Query 015311
Match_columns 409
No_of_seqs 173 out of 501
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_A Nuclear mRNA export pro 100.0 1.3E-62 4.5E-67 486.6 27.8 259 122-395 2-280 (316)
2 4b0z_A RPN12, 26S proteasome r 99.9 5.4E-26 1.9E-30 215.5 19.6 203 138-377 11-225 (229)
3 4b4t_T 26S proteasome regulato 99.9 1.9E-25 6.5E-30 217.0 16.3 190 155-369 19-229 (274)
4 1rz4_A Eukaryotic translation 98.2 3.7E-05 1.3E-09 72.3 15.1 166 177-378 22-189 (226)
5 3txn_A 26S proteasome regulato 95.0 0.26 8.9E-06 49.7 13.2 110 243-360 220-336 (394)
6 3t5x_A PCI domain-containing p 91.2 0.64 2.2E-05 42.3 8.2 99 287-385 85-196 (203)
7 4b4t_O 26S proteasome regulato 89.2 4.5 0.00015 40.3 13.2 120 241-367 208-337 (393)
8 4b4t_R RPN7, 26S proteasome re 88.8 0.96 3.3E-05 45.5 8.0 90 279-372 283-383 (429)
9 3t5v_B Nuclear mRNA export pro 87.5 1.7 5.7E-05 44.6 8.9 117 286-405 300-449 (455)
10 3chm_A COP9 signalosome comple 76.4 7.1 0.00024 34.5 7.4 79 282-368 59-142 (169)
11 4b4t_Q 26S proteasome regulato 72.5 65 0.0022 30.3 16.2 81 278-362 292-378 (434)
12 4b4t_S RPN3, 26S proteasome re 69.8 19 0.00064 37.5 9.8 69 287-358 347-420 (523)
13 4b4t_P 26S proteasome regulato 59.3 96 0.0033 30.9 12.7 80 280-362 291-381 (445)
14 1ufm_A COP9 complex subunit 4; 43.9 27 0.00094 27.0 4.4 37 322-361 15-51 (84)
15 2jya_A AGR_C_3324P, uncharacte 24.3 32 0.0011 28.1 1.8 23 349-371 55-78 (106)
16 3oio_A Transcriptional regulat 24.0 1.5E+02 0.005 23.1 5.9 47 319-369 55-103 (113)
17 2heo_A Z-DNA binding protein 1 24.0 1.3E+02 0.0044 21.6 5.1 49 322-374 10-61 (67)
18 3oou_A LIN2118 protein; protei 22.8 1.7E+02 0.0057 22.5 5.9 46 319-368 53-100 (108)
19 2k9s_A Arabinose operon regula 22.6 1.7E+02 0.0058 22.4 5.9 46 319-368 52-99 (107)
20 3mkl_A HTH-type transcriptiona 22.1 2E+02 0.0068 22.6 6.4 47 319-369 54-102 (120)
21 2lju_A Putative oxidoreductase 21.8 48 0.0016 27.1 2.4 23 349-371 63-86 (108)
22 3lsg_A Two-component response 20.4 2E+02 0.0068 21.8 5.9 46 319-368 51-98 (103)
23 3mn2_A Probable ARAC family tr 20.1 2.6E+02 0.009 21.3 6.6 48 319-368 50-99 (108)
No 1
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-62 Score=486.55 Aligned_cols=259 Identities=26% Similarity=0.384 Sum_probs=223.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCCCCCchhhhHHhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHhhhhhcc
Q 015311 122 EVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSS 201 (409)
Q Consensus 122 ~~~P~dVRP~~VL~kT~~yLl~~~~~~~~~~~~~y~Fi~DRlRsIRQDltvQ~i~~~~~i~vlE~i~RF~I~s~~~L~~~ 201 (409)
+|+|++||||+||++||+||+++|... +..+|+||||||||||||||||++.++++|.|||+||||||+|+|+||..
T Consensus 2 ~P~P~~vRP~~vL~~Tl~yL~~~~~~~---~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~ 78 (316)
T 3t5v_A 2 SPLPSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKS 78 (316)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTGGG---TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCChhhcCCHHHHHHHHHHHHHHHHhc---chhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhC
Confidence 689999999999999999999987653 35799999999999999999999999999999999999999999999986
Q ss_pred CCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHHhhCCchhhcCHh
Q 015311 202 CSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE 281 (409)
Q Consensus 202 ~~d~~f~~~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~~l~~~L~~~l~~l~~~i~~s~~ 281 (409)
. .+|+ .++|.+|+++||++|+++|++.++.|..++||+||+||+||++|++++ +...+..||++++++|.
T Consensus 79 ~--~~f~--~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~~------~~~~l~~Lp~~i~~~p~ 148 (316)
T 3t5v_A 79 N--VEFS--LQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQ------YDENIQRLPKHIFQDKL 148 (316)
T ss_dssp C--CCCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCTH------HHHHHTTSCHHHHTSHH
T ss_pred C--Cccc--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccch------HHHHHHhCCHHHhcCHH
Confidence 4 3464 789999999999999999999988888999999999999999998753 22456789999999999
Q ss_pred HHHHHHHHHHHH---------------hCcHHHHHHHHHh-ccchHHHHHHHHhHHHHHHHHHHHHHhhccC--CCCcCH
Q 015311 282 MWFARQALRYFQ---------------MGNYRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYK--LHPYPL 343 (409)
Q Consensus 282 v~~Al~l~~a~~---------------~gNy~rFFrLl~~-~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk--~~~~Pl 343 (409)
|++|+.+..|+. .|||++||+++++ .+|||++|+|+.||++||..||++|++| |+ ..++|+
T Consensus 149 Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~ka-y~~k~~~~pl 227 (316)
T 3t5v_A 149 VQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHT-LNKKHKPIPF 227 (316)
T ss_dssp HHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHH-SCTTCCCEEH
T ss_pred HHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCcCH
Confidence 999999999986 4899999999964 3899999999999999999999999995 63 358999
Q ss_pred HHHHHHHcCCc-hhHHHHHHHhCCeecccCCCccc-cccCCCccCCCCCCcccc
Q 015311 344 GHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKL-LPTKQTTFCRPKGGLQNY 395 (409)
Q Consensus 344 ~~L~~~L~fd~-~e~~~fc~~~GL~~~~d~~g~~~-l~~k~~~f~~p~~~~~~~ 395 (409)
++|+++|+|++ +|+.+||++|||++..+ +|..+ ..++++.|.+++..+.+-
T Consensus 228 ~~L~~~L~Fds~ee~~~F~~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~ 280 (316)
T 3t5v_A 228 IYLENMLLFNNRQEIIEFCNYYSIEIING-DAADLKTLQHYSHKLSETQPLKKT 280 (316)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHTTCCEETT-TEECGGGCCCSSSSCTTSCCCCCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHCCCeEeCC-CCchHHhhcchhccccccCCCcch
Confidence 99999999986 57999999999999743 45433 235677777776655543
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.4e-26 Score=215.46 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=165.4
Q ss_pred HHHHHHHHcCCCCCchhhhHHhhhhhhhhhhhhhhhhccC--------chhHHHHHHHHHHHHHHhhhhhccCCCCCCCh
Q 015311 138 LNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVN--------DKAINMFEKIVKFHVISHHKLRSSCSSSSISP 209 (409)
Q Consensus 138 ~~yLl~~~~~~~~~~~~~y~Fi~DRlRsIRQDltvQ~i~~--------~~~i~vlE~i~RF~I~s~~~L~~~~~d~~f~~ 209 (409)
++.|.+.+..+ .|+.+++.+..|++|||.|++.. ..|.+|||. +++++.+.+|
T Consensus 11 l~~L~~~~~~~------d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~--------~a~~al~~~D----- 71 (229)
T 4b0z_A 11 LNHLADLYDRK------DWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEY--------GVLVSIQTCD----- 71 (229)
T ss_dssp SHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHH--------HHHHHHHTTC-----
T ss_pred HHHHHHHHHhc------cHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH--------HHHHHHHcCC-----
Confidence 34566666653 58999999999999999999842 368899999 4455555544
Q ss_pred hhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHHhhCCch--hhcCHhHHHHHH
Q 015311 210 LHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSP--IIKSKEMWFARQ 287 (409)
Q Consensus 210 ~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~~l~~~L~~~l~~l~~~--i~~s~~v~~Al~ 287 (409)
.++|++|+++|+.+|.+.. ..++++.||.+|+||+.|..++. .+ +...+..+|.+ +.++|.|++|++
T Consensus 72 -----~~~F~~~~~qLk~~Y~~~~---~~s~~~~e~~~~~LL~lL~~~~~--~e-f~~~le~l~~~~~~~~~~~I~~al~ 140 (229)
T 4b0z_A 72 -----IESFARYASQVIPFYHDSL---VPSSRMGLVTGLNLLYLLSENRI--AE-FHTALESVPDKSLFERDPYVEWVIS 140 (229)
T ss_dssp -----HHHHHHHHHHHHHHHSSCC---CCCTTHHHHHHHHHHHHHHTTCH--HH-HHHHHHHCSCTTHHHHCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHccC---CCCccHHHHHHHHHHHHHHcCCc--hH-HHHHHHhcChHHHhhcCHHHHHHHH
Confidence 8999999999999998753 35789999999999999876652 22 33446667654 578999999999
Q ss_pred HHHHHHhCcHHHHHHHHHhccc-hHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCc-hhHHHHHHHhC
Q 015311 288 ALRYFQMGNYRRFLSTVAAEAS-YLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYG 365 (409)
Q Consensus 288 l~~a~~~gNy~rFFrLl~~~~~-~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~-~e~~~fc~~~G 365 (409)
|.+|+..|||.+||++++ .+| ...+|+|+.+++.+|..|+.+|.+ +|. .+|+++++++|+|++ +|+++||+.+|
T Consensus 141 l~~al~~GnY~kff~l~~-~~p~~~~~~~~~~l~~~vR~~~l~~i~k-aY~--~i~l~~~~~~L~f~s~~e~~~f~~~~g 216 (229)
T 4b0z_A 141 LEQNVMEGAFDKVASMIR-SCNFPEFSYFMKIVMSMVRNEIATCAEK-VYS--EIPLSNATSLLYLENTKETEKLAEERG 216 (229)
T ss_dssp HHHHHHTTCHHHHHHHHH-TCCCGGGHHHHHHHHHHHHHHHHHHHHH-HCS--EEEHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh-cCccchHHHHHHHHHHHHHHHHHHHHHH-HcC--CCCHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 999999999999999885 565 456999999999999999999999 584 699999999999987 57999999999
Q ss_pred CeecccCCCccc
Q 015311 366 LQTCIDEVGNKL 377 (409)
Q Consensus 366 L~~~~d~~g~~~ 377 (409)
..+. ||.++
T Consensus 217 w~i~---dg~i~ 225 (229)
T 4b0z_A 217 WDIR---DGVIY 225 (229)
T ss_dssp CEEE---TTEEE
T ss_pred CEEe---CCEEe
Confidence 9984 56443
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-25 Score=217.01 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=138.1
Q ss_pred hhHHhhhhhhhhhhhhhhhhccCc--------------hhHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhhcHHHHHH
Q 015311 155 IHDFVFDRTRSVRQDLIMQNIVND--------------KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 220 (409)
Q Consensus 155 ~y~Fi~DRlRsIRQDltvQ~i~~~--------------~~i~vlE~i~RF~I~s~~~L~~~~~d~~f~~~~~~n~eql~k 220 (409)
.|+.+.+.|..++++||.|++-.+ .|.+|||. +++++.+.+| +++|++
T Consensus 19 d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~--------~a~~si~~~D----------~~~F~~ 80 (274)
T 4b4t_T 19 DYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEV--------GALASIQTFN----------FDSFEN 80 (274)
T ss_dssp ------------------------------------------CHHH--------HHHCCSSCSS----------HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHH--------HHHHHHHcCC----------HHHHHH
Confidence 578888999999999999887421 35689999 6667667655 889999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCC-chhhhHHHHHhhCC---chhhcCHhHHHHHHHHHHHHhCc
Q 015311 221 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQ-PVGESLSLWFRHVP---SPIIKSKEMWFARQALRYFQMGN 296 (409)
Q Consensus 221 cL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~-~l~~~L~~~l~~l~---~~i~~s~~v~~Al~l~~a~~~gN 296 (409)
|+++|+.+|.+.+.....++|+.||.||+|||.|..++. .+. ..+..|| .++.++|.|++|++|..|+..||
T Consensus 81 ~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh----~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGn 156 (274)
T 4b4t_T 81 YFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFH----SELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGS 156 (274)
T ss_dssp HHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHH----HHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHH----HHHHhcchhhHhHhcChHHHHHHHHHHHHHcCC
Confidence 999999999998776667899999999999998865442 232 2344566 46788999999999999999999
Q ss_pred HHHHHHHHHh--ccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCc-hhHHHHHHHhCCeec
Q 015311 297 YRRFLSTVAA--EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTC 369 (409)
Q Consensus 297 y~rFFrLl~~--~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~-~e~~~fc~~~GL~~~ 369 (409)
|.+||+++++ ..+++.+|+|+.+++.+|..|+.+|.+ +|+ ++|+..++++|+|++ +|+.+||+.+|..+.
T Consensus 157 Y~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~k-aY~--~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~ 229 (274)
T 4b4t_T 157 YQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTEL-SYD--FLPLSNIKALLFFNNEKETEKFALERNWPIV 229 (274)
T ss_dssp SHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HCS--SCCHHHHHHHHTCCSHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHh--hcCHHHHHHHhCCCCHHHHHHHHHHcCCEEe
Confidence 9999999864 235789999999999999999999999 585 699999999999997 479999999999884
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=98.17 E-value=3.7e-05 Score=72.27 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=112.0
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcC
Q 015311 177 NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDS 256 (409)
Q Consensus 177 ~~~~i~vlE~i~RF~I~s~~~L~~~~~d~~f~~~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~ 256 (409)
|+..+..+|+.+. ..+.++. |+ .+ -+-++. .+|.-. +.....+..+..+|..|.+
T Consensus 22 np~~l~~le~Yv~-------qq~~~~~---YD------~~-anlalL---klYq~~-----p~~~~~~ii~~iLlk~L~~ 76 (226)
T 1rz4_A 22 NPENLATLERYVE-------TQAKENA---YD------LE-ANLAVL---KLYQFN-----PAFFQTTVTAQILLKALTN 76 (226)
T ss_dssp CGGGHHHHHHHHH-------HHHHHTC---CC------HH-HHHHHH---HHHHHS-----GGGCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH-------HHHhccc---cc------HH-HHHHHH---HHHhcC-----CcccchhHHHHHHHHHHHc
Confidence 6888999999543 2223322 32 11 222333 344332 2344578888877766644
Q ss_pred CC-CchhhhHHHHHhhCCchhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHhccchHHHHHHHHhHHHHHHHHHHHHHhhc
Q 015311 257 NG-QPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCC 335 (409)
Q Consensus 257 ~~-~~l~~~L~~~l~~l~~~i~~s~~v~~Al~l~~a~~~gNy~rFFrLl~~~~~~L~~cll~~~~~~vR~~AL~~i~~a~ 335 (409)
.. +++. ..+.-||+.+..++.|+..+.+...+..|+|..||+.+.+. +-+ ...+..|...||......+.+ +
T Consensus 77 ~p~~DF~----~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~-~~l-~~~i~gf~dsIR~~I~~~i~~-a 149 (226)
T 1rz4_A 77 LPHTDFT----LCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN-MDL-LEGITGFEDSVRKFICHVVGI-T 149 (226)
T ss_dssp TTSTHHH----HHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTT-CHH-HHTSTTHHHHHHHHHHHHHHH-H
T ss_pred CCHHHHH----HHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC-hhH-HHHHhHHHHHHHHHHHHHHHH-H
Confidence 32 2222 22334788898999999999999999999999999987432 211 123334778899999999998 5
Q ss_pred cCCCCcCHHHHHHHHcC-CchhHHHHHHHhCCeecccCCCcccc
Q 015311 336 YKLHPYPLGHLSKVLMM-EESDVELFCNAYGLQTCIDEVGNKLL 378 (409)
Q Consensus 336 yk~~~~Pl~~L~~~L~f-d~~e~~~fc~~~GL~~~~d~~g~~~l 378 (409)
|. .+|++.++++||+ ++.++.+||+..|-++ |++|.+++
T Consensus 150 Y~--sI~~~~la~lLg~~s~~el~~fi~~~GW~v--d~~g~I~~ 189 (226)
T 1rz4_A 150 YQ--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSA--DESGQIFI 189 (226)
T ss_dssp CS--EECHHHHHHHTTSCCHHHHHHHHHHHTCEE--CC--CEEC
T ss_pred Hh--hCCHHHHHHHHcCCCHHHHHHHHHHCCCEE--CCCccEEe
Confidence 85 5899999999975 4567999999999987 45676644
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.01 E-value=0.26 Score=49.67 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhcCCCC-chhhhHHHHHhhCCchhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHh------ccchHHHHH
Q 015311 243 AEFRSFYVLLHLDSNGQ-PVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYCI 315 (409)
Q Consensus 243 ~EF~aY~iL~~l~~~~~-~l~~~L~~~l~~l~~~i~~s~~v~~Al~l~~a~~~gNy~rFFrLl~~------~~~~L~~cl 315 (409)
..+.-|.+|..|-.... .+...++ ... .....+|.+.....+..|+..+++..|+.++.. ..+++..+
T Consensus 220 ~~~lkYlvL~aLl~~~r~el~~~l~---~~~-~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h- 294 (394)
T 3txn_A 220 LTSLKYMLLCKIMLGQSDDVNQLVS---GKL-AITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAH- 294 (394)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHH---SHH-HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhc---ccc-ccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHH-
Confidence 45667777877765442 2222111 010 011268999988999999999999999998753 23444433
Q ss_pred HHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchhHHHH
Q 015311 316 IEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELF 360 (409)
Q Consensus 316 l~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e~~~f 360 (409)
+......||.++|..+.. .|. .++++.|++.|+.+..+++..
T Consensus 295 ~~~L~~~Ir~~~L~~i~~-pYs--rIsl~~iA~~l~ls~~evE~~ 336 (394)
T 3txn_A 295 LGTLYDTMLEQNLCRIIE-PYS--RVQVAHVAESIQLPMPQVEKK 336 (394)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCS--EEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH-hhc--eeeHHHHHHHHCcCHHHHHHH
Confidence 344567899999999987 575 599999999999986555443
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=91.17 E-value=0.64 Score=42.32 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=62.6
Q ss_pred HHHHHHHhCcHHHHHHHHHhccchHHHHHHHHhHHHHHHHHHHHHHhhcc---CCCCcCHHHHHHHHcCC------chhH
Q 015311 287 QALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY---KLHPYPLGHLSKVLMME------ESDV 357 (409)
Q Consensus 287 ~l~~a~~~gNy~rFFrLl~~~~~~L~~cll~~~~~~vR~~AL~~i~~a~y---k~~~~Pl~~L~~~L~fd------~~e~ 357 (409)
.+..|+..||...|=+.+.+...++..+=+...+.++|..+++.+.+..+ +.+.+|++.++..|.++ .+|+
T Consensus 85 ~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~ev 164 (203)
T 3t5x_A 85 EVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEV 164 (203)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHH
Confidence 67889999999999998865434444443334468889988888765322 23579999999999763 2333
Q ss_pred H---HHHHHhCCe-ecccCCCccccccCCCcc
Q 015311 358 E---LFCNAYGLQ-TCIDEVGNKLLPTKQTTF 385 (409)
Q Consensus 358 ~---~fc~~~GL~-~~~d~~g~~~l~~k~~~f 385 (409)
+ .-+-.-|.. -+-+.....++.-|+.+|
T Consensus 165 E~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pF 196 (203)
T 3t5x_A 165 QCILANLIYMGHVKGYISHQHQKLVVSKQNPF 196 (203)
T ss_dssp HHHHHHHHHHTSSCEEEETTTTEEEECSSCSS
T ss_pred HHHHHHHHHcCceEEEEcccccEEEECCCCCC
Confidence 3 334555653 222333334444566555
No 7
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.23 E-value=4.5 Score=40.26 Aligned_cols=120 Identities=16% Similarity=0.195 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHhh-cCCC-CchhhhHHHHHhhCC--chhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHh---ccchHHH
Q 015311 241 KEAEFRSFYVLLHL-DSNG-QPVGESLSLWFRHVP--SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA---EASYLQY 313 (409)
Q Consensus 241 ne~EF~aY~iL~~l-~~~~-~~l~~~L~~~l~~l~--~~i~~s~~v~~Al~l~~a~~~gNy~rFFrLl~~---~~~~L~~ 313 (409)
.+..-.+|.++..+ ..++ ..+++.|. .| ..+.++|....-+++..++..|++..|...++. ..|+|..
T Consensus 208 ~~~~~~a~~l~~~all~~~i~~f~eLL~-----~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~ 282 (393)
T 4b4t_O 208 AERQQLAYDLSISALLGDKIYNFGELLH-----HPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQ 282 (393)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCSTHHHHH-----SCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCChHHHhC-----ChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhh
Confidence 34445677776543 2322 23454332 22 123356666667789999999999999876532 3455543
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchhHHHH---HHHhCCe
Q 015311 314 CIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELF---CNAYGLQ 367 (409)
Q Consensus 314 cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e~~~f---c~~~GL~ 367 (409)
. ......++|..+|..++.+ .....+|.+.|++.|+.+..|++.+ +-.-|+.
T Consensus 283 ~-~~~l~~kirll~l~~l~~~-~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI 337 (393)
T 4b4t_O 283 H-ESFLRQKICLMTLIETVFV-KNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLL 337 (393)
T ss_dssp H-HHHHHHHHHHHHHHHHHCS-SSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCS
T ss_pred h-HHHHHHHHHHHHHHHHhcc-CCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCE
Confidence 3 2334578899998888642 2223699999999999986555444 4456764
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.84 E-value=0.96 Score=45.55 Aligned_cols=90 Identities=13% Similarity=0.211 Sum_probs=66.1
Q ss_pred CHhHHHHHHHHHHHHhCcHHHHHHHHHh-------ccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHc
Q 015311 279 SKEMWFARQALRYFQMGNYRRFLSTVAA-------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM 351 (409)
Q Consensus 279 s~~v~~Al~l~~a~~~gNy~rFFrLl~~-------~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~ 351 (409)
.|.+.-...+..++..++|..||..+.. ..+||..+ ...+...||.+++..+.+ .|+ .+.++.|++.||
T Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h-~~~l~~~ir~~~l~q~~~-~Ys--~I~l~~mA~~l~ 358 (429)
T 4b4t_R 283 TAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRH-ADFFVREMRRKVYAQLLE-SYK--TLSLKSMASAFG 358 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTT-HHHHHHHHHHHHHHHHHH-TCS--EEEHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHH-HHHHHHHHHHHHHHHHhH-Hhc--eeeHHHHHHHhC
Confidence 4667767788899999999999986532 23455554 345678999999999998 686 599999999999
Q ss_pred CCchh----HHHHHHHhCCeecccC
Q 015311 352 MEESD----VELFCNAYGLQTCIDE 372 (409)
Q Consensus 352 fd~~e----~~~fc~~~GL~~~~d~ 372 (409)
++..+ +..+...--|...-|.
T Consensus 359 ~s~~~~E~~L~~lI~~g~l~akID~ 383 (429)
T 4b4t_R 359 VSVAFLDNDLGKFIPNKQLNCVIDR 383 (429)
T ss_dssp SCHHHHHHHHHHHHHHTSSCEEEET
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 99654 4455555555544454
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=87.48 E-value=1.7 Score=44.57 Aligned_cols=117 Identities=9% Similarity=0.021 Sum_probs=75.3
Q ss_pred HHHHHHHHhCcHHHHHHHHHhcc-chHHHHHHHHhHHHHHHHHHHHHHhh-------ccCCCCcCHHHHHHHHcC-----
Q 015311 286 RQALRYFQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALCCIHNC-------CYKLHPYPLGHLSKVLMM----- 352 (409)
Q Consensus 286 l~l~~a~~~gNy~rFFrLl~~~~-~~L~~cll~~~~~~vR~~AL~~i~~a-------~yk~~~~Pl~~L~~~L~f----- 352 (409)
..+..|+..||...|=+.+.+.. .++..-++...+.++|..+++.+.+. .|+...+|++.++..|.+
T Consensus 300 ~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~ 379 (455)
T 3t5v_B 300 SVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPT 379 (455)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCcc
Confidence 46889999999999999886533 34444444667778888777666542 355578999999999985
Q ss_pred ----------------CchhHH---HHHHHhCCe-ecccCCCccccccCCCccCCCCCCccccchhhHhhhcc
Q 015311 353 ----------------EESDVE---LFCNAYGLQ-TCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGR 405 (409)
Q Consensus 353 ----------------d~~e~~---~fc~~~GL~-~~~d~~g~~~l~~k~~~f~~p~~~~~~~~~~~~~~~~~ 405 (409)
+.+|++ .=+..-|+. -+-+.....++.-|++ ++.+.||+.+-..-.+||.
T Consensus 380 ~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~---~~~~pFP~l~~~~~~~f~~ 449 (455)
T 3t5v_B 380 FEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTT---MIQEIVPPVNERITKMFPA 449 (455)
T ss_dssp TTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCS---CGGGTSCCHHHHHHHHSCC
T ss_pred ccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCC---CCCCCCCChHHHHHHHcCC
Confidence 223333 334555664 2224443444444553 2456788777766677764
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=76.40 E-value=7.1 Score=34.52 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHhccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCc-hhHHHH
Q 015311 282 MWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELF 360 (409)
Q Consensus 282 v~~Al~l~~a~~~gNy~rFFrLl~~~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~-~e~~~f 360 (409)
-..-+++...|..|+|..|-.. .+..|-|. .....+||..+|..|+.. ...+|.+.|++.|+.++ .|.+.+
T Consensus 59 ~~~~~~LL~iF~~G~~~~y~~~-~~~~p~L~----~~~~~KlrlLtL~sLa~~---~~~lsy~~I~~~l~i~~~~evE~l 130 (169)
T 3chm_A 59 DSVYLDLLRLFAHGTWGDYKCN-ATRLPHLS----PDQILKLKQLTVLTLAES---NKVLPYDTLMVELDVSNVRELEDF 130 (169)
T ss_dssp THHHHHHHHHHHHCCHHHHHHH-GGGSCCCC----HHHHHHHHHHHHHHHHHH---CSEEEHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHhcCCHHHHHHh-HHhCcchH----HHHHHHHHHHHHHHHHHh---CCCcCHHHHHHHhCCCCHHHHHHH
Confidence 3456788999999999998763 34556554 445678999999998763 34799999999999994 466665
Q ss_pred HH----HhCCee
Q 015311 361 CN----AYGLQT 368 (409)
Q Consensus 361 c~----~~GL~~ 368 (409)
+- ..||.-
T Consensus 131 vI~~ai~~gLI~ 142 (169)
T 3chm_A 131 LINECMYAGIVR 142 (169)
T ss_dssp HHHTHHHHTSEE
T ss_pred HHHHHHHhCCeE
Confidence 43 468753
No 11
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.50 E-value=65 Score=30.31 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=58.2
Q ss_pred cCHhHHHHHHHHHHHHhCcHHHHHHHHHh------ccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHc
Q 015311 278 KSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM 351 (409)
Q Consensus 278 ~s~~v~~Al~l~~a~~~gNy~rFFrLl~~------~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~ 351 (409)
..+.+..-..+..++..+++..|.+.+.. ..+++. -.+......+|..++..+.. .|. .+.+..|++.|+
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~~-~y~--~i~l~~la~~l~ 367 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTR-SHFNALYDTLLESNLCKIIE-PFE--CVEISHISKIIG 367 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHH-HHHHHHHHHHHHHHHHHHHS-SCS--CEEHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHHHHHHHHH-HHH--hcCHHHHHHHhC
Confidence 45666666678889999999998886642 122333 33455667788899999887 575 589999999999
Q ss_pred CCchhHHHHHH
Q 015311 352 MEESDVELFCN 362 (409)
Q Consensus 352 fd~~e~~~fc~ 362 (409)
.+..+++.++.
T Consensus 368 ~~~~~~E~~l~ 378 (434)
T 4b4t_Q 368 LDTQQVEGKLS 378 (434)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 98766655443
No 12
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.79 E-value=19 Score=37.46 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=46.1
Q ss_pred HHHHHHHhCcHHHHHHHHHhccchHHHH----HHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCc-hhHH
Q 015311 287 QALRYFQMGNYRRFLSTVAAEASYLQYC----IIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVE 358 (409)
Q Consensus 287 ~l~~a~~~gNy~rFFrLl~~~~~~L~~c----ll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~-~e~~ 358 (409)
.+..|+..||...|=..+........++ |+.+.-..+....|+.+.. .|. .+|+++++..|++++ +|++
T Consensus 347 ~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~-~Ys--rIsL~dIa~kL~L~s~eeaE 420 (523)
T 4b4t_S 347 HLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISL-TYK--KISLRDICLKLNLDSEQTVE 420 (523)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCC-CSS--EECHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHH-HHh--cccHHHHHHHhCCCCHHHHH
Confidence 5678999999999988775433333333 3344444455556666665 464 599999999999974 3443
No 13
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.34 E-value=96 Score=30.93 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHhCcHHHHHHHHHhccchHH-----------HHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHH
Q 015311 280 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQ-----------YCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSK 348 (409)
Q Consensus 280 ~~v~~Al~l~~a~~~gNy~rFFrLl~~~~~~L~-----------~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~ 348 (409)
+.+..--.+..+|..++..+|-..+..-.+.|. .--.......|+...|..+.+ .|. .+.++.|++
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k-~Ys--~I~l~~la~ 367 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISE-YYS--RITLLRLNE 367 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHH-HEE--EEEHHHHHH
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHH-Hhc--eeeHHHHHH
Confidence 334444457788888877666554422111110 112334556778888888887 676 599999999
Q ss_pred HHcCCchhHHHHHH
Q 015311 349 VLMMEESDVELFCN 362 (409)
Q Consensus 349 ~L~fd~~e~~~fc~ 362 (409)
+|+++..+++.++.
T Consensus 368 lL~l~~~evE~~ls 381 (445)
T 4b4t_P 368 LLDLTESQTETYIS 381 (445)
T ss_dssp HHTSCHHHHHHHHH
T ss_pred HhCcCHHHHHHHHH
Confidence 99999776665543
No 14
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=43.87 E-value=27 Score=27.01 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchhHHHHH
Q 015311 322 EVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFC 361 (409)
Q Consensus 322 ~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e~~~fc 361 (409)
.+...+|..+.+ .|. .+.++.|+++|+++..+++.++
T Consensus 15 ~v~E~nl~~is~-~Y~--~Isl~~La~ll~ls~~~vE~~l 51 (84)
T 1ufm_A 15 AVIEHNLLSASK-LYN--NITFEELGALLEIPAAKAEKIA 51 (84)
T ss_dssp HHHHHHHHHHHH-SCS--EEEHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcC--eeeHHHHHHHHCcCHHHHHHHH
Confidence 455666777877 676 5999999999999976554443
No 15
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=24.31 E-value=32 Score=28.11 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHcCCc-hhHHHHHHHhCCeeccc
Q 015311 349 VLMMEE-SDVELFCNAYGLQTCID 371 (409)
Q Consensus 349 ~L~fd~-~e~~~fc~~~GL~~~~d 371 (409)
.|.|++ ++++.||+.+|+.....
T Consensus 55 ~L~F~skE~AiayAek~G~~y~V~ 78 (106)
T 2jya_A 55 KLTFETQEQAEAYAQRKGIEYRVI 78 (106)
T ss_dssp EEEESSHHHHHHHHHHHTCEEEEC
T ss_pred eEecCCHHHHHHHHHHcCCEEEEe
Confidence 377887 46999999999997654
No 16
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=24.04 E-value=1.5e+02 Score=23.07 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchh--HHHHHHHhCCeec
Q 015311 319 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 369 (409)
Q Consensus 319 ~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e--~~~fc~~~GL~~~ 369 (409)
|+..+|...-..+... ...|+..|+..+||.+.. ...|-+.+|++-.
T Consensus 55 ~~~~~Rl~~A~~lL~~----~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 103 (113)
T 3oio_A 55 YYLELRLNRARQLLQQ----TSKSIVQIGLACGFSSGPHFSSTYRNHFNITPR 103 (113)
T ss_dssp HHHHHHHHHHHHHHHH----CCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHc----CCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 4555666544444331 257999999999999754 6788889998653
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=24.02 E-value=1.3e+02 Score=21.62 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchh---HHHHHHHhCCeecccCCC
Q 015311 322 EVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD---VELFCNAYGLQTCIDEVG 374 (409)
Q Consensus 322 ~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e---~~~fc~~~GL~~~~d~~g 374 (409)
.+|...|..+... ..++++..|++.|+.+... ...-++..|+... ...|
T Consensus 10 ~~~~~IL~~L~~~---~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~-~~~G 61 (67)
T 2heo_A 10 NLEQKILQVLSDD---GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS-PSPK 61 (67)
T ss_dssp HHHHHHHHHHHHH---CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-EETT
T ss_pred HHHHHHHHHHHHc---CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec-CCCc
Confidence 3577788888642 2368999999999999643 5677888899433 4344
No 18
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.81 E-value=1.7e+02 Score=22.53 Aligned_cols=46 Identities=11% Similarity=-0.071 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchh--HHHHHHHhCCee
Q 015311 319 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 368 (409)
Q Consensus 319 ~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e--~~~fc~~~GL~~ 368 (409)
|+..+|...-..+... ...|+..++..+||.+.. ...|-+.+|++.
T Consensus 53 ~~~~~Rl~~A~~lL~~----~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 100 (108)
T 3oou_A 53 YLNRYRVNYAKEELLQ----TKDNLTIIAGKSGYTDMAYFYRQFKKHTGETP 100 (108)
T ss_dssp HHHHHHHHHHHHHHHH----CCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHc----CCCCHHHHHHHcCCCChHHHHHHHHHHhCcCH
Confidence 3455665544433321 257999999999998754 678888889764
No 19
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=22.59 E-value=1.7e+02 Score=22.43 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchh--HHHHHHHhCCee
Q 015311 319 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 368 (409)
Q Consensus 319 ~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e--~~~fc~~~GL~~ 368 (409)
|+..+|...-..+... ...|+..++..+||.+.. ...|-+.+|++.
T Consensus 52 ~~~~~Rl~~A~~lL~~----~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 99 (107)
T 2k9s_A 52 WREDQRISQAKLLLST----TRMPIATVGRNVGFDDQLYFSRVFKKCTGASP 99 (107)
T ss_dssp HHHHHHHHHHHHHHHH----CCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHc----CCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCH
Confidence 4555665444333321 258999999999999754 678888899864
No 20
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=22.11 E-value=2e+02 Score=22.58 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchh--HHHHHHHhCCeec
Q 015311 319 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 369 (409)
Q Consensus 319 ~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e--~~~fc~~~GL~~~ 369 (409)
|+..+|......+.. ....|+..|+..+||.+.. ...|=+.+|++..
T Consensus 54 ~~~~~Rl~~A~~lL~----~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 102 (120)
T 3mkl_A 54 LLTECRMQRALQLIV----IHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 102 (120)
T ss_dssp HHHHHHHHHHHHHHT----STTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHH----cCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 456666664444432 2358999999999999754 6778888898653
No 21
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=21.85 E-value=48 Score=27.15 Aligned_cols=23 Identities=9% Similarity=-0.008 Sum_probs=18.7
Q ss_pred HHcCCc-hhHHHHHHHhCCeeccc
Q 015311 349 VLMMEE-SDVELFCNAYGLQTCID 371 (409)
Q Consensus 349 ~L~fd~-~e~~~fc~~~GL~~~~d 371 (409)
.|.|++ ++++.||+.+|+.....
T Consensus 63 ~L~F~skE~AiayAek~G~~y~V~ 86 (108)
T 2lju_A 63 CLSFTTRELAIAYAVAHKIDYTVL 86 (108)
T ss_dssp CEEESSHHHHHHHHHHTTCEEEEE
T ss_pred eEecCCHHHHHHHHHHcCCEEEEe
Confidence 478887 46999999999987554
No 22
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.43 E-value=2e+02 Score=21.79 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchh--HHHHHHHhCCee
Q 015311 319 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 368 (409)
Q Consensus 319 ~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e--~~~fc~~~GL~~ 368 (409)
|+..+|......+... ...|+..++..+||.+.. ...|-+.+|++.
T Consensus 51 ~~~~~Rl~~A~~lL~~----~~~si~~iA~~~Gf~~~s~F~r~Fk~~~G~tP 98 (103)
T 3lsg_A 51 YLLQKRMEKAKLLLLT----TELKNYEIAEQVGFEDVNYFITKFKKYYQITP 98 (103)
T ss_dssp HHHHHHHHHHHHHHHH----CCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHC----CCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCH
Confidence 4555666544433331 258999999999998754 577888888764
No 23
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.10 E-value=2.6e+02 Score=21.27 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchh--HHHHHHHhCCee
Q 015311 319 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 368 (409)
Q Consensus 319 ~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e--~~~fc~~~GL~~ 368 (409)
|+..+|...-..+.... ...+|+..++..+||.+.. ...|=+.+|++-
T Consensus 50 ~~~~~Rl~~A~~lL~~~--~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 99 (108)
T 3mn2_A 50 FAKRVRLQHAHNLLSDG--ATPTTVTAAALSCGFSNLGHFARDYRDMFGEKP 99 (108)
T ss_dssp HHHHHHHHHHHHHHHSS--SSCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHcC--CCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCh
Confidence 45556655444443311 1137999999999999754 678888889864
Done!