la 408 (409)
-+++.|+|+|.-||.-+.++... .. +|+|+||+.+++++++
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~ 198 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFA 198 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence 47899999999999999998874 37 8999999999998875
No 243
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.75 E-value=0.47 Score=47.29 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeC---ChHHHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI---DFEQSL 405 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR---~~~ka~ 405 (409)
.|++++|+|+|++|..++..+...|++|++++| +.+|.+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~ 213 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKAD 213 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 578999999999999999888899999999998 455543
No 244
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.70 E-value=0.31 Score=47.79 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~ 401 (409)
.+.+|+|+|+||.|-.++..|+..|+ +|+|++-+.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 45789999999999999999999999 899998653
No 245
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.65 E-value=0.36 Score=53.64 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=32.3
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+++|+|||+|.+|.++|+.|.+.|.+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 45789999999999999999999999999999874
No 246
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=90.62 E-value=4.9 Score=40.97 Aligned_cols=231 Identities=17% Similarity=0.191 Sum_probs=124.3
Q ss_pred eeEEEee----ccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHH-HHHhcCCCcE-----EEEeccCCCCCCC
Q 015310 11 TMICAPL----MAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE-IILTKKPLPV-----LIVYRPKWAGGLY 80 (409)
Q Consensus 11 ~~icv~l----~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~-~l~~~~~~Pi-----I~T~R~~~eGG~~ 80 (409)
+||=+-| ...+.++-++.++.+.+.|||.| .|+-..-+.. .+. .+++.+++|+ -=.+. ...+...
T Consensus 61 tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADti---MDLStGgdl~-~iR~~il~~s~vpvGTVPiYqa~~-~~~~~~~ 135 (423)
T TIGR00190 61 TKVNANIGTSADTSDIEEEVEKALIAIKYGADTV---MDLSTGGDLD-EIRKAILDAVPVPVGTVPIYQAAE-KVHGAVE 135 (423)
T ss_pred eEEEeeecCCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHH-HHHHHHHHcCCCCccCccHHHHHH-HhcCChh
Confidence 4444444 33445555566778888999998 5766543322 232 2334444443 11111 1123455
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEec----------cCCCCCCCHhHHHHHHHHHH
Q 015310 81 EGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC----------NLDCETPSEEDLGYLVSRMQ 150 (409)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tp~~~~l~~~~~~~~ 150 (409)
..++++.++.++.=++.|+||+-|=-....+.++.+.. .+..-=|+|. |+-++.|=.++...+++-++
T Consensus 136 ~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~--~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~ 213 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKR--SGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAK 213 (423)
T ss_pred hCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHh--CCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHH
Confidence 67899999999999999999999877666655555532 2233346664 66678887777777777777
Q ss_pred HcCCCEEEE--EeecCCH---hHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHH
Q 015310 151 ATGADIIKL--VFSVNDI---TEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESL 225 (409)
Q Consensus 151 ~~gaDivKi--a~~~~~~---~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l 225 (409)
++.. .+=+ ...|-.. .|-..+.++.. .|++-+-.|=.+- .+ +-+ -||.+++.++
T Consensus 214 ~yDV-tlSLGDglRPG~i~DA~D~aQi~El~~----------lgeL~~rA~e~gV---Qv-----MVE--GPGHvPl~~I 272 (423)
T TIGR00190 214 EYDV-TLSLGDGLRPGCIADATDRAQISELIT----------LGELVERAREADV---QC-----MVE--GPGHVPLDQI 272 (423)
T ss_pred HhCe-eeeccCCcCCCccccCCcHHHHHHHHH----------HHHHHHHHHHcCC---eE-----EEE--CCCCCcHHHH
Confidence 6541 0000 1223333 33333333321 1222222222211 11 123 3999999998
Q ss_pred HhhhhhccccccceEEeeeccCCccc------CCHHhHHHHHHhcCCCce
Q 015310 226 RQTYKVEHINADTKVFGLISKPVGHS------KGPILHNPTFRHVNYNGI 269 (409)
Q Consensus 226 ~~~~~~~~i~~~~~~~~viG~pi~hS------~SP~ihn~~f~~~gl~~~ 269 (409)
..-.++....-..-=|+|+|-=+.-. .+-.|=-+.....|-|..
T Consensus 273 ~~nv~lqK~lc~~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAdfL 322 (423)
T TIGR00190 273 EANVRLQKELCDEAPFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGADFL 322 (423)
T ss_pred HHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCeE
Confidence 87766532222223388888433322 233444445566676653
No 247
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.56 E-value=19 Score=38.16 Aligned_cols=32 Identities=31% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR 399 (409)
...++|||+|.+|.++|..|++.|.+++|+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 45799999999999999999999998888754
No 248
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=90.54 E-value=14 Score=37.43 Aligned_cols=194 Identities=15% Similarity=0.195 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
+.++.++-++...+.|.|.+|.=+=...+ .+.+.+..+.+.. +..+..-.|.. .+-++.+++.|+
T Consensus 21 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~-~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~a~~~g~ 86 (365)
T TIGR02660 21 TAAEKLAIARALDEAGVDELEVGIPAMGE-EERAVIRAIVALGLPARLMAWCRAR-------------DADIEAAARCGV 86 (365)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHcCCCcEEEEEcCCC-------------HHHHHHHHcCCc
Confidence 34555555566667899999995322211 1123455554432 33333333432 223567788899
Q ss_pred cEEEEeccCcc------------chH---HHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310 100 DYVDFELKVAS------------NIL---GKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (409)
Q Consensus 100 dyvDiEl~~~~------------~~~---~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~ 163 (409)
+.|-+=....+ +.+ .+.+ .+++.+.++-.++=|+..++ .+.+.++++.+.++|+|.+-++=+.
T Consensus 87 ~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~-~~~l~~~~~~~~~~Ga~~i~l~DT~ 165 (365)
T TIGR02660 87 DAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRAD-PDFLVELAEVAAEAGADRFRFADTV 165 (365)
T ss_pred CEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCC-HHHHHHHHHHHHHcCcCEEEEcccC
Confidence 98888776543 111 1222 35566778888877765554 6789999999999999998887544
Q ss_pred C--CHhHHHHHHHHhccC-CCCEEEEEcCcc--chhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhh
Q 015310 164 N--DITEIARIFQLLSHC-QVPIIAYSVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTY 229 (409)
Q Consensus 164 ~--~~~D~~~ll~~~~~~-~~p~i~~~MG~~--G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~ 229 (409)
- ++.++.++.+.+.+. +.|+-.=+=-.. +...=+..-..|....-+++.. +-..|..+++++...+
T Consensus 166 G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 166 GILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHH
Confidence 3 577887777765432 444321111111 2222222333344333333332 2457778888776655
No 249
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.53 E-value=0.5 Score=45.57 Aligned_cols=39 Identities=36% Similarity=0.413 Sum_probs=34.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL 405 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~ 405 (409)
.+++++|+|+|+.|.+++..++.+|+ +|++++++.+|.+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~ 159 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRE 159 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 57899999999999999998899999 5988888877754
No 250
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=90.49 E-value=11 Score=36.02 Aligned_cols=193 Identities=16% Similarity=0.204 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
+.++.++-++...+.|.|.+|.=+=.+.+ .+.+.+..+.+. .+..+..-.|.. + +-++.+.+.|+
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~-~~~e~~~~l~~~~~~~~~~~~~r~~---------~----~~v~~a~~~g~ 83 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVGIPAMGE-EEREAIRAIVALGLPARLIVWCRAV---------K----EDIEAALRCGV 83 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHHHHHhcCCCCEEEEeccCC---------H----HHHHHHHhCCc
Confidence 45566666666677899999996322221 112345555442 233333333321 1 12466778899
Q ss_pred cEEEEeccCccch------------H---HHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310 100 DYVDFELKVASNI------------L---GKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (409)
Q Consensus 100 dyvDiEl~~~~~~------------~---~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~ 163 (409)
++|-+-....+.. + .+.+ .+++.+..+-++.=+...+ +.+.+.++++++.+.|+|.+=++=+.
T Consensus 84 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l~DT~ 162 (259)
T cd07939 84 TAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRA-DPDFLIEFAEVAQEAGADRLRFADTV 162 (259)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCC-CHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 9988866554321 1 1222 3556677777666554333 36889999999999999988777443
Q ss_pred C--CHhHHHHHHHHhcc-CCCCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 164 N--DITEIARIFQLLSH-CQVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 164 ~--~~~D~~~ll~~~~~-~~~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
- ++.++.+++..+.+ .+.|+-. ++||..-.+. .-.-|..+.=+++.. +-..|..+.+++...++.
T Consensus 163 G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~la---Ai~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~ 236 (259)
T cd07939 163 GILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLA---AVRAGATHVSVTVNGLGERAGNAALEEVVMALKH 236 (259)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHH---HHHhCCCEEEEecccccccccCcCHHHHHHHHHH
Confidence 3 57888888776543 2333211 1122221222 222233232233322 245888888888776653
No 251
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.46 E-value=0.37 Score=50.39 Aligned_cols=35 Identities=37% Similarity=0.440 Sum_probs=32.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++++|+|+|.+|.++++.|.+.|.+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 57899999999999999999999999999998764
No 252
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.40 E-value=0.51 Score=46.95 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~ 406 (409)
.|.+++|+|+|+.|..++..++. .|. +|++++++++|.+.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~ 204 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL 204 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH
Confidence 47899999999999988877775 565 89999999887654
No 253
>PRK14851 hypothetical protein; Provisional
Probab=90.32 E-value=0.31 Score=53.36 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=31.8
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++.+|+|+|+||.|..++..|+..|+ +++|++-|
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 456899999999999999999999999 99998755
No 254
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.29 E-value=0.18 Score=43.35 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=33.3
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHHhhh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSLLLL 408 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~~la 408 (409)
-++-|||+|-+|.+.+.+|.+.|.. +-|++|+.+.++.++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~ 51 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAA 51 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccc
Confidence 4899999999999999999999995 467799987777664
No 255
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.26 E-value=5.7 Score=36.99 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=72.0
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (409)
.++.-+...+.++...-++.+.+.|..++|+.++- ....+.++.+++..+ -+++-.=|. .+.+ -.
T Consensus 9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~-~~~vGAGTV-------l~~~----~a 73 (204)
T TIGR01182 9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVP-DALIGAGTV-------LNPE----QL 73 (204)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCC-CCEEEEEeC-------CCHH----HH
Confidence 35566888999999999999999999999999853 122344556654433 133322111 1222 24
Q ss_pred HHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310 92 HLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (409)
Q Consensus 92 ~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~ 161 (409)
+.+++.|++|+ |-=. +..++. ..++.+..+|-- --||+ | +.++.++|||++|+--
T Consensus 74 ~~a~~aGA~Fi-vsP~----~~~~v~~~~~~~~i~~iPG----~~Tpt--E----i~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 74 RQAVDAGAQFI-VSPG----LTPELAKHAQDHGIPIIPG----VATPS--E----IMLALELGITALKLFP 129 (204)
T ss_pred HHHHHcCCCEE-ECCC----CCHHHHHHHHHcCCcEECC----CCCHH--H----HHHHHHCCCCEEEECC
Confidence 56788999998 2212 223333 234455544442 24664 2 4556688999999743
No 256
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.21 E-value=0.48 Score=46.84 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+.||++.|+|-|.+|++++.-|..+|++|+.++|+.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~ 155 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY 155 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35789999999999999999998888999999999974
No 257
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=90.18 E-value=0.36 Score=46.45 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=30.3
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..|+|+|+|.+|.++++.|++.|.+|.|+.|..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 469999999999999999999999999998864
No 258
>PRK06823 ornithine cyclodeaminase; Validated
Probab=90.17 E-value=0.53 Score=46.79 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=36.0
Q ss_pred CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la 408 (409)
.+++.|+|+|.-|+.-+.++... .. +|+|+||+.+++++++
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~ 170 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYR 170 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH
Confidence 47899999999999999988765 45 8999999999998875
No 259
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=90.08 E-value=0.35 Score=45.49 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=29.8
Q ss_pred EEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.|+|+|||.++..++|.|++.|.+|.|+.|+.
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 59999999999999999999999999998864
No 260
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=90.07 E-value=0.55 Score=46.32 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=36.3
Q ss_pred CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la 408 (409)
.+++.|+|+|.-|+.-+.++... .. +|+|+||+.+++++++
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~ 159 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFA 159 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH
Confidence 47899999999999999888765 56 8999999999999875
No 261
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.06 E-value=1.8 Score=43.65 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcCC----CcEEEEeccCC--
Q 015310 26 LSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKP----LPVLIVYRPKW-- 75 (409)
Q Consensus 26 ~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~----~PiI~T~R~~~-- 75 (409)
.+.++++.+.|.|.||+-.-+ +... .+ .+.+..+++..+ .++.+.+|-..
T Consensus 147 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 147 GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc
Confidence 444566677899999998753 2211 11 133445555444 67888888553
Q ss_pred --CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310 76 --AGGLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (409)
Q Consensus 76 --eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl 106 (409)
+|| .+.++..++++.+.+.|+|||+|-.
T Consensus 227 ~~~~g---~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 227 PEEPG---IRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred ccCCC---CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 334 3567888999999999999999854
No 262
>PRK14030 glutamate dehydrogenase; Provisional
Probab=90.04 E-value=1.2 Score=46.31 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEE
Q 015310 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396 (409)
Q Consensus 338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v 396 (409)
-++|...+++..+... +.+++|++|+|-|.|.+|..++..|.+.|++|+.
T Consensus 207 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 207 TGFGALYFVHQMLETK---------GIDIKGKTVAISGFGNVAWGAATKATELGAKVVT 256 (445)
T ss_pred cHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 4578888887766532 2578999999999999999999999999997666
No 263
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=89.97 E-value=0.38 Score=46.18 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~ 401 (409)
+++.+|+|+|+||.|..++..|...|+ +|+|++-+.
T Consensus 24 L~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~ 60 (287)
T PTZ00245 24 LMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60 (287)
T ss_pred HhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence 456789999999999999999999999 999998664
No 264
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.97 E-value=0.36 Score=52.72 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=30.8
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..|+|||+|-+|.++|+.|++.|.+|+|+.|..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 579999999999999999999999999999863
No 265
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.96 E-value=0.63 Score=48.16 Aligned_cols=36 Identities=42% Similarity=0.642 Sum_probs=32.4
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~ 400 (409)
++++++++|.|+ ||.|++++..|.+.|++|++++|.
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~ 243 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP 243 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457899999997 999999999999999999988884
No 266
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.96 E-value=0.58 Score=48.34 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=37.9
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
...++++|+|.|..|+.++..|.+.|.+++++++++++.+.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~ 270 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEEL 270 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 456899999999999999999999999999999999887665
No 267
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.82 E-value=0.55 Score=46.28 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=35.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~~ 406 (409)
.|.+++|+|+|+.|.+++..+...|++ |++++++.+|.+.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~ 203 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLEL 203 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 478999999999999999999999995 9999998877654
No 268
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.79 E-value=0.57 Score=45.90 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL 405 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~ 405 (409)
++++++|+|+|++|..++..++..|+ .|.+++++.+|.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~ 183 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD 183 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence 46789999999999999988888999 5777888777654
No 269
>PRK07574 formate dehydrogenase; Provisional
Probab=89.78 E-value=0.48 Score=48.38 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+.|+++.|+|.|.+|++++..|..+|++|+.++|+.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 35789999999999999999999999999999999975
No 270
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.78 E-value=1.2 Score=38.85 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCC
Q 015310 364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 364 ~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~ 400 (409)
.+++||+++|+|.+. .|+.++.-|.+.|+.+++++++
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~ 61 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK 61 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC
Confidence 678999999999766 8999999999999999999853
No 271
>PRK02227 hypothetical protein; Provisional
Probab=89.74 E-value=3.3 Score=39.33 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=60.9
Q ss_pred HHHHcCCcEEEEeccC-------ccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015310 93 LAEDLGADYVDFELKV-------ASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND 165 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~-------~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~ 165 (409)
.+++.|+|+||+-=-. +...+++++..-++...+=...-|+...| .++......+...|+|+||+-.++.+
T Consensus 15 ~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p--~~~~~aa~~~a~~GvDyVKvGl~~~~ 92 (238)
T PRK02227 15 EALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKP--GTISLAALGAAATGADYVKVGLYGGK 92 (238)
T ss_pred HHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCc--hHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 4567889999984322 22456666643333332222233443334 67888888999999999999998554
Q ss_pred -HhHHHHHHHHh----ccC--CCCEEEEEcCccc
Q 015310 166 -ITEIARIFQLL----SHC--QVPIIAYSVGERG 192 (409)
Q Consensus 166 -~~D~~~ll~~~----~~~--~~p~i~~~MG~~G 192 (409)
.++....++-. ... +..+|+....+.+
T Consensus 93 ~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~ 126 (238)
T PRK02227 93 TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAH 126 (238)
T ss_pred cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccc
Confidence 55555555332 222 5678887777765
No 272
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=89.73 E-value=0.58 Score=46.40 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=30.9
Q ss_pred CCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la 408 (409)
.+++.|+|+|.-|+.-+.++.. .+. +|+|++|+.+++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~ 170 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFA 170 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHH
Confidence 4689999999999999988876 567 8999999999999876
No 273
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=89.69 E-value=3.5 Score=41.29 Aligned_cols=92 Identities=11% Similarity=0.109 Sum_probs=66.2
Q ss_pred CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CCh----hHHHHHHhcCCCcEEEEeccC
Q 015310 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QPG----KDLEIILTKKPLPVLIVYRPK 74 (409)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----------~~~----~~l~~l~~~~~~PiI~T~R~~ 74 (409)
+| +.+.|.+.+.+++.+.++.+.+.|+|.||+=..+-... ... +.++.+++..+.|+-+-+|-.
T Consensus 65 ~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g 143 (333)
T PRK11815 65 HP-VALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG 143 (333)
T ss_pred Cc-EEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee
Confidence 44 66999999999999999998888999999988763210 111 233344444578888877865
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 75 WAGGLYEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 75 ~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
.++. .+.++..++.+.+.+.|+++|.|-
T Consensus 144 ~~~~---~t~~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 144 IDDQ---DSYEFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred eCCC---cCHHHHHHHHHHHHHhCCCEEEEc
Confidence 5542 244567788888889999998875
No 274
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.69 E-value=0.59 Score=44.09 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+++++|||+|+|.+|.-=+..|.+.|++|+|++-+.
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 34678999999999999888899999999999998764
No 275
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.68 E-value=12 Score=35.25 Aligned_cols=189 Identities=16% Similarity=0.138 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHhcCCC---EEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310 21 SVEQVLSNMYQAKAEGAD---VVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL 97 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD---~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 97 (409)
++.++.+. +.+.|+| ++.+=-|........+.+.++++..++|+++. ||-.+. ++-. .++..
T Consensus 28 d~~~~a~~---~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~------GGI~s~--~d~~----~~l~~ 92 (243)
T cd04731 28 DPVELAKR---YNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVG------GGIRSL--EDAR----RLLRA 92 (243)
T ss_pred CHHHHHHH---HHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEe------CCCCCH--HHHH----HHHHc
Confidence 55555544 4456888 44433332121122345666767778999954 776533 2222 22346
Q ss_pred CCcEEEEeccC--ccchHHHHHhccCCCcEEEEeccC---------------CCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310 98 GADYVDFELKV--ASNILGKQYSSHQSGTRFIVSCNL---------------DCETPSEEDLGYLVSRMQATGADIIKLV 160 (409)
Q Consensus 98 g~dyvDiEl~~--~~~~~~~l~~~~~~~~kiI~S~H~---------------f~~tp~~~~l~~~~~~~~~~gaDivKia 160 (409)
|++.|.+=... ..+.+.++...- +.-++++|.-- ++.+ ..+..+..+++.+.|+|.+=+-
T Consensus 93 G~~~v~ig~~~~~~p~~~~~i~~~~-~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~--~~~~~~~~~~l~~~G~d~i~v~ 169 (243)
T cd04731 93 GADKVSINSAAVENPELIREIAKRF-GSQCVVVSIDAKRRGDGGYEVYTHGGRKPT--GLDAVEWAKEVEELGAGEILLT 169 (243)
T ss_pred CCceEEECchhhhChHHHHHHHHHc-CCCCEEEEEEeeecCCCceEEEEcCCceec--CCCHHHHHHHHHHCCCCEEEEe
Confidence 88888875433 334555554221 22257777421 1122 2456777888899999975552
Q ss_pred eecCC----HhHHHHHHHHhccCCCCEEEEE-cCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhh
Q 015310 161 FSVND----ITEIARIFQLLSHCQVPIIAYS-VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230 (409)
Q Consensus 161 ~~~~~----~~D~~~ll~~~~~~~~p~i~~~-MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~ 230 (409)
....+ .-|...+-++....+.|+|+-+ +...-.+-+++.. +. .....++.+--.|+++++++++.++
T Consensus 170 ~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~--~g-~dgv~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 170 SMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE--GG-ADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred ccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh--CC-CCEEEEeHHHHcCCCCHHHHHHHHh
Confidence 22221 1122222333334578877653 3333345555532 11 1223334444578899998877653
No 276
>PLN02342 ornithine carbamoyltransferase
Probab=89.67 E-value=16 Score=36.97 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=118.1
Q ss_pred EEEcCccchhhhhhcCCCCCccccccCCCCCCC------CCCCHHHHHhhhhhc----cc----------cccceEEeee
Q 015310 185 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL------GLPTVESLRQTYKVE----HI----------NADTKVFGLI 244 (409)
Q Consensus 185 ~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAP------GQ~~~~~l~~~~~~~----~i----------~~~~~~~~vi 244 (409)
+++.....+-+|+.+...|+.-|..+.+..... .|++-+|+..+++.- .. .......-+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~lF 92 (348)
T PLN02342 13 AVSSSSRARRGLVVCAASSSAAAPSPIKGKSKPKHFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAMIF 92 (348)
T ss_pred cccchhHHHHhhhHhhhhcCCCCcccccCCCCCCCccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEEEe
Confidence 455666677889999999998887666554332 566777777777521 10 1111233355
Q ss_pred ccCCcccCCHHhHHHHHHhcCCCceEeecCc------ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhc
Q 015310 245 SKPVGHSKGPILHNPTFRHVNYNGIYVPMFV------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIA 318 (409)
Q Consensus 245 G~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~ig 318 (409)
=.|-. |+-.=+..+..+||-...|..... |.+.+....+... ++++-+=.|-...+..+. +..+
T Consensus 93 ~epST--RTR~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y-~D~IviR~~~~~~~~~la-------~~~~ 162 (348)
T PLN02342 93 TKPSM--RTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRY-NDIIMARVFAHQDVLDLA-------EYSS 162 (348)
T ss_pred cCCCc--chHHHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEeCCChHHHHHHH-------HhCC
Confidence 55543 555556899999999988874332 5677777777554 677777666444332222 2111
Q ss_pred cceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310 319 AVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF 397 (409)
Q Consensus 319 AvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~ 397 (409)
| -|++-. ++ ..+=|-...=+.++.+.+ ..++|.+++++|-+. ++++.+.++..+|++|+++
T Consensus 163 -v-PVINA~-~~--~~HPtQaLaDl~Ti~e~~-------------G~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~ 224 (348)
T PLN02342 163 -V-PVINGL-TD--YNHPCQIMADALTIIEHI-------------GRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCA 224 (348)
T ss_pred -C-CEEECC-CC--CCChHHHHHHHHHHHHHh-------------CCcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEE
Confidence 1 244431 22 246666555556665433 247899999999744 9999999999999998887
Q ss_pred eC
Q 015310 398 DI 399 (409)
Q Consensus 398 nR 399 (409)
.-
T Consensus 225 ~P 226 (348)
T PLN02342 225 CP 226 (348)
T ss_pred CC
Confidence 63
No 277
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=89.66 E-value=2.5 Score=42.42 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcCCCcEEEEeccCCCCCCCC
Q 015310 26 LSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKPLPVLIVYRPKWAGGLYE 81 (409)
Q Consensus 26 ~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~~PiI~T~R~~~eGG~~~ 81 (409)
...++++.+.|.|.||+-.-+ |... ++ .+.+..+++..+.|+.+-++.. |...--
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~-d~~~~G 223 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISAS-DYHPGG 223 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccCCCC
Confidence 344556677899999998773 2211 11 1344455555566665555432 221112
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc
Q 015310 82 GDEHKRLEALHLAEDLGADYVDFELK 107 (409)
Q Consensus 82 ~~~~~~~~ll~~~~~~g~dyvDiEl~ 107 (409)
.+.++..++.+.+.+.|+|||+|-..
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 36788999999998999999998543
No 278
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.58 E-value=0.67 Score=46.13 Aligned_cols=40 Identities=40% Similarity=0.591 Sum_probs=35.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.|.+++|+|+|+.|.+++..+...|++|+++.++.+|.+.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~ 205 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEM 205 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence 4789999999999999999999999998888888877654
No 279
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=89.56 E-value=7 Score=39.28 Aligned_cols=148 Identities=18% Similarity=0.264 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
.|.+.-++|+++..+.|||+|=+=+.-. +..+.+..+.+..++|++.-+- .-.++...+++.|+
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~---~~a~al~~I~~~~~iPlvADIH-------------Fd~~lAl~a~~~G~ 102 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPDM---EAAAALPEIKKQLPVPLVADIH-------------FDYRLALAAAEAGA 102 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCCH---HHHHhHHHHHHcCCCCEEEecC-------------CCHHHHHHHHHhCC
Confidence 3456678888888899999995544322 2345677788888999996542 11234456777888
Q ss_pred cEEEEeccCc---cchHHHHH-hccCCCcEE-EEeccC---------C-CCCCC--HhHHHHHHHHHHHcCCCEEEEEee
Q 015310 100 DYVDFELKVA---SNILGKQY-SSHQSGTRF-IVSCNL---------D-CETPS--EEDLGYLVSRMQATGADIIKLVFS 162 (409)
Q Consensus 100 dyvDiEl~~~---~~~~~~l~-~~~~~~~ki-I~S~H~---------f-~~tp~--~~~l~~~~~~~~~~gaDivKia~~ 162 (409)
|-|-|-=-.. ++.++.++ .+++.++.| |+-.|= + +.||. .+...+.++-+.++|-+=+|+-..
T Consensus 103 ~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K 182 (360)
T PRK00366 103 DALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK 182 (360)
T ss_pred CEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 8876643332 23455555 345555544 443331 1 12431 133456677788899999999999
Q ss_pred cCCHhHHHHHHHHhcc-CCCCE
Q 015310 163 VNDITEIARIFQLLSH-CQVPI 183 (409)
Q Consensus 163 ~~~~~D~~~ll~~~~~-~~~p~ 183 (409)
+.+..+..+..+++.+ ++.|+
T Consensus 183 sS~v~~~i~ayrlla~~~dyPL 204 (360)
T PRK00366 183 ASDVQDLIAAYRLLAKRCDYPL 204 (360)
T ss_pred cCCHHHHHHHHHHHHhcCCCCc
Confidence 9998887776666543 36664
No 280
>PRK13984 putative oxidoreductase; Provisional
Probab=89.55 E-value=0.46 Score=51.29 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.6
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+++++|+|+|.+|.++++.|.++|.+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 357899999999999999999999999999998764
No 281
>PLN03139 formate dehydrogenase; Provisional
Probab=89.42 E-value=0.63 Score=47.54 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+.|+++.|+|.|.+|++++..|...|++|.+++|+.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~ 232 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK 232 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC
Confidence 45789999999999999999999999999999999874
No 282
>PRK07589 ornithine cyclodeaminase; Validated
Probab=89.41 E-value=0.64 Score=46.80 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=35.5
Q ss_pred CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la 408 (409)
-+++.|+|+|.-|+.-+.++... .. +|+|+||+.+++++++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~ 171 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLA 171 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHH
Confidence 36899999999999998887765 46 8999999999998875
No 283
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=89.36 E-value=0.44 Score=54.65 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
.+++|+|||+|.+|.++|+.|++.|.+|+|+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 5789999999999999999999999999999875
No 284
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=89.35 E-value=4.4 Score=37.05 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=50.0
Q ss_pred EeeccCCHHHHHHHHHHHHhcCCCEEEEE-ec--CCCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310 15 APLMAQSVEQVLSNMYQAKAEGADVVEIR-LD--CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (409)
Q Consensus 15 v~l~~~~~~e~~~~~~~~~~~~aD~vElR-lD--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 90 (409)
.+|...+.+.+.++++.+.+.|+|.+|+- .| +..+... .+.++.+++..+.|+.+.+... +.++ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~--------~~~~---~ 71 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVE--------NPDR---Y 71 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeC--------CHHH---H
Confidence 56777888888888888888899999994 33 2333322 2456677665677864434332 1222 3
Q ss_pred HHHHHHcCCcEEEE
Q 015310 91 LHLAEDLGADYVDF 104 (409)
Q Consensus 91 l~~~~~~g~dyvDi 104 (409)
++.+.+.|+|.|=+
T Consensus 72 ~~~~~~~gadgv~v 85 (210)
T TIGR01163 72 IEDFAEAGADIITV 85 (210)
T ss_pred HHHHHHcCCCEEEE
Confidence 55666788877443
No 285
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.31 E-value=0.5 Score=53.97 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=36.6
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-e-------------EEEEeCChHHHHhhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-R-------------VVIFDIDFEQSLLLL 408 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~-------------i~v~nR~~~ka~~la 408 (409)
+.|+|+|||||.+|+.++..|.+..- + |+|++++.+++++++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la 623 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV 623 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH
Confidence 46799999999999999999987642 4 999999999999875
No 286
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.30 E-value=9.8 Score=35.61 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=72.3
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (409)
.++.-+...+.++..+-++.+.+.|.+++|+-+. .....+.++.+++..+- +++-.=|. .++ +-.
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~---~~~~~~~I~~l~~~~p~-~~IGAGTV-------l~~----~~a 80 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLR---TPAALEAIRLIAKEVPE-ALIGAGTV-------LNP----EQL 80 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecC---CccHHHHHHHHHHHCCC-CEEEEeec-------cCH----HHH
Confidence 4556688999999999999988889999999943 22223456666654432 32221111 122 346
Q ss_pred HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
+.+++.|++|+=.--.. ++.++. .++.+.-+|=.. .||+ | +.++.++|+|++|+
T Consensus 81 ~~a~~aGA~FivsP~~~-~~vi~~---a~~~~i~~iPG~----~Tpt--E----i~~a~~~Ga~~vKl 134 (212)
T PRK05718 81 AQAIEAGAQFIVSPGLT-PPLLKA---AQEGPIPLIPGV----STPS--E----LMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHcCCCEEECCCCC-HHHHHH---HHHcCCCEeCCC----CCHH--H----HHHHHHCCCCEEEE
Confidence 77889999997543322 233322 333444444222 2443 2 55677899999999
No 287
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=89.27 E-value=3.7 Score=41.19 Aligned_cols=80 Identities=14% Similarity=-0.039 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCEEEEEecC-------CC---CC-CC-------------hhHHHHHHhcCCC-cEEEEeccCC-C--
Q 015310 25 VLSNMYQAKAEGADVVEIRLDC-------IN---NF-QP-------------GKDLEIILTKKPL-PVLIVYRPKW-A-- 76 (409)
Q Consensus 25 ~~~~~~~~~~~~aD~vElRlD~-------l~---~~-~~-------------~~~l~~l~~~~~~-PiI~T~R~~~-e-- 76 (409)
+...++++.+.|.|.||+-.-+ |. +. .+ .+.++.+++..+. | +++|-.. |
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~--v~vRis~~~~~ 231 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR--VGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc--eEEEECccccC
Confidence 3444566677899999998775 11 11 11 1334445544433 5 5566432 2
Q ss_pred -CCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310 77 -GGLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (409)
Q Consensus 77 -GG~~~~~~~~~~~ll~~~~~~g~dyvDiEl 106 (409)
||.+..+.++..++.+.+.+.|+|||+|-.
T Consensus 232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 232 NDMGDSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 333345678889999999999999999843
No 288
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=89.24 E-value=0.43 Score=49.74 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=31.0
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ 402 (409)
-.|+|+|+|.+|.++|..|++.|.+|.|+.|..+
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4699999999999999999999999999998743
No 289
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=89.20 E-value=15 Score=35.37 Aligned_cols=140 Identities=16% Similarity=0.292 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCC----CCCCChhH---HHHHH----hcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310 20 QSVEQVLSNMYQAKAEGADVVEIRLDCI----NNFQPGKD---LEIIL----TKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (409)
Q Consensus 20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~~~~~---l~~l~----~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 88 (409)
.+.+++++.+++..+.|||+|.+=...- ...++.++ +..++ ...+.|+-+- | ..-
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T------------~~~ 85 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--T------------YRA 85 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--C------------CCH
Confidence 3568888888888899999998832211 11122223 22222 2236665332 1 334
Q ss_pred HHHHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCH---------------hHHHHHHHHHHHc
Q 015310 89 EALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------------EDLGYLVSRMQAT 152 (409)
Q Consensus 89 ~ll~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------------~~l~~~~~~~~~~ 152 (409)
+.++++++.|+++| |+.....++..+ + .++.+..+|+- |+ .++|.. +.+.+.++++.+.
T Consensus 86 ~vi~~al~~G~~iINsis~~~~~~~~~-l--~~~~~~~vV~m-~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQDPAMLE-V--AAEYGVPLVLM-HM-RGTPRTMQENPHYEDVVEEVLRFLEARAEELVAA 160 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCCchhHH-H--HHHcCCcEEEE-eC-CCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 57788888998875 444433333333 2 23467888884 43 234422 2255667778888
Q ss_pred CCCEEEEEeec-----CCHhHHHHHHHHhcc
Q 015310 153 GADIIKLVFSV-----NDITEIARIFQLLSH 178 (409)
Q Consensus 153 gaDivKia~~~-----~~~~D~~~ll~~~~~ 178 (409)
|-+.-++..=| ++.++.+.+++.+..
T Consensus 161 Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~ 191 (257)
T TIGR01496 161 GVAAERIILDPGIGFGKTPEHNLELLKHLEE 191 (257)
T ss_pred CCCHHHEEEECCCCcccCHHHHHHHHHHHHH
Confidence 87544554433 466777777766543
No 290
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.18 E-value=0.57 Score=46.84 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEechhHHHHHHHHH-HhCCCeEEEEeCChHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGA-KSRGARVVIFDIDFEQ 403 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL-~~~G~~i~v~nR~~~k 403 (409)
..+.|+++.|+|.|..|++++..| ...|++|+.++|+..+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 182 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNA 182 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccH
Confidence 357899999999999999999998 5578899999987643
No 291
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.14 E-value=16 Score=35.34 Aligned_cols=199 Identities=17% Similarity=0.105 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHHhcC--CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED 96 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 96 (409)
+.++.+.-++.+.+.|+|.||+=. ...++ .+.++.+++.. +.++..-.|....+=. ...+ .-++.+++
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~----~~~~~a~~ 89 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGW---PGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVK-AEED----PNLQALLE 89 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC---CcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCC-ccch----HHHHHHHh
Confidence 345555556666678999999822 11122 22344443332 5667777776544322 1111 34667888
Q ss_pred cCCcEEEEeccCcc------------ch---HHHHH-hccCCCcEEEEec-cCCCCCC-CHhHHHHHHHHHHHcCCCEEE
Q 015310 97 LGADYVDFELKVAS------------NI---LGKQY-SSHQSGTRFIVSC-NLDCETP-SEEDLGYLVSRMQATGADIIK 158 (409)
Q Consensus 97 ~g~dyvDiEl~~~~------------~~---~~~l~-~~~~~~~kiI~S~-H~f~~tp-~~~~l~~~~~~~~~~gaDivK 158 (409)
.|++.|.+-....+ +. +.+.+ .++..+.++.++. |.|+.+. +.+.+.++++++.+.|+|.+-
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~ 169 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLV 169 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 99999888544321 11 12233 3556677776633 3334433 356688999999999999887
Q ss_pred EEeec--CCHhHHHHHHHHhccC-C-CCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhh
Q 015310 159 LVFSV--NDITEIARIFQLLSHC-Q-VPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQT 228 (409)
Q Consensus 159 ia~~~--~~~~D~~~ll~~~~~~-~-~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~ 228 (409)
++=+. .++.++.++++.+.+. + .|+=. ++||- ..=+..-.-|..+.-+++.. +--.|+.+++++...
T Consensus 170 l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~---An~laA~~aGa~~id~s~~GlGeraGn~~~e~~~~~ 246 (273)
T cd07941 170 LCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAV---ANSLAAVEAGATQVQGTINGYGERCGNANLCSIIPN 246 (273)
T ss_pred EecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHH---HHHHHHHHcCCCEEEEeccccccccccccHHHHHHH
Confidence 77332 3577777777765432 2 33321 12222 22222222344333333332 244788888888776
Q ss_pred hh
Q 015310 229 YK 230 (409)
Q Consensus 229 ~~ 230 (409)
++
T Consensus 247 L~ 248 (273)
T cd07941 247 LQ 248 (273)
T ss_pred HH
Confidence 65
No 292
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.91 E-value=2.2 Score=41.17 Aligned_cols=143 Identities=17% Similarity=0.283 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEE-----EecCCCCCCChhHHHHH-------HhcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEI-----RLDCINNFQPGKDLEII-------LTKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vEl-----RlD~l~~~~~~~~l~~l-------~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 88 (409)
+.++++..+++..+.|||+|.+ |.+. ...++.+++.++ +...+.|+ .+ +..+-
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~-~~i~~~~E~~rl~~~v~~i~~~~~~pl--SI------------DT~~~ 86 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGA-DPVSVEEELERVIPVLEALRGELDVLI--SV------------DTFRA 86 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCcE--EE------------eCCCH
Confidence 5688888888888999999988 4432 122223334333 22224553 32 23455
Q ss_pred HHHHHHHHcCCcEEE-EeccCc-cchHHHHHhccCCCcEEEEeccCCCCCCCH-----------hH----HHHHHHHHHH
Q 015310 89 EALHLAEDLGADYVD-FELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSE-----------ED----LGYLVSRMQA 151 (409)
Q Consensus 89 ~ll~~~~~~g~dyvD-iEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~-----------~~----l~~~~~~~~~ 151 (409)
+.++++++.|+++|- |..... ++..+ ++ ++.+..+|+ .|+ .++|.. ++ +.+.++.+.+
T Consensus 87 ~v~e~al~~G~~iINdisg~~~~~~~~~-l~--~~~~~~vV~-m~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSDDPAMLE-VA--AEYGAPLVL-MHM-RGTPKTMQENPYYEDVVDEVLSFLEARLEAAES 161 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCChHHHH-HH--HHcCCCEEE-ECC-CCCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 788899999988764 665543 22322 22 345778888 454 455532 22 4566677888
Q ss_pred cCCCEEEEEe-----ecCCHhHHHHHHHHhc---cCCCCE
Q 015310 152 TGADIIKLVF-----SVNDITEIARIFQLLS---HCQVPI 183 (409)
Q Consensus 152 ~gaDivKia~-----~~~~~~D~~~ll~~~~---~~~~p~ 183 (409)
.|-+-=||.. +.++.+.+..+++.+. +.+.|+
T Consensus 162 ~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi 201 (257)
T cd00739 162 AGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV 201 (257)
T ss_pred cCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE
Confidence 8864223332 4456666666665543 335664
No 293
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=88.88 E-value=39 Score=36.70 Aligned_cols=210 Identities=13% Similarity=0.072 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 015310 22 VEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93 (409)
Q Consensus 22 ~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 93 (409)
.++++.-+...-+.|...+|.= +|- +...+|.+.+..+++.. +.|+-.-+|..+==|..+.+++-....++.
T Consensus 25 t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~ 104 (596)
T PRK14042 25 TEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKL 104 (596)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHH
Confidence 3566666666666788888853 442 11225566777777554 778888888777777777788777788999
Q ss_pred HHHcCCcEEEE--eccCccchHHHHHhccCCCcEEEEe--ccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015310 94 AEDLGADYVDF--ELKVASNILGKQYSSHQSGTRFIVS--CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DIT 167 (409)
Q Consensus 94 ~~~~g~dyvDi--El~~~~~~~~~l~~~~~~~~kiI~S--~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~ 167 (409)
+.+.|.|.+=| .++..+.....+..+++.|..+.++ |-. +..=+.+.+.+..+++.+.|||.+=|+=|+- ++.
T Consensus 105 a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~ 183 (596)
T PRK14042 105 AVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT-SPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPT 183 (596)
T ss_pred HHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC-CCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHH
Confidence 99999887665 2222222222222344455555554 422 1111457799999999999999988886665 588
Q ss_pred HHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310 168 EIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE 232 (409)
Q Consensus 168 D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~ 232 (409)
++.++.+.+.+. +.|+-.= +.--+|..+=+..-.-|....-+++.. +--+||++.+++...++..
T Consensus 184 ~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~ 252 (596)
T PRK14042 184 VTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDT 252 (596)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhc
Confidence 888888876543 5554211 222233344444444454443333332 2336999999988777643
No 294
>PLN02740 Alcohol dehydrogenase-like
Probab=88.88 E-value=0.71 Score=46.66 Aligned_cols=40 Identities=38% Similarity=0.528 Sum_probs=35.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|++++|+|+|+.|.+++..+..+|+ +|++++++.+|.+.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~ 238 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEK 238 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHH
Confidence 47899999999999999999999999 79999988777554
No 295
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=88.84 E-value=0.62 Score=47.55 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+.||++.|+|.|.+|+.++..|..+|++|.++++..
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~ 149 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR 149 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence 56889999999999999999999999999999998753
No 296
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=88.79 E-value=0.48 Score=47.99 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=33.0
Q ss_pred EEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.|.|+|||-+|.|.+|+|.+.|-+|.|+.||...-+.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdR 83 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDR 83 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecccccchH
Confidence 4999999999999999999999999999999665443
No 297
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.75 E-value=0.91 Score=42.40 Aligned_cols=41 Identities=39% Similarity=0.462 Sum_probs=35.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
++.+++|.|+|+++++++..+...|.+|+++.++.++.+.+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~ 174 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELA 174 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 57899999999999999988888999999999987765543
No 298
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.72 E-value=0.68 Score=46.01 Aligned_cols=36 Identities=36% Similarity=0.444 Sum_probs=33.6
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
.+.||++.|+|.|..|++++.-|.-+|++|..++|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 578999999999999999999999999999999986
No 299
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=88.71 E-value=16 Score=33.85 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=51.6
Q ss_pred EEEeeccCCHHHHHHHHHHHHhcCCCEEE---EEecCCCCCCChhHHHHHH--hcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVE---IRLDCINNFQPGKDLEIIL--TKKPLPVLIVYRPKWAGGLYEGDEHKR 87 (409)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~aD~vE---lRlD~l~~~~~~~~l~~l~--~~~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (409)
+..|..+-+...+..-++ ..|+|++- ++.+-+..... ....+. ...+.|+++.+.. .+.++.
T Consensus 3 ~~aPm~~~~~~~fR~l~~---~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~qi~g--------~~~~~~ 69 (231)
T cd02801 3 ILAPMVGVTDLPFRLLCR---RYGADLVYTEMISAKALLRGNR--KRLRLLTRNPEERPLIVQLGG--------SDPETL 69 (231)
T ss_pred EeCCCCCCcCHHHHHHHH---HHCCCEEEecCEEEhhhhhcCH--HHHHhhccCccCCCEEEEEcC--------CCHHHH
Confidence 445666655444444333 34688886 56655443222 112222 2348899998852 256777
Q ss_pred HHHHHHHHHcCCcEEEEeccCc
Q 015310 88 LEALHLAEDLGADYVDFELKVA 109 (409)
Q Consensus 88 ~~ll~~~~~~g~dyvDiEl~~~ 109 (409)
.+.-+.+.+.|+|.|||-...+
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p 91 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCP 91 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCC
Confidence 8888888888999999977653
No 300
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.70 E-value=0.65 Score=51.33 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=34.2
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL 405 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~ 405 (409)
++|.|||||-+|+.|++.++..|++|++++++++..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~ 350 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALD 350 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 6899999999999999999999999999999987654
No 301
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=88.66 E-value=0.79 Score=45.70 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=34.7
Q ss_pred CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la 408 (409)
.+++.|+|+|..|++-+.++... .. +|+|+||+.++++.++
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~ 170 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFA 170 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH
Confidence 47899999999999988777654 35 8999999999998764
No 302
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.62 E-value=0.8 Score=46.04 Aligned_cols=39 Identities=36% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
+.+|+|+|+|..|..++..+...|+ +|++++++++|.+.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~ 208 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLEL 208 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence 3489999999999999888999998 89999999888653
No 303
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.62 E-value=0.73 Score=45.67 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=34.1
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+.||++.|+|-|..||+++.-+.-+|++|..++|+.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~ 178 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG 178 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence 5789999999999999999999999999999999864
No 304
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.58 E-value=0.92 Score=44.92 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=33.7
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL 405 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~ 405 (409)
.|.+++|.|+|+.+.+++..+...|++|+++.++.+|.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~ 203 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARR 203 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 478999999999999988888888998888888877754
No 305
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=88.52 E-value=25 Score=34.12 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEe----cCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310 22 VEQVLSNMYQAKAEGADVVEIRL----DCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL 97 (409)
Q Consensus 22 ~~e~~~~~~~~~~~~aD~vElRl----D~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 97 (409)
.++-++-++.+.+.|.|.||.=- ..++...+.+++.+.+....-.-+..++. .. +=++.+++.
T Consensus 19 ~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~---------~~----~dv~~A~~~ 85 (274)
T cd07938 19 TEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVP---------NL----RGAERALAA 85 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECC---------CH----HHHHHHHHc
Confidence 34444455566678999999861 11221222222222221111122333331 11 125788899
Q ss_pred CCcEEEEeccCccc---------------hHHH-HHhccCCCcEEEE------eccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310 98 GADYVDFELKVASN---------------ILGK-QYSSHQSGTRFIV------SCNLDCETPSEEDLGYLVSRMQATGAD 155 (409)
Q Consensus 98 g~dyvDiEl~~~~~---------------~~~~-l~~~~~~~~kiI~------S~H~f~~tp~~~~l~~~~~~~~~~gaD 155 (409)
|++.|.+-....+. ...+ +..+++.+.++.+ +..+...+ +.+.+.+.++++.+.|+|
T Consensus 86 g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~~~~~Ga~ 164 (274)
T cd07938 86 GVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAERLLDLGCD 164 (274)
T ss_pred CcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHHHHHcCCC
Confidence 99999988766531 1111 2235566766643 22222222 467899999999999999
Q ss_pred EEEEEeecC--CHhHHHHHHHHhcc
Q 015310 156 IIKLVFSVN--DITEIARIFQLLSH 178 (409)
Q Consensus 156 ivKia~~~~--~~~D~~~ll~~~~~ 178 (409)
.+.++=+.- ++.++.++.+.+.+
T Consensus 165 ~i~l~DT~G~~~P~~v~~lv~~l~~ 189 (274)
T cd07938 165 EISLGDTIGVATPAQVRRLLEAVLE 189 (274)
T ss_pred EEEECCCCCccCHHHHHHHHHHHHH
Confidence 999985543 57777777776543
No 306
>PRK09414 glutamate dehydrogenase; Provisional
Probab=88.46 E-value=1.4 Score=45.84 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEE-e
Q 015310 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF-D 398 (409)
Q Consensus 337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~-n 398 (409)
.-++|...+++..+.+. +.+++|++++|.|-|.+|+.++..|.+.|++|+.+ +
T Consensus 210 aTg~Gv~~~~~~~~~~~---------~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 210 ATGYGLVYFAEEMLKAR---------GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cccHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 33467777777766532 25689999999999999999999999999976544 5
No 307
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=88.45 E-value=0.93 Score=44.47 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=38.3
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
.+++=-||-|-+|.+.+..|.+.|++|+|+||+.++.+++.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~ 75 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ 75 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH
Confidence 46788999999999999999999999999999999998875
No 308
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=88.43 E-value=11 Score=38.16 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=70.7
Q ss_pred HHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccCcc------chHHH---HH-hc-cCCC
Q 015310 56 LEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVAS------NILGK---QY-SS-HQSG 123 (409)
Q Consensus 56 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv-DiEl~~~~------~~~~~---l~-~~-~~~~ 123 (409)
+.+++...+.|++-|.=.. . |. +.+++-++....+.-|+|.| |-|.-... +.++. .+ .+ .+.+
T Consensus 117 ~R~~lgv~~rPl~~tiiKP-~-GL---~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG 191 (364)
T cd08210 117 LRALLGIPERPLLCSALKP-Q-GL---SAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETG 191 (364)
T ss_pred HHHHhCCCCCceEEEEecc-c-cC---CHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3344444588999988543 4 54 78899999999999899998 77754432 22211 12 11 2334
Q ss_pred cEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHH
Q 015310 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEI 169 (409)
Q Consensus 124 ~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~ 169 (409)
.+++....- |-+.+|+.++.+.+++.|++.+-+.....-.+-+
T Consensus 192 ~~~~y~~Ni---ta~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~ 234 (364)
T cd08210 192 GRTLYAPNV---TGPPTQLLERARFAKEAGAGGVLIAPGLTGLDTF 234 (364)
T ss_pred CcceEEEec---CCCHHHHHHHHHHHHHcCCCEEEeecccchHHHH
Confidence 455555443 2224699999999999999999998887766633
No 309
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.40 E-value=0.77 Score=46.79 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+.||++.|+|.|.+|+.++.-|..+|++|.++++.
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~ 148 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP 148 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc
Confidence 5789999999999999999999999999999999874
No 310
>PRK14852 hypothetical protein; Provisional
Probab=88.35 E-value=0.5 Score=53.37 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=65.3
Q ss_pred cEEEEeccCCCCC----CCHhH-HHHHHHHHHHcC---CCEEEEEeecCCHhHH--HHHHHHh------ccCCCCEEEEE
Q 015310 124 TRFIVSCNLDCET----PSEED-LGYLVSRMQATG---ADIIKLVFSVNDITEI--ARIFQLL------SHCQVPIIAYS 187 (409)
Q Consensus 124 ~kiI~S~H~f~~t----p~~~~-l~~~~~~~~~~g---aDivKia~~~~~~~D~--~~ll~~~------~~~~~p~i~~~ 187 (409)
-.+|.|.|..-.+ ++.++ -...++...+.| |++-|+|+-+....-. .-++++. ...+-=+|+++
T Consensus 84 ~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~Vn 163 (989)
T PRK14852 84 HDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVN 163 (989)
T ss_pred CcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4566666643221 22332 234456666667 5788888754433211 1122221 23344577777
Q ss_pred cCccchhhhhhc-CCCCCccccccCCCCCCCCCCCHHHHHhhh
Q 015310 188 VGERGLVSQLLS-PKFNGALVYGSLKGTPVLGLPTVESLRQTY 229 (409)
Q Consensus 188 MG~~G~~SRi~~-~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~ 229 (409)
==..+-+.|+++ ..+|..=+|..++.|..--.+++.++.+.+
T Consensus 164 PkH~~FY~r~l~f~~ig~~r~~p~VnaPAvll~~dl~~~~~~~ 206 (989)
T PRK14852 164 PKHVKFYTDIFLFKPFGEVRHYDTVDAPAVALRIDLHEAMDEL 206 (989)
T ss_pred cchHHHHHHHhCCccccccccCCCCCcchhheecCHHHHHHHH
Confidence 777889999998 788998888888766556778888877665
No 311
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=88.34 E-value=3.5 Score=39.70 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=60.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE--eccCcc--------c--hHHHHHhccCCCcEEEEeccCCCCCCCHh
Q 015310 73 PKWAGGLYEGDEHKRLEALHLAEDLGADYVDF--ELKVAS--------N--ILGKQYSSHQSGTRFIVSCNLDCETPSEE 140 (409)
Q Consensus 73 ~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi--El~~~~--------~--~~~~l~~~~~~~~kiI~S~H~f~~tp~~~ 140 (409)
+-.+||.+. +.++-.+..+..++.|+++||| |-..+. + .+..++..-+..+.+.+|.|. ++.+
T Consensus 12 SF~dg~~~~-~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT----~~~~ 86 (257)
T TIGR01496 12 SFSDGGRFL-SVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT----YRAE 86 (257)
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC----CCHH
Confidence 446788874 4455555666667899999999 333221 1 122233221233356788884 3444
Q ss_pred HHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015310 141 DLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 189 (409)
Q Consensus 141 ~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG 189 (409)
.+.+ +.+.|+|++==+..-+ .++. +.+..+.+.|+|.|.+.
T Consensus 87 vi~~----al~~G~~iINsis~~~-~~~~---~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 87 VARA----ALEAGADIINDVSGGQ-DPAM---LEVAAEYGVPLVLMHMR 127 (257)
T ss_pred HHHH----HHHcCCCEEEECCCCC-Cchh---HHHHHHcCCcEEEEeCC
Confidence 4444 4445999877655443 3334 44456678899998874
No 312
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.34 E-value=0.99 Score=44.10 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+.+++|+|+|+.+++++..+..+|++|+++.++.++.+.+
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA 202 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46789999999999999888899999999999998876544
No 313
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=88.30 E-value=0.88 Score=48.43 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+.||++.|+|-|.+|++++..|..+|++|+.++|.
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 170 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY 170 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 4578999999999999999999999999999999984
No 314
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=88.30 E-value=0.78 Score=46.03 Aligned_cols=45 Identities=36% Similarity=0.514 Sum_probs=40.8
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
.-+.||.++|.|-|-.||.++..|..+|++|.|..-++-+|-+-+
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~ 249 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA 249 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh
Confidence 457899999999999999999999999999999999998887654
No 315
>PLN02256 arogenate dehydrogenase
Probab=88.29 E-value=0.98 Score=44.64 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=32.7
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ 402 (409)
++.++.|+|.|.+|.+++.+|.+.|.+|++++|+..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~ 70 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY 70 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH
Confidence 567899999999999999999999989999999864
No 316
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.26 E-value=0.95 Score=44.68 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=35.3
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.|.+++|.|+ |+.|.+++..+..+|++|+.+.++.++.+.+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~ 192 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL 192 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5789999997 9999999988888999988888888876654
No 317
>PLN02463 lycopene beta cyclase
Probab=88.23 E-value=0.57 Score=48.86 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=30.2
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
-.++|+|+|.+|.++|..|++.|.+|.|+.+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 369999999999999999999999999998864
No 318
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=88.13 E-value=0.68 Score=48.70 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=31.8
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++++|+|+|.+|-+++..|.+.|.+|+|+.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46899999999999999999999999999998753
No 319
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=88.08 E-value=7.3 Score=36.95 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=53.4
Q ss_pred EeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc-------chHHHHHhccCC--CcEEEEeccCCCCCCCHh
Q 015310 70 VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS-------NILGKQYSSHQS--GTRFIVSCNLDCETPSEE 140 (409)
Q Consensus 70 T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~-------~~~~~l~~~~~~--~~kiI~S~H~f~~tp~~~ 140 (409)
|+|.-.|.-.+..+.++..++++.+.+.|+++|++=..... +..+.+....+. +.++.+ +. +..
T Consensus 4 tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~--l~---~~~-- 76 (265)
T cd03174 4 TLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQA--LV---RNR-- 76 (265)
T ss_pred CCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEE--Ec---cCc--
Confidence 66644443334568899999999999999999887654432 222222222222 344422 11 111
Q ss_pred HHHHHHHHHHHcCCCEEEEEeecC
Q 015310 141 DLGYLVSRMQATGADIIKLVFSVN 164 (409)
Q Consensus 141 ~l~~~~~~~~~~gaDivKia~~~~ 164 (409)
.+.++++.+.|.|.+.+.....
T Consensus 77 --~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 77 --EKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred --hhhHHHHHhCCcCEEEEEEecC
Confidence 5567888888999999998777
No 320
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=88.05 E-value=17 Score=36.53 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=88.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHH-HHhcCCCcEEEEecc----CCCCCCCCCCHHHHHHHHHH
Q 015310 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEI-ILTKKPLPVLIVYRP----KWAGGLYEGDEHKRLEALHL 93 (409)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~-l~~~~~~PiI~T~R~----~~eGG~~~~~~~~~~~ll~~ 93 (409)
...++++...+.+.+..++|.|= ++.. --+.. ..+..+.++|+++-. ....|. .+...-.--.+.
T Consensus 45 ~~~l~~~K~lv~~~l~~~asaIL-----ld~~---yG~~a~~~~~~~~GLil~~e~tg~d~t~~gr--~~~~~~~~sve~ 114 (340)
T PRK12858 45 YTDLVDFKLAVSEALTPYASAIL-----LDPE---YGLPAAKVRDPNCGLLLSYEKTGYDATAPGR--LPDLLDNWSVRR 114 (340)
T ss_pred hhhHHHHHHHHHHHHhhCCCEEE-----Eccc---cChhhhcccCCCCCeEEEecccccccCCCCC--CccccccccHHH
Confidence 34667777777777777888872 2210 00111 223357889988631 111121 222111112467
Q ss_pred HHHcCCcEEEEeccCccc-----------hHHHHH-hccCCCcEEEE---eccCCCCC--------CCHhHHHHHHHHHH
Q 015310 94 AEDLGADYVDFELKVASN-----------ILGKQY-SSHQSGTRFIV---SCNLDCET--------PSEEDLGYLVSRMQ 150 (409)
Q Consensus 94 ~~~~g~dyvDiEl~~~~~-----------~~~~l~-~~~~~~~kiI~---S~H~f~~t--------p~~~~l~~~~~~~~ 150 (409)
+.++|+|.|=+=+....+ .+.++. ..++.+..+++ +|=.-... -..+-+....+...
T Consensus 115 a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~ 194 (340)
T PRK12858 115 IKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFS 194 (340)
T ss_pred HHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHh
Confidence 889999977665443211 233444 35677888777 55321111 11234666677777
Q ss_pred H--cCCCEEEEEeecC--------------CHhHHHHHHHH-hccCCCCEEEEEcCc
Q 015310 151 A--TGADIIKLVFSVN--------------DITEIARIFQL-LSHCQVPIIAYSVGE 190 (409)
Q Consensus 151 ~--~gaDivKia~~~~--------------~~~D~~~ll~~-~~~~~~p~i~~~MG~ 190 (409)
+ +|+||+|+-+..+ +.++....++- ...+..|+|..+=|.
T Consensus 195 ~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 195 KPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV 251 (340)
T ss_pred hhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence 4 9999999987644 44555454433 333577887776664
No 321
>PLN02985 squalene monooxygenase
Probab=88.02 E-value=0.64 Score=49.33 Aligned_cols=34 Identities=32% Similarity=0.573 Sum_probs=31.2
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
...|+|+|||-+|.+++.+|++.|.+|+|+.|+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3479999999999999999999999999999974
No 322
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.02 E-value=18 Score=35.45 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=56.6
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhc---CCCEEEEEecCCCC-----C-CChhHHHH----HHhcCCCcEEEEeccCC
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAE---GADVVEIRLDCINN-----F-QPGKDLEI----ILTKKPLPVLIVYRPKW 75 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~---~aD~vElRlD~l~~-----~-~~~~~l~~----l~~~~~~PiI~T~R~~~ 75 (409)
++| +.++|.+. .+|+.+.++++... ++|++|+=+=+=.. . .+.+.+.+ +++..++|+++-+|...
T Consensus 91 ~~p-vivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~ 168 (294)
T cd04741 91 AKP-FFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT 168 (294)
T ss_pred CCe-EEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 345 56999998 99998888877654 69999998865321 1 11223333 33446899999998742
Q ss_pred CCCCCCCCHHHHHHHHHHHHHc--CCcEEE
Q 015310 76 AGGLYEGDEHKRLEALHLAEDL--GADYVD 103 (409)
Q Consensus 76 eGG~~~~~~~~~~~ll~~~~~~--g~dyvD 103 (409)
+.++..++.+.+.+. |++.|-
T Consensus 169 -------~~~~~~~~a~~l~~~~~G~~gi~ 191 (294)
T cd04741 169 -------DPAQFDTLAEALNAFACPISFIT 191 (294)
T ss_pred -------CHHHHHHHHHHHhccccCCcEEE
Confidence 444556666666666 666554
No 323
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.02 E-value=0.98 Score=45.42 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=35.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|.+++|.|+|+.|.+++..+..+|+ +|++++++.+|.+.
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~ 225 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFEL 225 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence 47899999999999999998999999 89999988877654
No 324
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.01 E-value=0.77 Score=50.72 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=35.0
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
-++|.|||||-+|+.|++.++..|.+|++++++.+..+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~ 351 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDL 351 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 368999999999999999999999999999999876543
No 325
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.91 E-value=0.97 Score=44.81 Aligned_cols=39 Identities=33% Similarity=0.373 Sum_probs=34.5
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL 405 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~ 405 (409)
.|.+|||+|||..|......+.-.|+ +|.+++-.+.|.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle 208 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLE 208 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHH
Confidence 47899999999999999999999999 9999988766643
No 326
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=87.85 E-value=0.63 Score=50.87 Aligned_cols=35 Identities=31% Similarity=0.561 Sum_probs=32.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
+..+|+|+|+|-+|.+.|.+|.+.|++++|+.|..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34679999999999999999999999999999975
No 327
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=87.84 E-value=2 Score=41.07 Aligned_cols=49 Identities=33% Similarity=0.407 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE
Q 015310 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV 395 (409)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~ 395 (409)
++|...+++..+...+ ..+++|++++|-|.|.+|+.++..|.++|++|.
T Consensus 11 g~GV~~~~~~~~~~~~--------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv 59 (244)
T PF00208_consen 11 GYGVAYAIEAALEHLG--------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVV 59 (244)
T ss_dssp HHHHHHHHHHHHHHTT--------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHcC--------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEE
Confidence 4677777777665322 135889999999999999999999999998644
No 328
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=87.75 E-value=1.2 Score=43.54 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhC----CC-------eEEEEeCC
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSR----GA-------RVVIFDID 400 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~----G~-------~i~v~nR~ 400 (409)
.+++..+++++|||.+|-+++.-|... |. +|++++|.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 567788999999999999998877665 76 69998875
No 329
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.73 E-value=0.92 Score=46.30 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
..++++++|.|+ |..|+.++..|.+.|.+|+++.|+.++
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 345789999997 889999999999999999999998754
No 330
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=87.73 E-value=6.2 Score=36.94 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=117.3
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR 87 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (409)
..|++=|.|-..+++++.+.++++... +|++|.--=++...-- +.++.+++. .+.+++.-..+-.-|+.
T Consensus 2 ~~p~LQvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG~-~aV~~lr~~~pd~~IvAD~Kt~D~G~~-------- 71 (217)
T COG0269 2 SPPLLQVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEGM-RAVRALRELFPDKIIVADLKTADAGAI-------- 71 (217)
T ss_pred CCcceEeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhhH-HHHHHHHHHCCCCeEEeeeeecchhHH--------
Confidence 467888999999999999999988666 9999987666654322 356666654 47888888877644332
Q ss_pred HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015310 88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (409)
Q Consensus 88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~ 166 (409)
..+++.+.|+|++-|=--.+.+-+...+ .+++.+..+.+=-- +.++ +.+..+..+++|.|++=+=.-
T Consensus 72 --e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~---~~~~---~~~~~~~l~~~gvd~~~~H~g---- 139 (217)
T COG0269 72 --EARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLI---GVWD---PEQRAKWLKELGVDQVILHRG---- 139 (217)
T ss_pred --HHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEee---cCCC---HHHHHHHHHHhCCCEEEEEec----
Confidence 2467888999998875444443333333 45556655544322 2222 344444454567766533221
Q ss_pred hHHHHHHHHhccCCCCEEEEE--cCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhccccccceEEeee
Q 015310 167 TEIARIFQLLSHCQVPIIAYS--VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLI 244 (409)
Q Consensus 167 ~D~~~ll~~~~~~~~p~i~~~--MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~i~~~~~~~~vi 244 (409)
-|.. ....+ -..+..+-++... |..+ +--|-++.+++..+... . ....++
T Consensus 140 ~D~q------------~~G~~~~~~~l~~ik~~~~~--g~~v--------AVaGGI~~~~i~~~~~~---~---~~ivIv 191 (217)
T COG0269 140 RDAQ------------AAGKSWGEDDLEKIKKLSDL--GAKV--------AVAGGITPEDIPLFKGI---G---ADIVIV 191 (217)
T ss_pred ccHh------------hcCCCccHHHHHHHHHhhcc--CceE--------EEecCCCHHHHHHHhcC---C---CCEEEE
Confidence 1110 00000 1122333344322 1111 33566899888866532 2 347899
Q ss_pred ccCCcccCCHH
Q 015310 245 SKPVGHSKGPI 255 (409)
Q Consensus 245 G~pi~hS~SP~ 255 (409)
|..|.+|..|.
T Consensus 192 GraIt~a~dp~ 202 (217)
T COG0269 192 GRAITGAKDPA 202 (217)
T ss_pred CchhcCCCCHH
Confidence 99999999997
No 331
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.67 E-value=21 Score=35.80 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccc--------------hHHHHHhccCC---CcE
Q 015310 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN--------------ILGKQYSSHQS---GTR 125 (409)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~--------------~~~~l~~~~~~---~~k 125 (409)
.++|+|+.+=. ........+.++|.++.+.+-+ ++|++++.+.++.. .++.++..... ...
T Consensus 136 ~~~pvivsI~~-~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~P 213 (344)
T PRK05286 136 RGIPLGINIGK-NKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVP 213 (344)
T ss_pred CCCcEEEEEec-CCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCc
Confidence 57899999831 1112223467899998888755 59999999877531 22222221110 144
Q ss_pred EEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310 126 FIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN 164 (409)
Q Consensus 126 iI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~ 164 (409)
|++-.-. . .+.+++.++.+.+.+.|+|-+-+.-+..
T Consensus 214 V~vKlsp-~--~~~~~~~~ia~~l~~~Gadgi~~~nt~~ 249 (344)
T PRK05286 214 LLVKIAP-D--LSDEELDDIADLALEHGIDGVIATNTTL 249 (344)
T ss_pred eEEEeCC-C--CCHHHHHHHHHHHHHhCCcEEEEeCCcc
Confidence 5554431 1 1234678888888888888887766543
No 332
>PRK06932 glycerate dehydrogenase; Provisional
Probab=87.67 E-value=0.83 Score=45.33 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=33.7
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+.||++.|+|-|..||+++.-|.-+|++|..++|..
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~ 180 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG 180 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence 5789999999999999999999999999998888863
No 333
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=87.63 E-value=0.7 Score=38.64 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=27.8
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
|++||+|.|..|.-++.++.++|++.++++.++++
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~ 37 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT 37 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc
Confidence 68999999999999999999999965555545443
No 334
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=0.73 Score=45.33 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=32.0
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~ 401 (409)
+.+.-|+|+|+||+|.-++--|.+-|+ +|.|++-++
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 457789999999999999999999999 999987653
No 335
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=87.60 E-value=25 Score=33.07 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----CC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCC
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----QP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEG 82 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~ 82 (409)
.+.+|.-||..-+...+.+++++..+.|+|++= +|-++.. .- ...++.+++.++.|+=+++=-.
T Consensus 2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH--~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~-------- 71 (220)
T COG0036 2 KMMKIAPSILSADFARLGEELKALEAAGADLIH--IDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVE-------- 71 (220)
T ss_pred CCceeeeehhhCCHhHHHHHHHHHHHcCCCEEE--EeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecC--------
Confidence 467889999999999999999998888999984 5666532 11 2467777776677776665321
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 015310 83 DEHKRLEALHLAEDLGADYVDFEL 106 (409)
Q Consensus 83 ~~~~~~~ll~~~~~~g~dyvDiEl 106 (409)
+++.|++ ..++.|++||-+=.
T Consensus 72 ~p~~~i~---~fa~agad~It~H~ 92 (220)
T COG0036 72 NPDRYIE---AFAKAGADIITFHA 92 (220)
T ss_pred CHHHHHH---HHHHhCCCEEEEEe
Confidence 3444443 44556666655433
No 336
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=87.57 E-value=24 Score=33.96 Aligned_cols=194 Identities=16% Similarity=0.143 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC-
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG- 98 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g- 98 (409)
+.++.+.-++...+.|.|.||.=.....+ .+.+.+..+.+. .+.++..-+|... +-++.+.+.+
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~~~~l~~~~~~~~~~~l~r~~~-------------~~v~~a~~~~~ 83 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASP-GDFEAVKRIAREVLNAEICGLARAVK-------------KDIDAAAEALK 83 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHhCCCCEEEEEccCCH-------------hhHHHHHHhCC
Confidence 44555555666667899999985322111 223444555442 3456665556431 2245566666
Q ss_pred ---CcEEEEeccCcc------------chHH---HHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310 99 ---ADYVDFELKVAS------------NILG---KQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (409)
Q Consensus 99 ---~dyvDiEl~~~~------------~~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 159 (409)
++.|.+=....+ +.++ +.+ .++..+.++..+.=+...+ +.+.+.+.++++.++|+|.+=+
T Consensus 84 ~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 84 PAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRT-DLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 888888654321 1112 222 3455677776665443333 3678999999999999998877
Q ss_pred EeecC--CHhHHHHHHHHhccC-C---CCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHh
Q 015310 160 VFSVN--DITEIARIFQLLSHC-Q---VPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQ 227 (409)
Q Consensus 160 a~~~~--~~~D~~~ll~~~~~~-~---~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~ 227 (409)
+=+.- ++.++..+++.+.+. + .|+-. ++|+-.-.+.=+ .-|..+.=+++.. +-+.|.++.+++..
T Consensus 163 ~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi---~aG~~~iD~s~~GlG~~aGN~~tE~lv~ 239 (268)
T cd07940 163 PDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAV---EAGARQVECTINGIGERAGNAALEEVVM 239 (268)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHH---HhCCCEEEEEeeccccccccccHHHHHH
Confidence 64443 588888888876553 2 34321 223222222222 2233333233322 24578888888876
Q ss_pred hhhhc
Q 015310 228 TYKVE 232 (409)
Q Consensus 228 ~~~~~ 232 (409)
.++..
T Consensus 240 ~L~~~ 244 (268)
T cd07940 240 ALKTR 244 (268)
T ss_pred HHHhc
Confidence 66543
No 337
>PRK07121 hypothetical protein; Validated
Probab=87.55 E-value=0.68 Score=48.66 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=30.3
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
...|||+|+|++|-+++..+++.|++|+|+.+..
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~ 53 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAA 53 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3569999999999999999999999999988653
No 338
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=87.52 E-value=0.6 Score=49.73 Aligned_cols=34 Identities=38% Similarity=0.487 Sum_probs=31.2
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
...|+|+|||.+|.+++..|.+.|++++|+.|..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3579999999999999999999999999999875
No 339
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.50 E-value=6.1 Score=39.46 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=57.5
Q ss_pred EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC------CCC----hhHHHHHHhcCCCcEEEEeccCCCCCCCCC
Q 015310 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN------FQP----GKDLEIILTKKPLPVLIVYRPKWAGGLYEG 82 (409)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~------~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~ 82 (409)
+.+.|.+.+.++....++.+.+.|+|++|+=+-+-.. .+. .+.++.+++..++|+++-++.. +
T Consensus 104 vi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~-----~-- 176 (334)
T PRK07565 104 VIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY-----F-- 176 (334)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC-----c--
Confidence 5689999999998888888877899999996543111 111 1233455556689999988742 1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 015310 83 DEHKRLEALHLAEDLGADYVDF 104 (409)
Q Consensus 83 ~~~~~~~ll~~~~~~g~dyvDi 104 (409)
.+..++.+.+.+.|+|+|.+
T Consensus 177 --~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 177 --SNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred --hhHHHHHHHHHHcCCCeEEE
Confidence 13446667777889999976
No 340
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=87.49 E-value=1.7 Score=44.72 Aligned_cols=57 Identities=32% Similarity=0.406 Sum_probs=42.6
Q ss_pred EEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEec-----------------hhHHHHHHHHHHhCCCeEEE
Q 015310 334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVI 396 (409)
Q Consensus 334 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGa-----------------GGaarai~~aL~~~G~~i~v 396 (409)
|---|..=++..+++.+. ..+++||++||-|+ |++|++++.+|...|++|++
T Consensus 165 gr~~~~~~I~~~~~~~~~-----------~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~ 233 (399)
T PRK05579 165 GRMAEPEEIVAAAERALS-----------PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL 233 (399)
T ss_pred CCCCCHHHHHHHHHHHhh-----------hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE
Confidence 334455555566655543 13578999999987 56999999999999999999
Q ss_pred EeCCh
Q 015310 397 FDIDF 401 (409)
Q Consensus 397 ~nR~~ 401 (409)
++++.
T Consensus 234 v~~~~ 238 (399)
T PRK05579 234 VSGPV 238 (399)
T ss_pred eCCCc
Confidence 98864
No 341
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.45 E-value=0.81 Score=44.81 Aligned_cols=43 Identities=30% Similarity=0.642 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 364 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 364 ~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.+.+|+.|||=|+| |.||+++..++++|+++.+++.+.+-..+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~e 77 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEE 77 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHH
Confidence 45678999999974 69999999999999999999988655443
No 342
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=87.37 E-value=18 Score=35.98 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEE--EE-EecCCCCCCChhHHHHHH-hcCCCcEEEEeccCCCCCCCCCCH
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVV--EI-RLDCINNFQPGKDLEIIL-TKKPLPVLIVYRPKWAGGLYEGDE 84 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~v--El-RlD~l~~~~~~~~l~~l~-~~~~~PiI~T~R~~~eGG~~~~~~ 84 (409)
+.|.+-.|+.+-+.-.+...++ +.|+|++ |. ....+...+. .....+. .....|+++-+- -.++
T Consensus 9 ~~~~~lAPM~g~td~~fR~l~~---~~g~~~~~temvs~~~~~~~~~-~~~~~~~~~~~~~~~~vQl~--------g~~~ 76 (321)
T PRK10415 9 RNRLIAAPMAGITDRPFRTLCY---EMGAGLTVSEMMSSNPQVWESD-KSRLRMVHIDEPGIRTVQIA--------GSDP 76 (321)
T ss_pred CCCEEecCCCCCCcHHHHHHHH---HHCCCEEEEccEEcchhhhcCH-hHHHHhccCccCCCEEEEEe--------CCCH
Confidence 4477888998888776665554 4588864 42 2211111111 1111111 122456666652 1256
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccCcc
Q 015310 85 HKRLEALHLAEDLGADYVDFELKVAS 110 (409)
Q Consensus 85 ~~~~~ll~~~~~~g~dyvDiEl~~~~ 110 (409)
++..+..+.+.+.|+|.|||-+.++.
T Consensus 77 ~~~~~aa~~~~~~g~d~IdlN~gCP~ 102 (321)
T PRK10415 77 KEMADAARINVESGAQIIDINMGCPA 102 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCH
Confidence 77777777777789999999999885
No 343
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.37 E-value=1.1 Score=44.65 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=35.3
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l 407 (409)
.|++++|.|+|+.|.+++..+...|+ +|++++++.+|.+.+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 47899999999999999998999999 699999988776543
No 344
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=87.29 E-value=1.2 Score=44.70 Aligned_cols=40 Identities=35% Similarity=0.521 Sum_probs=35.4
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|.+++|+|+|+.|.+++..+..+|+ +|+++.++.+|.+.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~ 226 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFEL 226 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 47899999999999999999999999 79999998887654
No 345
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=87.24 E-value=21 Score=35.00 Aligned_cols=80 Identities=19% Similarity=0.056 Sum_probs=56.0
Q ss_pred EEEeeccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCC--CChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310 13 ICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNF--QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE 89 (409)
Q Consensus 13 icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ 89 (409)
+.+.|... +.++....++.+...|+|.+++-+|+.... ...+.++.+++..+.|+++-.. .+. +
T Consensus 118 ~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v---------~s~----~ 184 (299)
T cd02809 118 RWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI---------LTP----E 184 (299)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec---------CCH----H
Confidence 34555544 677777777777778999999999987521 1124677777777899998743 232 2
Q ss_pred HHHHHHHcCCcEEEEe
Q 015310 90 ALHLAEDLGADYVDFE 105 (409)
Q Consensus 90 ll~~~~~~g~dyvDiE 105 (409)
..+.+.+.|+|+|++.
T Consensus 185 ~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 185 DALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHCCCCEEEEc
Confidence 3567778999999986
No 346
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=87.19 E-value=31 Score=33.73 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEE-e---cCCCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 015310 22 VEQVLSNMYQAKAEGADVVEIR-L---DCINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED 96 (409)
Q Consensus 22 ~~e~~~~~~~~~~~~aD~vElR-l---D~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 96 (409)
.++-++-++...+.|.|.+|.= . ++++...+ .+.+..+.+..+..+. .++. . .+=++++++
T Consensus 25 ~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~-~l~~---------~----~~~ie~A~~ 90 (287)
T PRK05692 25 TADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYA-ALTP---------N----LKGLEAALA 90 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEE-EEec---------C----HHHHHHHHH
Confidence 3444555566667899999985 1 11221111 2233344322222332 2221 1 122367888
Q ss_pred cCCcEEEEeccCccc------------h---HHHHH-hccCCCcEEE--Eec----cCCCCCCCHhHHHHHHHHHHHcCC
Q 015310 97 LGADYVDFELKVASN------------I---LGKQY-SSHQSGTRFI--VSC----NLDCETPSEEDLGYLVSRMQATGA 154 (409)
Q Consensus 97 ~g~dyvDiEl~~~~~------------~---~~~l~-~~~~~~~kiI--~S~----H~f~~tp~~~~l~~~~~~~~~~ga 154 (409)
.|++.|.+-+...+. . +.+.+ .+++.+.++. +|+ .+...+ +.+.+.++.+++.+.|+
T Consensus 91 ~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~ 169 (287)
T PRK05692 91 AGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAERLFALGC 169 (287)
T ss_pred cCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHHHHHHcCC
Confidence 999998887666431 1 12233 3556677765 232 221122 35789999999999999
Q ss_pred CEEEEEeecC--CHhHHHHHHHHhccC-C-CCEEEEEcCcc--chhhhhhcCCCCCcccccc---CCC-CCCC---CCCC
Q 015310 155 DIIKLVFSVN--DITEIARIFQLLSHC-Q-VPIIAYSVGER--GLVSQLLSPKFNGALVYGS---LKG-TPVL---GLPT 221 (409)
Q Consensus 155 DivKia~~~~--~~~D~~~ll~~~~~~-~-~p~i~~~MG~~--G~~SRi~~~~~Gs~ltf~~---l~~-~sAP---GQ~~ 221 (409)
|.+-++=+.- ++.++.++++.+.+. + .|+-.=+=-.. +...=+..-.-|..+.-++ +++ |-|| |+.+
T Consensus 170 d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~ 249 (287)
T PRK05692 170 YEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGASGNVA 249 (287)
T ss_pred cEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCcccccc
Confidence 9988875443 578888888776543 2 44432111111 2222222223333332233 233 3444 5888
Q ss_pred HHHHHhhhhh
Q 015310 222 VESLRQTYKV 231 (409)
Q Consensus 222 ~~~l~~~~~~ 231 (409)
.+++...++.
T Consensus 250 ~E~lv~~L~~ 259 (287)
T PRK05692 250 TEDVLYMLHG 259 (287)
T ss_pred HHHHHHHHHh
Confidence 8888776653
No 347
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=87.19 E-value=4.1 Score=39.89 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=57.2
Q ss_pred EEEeeccCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCC-------CCh----hHHHHHHhcCCCcEEEEeccCCCCCC
Q 015310 13 ICAPLMAQSVEQVLSNMYQAKAE--GADVVEIRLDCINNF-------QPG----KDLEIILTKKPLPVLIVYRPKWAGGL 79 (409)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~--~aD~vElRlD~l~~~-------~~~----~~l~~l~~~~~~PiI~T~R~~~eGG~ 79 (409)
+.++|.+.+.+++...++.+.+. ++|.+|+=+=+=... .+. +.+..+++..++|+.+-+|.
T Consensus 93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~------ 166 (300)
T TIGR01037 93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP------ 166 (300)
T ss_pred EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC------
Confidence 66999999999999888887554 399999976542110 111 23334445557898887763
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 80 YEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
+.++-.++.+.+.+.|+|+|.+-
T Consensus 167 ---~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 167 ---NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ---ChhhHHHHHHHHHHcCCCEEEEE
Confidence 22345667777888999999873
No 348
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.16 E-value=1.1 Score=44.05 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=34.5
Q ss_pred CCEEEEEec-hhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310 368 GRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL 407 (409)
Q Consensus 368 ~~~vlvlGa-GGaarai~~aL~~~G~-~i~v~nR~~~ka~~l 407 (409)
+.+++|.|+ |+.|.+++..+..+|+ +|+++.++.++.+.+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~ 196 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLL 196 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 379999997 9999999988888999 899999988876654
No 349
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=87.11 E-value=10 Score=37.99 Aligned_cols=106 Identities=6% Similarity=0.058 Sum_probs=67.8
Q ss_pred EEeccCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEE---------ecc--C----ccchHHHHHhccCCCcEEEEec
Q 015310 69 IVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDF---------ELK--V----ASNILGKQYSSHQSGTRFIVSC 130 (409)
Q Consensus 69 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~dyvDi---------El~--~----~~~~~~~l~~~~~~~~kiI~S~ 130 (409)
.|+| +|++ +..+.++..++.+.+.+.|+++|.+ .+. . +.+.++.+... .+++++.+=.
T Consensus 9 ~TLR---DG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll 84 (337)
T PRK08195 9 VTLR---DGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALL 84 (337)
T ss_pred CCCC---CcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEe
Confidence 4566 5654 4567899999999999999999888 221 1 12344444322 2456654311
Q ss_pred cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEE
Q 015310 131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPII 184 (409)
Q Consensus 131 H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i 184 (409)
. |....+ +-++.+.+.|.|++++++..+..+......+..++....+.
T Consensus 85 ~-----pg~~~~-~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~ 132 (337)
T PRK08195 85 L-----PGIGTV-DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTV 132 (337)
T ss_pred c-----cCcccH-HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEE
Confidence 1 222222 34688888999999999988877766667776666554443
No 350
>PLN02572 UDP-sulfoquinovose synthase
Probab=87.04 E-value=1.1 Score=46.50 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC
Q 015310 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR 399 (409)
..++++++||.|+ |+.|+.++..|.+.|++|++++|
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 4567899999996 88999999999999999998764
No 351
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.01 E-value=1.1 Score=47.65 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+.||++.|+|.|..|++++..|..+|++|+.++|+
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 172 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPY 172 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 3478999999999999999999999999999999985
No 352
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.95 E-value=1.3 Score=44.32 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=34.9
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.|.+++|.|+ |+.|.+++..++.+|++|+.+.++.++.+.+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~ 199 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL 199 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 4789999998 9999999988888999988888888776543
No 353
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=86.93 E-value=31 Score=33.42 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=34.2
Q ss_pred CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC
Q 015310 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP 52 (409)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~ 52 (409)
...--++.-.++.+..++.++.+.+.|||++|+=+-+-+..-+
T Consensus 18 a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvAD 60 (265)
T COG0159 18 ALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVAD 60 (265)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCcc
Confidence 3444567777899999999998889999999999987765533
No 354
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=86.85 E-value=1.1 Score=45.11 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=31.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
.|++++|.|+|+.|.+++..++.+|++++++..+.++
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~ 219 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNK 219 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence 4789999999999999999999999987776665544
No 355
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=86.84 E-value=0.74 Score=48.67 Aligned_cols=33 Identities=39% Similarity=0.482 Sum_probs=30.0
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..|+|||+|++|-+++..+++.|++|.|+.+..
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999998764
No 356
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.73 E-value=1.2 Score=44.79 Aligned_cols=40 Identities=33% Similarity=0.567 Sum_probs=34.8
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|++++|.|+|+.|.+++..+...|+ +|++++++++|.+-
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~ 231 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLAL 231 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH
Confidence 47899999999999999988889999 79999998877653
No 357
>PRK12999 pyruvate carboxylase; Reviewed
Probab=86.69 E-value=62 Score=38.00 Aligned_cols=209 Identities=12% Similarity=0.085 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhc--CCCEEEEEe----cC---CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310 22 VEQVLSNMYQAKAE--GADVVEIRL----DC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (409)
Q Consensus 22 ~~e~~~~~~~~~~~--~aD~vElRl----D~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (409)
.+|++.-++..... |.+.+|.=- |. +...++.+.+..+++.. +.|+-.-+|..+==|....++.-..+.+
T Consensus 554 ~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i 633 (1146)
T PRK12999 554 TKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFV 633 (1146)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHH
Confidence 45566666666666 999999753 21 12224556777777543 7788888887665565555666677789
Q ss_pred HHHHHcCCcEEEEeccCcc-chHHHHH-hccCCC--cEEEEecc----CCCCCC-CHhHHHHHHHHHHHcCCCEEEEEee
Q 015310 92 HLAEDLGADYVDFELKVAS-NILGKQY-SSHQSG--TRFIVSCN----LDCETP-SEEDLGYLVSRMQATGADIIKLVFS 162 (409)
Q Consensus 92 ~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~--~kiI~S~H----~f~~tp-~~~~l~~~~~~~~~~gaDivKia~~ 162 (409)
+.+.+.|+|.+-|=..... +.++..+ ..++.+ ..+-+||- |...+. +.+.+.++.+++.+.|||++-|+=|
T Consensus 634 ~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt 713 (1146)
T PRK12999 634 REAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDM 713 (1146)
T ss_pred HHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 9999999999877433322 1111112 223334 45667765 333332 4466889999999999999988866
Q ss_pred cC--CHhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310 163 VN--DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (409)
Q Consensus 163 ~~--~~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~ 230 (409)
.- ++.++.++.+.+++. +.|+=.= +.--++..+=+..-.-|..+.=+++.. +--.||++++++...++
T Consensus 714 ~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~ 787 (1146)
T PRK12999 714 AGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALE 787 (1146)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHH
Confidence 65 577887777776533 4453211 112223333333333444333333322 22367777777766655
No 358
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=86.63 E-value=1.3 Score=44.36 Aligned_cols=40 Identities=33% Similarity=0.470 Sum_probs=35.3
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|.+++|.|+|+.|.+++..+...|+ +|+++.|+.++.+.
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~ 227 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQ 227 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence 57899999999999999998999999 89999998877654
No 359
>PTZ00188 adrenodoxin reductase; Provisional
Probab=86.61 E-value=0.98 Score=47.57 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=30.0
Q ss_pred CCCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCCh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF 401 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~ 401 (409)
..++|+|||+|.+|-.+|..|. +.|++|+|+.|.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4679999999999999998765 6788999998864
No 360
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.61 E-value=6.1 Score=40.05 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCEEEEEecC-------CC---CC-CC-------------hhHHHHHHhcCCCcEEEEeccC-CCCCC
Q 015310 25 VLSNMYQAKAEGADVVEIRLDC-------IN---NF-QP-------------GKDLEIILTKKPLPVLIVYRPK-WAGGL 79 (409)
Q Consensus 25 ~~~~~~~~~~~~aD~vElRlD~-------l~---~~-~~-------------~~~l~~l~~~~~~PiI~T~R~~-~eGG~ 79 (409)
+.+.++++.+.|.|.||+..-+ |. +. .+ .+.++.+++...-.+++.+|-. +++..
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~ 225 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD 225 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence 3444566677899999999876 11 11 11 1344455554433344455533 22111
Q ss_pred C----CCCHHHHHHHHHHHHHcCCcEEEE
Q 015310 80 Y----EGDEHKRLEALHLAEDLGADYVDF 104 (409)
Q Consensus 80 ~----~~~~~~~~~ll~~~~~~g~dyvDi 104 (409)
+ ..+.++-.++++.+.+.|+|||++
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 1 235677778888888889999876
No 361
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=86.59 E-value=1.3 Score=44.14 Aligned_cols=41 Identities=39% Similarity=0.427 Sum_probs=35.9
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l 407 (409)
.|+++||.|+|+.|.+++..+..+|+ +|+++.++.++.+.+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 218 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA 218 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 57899999999999999999999999 999999888776543
No 362
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=86.45 E-value=6.6 Score=39.17 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecC-------CCC---C-CC-------------hhHHHHHHhcC--CCcEEEEeccC--
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDC-------INN---F-QP-------------GKDLEIILTKK--PLPVLIVYRPK-- 74 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~-------l~~---~-~~-------------~~~l~~l~~~~--~~PiI~T~R~~-- 74 (409)
+++...++++.+.|.|.||+-.-+ |.. . .+ .+.++.+++.. +.|+.+-++..
T Consensus 154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~ 233 (336)
T cd02932 154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW 233 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccccc
Confidence 344555667777999999998753 111 1 11 13455566555 55666555532
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310 75 WAGGLYEGDEHKRLEALHLAEDLGADYVDF 104 (409)
Q Consensus 75 ~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi 104 (409)
.++|. +.++..++.+.+.+.|+|||+|
T Consensus 234 ~~~g~---~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 234 VEGGW---DLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred CCCCC---CHHHHHHHHHHHHHcCCCEEEE
Confidence 12332 5677888888888889999886
No 363
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=86.41 E-value=1.4 Score=43.66 Aligned_cols=40 Identities=33% Similarity=0.405 Sum_probs=34.5
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.+++++|+|+|+.|.+++..+..+|+ .|+++.++.++.+.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~ 200 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLAL 200 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence 47899999999999999999999999 57888888877654
No 364
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=86.39 E-value=26 Score=33.40 Aligned_cols=122 Identities=18% Similarity=0.161 Sum_probs=77.3
Q ss_pred HHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCc---------------cchHHHHH---
Q 015310 56 LEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA---------------SNILGKQY--- 117 (409)
Q Consensus 56 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~---------------~~~~~~l~--- 117 (409)
+..+.+...+|++.-..+ |. ++.+...+..+..++.|+..|=||-... ++..+.+.
T Consensus 61 ~~~I~~~~~~Pv~~D~~~----G~--g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~ 134 (243)
T cd00377 61 VRRIARAVDLPVIADADT----GY--GNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAAR 134 (243)
T ss_pred HHHHHhhccCCEEEEcCC----CC--CCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHH
Confidence 344445678999987643 42 2556677778899999999999976542 22333333
Q ss_pred hccCC--CcEEEEeccCCCCC-CCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEE
Q 015310 118 SSHQS--GTRFIVSCNLDCET-PSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187 (409)
Q Consensus 118 ~~~~~--~~kiI~S~H~f~~t-p~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~ 187 (409)
.+... ..-||.--=-|... ...++.+++.+...+.|||.+=+ ..+.+.++..++. ...+.|++.+.
T Consensus 135 ~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v-~~~~~~~~~~~~~---~~~~~Pl~~~~ 203 (243)
T cd00377 135 DARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFV-EGLKDPEEIRAFA---EAPDVPLNVNM 203 (243)
T ss_pred HHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEe-CCCCCHHHHHHHH---hcCCCCEEEEe
Confidence 23222 34444432223222 46788999999999999999866 4555666665544 44577887663
No 365
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.31 E-value=1 Score=48.14 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=37.0
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
.+++|+|.|..|+.++..|.+.|.++++++.|+++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~ 457 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELR 457 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 4799999999999999999999999999999999988763
No 366
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=86.28 E-value=35 Score=33.32 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=29.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC--CcEEEEeccCcc
Q 015310 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG--ADYVDFELKVAS 110 (409)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g--~dyvDiEl~~~~ 110 (409)
.+.|+++.+.. .+.+++.+..+.+.+.+ +|+||+-+.++.
T Consensus 89 ~~~pl~~qi~g--------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~ 130 (300)
T TIGR01037 89 FPTPLIASVYG--------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPH 130 (300)
T ss_pred CCCcEEEEeec--------CCHHHHHHHHHHHHhccCccCEEEEECCCCC
Confidence 36799999852 25678888877776653 899999988764
No 367
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=86.28 E-value=3.1 Score=41.45 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=39.3
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015310 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185 (409)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~ 185 (409)
..|-+.+.-.+++.++.+.|||||++|+. +.++...+-......+.|+|+
T Consensus 28 t~T~Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVA 77 (346)
T TIGR00612 28 TDTIDIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVA 77 (346)
T ss_pred CCchhHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEE
Confidence 34445667788899999999999999987 667776666666677888876
No 368
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=86.24 E-value=29 Score=32.74 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=59.3
Q ss_pred CCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CC-----hhHHHHHHhcC-CCcEEEEeccCCCCCCC
Q 015310 8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QP-----GKDLEIILTKK-PLPVLIVYRPKWAGGLY 80 (409)
Q Consensus 8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~-----~~~l~~l~~~~-~~PiI~T~R~~~eGG~~ 80 (409)
+-+++|+.+|..-+...+.++++++.+.|+|.+ -+|.++.. -+ .+.++.+++.. ++|+=+.+-..
T Consensus 4 ~~~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~--H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~------ 75 (228)
T PTZ00170 4 PLKAIIAPSILAADFSKLADEAQDVLSGGADWL--HVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVS------ 75 (228)
T ss_pred CCCCEEehhHhhcCHHHHHHHHHHHHHcCCCEE--EEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCC------
Confidence 347889999999999999999999888888886 56776632 11 24566676655 77776666521
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeccC
Q 015310 81 EGDEHKRLEALHLAEDLGADYVDFELKV 108 (409)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~dyvDiEl~~ 108 (409)
..+.+. +.+.+.|+|+|-+=...
T Consensus 76 --~p~~~i---~~~~~~Gad~itvH~ea 98 (228)
T PTZ00170 76 --NPEKWV---DDFAKAGASQFTFHIEA 98 (228)
T ss_pred --CHHHHH---HHHHHcCCCEEEEeccC
Confidence 344444 45566777776664443
No 369
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=86.08 E-value=4.9 Score=40.36 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCEEEEEec--CC-----CCC-C---C-------------hhHHHHHHhcCCCcEEEEeccCC----C
Q 015310 25 VLSNMYQAKAEGADVVEIRLD--CI-----NNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPKW----A 76 (409)
Q Consensus 25 ~~~~~~~~~~~~aD~vElRlD--~l-----~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~~----e 76 (409)
+...++++.+.|.|.||+-.- || ... + + .+-+..+++..+.++.+.+|-.. +
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 344456667789999999993 32 211 1 1 13344555556777778888543 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CcEEEEe
Q 015310 77 GGLYEGDEHKRLEALHLAEDLG-ADYVDFE 105 (409)
Q Consensus 77 GG~~~~~~~~~~~ll~~~~~~g-~dyvDiE 105 (409)
|| .+.++-.++.+.+.+.| +|||+|-
T Consensus 223 ~G---~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 223 GG---LSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred CC---CCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 33 35677788888888998 8999983
No 370
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.05 E-value=1.1 Score=49.77 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=34.8
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
++|.|||||-+|..|++.++..|++|++++++++..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~ 373 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDR 373 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHH
Confidence 68999999999999999999999999999999877554
No 371
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=86.01 E-value=0.89 Score=43.48 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=31.0
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~ 401 (409)
..+++|+|+||-|..++..|...|+ +++|++.+.
T Consensus 30 ~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~ 64 (254)
T COG0476 30 DSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDT 64 (254)
T ss_pred hCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCc
Confidence 4579999999999999999999999 999998764
No 372
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.00 E-value=5.6 Score=39.28 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCEEEEEec--CC-----CCC----CC-------------hhHHHHHHhcC--CCcEEEEeccC--CC
Q 015310 25 VLSNMYQAKAEGADVVEIRLD--CI-----NNF----QP-------------GKDLEIILTKK--PLPVLIVYRPK--WA 76 (409)
Q Consensus 25 ~~~~~~~~~~~~aD~vElRlD--~l-----~~~----~~-------------~~~l~~l~~~~--~~PiI~T~R~~--~e 76 (409)
+.+.++++.+.|.|.||+-.- || ... .+ .+.+..+++.. +.|+.+-++.. .+
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 344456667789999999885 22 111 11 13444555544 56666666543 12
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 77 GGLYEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 77 GG~~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
+| .+.++..++++.+.+.|+|||+|-
T Consensus 223 ~g---~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 223 GG---LTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred CC---CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 33 367888999999999999999874
No 373
>PLN02712 arogenate dehydrogenase
Probab=85.99 E-value=1.6 Score=47.96 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ 402 (409)
...+++++.|||.|.+|++++.+|.+.|.+|++++|+..
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~ 403 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY 403 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence 445678999999999999999999999999999999854
No 374
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.87 E-value=1.1 Score=44.34 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=28.3
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeC
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 399 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR 399 (409)
.-++|||||||-|--+..-|+-.|. ++.|++-
T Consensus 40 ~~kiLviGAGGLGCElLKnLal~gF~~~~viDm 72 (422)
T KOG2015|consen 40 DCKILVIGAGGLGCELLKNLALSGFRQLHVIDM 72 (422)
T ss_pred hCcEEEEccCcccHHHHHhHHhhccceeEEEee
Confidence 4689999999999999999999998 7888753
No 375
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=85.80 E-value=1.5 Score=42.65 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=35.2
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+.+++|.|+|+.|.+++..+..+|++|+++.++.++.+.+
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~ 195 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALA 195 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 46899999999999999999999999988888887776543
No 376
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=85.79 E-value=3.5 Score=40.98 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=44.4
Q ss_pred EEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015310 125 RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185 (409)
Q Consensus 125 kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~ 185 (409)
.|.+-.-....|-+.+.-.+++.++.+.|||||++++. +.+|...+-+...+.+.|+|+
T Consensus 21 PI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVa 79 (361)
T COG0821 21 PIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVA 79 (361)
T ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEE
Confidence 34443333455666777888899999999999999886 777777777777777889886
No 377
>PRK08005 epimerase; Validated
Probab=85.78 E-value=28 Score=32.53 Aligned_cols=58 Identities=9% Similarity=0.083 Sum_probs=41.9
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCC-C-----hhHHHHHHhcCCCcEEEEe
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQ-P-----GKDLEIILTKKPLPVLIVY 71 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~-~-----~~~l~~l~~~~~~PiI~T~ 71 (409)
+|+.+|..-+...+.++++++.+.|+|.+ -+|.++..- + .+.++.+++.++.|+=+++
T Consensus 2 ~i~pSil~ad~~~l~~el~~l~~~g~d~l--HiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHL 65 (210)
T PRK08005 2 ILHPSLASADPLRYAEALTALHDAPLGSL--HLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHL 65 (210)
T ss_pred EEEeehhhCCHHHHHHHHHHHHHCCCCEE--EEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEe
Confidence 57889999999999999999888899986 567776321 1 2456667665666655554
No 378
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=85.77 E-value=13 Score=35.85 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=69.9
Q ss_pred HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH-cCCcEEEEeccCccchHHHHHhccCCCcEEE------Ee
Q 015310 57 EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQYSSHQSGTRFI------VS 129 (409)
Q Consensus 57 ~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI------~S 129 (409)
+.+.+..+.|+|+. =. +=|.+..++++-.+--.+.++ .|++.|=||-.. +..+.+..+.+.++.++ -.
T Consensus 65 ~~V~r~~~~p~via-D~--~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~--~~~~~I~al~~agipV~gHiGL~pq 139 (254)
T cd06557 65 RAVRRGAPRALVVA-DM--PFGSYQTSPEQALRNAARLMKEAGADAVKLEGGA--EVAETIRALVDAGIPVMGHIGLTPQ 139 (254)
T ss_pred HHHHhcCCCCeEEE-eC--CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcH--HHHHHHHHHHHcCCCeeccccccce
Confidence 34455668895542 11 213444556665555455555 899999999763 22223332223444433 22
Q ss_pred ccCCC-------CCCC-HhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCc
Q 015310 130 CNLDC-------ETPS-EEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE 190 (409)
Q Consensus 130 ~H~f~-------~tp~-~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~ 190 (409)
.+++. +|.. .+++.+....+++.|||.+=+=..|. +.. -++++..+.|+|+|+-|.
T Consensus 140 ~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~--~~~---~~i~~~v~iP~igiGaG~ 203 (254)
T cd06557 140 SVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVPA--ELA---KEITEALSIPTIGIGAGP 203 (254)
T ss_pred eeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH--HHH---HHHHHhCCCCEEEeccCC
Confidence 22221 2332 35677777888899999887755542 222 333444578999998776
No 379
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.76 E-value=1.3 Score=45.59 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..+.||++.|+|.|..|+.++..+..+|++|..++|+.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~ 184 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED 184 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 45789999999999999999999999999999999864
No 380
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.71 E-value=1.7 Score=42.61 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=34.2
Q ss_pred CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.|.+++|.| +|+.|.+++..+...|++|+.+.++.++.+.+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~ 179 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL 179 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 478999999 59999999888888999988888887776543
No 381
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=85.69 E-value=6.1 Score=40.34 Aligned_cols=81 Identities=22% Similarity=0.102 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCCEEEEEe---cCC-----C---CC-CC-------------hhHHHHHHhcCCCcEEEEeccCC-----
Q 015310 26 LSNMYQAKAEGADVVEIRL---DCI-----N---NF-QP-------------GKDLEIILTKKPLPVLIVYRPKW----- 75 (409)
Q Consensus 26 ~~~~~~~~~~~aD~vElRl---D~l-----~---~~-~~-------------~~~l~~l~~~~~~PiI~T~R~~~----- 75 (409)
.+.++++.+.|.|.||+-. -|| . +. .+ .+.++.+++.....+++.+|-..
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~ 232 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIK 232 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcc
Confidence 3445566778999999997 443 1 11 11 13444555555433445555221
Q ss_pred ----------CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310 76 ----------AGGLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (409)
Q Consensus 76 ----------eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl 106 (409)
|....-.+.++..++.+.+.+.|+|||+|-.
T Consensus 233 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 233 DLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 1111113567888999999889999999853
No 382
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=85.57 E-value=13 Score=35.71 Aligned_cols=105 Identities=6% Similarity=-0.031 Sum_probs=64.1
Q ss_pred EEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc---------------CccchHHHHHhccCCCcEEEEeccCC
Q 015310 69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK---------------VASNILGKQYSSHQSGTRFIVSCNLD 133 (409)
Q Consensus 69 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~---------------~~~~~~~~l~~~~~~~~kiI~S~H~f 133 (409)
.|+|.-.|--.+..+.++..++++...+.|+++|++=+. .+.+.++.+... .+++++.+-.+.
T Consensus 6 ~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~~~- 83 (263)
T cd07943 6 VTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLLLP- 83 (263)
T ss_pred CCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEecC-
Confidence 466643332234567899999999999999999877411 112344444322 245676433211
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCC
Q 015310 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180 (409)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~ 180 (409)
..+.. +-++++.+.|.|++.+.+..++........+..+...
T Consensus 84 -~~~~~----~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G 125 (263)
T cd07943 84 -GIGTV----DDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG 125 (263)
T ss_pred -CccCH----HHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC
Confidence 11112 3367777889999999998877766666665555444
No 383
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=85.44 E-value=8.7 Score=38.23 Aligned_cols=96 Identities=9% Similarity=0.099 Sum_probs=67.6
Q ss_pred CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CCh----hHHHHHHhcCCCcEEEEecc
Q 015310 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QPG----KDLEIILTKKPLPVLIVYRP 73 (409)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----------~~~----~~l~~l~~~~~~PiI~T~R~ 73 (409)
..| +.+.|.+.+.+++.+.++.+...|+|.||+=.-+=... ... +.+..+++..+.|+-+-+|.
T Consensus 54 e~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~ 132 (318)
T TIGR00742 54 ESP-VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI 132 (318)
T ss_pred CCc-EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 345 56999999999999988888778999999988773211 111 22333444568999999997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccC
Q 015310 74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV 108 (409)
Q Consensus 74 ~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~ 108 (409)
-++-. .+.+...++.+.+.+.|++.|+|--.+
T Consensus 133 g~~~~---~~~~~~~~~~~~l~~~G~~~itvHgRt 164 (318)
T TIGR00742 133 GIDPL---DSYEFLCDFVEIVSGKGCQNFIVHARK 164 (318)
T ss_pred CCCCc---chHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 54311 122566788888889999999987554
No 384
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=85.38 E-value=36 Score=32.74 Aligned_cols=110 Identities=22% Similarity=0.239 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCCEEEEEec--CCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015310 25 VLSNMYQAKAEGADVVEIRLD--CINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV 102 (409)
Q Consensus 25 ~~~~~~~~~~~~aD~vElRlD--~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv 102 (409)
....++.+...|||++=.-.| +|.. ..+.+..+++..++|+|. + + |-.+ .| + +..+...|+|.|
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f~g--~~~~l~~v~~~v~iPvl~--k---d---fi~~--~~-q-i~~a~~~GAD~V 137 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFFQG--SLEYLRAARAAVSLPVLR--K---D---FIID--PY-Q-IYEARAAGADAI 137 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccCCC--CHHHHHHHHHhcCCCEEe--e---e---ecCC--HH-H-HHHHHHcCCCEE
Confidence 445566666789999933223 3333 235677777778999994 1 1 3333 23 2 567778999988
Q ss_pred EEeccC-ccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310 103 DFELKV-ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 158 (409)
Q Consensus 103 DiEl~~-~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK 158 (409)
=+-... ..+.+++++ .++.-|..+++-.|+. +|+ +++.+.|+|++=
T Consensus 138 lLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~------~E~----~~A~~~gadiIg 185 (260)
T PRK00278 138 LLIVAALDDEQLKELLDYAHSLGLDVLVEVHDE------EEL----ERALKLGAPLIG 185 (260)
T ss_pred EEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCH------HHH----HHHHHcCCCEEE
Confidence 877666 334556666 4566788999999972 344 446678999754
No 385
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=85.36 E-value=3.6 Score=41.31 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=43.0
Q ss_pred CcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015310 123 GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185 (409)
Q Consensus 123 ~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~ 185 (409)
+..|.+-.--...|-+.+.-.+++.++.+.||||+++|+. +.+|...+-....+.++|+|+
T Consensus 25 ~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvA 85 (360)
T PRK00366 25 DAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVA 85 (360)
T ss_pred CCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEE
Confidence 3344333332334445667888899999999999999987 666776666666666888876
No 386
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=85.30 E-value=1.4 Score=43.88 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~ 401 (409)
..+.||++.|+|-|..||+++.-|. -+|++|..++|..
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~ 179 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH 179 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 3578999999999999999999887 7899999888863
No 387
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=85.28 E-value=36 Score=32.62 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEe---------cC-CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRL---------DC-INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE 89 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRl---------D~-l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ 89 (409)
+.++.++-++...+.|.|.+|.=. +. +...++.+.+..+++. .+.++..-++.. .. . .+
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~----~~--~----~~ 89 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG----IG--T----VD 89 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC----cc--C----HH
Confidence 345555556666778999999952 11 1122344556666543 245555444421 11 1 13
Q ss_pred HHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec--CC
Q 015310 90 ALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV--ND 165 (409)
Q Consensus 90 ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~--~~ 165 (409)
-++.+.+.|+++|-|-....+ +...+.+ .++..+.++.++.=+.... +.+++.++.+++.+.|+|.+=++=+. -+
T Consensus 90 ~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~ 168 (263)
T cd07943 90 DLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMA-SPEELAEQAKLMESYGADCVYVTDSAGAML 168 (263)
T ss_pred HHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCC-CHHHHHHHHHHHHHcCCCEEEEcCCCCCcC
Confidence 367888889999888665543 1223333 4556677776665332222 35789999999999999998776332 25
Q ss_pred HhHHHHHHHHhccC-CC-CEEEE------EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310 166 ITEIARIFQLLSHC-QV-PIIAY------SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (409)
Q Consensus 166 ~~D~~~ll~~~~~~-~~-p~i~~------~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~ 231 (409)
+.++.++.+.+.+. +. |+ .+ +|+..-.+. .-.-|..+.-+++.. +--.|+++.+++...++.
T Consensus 169 P~~v~~lv~~l~~~~~~~~l-~~H~Hn~~GlA~AN~la---Ai~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L~~ 239 (263)
T cd07943 169 PDDVRERVRALREALDPTPV-GFHGHNNLGLAVANSLA---AVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLER 239 (263)
T ss_pred HHHHHHHHHHHHHhCCCceE-EEEecCCcchHHHHHHH---HHHhCCCEEEeecccccCCcCCccHHHHHHHHHh
Confidence 78888888776543 32 32 22 122211111 112244333333322 223788888887766543
No 388
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=85.27 E-value=1.4 Score=43.98 Aligned_cols=37 Identities=35% Similarity=0.484 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+.||++-|+|.|..|+.++.-|..+|++|..+++.
T Consensus 138 ~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~ 174 (324)
T COG0111 138 TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPY 174 (324)
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence 4677999999999999999999999999999999993
No 389
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=85.19 E-value=1.1 Score=46.95 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=32.6
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
...+++|.|+|+|.++.++++-|.+.|..|+|+.|.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~ 155 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERV 155 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCc
Confidence 345799999999999999999999999999998775
No 390
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=85.19 E-value=25 Score=34.09 Aligned_cols=142 Identities=19% Similarity=0.202 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEec-CCCCC---CC---hhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 21 SVEQVLSNMYQAKAEGADVVEIRLD-CINNF---QP---GKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 21 ~~~e~~~~~~~~~~~~aD~vElRlD-~l~~~---~~---~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+.+|+.+++.++.+.||-+|=+-+. --... ++ .+.+..+|+. .++++=.| -||....+.++|++.+.
T Consensus 24 tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~T-----tg~~~~~~~~~R~~~v~ 98 (272)
T PF05853_consen 24 TPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPT-----TGGGGGPDPEERLAHVE 98 (272)
T ss_dssp SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEE-----SSTTTTSGHHHHCTHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeC-----CCCCCCCCHHHHHHHHH
Confidence 7899999999999999999987665 22211 11 2445566655 56666666 23333456789998887
Q ss_pred HHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHH
Q 015310 93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARI 172 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~l 172 (409)
.. .+|..-+.+.... .+..++.-.-+.+.+.+.++.|++.| +|.-...-+..++..+
T Consensus 99 ~~---~pd~asl~~gs~n-----------------~~~~~~~~~n~~~~~~~~~~~~~e~G---i~pe~ev~d~~~l~~~ 155 (272)
T PF05853_consen 99 AW---KPDMASLNPGSMN-----------------FGTRDRVYINTPADARELARRMRERG---IKPEIEVFDPGHLRNA 155 (272)
T ss_dssp HH-----SEEEEE-S-EE-----------------ESGGCSEE---HHHHHHHHHHHHHTT----EEEEEESSHHHHHHH
T ss_pred hc---CCCeEEecccccc-----------------cccCCceecCCHHHHHHHHHHHHHcC---CeEEEEEEcHHHHHHH
Confidence 76 5777666554422 00122111123468999999999999 5777777788888777
Q ss_pred HHHhccC---CCCEEEEEcCc
Q 015310 173 FQLLSHC---QVPIIAYSVGE 190 (409)
Q Consensus 173 l~~~~~~---~~p~i~~~MG~ 190 (409)
..+..+- ....+-+.||.
T Consensus 156 ~~l~~~G~l~~p~~~~~vlG~ 176 (272)
T PF05853_consen 156 RRLIEKGLLPGPLLVNFVLGV 176 (272)
T ss_dssp HHHHHTTSS-SSEEEEEEES-
T ss_pred HHHHHCCCCCCCeEEEEcccC
Confidence 7765432 33355556644
No 391
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=85.16 E-value=1 Score=46.82 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.1
Q ss_pred CEEEEEechhHHHHHHHHHHhC--CCeEEEEeCC
Q 015310 369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDID 400 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~ 400 (409)
..|+|||+|-+|.++||.|++. |.+|+|+.+.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 3699999999999999999998 7899999875
No 392
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=85.08 E-value=1.2 Score=46.34 Aligned_cols=32 Identities=34% Similarity=0.404 Sum_probs=28.7
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEe
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFD 398 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~n 398 (409)
.+++++|||||-||.++|..|.++|+ .++|+-
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE 52 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE 52 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEE
Confidence 45689999999999999999999998 888874
No 393
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=85.08 E-value=13 Score=34.67 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=67.4
Q ss_pred CeeEEEeeccCCHHHHHHHHHHHHhcCC-CEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310 10 TTMICAPLMAQSVEQVLSNMYQAKAEGA-DVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (409)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~a-D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 88 (409)
.|.+..|+.+-+..++...+.+ .|+ .+++-|..-.+ ...+.++.+++..+.|+.+.+.-.. .+....
T Consensus 3 ~pi~~a~m~g~~~~~~~~~~~~---~G~ig~i~~~~~~~~--~~~~~~~~i~~~~~~~~~v~~i~~~-------~~~~~~ 70 (236)
T cd04730 3 YPIIQAPMAGVSTPELAAAVSN---AGGLGFIGAGYLTPE--ALRAEIRKIRALTDKPFGVNLLVPS-------SNPDFE 70 (236)
T ss_pred CCEECCCCCCCCCHHHHHHHHh---CCCccccCCCCCCHH--HHHHHHHHHHHhcCCCeEEeEecCC-------CCcCHH
Confidence 4677777777655555444433 343 44433221100 0012233444333457665554221 002334
Q ss_pred HHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310 89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (409)
Q Consensus 89 ~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~ 161 (409)
+.++.+.+.|+|.|.+-.....+..+.+ ++.+.++|.+.|+ . +.++++.+.|+|++++..
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~~~~~~~~~---~~~~i~~i~~v~~------~----~~~~~~~~~gad~i~~~~ 130 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGPPAEVVERL---KAAGIKVIPTVTS------V----EEARKAEAAGADALVAQG 130 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCCCHHHHHHH---HHcCCEEEEeCCC------H----HHHHHHHHcCCCEEEEeC
Confidence 5666778889999988655333444333 3457888888763 2 234455667999998743
No 394
>PLN02306 hydroxypyruvate reductase
Probab=85.07 E-value=1.4 Score=45.06 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~ 401 (409)
..+.||++.|+|.|..|++++.-|. -+|++|..++|+.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~ 199 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 3578999999999999999999885 7899999999875
No 395
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=85.06 E-value=1.7 Score=43.44 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=33.5
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.|.+++|.|+|+.|.+++..+...|++++++.++.++.+.
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~ 219 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREE 219 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 5789999999999999999899999988877777665443
No 396
>PLN02827 Alcohol dehydrogenase-like
Probab=85.04 E-value=1.7 Score=43.93 Aligned_cols=40 Identities=38% Similarity=0.519 Sum_probs=34.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|.+++|.|+|+.|.+++..+...|+ .|++++++.+|.+.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~ 233 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEK 233 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence 47899999999999999998899999 68888877776543
No 397
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=84.99 E-value=1.4 Score=43.96 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++||++-|+|.|..|++++.-++-.|++|..++|+.
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~ 179 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSP 179 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCC
Confidence 56789999999999999999999998888999999986
No 398
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.88 E-value=1.4 Score=48.65 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=33.4
Q ss_pred CCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCChHHHH
Q 015310 368 GRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFEQSL 405 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~~ka~ 405 (409)
-++|.|||||-+|+.|++.++ ..|++|++++++.+..+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~ 347 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGIN 347 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 368999999999999999998 77999999999876543
No 399
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.81 E-value=1.8 Score=42.32 Aligned_cols=41 Identities=32% Similarity=0.302 Sum_probs=34.9
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~~l 407 (409)
.+.+++|+|+|+.+++++..+..+|++ |+++.++.++.+.+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA 200 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 467999999999999999999999995 99999988776543
No 400
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=84.77 E-value=1.9 Score=42.46 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=34.6
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.+++++|.|+|+.+.+++..+...|++|+++.++.++.+.
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~ 202 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADL 202 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence 4679999999999999999999999999999988776543
No 401
>PTZ00367 squalene epoxidase; Provisional
Probab=84.77 E-value=1.1 Score=48.22 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.9
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..|+|+|+|-+|.++|.+|.+.|.+|.|+.|+.
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999975
No 402
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=84.77 E-value=8.4 Score=38.78 Aligned_cols=82 Identities=16% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCEEEEEecC-------CCCC-C---C-------------hhHHHHHHhcCCCcEEEEeccCC-CCCC
Q 015310 25 VLSNMYQAKAEGADVVEIRLDC-------INNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPKW-AGGL 79 (409)
Q Consensus 25 ~~~~~~~~~~~~aD~vElRlD~-------l~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~~-eGG~ 79 (409)
+...++++.+.|.|.||+-.-. |... + + .+.++.+|+..+.++.+-+|-.. |...
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 3444566677899999997642 1211 1 1 13445566656666666677543 2111
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310 80 YEGDEHKRLEALHLAEDLGADYVDFEL 106 (409)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~g~dyvDiEl 106 (409)
...+.++-.++.+.+-+.|+|||+|-.
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 113667788888998889999999843
No 403
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=84.75 E-value=1.9 Score=43.22 Aligned_cols=40 Identities=30% Similarity=0.437 Sum_probs=34.7
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|.+++|+|+|+.|.+++..+..+|+ +|+++.++.+|.+.
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~ 224 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEK 224 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 47899999999999999998889999 79999988777553
No 404
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=84.75 E-value=1.7 Score=43.45 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=36.8
Q ss_pred CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la 408 (409)
-+...|||+|.-|+.-+.++... ++ +|.|++|+++++++++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a 172 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFA 172 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHH
Confidence 36899999999999999999876 56 8999999999999876
No 405
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=84.72 E-value=37 Score=32.25 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=27.1
Q ss_pred EeeccCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 015310 15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDC 46 (409)
Q Consensus 15 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~ 46 (409)
++.-.++.+...+.++...+.|+|++|+-+=+
T Consensus 6 ~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPf 37 (242)
T cd04724 6 ITAGDPDLETTLEILKALVEAGADIIELGIPF 37 (242)
T ss_pred EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 56677899999999999888899999998744
No 406
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.63 E-value=1.5 Score=48.31 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=32.8
Q ss_pred CEEEEEechhHHHHHHHHHH-hCCCeEEEEeCChHHHH
Q 015310 369 RMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFEQSL 405 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~~ka~ 405 (409)
++|.|||||-+|+.+++.++ ..|++|++++++++..+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~ 342 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGIN 342 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 68999999999999999988 58999999999976543
No 407
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=84.63 E-value=1.9 Score=43.53 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=35.6
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l 407 (409)
.+.+++|+|+|+.+.+++..+..+|+ +|+++.++.++.+.+
T Consensus 190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a 231 (373)
T cd08299 190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA 231 (373)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 47899999999999999999999999 899999888776543
No 408
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.59 E-value=2.1 Score=41.72 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=34.4
Q ss_pred CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.|.+++|.| +|+.|.+++..+...|++|+.+.++.++.+.+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l 184 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL 184 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 478999999 59999999888888999988888887776544
No 409
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=84.54 E-value=24 Score=33.06 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310 83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS 162 (409)
Q Consensus 83 ~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~ 162 (409)
+.+.+.++.+++.++|.+.=.=|+..+-....+++...+-.--+|++-- .++-++.......+-|=|..-
T Consensus 49 tk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~----------a~~dF~gidTs~pn~VVigla 118 (262)
T KOG3040|consen 49 TKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDD----------ALEDFDGIDTSDPNCVVIGLA 118 (262)
T ss_pred cchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEccc----------chhhCCCccCCCCCeEEEecC
Confidence 4567788999999999765444565655444555533233344566532 222222222223444444444
Q ss_pred cC--CHhHHHHHHHHhccC-CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhccccccce
Q 015310 163 VN--DITEIARIFQLLSHC-QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTK 239 (409)
Q Consensus 163 ~~--~~~D~~~ll~~~~~~-~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~i~~~~~ 239 (409)
|+ +.+..-+-++++.+. +.++|+|+-|..- -|.-++.+|. =+| ...+++. ...
T Consensus 119 pe~F~y~~ln~AFrvL~e~~k~~LIai~kgryy--kr~~Gl~lgp-G~f-----------------v~aLeya----tg~ 174 (262)
T KOG3040|consen 119 PEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYY--KRVDGLCLGP-GPF-----------------VAALEYA----TGC 174 (262)
T ss_pred cccccHHHHHHHHHHHHcCCCCeEEEecCceee--eeccccccCc-hHH-----------------HHHhhhc----cCc
Confidence 44 556666677777666 4678888877653 3555554443 122 2233332 123
Q ss_pred EEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEE
Q 015310 240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSV 295 (409)
Q Consensus 240 ~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nV 295 (409)
..-++|.| ||.++..+++.+|++..-..+--+|+.+=+-...+.+.+|+-|
T Consensus 175 ~a~vvGKP-----~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilV 225 (262)
T KOG3040|consen 175 EATVVGKP-----SPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILV 225 (262)
T ss_pred eEEEecCC-----CHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEe
Confidence 46789999 9999999999999875322221133333222333456666655
No 410
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=84.41 E-value=2 Score=41.77 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 368 ~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
+++++|.|+ |+.|.+++..+...|++|+++.++.++.+.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 187 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL 187 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 579999998 9999999999999999999889888776543
No 411
>PLN02712 arogenate dehydrogenase
Probab=84.40 E-value=2.3 Score=46.69 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=33.0
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
+.+++.|||.|.+|++++.+|.+.|.+|++++|+..+
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~ 87 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS 87 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4568999999999999999999999999999998544
No 412
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=84.40 E-value=26 Score=31.50 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCChh---HHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
+++++.++++.+.|+++|=+|.=-+...+-.+ .+..+.+..+.|+|+.-| . +.+.+.++
T Consensus 12 ~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~---------------~---~la~~~~~ 73 (180)
T PF02581_consen 12 DDFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDR---------------V---DLALELGA 73 (180)
T ss_dssp CHHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES----------------H---HHHHHCT-
T ss_pred chHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCC---------------H---HHHHhcCC
Confidence 56777788888999999999986443321112 223333456789998743 2 24566889
Q ss_pred cEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CH-----hHHHHH
Q 015310 100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DI-----TEIARI 172 (409)
Q Consensus 100 dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~-----~D~~~l 172 (409)
|.|=+.....+. .+.......+..+=.|.|+ .+| +.++.+.|+|.+=+--.-. +. .....+
T Consensus 74 dGvHl~~~~~~~--~~~r~~~~~~~~ig~S~h~------~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l 141 (180)
T PF02581_consen 74 DGVHLGQSDLPP--AEARKLLGPDKIIGASCHS------LEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGL 141 (180)
T ss_dssp SEEEEBTTSSSH--HHHHHHHTTTSEEEEEESS------HHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHH
T ss_pred CEEEecccccch--HHhhhhcccceEEEeecCc------HHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHH
Confidence 998886654321 1122112345667779997 233 6677788999887664411 11 133444
Q ss_pred HHHhccCCCCEEEEE
Q 015310 173 FQLLSHCQVPIIAYS 187 (409)
Q Consensus 173 l~~~~~~~~p~i~~~ 187 (409)
.++....++|+++++
T Consensus 142 ~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 142 REIARASPIPVYALG 156 (180)
T ss_dssp HHHHHHTSSCEEEES
T ss_pred HHHHHhCCCCEEEEc
Confidence 444555678888764
No 413
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=84.36 E-value=5.1 Score=44.69 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcC--CCcEEEEeccC--CC
Q 015310 25 VLSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKK--PLPVLIVYRPK--WA 76 (409)
Q Consensus 25 ~~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~--~~PiI~T~R~~--~e 76 (409)
+.+.++++.+.|.|.||+-.-+ |... .+ .+.++.+++.. +.|+-+-++.. .+
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 4445666677899999997662 1111 01 13334444443 34555555432 12
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 77 GGLYEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 77 GG~~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
|| .+.++..++.+.+.+.|+|||||-
T Consensus 633 ~g---~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 633 GG---NTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred CC---CCHHHHHHHHHHHHhcCCcEEEeC
Confidence 33 356778888888888999999984
No 414
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=84.26 E-value=21 Score=33.08 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=67.5
Q ss_pred EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+|+.+-..+.++.++.++++ ...+|++|+-+|++..... +.++.+++. ..++++=+... +-|. +.+.+ .+
T Consensus 1 ~ivAlD~~~~~~a~~~~~~~-~~~v~~iKig~~l~~~~G~-~~v~~l~~~-~~~v~lD~K~~-Dig~---t~~~~---~~ 70 (213)
T TIGR01740 1 LIVALDVTTKDEALDLADSL-GPEIEVIKVGIDLLLDGGD-KIIDELAKL-NKLIFLDLKFA-DIPN---TVKLQ---YE 70 (213)
T ss_pred CEEECCCCCHHHHHHHHHhc-CCcCcEEEECHHHHHhcCH-HHHHHHHHc-CCCEEEEEeec-chHH---HHHHH---HH
Confidence 58899899999999888775 3337999999999986654 356666553 34666666542 1111 22233 34
Q ss_pred HHHHcCCcEEEEeccCccchHHHHHh-ccCCCcEE
Q 015310 93 LAEDLGADYVDFELKVASNILGKQYS-SHQSGTRF 126 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~~~~~~l~~-~~~~~~ki 126 (409)
.+.+.|+|++-|=.....+.++.++. .++.+.++
T Consensus 71 ~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v 105 (213)
T TIGR01740 71 SKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGL 105 (213)
T ss_pred HHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeE
Confidence 46789999999988777665665552 33334433
No 415
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=84.20 E-value=2.2 Score=41.43 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=35.1
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+.+++|.|+ |+.|++++..+...|++|+.+.|+.++.+.+
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~ 203 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL 203 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 4678999997 8899999999999999988888887776554
No 416
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=84.00 E-value=2.1 Score=42.38 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|++++|.|+|+.|.+++..+..+|+ +|+++.++.++.+.
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~ 212 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARREL 212 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 47899999999999999999999999 89999988887654
No 417
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=83.94 E-value=28 Score=32.75 Aligned_cols=134 Identities=11% Similarity=0.060 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcC-CCEEEEEecCCCCCCCh---hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015310 23 EQVLSNMYQAKAEG-ADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG 98 (409)
Q Consensus 23 ~e~~~~~~~~~~~~-aD~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g 98 (409)
+++...++.++..| +++|-+|---+...+-. +++..+.+..+.|+|+.-| +..+.+.|
T Consensus 26 ~~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~------------------~dlA~~~~ 87 (221)
T PRK06512 26 AELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGD------------------SRIAGRVK 87 (221)
T ss_pred ccHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH------------------HHHHHHhC
Confidence 46777888888899 69999995544322111 2233333445789997732 34566778
Q ss_pred CcEEEEeccCccchHHHHHhccCCCcEEEE-e-ccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec-CCHh----HHHH
Q 015310 99 ADYVDFELKVASNILGKQYSSHQSGTRFIV-S-CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV-NDIT----EIAR 171 (409)
Q Consensus 99 ~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~-S-~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~-~~~~----D~~~ 171 (409)
+|.|=+--+... +.+.+.. .+..++|+ | +|+ .++. .++.+.|||++=+=-.. .+.. --+.
T Consensus 88 adGVHLg~~d~~--~~~~r~~-~~~~~iiG~s~~~s------~~~a----~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~ 154 (221)
T PRK06512 88 ADGLHIEGNLAA--LAEAIEK-HAPKMIVGFGNLRD------RHGA----MEIGELRPDYLFFGKLGADNKPEAHPRNLS 154 (221)
T ss_pred CCEEEECccccC--HHHHHHh-cCCCCEEEecCCCC------HHHH----HHhhhcCCCEEEECCCCCCCCCCCCCCChH
Confidence 888765422111 1222211 13345676 5 343 2333 23557899988653211 1111 1123
Q ss_pred HH-HHhccCCCCEEEEE
Q 015310 172 IF-QLLSHCQVPIIAYS 187 (409)
Q Consensus 172 ll-~~~~~~~~p~i~~~ 187 (409)
++ .+....++|+++++
T Consensus 155 ~l~~~~~~~~iPvvAIG 171 (221)
T PRK06512 155 LAEWWAEMIEIPCIVQA 171 (221)
T ss_pred HHHHHHHhCCCCEEEEe
Confidence 34 23344578888875
No 418
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=83.92 E-value=2.2 Score=42.01 Aligned_cols=41 Identities=34% Similarity=0.499 Sum_probs=35.3
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
++++++|.|+|+.+.+++..+...|++|+++.++.++.+.+
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~ 205 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELA 205 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 47899999999999999999999999988888887775543
No 419
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=83.87 E-value=4.2 Score=39.59 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeccCc---------------cchHHHHH-hccCCCcEEEEeccCCCC--CC-CHh
Q 015310 80 YEGDEHKRLEALHLAEDLGADYVDFELKVA---------------SNILGKQY-SSHQSGTRFIVSCNLDCE--TP-SEE 140 (409)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~---------------~~~~~~l~-~~~~~~~kiI~S~H~f~~--tp-~~~ 140 (409)
...+-+.+.+.+..|.+.|.+|+=|+-... ...+++|+ -+++++++|++=+|.-.. +. -..
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~ 106 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK 106 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH
Confidence 345667888889999999999998876553 34567777 467899999998886220 01 122
Q ss_pred HHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHH
Q 015310 141 DLGYLVSRMQATGADIIKLVFSVNDITEIARIFQL 175 (409)
Q Consensus 141 ~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~ 175 (409)
++.+.+.++++.|..-+|+=.+..+.+...+..+-
T Consensus 107 ~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~ 141 (273)
T PF10566_consen 107 QLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYED 141 (273)
T ss_dssp CHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHH
Confidence 37888999999999999999999988777655433
No 420
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=83.82 E-value=2.1 Score=39.53 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310 364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD 398 (409)
Q Consensus 364 ~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n 398 (409)
.+++||+++|+|-+. .|+.++.-|.+.|+.|++++
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~ 93 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVD 93 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence 478999999999877 99999999999999999994
No 421
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=83.81 E-value=39 Score=31.80 Aligned_cols=143 Identities=15% Similarity=0.090 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
.+.+++.+.++++.+.+...|=+.--+. ....+.++..+..+- |+=.-+.|.. .-+.+..-.+.+++.|+
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~p~~v------~~a~~~l~~~~v~v~-tVigFP~G~~---~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVNPSYV------KLAAELLKGSDVKVC-TVIGFPLGAN---TTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEECHHHH------HHHHHHhCCCCCeEE-EEecccCCCC---hHHHHHHHHHHHHHcCC
Confidence 4578888888888777666653332211 122233333344443 4434445433 23455555678889999
Q ss_pred cEEEEeccCcc-------chHHHHH---hc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee----cC
Q 015310 100 DYVDFELKVAS-------NILGKQY---SS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS----VN 164 (409)
Q Consensus 100 dyvDiEl~~~~-------~~~~~l~---~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~----~~ 164 (409)
+-||+=++... .+.+++. .. +..-.|+|+---+. +.+++....+-+.+.|+|++|--+. ..
T Consensus 89 ~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L----~~e~i~~a~~~~~~agadfIKTsTG~~~~ga 164 (221)
T PRK00507 89 DEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLL----TDEEKVKACEIAKEAGADFVKTSTGFSTGGA 164 (221)
T ss_pred ceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 99997655421 1222332 22 23357888765433 4577888888888999999997554 34
Q ss_pred CHhHHHHHHHHh
Q 015310 165 DITEIARIFQLL 176 (409)
Q Consensus 165 ~~~D~~~ll~~~ 176 (409)
+.+|+..+.+..
T Consensus 165 t~~~v~~m~~~~ 176 (221)
T PRK00507 165 TVEDVKLMRETV 176 (221)
T ss_pred CHHHHHHHHHHh
Confidence 567776655543
No 422
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=83.71 E-value=28 Score=33.62 Aligned_cols=169 Identities=15% Similarity=0.214 Sum_probs=84.4
Q ss_pred EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHH-hcCCCcEEE-E
Q 015310 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIIL-TKKPLPVLI-V 70 (409)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~-~~~~~PiI~-T 70 (409)
.++.-.|+.+...+.++.+.+.|+|++|+-+-+-++.-+. +.+++++ +..+.|+++ |
T Consensus 15 yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~ 94 (259)
T PF00290_consen 15 YITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT 94 (259)
T ss_dssp EEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 3456678899999989888888999999999887655331 2345556 556899764 5
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE---EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHH
Q 015310 71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYV---DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVS 147 (409)
Q Consensus 71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv---DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~ 147 (409)
+-+. .-.--.-++++.+.+.|++-+ |+-++..+++.. . .++.+...|.=.- -.|| .+.+..+.+
T Consensus 95 Y~N~-------i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~-~--~~~~gl~~I~lv~--p~t~-~~Ri~~i~~ 161 (259)
T PF00290_consen 95 YYNP-------IFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE-A--AKKHGLDLIPLVA--PTTP-EERIKKIAK 161 (259)
T ss_dssp -HHH-------HHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH-H--HHHTT-EEEEEEE--TTS--HHHHHHHHH
T ss_pred eccH-------HhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH-H--HHHcCCeEEEEEC--CCCC-HHHHHHHHH
Confidence 4321 000112346777888886644 333322222222 2 2335555443211 1133 233333333
Q ss_pred HHHHcCCCEEEEEeecCC------HhHHHHHHHHhccC-CCCEE-EEEcCccchhhhhh
Q 015310 148 RMQATGADIIKLVFSVND------ITEIARIFQLLSHC-QVPII-AYSVGERGLVSQLL 198 (409)
Q Consensus 148 ~~~~~gaDivKia~~~~~------~~D~~~ll~~~~~~-~~p~i-~~~MG~~G~~SRi~ 198 (409)
... | -|+=++.+..+ ..++...++..++. +.|++ +|+-...-....+.
T Consensus 162 ~a~--g-FiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~ 217 (259)
T PF00290_consen 162 QAS--G-FIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA 217 (259)
T ss_dssp H-S--S-EEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH
T ss_pred hCC--c-EEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH
Confidence 321 2 34444455432 23455555555443 67743 44444444555555
No 423
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.65 E-value=1.9 Score=40.95 Aligned_cols=39 Identities=36% Similarity=0.314 Sum_probs=34.4
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSL 405 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~ 405 (409)
++.+++|.|+|++|.+++..+..+|++ |+++.++.++.+
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~ 136 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE 136 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH
Confidence 578999999999999999999999996 999998887765
No 424
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=83.62 E-value=40 Score=32.27 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 015310 20 QSVEQVLSNMYQAKAEGADVVEIRLDCIN 48 (409)
Q Consensus 20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~ 48 (409)
-+.++.+ +.+.+.|.|.||+.+|...
T Consensus 10 ~~l~~~l---~~a~~~G~d~vEl~~~~~~ 35 (279)
T cd00019 10 FGLENAL---KRAKEIGFDTVAMFLGNPR 35 (279)
T ss_pred ccHHHHH---HHHHHcCCCEEEEEcCCCC
Confidence 4445554 4556679999999998764
No 425
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=83.61 E-value=2.1 Score=41.91 Aligned_cols=41 Identities=27% Similarity=0.292 Sum_probs=35.0
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCC-CeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G-~~i~v~nR~~~ka~~l 407 (409)
.+++++|.|+|+.|.+++..+..+| .+|+.+.++.++.+.+
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~ 208 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLA 208 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence 4789999999999999999999999 5998888887776543
No 426
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=83.57 E-value=2.7 Score=43.02 Aligned_cols=52 Identities=29% Similarity=0.348 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 340 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 340 ~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
+|...+.+..+... +.+++|++|.|-|.|-+|+-++.-|.++|++|+.++-+
T Consensus 188 ~Gv~~~~~~a~~~~---------g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds 239 (411)
T COG0334 188 YGVFYAIREALKAL---------GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDS 239 (411)
T ss_pred eehHHHHHHHHHHc---------CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcC
Confidence 45556655444321 24589999999999999999999999999987776644
No 427
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=83.56 E-value=4.2 Score=40.83 Aligned_cols=50 Identities=16% Similarity=0.398 Sum_probs=34.4
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEE
Q 015310 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIA 185 (409)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~ 185 (409)
..|-+.+...+++.++.+.||||+++|+. +.++...+-+...+ .++|+++
T Consensus 25 t~t~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~g~~iPlVA 79 (359)
T PF04551_consen 25 TDTRDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRALGSPIPLVA 79 (359)
T ss_dssp S-TT-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCTT-SS-EEE
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccCCCCCCeee
Confidence 34556677889999999999999999998 66666666666555 5788886
No 428
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=83.54 E-value=1.4 Score=44.70 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCC
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDID 400 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~ 400 (409)
...++|||+|-+|.+++|.|++. |. +|+|+.|.
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 34699999999999999999985 96 99999986
No 429
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=83.47 E-value=1.3 Score=48.18 Aligned_cols=31 Identities=32% Similarity=0.375 Sum_probs=28.3
Q ss_pred EEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
.|||||+|+||.++|..+++.|++|.|+...
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 5999999999999999999999999988764
No 430
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=83.46 E-value=1.3 Score=45.98 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.5
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~ 400 (409)
+++.+|+|+|+||.|.-++..|...|+ +++|++-+
T Consensus 18 L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~ 53 (425)
T cd01493 18 LESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGS 53 (425)
T ss_pred HhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCC
Confidence 456789999999999999999999999 99999754
No 431
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=83.45 E-value=1.1 Score=48.83 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=30.6
Q ss_pred CEEEEEechhHHHHHHHHHHhC-CCeEEEEeCChH
Q 015310 369 RMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDFE 402 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~-G~~i~v~nR~~~ 402 (409)
..|+|+|||.+|.+++..|++. |+++.|+.|..+
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4799999999999999999995 999999998753
No 432
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=83.43 E-value=21 Score=35.77 Aligned_cols=152 Identities=8% Similarity=0.109 Sum_probs=85.4
Q ss_pred EEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE---------eccC------ccchHHHHHhccCCCcEEEEeccCC
Q 015310 69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF---------ELKV------ASNILGKQYSSHQSGTRFIVSCNLD 133 (409)
Q Consensus 69 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi---------El~~------~~~~~~~l~~~~~~~~kiI~S~H~f 133 (409)
.|+|.-.+.=.+..+.++..++.+.+.+.|+++|.+ .+.. +.+.++.+... .+++++.+-.
T Consensus 8 ~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~-~~~~~~~~ll--- 83 (333)
T TIGR03217 8 VTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADV-VKRAKVAVLL--- 83 (333)
T ss_pred CCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHh-CCCCEEEEEe---
Confidence 466633332235668899999999999999999888 2221 11334444432 2345544222
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEE-EcCcc---chhh---hhhcCCCCCcc
Q 015310 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAY-SVGER---GLVS---QLLSPKFNGAL 206 (409)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~-~MG~~---G~~S---Ri~~~~~Gs~l 206 (409)
.|..... +-++.+.+.|+|++.+++..++.+......+..++....+... .|... ..+. +.+.. +|...
T Consensus 84 --~pg~~~~-~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~-~Ga~~ 159 (333)
T TIGR03217 84 --LPGIGTV-HDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES-YGADC 159 (333)
T ss_pred --ccCccCH-HHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh-cCCCE
Confidence 1211112 3468888999999999998887776666676666655544333 33321 1111 22221 34332
Q ss_pred ccccCCCCCCCCCCCHHHHHhhhhhc
Q 015310 207 VYGSLKGTPVLGLPTVESLRQTYKVE 232 (409)
Q Consensus 207 tf~~l~~~sAPGQ~~~~~l~~~~~~~ 232 (409)
.| +. -.-|.++-+++.++++.+
T Consensus 160 i~--i~--DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 160 VY--IV--DSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred EE--Ec--cCCCCCCHHHHHHHHHHH
Confidence 21 11 224677777777777654
No 433
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=83.35 E-value=1.8 Score=43.30 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
..+.||++.|+|.|..|++++.-|...|+.|.-.+|+..+
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~ 197 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLP 197 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCc
Confidence 5678999999999999999999999999878888887553
No 434
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=83.29 E-value=2.4 Score=40.49 Aligned_cols=41 Identities=32% Similarity=0.397 Sum_probs=35.4
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
+|++++|.|+ |+.+++++..+...|++|+++.++.++.+.+
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 185 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELV 185 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5789999995 9999999999999999999999988776554
No 435
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=83.24 E-value=32 Score=34.45 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=94.5
Q ss_pred CCCCHHHHHhhhhhc----c---------ccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecC---c---ccH
Q 015310 218 GLPTVESLRQTYKVE----H---------INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMF---V---DDL 278 (409)
Q Consensus 218 GQ~~~~~l~~~~~~~----~---------i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~---~---~~l 278 (409)
-|++-+++..+++.. . ....+...-+|=.|-. |+-.=+..+.++||....|.... + +.+
T Consensus 14 ~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~epST--RTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl 91 (331)
T PRK02102 14 LDFTPEEIEYLIDLSIELKAAKKAGIEHQYLEGKNIALIFEKTST--RTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESI 91 (331)
T ss_pred HHCCHHHHHHHHHHHHHHHHHhhcCCCcccCCCCEEEEEeCCCCh--hHHHHHHHHHHHcCCCEEEcCcccccCCCCcCH
Confidence 456777777776521 1 0111223445556543 56666789999999998877433 1 567
Q ss_pred HHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCC
Q 015310 279 KKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358 (409)
Q Consensus 279 ~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~ 358 (409)
.+....+... ++++-+=-|-...+-.+ |+..+ + -|++-. ++ ..+=|-...=+.++++.+
T Consensus 92 ~Dt~rvls~y-~D~iviR~~~~~~~~~~-------a~~~~-v-PVINa~-~~--~~HPtQaLaDl~Ti~e~~-------- 150 (331)
T PRK02102 92 EDTARVLGRM-YDGIEYRGFKQEIVEEL-------AKYSG-V-PVWNGL-TD--EWHPTQMLADFMTMKEHF-------- 150 (331)
T ss_pred HHHHHHHhhc-CCEEEEECCchHHHHHH-------HHhCC-C-CEEECC-CC--CCChHHHHHHHHHHHHHh--------
Confidence 7777777544 67776665543322222 22211 1 133321 22 345555555555665433
Q ss_pred CCCCCCCCCCCEEEEEech--hHHHHHHHHHHhCCCeEEEEeC
Q 015310 359 TASFGSPLAGRMFVLAGAG--GAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 359 ~~~~~~~~~~~~vlvlGaG--Gaarai~~aL~~~G~~i~v~nR 399 (409)
..++|.+++++|.+ +++++.+..+..+|++|+++.-
T Consensus 151 -----g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P 188 (331)
T PRK02102 151 -----GPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAP 188 (331)
T ss_pred -----CCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECC
Confidence 24789999999997 7999999999999999988863
No 436
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=83.17 E-value=2.4 Score=40.38 Aligned_cols=41 Identities=32% Similarity=0.308 Sum_probs=34.7
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
++++++|.|+ |+.+++++..+...|++|+++.++.++.+.+
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~ 180 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC 180 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 5789999996 8899999999999999999999887765543
No 437
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.11 E-value=7.6 Score=38.83 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEecC-------CCCC-C---C-------------hhHHHHHHhcCC--CcEEEEeccC--C
Q 015310 24 QVLSNMYQAKAEGADVVEIRLDC-------INNF-Q---P-------------GKDLEIILTKKP--LPVLIVYRPK--W 75 (409)
Q Consensus 24 e~~~~~~~~~~~~aD~vElRlD~-------l~~~-~---~-------------~~~l~~l~~~~~--~PiI~T~R~~--~ 75 (409)
++.+.++++.+.|.|.||+-.-+ |... + + .+.++.+++... .|+.+-+... .
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 34455667777999999998775 3222 1 1 134455555553 4554444321 1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310 76 AGGLYEGDEHKRLEALHLAEDLGADYVDFE 105 (409)
Q Consensus 76 eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE 105 (409)
++| .+.++-.++.+.+.+.|+|||.|=
T Consensus 230 ~~g---~~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 230 RGG---FTEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred CCC---CCHHHHHHHHHHHHHcCCCEEEec
Confidence 234 256777888888888999998763
No 438
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=83.05 E-value=44 Score=32.34 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH---H---hcCCCcEEEEe--ccCCCCCCCCCCHHHHHHHHHHH
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII---L---TKKPLPVLIVY--RPKWAGGLYEGDEHKRLEALHLA 94 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l---~---~~~~~PiI~T~--R~~~eGG~~~~~~~~~~~ll~~~ 94 (409)
..+....+++...|+|+|=.-+=.-.+.+ .++++.+ + +...+|++.-. |.+.-.-.+..+.+.--..-+.+
T Consensus 97 ~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRla 175 (265)
T COG1830 97 QVLVATVEDAIRLGADAVGATVYVGSETE-REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLA 175 (265)
T ss_pred ceeeeeHHHHHhCCCcEEEEEEecCCcch-HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHH
Confidence 33455677777899999999987666544 3344443 3 23589988744 43321111223322222234477
Q ss_pred HHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015310 95 EDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA 154 (409)
Q Consensus 95 ~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga 154 (409)
.++|+|.|=+-+....+-+++++.. -++.||+|== .++.+.+++++......+.||
T Consensus 176 aelGADIiK~~ytg~~e~F~~vv~~--~~vpVviaGG--~k~~~~~~~l~~~~~ai~aGa 231 (265)
T COG1830 176 AELGADIIKTKYTGDPESFRRVVAA--CGVPVVIAGG--PKTETEREFLEMVTAAIEAGA 231 (265)
T ss_pred HHhcCCeEeecCCCChHHHHHHHHh--CCCCEEEeCC--CCCCChHHHHHHHHHHHHccC
Confidence 8899999999999888888888754 2389999853 355556778888887777776
No 439
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=82.98 E-value=2.1 Score=41.22 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCC-----------eEEEEeCC
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGA-----------RVVIFDID 400 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~-----------~i~v~nR~ 400 (409)
.+++..+++++|||.+|-+++.-|.+.++ +|++++|.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 46778899999999999999988876554 58887764
No 440
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=82.94 E-value=0.84 Score=42.55 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=63.4
Q ss_pred EEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccC---------ccchHHHH---H-hccCCCcEEEEeccCC
Q 015310 67 VLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV---------ASNILGKQ---Y-SSHQSGTRFIVSCNLD 133 (409)
Q Consensus 67 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~---------~~~~~~~l---~-~~~~~~~kiI~S~H~f 133 (409)
+.+|-|+...||.+.. +++..+-....++.|++||||=... .++-++++ + ..++....+.+|.=
T Consensus 2 lNvt~dSf~~g~~~~~-~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID-- 78 (210)
T PF00809_consen 2 LNVTPDSFSDGGRKFS-EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID-- 78 (210)
T ss_dssp EEESCCTTTTTTCHHH-HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred EEecCCCCcccCcccC-HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--
Confidence 4567778888887533 3444444667778999999996443 11222222 2 22211345677753
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015310 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 189 (409)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG 189 (409)
|+..+.+..-+ +.|++++==...-.. .-.++.+..+.+.|+|+|.|.
T Consensus 79 --T~~~~v~~~aL----~~g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 79 --TFNPEVAEAAL----KAGADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --ESSHHHHHHHH----HHTSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred --CCCHHHHHHHH----HcCcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 44455554444 448886543333332 444566666678899999998
No 441
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=82.88 E-value=8.1 Score=39.20 Aligned_cols=89 Identities=18% Similarity=0.099 Sum_probs=54.2
Q ss_pred eccCCHHHH----HHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcCCCcEE
Q 015310 17 LMAQSVEQV----LSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKPLPVL 68 (409)
Q Consensus 17 l~~~~~~e~----~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~~PiI 68 (409)
++..+++++ ...++++.+.|.|.||+--=. |... ++ .+.+..+++..+...+
T Consensus 139 mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~ 218 (363)
T COG1902 139 LTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFP 218 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCce
Confidence 444444443 444666778999999997643 1211 11 1334445554555556
Q ss_pred EEeccC-CCCCC-CCCCHHHHHHHHHHHHHcC-CcEEEEe
Q 015310 69 IVYRPK-WAGGL-YEGDEHKRLEALHLAEDLG-ADYVDFE 105 (409)
Q Consensus 69 ~T~R~~-~eGG~-~~~~~~~~~~ll~~~~~~g-~dyvDiE 105 (409)
+.+|-. .|-+. ...+.++..++.+.+.+.| +|||++=
T Consensus 219 vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs 258 (363)
T COG1902 219 VGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVS 258 (363)
T ss_pred EEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEee
Confidence 777833 22211 1236688999999999999 8999974
No 442
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=82.78 E-value=2.4 Score=42.90 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ 403 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k 403 (409)
.|++++|.|+|+.|.+++..+..+|++|+++.++.++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEK 214 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 4789999999999999999999999988777766443
No 443
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=82.75 E-value=3.4 Score=34.05 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=32.2
Q ss_pred EEEEEechhHHHHHHHHHHhCC--Ce-EEEEeCChHHHHhhh
Q 015310 370 MFVLAGAGGAGRALAFGAKSRG--AR-VVIFDIDFEQSLLLL 408 (409)
Q Consensus 370 ~vlvlGaGGaarai~~aL~~~G--~~-i~v~nR~~~ka~~la 408 (409)
++.|+|+|..++.-..++.+.. .+ +.|++++.++++..+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~ 43 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFA 43 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHH
Confidence 5899999999999988888873 45 569999999988753
No 444
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=82.71 E-value=20 Score=34.68 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=64.9
Q ss_pred eccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHH----HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 17 LMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDL----EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 17 l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l----~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
|...+.+.++..+++..+.|||++.+=...-.. +..+.+ ..+....+.|+.+= ..+.+.++
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-eE~~r~~~~v~~l~~~~~~plsID--------------T~~~~v~e 83 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYLDVNAGTAVE-EEPETMEWLVETVQEVVDVPLCID--------------SPNPAAIE 83 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCCch-hHHHHHHHHHHHHHHhCCCCEEEe--------------CCCHHHHH
Confidence 456788888888888889999999888773221 111122 22323346775432 13345677
Q ss_pred HHHHc--CCcE-EEEeccC--ccchHHHHHhccCCCcEEEEeccCCCCCCCH-----hHHHHHHHHHHHcC
Q 015310 93 LAEDL--GADY-VDFELKV--ASNILGKQYSSHQSGTRFIVSCNLDCETPSE-----EDLGYLVSRMQATG 153 (409)
Q Consensus 93 ~~~~~--g~dy-vDiEl~~--~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~-----~~l~~~~~~~~~~g 153 (409)
++++. |+++ =||-... .++.++ + +++.+..+|+-+.+-.++|.. +.+.++++.+.+.|
T Consensus 84 aaL~~~~G~~iINsIs~~~~~~~~~~~-l--~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 84 AGLKVAKGPPLINSVSAEGEKLEVVLP-L--VKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred HHHHhCCCCCEEEeCCCCCccCHHHHH-H--HHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 78877 7554 3554432 222222 2 234566776654433566632 22344444455555
No 445
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=82.66 E-value=11 Score=36.34 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=59.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE--eccCcc-------chHHH---HHhccCCCcEEEEeccCCCCCCCHh
Q 015310 73 PKWAGGLYEGDEHKRLEALHLAEDLGADYVDF--ELKVAS-------NILGK---QYSSHQSGTRFIVSCNLDCETPSEE 140 (409)
Q Consensus 73 ~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi--El~~~~-------~~~~~---l~~~~~~~~kiI~S~H~f~~tp~~~ 140 (409)
+-.+||.+ .+.++-++.-+..++.|+++||| |-..+. +-+++ ++..-+...++.+|.= |+..+
T Consensus 13 SF~dg~~~-~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSID----T~~~~ 87 (257)
T cd00739 13 SFSDGGRF-LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVD----TFRAE 87 (257)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEe----CCCHH
Confidence 44678876 45555556666667899999999 433221 11122 2221123335667753 44444
Q ss_pred HHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEc
Q 015310 141 DLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSV 188 (409)
Q Consensus 141 ~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~M 188 (409)
.+. .+.+.|+|++==+..-+. | .+++.+..+.+.++|.|.+
T Consensus 88 v~e----~al~~G~~iINdisg~~~--~-~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 88 VAR----AALEAGADIINDVSGGSD--D-PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHH----HHHHhCCCEEEeCCCCCC--C-hHHHHHHHHcCCCEEEECC
Confidence 444 444458888653333221 1 4556666777889999877
No 446
>PRK08227 autoinducer 2 aldolase; Validated
Probab=82.50 E-value=24 Score=34.16 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH---H---hcCCCcEEEEeccCCCCCCCCCCHHHHHHH-HHHHH
Q 015310 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII---L---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEA-LHLAE 95 (409)
Q Consensus 23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l---~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l-l~~~~ 95 (409)
..+...+++++..|||+|=.-+-.-.+.+ .+.+..+ . +...+|+|. +- ..|+.... +.+++.. -+.+.
T Consensus 94 ~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-~~~l~~l~~v~~ea~~~G~Plla-~~--prG~~~~~-~~~~ia~aaRiaa 168 (264)
T PRK08227 94 EAVAVDMEDAVRLNACAVAAQVFIGSEYE-HQSIKNIIQLVDAGLRYGMPVMA-VT--AVGKDMVR-DARYFSLATRIAA 168 (264)
T ss_pred ccceecHHHHHHCCCCEEEEEEecCCHHH-HHHHHHHHHHHHHHHHhCCcEEE-Ee--cCCCCcCc-hHHHHHHHHHHHH
Confidence 44555677888899999988886554332 2344333 3 235899998 33 34555432 3334443 34667
Q ss_pred HcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015310 96 DLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA 154 (409)
Q Consensus 96 ~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga 154 (409)
++|+|.|=+.+.. +.+++++. ...+.|+++== .++ +.+++.+.+++..+.||
T Consensus 169 ELGADiVK~~y~~--~~f~~vv~--a~~vPVviaGG--~k~-~~~~~L~~v~~ai~aGa 220 (264)
T PRK08227 169 EMGAQIIKTYYVE--EGFERITA--GCPVPIVIAGG--KKL-PERDALEMCYQAIDEGA 220 (264)
T ss_pred HHcCCEEecCCCH--HHHHHHHH--cCCCcEEEeCC--CCC-CHHHHHHHHHHHHHcCC
Confidence 8999999988864 45666664 35678887742 234 45677888887777886
No 447
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=82.44 E-value=2.3 Score=45.68 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=31.5
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhC----CCeEEEEeCCh
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSR----GARVVIFDIDF 401 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~----G~~i~v~nR~~ 401 (409)
+.++++|+|||+|=+|.|+|+.|.+. |.+|+|+.+..
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~ 59 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD 59 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence 34568999999999999999999986 45899998764
No 448
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=82.27 E-value=49 Score=33.18 Aligned_cols=148 Identities=14% Similarity=0.192 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (409)
Q Consensus 20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (409)
.|.+.-++|+++..+.|||+|=+=+.-. +..+.+..+++..++|++.-+- |+ | .+-..+++.|+
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~~---~~A~al~~I~~~~~iPlVADIH-------Fd-----~-~lAl~a~~~g~ 94 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPDR---ESAAAFEAIKEGTNVPLVADIH-------FD-----Y-RLAALAMAKGV 94 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCCH---HHHHhHHHHHhCCCCCEEEeeC-------CC-----c-HHHHHHHHhcc
Confidence 3556678888888899999995544322 2345677888888999996542 11 1 12234445566
Q ss_pred cEEEEeccCc--cchHHHHH-hccCCCcEE-EEeccC---------C-CCCCC--HhHHHHHHHHHHHcCCCEEEEEeec
Q 015310 100 DYVDFELKVA--SNILGKQY-SSHQSGTRF-IVSCNL---------D-CETPS--EEDLGYLVSRMQATGADIIKLVFSV 163 (409)
Q Consensus 100 dyvDiEl~~~--~~~~~~l~-~~~~~~~ki-I~S~H~---------f-~~tp~--~~~l~~~~~~~~~~gaDivKia~~~ 163 (409)
|-|-|-=-.. ++.++.++ .++..++.+ |+-.|= + ..||. .+...+.++-+.++|-+=+|+-..+
T Consensus 95 dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~Ks 174 (346)
T TIGR00612 95 AKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKA 174 (346)
T ss_pred CeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc
Confidence 6655532221 23344444 334444433 333321 1 12442 1334566777888888888898988
Q ss_pred CCHhHHHHHHHHhcc-CCCCE
Q 015310 164 NDITEIARIFQLLSH-CQVPI 183 (409)
Q Consensus 164 ~~~~D~~~ll~~~~~-~~~p~ 183 (409)
.+..+..+..+++.+ ++.|+
T Consensus 175 Sdv~~~i~ayr~la~~~dyPL 195 (346)
T TIGR00612 175 SDVAETVAAYRLLAERSDYPL 195 (346)
T ss_pred CCHHHHHHHHHHHHhhCCCCc
Confidence 888877666665543 36564
No 449
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=82.24 E-value=1.7 Score=45.44 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ 402 (409)
.+++||||.|-+|-.++..|++.|++++++-+.+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 47899999999999999999999999999877643
No 450
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.21 E-value=44 Score=31.30 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=79.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 015310 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA 94 (409)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 94 (409)
..++.++.+ .+.+.|+|.+-+| |+=... .....++++.+....|+++ .||-.+. + -.+.+
T Consensus 31 ~~~~~e~a~---~~~~~G~~~l~i~-dl~~~~~~~~~~~~~i~~i~~~~~~~l~v------~GGi~~~--~----~~~~~ 94 (241)
T PRK13585 31 YGDPVEVAK---RWVDAGAETLHLV-DLDGAFEGERKNAEAIEKIIEAVGVPVQL------GGGIRSA--E----DAASL 94 (241)
T ss_pred CCCHHHHHH---HHHHcCCCEEEEE-echhhhcCCcccHHHHHHHHHHcCCcEEE------cCCcCCH--H----HHHHH
Confidence 345656554 4456899999888 553211 2234566666667889987 3554322 1 22445
Q ss_pred HHcCCcEEEEeccCc--cchHHHHHhccCCCcEEEEec--c-------CCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310 95 EDLGADYVDFELKVA--SNILGKQYSSHQSGTRFIVSC--N-------LDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (409)
Q Consensus 95 ~~~g~dyvDiEl~~~--~~~~~~l~~~~~~~~kiI~S~--H-------~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~ 163 (409)
++.|++.|.+--... .+.+.++... -+..++++|. + .+.... ..+..+..+++.+.|++-+=+.-..
T Consensus 95 ~~~Ga~~v~iGs~~~~~~~~~~~i~~~-~g~~~i~~sid~~~~~v~~~g~~~~~-~~~~~~~~~~~~~~G~~~i~~~~~~ 172 (241)
T PRK13585 95 LDLGVDRVILGTAAVENPEIVRELSEE-FGSERVMVSLDAKDGEVVIKGWTEKT-GYTPVEAAKRFEELGAGSILFTNVD 172 (241)
T ss_pred HHcCCCEEEEChHHhhChHHHHHHHHH-hCCCcEEEEEEeeCCEEEECCCcccC-CCCHHHHHHHHHHcCCCEEEEEeec
Confidence 568999988754333 2344455422 1234565543 2 111111 1245667777788899866433221
Q ss_pred C----CHhHHHHHHHHhccCCCCEEEE
Q 015310 164 N----DITEIARIFQLLSHCQVPIIAY 186 (409)
Q Consensus 164 ~----~~~D~~~ll~~~~~~~~p~i~~ 186 (409)
. ...|...+-++....+.|+++-
T Consensus 173 ~~g~~~g~~~~~i~~i~~~~~iPvia~ 199 (241)
T PRK13585 173 VEGLLEGVNTEPVKELVDSVDIPVIAS 199 (241)
T ss_pred CCCCcCCCCHHHHHHHHHhCCCCEEEe
Confidence 1 1123333344444457787664
No 451
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=82.17 E-value=2.8 Score=41.17 Aligned_cols=40 Identities=43% Similarity=0.592 Sum_probs=34.3
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.|.++||.|+|++|.+++.-+..+|++++++.++.++.+.
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~ 198 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEF 198 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHH
Confidence 4679999999999999999889999998888888777654
No 452
>PLN02661 Putative thiazole synthesis
Probab=82.14 E-value=1.8 Score=43.70 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=29.4
Q ss_pred CEEEEEechhHHHHHHHHHHhC-CCeEEEEeCCh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDF 401 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~-G~~i~v~nR~~ 401 (409)
..++|+|+|.+|-.+++.|++. |.+|.|+.|+.
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 4699999999999999999976 67999999864
No 453
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=82.13 E-value=1.6 Score=47.69 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=28.1
Q ss_pred EEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
.|||||+|+||.++|..+++.|++|.|+...
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 5999999999999999999999999888754
No 454
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=82.04 E-value=55 Score=32.23 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=76.8
Q ss_pred HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCc---------------cchHHHHH---h
Q 015310 57 EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA---------------SNILGKQY---S 118 (409)
Q Consensus 57 ~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~---------------~~~~~~l~---~ 118 (409)
.++.+..++|+|+=. |.|.. +...-.+..+...+.|+.-|-||-... ++...+|. .
T Consensus 71 ~~I~~~~~iPviaD~----d~GyG--~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~ 144 (292)
T PRK11320 71 RRITDACDLPLLVDI----DTGFG--GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVD 144 (292)
T ss_pred HHHHhccCCCEEEEC----CCCCC--CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHH
Confidence 344455699999875 56653 555556788899999999999997541 12334443 2
Q ss_pred ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015310 119 SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185 (409)
Q Consensus 119 ~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~ 185 (409)
++...-=+|+-.-|--.....+|.+++.+...+.|||++=+-. +++.++..++.+. .+.|+.+
T Consensus 145 a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~-~~~~~~i~~~~~~---~~~Pl~~ 207 (292)
T PRK11320 145 ARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA-MTELEMYRRFADA---VKVPILA 207 (292)
T ss_pred hccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHHHHHHh---cCCCEEE
Confidence 3222223454554422344578888888889999999987753 6777777666554 3567543
No 455
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=82.02 E-value=2.6 Score=40.57 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhC----CC-------eEEEEeCC
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSR----GA-------RVVIFDID 400 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~----G~-------~i~v~nR~ 400 (409)
.+++..+++++|||-+|-+++.-|.+. |. +|++++|.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 567788999999999988888777665 86 49999875
No 456
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=81.98 E-value=2.7 Score=40.44 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=34.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSL 405 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~ 405 (409)
++.+++|.|+|+.|.+++..+...|++ |+++.++.++.+
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~ 168 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLA 168 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 478899999999999999989999996 999999877654
No 457
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=81.86 E-value=34 Score=33.84 Aligned_cols=154 Identities=11% Similarity=0.072 Sum_probs=93.9
Q ss_pred CCCCHHHHHhhhhhc-------------cccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc------ccH
Q 015310 218 GLPTVESLRQTYKVE-------------HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV------DDL 278 (409)
Q Consensus 218 GQ~~~~~l~~~~~~~-------------~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l 278 (409)
-|++-+++..+++.- .....+...-+|=.|-. |+-.=+..+.++||....|..... |.+
T Consensus 11 ~dls~~~l~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~e~ST--RTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl 88 (304)
T PRK00779 11 DDLSPEELEELLDLAAELKKKRKAGEPHPPLKGKTLAMIFEKPST--RTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPI 88 (304)
T ss_pred hhCCHHHHHHHHHHHHHHHhHhhcCCccccCCCCEEEEEecCCCc--hHHHHHHHHHHHcCCcEEEECcccccCCCCcCH
Confidence 356777777766631 11112233445556544 556667899999999888875332 467
Q ss_pred HHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCC
Q 015310 279 KKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358 (409)
Q Consensus 279 ~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~ 358 (409)
.+.+..+... ++++-+=-|....+-.+ |+..+ --|++- .+ -..+=|-...=+.+|++.+
T Consensus 89 ~Dt~~~l~~~-~D~iv~R~~~~~~~~~~-------a~~~~--vPVINa--g~-~~~HPtQaL~Dl~Ti~e~~-------- 147 (304)
T PRK00779 89 EDTARVLSRY-VDAIMIRTFEHETLEEL-------AEYST--VPVING--LT-DLSHPCQILADLLTIYEHR-------- 147 (304)
T ss_pred HHHHHHHHHh-CCEEEEcCCChhHHHHH-------HHhCC--CCEEeC--CC-CCCChHHHHHHHHHHHHHh--------
Confidence 7777766544 66666555544333222 22221 124433 22 2355555544455555433
Q ss_pred CCCCCCCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC
Q 015310 359 TASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 359 ~~~~~~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR 399 (409)
..++|.+++++|- +.++++.+..|..+|++|+++.-
T Consensus 148 -----g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P 184 (304)
T PRK00779 148 -----GSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATP 184 (304)
T ss_pred -----CCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECC
Confidence 2478899999997 67999999999999999888763
No 458
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=81.71 E-value=48 Score=31.41 Aligned_cols=151 Identities=20% Similarity=0.239 Sum_probs=90.9
Q ss_pred HHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH---HHHHHHcCCcEEE
Q 015310 29 MYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA---LHLAEDLGADYVD 103 (409)
Q Consensus 29 ~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l---l~~~~~~g~dyvD 103 (409)
+..+...|||-||+.--+-. ...|+ -.++..++..++|+-.-+|+ .||-|-.++.++.-. ++.+-++|++-|=
T Consensus 14 l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRP--RgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV 91 (241)
T COG3142 14 LLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRP--RGGDFVYSDDELEIMLEDIRLARELGVQGVV 91 (241)
T ss_pred HHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEec--CCCCcccChHHHHHHHHHHHHHHHcCCCcEE
Confidence 34556789999999865543 22332 24555666689999999997 478776776554333 3456677776554
Q ss_pred Eec-----cCccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHHH-HHH
Q 015310 104 FEL-----KVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DITEIAR-IFQ 174 (409)
Q Consensus 104 iEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~D~~~-ll~ 174 (409)
+=. +.+.+.+++|+.+ .+ .+=+.||- |+.+|+ ..+.+++..++| +.+|-+.-. +..|.+. |.+
T Consensus 92 ~G~lt~dg~iD~~~le~Li~a-A~--gL~vTFHrAFD~~~d---~~~ale~li~~G--v~RILTsGg~~sa~eg~~~l~~ 163 (241)
T COG3142 92 LGALTADGNIDMPRLEKLIEA-AG--GLGVTFHRAFDECPD---PLEALEQLIELG--VERILTSGGKASALEGLDLLKR 163 (241)
T ss_pred EeeecCCCccCHHHHHHHHHH-cc--CCceeeehhhhhcCC---HHHHHHHHHHCC--CcEEecCCCcCchhhhHHHHHH
Confidence 432 2233456666643 23 35567887 999997 445566666766 677776654 3444433 334
Q ss_pred HhccC-CCCEEEEEcC
Q 015310 175 LLSHC-QVPIIAYSVG 189 (409)
Q Consensus 175 ~~~~~-~~p~i~~~MG 189 (409)
+..++ +.+.|..+-|
T Consensus 164 li~~a~gri~Im~GaG 179 (241)
T COG3142 164 LIEQAKGRIIIMAGAG 179 (241)
T ss_pred HHHHhcCCEEEEeCCC
Confidence 44444 4455544443
No 459
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=81.71 E-value=41 Score=32.38 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccCcc----------chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015310 82 GDEHKRLEALHLAEDLGADYVDFELKVAS----------NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA 151 (409)
Q Consensus 82 ~~~~~~~~ll~~~~~~g~dyvDiEl~~~~----------~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~ 151 (409)
.+.+...++++..++.|++.|-+=-...+ ++++.....-.+.+.+|++- ++++.++..++.+.+++
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv----~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGV----GANSTREAIELARHAEE 90 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEec----CCccHHHHHHHHHHHHH
Confidence 45555566666666666666554221111 11122222223567778775 34567889999999999
Q ss_pred cCCCEEEEEee---cCCHhHHHHHHHHhcc-CCCCEEEEEc
Q 015310 152 TGADIIKLVFS---VNDITEIARIFQLLSH-CQVPIIAYSV 188 (409)
Q Consensus 152 ~gaDivKia~~---~~~~~D~~~ll~~~~~-~~~p~i~~~M 188 (409)
.|+|.+=+... +.+.+++.+-++...+ .+.|++.++.
T Consensus 91 ~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 91 AGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred cCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 99998776543 2245666665555433 4789988776
No 460
>PLN02697 lycopene epsilon cyclase
Probab=81.70 E-value=1.6 Score=46.44 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=29.0
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..|+|+|+|.+|.+++.+|++.|.+|.++.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 36999999999999999999999999998764
No 461
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.67 E-value=24 Score=32.75 Aligned_cols=119 Identities=14% Similarity=0.194 Sum_probs=69.4
Q ss_pred EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (409)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (409)
+...|...+.++...-++.+.+.|..++|+.++- ....+.++.+++..+- +++-.=|. .+.+ -.+
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~t---p~a~~~I~~l~~~~~~-~~vGAGTV-------l~~e----~a~ 70 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRT---PAALDAIRAVAAEVEE-AIVGAGTI-------LNAK----QFE 70 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---ccHHHHHHHHHHHCCC-CEEeeEeC-------cCHH----HHH
Confidence 4456788899999999999999999999999861 1223456666544432 44322111 1222 345
Q ss_pred HHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310 93 LAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (409)
Q Consensus 93 ~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~ 161 (409)
.+++.|++|+==- .+..+++ ..++.+.-+|=- --||+ | +.++.++|+|++|+--
T Consensus 71 ~ai~aGA~FivSP-----~~~~~vi~~a~~~~i~~iPG----~~Tpt--E----i~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 71 DAAKAGSRFIVSP-----GTTQELLAAANDSDVPLLPG----AATPS--E----VMALREEGYTVLKFFP 125 (201)
T ss_pred HHHHcCCCEEECC-----CCCHHHHHHHHHcCCCEeCC----CCCHH--H----HHHHHHCCCCEEEECC
Confidence 6778888886311 1222333 233344433322 23554 2 4456678999999753
No 462
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=81.59 E-value=2.6 Score=44.84 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=36.3
Q ss_pred CCCCEEEEEechh-HHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 366 LAGRMFVLAGAGG-AGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 366 ~~~~~vlvlGaGG-aarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
+.||+++|-|+|| .|+.++..+.+.+. +|.+++|++-+...
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~ 290 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYL 290 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHH
Confidence 5799999999999 89999999999998 89999999766543
No 463
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.52 E-value=2.3 Score=46.23 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=37.6
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
.++++|+|.|-.|+.++..|.+.|.++++++.|+++.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~ 440 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLR 440 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHH
Confidence 36899999999999999999999999999999999988764
No 464
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=81.49 E-value=24 Score=34.23 Aligned_cols=123 Identities=16% Similarity=0.116 Sum_probs=66.9
Q ss_pred HHHHhcCCCc-EEEEeccCCCCCCCCCCHHHHHHHHHHHHH-cCCcEEEEeccCccchHHHHHhccCCCcEEEE------
Q 015310 57 EIILTKKPLP-VLIVYRPKWAGGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQYSSHQSGTRFIV------ 128 (409)
Q Consensus 57 ~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~------ 128 (409)
+.+.+..+.| ++.-. .- |.+..+.++-.+--.+.++ .|++.|=||=.. +..+.+..+...++.|+.
T Consensus 68 ~~V~r~~~~p~vvaD~---pf-g~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~--~~~~~I~al~~agIpV~gHiGL~p 141 (264)
T PRK00311 68 KAVARGAPRALVVADM---PF-GSYQASPEQALRNAGRLMKEAGAHAVKLEGGE--EVAETIKRLVERGIPVMGHLGLTP 141 (264)
T ss_pred HHHHhcCCCCcEEEeC---CC-CCccCCHHHHHHHHHHHHHHhCCeEEEEcCcH--HHHHHHHHHHHCCCCEeeeecccc
Confidence 3444556776 44323 11 4455566554444344444 899999999752 222223323334555541
Q ss_pred -eccCC------CCCCC-HhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCc
Q 015310 129 -SCNLD------CETPS-EEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE 190 (409)
Q Consensus 129 -S~H~f------~~tp~-~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~ 190 (409)
|.|.+ -+|.. .+++++....+++.|||.+=+=..|. +.. -+++...+.|+|+|+-|+
T Consensus 142 q~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~--~~~---~~i~~~l~iP~igiGaG~ 206 (264)
T PRK00311 142 QSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVPA--ELA---KEITEALSIPTIGIGAGP 206 (264)
T ss_pred eeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH--HHH---HHHHHhCCCCEEEeccCC
Confidence 11111 12322 34677777778899999886654433 222 233344578999988776
No 465
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=81.42 E-value=34 Score=32.11 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=40.4
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CC-----hhHHHHHHhc-CCCcEEEEe
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QP-----GKDLEIILTK-KPLPVLIVY 71 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~-----~~~l~~l~~~-~~~PiI~T~ 71 (409)
+|+.+|..-+...+.++++++.+.|+|.+ -+|.++.. -| .+.++.+++. ++.|+=+++
T Consensus 1 ~i~pSil~ad~~~l~~~i~~l~~~g~~~l--H~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHL 65 (220)
T PRK08883 1 LIAPSILSADFARLGEDVEKVLAAGADVV--HFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHL 65 (220)
T ss_pred CcchhhhhcCHHHHHHHHHHHHHcCCCEE--EEecccCcccCccccCHHHHHHHHHhCCCCCEEEEe
Confidence 36678888899999999999888888886 56776632 11 2456677665 466755554
No 466
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=81.41 E-value=1.9 Score=43.82 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 368 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 368 ~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.+++.|+| .|.+|++++.+|.+.|..|++++|+.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 47899999 89999999999999999999999864
No 467
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.11 E-value=1.8 Score=47.23 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=27.8
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR 399 (409)
..|||||+|+||.+++..+++.|++|.|+..
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence 3699999999999999999999999888853
No 468
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=81.05 E-value=16 Score=36.45 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=31.9
Q ss_pred hcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc
Q 015310 61 TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS 110 (409)
Q Consensus 61 ~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~ 110 (409)
+..+.|+|+.++. .+.+++.++.+.+.+.|+|+|++-+.++.
T Consensus 98 ~~~~~pvi~sI~g--------~~~~e~~~~a~~~~~agad~ielN~scpp 139 (334)
T PRK07565 98 EAVDIPVIASLNG--------SSAGGWVDYARQIEQAGADALELNIYYLP 139 (334)
T ss_pred HhcCCcEEEEecc--------CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4457899999953 24567788888888889999999887643
No 469
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=81.02 E-value=2.2 Score=44.32 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..|++++|+|+|-+|--++..|.++|++|+++.|.
T Consensus 270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 270 YAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 35789999999999999999999999999999875
No 470
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=81.00 E-value=3.3 Score=40.05 Aligned_cols=40 Identities=28% Similarity=0.243 Sum_probs=34.2
Q ss_pred CCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 368 ~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
+.+++|.|+ |+.+.+++..+...|++|+++.++.++.+.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 187 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYL 187 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 458999998 9999999998899999999999988776543
No 471
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=80.95 E-value=3.4 Score=39.63 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=35.0
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
++++++|.|+ |+.+++++..+...|++++++.++.++.+.+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~ 185 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL 185 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 4678999997 9999999999999999988888887776544
No 472
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=80.92 E-value=1.9 Score=46.89 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=29.9
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
-.|+|||+|-+|.++++.|+..|.+|.|+.|.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 35999999999999999999999999999886
No 473
>PRK12831 putative oxidoreductase; Provisional
Probab=80.91 E-value=2.2 Score=44.63 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..+++|+|+|+|-+|--+|..|.++|++|+++.|.
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 35799999999999999999999999999999874
No 474
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=80.65 E-value=2.4 Score=43.10 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=30.7
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
.+++++|+|+|-+|--++..|.+.|.+|+|+.|.
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3678999999999999999999999999998874
No 475
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=80.57 E-value=1.8 Score=46.13 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
..++||+|||+|+|-+|-=|+..|.....+|++.-|+.
T Consensus 179 ~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 179 EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 45789999999999999999999998866999988863
No 476
>PLN02858 fructose-bisphosphate aldolase
Probab=80.38 E-value=2.7 Score=49.82 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=37.2
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
+++-+||.|-+|.+++..|...|.+|+++||+.++++.++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~ 364 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE 364 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6899999999999999999999999999999999987764
No 477
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=80.37 E-value=3.7 Score=39.66 Aligned_cols=41 Identities=29% Similarity=0.261 Sum_probs=34.8
Q ss_pred CCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+++++|.|++ +.+++++..+...|++|+++.++.++.+.+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~ 207 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA 207 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 46799999986 799999999999999999999988776543
No 478
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=80.36 E-value=53 Score=30.97 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=43.0
Q ss_pred eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CC-----hhHHHHHHhc-CCCcEEEEec
Q 015310 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QP-----GKDLEIILTK-KPLPVLIVYR 72 (409)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~-----~~~l~~l~~~-~~~PiI~T~R 72 (409)
+|+.+|..-+...+.++++++.+.|+|.+ -+|.++.. -| .+.++.+++. ++.|+=+++=
T Consensus 5 ~i~pSil~ad~~~l~~~i~~l~~~g~d~l--HiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLM 70 (223)
T PRK08745 5 AIAPSILSADFARLGEEVDNVLKAGADWV--HFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLM 70 (223)
T ss_pred EEEeehhhcCHHHHHHHHHHHHHcCCCEE--EEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEec
Confidence 68999999999999999999888889986 56776632 11 2456677665 4777655553
No 479
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=80.29 E-value=2.3 Score=44.30 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=35.6
Q ss_pred CEEEEEec-hhHHHHHHHHHHhC-------CC--eEEEEeCChHHHHhhh
Q 015310 369 RMFVLAGA-GGAGRALAFGAKSR-------GA--RVVIFDIDFEQSLLLL 408 (409)
Q Consensus 369 ~~vlvlGa-GGaarai~~aL~~~-------G~--~i~v~nR~~~ka~~la 408 (409)
-+|.|+|+ |-+|-+++|.|... |. +|.+++++.++++..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~a 150 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVA 150 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHH
Confidence 47999999 99999999999988 75 7999999999988765
No 480
>PLN02253 xanthoxin dehydrogenase
Probab=80.19 E-value=2.4 Score=40.45 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=33.6
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
+-++.=|+||.|++++..|.+.|++|++++|+.++.+++
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~ 58 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNV 58 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 457788999999999999999999999999987766544
No 481
>PTZ00058 glutathione reductase; Provisional
Probab=80.19 E-value=2.1 Score=45.93 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=29.0
Q ss_pred EEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
.++|||+|.+|.++|..++++|.+|.|+.+.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 5999999999999999999999999999875
No 482
>PLN02702 L-idonate 5-dehydrogenase
Probab=80.15 E-value=3.5 Score=41.09 Aligned_cols=39 Identities=33% Similarity=0.467 Sum_probs=33.3
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL 405 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~ 405 (409)
.+.+++|+|+|+.+.+++..+...|+ .|++++++.++.+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~ 220 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLS 220 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 47899999999999999999999999 6888888766654
No 483
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=80.15 E-value=3.6 Score=41.18 Aligned_cols=40 Identities=30% Similarity=0.549 Sum_probs=34.1
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~ 406 (409)
.|.+++|.|+|++|.+++..+...|+ .|+++.++.++.+.
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~ 223 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEK 223 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 47899999999999999988899999 58888888777554
No 484
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=80.03 E-value=3.5 Score=39.89 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.|.+++|.|+ |+.|.+++..+..+|++++++.++.++.+.+
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~ 180 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAEL 180 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 4678999987 8899999999999999888888877776554
No 485
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.03 E-value=2.7 Score=45.56 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=36.9
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL 408 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la 408 (409)
.+++|+|.|..|+.++..|.+.|.++++++.|+++.+.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~ 440 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMR 440 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHH
Confidence 5799999999999999999999999999999999988763
No 486
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=80.00 E-value=3.6 Score=39.41 Aligned_cols=41 Identities=34% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.|.+++|.|+ |+.+.+++..+...|++|+.+.++.++.+.+
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 173 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGL 173 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4789999998 8999999999999999999888988876654
No 487
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=79.83 E-value=5.9 Score=36.34 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=68.4
Q ss_pred ceEEeeeccCCcccCCHHhHHHHHHhcC-CCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHH
Q 015310 238 TKVFGLISKPVGHSKGPILHNPTFRHVN-YNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316 (409)
Q Consensus 238 ~~~~~viG~pi~hS~SP~ihn~~f~~~g-l~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~ 316 (409)
++++++.|+|=..|.|-.+-+.+.+.+. -.+.+..+++.+++. ..+ .+.. +. .+.+.+..+.
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~--~~~-----~~~~----~~------~~~~~~~~~~ 63 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAP--EDL-----LYAR----FD------SPALKTFTEQ 63 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCCh--HHH-----Hhcc----CC------CHHHHHHHHH
Confidence 4788999999999999998888776543 224455555433221 111 1100 00 1245566677
Q ss_pred hccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHH
Q 015310 317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGR 381 (409)
Q Consensus 317 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaar 381 (409)
+..+..|++-. - =||-.+.|.++.+-+.+. ...+++|.++++++||...
T Consensus 64 i~~AD~iIi~t-P----~Y~~s~pg~LKn~iD~l~-----------~~~l~~K~v~iiat~G~~~ 112 (191)
T PRK10569 64 LAQADGLIVAT-P----VYKASFSGALKTLLDLLP-----------ERALEHKVVLPLATGGSVA 112 (191)
T ss_pred HHHCCEEEEEC-C----ccCCCCCHHHHHHHHhCC-----------hhhhCCCEEEEEEecCCch
Confidence 78888887651 1 156666788776654331 1347899999999988644
No 488
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.74 E-value=3.6 Score=40.61 Aligned_cols=41 Identities=37% Similarity=0.371 Sum_probs=34.4
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHHh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSLL 406 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~~ 406 (409)
.+|.+++|.|+|+.|.+++.-+...|++ |+++.++.++.+.
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~ 202 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEF 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 3578999999999999998888899995 8888888777553
No 489
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=79.73 E-value=3.9 Score=39.72 Aligned_cols=41 Identities=34% Similarity=0.332 Sum_probs=34.4
Q ss_pred CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+.+++|.| +|+.+.+++..+...|++|+++.++.++.+.+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~ 186 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWL 186 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 468999999 59999999999999999988888887765543
No 490
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=79.73 E-value=43 Score=35.04 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=90.2
Q ss_pred CCCeeEEEeeccC-CHHHHHHHHHHH-----HhcC----CCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCC
Q 015310 8 KNTTMICAPLMAQ-SVEQVLSNMYQA-----KAEG----ADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAG 77 (409)
Q Consensus 8 ~~~~~icv~l~~~-~~~e~~~~~~~~-----~~~~----aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG 77 (409)
.|+|.|++-|... +.+++...++.. ...| +|+|=+|...-+...-...++.+.+..+.|+++--
T Consensus 89 ~np~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT------ 162 (450)
T PRK04165 89 FNPTGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLILCS------ 162 (450)
T ss_pred CCCCEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeC------
Confidence 5789999988443 236666666665 3445 99998888654211112334444444688976542
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCE
Q 015310 78 GLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADI 156 (409)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDi 156 (409)
..-+.++++++.+++.+-+=+....+-.+.+. .+++.+..+|++.- ..+.+.++.+++.+.|-
T Consensus 163 --------~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~------dl~~L~~lv~~~~~~GI-- 226 (450)
T PRK04165 163 --------EDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAP------NLEELKELVEKLQAAGI-- 226 (450)
T ss_pred --------CCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEch------hHHHHHHHHHHHHHcCC--
Confidence 22346677777775521111111112223333 23445778888542 26788999999999885
Q ss_pred EEEEeecC------CHhHHHHHHHHh--c---cCCCCEEEEEc
Q 015310 157 IKLVFSVN------DITEIARIFQLL--S---HCQVPIIAYSV 188 (409)
Q Consensus 157 vKia~~~~------~~~D~~~ll~~~--~---~~~~p~i~~~M 188 (409)
-++..=|- +.++..++-++. . ....|+++...
T Consensus 227 ~dIILDPg~ggf~ksl~~~~~iRr~Al~~~~~~lgyPil~~~s 269 (450)
T PRK04165 227 KDLVLDPGTENIKETLDDFVQIRRAAIKKGDRPLGYPIIAFPI 269 (450)
T ss_pred CcEEECCCCchhhhhHHHHHHHHhhhhhcccccCCCCEEEcch
Confidence 67776663 344444333331 2 23789887554
No 491
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=79.72 E-value=67 Score=31.78 Aligned_cols=156 Identities=14% Similarity=0.153 Sum_probs=97.3
Q ss_pred CCCCHHHHHhhhhhc----c----------ccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc------cc
Q 015310 218 GLPTVESLRQTYKVE----H----------INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV------DD 277 (409)
Q Consensus 218 GQ~~~~~l~~~~~~~----~----------i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~ 277 (409)
.|++.+++..+++.- . ........-+|=.| ..|+-.=+..+..+||-...+..-.. |.
T Consensus 12 ~d~s~~ei~~l~~~A~~lk~~~~~~~~~~~~L~gk~~~~lF~~p--STRTR~SFe~A~~~LGg~~i~l~~~~~~~~kgEs 89 (305)
T PRK00856 12 EDLSREEIELLLDTAEEFKEVLRREVKKVPLLRGKTVANLFFEP--STRTRLSFELAAKRLGADVINFSASTSSVSKGET 89 (305)
T ss_pred hhCCHHHHHHHHHHHHHHHhhhhcCCcccccCCCcEEEEEeccC--CcchHHHHHHHHHHcCCcEEEeCCCcccCCCCcC
Confidence 456777777776521 1 01112234466666 45677778899999999887765321 56
Q ss_pred HHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCC
Q 015310 278 LKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKN 357 (409)
Q Consensus 278 l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~ 357 (409)
+++..+.+...++.++-+=.|-...+..+... + .+- |++-. +| ..-+=|-...=+.++.+.+
T Consensus 90 ~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~----~-~vP----VINa~-~g-~~~HPtQ~LaDl~Ti~e~~------- 151 (305)
T PRK00856 90 LADTIRTLSAMGADAIVIRHPQSGAARLLAES----S-DVP----VINAG-DG-SHQHPTQALLDLLTIREEF------- 151 (305)
T ss_pred HHHHHHHHHhcCCCEEEEeCCChHHHHHHHHH----C-CCC----EEECC-CC-CCCCcHHHHHHHHHHHHHh-------
Confidence 78877777666677877776644433333222 1 122 22220 22 2235555555555655433
Q ss_pred CCCCCCCCCCCCEEEEEech---hHHHHHHHHHHhCCCeEEEEeC
Q 015310 358 GTASFGSPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDI 399 (409)
Q Consensus 358 ~~~~~~~~~~~~~vlvlGaG---Gaarai~~aL~~~G~~i~v~nR 399 (409)
..++|.+++++|-+ .++++.+.++..+|++++++.-
T Consensus 152 ------G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P 190 (305)
T PRK00856 152 ------GRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAP 190 (305)
T ss_pred ------CCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECC
Confidence 24789999999984 7999999999999999888763
No 492
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=79.66 E-value=29 Score=33.66 Aligned_cols=110 Identities=11% Similarity=0.079 Sum_probs=67.2
Q ss_pred EEeccCCCC-CCCCCCHHHHHHHHHHHHHcCCcEEEEeccC---------cc---chHHHHHhccCCCcEEEEec-----
Q 015310 69 IVYRPKWAG-GLYEGDEHKRLEALHLAEDLGADYVDFELKV---------AS---NILGKQYSSHQSGTRFIVSC----- 130 (409)
Q Consensus 69 ~T~R~~~eG-G~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~---------~~---~~~~~l~~~~~~~~kiI~S~----- 130 (409)
.|+|.-+|. +....+.++..++...+.+.|+++|++=... .+ +.++.+... ..++++.+-.
T Consensus 4 tTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~ 82 (275)
T cd07937 4 TTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNL 82 (275)
T ss_pred CcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhcccccc
Confidence 377754443 1224677899999999999999998774311 12 233333322 2345544211
Q ss_pred cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCC
Q 015310 131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180 (409)
Q Consensus 131 H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~ 180 (409)
.-+...|. +-....++...+.|.|++.+....++.+......+..++..
T Consensus 83 ~~~~~~p~-~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G 131 (275)
T cd07937 83 VGYRHYPD-DVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAG 131 (275)
T ss_pred cCccCCCc-HHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCC
Confidence 11233442 23566778888899999999998888776666666655444
No 493
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=79.62 E-value=4.1 Score=38.95 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=34.4
Q ss_pred CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL 406 (409)
Q Consensus 367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~ 406 (409)
.+++++|.|+ |+.+++++..+...|++|+++.++.++.+.
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 179 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAA 179 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4789999995 889999999999999999999998877653
No 494
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=79.61 E-value=4 Score=38.82 Aligned_cols=41 Identities=32% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
+|.+++|.| +|+++.+++..+..+|++|+++.++.++.+.+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 578999999 59999999999999999988888887776543
No 495
>PRK13748 putative mercuric reductase; Provisional
Probab=79.55 E-value=2.3 Score=45.29 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=29.9
Q ss_pred CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (409)
Q Consensus 369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~ 400 (409)
..++|||+|.+|.+++..|+++|.+|.|+.|.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 46999999999999999999999999999986
No 496
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=79.40 E-value=8.8 Score=39.35 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=41.8
Q ss_pred EEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEec-----------------hhHHHHHHHHHHhCCCeEEE
Q 015310 334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVI 396 (409)
Q Consensus 334 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGa-----------------GGaarai~~aL~~~G~~i~v 396 (409)
|---+..-++..+.+.+.. +.+++|++++|-|. |.+|++++.++...|++|++
T Consensus 161 g~~~~~~~i~~~v~~~~~~----------~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~ 230 (390)
T TIGR00521 161 GRLAEPETIVKAAEREFSP----------KEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTL 230 (390)
T ss_pred CCCCCHHHHHHHHHHHHhh----------ccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEE
Confidence 3344555566666555431 13578999999987 56999999999999999888
Q ss_pred EeCCh
Q 015310 397 FDIDF 401 (409)
Q Consensus 397 ~nR~~ 401 (409)
+.+..
T Consensus 231 ~~g~~ 235 (390)
T TIGR00521 231 ITGPV 235 (390)
T ss_pred eCCCC
Confidence 77653
No 497
>PLN02487 zeta-carotene desaturase
Probab=79.31 E-value=2.5 Score=45.48 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
+++++|+|+|-+|-++++.|.+.|.+|+|+.+..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 3589999999999999999999999999998753
No 498
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=79.26 E-value=2.2 Score=48.71 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=33.1
Q ss_pred CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
-.|++|.|||+|.+|.|++-.|.+.|..|+|+.|+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 358999999999999999999999999999999873
No 499
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=79.25 E-value=2.3 Score=44.46 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (409)
Q Consensus 365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~ 401 (409)
.++||+|+|+|+|-.|.-++..|...+.+|+++.|..
T Consensus 201 ~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 201 PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4578999999999999999999999877999998853
No 500
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.23 E-value=4.1 Score=39.64 Aligned_cols=41 Identities=34% Similarity=0.411 Sum_probs=34.7
Q ss_pred CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407 (409)
Q Consensus 367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l 407 (409)
.+.+++|.|+|+.+.+++..+..+|++|+++.++.++.+.+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~ 205 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELA 205 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 46789999999999999999999999988888887776543
Done!