BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015311
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex
pdb|3T5V|D Chain D, Sac3:thp1:sem1 Complex
Length = 316
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 24/226 (10%)
Query: 158 FVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQ 217
F++DR RS+RQD QN +A++ E+IV+ H++ H + LEQ
Sbjct: 35 FLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQ----ELEQ 90
Query: 218 LTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-----DSNGQPVGE--------S 264
L K+L +L +Y+ RSS EAEFR++ +L + D N Q + +
Sbjct: 91 LHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQ 150
Query: 265 LSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEV 323
++L FR V S ++ + + F Y RF + + + L ++ ++ ++
Sbjct: 151 MALCFRRVISNSAYTERGFVKTENCLNF----YARFFQLMQSPSLPLLMGFFLQMHLTDI 206
Query: 324 RSLALCCIHNCCYKLH-PYPLGHLSKVLMMEE-SDVELFCNAYGLQ 367
R AL + + K H P P +L +L+ ++ FCN Y ++
Sbjct: 207 RFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIE 252
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 214 NLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRH 271
+L Q TK + LY R + E EF + + LD G + E+L LW RH
Sbjct: 137 SLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRH 194
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 303 TVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKL 338
T+AAEA LQ ++EP I + ++ + N CY L
Sbjct: 351 TMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNL 386
>pdb|3L6U|A Chain A, Crystal Structure Of Abc-Type Sugar Transport System,
Periplasmic Component From Exiguobacterium Sibiricum
pdb|3L6U|B Chain B, Crystal Structure Of Abc-Type Sugar Transport System,
Periplasmic Component From Exiguobacterium Sibiricum
Length = 293
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 210 LHYLNLEQLTKALTSLYNLY------EANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGE 263
L +++L+ +T+L ++Y EA ++ P+ + RS V+ + SN Q +GE
Sbjct: 58 LEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRXIRSDAVVSSITSNNQXIGE 117
Query: 264 SLSLWFRH 271
L+ + ++
Sbjct: 118 QLASYIKN 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,952,410
Number of Sequences: 62578
Number of extensions: 324005
Number of successful extensions: 754
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 7
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)