Query 015313
Match_columns 409
No_of_seqs 136 out of 2155
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 10:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 2.6E-59 8.9E-64 460.8 31.1 374 1-409 22-413 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 1E-59 3.5E-64 459.9 26.1 369 4-409 3-378 (503)
3 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.4E-59 1.5E-63 459.3 29.8 372 1-409 25-409 (539)
4 3g7s_A Long-chain-fatty-acid-- 100.0 5E-59 1.7E-63 460.1 29.6 374 1-409 19-418 (549)
5 3r44_A Fatty acyl COA syntheta 100.0 5.2E-59 1.8E-63 456.5 27.7 371 1-409 16-392 (517)
6 3rix_A Luciferase, luciferin 4 100.0 1.4E-58 4.9E-63 456.9 29.7 373 1-409 20-418 (550)
7 3o83_A Peptide arylation enzym 100.0 1.3E-58 4.5E-63 456.4 28.4 374 1-409 30-418 (544)
8 3t5a_A Long-chain-fatty-acid-- 100.0 1.8E-58 6.3E-63 449.4 26.9 363 1-405 24-445 (480)
9 3etc_A AMP-binding protein; ad 100.0 4.9E-58 1.7E-62 454.8 29.8 371 2-409 56-454 (580)
10 1v25_A Long-chain-fatty-acid-C 100.0 1E-57 3.5E-62 449.8 31.9 371 1-409 18-414 (541)
11 2d1s_A Luciferase, luciferin 4 100.0 9E-58 3.1E-62 450.6 31.4 371 2-409 26-420 (548)
12 3ivr_A Putative long-chain-fat 100.0 3.5E-57 1.2E-61 443.2 32.6 365 1-409 6-377 (509)
13 3fce_A D-alanine--poly(phospho 100.0 2.2E-58 7.4E-63 452.1 22.9 364 1-409 1-379 (512)
14 1t5h_X 4-chlorobenzoyl COA lig 100.0 5.4E-57 1.8E-61 441.2 30.9 367 1-409 2-381 (504)
15 2v7b_A Benzoate-coenzyme A lig 100.0 4.4E-57 1.5E-61 444.5 29.0 371 3-409 26-408 (529)
16 3e7w_A D-alanine--poly(phospho 100.0 4E-57 1.4E-61 442.8 26.8 357 1-405 1-369 (511)
17 3c5e_A Acyl-coenzyme A synthet 100.0 2.5E-56 8.6E-61 441.9 30.2 369 3-409 40-435 (570)
18 1amu_A GRSA, gramicidin synthe 100.0 9.6E-57 3.3E-61 444.2 27.0 351 2-405 40-397 (563)
19 1pg4_A Acetyl-COA synthetase; 100.0 4.2E-56 1.4E-60 446.7 31.2 374 3-409 78-496 (652)
20 3nyq_A Malonyl-COA ligase; A/B 100.0 1.1E-56 3.7E-61 438.6 24.5 355 1-409 22-384 (505)
21 4gr5_A Non-ribosomal peptide s 100.0 4.1E-56 1.4E-60 441.0 28.6 351 2-405 76-434 (570)
22 3rg2_A Enterobactin synthase c 100.0 6.1E-56 2.1E-60 443.6 29.9 374 1-409 27-413 (617)
23 3tsy_A Fusion protein 4-coumar 100.0 6.1E-56 2.1E-60 465.4 31.1 374 1-409 61-460 (979)
24 4dg8_A PA1221; ANL superfamily 100.0 3.4E-56 1.2E-60 444.0 27.0 349 2-405 28-385 (620)
25 3l8c_A D-alanine--poly(phospho 100.0 2.8E-56 9.4E-61 438.2 22.5 362 1-409 4-382 (521)
26 1ry2_A Acetyl-coenzyme A synth 100.0 1.3E-55 4.5E-60 443.4 27.5 374 3-409 84-505 (663)
27 3ipl_A 2-succinylbenzoate--COA 100.0 1E-55 3.5E-60 432.1 25.1 362 1-409 1-377 (501)
28 3kxw_A Saframycin MX1 syntheta 100.0 1.6E-55 5.6E-60 439.3 25.8 366 1-406 11-425 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 2.1E-54 7.3E-59 430.2 30.0 368 2-409 22-441 (576)
30 3ite_A SIDN siderophore synthe 100.0 9.6E-54 3.3E-58 423.8 21.5 362 1-409 20-406 (562)
31 2vsq_A Surfactin synthetase su 100.0 3.7E-52 1.3E-56 447.2 25.9 355 2-405 465-828 (1304)
32 3hgu_A EHPF; phenazine, antibi 100.0 5.5E-31 1.9E-35 247.0 15.7 218 167-409 88-346 (369)
33 4gs5_A Acyl-COA synthetase (AM 100.0 7.8E-31 2.7E-35 244.2 13.8 199 169-399 36-234 (358)
34 3qov_A Phenylacetate-coenzyme 100.0 1.7E-29 5.9E-34 242.1 17.4 200 170-388 86-291 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 5.1E-28 1.7E-32 232.0 18.9 202 167-388 87-296 (437)
36 2y4o_A Phenylacetate-coenzyme 100.0 6.2E-28 2.1E-32 231.8 18.2 202 167-388 89-298 (443)
37 4eql_A 4-substituted benzoates 94.4 0.69 2.4E-05 44.8 13.7 31 167-197 90-121 (581)
38 4epl_A Jasmonic acid-amido syn 93.4 0.31 1E-05 47.2 9.2 31 167-197 95-126 (581)
39 2y27_A Phenylacetate-coenzyme 92.2 1.2 4.2E-05 41.5 11.6 90 25-132 108-199 (437)
40 4b2g_A GH3-1 auxin conjugating 92.1 0.61 2.1E-05 45.3 9.3 31 167-197 96-127 (609)
41 2y4o_A Phenylacetate-coenzyme 92.0 1.3 4.6E-05 41.3 11.6 90 25-132 110-201 (443)
42 3qov_A Phenylacetate-coenzyme 91.7 1.4 4.8E-05 41.1 11.4 90 25-132 104-195 (436)
43 3ipl_A 2-succinylbenzoate--COA 87.5 6.2 0.00021 37.4 12.4 98 14-132 161-268 (501)
44 1mdb_A 2,3-dihydroxybenzoate-A 82.8 10 0.00035 36.3 11.5 97 15-132 181-289 (539)
45 2d1s_A Luciferase, luciferin 4 82.4 9.7 0.00033 36.6 11.2 97 16-131 192-299 (548)
46 3o83_A Peptide arylation enzym 81.8 12 0.00041 35.9 11.6 98 14-132 189-298 (544)
47 4gs5_A Acyl-COA synthetase (AM 81.5 4.9 0.00017 36.3 8.3 96 13-131 34-139 (358)
48 3hgu_A EHPF; phenazine, antibi 80.7 6.8 0.00023 35.4 9.0 86 25-129 109-219 (369)
49 3r44_A Fatty acyl COA syntheta 78.4 17 0.00057 34.5 11.3 95 15-131 169-274 (517)
50 3rg2_A Enterobactin synthase c 76.0 29 0.00098 33.8 12.5 97 15-132 183-291 (617)
51 3g7s_A Long-chain-fatty-acid-- 75.8 26 0.00088 33.5 11.9 105 168-285 32-140 (549)
52 3fce_A D-alanine--poly(phospho 74.6 9.5 0.00032 36.2 8.4 96 14-129 142-249 (512)
53 3kxw_A Saframycin MX1 syntheta 74.5 10 0.00034 36.7 8.7 98 14-131 165-276 (590)
54 3rix_A Luciferase, luciferin 4 74.1 19 0.00064 34.5 10.4 89 25-131 208-297 (550)
55 3ivr_A Putative long-chain-fat 74.0 26 0.00088 33.1 11.3 85 25-131 178-264 (509)
56 3e7w_A D-alanine--poly(phospho 72.9 9.8 0.00034 36.1 8.0 86 25-130 161-249 (511)
57 1t5h_X 4-chlorobenzoyl COA lig 72.4 14 0.00046 35.0 8.9 98 14-132 151-261 (504)
58 3ni2_A 4-coumarate:COA ligase; 71.6 22 0.00074 33.9 10.2 99 168-285 35-137 (536)
59 1v25_A Long-chain-fatty-acid-C 71.4 19 0.00065 34.4 9.7 70 63-132 214-284 (541)
60 3t5a_A Long-chain-fatty-acid-- 66.4 39 0.0013 31.4 10.6 105 168-285 37-148 (480)
61 4fuq_A Malonyl COA synthetase; 63.1 27 0.00091 33.0 8.8 81 189-281 28-112 (503)
62 3nyq_A Malonyl-COA ligase; A/B 60.6 41 0.0014 31.7 9.6 96 14-131 153-259 (505)
63 1amu_A GRSA, gramicidin synthe 60.4 52 0.0018 31.5 10.4 82 188-281 63-148 (563)
64 3gqw_A Fatty acid AMP ligase; 59.6 32 0.0011 33.0 8.8 97 15-130 175-285 (576)
65 2v7b_A Benzoate-coenzyme A lig 59.3 37 0.0013 32.2 9.1 85 188-284 47-135 (529)
66 3tsy_A Fusion protein 4-coumar 58.2 36 0.0012 35.3 9.3 101 14-131 223-334 (979)
67 3tbh_A O-acetyl serine sulfhyd 58.0 80 0.0027 27.9 10.5 60 65-124 68-127 (334)
68 3etc_A AMP-binding protein; ad 57.8 50 0.0017 31.8 9.8 95 168-278 69-167 (580)
69 3c5e_A Acyl-coenzyme A synthet 56.2 44 0.0015 32.1 9.1 101 168-284 56-161 (570)
70 1pg4_A Acetyl-COA synthetase; 54.6 38 0.0013 33.2 8.5 70 63-132 293-367 (652)
71 4dg8_A PA1221; ANL superfamily 54.2 37 0.0013 33.1 8.3 69 63-131 199-269 (620)
72 3l8c_A D-alanine--poly(phospho 53.2 57 0.002 30.7 9.3 99 14-130 143-253 (521)
73 4gr5_A Non-ribosomal peptide s 50.5 73 0.0025 30.5 9.6 90 168-278 88-181 (570)
74 3vc3_A Beta-cyanoalnine syntha 49.2 87 0.003 27.8 9.2 60 65-124 83-142 (344)
75 4eez_A Alcohol dehydrogenase 1 44.6 1.6E+02 0.0055 25.8 10.7 67 63-132 159-227 (348)
76 1ry2_A Acetyl-coenzyme A synth 44.0 1.1E+02 0.0037 30.0 9.9 97 167-278 94-195 (663)
77 3dzz_A Putative pyridoxal 5'-p 43.5 1E+02 0.0036 27.2 9.1 133 65-203 106-261 (391)
78 2ayi_A Aminopeptidase T; metal 40.4 53 0.0018 30.1 6.4 52 32-98 4-57 (408)
79 1zsy_A Mitochondrial 2-enoyl t 38.9 1.1E+02 0.0036 27.2 8.2 59 63-122 163-223 (357)
80 4aec_A Cysteine synthase, mito 35.9 2.6E+02 0.0089 25.7 11.3 59 65-123 171-229 (430)
81 3ite_A SIDN siderophore synthe 34.5 2E+02 0.007 27.2 10.0 83 168-254 33-121 (562)
82 1zjc_A Aminopeptidase AMPS; me 34.3 61 0.0021 29.8 5.8 52 32-98 7-60 (418)
83 3ezx_A MMCP 1, monomethylamine 33.7 1.9E+02 0.0066 23.5 11.5 89 212-321 93-193 (215)
84 3tqh_A Quinone oxidoreductase; 32.5 1.5E+02 0.005 25.8 7.9 55 63-122 148-203 (321)
85 1eg5_A Aminotransferase; PLP-d 31.6 98 0.0034 27.3 6.8 56 66-122 87-146 (384)
86 3sr3_A Microcin immunity prote 31.4 1.7E+02 0.0059 25.8 8.1 61 63-123 8-87 (336)
87 3uko_A Alcohol dehydrogenase c 31.4 2E+02 0.0069 25.6 8.9 57 63-123 189-246 (378)
88 3uog_A Alcohol dehydrogenase; 30.3 2.1E+02 0.0072 25.3 8.7 55 63-121 185-239 (363)
89 3ip1_A Alcohol dehydrogenase, 30.0 2.1E+02 0.0073 25.7 8.9 56 63-122 209-265 (404)
90 3gaz_A Alcohol dehydrogenase s 29.9 2.1E+02 0.0072 25.1 8.6 53 63-119 146-198 (343)
91 4h1h_A LMO1638 protein; MCCF-l 29.7 1.8E+02 0.006 25.6 7.9 60 64-123 8-86 (327)
92 3ju7_A Putative PLP-dependent 29.4 1.1E+02 0.0038 27.4 6.7 57 63-122 73-136 (377)
93 3goh_A Alcohol dehydrogenase, 28.7 1.4E+02 0.0048 25.8 7.1 53 63-120 138-190 (315)
94 1z7w_A Cysteine synthase; tran 28.2 2.9E+02 0.01 23.9 10.4 60 65-124 63-122 (322)
95 3l6b_A Serine racemase; pyrido 27.3 1.7E+02 0.006 25.8 7.5 55 72-126 79-133 (346)
96 3gms_A Putative NADPH:quinone 27.2 2.8E+02 0.0096 24.1 8.9 56 63-122 140-196 (340)
97 3b8x_A WBDK, pyridoxamine 5-ph 27.0 3.3E+02 0.011 24.0 10.0 70 64-137 76-155 (390)
98 4b7c_A Probable oxidoreductase 27.0 1.8E+02 0.0063 25.3 7.7 57 63-121 145-201 (336)
99 3qwb_A Probable quinone oxidor 26.7 3.1E+02 0.011 23.7 11.0 56 63-122 144-200 (334)
100 2jwk_A Protein TOLR; periplasm 26.5 85 0.0029 20.2 4.1 36 3-38 32-67 (74)
101 3i16_A Aluminum resistance pro 26.1 1.7E+02 0.0059 26.8 7.4 59 65-123 112-184 (427)
102 2q3b_A Cysteine synthase A; py 25.9 3.2E+02 0.011 23.5 10.6 57 66-124 65-122 (313)
103 2egu_A Cysteine synthase; O-ac 25.9 2.9E+02 0.0098 23.8 8.6 57 66-124 63-120 (308)
104 3tla_A MCCF; serine protease, 25.7 2.2E+02 0.0075 25.6 7.8 60 64-123 39-117 (371)
105 3fpc_A NADP-dependent alcohol 25.6 1.9E+02 0.0066 25.4 7.5 56 63-122 162-218 (352)
106 3ri6_A O-acetylhomoserine sulf 25.1 1.7E+02 0.0059 26.8 7.3 56 65-122 118-174 (430)
107 4h27_A L-serine dehydratase/L- 25.1 1.5E+02 0.0052 26.4 6.7 56 70-125 94-149 (364)
108 4dq6_A Putative pyridoxal phos 25.0 2.4E+02 0.0081 24.8 8.2 52 65-121 111-170 (391)
109 3a2b_A Serine palmitoyltransfe 24.8 1.8E+02 0.0063 25.8 7.4 55 65-123 124-181 (398)
110 4eb5_A Probable cysteine desul 24.3 1.1E+02 0.0038 26.9 5.8 56 66-122 86-145 (382)
111 2vsq_A Surfactin synthetase su 24.2 1.7E+02 0.0059 31.4 8.0 64 189-254 489-555 (1304)
112 3kax_A Aminotransferase, class 24.0 3.1E+02 0.011 23.9 8.8 53 65-121 103-162 (383)
113 1c7n_A Cystalysin; transferase 24.0 3E+02 0.01 24.3 8.7 54 65-121 110-170 (399)
114 3two_A Mannitol dehydrogenase; 23.9 2.4E+02 0.0083 24.6 7.9 54 63-120 172-225 (348)
115 2pqm_A Cysteine synthase; OASS 23.9 3.7E+02 0.013 23.6 9.7 57 66-124 76-133 (343)
116 3n75_A LDC, lysine decarboxyla 23.2 1.8E+02 0.0063 28.8 7.3 58 63-123 230-306 (715)
117 3s2e_A Zinc-containing alcohol 23.2 2.3E+02 0.0078 24.7 7.5 57 63-123 162-218 (340)
118 1mdo_A ARNB aminotransferase; 23.0 2.1E+02 0.0072 25.3 7.4 57 63-123 74-135 (393)
119 1gu7_A Enoyl-[acyl-carrier-pro 23.0 1.9E+02 0.0064 25.6 7.0 59 63-122 162-223 (364)
120 1vj0_A Alcohol dehydrogenase, 23.0 3.9E+02 0.013 23.7 9.2 56 63-122 190-247 (380)
121 4hvk_A Probable cysteine desul 23.0 1.4E+02 0.0047 26.2 6.1 56 66-122 86-145 (382)
122 4e5s_A MCCFLIKE protein (BA_56 22.6 2.4E+02 0.0082 24.8 7.4 60 64-123 8-86 (331)
123 2e7j_A SEP-tRNA:Cys-tRNA synth 22.6 2.4E+02 0.0081 24.6 7.6 55 65-122 90-154 (371)
124 3jv7_A ADH-A; dehydrogenase, n 22.5 3.4E+02 0.011 23.6 8.5 57 64-123 168-224 (345)
125 4dup_A Quinone oxidoreductase; 22.4 3.9E+02 0.013 23.3 9.1 55 63-121 163-218 (353)
126 3ss7_X D-serine dehydratase; t 22.1 2.6E+02 0.0089 25.7 7.8 59 70-129 161-220 (442)
127 3hvy_A Cystathionine beta-lyas 21.9 2.2E+02 0.0074 26.1 7.2 60 64-123 112-184 (427)
128 1h2b_A Alcohol dehydrogenase; 20.5 1.9E+02 0.0064 25.6 6.4 57 64-123 183-239 (359)
129 1o69_A Aminotransferase; struc 20.4 2.7E+02 0.0092 24.7 7.6 72 63-137 67-149 (394)
130 1p0f_A NADP-dependent alcohol 20.3 4.4E+02 0.015 23.2 9.8 57 63-123 187-244 (373)
131 4d9i_A Diaminopropionate ammon 20.0 3.4E+02 0.012 24.4 8.1 57 71-127 114-170 (398)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.6e-59 Score=460.78 Aligned_cols=374 Identities=22% Similarity=0.290 Sum_probs=315.0
Q ss_pred ChHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~ 78 (409)
+++.+.|.++++++||++|+++. ++++||+||.++++++|+.|.+. |+++||+|+|+++|+
T Consensus 22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~ 84 (536)
T 3ni2_A 22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKI-----------------GIQQGDVIMLFLPSS 84 (536)
T ss_dssp CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSS
T ss_pred CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCc
Confidence 57899999999999999999985 68999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCC-CCccccc
Q 015313 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFD 157 (409)
Q Consensus 79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 157 (409)
++++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.............+....... .......
T Consensus 85 ~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (536)
T 3ni2_A 85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ 164 (536)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHT
T ss_pred HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhh
Confidence 999999999999999999999999999999999999999999999887777666544444433332211100 0000000
Q ss_pred -cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHH
Q 015313 158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA 232 (409)
Q Consensus 158 -~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~g~~~~~~~ 232 (409)
...........++++++|+|||||||.||+|.++|+++.+.+..... .+.+.++|++++.+|++|..++...++.
T Consensus 165 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (536)
T 3ni2_A 165 ADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC 244 (536)
T ss_dssp SCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHH
T ss_pred ccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHH
Confidence 01111223456789999999999999999999999999988776543 3467889999999999999999777889
Q ss_pred HHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (409)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG 312 (409)
++..|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....++++||.+++||
T Consensus 245 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~gG 306 (536)
T 3ni2_A 245 GLRVGAPILIMPKFEIGSLLGL----------IEKYKVSIAPVVPPVMMSIAKSPD--------LDKHDLSSLRMIKSGG 306 (536)
T ss_dssp HHHHTCCEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTCSC--------GGGSCCTTCCEEEEES
T ss_pred HHhcCCEEEEcCCCCHHHHHHH----------HHHhCCeEEEccHHHHHHHHhCcc--------cccCCCccceEEEECC
Confidence 9999999999999999999988 778999999999999999987632 2345788999999999
Q ss_pred CCCCHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCCCccccccccCCeEEEEee-CCCCCCCCc-cceEE
Q 015313 313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEIC 384 (409)
Q Consensus 313 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~-----~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~Gel~ 384 (409)
+++++++.+++++.+ ++++++.||+||++++++.. .......+++|+|+++++++|+| +++++++.| .|||+
T Consensus 307 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~ 386 (536)
T 3ni2_A 307 APLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEIC 386 (536)
T ss_dssp SCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEE
T ss_pred CCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEE
Confidence 999999999999999 89999999999998654422 22345678899999999999999 557888888 89999
Q ss_pred EeCcchhhhhcCCCcccchhh--cccC
Q 015313 385 VKSPSLFKEYWKLPKESRTLS--SCLY 409 (409)
Q Consensus 385 v~g~~~~~gY~~~~~~t~~~~--~g~~ 409 (409)
++||+++.||||+|+.|++.+ +|||
T Consensus 387 v~g~~v~~GY~~~p~~t~~~~~~~g~~ 413 (536)
T 3ni2_A 387 IRGDQIMKGYLNDPEATSRTIDKEGWL 413 (536)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred EeCcccchhhcCChhHHHhhccCCCce
Confidence 999999999999999999984 7897
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1e-59 Score=459.93 Aligned_cols=369 Identities=31% Similarity=0.517 Sum_probs=308.3
Q ss_pred HHHHHHhcccCCCeeEEE---eCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 4 FKAAYKKGSMARDSVAIR---ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 4 ~~~l~~~~~~~~~~~a~~---~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
.+.|.+.++++||++|+. ++++++||+||.++++++|+.|.++ |+++||+|+|+++|+++
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~ 65 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVAR-----------------GLQVGDRVAAQTEKSVE 65 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence 457888999999999888 4678999999999999999999995 99999999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.............+.................
T Consensus 66 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (503)
T 4fuq_A 66 ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASE 145 (503)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCS
T ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCC
Confidence 99999999999999999999999999999999999999999987665544443333332222211110000000000001
Q ss_pred hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (409)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i 240 (409)
........++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|++|..+++..++.+++.|+++
T Consensus 146 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~ 225 (503)
T 4fuq_A 146 AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSM 225 (503)
T ss_dssp CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEE
T ss_pred CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence 11122346789999999999999999999999999999999999999999999999999999999766677889999999
Q ss_pred EEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHH
Q 015313 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320 (409)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~ 320 (409)
++.+.+++..+++. ++ ++|+++++|+++..+++... .....++++|.+++||+++++++.
T Consensus 226 ~~~~~~~~~~~~~~----------i~--~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~l~~~~~ 285 (503)
T 4fuq_A 226 IFLPKFDPDKILDL----------MA--RATVLMGVPTFYTRLLQSPR--------LTKETTGHMRLFISGSAPLLADTH 285 (503)
T ss_dssp EECSSCCHHHHHHH----------HT--TCCEEEECHHHHHHHHTCTT--------CSTTTTTTCCEEEECSSCCCHHHH
T ss_pred EEcCCCCHHHHHHH----------Hh--hcCEEEEHHHHHHHHHhCCC--------ccccchhhcEEEEECCCCCCHHHH
Confidence 99999999999988 44 79999999999999987632 233467899999999999999999
Q ss_pred HHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEee-CCCCCCCCc-cceEEEeCcchhhhhcCCC
Q 015313 321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLP 398 (409)
Q Consensus 321 ~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~Gel~v~g~~~~~gY~~~~ 398 (409)
++|.+.+++++++.||+||+++.+..........+++|+|+++++++|+| +++++++.| .|||+++||+++.||||+|
T Consensus 286 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~ 365 (503)
T 4fuq_A 286 REWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMP 365 (503)
T ss_dssp HHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCH
T ss_pred HHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCCh
Confidence 99999999999999999999977665555566788999999999999999 778889888 8999999999999999999
Q ss_pred cccchhh--cccC
Q 015313 399 KESRTLS--SCLY 409 (409)
Q Consensus 399 ~~t~~~~--~g~~ 409 (409)
+.|++.| ||||
T Consensus 366 ~~t~~~f~~~g~~ 378 (503)
T 4fuq_A 366 EKTKSEFRDDGFF 378 (503)
T ss_dssp HHHHHTBCTTSCE
T ss_pred hhhHhhhCCCCCe
Confidence 9999984 8997
No 3
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.4e-59 Score=459.31 Aligned_cols=372 Identities=18% Similarity=0.235 Sum_probs=308.3
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
+++.+.|.++++++||++|+++.++++||+||.++++++|+.|++ +|+++||+|+|+++|+++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 87 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKE 87 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHH
Confidence 368899999999999999999999999999999999999999999 499999999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH-----HHHHHHHhhccC-CceeccCCCCCCCCCcc
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSG-AKFSLIPPVPNVSSETT 154 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (409)
++++++||+++|++++|+++.++.+++.++++.++++++|++++. ...+..+..... ...+...... .....
T Consensus 88 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 165 (539)
T 1mdb_A 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--EEFLP 165 (539)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC--TTSEE
T ss_pred HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc--cchhh
Confidence 999999999999999999999999999999999999999998753 122333322221 1111111100 00111
Q ss_pred cccc-chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHHH
Q 015313 155 VFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA 232 (409)
Q Consensus 155 ~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~ 232 (409)
.... ..........++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+++.. .++.
T Consensus 166 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (539)
T 1mdb_A 166 LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLG 245 (539)
T ss_dssp GGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred hhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHH
Confidence 1000 0001123346789999999999999999999999999999988888888999999999999999999864 6889
Q ss_pred HHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (409)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG 312 (409)
++..|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....++++||.+++||
T Consensus 246 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~~~~gG 307 (539)
T 1mdb_A 246 VLYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAAS--------SRRDDLSSLQVLQVGG 307 (539)
T ss_dssp HHHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHHH--------HCCCCCTTCCEEEEES
T ss_pred HHHhCCEEEECCCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCcc--------ccCCCccceeEEEEcC
Confidence 9999999999999999999988 778999999999999999987632 2345689999999999
Q ss_pred CCCCHHHHHHHHHHhCCccccccccccccccccccCCC-CCCccccccccCC-eEEEEeeCCCCCCCCc-cceEEEeCcc
Q 015313 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPG-VQVKIAEDESGSDAAG-VGEICVKSPS 389 (409)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-~~~~~~~G~p~~~-~~~~ivd~~~~~~~~~-~Gel~v~g~~ 389 (409)
+++++++.+++.+.+|+++++.||+||++..+...... ....+++|+|+++ .+++|+|+++++++.| .|||+|+||+
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~ 387 (539)
T 1mdb_A 308 AKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPY 387 (539)
T ss_dssp SCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTT
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcc
Confidence 99999999999999999999999999976444332211 2345789999975 5899999999999988 8999999999
Q ss_pred hhhhhcCCCcccchhh--cccC
Q 015313 390 LFKEYWKLPKESRTLS--SCLY 409 (409)
Q Consensus 390 ~~~gY~~~~~~t~~~~--~g~~ 409 (409)
+++||||+|++|++.| ||||
T Consensus 388 v~~GY~~~~~~t~~~f~~~g~~ 409 (539)
T 1mdb_A 388 TIRGYYKAEEHNAASFTEDGFY 409 (539)
T ss_dssp SCSSCTTCHHHHHHHBCTTSCE
T ss_pred cchhhcCChhhhhhhccCCCCe
Confidence 9999999999999985 8997
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5e-59 Score=460.10 Aligned_cols=374 Identities=22% Similarity=0.324 Sum_probs=314.5
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCC--------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~--------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~ 72 (409)
+++.+.|.++++++||++|+++.+ +++||+||.++++++|+.|.+. |+++||+|+
T Consensus 19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~ 81 (549)
T 3g7s_A 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-----------------GVRKGEHVG 81 (549)
T ss_dssp CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEE
T ss_pred CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEE
Confidence 578899999999999999999876 8999999999999999999994 999999999
Q ss_pred EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCC
Q 015313 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE 152 (409)
Q Consensus 73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (409)
|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+................. .....
T Consensus 82 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (549)
T 3g7s_A 82 VCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL 160 (549)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH
T ss_pred EECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH
Confidence 99999999999999999999999999999999999999999999999999998888777665554332222111 11100
Q ss_pred cccccc-chhhhccCCC-CCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 015313 153 TTVFDQ-SQAEKMDGQR-GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (409)
Q Consensus 153 ~~~~~~-~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~ 230 (409)
...... .......... ++++++|+|||||||.||+|.++|+++...+......+++.+.|++++.+|++|..++.. +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~ 239 (549)
T 3g7s_A 161 SEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-V 239 (549)
T ss_dssp HHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-H
T ss_pred HHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-H
Confidence 000000 0000111222 389999999999999999999999999999999888899999999999999999999865 7
Q ss_pred HHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (409)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~ 310 (409)
+.++..|+++++.+.+++..+++. ++++++|+++++|+++..+++...... ...+++++|.+++
T Consensus 240 ~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~~~~ 303 (549)
T 3g7s_A 240 NLMVTVGNEYVVMGMFNQEMLAEN----------IEKYKGTFSWAVPPALNVLVNTLESSN------KTYDWSYLKVFAT 303 (549)
T ss_dssp TTHHHHCCEEEEESSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHHSC------CCCCCTTCCEEEE
T ss_pred HHHHhcCceEEEcCCCCHHHHHHH----------HHHhCCeEEEeCCHHHHHHHhhhhhhc------ccCCccceeEEEe
Confidence 888999999999999999999998 788999999999999999988633211 1246789999999
Q ss_pred eCCCCCHHHHHHHHHH----hC---CccccccccccccccccccC-CCCCCccccccccCCeEEEEee-CCCCCCCCc-c
Q 015313 311 GSSALPLPVMQQWETI----TG---HRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-V 380 (409)
Q Consensus 311 gG~~~~~~~~~~~~~~----~~---~~v~~~YG~tE~g~~~~~~~-~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~ 380 (409)
||+++++++.+++.+. ++ +++++.||+||++++++... ......+++|+|+++++++|+| +++++++.| .
T Consensus 304 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 304 GAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp ESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 9999999999999887 66 89999999999987665433 2335678899999999999999 778888888 8
Q ss_pred ceEEEeCcchhhhhcCCCcccchhh----cc--cC
Q 015313 381 GEICVKSPSLFKEYWKLPKESRTLS----SC--LY 409 (409)
Q Consensus 381 Gel~v~g~~~~~gY~~~~~~t~~~~----~g--~~ 409 (409)
|||+|+||+++.||||+|++|++.+ || ||
T Consensus 384 GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~ 418 (549)
T 3g7s_A 384 GEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418 (549)
T ss_dssp EEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEE
T ss_pred eEEEEECcchhhhhCCChhhhhhhhhccCCCCceE
Confidence 9999999999999999999999885 56 87
No 5
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.2e-59 Score=456.46 Aligned_cols=371 Identities=23% Similarity=0.341 Sum_probs=309.4
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCc--cccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQK--SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~--~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~ 78 (409)
+|+.+.|.++++++||++|+++.++ ++||+||.++++++|+.|.+. |+++||+|+|+++|+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~ 78 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTAL-----------------GIAKGDRVALLMPNS 78 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSS
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCcCEEEEEcCCC
Confidence 4788999999999999999999776 999999999999999999995 999999999999999
Q ss_pred HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccc-cc
Q 015313 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV-FD 157 (409)
Q Consensus 79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 157 (409)
++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+..........+.. ......... ..
T Consensus 79 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 157 (517)
T 3r44_A 79 VEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW-IGADSLAERLRS 157 (517)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEE-EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEc-cCcccHHHHhhc
Confidence 9999999999999999999999999999999999999999999998887776654432211000000 000000000 00
Q ss_pred cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcC
Q 015313 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (409)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G 237 (409)
...........++++++|+|||||||.||+|.++|+++.+.+......++++.+|++++.+|++|..++...++ +++.|
T Consensus 158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~-~~~~G 236 (517)
T 3r44_A 158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIF-SAMRG 236 (517)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHH-HHHHT
T ss_pred cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHH-HHhcC
Confidence 00011122346789999999999999999999999999999999999999999999999999999999865444 45599
Q ss_pred CEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (409)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~ 317 (409)
+++++.+.+++..+++. ++++++|++.++|+++..+.+.. .....++++||.+++||+++++
T Consensus 237 ~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~lr~i~~gGe~l~~ 298 (517)
T 3r44_A 237 VTLISMPQFDATKVWSL----------IVEERVCIGGAVPAILNFMRQVP--------EFAELDAPDFRYFITGGAPMPE 298 (517)
T ss_dssp CEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHSH--------HHHHCCCTTCCEEEECSSCCCH
T ss_pred eEEEEeCCCCHHHHHHH----------HHHhCCeEEEeHHHHHHHHHhCc--------ccccCCCCcccEEEECCCCCCH
Confidence 99999999999999998 77799999999999999998752 3345678899999999999999
Q ss_pred HHHHHHHHHhCCccccccccccccccccc--cCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhc
Q 015313 318 PVMQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYW 395 (409)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~tE~g~~~~~--~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~ 395 (409)
++.+.+.+. ++++++.||+||+++.++. ........+++|+|.++++++|+|++++.++.|.|||+++||+++.|||
T Consensus 299 ~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~ 377 (517)
T 3r44_A 299 ALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYW 377 (517)
T ss_dssp HHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEET
T ss_pred HHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhC
Confidence 999999887 9999999999999865442 2223456789999999999999999999888889999999999999999
Q ss_pred CCCcccchh-hcccC
Q 015313 396 KLPKESRTL-SSCLY 409 (409)
Q Consensus 396 ~~~~~t~~~-~~g~~ 409 (409)
|+|++|++. .+|||
T Consensus 378 ~~p~~t~~~f~~g~~ 392 (517)
T 3r44_A 378 NRPEATRDAFDNGWF 392 (517)
T ss_dssp TCHHHHHHTEETTEE
T ss_pred CChhhhHhhhcCCCE
Confidence 999999998 68887
No 6
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.4e-58 Score=456.92 Aligned_cols=373 Identities=21% Similarity=0.265 Sum_probs=307.2
Q ss_pred ChHHHHHHHhcccCCCeeEEE---e--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313 1 MEVFKAAYKKGSMARDSVAIR---A--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~---~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~ 75 (409)
+|+.+.|.++++++||++|++ + .++++||+||.++++++|+.|++ +|+++||+|+|++
T Consensus 20 ~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~ 82 (550)
T 3rix_A 20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCS 82 (550)
T ss_dssp SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEc
Confidence 478899999999999999976 3 46799999999999999999999 4999999999999
Q ss_pred CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc--eeccCCCCCCCCCc
Q 015313 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVSSET 153 (409)
Q Consensus 76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 153 (409)
+|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......... .+.+..........
T Consensus 83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (550)
T 3rix_A 83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 162 (550)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence 9999999999999999999999999999999999999999999999998888777665544321 12222111111000
Q ss_pred cccccc-----------hhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh---cccCCCCeEEEecC
Q 015313 154 TVFDQS-----------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLP 219 (409)
Q Consensus 154 ~~~~~~-----------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p 219 (409)
...+.. .........++++++|+|||||||.||+|.++|+++...+...... .++.++|++++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence 000000 0001111235789999999999999999999999999888776654 46778999999999
Q ss_pred chhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhh
Q 015313 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (409)
Q Consensus 220 l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~ 299 (409)
++|..+++ .++.++..|+++++.+.+++..+++. ++++++|+++++|+++..+++... ...
T Consensus 243 ~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~ 303 (550)
T 3rix_A 243 FHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDK 303 (550)
T ss_dssp TTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEEECHHHHHHHHHCCG--------GGG
T ss_pred HHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcc--------ccc
Confidence 99999986 47888999999999999999999998 788999999999999999987632 234
Q ss_pred hhhccceEEEeeCCCCCHHHHHHHHHHhCCc-cccccccccccccccccCCCCCCccccccccCCeEEEEeeC-CCCCCC
Q 015313 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDA 377 (409)
Q Consensus 300 ~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~-v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~-~~~~~~ 377 (409)
.++++||.+++||+++++++.+++.+.++.. +++.||+||+++.++..+......+++|+|+|+++++|+|+ ++++++
T Consensus 304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~ 383 (550)
T 3rix_A 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLG 383 (550)
T ss_dssp SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCC
T ss_pred cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCC
Confidence 5688999999999999999999999999875 88999999999877666555667889999999999999994 578888
Q ss_pred Cc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313 378 AG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY 409 (409)
Q Consensus 378 ~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~ 409 (409)
.| .|||+|+||+++.||||+|++|++.+ ||||
T Consensus 384 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~ 418 (550)
T 3rix_A 384 VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWL 418 (550)
T ss_dssp TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred CCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCe
Confidence 88 89999999999999999999999984 8997
No 7
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.3e-58 Score=456.36 Aligned_cols=374 Identities=16% Similarity=0.231 Sum_probs=308.5
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
+++.+.|.++++++||++|+++.++++||+||.++++++|+.|++. |+++||+|+|+++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~ 92 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEK-----------------GLGKGDTALVQLPNVAE 92 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHC-----------------CCCCCCEEEEECCCCHH
Confidence 4678999999999999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhccC-Ccee-ccCCCCCCCCCc
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFS-LIPPVPNVSSET 153 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~-~~~~~~~~~~~~ 153 (409)
++++++||+++|++++|+++.++.+++.+++++++++++|++.+.. .....+..... .... ............
T Consensus 93 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (544)
T 3o83_A 93 FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL 172 (544)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHH
T ss_pred HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchh
Confidence 9999999999999999999999999999999999999999987543 22222222211 1111 111110000000
Q ss_pred ccccc--chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HH
Q 015313 154 TVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-AL 230 (409)
Q Consensus 154 ~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~ 230 (409)
..... ..........++++++|+|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++.. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence 00000 0001113346789999999999999999999999999999999999999999999999999999998854 57
Q ss_pred HHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (409)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~ 310 (409)
+.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++.... ...++++||.+++
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~i~~ 314 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSI----------IQRHQVNMASLVPSAVIMWLEKAAQ--------YKDQIQSLKLLQV 314 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHTT--------THHHHTTCCEEEE
T ss_pred HHHHHcCCEEEECCCCCHHHHHHH----------HHHHCCCEEEechHHHHHHHhchhh--------ccccCCcceEEEE
Confidence 889999999999999999999988 7889999999999999999886332 3346889999999
Q ss_pred eCCCCCHHHHHHHHHHhCCccccccccccccccccccCC-CCCCcccccccc-CCeEEEEeeCCCCCCCCc-cceEEEeC
Q 015313 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKS 387 (409)
Q Consensus 311 gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~-~~~~~~~~G~p~-~~~~~~ivd~~~~~~~~~-~Gel~v~g 387 (409)
||+++++++.+++.+.+++++++.||+||+++.+..... ......++|+|+ ++++++|+|+++++++.| +|||+++|
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g 394 (544)
T 3o83_A 315 GGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRG 394 (544)
T ss_dssp ESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEec
Confidence 999999999999999999999999999998865543322 123456899996 899999999999999988 89999999
Q ss_pred cchhhhhcCCCcccchhh--cccC
Q 015313 388 PSLFKEYWKLPKESRTLS--SCLY 409 (409)
Q Consensus 388 ~~~~~gY~~~~~~t~~~~--~g~~ 409 (409)
|+++.||||+|+.|++.+ ||||
T Consensus 395 ~~v~~GY~~~~~~t~~~f~~~g~~ 418 (544)
T 3o83_A 395 PYTFCGYYQSPEHNSQVFDEDNYY 418 (544)
T ss_dssp TTSCSCCTTCHHHHHHHBCTTCCE
T ss_pred CCcchhhcCChhhhhhhCCCCCCe
Confidence 999999999999999995 7897
No 8
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.8e-58 Score=449.45 Aligned_cols=363 Identities=20% Similarity=0.276 Sum_probs=294.9
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCC---------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~---------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V 71 (409)
+++.+.|.++++++||++|+++.+ +++||+||.++++++|+.|++. |+ +||+|
T Consensus 24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~-~gd~V 85 (480)
T 3t5a_A 24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC-----------------GS-TGDRV 85 (480)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS-----------------SC-TTCEE
T ss_pred ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc-----------------CC-CCCEE
Confidence 578999999999999999999855 7999999999999999999995 85 99999
Q ss_pred EEEeCCCHHHHHHHHHHHhhCcEEEeCCC---CCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC----ceeccC
Q 015313 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP 144 (409)
Q Consensus 72 ~l~~~~~~~~~~~~~A~~~~G~~~~~i~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (409)
+|+++|+++++++++||+++|++++|+++ .++.+++.++++.++++++|++.+....+......... ....+.
T Consensus 86 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (480)
T 3t5a_A 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD 165 (480)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGG
T ss_pred EEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEec
Confidence 99999999999999999999999999998 78899999999999999999999887766654332211 111111
Q ss_pred CCCCCCCCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCC------CCeEEEec
Q 015313 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS------ADQFLHCL 218 (409)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~------~d~~l~~~ 218 (409)
.... ............++++++|+|||||||.||+|.++|+++...+......+.... +|++++.+
T Consensus 166 ~~~~--------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 237 (480)
T 3t5a_A 166 LLDL--------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL 237 (480)
T ss_dssp GSCT--------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECC
T ss_pred cccc--------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeC
Confidence 1000 001111233456789999999999999999999999999999988888777777 89999999
Q ss_pred CchhHHHHHHHHHHHHhcCCEEEEccCc----chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHH
Q 015313 219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294 (409)
Q Consensus 219 pl~~~~g~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~ 294 (409)
|++|..+++..++.+++.|+++++.+.. ++..+++. ++++++| +..+|+++..++.......
T Consensus 238 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t-~~~~p~~~~~l~~~~~~~~--- 303 (480)
T 3t5a_A 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL----------MASDFHA-FSAAPNFAFELAARRTTDD--- 303 (480)
T ss_dssp CTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH----------TTSSSEE-EEEECHHHHHHHHHHCCTG---
T ss_pred CCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH----------HHhhcee-EeeChHHHHHHHHhhcCcc---
Confidence 9999999877789999999999999764 78888888 8999999 8899999888876422111
Q ss_pred HHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC------CccccccccccccccccccCCC------------------
Q 015313 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRG------------------ 350 (409)
Q Consensus 295 ~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~tE~g~~~~~~~~~------------------ 350 (409)
.....++++||.+++||+++++++.++|.+.++ +.+++.||+||+++.++.....
T Consensus 304 -~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 382 (480)
T 3t5a_A 304 -DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA 382 (480)
T ss_dssp -GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBC
T ss_pred -cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCce
Confidence 234467899999999999999999999999884 3799999999998766543221
Q ss_pred -------CCCccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCcchhhhhcCCCcccchhh
Q 015313 351 -------ARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLS 405 (409)
Q Consensus 351 -------~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~ 405 (409)
.....++|+|++ ++++|+|++ +++++.| +|||+|+||++++||||+|++|++.|
T Consensus 383 ~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f 445 (480)
T 3t5a_A 383 KPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTF 445 (480)
T ss_dssp CCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHH
T ss_pred eecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHH
Confidence 134568999999 999999987 6888888 89999999999999999999999987
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.9e-58 Score=454.80 Aligned_cols=371 Identities=19% Similarity=0.286 Sum_probs=309.5
Q ss_pred hHH-HHHHHhcccCCCeeEEEe-----CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEe
Q 015313 2 EVF-KAAYKKGSMARDSVAIRA-----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (409)
Q Consensus 2 ~~~-~~l~~~~~~~~~~~a~~~-----~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~ 75 (409)
|+. +.|.++++++||++|+++ ..+++||+||.++++++|+.|++. |+++||+|+|++
T Consensus 56 n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~-----------------Gv~~Gd~V~l~~ 118 (580)
T 3etc_A 56 NFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKH-----------------GIGKGDYVMLTL 118 (580)
T ss_dssp CHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEEC
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEc
Confidence 444 889999999999999997 246899999999999999999994 999999999999
Q ss_pred CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH--HHHHHHhhccC---CceeccCCCCCCC
Q 015313 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--EVLQNVASKSG---AKFSLIPPVPNVS 150 (409)
Q Consensus 76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~ 150 (409)
+|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+........ ...+.+... ...
T Consensus 119 ~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (580)
T 3etc_A 119 KSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLE 197 (580)
T ss_dssp TTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCT
T ss_pred CCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-ccc
Confidence 999999999999999999999999999999999999999999999987643 45544433332 122222111 011
Q ss_pred CCccccccchh--------hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchh
Q 015313 151 SETTVFDQSQA--------EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222 (409)
Q Consensus 151 ~~~~~~~~~~~--------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~ 222 (409)
......+.... .......++|+++|+|||||||.||+|.++|.+++..+.......++.++++++...|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGW 277 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTS
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHH
Confidence 11111000000 0012356789999999999999999999999999888877767778889999999999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEc--cCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhh
Q 015313 223 VHGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300 (409)
Q Consensus 223 ~~g~~~~~~~~l~~G~~i~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~ 300 (409)
..+++..++.++..|+++++. ..+++..+++. ++++++|+++++|++++.+.+. .....
T Consensus 278 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~---------~~~~~ 338 (580)
T 3etc_A 278 GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK----------ASKYGVTTFCAPPTIYRFLIKE---------DLSHY 338 (580)
T ss_dssp THHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTS---------CC---
T ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH----------HHHHCCeEEEccHHHHHHHHhc---------ccccC
Confidence 988877788899999999988 56889999988 7789999999999999999874 12345
Q ss_pred hhccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-
Q 015313 301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG- 379 (409)
Q Consensus 301 ~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~- 379 (409)
++++||.+++||+++++++.++|.+.+|+++++.||+||+++.++..+....+.+++|+|+|+++++|+|++|++++.|
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~ 418 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGE 418 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCC
Confidence 6889999999999999999999999999999999999999877766665567788999999999999999999999988
Q ss_pred cceEEEeC-----cchhhhhcCCCcccchh-hcccC
Q 015313 380 VGEICVKS-----PSLFKEYWKLPKESRTL-SSCLY 409 (409)
Q Consensus 380 ~Gel~v~g-----~~~~~gY~~~~~~t~~~-~~g~~ 409 (409)
.|||+++| ++++.|||++|++|++. .||||
T Consensus 419 ~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy 454 (580)
T 3etc_A 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYY 454 (580)
T ss_dssp CEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEE
T ss_pred ceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEE
Confidence 89999997 78999999999999999 78997
No 10
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1e-57 Score=449.77 Aligned_cols=371 Identities=18% Similarity=0.277 Sum_probs=304.2
Q ss_pred ChHHHHHHHhcccCCCeeEEEe----CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313 1 MEVFKAAYKKGSMARDSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~ 76 (409)
+++.+.|.++++++||++|+++ .++++||+||.++++++|+.|++. |+++||+|+++++
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~ 80 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-----------------GVGVGDRVATLGF 80 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence 4688999999999999999994 567999999999999999999994 9999999999999
Q ss_pred CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC-c-eeccCCCCCCCCCcc
Q 015313 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-K-FSLIPPVPNVSSETT 154 (409)
Q Consensus 77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 154 (409)
|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+......... . .+.+..... .....
T Consensus 81 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (541)
T 1v25_A 81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP-EGYLA 159 (541)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC-TTCEE
T ss_pred CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC-ccccc
Confidence 99999999999999999999999999999999999999999999999887777665544321 1 112111110 00000
Q ss_pred ccccch-hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHH--HhhcccCCCCeEEEecCchhHHHHHHHHH
Q 015313 155 VFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPLHHVHGLFNALL 231 (409)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~~~~g~~~~~~ 231 (409)
..+... ........++++++|+|||||||.||+|.++|+++....... ...++++++|++++.+|++|..++. .++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~ 238 (541)
T 1v25_A 160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPY 238 (541)
T ss_dssp HHHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHH
T ss_pred HHHHhhccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHH
Confidence 000000 001123456899999999999999999999999998776653 3456788999999999999999985 477
Q ss_pred HHHhcCCEEEEccC-cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEe
Q 015313 232 APLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (409)
Q Consensus 232 ~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~ 310 (409)
.+++.|+++++.+. +++..+++. ++++++|+++++|+++..+++... ....++++||.+++
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~ 300 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYLE--------STGHRLKTLRRLVV 300 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHH--------HHTCCCSSCCEEEE
T ss_pred HHHhcCceEEeeCCCCCHHHHHHH----------HHhcCeeEEecchHHHHHHHhhhh--------ccCCcchhccEEEE
Confidence 88999999999874 689999888 778999999999999999987632 22346789999999
Q ss_pred eCCCCCHHHHHHHHHHhCCccccccccccccccccccCCC-----------CCCccccccccCCeEEEEeeCCCCCCCC-
Q 015313 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVKIAEDESGSDAA- 378 (409)
Q Consensus 311 gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-----------~~~~~~~G~p~~~~~~~ivd~~~~~~~~- 378 (409)
||+++++++.+++ +.+++++++.||+||++.+++..... ....+++|+|+|+++++|+|+++++++.
T Consensus 301 gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~ 379 (541)
T 1v25_A 301 GGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD 379 (541)
T ss_dssp CSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred CCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCC
Confidence 9999999999999 66799999999999998765533211 0235689999999999999999998873
Q ss_pred -c-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313 379 -G-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY 409 (409)
Q Consensus 379 -~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~ 409 (409)
+ .|||+++||+++.||||+|++|++.+ ||||
T Consensus 380 ~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~ 414 (541)
T 1v25_A 380 GKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF 414 (541)
T ss_dssp SCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCE
T ss_pred CCcceEEEEeCcchhccccCChhhhhhhccCCCCe
Confidence 3 79999999999999999999999985 8997
No 11
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=9e-58 Score=450.62 Aligned_cols=371 Identities=22% Similarity=0.290 Sum_probs=307.6
Q ss_pred hHHH-HHHHhcccCCCeeEEEe--CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313 2 EVFK-AAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (409)
Q Consensus 2 ~~~~-~l~~~~~~~~~~~a~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~ 78 (409)
++.+ .|.++++++ |++|+++ .++++||+||.++++++|+.|++ +|+++||+|+|+++|+
T Consensus 26 ~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~ 87 (548)
T 2d1s_A 26 GTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-----------------YGLVVDGRIALCSENC 87 (548)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECSSC
T ss_pred cHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCc
Confidence 6777 788888889 9999998 57899999999999999999999 4999999999999999
Q ss_pred HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC--CceeccCCCCC---CCCCc
Q 015313 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN---VSSET 153 (409)
Q Consensus 79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~ 153 (409)
++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+........ ...+.+..... .....
T Consensus 88 ~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (548)
T 2d1s_A 88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD 167 (548)
T ss_dssp TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHH
T ss_pred hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999987776665543332 12222221100 00000
Q ss_pred cccccc-hh-hhccCC------CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh---cccCCCCeEEEecCchh
Q 015313 154 TVFDQS-QA-EKMDGQ------RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHH 222 (409)
Q Consensus 154 ~~~~~~-~~-~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~ 222 (409)
...... .. ...... .++++++|+|||||||.||+|.++|+++...+...... ++++++|++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 000000 00 001111 23899999999999999999999999999988887766 67888999999999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhh
Q 015313 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (409)
Q Consensus 223 ~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 302 (409)
..++...++.++ .|+++++.+.+++..+++. ++++++|+++++|+++..+.+... ....++
T Consensus 248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l 308 (548)
T 2d1s_A 248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT----------LQDYKCTSVILVPTLFAILNKSEL--------LNKYDL 308 (548)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH----------HHHTTEEEEEECHHHHHHHHHCSC--------GGGSCC
T ss_pred HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhCcc--------cccccc
Confidence 999876567777 9999999999999999998 778999999999999999987522 123467
Q ss_pred ccceEEEeeCCCCCHHHHHHHHHHh-CCccccccccccccccccccCCCCCCccccccccCCeEEEEee-CCCCCCCCc-
Q 015313 303 KQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG- 379 (409)
Q Consensus 303 ~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~- 379 (409)
++||.+++||+++++++.+++.+.+ ++++++.||+||+++.++.........+++|+|+|+++++|+| +++++++.|
T Consensus 309 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 388 (548)
T 2d1s_A 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNR 388 (548)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTC
T ss_pred cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCC
Confidence 8999999999999999999999999 6889999999999876655444446678999999999999999 678888888
Q ss_pred cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313 380 VGEICVKSPSLFKEYWKLPKESRTLS--SCLY 409 (409)
Q Consensus 380 ~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~ 409 (409)
.|||+++||+++.||||+|++|++.+ ||||
T Consensus 389 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~ 420 (548)
T 2d1s_A 389 RGEVCVKGPMLMKGYVNNPEATKELIDEEGWL 420 (548)
T ss_dssp CEEEEEESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred CeEEEECCHHHhhhhcCChHHhhhcccCCcEE
Confidence 89999999999999999999999985 7997
No 12
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.5e-57 Score=443.18 Aligned_cols=365 Identities=20% Similarity=0.294 Sum_probs=303.8
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
+|+.+.|.++++++||++|++++++++||+||.++++++|+.|.+. |+++||+|+++++|+++
T Consensus 6 ~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~ 68 (509)
T 3ivr_A 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRD-----------------GVHTGDRVAILSQNCSE 68 (509)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred CCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHH
Confidence 5789999999999999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC-ce-eccCCCCCCCCCccccc-
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KF-SLIPPVPNVSSETTVFD- 157 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~- 157 (409)
++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+......... .. ..+.. ..........
T Consensus 69 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 146 (509)
T 3ivr_A 69 MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD--GSGPFAPFKDL 146 (509)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC--CCSSCEEGGGT
T ss_pred HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC--CCcChhhHhhc
Confidence 9999999999999999999999999999999999999999999887765444333321 11 11111 1111111111
Q ss_pred -cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhc
Q 015313 158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236 (409)
Q Consensus 158 -~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~ 236 (409)
...........++++++|+|||||||.||+|.++|+++...+.+....++++++|++++.+|++|..++.. .+.+++.
T Consensus 147 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~ 225 (509)
T 3ivr_A 147 ASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQA 225 (509)
T ss_dssp CCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHH
T ss_pred cCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHh
Confidence 11111223456789999999999999999999999999999999999999999999999999999999865 5555556
Q ss_pred CCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCC
Q 015313 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP 316 (409)
Q Consensus 237 G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~ 316 (409)
|++.++...+++..+++. ++++++|+++++|+++..+++.. ...+++++|.++.+|++
T Consensus 226 ~g~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~----------~~~~l~~lr~~~~~g~~-- 283 (509)
T 3ivr_A 226 GGASVIAAKFDPAQAARD----------IEAHKVTVMAEFAPMLGNILDQA----------APAQLASLRAVTGLDTP-- 283 (509)
T ss_dssp TCEEEECSSCCHHHHHHH----------HHHHTCCEEEEETTHHHHHHHHC----------CGGGGTTCCEEEEECCH--
T ss_pred CCcEEEecccCHHHHHHH----------HHHHCCcEEEecHHHHHHHHhcc----------cccchhhhheecccCCh--
Confidence 666666668899999998 77899999999999999998752 34567899999999987
Q ss_pred HHHHHHHHHHh-CCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhh
Q 015313 317 LPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY 394 (409)
Q Consensus 317 ~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY 394 (409)
++.+++.+.+ ++++++.||+||++++++..... ....++|+|+++++++|+|+++++++.| .|||+++||+++.||
T Consensus 284 -~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY 361 (509)
T 3ivr_A 284 -ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGY 361 (509)
T ss_dssp -HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEE
T ss_pred -HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccc
Confidence 8888999988 89999999999998765533221 2334599999999999999999999988 899999999999999
Q ss_pred cCCCcccchh-hcccC
Q 015313 395 WKLPKESRTL-SSCLY 409 (409)
Q Consensus 395 ~~~~~~t~~~-~~g~~ 409 (409)
|++|+.|++. .||||
T Consensus 362 ~~~~~~t~~~f~~g~~ 377 (509)
T 3ivr_A 362 WNNAAATQHAFRNGWH 377 (509)
T ss_dssp TTCHHHHHHHTGGGSE
T ss_pred cCCHHHhHHHhhcCCc
Confidence 9999999998 68997
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.2e-58 Score=452.07 Aligned_cols=364 Identities=18% Similarity=0.252 Sum_probs=301.6
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
||+.+.|+++++++||++|+++.++++||+||.++++++|++|.+. |+++||+|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~~~gd~V~i~~~n~~e 63 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSE-----------------YPDDRSPIMVYGHMQPE 63 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHH-----------------STTCCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEeCCCHH
Confidence 8999999999999999999999999999999999999999999994 89999999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
++++++||+++|++++|+++.++.+++.++++.+++++++++..... ............ ............
T Consensus 64 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~ 134 (512)
T 3fce_A 64 MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLPVRIVSEDN---LKDIFFTHKGNT 134 (512)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCSSEEEETHH---HHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccccceechhh---hhhhcccccccC
Confidence 99999999999999999999999999999999999999999753210 000000000000 000000000000
Q ss_pred hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEE
Q 015313 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (409)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i 240 (409)
........++++++|+|||||||.||+|.++|+++.+.+.+....+++.++|++++.+|++|..+++ .++.++..|+++
T Consensus 135 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 213 (512)
T 3fce_A 135 PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL 213 (512)
T ss_dssp CCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred CCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence 1112335678999999999999999999999999999999998899999999999999999999985 588999999999
Q ss_pred EEccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCH
Q 015313 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (409)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~ 317 (409)
++.+. +++..+++. ++++++|++.++|+++..++.... ....+++++|.+++||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~~G~~l~~ 275 (512)
T 3fce_A 214 WAIDKDMIARPKDLFAS----------LEQSDIQVWTSTPSFAEMCLMEAS--------FSESMLPNMKTFLFCGEVLPN 275 (512)
T ss_dssp EECCHHHHHSHHHHHHH----------HHHHCCCEEEECHHHHHHHTTSTT--------CSTTTSTTCCEEEECSSCCCH
T ss_pred EECCHHHhhCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhcc--------ccchhCccccEEEEecCcCCH
Confidence 99986 678888888 777999999999999998876532 234568899999999999999
Q ss_pred HHHHHHHHHh-CCccccccccccccccccccCCC-----CCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcch
Q 015313 318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLRG-----ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL 390 (409)
Q Consensus 318 ~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~~-----~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~ 390 (409)
++.+++.+.+ ++++++.||+||+++.++..... .....++|+|.++++++|+|++|++++.| .|||+++||++
T Consensus 276 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v 355 (512)
T 3fce_A 276 EVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSV 355 (512)
T ss_dssp HHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTS
T ss_pred HHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEecccc
Confidence 9999999999 88999999999998765532211 23566899999999999999999999888 89999999999
Q ss_pred hhhhcCCCcccchhh-----cccC
Q 015313 391 FKEYWKLPKESRTLS-----SCLY 409 (409)
Q Consensus 391 ~~gY~~~~~~t~~~~-----~g~~ 409 (409)
+.|||++|++|++.+ +|||
T Consensus 356 ~~GY~~~~~~t~~~f~~~~~~~~~ 379 (512)
T 3fce_A 356 SVGYLGSPELTEKAFTMIDGERAY 379 (512)
T ss_dssp CSCBTTCHHHHHHHEEEETTEEEE
T ss_pred ChhhcCCchhhhhccccCCCCEEE
Confidence 999999999999986 6687
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=5.4e-57 Score=441.17 Aligned_cols=367 Identities=21% Similarity=0.270 Sum_probs=301.8
Q ss_pred ChHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~ 78 (409)
||+.+.|.++++++||++|+++. ++++||+||.++++++|+.|++. |+++||+|+|+++|+
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------Gv~~gd~V~i~~~~~ 64 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-----------------GLRPQQRVAVVAPNS 64 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSC
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCC
Confidence 57899999999999999999987 88999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEe--chhHHHHH-HHHhhccCCceeccCCCCCCCCCccc
Q 015313 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVL-QNVASKSGAKFSLIPPVPNVSSETTV 155 (409)
Q Consensus 79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (409)
++++++++||+++|++++|+++.++.+++.+++++++++++|+ +.+..+.+ ... . ....+.+..... ....
T Consensus 65 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~---~~~~ 138 (504)
T 1t5h_X 65 ADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG-S--GARIIFLGDLVR---DGEP 138 (504)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC-C--CCEEEEGGGTEE---TTEE
T ss_pred HHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc-c--cceeEEecchhh---cCcc
Confidence 9999999999999999999999999999999999999999999 77655544 221 1 111111110000 0000
Q ss_pred cccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhccc--CCCCeEEEecCchhHHHHHHHHHHH
Q 015313 156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNALLAP 233 (409)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~g~~~~~~~~ 233 (409)
.............++++++|+|||||||.||+|.++|+++.+.+......+++ .++|++++.+|++|..++...++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp CCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred cccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence 00000001123467899999999999999999999999999998888877777 7889999999999999986668899
Q ss_pred HhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCC
Q 015313 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (409)
Q Consensus 234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~ 313 (409)
+..|+++++.+.+++..+++. ++++++|+++++|+++..+++.... .....++++||.+++||+
T Consensus 219 l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~l~~lr~~~~gG~ 282 (504)
T 1t5h_X 219 LALDGTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAH------AGSSLKLDSLRHVTFAGA 282 (504)
T ss_dssp HHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHCC------TTCCCCCTTCCEEEECCT
T ss_pred HHcCceEEeCCCCCHHHHHHH----------HHHhCCeEEEeChHHHHHHHhhhcc------ccccccCccccEEEEcCC
Confidence 999999999999999999988 7789999999999999999875311 012346789999999999
Q ss_pred CCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCC---CCCCCc-cceEEEe-Cc
Q 015313 314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES---GSDAAG-VGEICVK-SP 388 (409)
Q Consensus 314 ~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~---~~~~~~-~Gel~v~-g~ 388 (409)
++++++.+++.+.+++++++.||+||++...... ....+++|.|.++++++|+|+++ ++++.| .|||+++ ||
T Consensus 283 ~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~ 359 (504)
T 1t5h_X 283 TMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359 (504)
T ss_dssp TCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCT
T ss_pred cCCHHHHHHHHHhcCcceeeeecccccccccccc---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCc
Confidence 9999999999999999999999999994333222 24567899999999999999888 788888 8999999 99
Q ss_pred chhhhhcCCCcccchh-hcccC
Q 015313 389 SLFKEYWKLPKESRTL-SSCLY 409 (409)
Q Consensus 389 ~~~~gY~~~~~~t~~~-~~g~~ 409 (409)
+++.||||+|+.|++. .||||
T Consensus 360 ~~~~GY~~~~~~t~~~f~~g~~ 381 (504)
T 1t5h_X 360 SAFVGYLNQPQATAEKLQDGWY 381 (504)
T ss_dssp TSCCCBTTCHHHHHHHEETTEE
T ss_pred eeeceecCCchhhhhhhcCCcc
Confidence 9999999999999998 68997
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.4e-57 Score=444.53 Aligned_cols=371 Identities=23% Similarity=0.340 Sum_probs=299.1
Q ss_pred HHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHH
Q 015313 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82 (409)
Q Consensus 3 ~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~ 82 (409)
+.+.|.++++ +||++|+++.++++||+||.++++++|+.|++. |+++||+|+++++|+++++
T Consensus 26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~~~ 87 (529)
T 2v7b_A 26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTL-----------------GVHPEERILLVMLDTVALP 87 (529)
T ss_dssp HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSTHHH
T ss_pred HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCcHHHH
Confidence 6778888888 999999999889999999999999999999994 9999999999999999999
Q ss_pred HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC---CceeccCCCCCCC----CCccc
Q 015313 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPNVS----SETTV 155 (409)
Q Consensus 83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~ 155 (409)
++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+........ ............. .....
T Consensus 88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (529)
T 2v7b_A 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL 167 (529)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHH
T ss_pred HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhh
Confidence 9999999999999999999999999999999999999999987766655433211 1111111110000 00000
Q ss_pred cc-cchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHH-HHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 015313 156 FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (409)
Q Consensus 156 ~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~ 233 (409)
.. ...........++++++++|||||||.||+|.++|+++ ..........+++.++|++++.+|++|..++...++.+
T Consensus 168 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 247 (529)
T 2v7b_A 168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247 (529)
T ss_dssp HHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred hccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence 00 00011122346789999999999999999999999999 56555555567788999999999999999987767889
Q ss_pred HhcCCEEEEc-cCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313 234 LYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (409)
Q Consensus 234 l~~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG 312 (409)
+..|+++++. +.+++..+++. ++++++|+++++|+++..+++.... ......++|.+++||
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG 309 (529)
T 2v7b_A 248 LSVGATAILMAERPTADAIFAR----------LVEHRPTVFYGVPTLYANMLVSPNL--------PARADVAIRICTSAG 309 (529)
T ss_dssp HHHTCEEECCCSCCCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTCTTC--------CCGGGCCCCEEEECS
T ss_pred HhcCcEEEEecCCCCHHHHHHH----------HHHhCCEEEEecHHHHHHHHhCccc--------ccccCCceEEEEEcC
Confidence 9999999988 56789998888 7779999999999999999875221 111124899999999
Q ss_pred CCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchh
Q 015313 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLF 391 (409)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~ 391 (409)
+++++++.+++.+.+++++++.||+||++.+...........+++|+|+++++++|+|++|++++.| .|||+++||+++
T Consensus 310 e~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~ 389 (529)
T 2v7b_A 310 EALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAA 389 (529)
T ss_dssp SCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCC
T ss_pred CCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcc
Confidence 9999999999999999999999999999765544333345678999999999999999999999988 899999999999
Q ss_pred hhhcCCCcccchh-hcccC
Q 015313 392 KEYWKLPKESRTL-SSCLY 409 (409)
Q Consensus 392 ~gY~~~~~~t~~~-~~g~~ 409 (409)
.|||++|+.|++. .+|||
T Consensus 390 ~gY~~~~~~t~~~f~~~~~ 408 (529)
T 2v7b_A 390 VMYWNNREKSRATFLGEWI 408 (529)
T ss_dssp CCBTTCHHHHHHHEETTEE
T ss_pred cccCCChHHHHHhhhcCCc
Confidence 9999999999988 58887
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4e-57 Score=442.82 Aligned_cols=357 Identities=18% Similarity=0.281 Sum_probs=302.0
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
||+.+.|+++++++||++|+++.++++||+||.++++++|+.|.++ .+.++|++|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~----------------~~~~~g~~V~i~~~n~~~ 64 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYGHMEPH 64 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTT----------------SCSSSCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCeEEEEecCCHH
Confidence 8999999999999999999999999999999999999999999885 478899999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCC--ceeccCCCCCCCCCcccccc
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQ 158 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 158 (409)
++++++||+++|++++|+++.++.+++.++++.++++++|++..... ..... .......... . ..
T Consensus 65 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~~~~~~~~------~-~~ 131 (511)
T 3e7w_A 65 MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQTVSAEELLE------N-EG 131 (511)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSCEEEHHHHHT------S-CS
T ss_pred HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc------hhcccccceecHhhhhc------c-cc
Confidence 99999999999999999999999999999999999999999754210 00000 0000000000 0 00
Q ss_pred chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (409)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~ 238 (409)
..........++++++|+|||||||.||+|.++|+++.+.+.+....++++++|++++.+|++|..+++ .++.++..|+
T Consensus 132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~ 210 (511)
T 3e7w_A 132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGG 210 (511)
T ss_dssp CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTC
T ss_pred CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHH-HHHHHHhcCC
Confidence 001112234678999999999999999999999999999999998889999999999999999999975 5889999999
Q ss_pred EEEEccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCC
Q 015313 239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (409)
Q Consensus 239 ~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~ 315 (409)
++++.+. +++..+++. ++++++|+++++|+++..+++... .....++++|.+++||+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~~G~~l 272 (511)
T 3e7w_A 211 TLHCVTKDAVNKPKVLFEE----------LKKSGLNVWTSTPSFVQMCLMDPG--------FSQDLLPHADTFMFCGEVL 272 (511)
T ss_dssp EEEECCHHHHHSHHHHHHH----------HHHHCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcChhhhcCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------cccccCCcccEEEEecCCC
Confidence 9999886 578888888 778999999999999999987532 2335678999999999999
Q ss_pred CHHHHHHHHHHh-CCccccccccccccccccccCC-----CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc
Q 015313 316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP 388 (409)
Q Consensus 316 ~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~-----~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~ 388 (409)
++++.+++.+.+ ++++++.||+||+++.++.... ......++|+|+|+++++|+|++|++++.| .|||+|+||
T Consensus 273 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~ 352 (511)
T 3e7w_A 273 PVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP 352 (511)
T ss_dssp CHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEEST
T ss_pred CHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecC
Confidence 999999999999 8999999999999876553211 123456799999999999999999999888 899999999
Q ss_pred chhhhhcCCCcccchhh
Q 015313 389 SLFKEYWKLPKESRTLS 405 (409)
Q Consensus 389 ~~~~gY~~~~~~t~~~~ 405 (409)
+++.||||+|++|++.+
T Consensus 353 ~v~~GY~~~~~~t~~~f 369 (511)
T 3e7w_A 353 SVSRGYLGEPELTEKAF 369 (511)
T ss_dssp TSCCCBTTCHHHHHHHE
T ss_pred ccChhhCCCcccchhhh
Confidence 99999999999999986
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.5e-56 Score=441.89 Aligned_cols=369 Identities=18% Similarity=0.217 Sum_probs=304.8
Q ss_pred HHHHHHHhccc-----CCCeeEEEeC-----CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 015313 3 VFKAAYKKGSM-----ARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (409)
Q Consensus 3 ~~~~l~~~~~~-----~~~~~a~~~~-----~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~ 72 (409)
+.+.|.++++. +||++|+++. .+++||+||.++++++|+.|.+. +|+++||+|+
T Consensus 40 ~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~----------------~Gv~~gd~V~ 103 (570)
T 3c5e_A 40 ASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGA----------------CGLQRGDRVA 103 (570)
T ss_dssp HHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTT----------------TCCCTTCEEE
T ss_pred HHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHc----------------cCCCCCCEEE
Confidence 35778888888 9999999972 37899999999999999999983 3899999999
Q ss_pred EEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCc--eeccCCCCCCC
Q 015313 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS 150 (409)
Q Consensus 73 l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 150 (409)
|+++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+..+....... .+.+.... ..
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 182 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKS-CD 182 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSC-CT
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccC-cc
Confidence 9999999999999999999999999999999999999999999999999998877776654443321 11221100 00
Q ss_pred CCcccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHH--HHHHHHhhcccCCCCeEEEecCchhHH
Q 015313 151 SETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHVH 224 (409)
Q Consensus 151 ~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~~~~ 224 (409)
......+. ..........++++++|+|||||||.||+|.++|+ ++. ..... ..++++++|++++..|++|..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~ 260 (570)
T 3c5e_A 183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWIL 260 (570)
T ss_dssp TSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHH
T ss_pred ccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHH
Confidence 00000000 00011123457899999999999999999999999 554 44444 667888999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEcc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhh
Q 015313 225 GLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (409)
Q Consensus 225 g~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 302 (409)
+++..++.++..|+++++.+ .+++..+++. ++++++|+++++|++++.+.+.. ....++
T Consensus 261 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~ 321 (570)
T 3c5e_A 261 NILCSLMEPWALGACTFVHLLPKFDPLVILKT----------LSSYPIKSMMGAPIVYRMLLQQD---------LSSYKF 321 (570)
T ss_dssp HHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHTSC---------TTTCCC
T ss_pred HHHHHHHHHHHhCceEEEecCCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhcc---------cccccc
Confidence 98767889999999999987 6889999888 77899999999999999998741 123467
Q ss_pred ccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCc-cc
Q 015313 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VG 381 (409)
Q Consensus 303 ~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~G 381 (409)
++||.+++||+++++++.++|.+.+++++++.||+||+++.++.........+++|+|+++++++|+|+++++++.| .|
T Consensus 322 ~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~G 401 (570)
T 3c5e_A 322 PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEG 401 (570)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCE
T ss_pred ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCC
Confidence 89999999999999999999999999999999999999876655444445678999999999999999999999988 89
Q ss_pred eEEEe-----CcchhhhhcCCCcccchh-hcccC
Q 015313 382 EICVK-----SPSLFKEYWKLPKESRTL-SSCLY 409 (409)
Q Consensus 382 el~v~-----g~~~~~gY~~~~~~t~~~-~~g~~ 409 (409)
||+++ ||+++.||||+|+.|++. .+|||
T Consensus 402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~ 435 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFW 435 (570)
T ss_dssp EEEEECSSBCCTTCCCEETTCHHHHHHTEETTEE
T ss_pred eeEEeccCCCCchhhccccCChhHhhhhhcCCcc
Confidence 99999 999999999999999998 47887
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=9.6e-57 Score=444.24 Aligned_cols=351 Identities=20% Similarity=0.364 Sum_probs=291.0
Q ss_pred hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (409)
Q Consensus 2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~ 81 (409)
++.+.|.++++++||++|+++.++++||+||.++++++|+.|.+. |+++||+|+|+++|++++
T Consensus 40 ~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~e~ 102 (563)
T 1amu_A 40 TIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEK-----------------GIGKDTLVGIMMEKSIDL 102 (563)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHHH
T ss_pred cHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence 688999999999999999999999999999999999999999994 899999999999999999
Q ss_pred HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (409)
Q Consensus 82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (409)
+++++||+++|++++|+++.++.+++.++++.++++++|++++....+..+.. ......+.. ..... ....
T Consensus 103 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~------~~~~ 173 (563)
T 1amu_A 103 FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEE-DTIKI------REGT 173 (563)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCC-STTTT------SCCS
T ss_pred HHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecc-hhhcc------ccCc
Confidence 99999999999999999999999999999999999999999877654433211 111111111 00000 0000
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (409)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~ 241 (409)
.......++++++|+|||||||.||||.++|+++.+.+......++++++|++++.+|++|..+++ .++.+++.|++++
T Consensus 174 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 252 (563)
T 1amu_A 174 NLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASLY 252 (563)
T ss_dssp CCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred cCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEE
Confidence 111234578999999999999999999999999999888888888999999999999999999885 5888999999999
Q ss_pred EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313 242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (409)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~ 318 (409)
+.+. +++..+++. ++++++|++.++|+++..+... .++++|.+++||++++++
T Consensus 253 ~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------------~~~~lr~~~~gG~~l~~~ 308 (563)
T 1amu_A 253 IILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLDPE--------------RILSIQTLITAGSATSPS 308 (563)
T ss_dssp ECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSCTT--------------TCCSCSEEEEESSCCCHH
T ss_pred EcChHhhcCHHHHHHH----------HHHcCCcEEEeCHHHHHHHHhc--------------ccccccEEEEEEecCCHH
Confidence 9886 577777777 7779999999999998776432 367899999999999999
Q ss_pred HHHHHHHHhCCccccccccccccccccccC---CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhh
Q 015313 319 VMQQWETITGHRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY 394 (409)
Q Consensus 319 ~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~---~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY 394 (409)
+.++|.+. +++++.||+||+++.++... .......++|+|+++++++|+|+++++++.| .|||+++||+++.||
T Consensus 309 ~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY 386 (563)
T 1amu_A 309 LVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGY 386 (563)
T ss_dssp HHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEE
T ss_pred HHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhh
Confidence 99998774 78999999999986554321 1223567899999999999999999999888 899999999999999
Q ss_pred cCCCcccchhh
Q 015313 395 WKLPKESRTLS 405 (409)
Q Consensus 395 ~~~~~~t~~~~ 405 (409)
||+|++|++.+
T Consensus 387 ~~~pe~t~~~f 397 (563)
T 1amu_A 387 WKRPELTSQKF 397 (563)
T ss_dssp TTCHHHHHHHE
T ss_pred CCCchhhhhhc
Confidence 99999999985
No 19
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.2e-56 Score=446.74 Aligned_cols=374 Identities=19% Similarity=0.236 Sum_probs=303.0
Q ss_pred HHHHHHHhcccCCCeeEEEe------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313 3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (409)
Q Consensus 3 ~~~~l~~~~~~~~~~~a~~~------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~ 76 (409)
+.+.|.++++++||++|+++ ..+++||+||+++++++|+.|++ +|+++||+|+|+++
T Consensus 78 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~ 140 (652)
T 1pg4_A 78 AANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMP 140 (652)
T ss_dssp HHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECC
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeC
Confidence 45677788889999999997 34689999999999999999999 49999999999999
Q ss_pred CCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhccC---C-ceecc
Q 015313 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG---A-KFSLI 143 (409)
Q Consensus 77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~---~-~~~~~ 143 (409)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+........ . ..+.+
T Consensus 141 ~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 220 (652)
T 1pg4_A 141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220 (652)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 233333333221 1 12222
Q ss_pred CCCCC-CC--CC--cccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHH-HHHhhcccCCCCe
Q 015313 144 PPVPN-VS--SE--TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ 213 (409)
Q Consensus 144 ~~~~~-~~--~~--~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~d~ 213 (409)
..... .. .. ....+. ..........++++++|+|||||||.||||+++|++++..+. .....++++++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 300 (652)
T 1pg4_A 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI 300 (652)
T ss_dssp CSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred eCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCE
Confidence 11110 00 00 000000 000111223568999999999999999999999999887664 4455678899999
Q ss_pred EEEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhh
Q 015313 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (409)
Q Consensus 214 ~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~ 289 (409)
+++..|++|..++...++.+|+.|+++++.+. +++..+++. ++++++|+++++|++++.+++....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~ 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCcc
Confidence 99999999999986668899999999999885 578888888 7889999999999999999875321
Q ss_pred hhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccC--CCCCCccccccccCCe
Q 015313 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGV 364 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~--~~~~~~~~~G~p~~~~ 364 (409)
.....++++||.+++||+++++++.+++.+.+| +++++.||+||+++.++... ....+.+++|+|++++
T Consensus 371 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~ 444 (652)
T 1pg4_A 371 ------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV 444 (652)
T ss_dssp ------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC
T ss_pred ------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCC
Confidence 123356899999999999999999999999988 89999999999987655432 2245678999999999
Q ss_pred EEEEeeCCCCCCCCc-cceEEEeC--cchhhhhcCCCcccchhh----cccC
Q 015313 365 QVKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKESRTLS----SCLY 409 (409)
Q Consensus 365 ~~~ivd~~~~~~~~~-~Gel~v~g--~~~~~gY~~~~~~t~~~~----~g~~ 409 (409)
+++|+|++|++++.| .|||+++| |+++.||||+|+.+.+.+ +|||
T Consensus 445 ~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y 496 (652)
T 1pg4_A 445 QPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496 (652)
T ss_dssp CEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred eEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEE
Confidence 999999999999888 79999999 799999999999998873 7887
No 20
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.1e-56 Score=438.62 Aligned_cols=355 Identities=35% Similarity=0.560 Sum_probs=295.1
Q ss_pred ChHHHHHHHhcccCCC-eeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH
Q 015313 1 MEVFKAAYKKGSMARD-SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~-~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~ 79 (409)
+|+.+.|.++++++|+ ++|+++.++++||+||.++++++|..|.. |++|+++++|++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~----------------------~~~V~i~~~~~~ 79 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG----------------------AGRVAVWATPAM 79 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC-------------------------CEEEECCSSH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhccC----------------------CCEEEEEcCCCH
Confidence 3567788889999997 99999999999999999999999987743 789999999999
Q ss_pred HHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccC-CceeccCCCCCCCCCcccccc
Q 015313 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETTVFDQ 158 (409)
Q Consensus 80 ~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (409)
+++++++||+++|++++|+++.++.+++.+++++++++++|++.+.. ...... ........ . .
T Consensus 80 ~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~-~----------~ 143 (505)
T 3nyq_A 80 ETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPPALGALERVDVDV-R----------A 143 (505)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCGGGTTSEEEECCT-T----------C
T ss_pred HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cchhhcccccccccc-c----------c
Confidence 99999999999999999999999999999999999999999987521 000000 11111100 0 0
Q ss_pred chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (409)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~ 238 (409)
..........++++++|+|||||||.||+|.++|+++...+......++++++|++++.+|++|..+++..++.++..|+
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (505)
T 3nyq_A 144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG 223 (505)
T ss_dssp CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence 00111233467899999999999999999999999999999999998999999999999999999998777899999999
Q ss_pred EEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (409)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~ 318 (409)
++++.+.+++..+++. + ++++|+++++|+++..+++.+...+. ....++++|.+++||++++++
T Consensus 224 ~~~~~~~~~~~~~~~~----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~l~~lr~i~~gg~~l~~~ 287 (505)
T 3nyq_A 224 SVRHLGRFSTEGAARE----------L-NDGATMLFGVPTMYHRIAETLPADPE-----LAKALAGARLLVSGSAALPVH 287 (505)
T ss_dssp EEEECSSCCHHHHHHH----------H-TTTCCEEEECHHHHHHHHHHGGGCHH-----HHHHHHHCSEEEECSSCCCHH
T ss_pred EEEECCCCChHHHHHH----------H-hhCCeEEEehHHHHHHHHHhhhcCch-----hhcccccceEEEECCCCCCHH
Confidence 9999999999998888 5 67999999999999999886443221 334678899999999999999
Q ss_pred HHHHHHHHhCCccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCC---c-cceEEEeCcchhhhh
Q 015313 319 VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA---G-VGEICVKSPSLFKEY 394 (409)
Q Consensus 319 ~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~---~-~Gel~v~g~~~~~gY 394 (409)
+.+++.+.+++++++.||+||+++.+..........+++|+|+++++++|+|++|++++. | +|||+++||+++.||
T Consensus 288 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY 367 (505)
T 3nyq_A 288 DHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEY 367 (505)
T ss_dssp HHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEE
T ss_pred HHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhh
Confidence 999999999999999999999997776655556677899999999999999999988764 5 899999999999999
Q ss_pred cCCCcccchhh--cccC
Q 015313 395 WKLPKESRTLS--SCLY 409 (409)
Q Consensus 395 ~~~~~~t~~~~--~g~~ 409 (409)
||+|++|++.| ||||
T Consensus 368 ~~~~~~t~~~f~~~g~y 384 (505)
T 3nyq_A 368 LNRPDATAAAFTEDGFF 384 (505)
T ss_dssp TTCHHHHHHTBCTTSCE
T ss_pred CCChhHhhhhhcCCCCC
Confidence 99999999995 8997
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.1e-56 Score=441.02 Aligned_cols=351 Identities=21% Similarity=0.284 Sum_probs=293.2
Q ss_pred hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (409)
Q Consensus 2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~ 81 (409)
++.+.|.++++++||++|+++.++++||+||.++++++|+.|++. |+++||+|+|+++|++++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~~ 138 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGL-----------------GVAPGTLVGVHLERGFDM 138 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence 678999999999999999999999999999999999999999994 999999999999999999
Q ss_pred HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (409)
Q Consensus 82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (409)
+++++||+++|++++|+++.++.+++.++++.++++++|++.+....+. ............ ......
T Consensus 139 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~ 205 (570)
T 4gr5_A 139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT------GTTTLYVEDEAA-------SDAPAG 205 (570)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC------SSEEEECCC--------------CC
T ss_pred HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc------CCcceeeecccc-------cccccc
Confidence 9999999999999999999999999999999999999999976432110 011111110000 000011
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (409)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~ 241 (409)
.......++++++|+|||||||.||+|.++|+++.+.+.. ....+++++|++++.+|++|..+.+ .++.++..|++++
T Consensus 206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 283 (570)
T 4gr5_A 206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV 283 (570)
T ss_dssp CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence 1122356789999999999999999999999999776544 3455788899999999999876654 5888999999999
Q ss_pred Ecc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (409)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~ 319 (409)
+.+ .+++..+++. ++++++|++.++|+++..+++.. ...+++||.+++||+++++++
T Consensus 284 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~lr~~~~gG~~l~~~~ 342 (570)
T 4gr5_A 284 LQSGQNPDPLEIGEL----------VARHGVTMLQLSASLFNFLVDEV-----------PEAFEGVRYAITGGEPASVPH 342 (570)
T ss_dssp ECSSSSCCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------GGGGTTCSEEEEESSCCCHHH
T ss_pred EcCCccCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc-----------hhhCCCceEEEEecccCCHHH
Confidence 987 4678888888 78899999999999999998752 235789999999999999999
Q ss_pred HHHHHHHh-CCccccccccccccccccccC----CCCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhh
Q 015313 320 MQQWETIT-GHRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE 393 (409)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~----~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~g 393 (409)
.+++.+.+ ++++++.||+||++++++... .......++|+|+++++++|+|+++++++.| +|||+|+||++++|
T Consensus 343 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~G 422 (570)
T 4gr5_A 343 VAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHG 422 (570)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCE
T ss_pred HHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchh
Confidence 99999987 789999999999987654321 1223456799999999999999999999888 89999999999999
Q ss_pred hcCCCcccchhh
Q 015313 394 YWKLPKESRTLS 405 (409)
Q Consensus 394 Y~~~~~~t~~~~ 405 (409)
|||+|++|++.|
T Consensus 423 Y~~~~~~t~~~f 434 (570)
T 4gr5_A 423 YVSRPALTAERF 434 (570)
T ss_dssp ETTCHHHHHHHE
T ss_pred cCCCchhhhccc
Confidence 999999999985
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=6.1e-56 Score=443.57 Aligned_cols=374 Identities=18% Similarity=0.245 Sum_probs=306.9
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
+++.+.|.++++ ||++|+++.++++||+||.++++++|+.|++. |+++||+|+++++|+++
T Consensus 27 ~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~gd~V~l~~~~s~~ 87 (617)
T 3rg2_A 27 LPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQ-----------------GIKPGETALVQLGNVAE 87 (617)
T ss_dssp CCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred CCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCcHH
Confidence 467889999988 99999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH-----HHHHHHhhccC-CceeccCCCCCCCCCcc
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETT 154 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (409)
++++++||+++|++++|+++.++.+++.++++++++++++++.+.. ........... .................
T Consensus 88 ~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (617)
T 3rg2_A 88 LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD 167 (617)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHH
T ss_pred HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhh
Confidence 9999999999999999999999999999999999999999987543 22222222111 11111111111000000
Q ss_pred cc-ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHHH
Q 015313 155 VF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA 232 (409)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~ 232 (409)
.. ............++++++|+|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|.+++.. .++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (617)
T 3rg2_A 168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG 247 (617)
T ss_dssp HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHH
Confidence 00 000111122345789999999999999999999999999999999999899999999999999999988754 5888
Q ss_pred HHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeC
Q 015313 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (409)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG 312 (409)
+++.|+++++.+..++..+++. ++++++|++.++|+++..+++...... ...++++||.+++||
T Consensus 248 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~l~~lr~i~~gG 311 (617)
T 3rg2_A 248 VFLAGGTVVLAADPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQALIEGE------SRAQLASLKLLQVGG 311 (617)
T ss_dssp HHHHTCEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHTTC------CTTTTTTCCEEEEES
T ss_pred HHHcCCEEEEeCCCCHHHHHHH----------HHHhCCcEEEcchHHHHHHHHhhhccc------ccccCCCccEEEEcC
Confidence 9999999999999899888888 778999999999999999987633211 223688999999999
Q ss_pred CCCCHHHHHHHHHHhCCccccccccccccccccccCCC-CCCcccccccc-CCeEEEEeeCCCCCCCCc-cceEEEeCcc
Q 015313 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPS 389 (409)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~-~~~~~~~G~p~-~~~~~~ivd~~~~~~~~~-~Gel~v~g~~ 389 (409)
+++++++.+++.+.+++++++.||+||+++.+...... .....++|.|+ ++.+++|+|+++++++.| +|||+++||+
T Consensus 312 e~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~ 391 (617)
T 3rg2_A 312 ARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPY 391 (617)
T ss_dssp SCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSS
T ss_pred CcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCcc
Confidence 99999999999999999999999999998655433221 22345789997 788999999999999998 8999999999
Q ss_pred hhhhhcCCCcccchhh--cccC
Q 015313 390 LFKEYWKLPKESRTLS--SCLY 409 (409)
Q Consensus 390 ~~~gY~~~~~~t~~~~--~g~~ 409 (409)
+++||||+|+.|++.| ||||
T Consensus 392 v~~GY~~~p~~t~~~f~~~~~y 413 (617)
T 3rg2_A 392 TFRGYYKSPQHNASAFDANGFY 413 (617)
T ss_dssp SCSCCTTCHHHHHHHBCTTSCE
T ss_pred ccchhcCChhhhhhccCCCCce
Confidence 9999999999999995 7887
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=6.1e-56 Score=465.36 Aligned_cols=374 Identities=20% Similarity=0.285 Sum_probs=313.5
Q ss_pred ChHHHHHHHhcccCCCeeEEEeC--CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~ 78 (409)
+++.+.|.++++++||++|+++. ++++||+||.++++++|+.|++. |+++||+|+|+++|+
T Consensus 61 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~ns 123 (979)
T 3tsy_A 61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKL-----------------GVNQNDVVMLLLPNC 123 (979)
T ss_dssp SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECSSC
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCcCEEEEEeCCC
Confidence 57899999999999999999986 68999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCC------C
Q 015313 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS------E 152 (409)
Q Consensus 79 ~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 152 (409)
++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+...........+.+........ .
T Consensus 124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (979)
T 3tsy_A 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF 203 (979)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence 9999999999999999999999999999999999999999999988766655554443333333322111000 0
Q ss_pred cccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh----hcccCCCCeEEEecCchhHH
Q 015313 153 TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVH 224 (409)
Q Consensus 153 ~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~ 224 (409)
...... ..........++++++|+|||||||.||+|.++|+++...+..... .+.+.++|++++.+|++|..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 000000 0111223456899999999999999999999999999988776643 34677899999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 015313 225 GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304 (409)
Q Consensus 225 g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 304 (409)
++...++.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....++++
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~ 345 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLEL----------IQRCKVTVAPMVPPIVLAIAKSSE--------TEKYDLSS 345 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHCGG--------GGTSCCTT
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHH----------HHHhCCeEEEcHHHHHHHHHhCcc--------ccCCCccc
Confidence 997778889999999999999999999988 778999999999999999987632 23456889
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCCCccccccccCCeEEEEeeC-CCCCCC
Q 015313 305 LRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAED-ESGSDA 377 (409)
Q Consensus 305 lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~-----~~~~~~~~~~G~p~~~~~~~ivd~-~~~~~~ 377 (409)
||.+++||+++++++.+++.+.+ ++++++.||+||++.+++.. .......+++|+|+++++++|+|+ ++++++
T Consensus 346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~ 425 (979)
T 3tsy_A 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLS 425 (979)
T ss_dssp CCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCC
Confidence 99999999999999999999999 89999999999998654422 223456788999999999999995 478888
Q ss_pred Cc-cceEEEeCcchhhhhcCCCcccchhh--cccC
Q 015313 378 AG-VGEICVKSPSLFKEYWKLPKESRTLS--SCLY 409 (409)
Q Consensus 378 ~~-~Gel~v~g~~~~~gY~~~~~~t~~~~--~g~~ 409 (409)
.| .|||+|+||++++||||+|+.|++.+ ||||
T Consensus 426 ~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~ 460 (979)
T 3tsy_A 426 RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWL 460 (979)
T ss_dssp TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCE
T ss_pred CCCccEEEEECCCccccccCChhhhhhhccCCCcE
Confidence 88 89999999999999999999999985 8897
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3.4e-56 Score=444.05 Aligned_cols=349 Identities=18% Similarity=0.200 Sum_probs=292.2
Q ss_pred hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (409)
Q Consensus 2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~ 81 (409)
++.+.|.++++++||++|+++.++++||+||.++++++|+.|++. |+++||+|+|+++|++++
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~ 90 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEH-----------------YPQPGVCLGVYGEYSRES 90 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHH-----------------CCSSCCEEEEESSSCHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence 688999999999999999999999999999999999999999994 899999999999999999
Q ss_pred HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (409)
Q Consensus 82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (409)
+++++||+++|++++|+++.++.+++.++++++++++++++....... ........... ......
T Consensus 91 vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~------~~~~~~~~~~~---------~~~~~~ 155 (620)
T 4dg8_A 91 ITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA------NGLPCVPVRHL---------PAAPAS 155 (620)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC------TTSCEEEGGGC---------CCCCCC
T ss_pred HHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc------cCCceeeeccC---------CcCCcc
Confidence 999999999999999999999999999999999999999765321100 00000000000 000011
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (409)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~ 241 (409)
.......++++++|+|||||||.||||.++|+++.+.+.. ...+++.++|+++...|++|..+++ .++.+++.|++++
T Consensus 156 ~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 233 (620)
T 4dg8_A 156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCV 233 (620)
T ss_dssp SSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence 1122345789999999999999999999999999876655 4566788999999999999999986 4899999999999
Q ss_pred Ecc--CcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHH
Q 015313 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (409)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~ 319 (409)
+.+ .+++..+++. ++++++|++.++|+++..+.+. ....+++||.+++||+++++++
T Consensus 234 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----------~~~~l~~lr~v~~gGe~l~~~~ 292 (620)
T 4dg8_A 234 LNDLGPLDPGVLRQL----------IGERGADSAWLTASLFNTLVDL-----------DPDCLGGLRQLLTGGDILSVPH 292 (620)
T ss_dssp ECCSSSCCHHHHHHH----------HHTTCCCEEEEEHHHHHHHHHH-----------CGGGGTTCSEEEEESSCCCHHH
T ss_pred eCccccCCHHHHHHH----------HHHhCCcEEEccHHHHHHHHhc-----------ChhhCCCccEEEEEeCcCCHHH
Confidence 965 5788888888 7889999999999999998763 2346789999999999999999
Q ss_pred HHHHHHHh-CCcccccccccccccccccc----CCCCCCccccccccCCeEEEEeeCCCCC-CCCc-cceEEEeCcchhh
Q 015313 320 MQQWETIT-GHRLLERYGMTEFVMAISNP----LRGARKAGTVGNPLPGVQVKIAEDESGS-DAAG-VGEICVKSPSLFK 392 (409)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~tE~g~~~~~~----~~~~~~~~~~G~p~~~~~~~ivd~~~~~-~~~~-~Gel~v~g~~~~~ 392 (409)
.+++.+.+ +++++|.||+||+++.++.. ........++|+|+++++++|+|+++++ ++.| +|||+++||++++
T Consensus 293 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~ 372 (620)
T 4dg8_A 293 VRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQ 372 (620)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCS
T ss_pred HHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecccccc
Confidence 99988876 88999999999998765421 1123456689999999999999999987 6677 8999999999999
Q ss_pred hhcCCCcccchhh
Q 015313 393 EYWKLPKESRTLS 405 (409)
Q Consensus 393 gY~~~~~~t~~~~ 405 (409)
||||+|++|++.|
T Consensus 373 GY~~~p~~t~~~f 385 (620)
T 4dg8_A 373 GYRNDAARTRASF 385 (620)
T ss_dssp EETTCHHHHHHHE
T ss_pred ccCCChhhhhhhh
Confidence 9999999999985
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.8e-56 Score=438.19 Aligned_cols=362 Identities=18% Similarity=0.274 Sum_probs=297.1
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
+|+.+.|.++++++||++|+.+.++++||+||.++++++|++|.+. |+++||+|+++++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~~~gd~V~i~~~n~~~ 66 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSL-----------------ALLAKSPVLVFGAQTYD 66 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------CCCTTCCEEEEECSSHH
T ss_pred HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHH
Confidence 3689999999999999999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccch
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
++++++||+++|++++|+++.++.+++.++++.++++++|++++....+. ......+... . ........
T Consensus 67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~------~~~~~~~~~~---~--~~~~~~~~ 135 (521)
T 3l8c_A 67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE------GISLVSLSEI---E--SAKLAEMP 135 (521)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT------TSEEEEHHHH---H--HHHHHTCC
T ss_pred HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc------cCcccchhhh---h--hcccccCC
Confidence 99999999999999999999999999999999999999999875321100 0000000000 0 00000000
Q ss_pred hhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh--cccCCCCeEEEecCchhHHHHHHHHHHHHhcCC
Q 015313 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (409)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~ 238 (409)
........++++++|+|||||||.||+|.++|+++.+.+.+.... +.....+++++..|++|..++. .++.++..|+
T Consensus 136 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 214 (521)
T 3l8c_A 136 YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG 214 (521)
T ss_dssp CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence 011223467899999999999999999999999999888777665 6778899999999999998875 4888899999
Q ss_pred EEEEccCc---chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCC
Q 015313 239 TVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (409)
Q Consensus 239 ~i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~ 315 (409)
++++.+.. ++..+++. +.++++|++.++|+++..+..... ....+++++|.+++||+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~l 276 (521)
T 3l8c_A 215 TLFALPKELVADFKQLFTT----------IAQLPVGIWTSTPSFADMAMLSDD--------FCQAKMPALTHFYFDGEEL 276 (521)
T ss_dssp EEEECCGGGTTCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcCHHHhhCHHHHHHH----------HHHcCCcEEEeCCCHHHHHhhhhc--------cccccCccceEEEEecccC
Confidence 99999875 67777777 778999999999999998876522 2335678999999999999
Q ss_pred CHHHHHHHHHHh-CCccccccccccccccccccCC-----CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCc
Q 015313 316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP 388 (409)
Q Consensus 316 ~~~~~~~~~~~~-~~~v~~~YG~tE~g~~~~~~~~-----~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~ 388 (409)
++++.+++.+.+ ++++++.||+||+++.++.... ......++|+|+|+++++|+|++|++++.| .|||+|+||
T Consensus 277 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~ 356 (521)
T 3l8c_A 277 TVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGP 356 (521)
T ss_dssp CHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEEST
T ss_pred CHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEeccc
Confidence 999999999998 8999999999999876543211 123456899999999999999999999888 899999999
Q ss_pred chhhhhcCCCcccchhh-----cccC
Q 015313 389 SLFKEYWKLPKESRTLS-----SCLY 409 (409)
Q Consensus 389 ~~~~gY~~~~~~t~~~~-----~g~~ 409 (409)
+++.||||+|++|++.+ +|||
T Consensus 357 ~v~~GY~~~~~~t~~~f~~~~~~~~~ 382 (521)
T 3l8c_A 357 AVSKGYLNNPEKTAEAFFTFKGQPAY 382 (521)
T ss_dssp TSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred ccChhhcCCchHhhccCcCCCCceee
Confidence 99999999999999985 6787
No 26
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-55 Score=443.41 Aligned_cols=374 Identities=18% Similarity=0.258 Sum_probs=301.6
Q ss_pred HHHHHHHhcccCCCeeEEEe------CCccccHHHHHHHHHHHHHHHh-hCCCCcccccccccccccccCCCCCEEEEEe
Q 015313 3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLC-SNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (409)
Q Consensus 3 ~~~~l~~~~~~~~~~~a~~~------~~~~~Ty~~l~~~~~~~a~~L~-~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~ 75 (409)
+.+.|.++++++||++|+++ ..+++||+||.+++.++|+.|+ + +|+++||+|+|++
T Consensus 84 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-----------------~Gv~~Gd~V~i~~ 146 (663)
T 1ry2_A 84 CYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-----------------MGVRKGDTVAVYM 146 (663)
T ss_dssp HHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-----------------SCCCTTCEEEECC
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEEc
Confidence 45778889999999999998 3478999999999999999999 7 4999999999999
Q ss_pred CCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH---------HHHHHHHhhccC-C-ceeccC
Q 015313 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG-A-KFSLIP 144 (409)
Q Consensus 76 ~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~-~~~~~~ 144 (409)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.+...... . ..+.+.
T Consensus 147 ~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~ 226 (663)
T 1ry2_A 147 PMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYR 226 (663)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999998753 233444333222 1 122222
Q ss_pred CCCC--CC--CC--cccccc----chhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHH-HHHhhcccCCCCe
Q 015313 145 PVPN--VS--SE--TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ 213 (409)
Q Consensus 145 ~~~~--~~--~~--~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~d~ 213 (409)
.... .. .. ....+. ..........++++++|+|||||||.||||+++|++++.... .....+++.++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 306 (663)
T 1ry2_A 227 KTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDV 306 (663)
T ss_dssp SSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCE
T ss_pred cCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcE
Confidence 1110 00 00 000000 000112234578999999999999999999999999886664 3455678899999
Q ss_pred EEEecCchhHHHHHHHHHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhh
Q 015313 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (409)
Q Consensus 214 ~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~ 289 (409)
+++..|++|..++...++.+|+.|+++++.+. +++..+++. ++++++|+++++|++++.+.+....
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~~ 376 (663)
T 1ry2_A 307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGDS 376 (663)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH----------HHHcCCCEEEecHHHHHHHHhcCcc
Confidence 99999999999986668899999999999875 578888888 7889999999999999999765221
Q ss_pred hhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC---CccccccccccccccccccC---CCCCCccccccccCC
Q 015313 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPG 363 (409)
Q Consensus 290 ~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~g~~~~~~~---~~~~~~~~~G~p~~~ 363 (409)
.....++++||.+++||+++++++.+++.+.+| +++++.||+||+++.+.... ....+.+++|+|+++
T Consensus 377 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g 450 (663)
T 1ry2_A 377 ------YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFG 450 (663)
T ss_dssp ------SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTT
T ss_pred ------ccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCC
Confidence 012346899999999999999999999999988 89999999999986554332 234577899999999
Q ss_pred eEEEEeeC-CCCCCCC-c-cceEEEeC--cchhhhhcCCCcccchhh----cccC
Q 015313 364 VQVKIAED-ESGSDAA-G-VGEICVKS--PSLFKEYWKLPKESRTLS----SCLY 409 (409)
Q Consensus 364 ~~~~ivd~-~~~~~~~-~-~Gel~v~g--~~~~~gY~~~~~~t~~~~----~g~~ 409 (409)
++++|+|+ +|++++. | .|||+++| |+++.|||++|++|.+.+ +|||
T Consensus 451 ~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y 505 (663)
T 1ry2_A 451 IDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY 505 (663)
T ss_dssp CCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSE
T ss_pred CeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEE
Confidence 99999998 8888876 6 79999999 589999999999998873 7897
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1e-55 Score=432.06 Aligned_cols=362 Identities=22% Similarity=0.288 Sum_probs=294.2
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~ 80 (409)
||+.+.|.++++++||++|+++.++++||+||.++++++|+.|++ . +||+|+|+++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~---~gd~V~i~~~n~~e 60 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKA-----------------Y---QQSRVGLYIDNSIQ 60 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHT-----------------T---CCSEEEEECCSSHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHH-----------------c---CCCEEEEEcCCCHH
Confidence 789999999999999999999999999999999999999999987 2 79999999999999
Q ss_pred HHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCC-CCC----------C
Q 015313 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VPN----------V 149 (409)
Q Consensus 81 ~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~ 149 (409)
++++++||+++|++++|+++.++.+++.++++.++++++|++.+..................... ... .
T Consensus 61 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (501)
T 3ipl_A 61 SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140 (501)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence 99999999999999999999999999999999999999999875432211100000000000000 000 0
Q ss_pred CCCcccc--ccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH
Q 015313 150 SSETTVF--DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227 (409)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~ 227 (409)
....... ............++++++|+|||||||.||+|.++|+++...+......++++++|++++.+|++|..++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence 0000000 00111122345679999999999999999999999999999999998889999999999999999999996
Q ss_pred HHHHHHHhcCCEEEEccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceE
Q 015313 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307 (409)
Q Consensus 228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~ 307 (409)
. ++.++..|+++++.+.+++..+++. ++++++|+++++|+++..+++.... ...+||.
T Consensus 221 ~-~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~-----------~~~~lr~ 278 (501)
T 3ipl_A 221 V-LLRAVIEGFTVRIVDKFNAEQILTM----------IKNERITHISLVPQTLNWLMQQGLH-----------EPYNLQK 278 (501)
T ss_dssp H-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHHHTCC-----------SCTTCCE
T ss_pred H-HHHHHHcCceEEeCCCCCHHHHHHH----------HHHcCCcEEEchHHHHHHHHhcCCC-----------CcCcccE
Confidence 5 8889999999999999999999998 7889999999999999999875321 1227999
Q ss_pred EEeeCCCCCHHHHHHHHHHhCCccccccccccccccccccCC--CCCCccccccccCCeEEEEeeCCCCCCCCccceEEE
Q 015313 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICV 385 (409)
Q Consensus 308 v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~--~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v 385 (409)
+++||+++++++.+++.+ +++++++.||+||+++.+..... .....+++|+|+++++++|+|++ +++.|||++
T Consensus 279 i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~GEl~v 353 (501)
T 3ipl_A 279 ILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN----KEGHGELMI 353 (501)
T ss_dssp EEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC----SSCCEEEEE
T ss_pred EEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC----CCCccEEEE
Confidence 999999999999999987 59999999999999865443221 22466789999999999999976 334799999
Q ss_pred eCcchhhhhcCCCcccchhhcccC
Q 015313 386 KSPSLFKEYWKLPKESRTLSSCLY 409 (409)
Q Consensus 386 ~g~~~~~gY~~~~~~t~~~~~g~~ 409 (409)
+||++++|||++|+.|++..+|||
T Consensus 354 ~g~~~~~gY~~~~~~t~~~~~g~~ 377 (501)
T 3ipl_A 354 KGANVMNGYLYPTDLTGTFENGYF 377 (501)
T ss_dssp ESTTSCSCCSBSTTCCCSEETTEE
T ss_pred eccchhhhhCcChhhcchhcCCce
Confidence 999999999999999998889997
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.6e-55 Score=439.32 Aligned_cols=366 Identities=21% Similarity=0.327 Sum_probs=300.2
Q ss_pred ChHHHHHHHhcccCCCeeEEEeC----CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeC
Q 015313 1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~----~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~ 76 (409)
+|+.+.|.++++++||++|+++. ++++||+||.++++++|+.|.+. |+++||+|+++++
T Consensus 11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------gv~~gd~V~i~~~ 73 (590)
T 3kxw_A 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAE-----------------GAKPGDRVLLLFA 73 (590)
T ss_dssp SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence 57899999999999999999873 58999999999999999999995 8999999999999
Q ss_pred CCHHHHHHHHHHHhhCcEEEeCCCCCC---hHHHHHHHhcCCceEEEechhHHHHHHHHh-hccCC--ceeccCCCCCCC
Q 015313 77 PSFEFVAGVLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGA--KFSLIPPVPNVS 150 (409)
Q Consensus 77 ~~~~~~~~~~A~~~~G~~~~~i~~~~~---~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~ 150 (409)
|+++++++++||+++|++++|+++..+ .+++.++++.+++++++++.+....+.... ..... ....+. ....
T Consensus 74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 151 (590)
T 3kxw_A 74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA-LESI- 151 (590)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE-GGGC-
T ss_pred CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee-chhc-
Confidence 999999999999999999999999884 468899999999999999988766543322 11100 000000 0000
Q ss_pred CCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 015313 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (409)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~ 230 (409)
..............++++++|+|||||||.||+|.++|++++..+......++++++|++++.+|++|..|++..+
T Consensus 152 ----~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 227 (590)
T 3kxw_A 152 ----ELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCI 227 (590)
T ss_dssp ----CGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTT
T ss_pred ----cccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHH
Confidence 0001111123345678999999999999999999999999999999999999999999999999999999987668
Q ss_pred HHHHhcCCEEEEccCc----chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccce
Q 015313 231 LAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306 (409)
Q Consensus 231 ~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr 306 (409)
+.+++.|+++++.+.+ ++..+++. ++++++|++.++|.++..+++.+... .....++++||
T Consensus 228 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~lr 292 (590)
T 3kxw_A 228 LTPIYGGIQAIMMSPFSFLQNPLSWLKH----------ITKYKATISGSPNFAYDYCVKRIREE-----KKEGLDLSSWV 292 (590)
T ss_dssp HHHHHHTCEEEECCHHHHHHCTHHHHHH----------HHHHTCSEEEECTHHHHHHHHHCCGG-----GGTTCCCTTCC
T ss_pred HHHHhcCceEEEeCHHHHHHCHHHHHHH----------HHHhCCeeecCChhHHHHHHHHhhhh-----hccCCCchhhH
Confidence 8999999999999876 67888888 78899999999999999988754321 12345789999
Q ss_pred EEEeeCCCCCHHHHHHHHHHhC------CccccccccccccccccccC---------------------------CCCCC
Q 015313 307 LMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPL---------------------------RGARK 353 (409)
Q Consensus 307 ~v~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~tE~g~~~~~~~---------------------------~~~~~ 353 (409)
.+++||+++++++.++|.+.++ .++++.||+||++++++... .....
T Consensus 293 ~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (590)
T 3kxw_A 293 TAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYK 372 (590)
T ss_dssp EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEE
T ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcce
Confidence 9999999999999999999883 37999999999987655321 11234
Q ss_pred ccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCcchhhhhcCCCcccchhhc
Q 015313 354 AGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKESRTLSS 406 (409)
Q Consensus 354 ~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~~~ 406 (409)
..++|+|+++ ++|+|++ +++++.| +|||+|+||++++||||+|++|++.|.
T Consensus 373 ~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~ 425 (590)
T 3kxw_A 373 LVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFA 425 (590)
T ss_dssp EECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHC
T ss_pred EeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHh
Confidence 5678999987 8899988 6788888 899999999999999999999999974
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.1e-54 Score=430.18 Aligned_cols=368 Identities=18% Similarity=0.278 Sum_probs=307.0
Q ss_pred hHHHHHHHhcccCCCeeEEEeC---CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC
Q 015313 2 EVFKAAYKKGSMARDSVAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (409)
Q Consensus 2 ~~~~~l~~~~~~~~~~~a~~~~---~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~ 78 (409)
++.+.|.++++++|+.+++... ++++||+||.++++++|+.|++. |+++||+|+++++|+
T Consensus 22 tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~ 84 (576)
T 3gqw_A 22 TLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSL-----------------NLKKGDRVALIAETS 84 (576)
T ss_dssp SHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHT-----------------CCCTTCEEEEECCSS
T ss_pred cHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCc
Confidence 6889999999999999998763 47999999999999999999994 999999999999999
Q ss_pred HHHHHHHHHHHhhCcEEEeCCCCCC-------hHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCC-CCCCC
Q 015313 79 FEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VPNVS 150 (409)
Q Consensus 79 ~~~~~~~~A~~~~G~~~~~i~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 150 (409)
++++++++||+++|++++|+++.++ .+++.++++.++++++|++.+..+.+................ .....
T Consensus 85 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (576)
T 3gqw_A 85 SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALP 164 (576)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHHHHHTSC
T ss_pred HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchhhhhccc
Confidence 9999999999999999999999998 789999999999999999998887776655433221111000 00000
Q ss_pred CCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh-cccCCCCeEEEecCchhHHHHHHH
Q 015313 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-WEYTSADQFLHCLPLHHVHGLFNA 229 (409)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~d~~l~~~pl~~~~g~~~~ 229 (409)
..........++++++|+|||||||.||+|.++|+++...+...... +++.++|++++.+|++|..+++..
T Consensus 165 --------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 236 (576)
T 3gqw_A 165 --------EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGF 236 (576)
T ss_dssp --------CCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHH
T ss_pred --------ccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHH
Confidence 00011223457899999999999999999999999999988877654 788999999999999999999777
Q ss_pred HHHHHhcCCEEEEccC----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccc
Q 015313 230 LLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305 (409)
Q Consensus 230 ~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~l 305 (409)
++.++..|+++++.+. +++..+++. ++++++|+++++|.++..+.+.... ......+++++
T Consensus 237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~-----~~~~~~~l~~l 301 (576)
T 3gqw_A 237 LLTPVATQLSVDYLRTQDFAMRPLQWLKL----------ISKNRGTVSVAPPFGYELCQRRVNE-----KDLAELDLSCW 301 (576)
T ss_dssp THHHHHTTCCEEECCHHHHHHCTTHHHHH----------HHHTTCCEEEECHHHHHHHHHSCCH-----HHHTTCCCTTC
T ss_pred HHHHHhcCceEEEcchhHhhhCHHHHHHH----------HHHhCCeEEEcCHHHHHHHHHHhcc-----cccccCChhhh
Confidence 8888999999998874 578888888 7789999999999999888765332 23345678999
Q ss_pred eEEEeeCCCCCHHHHHHHHHHh------CCccccccccccccccccccCCCC----------------------------
Q 015313 306 RLMMCGSSALPLPVMQQWETIT------GHRLLERYGMTEFVMAISNPLRGA---------------------------- 351 (409)
Q Consensus 306 r~v~~gG~~~~~~~~~~~~~~~------~~~v~~~YG~tE~g~~~~~~~~~~---------------------------- 351 (409)
|.+++||+++++++.++|.+.+ ++++++.||+||+++.++......
T Consensus 302 r~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 381 (576)
T 3gqw_A 302 RVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAV 381 (576)
T ss_dssp CEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCE
T ss_pred HhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCc
Confidence 9999999999999999999988 678999999999987665332110
Q ss_pred CCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhhhhcCCCcccchh-hcccC
Q 015313 352 RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKESRTL-SSCLY 409 (409)
Q Consensus 352 ~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~ 409 (409)
....++|+|+|+++++|+|++|++++.| +|||+++||++++|||++|+.|++. .||||
T Consensus 382 ~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~ 441 (576)
T 3gqw_A 382 STFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWL 441 (576)
T ss_dssp EEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCE
T ss_pred cceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeCccccccccCCccccccccCCCee
Confidence 0123789999999999999999999988 8999999999999999999998887 78997
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=9.6e-54 Score=423.79 Aligned_cols=362 Identities=17% Similarity=0.215 Sum_probs=285.0
Q ss_pred ChHHHHHHHhcccCCCeeEEEeCC----------ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCE
Q 015313 1 MEVFKAAYKKGSMARDSVAIRADQ----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70 (409)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~a~~~~~----------~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~ 70 (409)
||+.+.|.++++++||++|+++.. +++||+||.++++++|+.|.+. |+ +||+
T Consensus 20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------g~-~gd~ 81 (562)
T 3ite_A 20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA-----------------SL-HGRA 81 (562)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT-----------------TC-SSCE
T ss_pred CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc-----------------CC-CCCE
Confidence 678899999999999999998743 7899999999999999999984 88 7999
Q ss_pred EEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCC
Q 015313 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS 150 (409)
Q Consensus 71 V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (409)
|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++....+ ........+.. ....
T Consensus 82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~-~~~~ 155 (562)
T 3ite_A 82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDT-KNQS 155 (562)
T ss_dssp EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEET-TCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecc-cchh
Confidence 99999999999999999999999999999999999999999999999999986543211 00000000000 0000
Q ss_pred CCccccccchhhhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh--------cccCCCCeEEEecCchh
Q 015313 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------WEYTSADQFLHCLPLHH 222 (409)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~~ 222 (409)
..................++++++|+|||||||.||+|.++|+++.+.+..+... +.+...+++++..|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 156 FIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred hhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 0000000000011123356788999999999999999999999999877765443 34778899999999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEccCcc-hHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhh
Q 015313 223 VHGLFNALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301 (409)
Q Consensus 223 ~~g~~~~~~~~l~~G~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 301 (409)
..++. .++.++..|+++++.+.+. +..+++. ++++++|++.++|++++.+... ..+
T Consensus 236 ~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~~~~~------------~~~ 292 (562)
T 3ite_A 236 DVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRT----------FRELGVTHAGIVPSLLDQTGLV------------PED 292 (562)
T ss_dssp THHHH-HHHHHHHTTCEEEECCHHHHHHSHHHH----------HHHTTCCEEEECHHHHHHHTCC------------GGG
T ss_pred hhhHH-HHHHHHhcccEEEecchhhCHHHHHHH----------HHHcCCCEEEcCHHHHhhcccC------------ccc
Confidence 88774 5788899999999987654 3555566 7779999999999988766432 236
Q ss_pred hccceEEEeeCCCCCHHHHHHHHHHhCCccccccccccccccccc-cCCCCCCccccccccCCeEEEEeeCC-CCCCCCc
Q 015313 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG 379 (409)
Q Consensus 302 ~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~-~~~~~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~ 379 (409)
+++||.+++||+++++++.++|.+.+++++++.||+||+++.++. ........+++|+|+++++++|+|++ +++++.|
T Consensus 293 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g 372 (562)
T 3ite_A 293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKG 372 (562)
T ss_dssp STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTT
T ss_pred cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCC
Confidence 789999999999999999999999889999999999999865543 22334566789999999999999965 5667877
Q ss_pred -cceEEEeCcchhhhhcCCCcccchh-hcc--cC
Q 015313 380 -VGEICVKSPSLFKEYWKLPKESRTL-SSC--LY 409 (409)
Q Consensus 380 -~Gel~v~g~~~~~gY~~~~~~t~~~-~~g--~~ 409 (409)
.|||+++||++++||||+|++|+.. .|| ||
T Consensus 373 ~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~ 406 (562)
T 3ite_A 373 MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMY 406 (562)
T ss_dssp SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEE
T ss_pred CceEEEEeccccchhhCCCccccccccCCCCEEE
Confidence 8999999999999999999999877 566 87
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.7e-52 Score=447.20 Aligned_cols=355 Identities=22% Similarity=0.329 Sum_probs=294.3
Q ss_pred hHHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH
Q 015313 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (409)
Q Consensus 2 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~ 81 (409)
++.+.|.++++++||++|+++.++++||+||.++++++|+.|++. |+++|++|+|+++|++++
T Consensus 465 ~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~ 527 (1304)
T 2vsq_A 465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKH-----------------GAGKGSVVALYTKRSLEL 527 (1304)
T ss_dssp CHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhc-----------------CcCCcCEEEEEeCCCHHH
Confidence 578899999999999999999999999999999999999999995 899999999999999999
Q ss_pred HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHHhhccCCceeccCCCCCCCCCccccccchh
Q 015313 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (409)
Q Consensus 82 ~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (409)
+++++||+++|++++|++|.++.+++.++++++++++++++.+....+..+.. ......+... . .. .....
T Consensus 528 vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~--~~~~~~~~~~---~---~~-~~~~~ 598 (1304)
T 2vsq_A 528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY--TGTTLFIDDQ---T---RF-EEQAS 598 (1304)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC--CSEEEESSCG---G---GG-GSCSS
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC--CCcEEEeccc---c---cc-ccccC
Confidence 99999999999999999999999999999999999999999764322111100 0111111110 0 00 00011
Q ss_pred hhccCCCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEE
Q 015313 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (409)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~ 241 (409)
.......++++++|+|||||||.||||.++|+++.+. .+....++++++|+++...|++|..+.+ .++.++..|++++
T Consensus 599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLI 676 (1304)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEE
Confidence 1122346789999999999999999999999999865 4445567788999999999999888774 5899999999999
Q ss_pred EccC---cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHH
Q 015313 242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (409)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~ 318 (409)
+.+. .++..+.+. +.++++|+++++|++++.+.+.. ...+++||.+++||++++++
T Consensus 677 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~p~~~~~l~~~~-----------~~~~~~lr~~~~gGe~l~~~ 735 (1304)
T 2vsq_A 677 IADEHTLLDTERLTDL----------ILQENVNVMFATTALFNLLTDAG-----------EDWMKGLRCILFGGERASVP 735 (1304)
T ss_dssp ECCGGGTTCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------SHHHHTCSEEEEESSCCCHH
T ss_pred ECChhhcCCHHHHHHH----------HHHcCCcEEEccHHHHHHHHhhc-----------hhcCCCccEEEEecCCCCHH
Confidence 9985 578888888 77799999999999999987641 12467899999999999999
Q ss_pred HHHHHHHHhC-CccccccccccccccccccCC----CCCCccccccccCCeEEEEeeCCCCCCCCc-cceEEEeCcchhh
Q 015313 319 VMQQWETITG-HRLLERYGMTEFVMAISNPLR----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK 392 (409)
Q Consensus 319 ~~~~~~~~~~-~~v~~~YG~tE~g~~~~~~~~----~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~-~Gel~v~g~~~~~ 392 (409)
+.++|.+.++ ++++|.||+||+++.++.... ......++|+|+++++++|+|++++++|.| +|||+|+|+++++
T Consensus 736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~ 815 (1304)
T 2vsq_A 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSK 815 (1304)
T ss_dssp HHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCC
T ss_pred HHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCc
Confidence 9999999884 799999999999876553211 223456799999999999999999999998 8999999999999
Q ss_pred hhcCCCcccchhh
Q 015313 393 EYWKLPKESRTLS 405 (409)
Q Consensus 393 gY~~~~~~t~~~~ 405 (409)
||||+|++|++.|
T Consensus 816 GY~~~p~~T~~~f 828 (1304)
T 2vsq_A 816 GYVNRADLTKEKF 828 (1304)
T ss_dssp CBTTCHHHHHHHE
T ss_pred cccCCcccchhhh
Confidence 9999999999986
No 32
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=5.5e-31 Score=246.96 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=178.3
Q ss_pred CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHH---hhcccCCCCeEEEecCc-hhHHHHHHHHHHHHhcCCEEEE
Q 015313 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (409)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~~l~~G~~i~~ 242 (409)
..++++++++|||||||.||+|.++|+++...+.+.. ...++.++|++++.+|+ .|..++.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 3678899999999999999999999999998887543 44567889999999999 89988865 566688999 666
Q ss_pred ccCcchH-----------------------HHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhh
Q 015313 243 MPKFSVR-----------------------GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (409)
Q Consensus 243 ~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~ 299 (409)
...+++. .+++. ++++++|++.++|+++..|++.. ....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~--------~~~~ 227 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT----------LMNQDIRFLVTTPPVLRELLKRP--------EVVL 227 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------HHHSCEEEEEECHHHHHHHTTCH--------HHHH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHHhhh--------hhhc
Confidence 7666666 55555 77899999999999999998762 2233
Q ss_pred hhhccceEEEeeCCCCCHHHHHHHH-HHh-CCccccccccccccccccccCCCCCCccccccc------cCCeEEEEeeC
Q 015313 300 SAAKQLRLMMCGSSALPLPVMQQWE-TIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNP------LPGVQVKIAED 371 (409)
Q Consensus 300 ~~~~~lr~v~~gG~~~~~~~~~~~~-~~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p------~~~~~~~ivd~ 371 (409)
.+++++|.+++||+++++++.+++. +.| ++++++.||+||+++++..++. .++|.| .|+++++|+|+
T Consensus 228 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~ 302 (369)
T 3hgu_A 228 QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDS 302 (369)
T ss_dssp HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECT
T ss_pred cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECC
Confidence 5678999999999999999999999 899 8999999999999876643321 158898 99999999998
Q ss_pred -CCCCCCCc-cceEEEeCc---chhhhhcCCCcccchh-hcccC
Q 015313 372 -ESGSDAAG-VGEICVKSP---SLFKEYWKLPKESRTL-SSCLY 409 (409)
Q Consensus 372 -~~~~~~~~-~Gel~v~g~---~~~~gY~~~~~~t~~~-~~g~~ 409 (409)
++++++.| .|||+|++. .++.+|+..+.+++.. .+||+
T Consensus 303 ~~g~~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~ 346 (369)
T 3hgu_A 303 ITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFA 346 (369)
T ss_dssp TTCSBCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCS
T ss_pred CCCcCCCCCCceEEEEEEcCcccccccccCCceEEEecCCCCCc
Confidence 78999888 899999973 3467899988888876 78875
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=7.8e-31 Score=244.20 Aligned_cols=199 Identities=18% Similarity=0.239 Sum_probs=169.9
Q ss_pred CCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcch
Q 015313 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248 (409)
Q Consensus 169 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~ 248 (409)
.+++++|+|||||||.||+|.+||+++.+.+......++++++|++++.+|++|.+|+.. ++.++..|+++++.+...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~~- 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPTA- 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCCS-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCccc-
Confidence 378999999999999999999999999999999999999999999999999999999864 788899999999886521
Q ss_pred HHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHHhC
Q 015313 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~ 328 (409)
+.++. ++++++|++.++|+++..+++... ...++++||.+++||+++++++.+++.+ ++
T Consensus 114 -~~~~~----------i~~~~~t~~~~~P~~l~~ll~~~~---------~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~ 172 (358)
T 4gs5_A 114 -NPLAG----------LDHADFDFVAMVPMQLQSILENSA---------TSGQVDRLGKVLLGGAPVNHALAMQISD-LA 172 (358)
T ss_dssp -CTTTT----------CSSCCCSEEEECHHHHHHHHHCTT---------TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS
T ss_pred -cHHHH----------HHHhCCeEEEcChHHHHHhhcccc---------ccccCCcceEEEEcccCCCchheecccc-cC
Confidence 22233 889999999999999999987522 3346899999999999999999999876 48
Q ss_pred CccccccccccccccccccCCCCCCccccccccCCeEEEEeeCCCCCCCCccceEEEeCcchhhhhcCCCc
Q 015313 329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPK 399 (409)
Q Consensus 329 ~~v~~~YG~tE~g~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~~~~~~~~~Gel~v~g~~~~~gY~~~~~ 399 (409)
+++++.||+||+++.+..........+++|.+.|++++++.+. |||+++|+....|||+--+
T Consensus 173 ~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~~---------Gel~~~g~~~~~g~~~TGD 234 (358)
T 4gs5_A 173 MPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDER---------GCLHISGAVTNGQTVQTND 234 (358)
T ss_dssp SCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECTT---------SEEEEESGGGTTCCEEEEE
T ss_pred ceEEeccccccccceeecccccccccceeeccCCCeEEEecCc---------CceEEecccccCcceecCC
Confidence 9999999999998766654444556788999999999998664 9999999988888876333
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.96 E-value=1.7e-29 Score=242.14 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=166.8
Q ss_pred CCcEEEEecCCCCCCCceeeechHHHHHHHHHHH---hhcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCc
Q 015313 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246 (409)
Q Consensus 170 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~ 246 (409)
+++++++|||||||.||+|.++|+++........ ...++.++|+++...|+.|..+.+..++.++..|+++++.+..
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 7889999999999999999999999987766653 3447889999999999987777766688899999999999988
Q ss_pred chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHHHHHH
Q 015313 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETI 326 (409)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~ 326 (409)
++..+++. ++++++|+++++|+++..|++..+... ....++++|.+++||+++++++.+++.+.
T Consensus 166 ~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 229 (436)
T 3qov_A 166 NSKRQIKF----------ISDFKTTALHAIPSYAIRLAEVFQEEG------IDPRETTLKTLVIGAEPHTDEQRRKIERM 229 (436)
T ss_dssp CHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHHHTT------CCTTSSSCCEEEEESSCCCHHHHHHHHHH
T ss_pred CHHHHHHH----------HHHHCCCEEEECHHHHHHHHHHHHHcC------CCcccCCccEEEEeCCcCCHHHHHHHHHH
Confidence 99999888 777999999999999999988643211 11136899999999999999999999999
Q ss_pred hCCcccccccccccccc-ccccCCCCCCccccccccCCeEEEEee-CCCCCCCCc-cceEEEeCc
Q 015313 327 TGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSP 388 (409)
Q Consensus 327 ~~~~v~~~YG~tE~g~~-~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~~~~~~~~-~Gel~v~g~ 388 (409)
||+++++.||+||+++. +..... .....|.|.++++++|+| +++++++.| .|||+|+|.
T Consensus 230 ~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~ 291 (436)
T 3qov_A 230 LNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL 291 (436)
T ss_dssp HTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES
T ss_pred hCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc
Confidence 99999999999999544 322211 122366777899999999 678889888 899999985
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.96 E-value=5.1e-28 Score=231.95 Aligned_cols=202 Identities=19% Similarity=0.115 Sum_probs=163.6
Q ss_pred CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHH---hhcccCCCCeEEEecCc-hhHHHHHHHHHHHHhcCCEEEE
Q 015313 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (409)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~~l~~G~~i~~ 242 (409)
..++++++++|||||||.||+|.++|+++........ ..++++++|+++..+|+ .|..++. ..+.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEEe
Confidence 3567899999999999999999999999887665443 35678899999999998 5666664 47888999999999
Q ss_pred ccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHH
Q 015313 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (409)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~ 322 (409)
.+.+++..+++. ++++++|+++++|+++..|++..+... ....++++|.+++||+++++++.++
T Consensus 166 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~ 229 (437)
T 2y27_A 166 FGGGQTEKQVQL----------IQDFRPDIIMVTPSYMLSIADEIERQG------LDPVQSSLRIGIFGAEPWTNDMRVA 229 (437)
T ss_dssp CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcC------CCcccCCeeEEEEcCccCCHHHHHH
Confidence 988899999888 777999999999999999987643211 0113578999999999999999999
Q ss_pred HHHHhCCccccccccccccc--cccccCCCCCCccccccccCCeEEEEeeCC-CCCCCCc-cceEEEeCc
Q 015313 323 WETITGHRLLERYGMTEFVM--AISNPLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSP 388 (409)
Q Consensus 323 ~~~~~~~~v~~~YG~tE~g~--~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~-~~~~~~~-~Gel~v~g~ 388 (409)
+.+.+|+++++.||+||+++ +...+.. .....+.|.+++.++|+|++ +++++.| .|||+++|.
T Consensus 230 ~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~ 296 (437)
T 2y27_A 230 IEQRMGIDAVDIYGLSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL 296 (437)
T ss_dssp HHHHHTSEEEEEEEETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES
T ss_pred HHHHHCcCEEecCCchhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC
Confidence 99999999999999999843 3333322 11125567789999999954 8888888 899999984
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.95 E-value=6.2e-28 Score=231.79 Aligned_cols=202 Identities=19% Similarity=0.131 Sum_probs=163.2
Q ss_pred CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh---hcccCCCCeEEEecCch-hHHHHHHHHHHHHhcCCEEEE
Q 015313 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH-HVHGLFNALLAPLYAGATVEF 242 (409)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~-~~~g~~~~~~~~l~~G~~i~~ 242 (409)
..++++++++|||||||.||+|.++|+++......... .+++.++|+++...|++ |..++ ...+.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEE
Confidence 35688999999999999999999999998876655433 56788999999999995 55555 457888999999999
Q ss_pred ccCcchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHHhhhhhhHHHHHHhhhhhccceEEEeeCCCCCHHHHHH
Q 015313 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (409)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~ 322 (409)
.+.+++..+++. ++++++|+++++|+++..|++..+... ....++++|.+++||+++++++.++
T Consensus 168 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~ 231 (443)
T 2y4o_A 168 MSGGQTEKQVQL----------IRDFEPKIILVTPSYMLNLIDEMVRQG------MDPAESSLKIGIFGAEPWTQALRNE 231 (443)
T ss_dssp CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHhCCcEEEECHHHHHHHHHHHHHcC------CCcccCCceEEEECCCcCCHHHHHH
Confidence 998899999888 777999999999999999987633211 0113589999999999999999999
Q ss_pred HHHHhCCccccccccccccc--cccccCCCCCCccccccccCCeEEEEeeC-CCCCCCCc-cceEEEeCc
Q 015313 323 WETITGHRLLERYGMTEFVM--AISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEICVKSP 388 (409)
Q Consensus 323 ~~~~~~~~v~~~YG~tE~g~--~~~~~~~~~~~~~~~G~p~~~~~~~ivd~-~~~~~~~~-~Gel~v~g~ 388 (409)
+.+.+|+++++.||+||+++ +...+.. .....+.|.+++.++|+|+ ++++++.| .|||+|+|.
T Consensus 232 ~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~ 298 (443)
T 2y4o_A 232 VETRVGIDALDIYGLSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL 298 (443)
T ss_dssp HHHHHTCEEEEEEEETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES
T ss_pred HHHHhCcCEEeccCchhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC
Confidence 99999999999999999743 3333221 1112455678999999995 58888888 899999984
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=94.37 E-value=0.69 Score=44.77 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCCCCcEEEEecCCCC-CCCceeeechHHHHH
Q 015313 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (409)
Q Consensus 167 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~ 197 (409)
..++.+.+...||||| |.+|-+++|...+-.
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 4567788999999999 779999999997754
No 38
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=93.37 E-value=0.31 Score=47.16 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.4
Q ss_pred CCCCCcEEEEecCCCC-CCCceeeechHHHHH
Q 015313 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (409)
Q Consensus 167 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~ 197 (409)
..++.+.++..||||| |.+|-+++|...+-.
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 4456788999999999 779999999997765
No 39
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.23 E-value=1.2 Score=41.52 Aligned_cols=90 Identities=10% Similarity=0.142 Sum_probs=71.8
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC--CHHHHHHHHHHHhhCcEEEeCCCCC
Q 015313 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (409)
Q Consensus 25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~--~~~~~~~~~A~~~~G~~~~~i~~~~ 102 (409)
-.+|.+.+...+..++..+.. +++.++|++....+. +...+...++++..|+.+++++..
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~- 169 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRA-----------------AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG- 169 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-
Confidence 368999998888887777766 488999999998885 344455678888999999887654
Q ss_pred ChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 103 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
+.+.+...+++.++.+++..+..+..+.+.
T Consensus 170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADE 199 (437)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 778888999999999999999887766554
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=92.08 E-value=0.61 Score=45.35 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=26.7
Q ss_pred CCCCCcEEEEecCCCC-CCCceeeechHHHHH
Q 015313 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (409)
Q Consensus 167 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~ 197 (409)
..++.+.++..||||| |+||.+.+|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 4567788999999999 789999999998765
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.98 E-value=1.3 Score=41.32 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=72.1
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC--HHHHHHHHHHHhhCcEEEeCCCCC
Q 015313 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY 102 (409)
Q Consensus 25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~--~~~~~~~~A~~~~G~~~~~i~~~~ 102 (409)
-.+|.+.+...+..++..+.. +++.++|++....+.+ ...+...++++..|+.+++++..
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~- 171 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRA-----------------AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG- 171 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-
Confidence 368999998888888877766 4889999999988853 44455678888999999888665
Q ss_pred ChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 103 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
+.+.+...+++.++.+++..+..+..+.+.
T Consensus 172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 172 QTEKQVQLIRDFEPKIILVTPSYMLNLIDE 201 (443)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence 778888899999999999998877666553
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.69 E-value=1.4 Score=41.06 Aligned_cols=90 Identities=17% Similarity=0.066 Sum_probs=73.0
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC--CHHHHHHHHHHHhhCcEEEeCCCCC
Q 015313 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (409)
Q Consensus 25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~--~~~~~~~~~A~~~~G~~~~~i~~~~ 102 (409)
-.+|.+.+...+..++..+.. +++.++|++....+- ....+...++++..|+.+++.+..
T Consensus 104 v~~th~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~- 165 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYM-----------------VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG- 165 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EEECHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence 368999999888888888877 488999999998874 344555678889999999887654
Q ss_pred ChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 103 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
+.+.+...+++.++.+++..+..+..+.+.
T Consensus 166 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 195 (436)
T 3qov_A 166 NSKRQIKFISDFKTTALHAIPSYAIRLAEV 195 (436)
T ss_dssp CHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence 677888899999999999999887766554
No 43
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=87.51 E-value=6.2 Score=37.37 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=73.2
Q ss_pred CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH-HHHH
Q 015313 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFVA 83 (409)
Q Consensus 14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~-~~~~ 83 (409)
.++.+|++. ++-.+|.+.+...+..+...+ ++.++|++...+|-.. -.+.
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL--------------------GFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT--------------------CCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh--------------------CCCccCEEEEeCcHHHHHHHH
Confidence 456777664 124789988887776655443 7788999998888653 3334
Q ss_pred HHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 84 ~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
.+++++..|+.++..+. .+++.+...+++.++.++...+..+..+...
T Consensus 221 ~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 268 (501)
T 3ipl_A 221 VLLRAVIEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQ 268 (501)
T ss_dssp HHHHHHHHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence 46778888998888764 6788899999999999999999887766554
No 44
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=82.85 E-value=10 Score=36.33 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=71.0
Q ss_pred CCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH--HH
Q 015313 15 RDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--VA 83 (409)
Q Consensus 15 ~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~--~~ 83 (409)
|+.+|++. ++-.+|.+.+...+......+ ++.++|++...+|-+..+ ..
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~~ 240 (539)
T 1mdb_A 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--------------------WLDHSTVYLAALPMAHNYPLSS 240 (539)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHHS
T ss_pred cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh--------------------CCCCCCEEEEeecccccchhhH
Confidence 45666654 124789988877766655443 778899998888865333 22
Q ss_pred -HHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 84 -GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 84 -~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
.+++.+..|+.++..+. .+++.+...+++.++.++...+..+..+...
T Consensus 241 ~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (539)
T 1mdb_A 241 PGVLGVLYAGGRVVLSPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDA 289 (539)
T ss_dssp SHHHHHHHTTCEEEECSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEECCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhC
Confidence 47888889998887654 5788888999999999999998877766543
No 45
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=82.44 E-value=9.7 Score=36.58 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=70.0
Q ss_pred CeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH--HHH
Q 015313 16 DSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--VAG 84 (409)
Q Consensus 16 ~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~--~~~ 84 (409)
+.+|++. ++-.+|.+.+...+......+.. .++.++|++....|-+..+ ...
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~~h~~g~~~~ 254 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-----------------NQVSPGTAVLTVVPFHHGFGMFTT 254 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHH
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-----------------cCCCccceEEEeccHHHHHHHHHH
Confidence 6677765 23478998887776655443322 3778899998888865333 233
Q ss_pred HHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 85 ~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
+++.+ .|+.++..+ ..+++.+...+++.++.+++..+..+..+..
T Consensus 255 ~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 255 LGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp HHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred HHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 56666 999888775 4678889999999999999999987776654
No 46
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=81.85 E-value=12 Score=35.89 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=71.7
Q ss_pred CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHH-
Q 015313 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA- 83 (409)
Q Consensus 14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~- 83 (409)
.++.+|++. ++-.+|.+.+...+...+..+ ++.++|++...+|-+..+-.
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~ 248 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--------------------GLNSNTRLLCALPAPHNFMLS 248 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh--------------------CCCCCCeEEEecCcceEeecc
Confidence 356667664 124789998887777665543 77889999988886543332
Q ss_pred --HHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 84 --GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 84 --~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
.+++.+..|+.++..+. .++..+...+++.++.++...+..+..+...
T Consensus 249 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 249 SPGALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp SSHHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred hHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence 36788888998887754 4777788899999999999998877665443
No 47
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=81.49 E-value=4.9 Score=36.27 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=65.2
Q ss_pred cCCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH-HHH
Q 015313 13 MARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFV 82 (409)
Q Consensus 13 ~~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~-~~~ 82 (409)
.+.|.+|++. ++-.+|.+.+...+..++..+ ++.++|++...+|-+. -.+
T Consensus 34 w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~pl~h~~gl 93 (358)
T 4gs5_A 34 WLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL--------------------SLGPGTRALVCLNVGYIAGL 93 (358)
T ss_dssp HHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHH
T ss_pred cCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh--------------------CCCCCCEEEEECChHHHHHH
Confidence 3456677764 234799999887776665544 7889999999888653 233
Q ss_pred HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
..++..+..|+..+..++... ....+++.++.++...+..+..+.+
T Consensus 94 ~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~ 139 (358)
T 4gs5_A 94 MMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILE 139 (358)
T ss_dssp HHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhc
Confidence 445566677777766655432 2346788999999998877665543
No 48
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=80.68 E-value=6.8 Score=35.36 Aligned_cols=86 Identities=8% Similarity=-0.068 Sum_probs=61.9
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCC--CHHHHHHHHHHHhhCcEEEeCCCCC
Q 015313 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (409)
Q Consensus 25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~--~~~~~~~~~A~~~~G~~~~~i~~~~ 102 (409)
-.+|.+.+...+..++..+.. .|+.++|++....+- +.--....+++...|+.+++.. .
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~ 169 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQH-----------------RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--I 169 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTT-----------------STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--C
T ss_pred EEECHHHHHHHHHHHHhhHHh-----------------hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--C
Confidence 467888888888777666665 488999999999886 2233344455588898655543 3
Q ss_pred ChH-----------------------HHHHHHhcCCceEEEechhHHHHH
Q 015313 103 PES-----------------------ELLHVMHDSDISMVLSTEDYREVL 129 (409)
Q Consensus 103 ~~~-----------------------~~~~~l~~~~~~~vi~~~~~~~~~ 129 (409)
++. .+...+++.++.+++..+..+..+
T Consensus 170 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 170 DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 444 566688999999999998776554
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=78.40 E-value=17 Score=34.55 Aligned_cols=95 Identities=6% Similarity=0.057 Sum_probs=68.7
Q ss_pred CCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHH--
Q 015313 15 RDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA-- 83 (409)
Q Consensus 15 ~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~-- 83 (409)
|+.+|++. ++-.+|.+.+...+...+..+ ++.++|++...+|-...+-.
T Consensus 169 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 169 GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI--------------------DVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS--------------------CCCTTCEEEECSCTTSHHHHHH
T ss_pred CCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc--------------------CCCCCCEEEEeCchHHHHHHHH
Confidence 46666654 124789988887776665544 77889999998886643332
Q ss_pred HHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 84 ~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
.+++++ .|+..+..+ ..++..+...+++.++.++...+..+..+..
T Consensus 229 ~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 229 VIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp HHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred HHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 244444 888888775 4688888899999999999999987776654
No 50
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=75.96 E-value=29 Score=33.79 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=70.9
Q ss_pred CCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH--HH
Q 015313 15 RDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--VA 83 (409)
Q Consensus 15 ~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~--~~ 83 (409)
++.+|++. ++-.+|.+.+...+......+ ++.+++++....|-+..+ ..
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~~~~l~~~p~~~~~~~~~ 242 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC--------------------QFTQQTRYLCAIPAAHNYAMSS 242 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHHS
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc--------------------CCCCcceEEEeccchhhhhhhH
Confidence 46666654 234789988887776665544 778899999988855333 32
Q ss_pred -HHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 84 -GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 84 -~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
..++++..|+.++..+. .+...+...+++.++.++...+..+..+...
T Consensus 243 ~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 243 PGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp SHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence 46788888988887654 4677788889999999999998877665543
No 51
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=75.81 E-value=26 Score=33.50 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc
Q 015313 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (409)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~ 244 (409)
.++.++++....+.. .-..-.+|++.+...+..+...+ +..++|++...++-+.- ++..+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFP-SEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCC-CSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCccc-ccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEccC
Confidence 356677665432111 11235789999988777765544 67899999999887643 3456899999999999998
Q ss_pred Ccc-hHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHH
Q 015313 245 KFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (409)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~ 285 (409)
... .+.+... ++..+++.++..+.....+..
T Consensus 109 ~~~~~~~l~~i----------l~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHI----------LNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHH----------HHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHH----------HHhcCCCEEEEChHHHHHHHH
Confidence 644 4444444 555788889888877766544
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=74.61 E-value=9.5 Score=36.19 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=69.9
Q ss_pred CCCeeEEEe--C-------CccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH-HHH
Q 015313 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE-FVA 83 (409)
Q Consensus 14 ~~~~~a~~~--~-------~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~-~~~ 83 (409)
.++.+|++. . +-.+|.+.+...+......+ ++.++|++....|-+.. .+.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~~~~ 201 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF--------------------NLQTGQVFLNQAPFSFDLSVM 201 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT--------------------TCCSSCEEEECSCTTSGGGHH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc--------------------CCCCCCEEEEeCCccHhHHHH
Confidence 346666654 1 24789888887766555443 77889999999886533 234
Q ss_pred HHHHHHhhCcEEEeCCCC--CChHHHHHHHhcCCceEEEechhHHHHH
Q 015313 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVL 129 (409)
Q Consensus 84 ~~~A~~~~G~~~~~i~~~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 129 (409)
..++.+..|+.++.++.. .++..+...+++.++.++...+..+..+
T Consensus 202 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 202 DIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 577888899998887653 4677788889999999999998776554
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=74.47 E-value=10 Score=36.73 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=70.6
Q ss_pred CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHHHH-
Q 015313 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA- 83 (409)
Q Consensus 14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~~~- 83 (409)
.|+.+|++. ++-.+|.+.+...+......+ ++.++|++...+|-+..+-.
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~g~~ 224 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF--------------------HMNDETIIFSWLPPHHDMGLI 224 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh--------------------CCCCcCeEEEecCCCcchhhH
Confidence 356666664 124789999988877665543 77889999999987754433
Q ss_pred -HHHHHHhhCcEEEeCCCCC---ChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 84 -GVLGTWFSGCIAVPLALSY---PESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 84 -~~~A~~~~G~~~~~i~~~~---~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
.+++.+..|+.++..++.. ++..+...+++.++.++...+..+..+..
T Consensus 225 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 225 GCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp TTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred HHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 3688888999988876532 56667788889999988887766665544
No 54
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=74.11 E-value=19 Score=34.50 Aligned_cols=89 Identities=12% Similarity=-0.004 Sum_probs=65.4
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH-HHHHHHHHHHhhCcEEEeCCCCCC
Q 015313 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFVAGVLGTWFSGCIAVPLALSYP 103 (409)
Q Consensus 25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~-~~~~~~~A~~~~G~~~~~i~~~~~ 103 (409)
-.+|.+.+...+......+.. .++.+++++...+|-+. -.+...++.+..|+.++.++ ..+
T Consensus 208 V~~th~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~ 269 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFG-----------------NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFE 269 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCC
T ss_pred hhhhHHHHHHHHHHhhhhhcc-----------------ccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCC
Confidence 478888877665554433332 37788999998888653 23345667788899888775 467
Q ss_pred hHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 104 ESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 104 ~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
++.+...+++.++.+++..+..+..+..
T Consensus 270 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (550)
T 3rix_A 270 EELFLRSLQDYKIQSALLVPTLFSFFAK 297 (550)
T ss_dssp HHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence 8888899999999999999887776654
No 55
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=73.98 E-value=26 Score=33.09 Aligned_cols=85 Identities=5% Similarity=-0.082 Sum_probs=60.0
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH-HHHHHH-HHhhCcEEEeCCCCC
Q 015313 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-VAGVLG-TWFSGCIAVPLALSY 102 (409)
Q Consensus 25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~-~~~~~A-~~~~G~~~~~i~~~~ 102 (409)
-.+|.+.+...+......+ ++.++|++...+|-...+ +...+. .+..|+.+++. ..
T Consensus 178 V~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~--~~ 235 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVDAW--------------------RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA--KF 235 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS--SC
T ss_pred EEEehHHHHHHHHHHHHhh--------------------CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec--cc
Confidence 4789988887776665543 778899999988865332 223333 44445554443 66
Q ss_pred ChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 103 PESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 103 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
+++.+...+++.++.++...+..+..+..
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 264 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILD 264 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHH
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHh
Confidence 88889999999999999988877766544
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=72.90 E-value=9.8 Score=36.10 Aligned_cols=86 Identities=17% Similarity=0.056 Sum_probs=64.5
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH-HHHHHHHHHhhCcEEEeCCCC--
Q 015313 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE-FVAGVLGTWFSGCIAVPLALS-- 101 (409)
Q Consensus 25 ~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~-~~~~~~A~~~~G~~~~~i~~~-- 101 (409)
-.+|.+.+...+..+...+ ++.++|++....|-+.. .+..+++++..|+.++.++..
T Consensus 161 V~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~ 220 (511)
T 3e7w_A 161 VQISAANLQSFTDWICADF--------------------PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAV 220 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHS--------------------TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHH
T ss_pred EEEcHHHHHHHHHHHHHhc--------------------CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhh
Confidence 4788888877766655443 77889999998886633 334577888899988877543
Q ss_pred CChHHHHHHHhcCCceEEEechhHHHHHH
Q 015313 102 YPESELLHVMHDSDISMVLSTEDYREVLQ 130 (409)
Q Consensus 102 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (409)
.++..+...+++.++.+++..+..+..+.
T Consensus 221 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 249 (511)
T 3e7w_A 221 NKPKVLFEELKKSGLNVWTSTPSFVQMCL 249 (511)
T ss_dssp HSHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 46677888899999999999988776544
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=72.37 E-value=14 Score=35.04 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=70.0
Q ss_pred CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccC--CCCCEEEEEeCCCHHHH
Q 015313 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG--GCGARIGIVAKPSFEFV 82 (409)
Q Consensus 14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~--~~g~~V~l~~~~~~~~~ 82 (409)
.|+.+|++. ++-.+|.+.+...+..+... +++ .++|++...+|-...+-
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~p~~~~~g 210 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQ--------------------VGLRHGRHNVVLGLMPLYHVVG 210 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHT--------------------TCCCSSTTCEEEECSCTTSHHH
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHh--------------------hCCCCCCCceEEeecchhhcch
Confidence 356667654 12367888777666554432 355 77898888888654332
Q ss_pred --HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 83 --AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 83 --~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
..+++.+..|+.++..+. .++..+...+++.++.+++..+..+..+...
T Consensus 211 ~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 261 (504)
T 1t5h_X 211 FFAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAA 261 (504)
T ss_dssp HTTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhh
Confidence 346788889998888764 5778888899999999999999887776554
No 58
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=71.62 E-value=22 Score=33.93 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh---cccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc
Q 015313 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (409)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~ 244 (409)
.++.++++.. .+| -.+|++.+...+..+... .+..++|++...++-+.- ++..+++++..|+..+.++
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEeccC
Confidence 4566766542 222 368999998877766554 477899999999887643 3456889999999999988
Q ss_pred Ccc-hHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHH
Q 015313 245 KFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (409)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~ 285 (409)
... .+.+... ++..++..++..+.....+..
T Consensus 106 ~~~~~~~l~~~----------l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 106 PFSTPAELAKH----------AKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TTCCHHHHHHH----------HHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCHHHHHHH----------HHhcCCEEEEEChHHHHHHHH
Confidence 644 4444444 555788888888776655543
No 59
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=71.38 E-value=19 Score=34.41 Aligned_cols=70 Identities=9% Similarity=-0.063 Sum_probs=54.6
Q ss_pred ccCCCCCEEEEEeCCCHHH-HHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 63 LAGGCGARIGIVAKPSFEF-VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~-~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
+++.++|++...+|-.-.+ ....++++..|+..+..+...+++.+...+++.++.++...+..+..+.+.
T Consensus 214 ~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 284 (541)
T 1v25_A 214 TALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY 284 (541)
T ss_dssp TCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred ccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhh
Confidence 4788899999888864322 234567788899888877667889999999999999999998877666543
No 60
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=66.35 E-value=39 Score=31.43 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc
Q 015313 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (409)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~ 244 (409)
.++.++++.........-....+|++.+...+..+...+ +. ++|++...++-+.- ++..+++++..|+..+.++
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~ 113 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE--YVVAFLGALQAGRIAVPLS 113 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEEC
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEeeC
Confidence 467777766542211112346899999998888776655 33 78999888877643 3456889999999999886
Q ss_pred C----cchHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHHH
Q 015313 245 K----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (409)
Q Consensus 245 ~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~ 285 (409)
. ...+.+... ++..++..++..+.....+.+
T Consensus 114 ~~~~~~~~~~l~~i----------l~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 114 VPQGGVTDERSDSV----------LSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp SCCSCTTCCHHHHH----------HHHHCCSEEEECTTTHHHHHH
T ss_pred CCCccchHHHHHHH----------HHhCCCCEEEeChhHHHHHHH
Confidence 4 234455444 455688888888877766654
No 61
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=63.11 E-value=27 Score=32.97 Aligned_cols=81 Identities=9% Similarity=-0.057 Sum_probs=59.6
Q ss_pred eechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcc-hHHHHHHHHhhcCCCCC
Q 015313 189 VHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGN 264 (409)
Q Consensus 189 ~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~-~~~~~~~~~~~~~~~~~ 264 (409)
.+|++.+...+..+...+ +..++|++...++-+.- ++..+++++..|+..+.++... .+.+...
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~i---------- 95 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYF---------- 95 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHH----------
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHH----------
Confidence 689999988777765544 77889999999887643 3456899999999999998644 4444444
Q ss_pred CccccceeeecchHHHH
Q 015313 265 RAGEAITAFTGVPTMYT 281 (409)
Q Consensus 265 i~~~~vt~~~~~P~~l~ 281 (409)
++..+++.++..+....
T Consensus 96 l~~~~~~~vi~~~~~~~ 112 (503)
T 4fuq_A 96 ITDAEPKIVVCDPSKRD 112 (503)
T ss_dssp HHHHCCSEEEECGGGTT
T ss_pred HHhcCCcEEEECchhhH
Confidence 55568888887765543
No 62
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=60.57 E-value=41 Score=31.69 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=67.6
Q ss_pred CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH--HH
Q 015313 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE--FV 82 (409)
Q Consensus 14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~--~~ 82 (409)
.++.+|++. ++-.+|.+.+...+..+...+ ++.++|++...+|-.-. ++
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~~ 212 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW--------------------QWTGEDVLVQGLPLFHVHGLV 212 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECCCTTSHHHHT
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh--------------------CCCCCcEEEEeccHHHHHHHH
Confidence 355666654 124789999888887766655 67889988887775422 23
Q ss_pred HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
..+++.+..|+.++..+. .+.+.+...+ +.++.+++..+..+..+..
T Consensus 213 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 213 LGILGPLRRGGSVRHLGR-FSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp TTTHHHHHHTCEEEECSS-CCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCC-CChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 357888899998887754 5666666666 6789999988877765544
No 63
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=60.40 E-value=52 Score=31.51 Aligned_cols=82 Identities=12% Similarity=-0.036 Sum_probs=59.1
Q ss_pred eeechHHHHHHHHHHHhh---cccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcc-hHHHHHHHHhhcCCCC
Q 015313 188 VVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNG 263 (409)
Q Consensus 188 v~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~-~~~~~~~~~~~~~~~~ 263 (409)
-.+|++.+...+..+... .+..++|++...++-+.- ++..+++++..|+..+.++... .+.+...
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~i--------- 131 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPIDIEYPKERIQYI--------- 131 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHH---------
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEeCCCCcHHHHHHH---------
Confidence 368999998777766554 377889999988887643 3456889999999999988644 4444444
Q ss_pred CCccccceeeecchHHHH
Q 015313 264 NRAGEAITAFTGVPTMYT 281 (409)
Q Consensus 264 ~i~~~~vt~~~~~P~~l~ 281 (409)
++..++..++..+....
T Consensus 132 -l~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 132 -LDDSQARMLLTQKHLVH 148 (563)
T ss_dssp -HHHHTCSEEEECGGGHH
T ss_pred -HHhcCCCEEEEcCchhh
Confidence 45567788877765544
No 64
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=59.60 E-value=32 Score=32.97 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=68.5
Q ss_pred CCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHH--HHH
Q 015313 15 RDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE--FVA 83 (409)
Q Consensus 15 ~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~--~~~ 83 (409)
|+.+|++. ++-.+|.+.+...+..+... . .++.++|++...+|-... +..
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~-----------------~~~~~~d~~l~~~p~~h~~g~~~ 235 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--G-----------------IKLRPGDRCVSWLPFYHDMGLVG 235 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--T-----------------SCCCTTCCEEECCCTTSHHHHHH
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--c-----------------cCCCCcceEEEcCCccccccHHH
Confidence 56777765 23478998887666554332 1 378899999998887644 334
Q ss_pred HHHHHHhhCcEEEeCCC---CCChHHHHHHHhcCCceEEEechhHHHHHH
Q 015313 84 GVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQ 130 (409)
Q Consensus 84 ~~~A~~~~G~~~~~i~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (409)
.+++.+..|+.++.+.+ ..++..+...+++.++.+++..+..+..+.
T Consensus 236 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 285 (576)
T 3gqw_A 236 FLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQ 285 (576)
T ss_dssp HTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred HHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHH
Confidence 56777888888777654 235667888899999999999887766554
No 65
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=59.31 E-value=37 Score=32.20 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=62.0
Q ss_pred eeechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCc-chHHHHHHHHhhcCCCC
Q 015313 188 VVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF-SVRGIWQRWRESYPVNG 263 (409)
Q Consensus 188 v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~-~~~~~~~~~~~~~~~~~ 263 (409)
..+|++.+...+..+...+ +..++|++...++-+.- ++..+++++..|+..+.++.. ..+.+...
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~--------- 115 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVANTLLTPADYVYM--------- 115 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHH---------
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEecCcccCHHHHHHH---------
Confidence 3689999988777765544 67889999999887643 345688999999999988764 45555555
Q ss_pred CCccccceeeecchHHHHHHH
Q 015313 264 NRAGEAITAFTGVPTMYTRLI 284 (409)
Q Consensus 264 ~i~~~~vt~~~~~P~~l~~l~ 284 (409)
++..++..++..+.....+.
T Consensus 116 -l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 116 -LTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp -HHHHTCSEEEEEGGGHHHHH
T ss_pred -HhccCCeEEEechhhhhHHH
Confidence 55568888888877665443
No 66
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=58.16 E-value=36 Score=35.33 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=70.8
Q ss_pred CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCH--HHH
Q 015313 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFV 82 (409)
Q Consensus 14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~--~~~ 82 (409)
.|+.+|++. ++-.+|.+.+...+.......... +++.++|++....|-.- .+.
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~----------------~~~~~~d~~l~~~p~~h~~~~~ 286 (979)
T 3tsy_A 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPN----------------LYFHSDDVILCVLPMFHIYALN 286 (979)
T ss_dssp CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCS----------------SCCCSSCEEEECSCSSSHHHHH
T ss_pred CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhccc----------------ccCCCCCEEEEECchHHHHHHH
Confidence 467777764 234788888877655443322222 57889999998888653 333
Q ss_pred HHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 83 ~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
..++..+..|+..+..+ ....+.+...+++.++.++...+..+..+..
T Consensus 287 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 334 (979)
T 3tsy_A 287 SIMLCGLRVGAAILIMP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAK 334 (979)
T ss_dssp HTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred HHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHh
Confidence 45677888999888775 4577888889999999999988876665543
No 67
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=57.99 E-value=80 Score=27.89 Aligned_cols=60 Identities=10% Similarity=-0.109 Sum_probs=43.8
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechh
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~ 124 (409)
+++|+.|.+....+-.-..+.+++...|.-++.+-|...+......++..++++++++..
T Consensus 68 l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 68 LIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 478888766666677788888888888986655534334444566788999999999764
No 68
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=57.76 E-value=50 Score=31.82 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc
Q 015313 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (409)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~ 244 (409)
.++.++++..... | ....+|++.+......+...+ +..++|++...++-+.- ++..+++++..|+..+.++
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeCC
Confidence 4677887765331 2 246789999988777665544 78899999999887643 3556899999999999887
Q ss_pred Cc-chHHHHHHHHhhcCCCCCCccccceeeecchH
Q 015313 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278 (409)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 278 (409)
.. ..+.+... ++..++..+++.+.
T Consensus 143 ~~~~~~~l~~~----------l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 143 HMLKTRDIVYR----------IEKAGLKMIVCIAE 167 (580)
T ss_dssp TTCCHHHHHHH----------HHHHTCCEEEEESS
T ss_pred ccCCHHHHHHH----------HHhcCCCEEEEecc
Confidence 64 45555555 45567888877554
No 69
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=56.17 E-value=44 Score=32.12 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=69.5
Q ss_pred CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhhc----ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEc
Q 015313 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (409)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~----~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~ 243 (409)
.++.++++.... .| ....+|++.+...+..+...+ +..++|++...++-+.- ++..+++++..|+..+.+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE--WWLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEec
Confidence 456777665421 12 235789999988777665543 67789999999887643 345688999999999998
Q ss_pred cCc-chHHHHHHHHhhcCCCCCCccccceeeecchHHHHHHH
Q 015313 244 PKF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (409)
Q Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~ 284 (409)
+.. ..+.+... ++..++..++..+.....+.
T Consensus 130 ~~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 130 TIQMKSTDILYR----------LQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp CTTCCHHHHHHH----------HHHHTCSEEEEETTTHHHHH
T ss_pred CCCCCHHHHHHH----------HHhcCCeEEEechHHHHHHH
Confidence 864 44554444 55568888888777665543
No 70
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=54.62 E-value=38 Score=33.23 Aligned_cols=70 Identities=9% Similarity=0.025 Sum_probs=53.4
Q ss_pred ccCCCCCEEEEEeCCCHHHH--HHHHHHHhhCcEEEeCCCC---CChHHHHHHHhcCCceEEEechhHHHHHHHH
Q 015313 63 LAGGCGARIGIVAKPSFEFV--AGVLGTWFSGCIAVPLALS---YPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~--~~~~A~~~~G~~~~~i~~~---~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (409)
.+++++|++....+-+...- ..+++.+..|+..+..+.. .++..+-.++++.++.++.+.+..+..+...
T Consensus 293 ~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 367 (652)
T 1pg4_A 293 FDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367 (652)
T ss_dssp TTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTT
T ss_pred cCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence 37888999988887664433 3457888999988877542 4677888999999999999999887766543
No 71
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=54.18 E-value=37 Score=33.08 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=53.6
Q ss_pred ccCCCCCEEEEEeCCCHHH-HHHHHHHHhhCcEEEeCC-CCCChHHHHHHHhcCCceEEEechhHHHHHHH
Q 015313 63 LAGGCGARIGIVAKPSFEF-VAGVLGTWFSGCIAVPLA-LSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~-~~~~~A~~~~G~~~~~i~-~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (409)
.++.++|++....+-+.+. +..++..+..|+.++..+ ...+++.+...+++.++.++...+..+..+.+
T Consensus 199 ~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 269 (620)
T 4dg8_A 199 LAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD 269 (620)
T ss_dssp GTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHH
T ss_pred hCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHh
Confidence 5889999999999876443 344677888888877663 35678889999999999999998877766544
No 72
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=53.17 E-value=57 Score=30.72 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=68.3
Q ss_pred CCCeeEEEe---------CCccccHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCCHHH-HH
Q 015313 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-VA 83 (409)
Q Consensus 14 ~~~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~~~~-~~ 83 (409)
.++.+|++. ++-.+|.+.+...+..+..... .++..++++....+-+... +.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAA------------------FDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTT------------------TCCCSSCEEECCSCTTSGGGHH
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccc------------------cCCCCCCeEEecCCccHHHHHH
Confidence 346666654 2247899888776554443221 3677888888877765433 44
Q ss_pred HHHHHHhhCcEEEeCCCC--CChHHHHHHHhcCCceEEEechhHHHHHH
Q 015313 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVLQ 130 (409)
Q Consensus 84 ~~~A~~~~G~~~~~i~~~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (409)
.+++++..|+..+..+.. .....+...+++.++.++...+.....+.
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 253 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHh
Confidence 567778889888877653 36677888899999999999987766543
No 73
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=50.54 E-value=73 Score=30.49 Aligned_cols=90 Identities=14% Similarity=0.028 Sum_probs=61.4
Q ss_pred CCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHhh---cccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEcc
Q 015313 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (409)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~ 244 (409)
.++.++++.- .-.+|++.+...+..+... .+..++|++...++-+.-. +..+++++..|+..+.++
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM--VVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEcC
Confidence 4566666531 2368999998877776554 4678999999998876543 456899999999999988
Q ss_pred Cc-chHHHHHHHHhhcCCCCCCccccceeeecchH
Q 015313 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278 (409)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 278 (409)
.. ..+.+... ++..++..++....
T Consensus 157 ~~~~~~~l~~~----------l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 157 PQFPVERLALS----------LEDTGAPLLVTSRP 181 (570)
T ss_dssp TTSCHHHHHHH----------HHHHTCSEEEECTT
T ss_pred CCChHHHHHHH----------HHhcCCCEEEecch
Confidence 64 44444444 34445666655443
No 74
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=49.23 E-value=87 Score=27.82 Aligned_cols=60 Identities=15% Similarity=0.006 Sum_probs=45.7
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechh
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~ 124 (409)
+++|++..+.....-.-..+.++|...|.-+..+-|...+......++..++++++++..
T Consensus 83 l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 577877677777778888888999999986665544445555667789999999999753
No 75
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=44.59 E-value=1.6e+02 Score=25.75 Aligned_cols=67 Identities=7% Similarity=0.095 Sum_probs=44.7
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEech--hHHHHHHHH
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE--DYREVLQNV 132 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~--~~~~~~~~~ 132 (409)
+++++|++|+|+..-+.-..++.+|....|+.++.++.+ ++. ..+.++.+++.+|... +..+.+.+.
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i~~~~~~~~~~v~~~ 227 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTINSGDVNPVDEIKKI 227 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEEEC-CCCHHHHHHHH
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEEeCCCCCHHHHhhhh
Confidence 588999999999886676777777766667776666433 333 4566778888877543 334444443
No 76
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=44.00 E-value=1.1e+02 Score=30.01 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCCCCcEEEEecCCCCCCCceeeechHHHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEE
Q 015313 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (409)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~ 242 (409)
..++.++++... ..+| ....+|++.+...+..+.. ..+..++|++...+|.+--. +..+++++..|+..+.
T Consensus 94 ~~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 94 KTPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSV 168 (663)
T ss_dssp TCTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred cCCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEe
Confidence 356777776542 2222 2357999999887776654 44677899999999987533 4568999999999988
Q ss_pred ccC-cchHHHHHHHHhhcCCCCCCccccceeeecchH
Q 015313 243 MPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278 (409)
Q Consensus 243 ~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 278 (409)
++. +..+.+... ++..++..+++.+.
T Consensus 169 l~~~~~~~~l~~~----------l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 169 VFAGFSSNSLRDR----------INDGDSKVVITTDE 195 (663)
T ss_dssp CCTTSCHHHHHHH----------HHHHTCSEEEEESB
T ss_pred eCCCCCHHHHHHH----------HHhcCCeEEEEccc
Confidence 875 566666666 44456777766543
No 77
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=43.51 E-value=1e+02 Score=27.24 Aligned_cols=133 Identities=8% Similarity=-0.022 Sum_probs=70.4
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC-------CChHHHHHHHhcCCceEEEech-----------hHH
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLSTE-----------DYR 126 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~-------~~~~~~~~~l~~~~~~~vi~~~-----------~~~ 126 (409)
+++||.|++..+....+ ..++...|+.++.++.. .+.+.+...+++.++++|+... +..
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l 182 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEV 182 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHH
Confidence 57899988776655543 34566788888777653 6778888888766788776432 334
Q ss_pred HHHHHHhhccCCceeccCCCCCCCCCccccccchhhhccCCCCCCcEEEEecC----CCCCCCceeeech-HHHHHHHHH
Q 015313 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTS----GTTGKPKGVVHTH-KSIDAQVQM 201 (409)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS----GtTG~pK~v~~t~-~~l~~~~~~ 201 (409)
..+.++.++.+...++=.............. ...... ....|..++++|. |-+|.+-|.++.. +.+...+..
T Consensus 183 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~--~~~~~~-~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~ 259 (391)
T 3dzz_A 183 KRIAELCAKHQVLLISDEIHGDLVLTDEDIT--PAFTVD-WDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEE 259 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBCSSCCCC--CGGGSC-TTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEecccccccCCCCCce--ehhhcC-ccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHH
Confidence 4555555554433322111111100000000 000000 0112333444443 3477788888876 777776655
Q ss_pred HH
Q 015313 202 LT 203 (409)
Q Consensus 202 ~~ 203 (409)
..
T Consensus 260 ~~ 261 (391)
T 3dzz_A 260 SF 261 (391)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 78
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=40.44 E-value=53 Score=30.11 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC-HHHHH-HHHHHHhhCcEEEeC
Q 015313 32 LASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFVA-GVLGTWFSGCIAVPL 98 (409)
Q Consensus 32 l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~-~~~~~-~~~A~~~~G~~~~~i 98 (409)
+..+.+++|..+.+.| +++++|+.|.|..+.. .+++- +.-++..+|+.++.+
T Consensus 4 ~~~~l~k~A~~~v~~~---------------~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVG---------------LNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp CHHHHHHHHHHHHHTT---------------TCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHhC---------------cCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 4567888999998876 4999999999999955 34433 344566678876654
No 79
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=38.91 E-value=1.1e+02 Score=27.23 Aligned_cols=59 Identities=10% Similarity=-0.090 Sum_probs=38.6
Q ss_pred ccCCCCCEEEEEeCCC-HHHHHHHHHHHhhCcEEE-eCCCCCChHHHHHHHhcCCceEEEec
Q 015313 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAV-PLALSYPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~-~~~~~~~~A~~~~G~~~~-~i~~~~~~~~~~~~l~~~~~~~vi~~ 122 (409)
+++++|++|+|+...+ +-.++..+| ...|+.++ .....-..++....+++.+++.++..
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIA-AALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHH-HHcCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 4889999999999855 555555554 45687544 33443333444456778899888754
No 80
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=35.94 E-value=2.6e+02 Score=25.68 Aligned_cols=59 Identities=8% Similarity=-0.071 Sum_probs=42.9
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEech
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~ 123 (409)
+++|...++....+-.-..+.+++...|.-++.+-|...+......++..++++++++.
T Consensus 171 l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 171 ISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 46676666666667788888888999998666553433444556678999999999974
No 81
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=34.47 E-value=2e+02 Score=27.15 Aligned_cols=83 Identities=13% Similarity=0.003 Sum_probs=54.4
Q ss_pred CCCCcEEEEecCCCCCCC--ceeeechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEE
Q 015313 168 RGEDPALIVYTSGTTGKP--KGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (409)
Q Consensus 168 ~~~~~~~i~~TSGtTG~p--K~v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~ 242 (409)
.++.++++.... ..+.. ..-.+|++.+...+..+...+ +. ++|++...++-+.-. +..+++++..|+..+.
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~--~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA--FAIIVGIMKSGNTYVP 108 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH--HHHHHHHHHTTCEEEE
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEe
Confidence 456677665432 22222 235789999988777766544 45 689999888876533 4568899999999998
Q ss_pred ccCc-chHHHHHH
Q 015313 243 MPKF-SVRGIWQR 254 (409)
Q Consensus 243 ~~~~-~~~~~~~~ 254 (409)
++.. ..+.+...
T Consensus 109 l~~~~~~~~l~~~ 121 (562)
T 3ite_A 109 IEAGLPNDRKSFL 121 (562)
T ss_dssp CCTTSCHHHHHHH
T ss_pred cCCcCHHHHHHHH
Confidence 8764 44444444
No 82
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=34.25 E-value=61 Score=29.79 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEeCCC-HHHHH-HHHHHHhhCcEEEeC
Q 015313 32 LASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFVA-GVLGTWFSGCIAVPL 98 (409)
Q Consensus 32 l~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~l~~~~~-~~~~~-~~~A~~~~G~~~~~i 98 (409)
+..+.+++|..|.+.| +++++|+.|.|..+.. .+++- +.-++..+|+.++.+
T Consensus 7 ~~~~l~k~A~~lV~~~---------------~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 60 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVG---------------MNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRV 60 (418)
T ss_dssp HHHHHHHHHHHHHHTT---------------TCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred hHHHHHHHHHHHHHhC---------------cCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 5678888999999876 4999999999999854 44433 344556668766654
No 83
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.67 E-value=1.9e+02 Score=23.50 Aligned_cols=89 Identities=9% Similarity=-0.019 Sum_probs=50.0
Q ss_pred CeEEEecCc--hhHHHHHHHHHHHHhcCCEEEEc-cCcchHHHHHHHHhhcCCCCCCccccceeeec--chHH------H
Q 015313 212 DQFLHCLPL--HHVHGLFNALLAPLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTG--VPTM------Y 280 (409)
Q Consensus 212 d~~l~~~pl--~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~--~P~~------l 280 (409)
.+++...+- .|..|...--..--..|..++.. ...+++++.+. +.+++++.+.+ +-.+ +
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~----------~~~~~~d~v~l~~S~l~~~~~~~~ 162 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEE----------AAKHKGEKVLLVGSALMTTSMLGQ 162 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHH----------HHHTTTSCEEEEEECSSHHHHTHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHH----------HHHcCCCEEEEEchhcccCcHHHH
Confidence 455555444 26667643233334678877665 45678888888 56677876666 3222 2
Q ss_pred HHHHHhhhhhhHHHHHHhhhhh-ccceEEEeeCCCCCHHHHH
Q 015313 281 TRLIQGYEAMDTELQAASASAA-KQLRLMMCGSSALPLPVMQ 321 (409)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~-~~lr~v~~gG~~~~~~~~~ 321 (409)
+.+.+. .+...+ ..++ +++||.+++++..+
T Consensus 163 ~~~i~~----------l~~~~~~~~v~-v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 163 KDLMDR----------LNEEKLRDSVK-CMFGGAPVSDKWIE 193 (215)
T ss_dssp HHHHHH----------HHHTTCGGGSE-EEEESSSCCHHHHH
T ss_pred HHHHHH----------HHHcCCCCCCE-EEEECCCCCHHHHH
Confidence 222222 122222 1344 67899999976544
No 84
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=32.51 E-value=1.5e+02 Score=25.79 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=36.3
Q ss_pred ccCCCCCEEEEEeCCC-HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEec
Q 015313 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~-~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~ 122 (409)
+++++|++|+|+...+ +-..+..+| ...|+.++.+. +.++ ...+++.+++.++..
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i~~ 203 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQCINY 203 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSEEEET
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCEEEeC
Confidence 5899999999997555 455544444 56688766553 3444 455677788776643
No 85
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=31.58 E-value=98 Score=27.28 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=35.4
Q ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC----CChHHHHHHHhcCCceEEEec
Q 015313 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS----YPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 66 ~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~----~~~~~~~~~l~~~~~~~vi~~ 122 (409)
++||.|++..+....+.....++...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 689988877666655555554556678877766542 355667666654 56666654
No 86
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=31.38 E-value=1.7e+02 Score=25.81 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=35.0
Q ss_pred ccCCCCCEEEEEeCCCHH------HHHHHHH-HHhhCcEEEeCCCCC--------C----hHHHHHHHhcCCceEEEech
Q 015313 63 LAGGCGARIGIVAKPSFE------FVAGVLG-TWFSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~------~~~~~~A-~~~~G~~~~~i~~~~--------~----~~~~~~~l~~~~~~~vi~~~ 123 (409)
--+++||+|+|++|.+.- -+-.-.. +-..|..++.-+... + .+++...+.+-+++.|++..
T Consensus 8 ~~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 8 KSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 368999999999998732 2222222 223577666432111 1 12355566666777777653
No 87
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=31.35 E-value=2e+02 Score=25.60 Aligned_cols=57 Identities=5% Similarity=0.082 Sum_probs=37.3
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCc-EEEeCCCCCChHHHHHHHhcCCceEEEech
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~-~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~ 123 (409)
+++++|++|+|+..-.+-.+++.+| ...|+ .++.++.+ ++.+ .++++.+++.++...
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a-~~~Ga~~Vi~~~~~--~~~~-~~a~~lGa~~vi~~~ 246 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGA-KTAGASRIIGIDID--SKKY-ETAKKFGVNEFVNPK 246 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHH-HHHTCSCEEEECSC--TTHH-HHHHTTTCCEEECGG
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCC--HHHH-HHHHHcCCcEEEccc
Confidence 5899999999998733455544444 46687 56666543 2333 356788888877543
No 88
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=30.28 E-value=2.1e+02 Score=25.32 Aligned_cols=55 Identities=7% Similarity=-0.016 Sum_probs=36.1
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEe
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS 121 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~ 121 (409)
+++++|++|+|...-.+-..++.+| ...|+.++.+.. +++.+. .+++.+++.++.
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~ 239 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSS--SREKLD-RAFALGADHGIN 239 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEES--CHHHHH-HHHHHTCSEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEec--CchhHH-HHHHcCCCEEEc
Confidence 5899999999999433444444444 467887666543 344444 366778887776
No 89
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=30.02 E-value=2.1e+02 Score=25.75 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=36.7
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCc-EEEeCCCCCChHHHHHHHhcCCceEEEec
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~-~~~~i~~~~~~~~~~~~l~~~~~~~vi~~ 122 (409)
+++++|++|+|+..-.+-.+++.+| ...|+ .++.++.+ ++. ..++++.+++.++..
T Consensus 209 ~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 265 (404)
T 3ip1_A 209 GGIRPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPS--EVR-RNLAKELGADHVIDP 265 (404)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSC--HHH-HHHHHHHTCSEEECT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCC--HHH-HHHHHHcCCCEEEcC
Confidence 3789999999998744555555554 45688 66665433 333 345577788887754
No 90
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=29.92 E-value=2.1e+02 Score=25.05 Aligned_cols=53 Identities=11% Similarity=-0.068 Sum_probs=34.4
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEE
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~v 119 (409)
+++++|++|+|....+.-=..+...+...|+.++.+ .+++.+. .+++.+++.+
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~---~~~~~~~-~~~~lGa~~i 198 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT---ARGSDLE-YVRDLGATPI 198 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE---ECHHHHH-HHHHHTSEEE
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE---eCHHHHH-HHHHcCCCEe
Confidence 689999999999965544344444445678876655 2455544 4566777773
No 91
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.67 E-value=1.8e+02 Score=25.59 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=35.4
Q ss_pred cCCCCCEEEEEeCCCH------HHHHHHHH-HHhhCcEEEeCCCCC------------ChHHHHHHHhcCCceEEEech
Q 015313 64 AGGCGARIGIVAKPSF------EFVAGVLG-TWFSGCIAVPLALSY------------PESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 64 g~~~g~~V~l~~~~~~------~~~~~~~A-~~~~G~~~~~i~~~~------------~~~~~~~~l~~~~~~~vi~~~ 123 (409)
-+++||+|+|++|.+. +-+-.... +-..|..++.-+.-. ..+++...+.+-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 7899999999999752 22222222 233477666443211 122466666777788888753
No 92
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=29.41 E-value=1.1e+02 Score=27.36 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=36.9
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCC-----CCChHHHHHHHhcCC--ceEEEec
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL-----SYPESELLHVMHDSD--ISMVLST 122 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~-----~~~~~~~~~~l~~~~--~~~vi~~ 122 (409)
+++++||.|++-.+....+ .-++...|+.++.++. ..+.+.+...+...+ .++|+..
T Consensus 73 l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 73 KKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred cCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 4689999998877665443 3456678887766543 246777777663333 6666643
No 93
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=28.66 E-value=1.4e+02 Score=25.79 Aligned_cols=53 Identities=6% Similarity=-0.043 Sum_probs=36.2
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEE
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi 120 (409)
+++++|++|+|+..-..-.++..+| ...|+.++.+. + ++.+. .+++.+++.++
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~-~--~~~~~-~~~~lGa~~v~ 190 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQML-NNAGYVVDLVS-A--SLSQA-LAAKRGVRHLY 190 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHH-HHHTCEEEEEC-S--SCCHH-HHHHHTEEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEE-C--hhhHH-HHHHcCCCEEE
Confidence 6899999999999933455555444 56788776665 2 33333 45678888888
No 94
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=28.16 E-value=2.9e+02 Score=23.89 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=41.1
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechh
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~ 124 (409)
+++|+...+....+-.-..+.+++...|.-++.+-|...+......++..++++++++.+
T Consensus 63 ~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 355654445566677777788888899986655433333444556788999999999863
No 95
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=27.31 E-value=1.7e+02 Score=25.82 Aligned_cols=55 Identities=9% Similarity=-0.084 Sum_probs=37.1
Q ss_pred EEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHH
Q 015313 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126 (409)
Q Consensus 72 ~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~ 126 (409)
.+....+-.-..+.+++...|.-++.+-|...+......++..++++++++..+.
T Consensus 79 vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 3334456667777788888897555443333444556678999999999987543
No 96
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=27.23 E-value=2.8e+02 Score=24.12 Aligned_cols=56 Identities=11% Similarity=-0.031 Sum_probs=36.5
Q ss_pred ccCCCCCEEEEEeCCC-HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEec
Q 015313 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~-~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~ 122 (409)
+++++|++|+|....+ +-..++.+| ...|+.++.+..+- +.+. .+++.+++.++..
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~--~~~~-~~~~lga~~~~~~ 196 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNN--KHTE-ELLRLGAAYVIDT 196 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSS--TTHH-HHHHHTCSEEEET
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCH--HHHH-HHHhCCCcEEEeC
Confidence 6899999999998874 555555555 46688776665432 2232 3445677766643
No 97
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=27.02 E-value=3.3e+02 Score=24.02 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=41.8
Q ss_pred cCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC-----CChHHHHHHHhcCCceEEEech-----hHHHHHHHHh
Q 015313 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-----YPESELLHVMHDSDISMVLSTE-----DYREVLQNVA 133 (409)
Q Consensus 64 g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~-----~~~~~~~~~l~~~~~~~vi~~~-----~~~~~~~~~~ 133 (409)
++++||.|++..+...... .++...|+.++.++.+ .+.+++...++. +.++|+... ...+.+.++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTY---YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTVNLLGNPNNFDEINKII 151 (390)
T ss_dssp SCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEECGGGCCCCHHHHHHHH
T ss_pred CCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEECCccChhhHHHHHHHH
Confidence 5788999888777655444 3455678766555432 356677776654 456666532 2345555555
Q ss_pred hccC
Q 015313 134 SKSG 137 (409)
Q Consensus 134 ~~~~ 137 (409)
++.+
T Consensus 152 ~~~~ 155 (390)
T 3b8x_A 152 GGRD 155 (390)
T ss_dssp TTSC
T ss_pred HHcC
Confidence 5544
No 98
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=26.98 E-value=1.8e+02 Score=25.26 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=37.8
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEe
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS 121 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~ 121 (409)
+++++|++|+|....+.-=..+...+...|+.++.+.. +++.+....++.+++.++.
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG--GAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEE
Confidence 58999999999998664333344444567886665543 4555555547778877664
No 99
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=26.67 E-value=3.1e+02 Score=23.70 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=37.4
Q ss_pred ccCCCCCEEEEEeCCC-HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEec
Q 015313 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~-~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~ 122 (409)
.++++|++|+|....+ +-..++.+ +...|+.++.+.. +++.+. .+++.+++.++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~-a~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQL-LKMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHH-HHHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHH-HHHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 4889999999999655 44444444 4567887666653 344444 5667788877653
No 100
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=26.54 E-value=85 Score=20.17 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=26.8
Q ss_pred HHHHHHHhcccCCCeeEEEeCCccccHHHHHHHHHH
Q 015313 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALR 38 (409)
Q Consensus 3 ~~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~ 38 (409)
+...|.......|+.+.++..++..+|+.+-+-...
T Consensus 32 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~ 67 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNL 67 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 445666666678898888888999999887665443
No 101
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=26.12 E-value=1.7e+02 Score=26.79 Aligned_cols=59 Identities=15% Similarity=0.028 Sum_probs=37.3
Q ss_pred CCCCCEEEEEe-CCCHHHHHHH--------HHHHhhCcEEEeCCCC----CChHHHHHHHhc-CCceEEEech
Q 015313 65 GGCGARIGIVA-KPSFEFVAGV--------LGTWFSGCIAVPLALS----YPESELLHVMHD-SDISMVLSTE 123 (409)
Q Consensus 65 ~~~g~~V~l~~-~~~~~~~~~~--------~A~~~~G~~~~~i~~~----~~~~~~~~~l~~-~~~~~vi~~~ 123 (409)
+++||.|++.. +......... -.+...|+.+..++.. .+.+.+...+++ .++++|+++.
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 68899887765 3332222222 1234568887777653 567778887774 5778888766
No 102
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=25.92 E-value=3.2e+02 Score=23.53 Aligned_cols=57 Identities=11% Similarity=-0.061 Sum_probs=39.6
Q ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeC-CCCCChHHHHHHHhcCCceEEEechh
Q 015313 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYPESELLHVMHDSDISMVLSTED 124 (409)
Q Consensus 66 ~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i-~~~~~~~~~~~~l~~~~~~~vi~~~~ 124 (409)
++|+.|+. ...+-.-..+.+++...|.-++.+ +...+. .....++..++++++++.+
T Consensus 65 ~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~-~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 65 KPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSL-ERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp CTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCH-HHHHHHHHTTCEEEEECGG
T ss_pred CCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCH-HHHHHHHHCCCEEEEeCCC
Confidence 56665544 666677777778888999866554 444444 4556778999999999863
No 103
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=25.91 E-value=2.9e+02 Score=23.77 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=38.2
Q ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeC-CCCCChHHHHHHHhcCCceEEEechh
Q 015313 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYPESELLHVMHDSDISMVLSTED 124 (409)
Q Consensus 66 ~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i-~~~~~~~~~~~~l~~~~~~~vi~~~~ 124 (409)
++|+.|+. ...+-.-..+.++|...|.-++.+ +...+. .....++..++++++++.+
T Consensus 63 ~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 63 KPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSL-ERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp CTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCH-HHHHHHHHTTCEEEEECGG
T ss_pred CCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCH-HHHHHHHHcCCEEEEECCC
Confidence 55665544 555566666777778889865554 444444 4455678999999999864
No 104
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.75 E-value=2.2e+02 Score=25.57 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=34.9
Q ss_pred cCCCCCEEEEEeCCCHH------HHHHHHH-HHhhCcEEEeCCCCC------------ChHHHHHHHhcCCceEEEech
Q 015313 64 AGGCGARIGIVAKPSFE------FVAGVLG-TWFSGCIAVPLALSY------------PESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 64 g~~~g~~V~l~~~~~~~------~~~~~~A-~~~~G~~~~~i~~~~------------~~~~~~~~l~~~~~~~vi~~~ 123 (409)
-+++||+|+|++|.+.- -+-.... +-..|..++.-+... ..+++...+.+-++++|++..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 68999999999998732 2222222 223577766443211 112355556666777777753
No 105
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=25.62 E-value=1.9e+02 Score=25.39 Aligned_cols=56 Identities=4% Similarity=-0.008 Sum_probs=36.8
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCc-EEEeCCCCCChHHHHHHHhcCCceEEEec
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~-~~~~i~~~~~~~~~~~~l~~~~~~~vi~~ 122 (409)
+++++|++|+|+..-.+-.++..+| ...|+ .++.++.+ ++. ..++++.+++.++..
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSR--KHC-CDIALEYGATDIINY 218 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCC--HHH-HHHHHHHTCCEEECG
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCC--HHH-HHHHHHhCCceEEcC
Confidence 5899999999998644555555554 45787 55555433 333 346677888877754
No 106
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=25.10 E-value=1.7e+02 Score=26.75 Aligned_cols=56 Identities=5% Similarity=-0.073 Sum_probs=31.4
Q ss_pred CCCCCEEEEEeCCCHHHHHHHH-HHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEec
Q 015313 65 GGCGARIGIVAKPSFEFVAGVL-GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~-A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~ 122 (409)
+++||.|++..+........+- .+...|+.++.++.. +.+.+...++. +.++|+.+
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e 174 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLE 174 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEE
Confidence 5778877655554433333222 455667777766655 55556655543 45666643
No 107
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=25.07 E-value=1.5e+02 Score=26.43 Aligned_cols=56 Identities=7% Similarity=-0.035 Sum_probs=37.7
Q ss_pred EEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhH
Q 015313 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125 (409)
Q Consensus 70 ~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~ 125 (409)
..++....+-.-..+.+++...|.-++.+-|...+......++..++++++++..+
T Consensus 94 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~ 149 (364)
T 4h27_A 94 AHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELL 149 (364)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSST
T ss_pred CEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 33444444666777777888889755544343344556677889999999998643
No 108
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=24.99 E-value=2.4e+02 Score=24.82 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=35.2
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC--------CChHHHHHHHhcCCceEEEe
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS--------YPESELLHVMHDSDISMVLS 121 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~--------~~~~~~~~~l~~~~~~~vi~ 121 (409)
+++||.|++..+....+. .++...|+.++.++.. .+.+++...++. +++|+.
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i 170 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFN---SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFIL 170 (391)
T ss_dssp SCTTCEEEECSSCCTHHH---HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEE
T ss_pred CCCCCEEEEcCCCCHHHH---HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEE
Confidence 478998887766554433 4556778887777654 467778887776 666654
No 109
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=24.85 E-value=1.8e+02 Score=25.76 Aligned_cols=55 Identities=9% Similarity=0.040 Sum_probs=39.2
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcC---CceEEEech
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDS---DISMVLSTE 123 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~---~~~~vi~~~ 123 (409)
+++||.|++..+....+. .++...|+.+++++. .+.+++...++.. ++++|++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 578999888877665543 445667888887765 4677888888765 567777643
No 110
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=24.34 E-value=1.1e+02 Score=26.92 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=28.9
Q ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC----CChHHHHHHHhcCCceEEEec
Q 015313 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS----YPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 66 ~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~----~~~~~~~~~l~~~~~~~vi~~ 122 (409)
++||.|++..+..+.+.-....+...|+.++.++.+ .+.+++...++. ++++|+..
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEe
Confidence 567777666665544443333333456655544332 345556555543 45555543
No 111
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=24.21 E-value=1.7e+02 Score=31.37 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=48.0
Q ss_pred eechHHHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHhcCCEEEEccCcchHHHHHH
Q 015313 189 VHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQR 254 (409)
Q Consensus 189 ~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~ 254 (409)
.+|++.+...+..+...+ +..+++++...++-+. .++..+++++.+|+..+.++...+.+-+..
T Consensus 489 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~--~~vv~~lailkaG~~~vpldp~~p~~rl~~ 555 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSL--ELVIGILGVLKAGAAYLPVDPKLPEDRISY 555 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSH--HHHHHHHHHHHTTCEEEECCTTSCHHHHHH
T ss_pred eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCH--HHHHHHHHHHHHCCEEEEECCCCHHHHHHH
Confidence 689999988777765544 6788999998888764 345678999999999999987554444333
No 112
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=24.01 E-value=3.1e+02 Score=23.88 Aligned_cols=53 Identities=8% Similarity=-0.086 Sum_probs=35.8
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC-------CChHHHHHHHhcCCceEEEe
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLS 121 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~-------~~~~~~~~~l~~~~~~~vi~ 121 (409)
+++||.|++..+....+. .++...|+.++.++.. .+.+++...+ ..++++|+.
T Consensus 103 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i 162 (383)
T 3kax_A 103 TKENESVLVQPPIYPPFF---EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLL 162 (383)
T ss_dssp CCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEE
T ss_pred CCCCCEEEEcCCCcHHHH---HHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEE
Confidence 578999887776655443 4566778888777643 5677888777 445666654
No 113
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=23.99 E-value=3e+02 Score=24.26 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=36.4
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC-------CChHHHHHHHhcCCceEEEe
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLS 121 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~-------~~~~~~~~~l~~~~~~~vi~ 121 (409)
.++||.|++..+....+. .++...|+.++.++.. .+.+.+...+++.++++|+.
T Consensus 110 ~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 110 TKPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp CCTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 467998888766544433 4456678877776542 56777888777556777774
No 114
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=23.94 E-value=2.4e+02 Score=24.64 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=35.8
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEE
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi 120 (409)
+++++|++|+|...-.+-..+..+| ...|+.++.+..+ ++.+. .+++.+++.++
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARN--EHKKQ-DALSMGVKHFY 225 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSS--STTHH-HHHHTTCSEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCC--HHHHH-HHHhcCCCeec
Confidence 4889999999998744555555554 4568876666543 23333 45678888887
No 115
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=23.90 E-value=3.7e+02 Score=23.58 Aligned_cols=57 Identities=12% Similarity=-0.032 Sum_probs=38.0
Q ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeC-CCCCChHHHHHHHhcCCceEEEechh
Q 015313 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYPESELLHVMHDSDISMVLSTED 124 (409)
Q Consensus 66 ~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i-~~~~~~~~~~~~l~~~~~~~vi~~~~ 124 (409)
++|+.|+-.. .+-.-..+.+++...|.-++.+ +...+ ......++..++++++++.+
T Consensus 76 ~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 76 KPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMS-VERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp CTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSC-HHHHHHHHHTTCEEEEECGG
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCC-HHHHHHHHHCCCEEEEECCC
Confidence 5666554443 4666666777778888755544 44444 44556788899999999863
No 116
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=23.18 E-value=1.8e+02 Score=28.83 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=40.2
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC---------C-----ChHHHHHHHhcC-Cce----EEEech
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS---------Y-----PESELLHVMHDS-DIS----MVLSTE 123 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~---------~-----~~~~~~~~l~~~-~~~----~vi~~~ 123 (409)
+-+++||.|++--+++.... -++..+|+.++.+++. . +.+.+...+++. +.+ ++++.+
T Consensus 230 al~~pGD~VLv~r~~H~S~~---~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p 306 (715)
T 3n75_A 230 YSAPAGSTILIDRNCHKSLT---HLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS 306 (715)
T ss_dssp HHCCTTCEEEEESSCCHHHH---HHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS
T ss_pred HhCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC
Confidence 35689999988877766554 3678899998887653 1 477788888753 333 556554
No 117
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=23.16 E-value=2.3e+02 Score=24.71 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=38.8
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEech
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~ 123 (409)
.++++|++|+|...-.+-..++.+|- ..|+.++.+.. +++.+. .+++.+++.++...
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i~~~ 218 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVAVNAR 218 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEEEETT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEEEeCC
Confidence 58899999999987556666666554 56887666543 344443 56778888777543
No 118
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=23.00 E-value=2.1e+02 Score=25.25 Aligned_cols=57 Identities=9% Similarity=0.054 Sum_probs=36.2
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC-----CChHHHHHHHhcCCceEEEech
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-----YPESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~-----~~~~~~~~~l~~~~~~~vi~~~ 123 (409)
+++++||.|++..+...... -++...|+.++.++.. .+.+.+...++. ++++|+...
T Consensus 74 ~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~ 135 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH 135 (393)
T ss_dssp TTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC
T ss_pred cCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC
Confidence 34788999888777655543 4456678766655422 456677776654 567777543
No 119
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=23.00 E-value=1.9e+02 Score=25.58 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=37.2
Q ss_pred ccCCCC-CEEEEEeCCC-HHHHHHHHHHHhhCcEEEeCCCCCCh-HHHHHHHhcCCceEEEec
Q 015313 63 LAGGCG-ARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPE-SELLHVMHDSDISMVLST 122 (409)
Q Consensus 63 ~g~~~g-~~V~l~~~~~-~~~~~~~~A~~~~G~~~~~i~~~~~~-~~~~~~l~~~~~~~vi~~ 122 (409)
+++++| ++|+|+...+ +-.+++.+|- ..|+.++.+...... ++....+++.+++.++..
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELGATQVITE 223 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcCCeEEEec
Confidence 378999 9999999855 5555555554 568865555322222 233344577888887754
No 120
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=22.98 E-value=3.9e+02 Score=23.67 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=35.3
Q ss_pred cc-CCCCCEEEEEeCCCHHHHHHHHHHHhhCc-EEEeCCCCCChHHHHHHHhcCCceEEEec
Q 015313 63 LA-GGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 63 ~g-~~~g~~V~l~~~~~~~~~~~~~A~~~~G~-~~~~i~~~~~~~~~~~~l~~~~~~~vi~~ 122 (409)
++ +++|++|+|...-.+-..++.+| ...|+ .++.+.. +++.+ ..+++.+++.++..
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~--~~~~~-~~~~~lGa~~vi~~ 247 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAG--SPNRL-KLAEEIGADLTLNR 247 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEES--CHHHH-HHHHHTTCSEEEET
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHH-HHcCCceEEEEcC--CHHHH-HHHHHcCCcEEEec
Confidence 47 89999999999433455555544 45684 5555543 34443 34567888877753
No 121
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=22.95 E-value=1.4e+02 Score=26.20 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=32.5
Q ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC----CChHHHHHHHhcCCceEEEec
Q 015313 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS----YPESELLHVMHDSDISMVLST 122 (409)
Q Consensus 66 ~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~----~~~~~~~~~l~~~~~~~vi~~ 122 (409)
++||.|++..+..+.+......+...|+.++.++.+ .+.+++...++. +.++|+..
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEE
Confidence 678888777766666655544444567665555432 345566665543 44555544
No 122
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=22.63 E-value=2.4e+02 Score=24.82 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=34.3
Q ss_pred cCCCCCEEEEEeCCCHH------HHHHHHHHH-hhCcEEEeCCCCC--------C----hHHHHHHHhcCCceEEEech
Q 015313 64 AGGCGARIGIVAKPSFE------FVAGVLGTW-FSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 64 g~~~g~~V~l~~~~~~~------~~~~~~A~~-~~G~~~~~i~~~~--------~----~~~~~~~l~~~~~~~vi~~~ 123 (409)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-+... + .+++...+.+-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 68999999999997641 222222222 3577666443211 1 12355556666777777753
No 123
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=22.55 E-value=2.4e+02 Score=24.58 Aligned_cols=55 Identities=7% Similarity=0.060 Sum_probs=35.5
Q ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCC--C----CCChHHHHHHHhc----CCceEEEec
Q 015313 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLA--L----SYPESELLHVMHD----SDISMVLST 122 (409)
Q Consensus 65 ~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~--~----~~~~~~~~~~l~~----~~~~~vi~~ 122 (409)
+++||.|++..+........ +...|+.++.++ . ..+.+++...+++ -++++++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 57899888777766554433 567787766665 2 2366778777764 356666654
No 124
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=22.48 E-value=3.4e+02 Score=23.63 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=38.1
Q ss_pred cCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEech
Q 015313 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 64 g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~ 123 (409)
++++|++|++...-..-..+..+|-..-|+.++.++. +++.+ .++++.+++.++...
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~~i~~~ 224 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADAAVKSG 224 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSEEEECS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCEEEcCC
Confidence 7899999999988545666666665554666666543 34433 456778888877644
No 125
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=22.43 E-value=3.9e+02 Score=23.34 Aligned_cols=55 Identities=11% Similarity=-0.138 Sum_probs=35.3
Q ss_pred ccCCCCCEEEEEeCCC-HHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEe
Q 015313 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS 121 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~-~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~ 121 (409)
+++++|++|+|....+ +-..++. .+...|+.++.+.. +++.+. .+++.+++.++.
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~-~a~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~~~ 218 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQ-LARAFGAEVYATAG--STGKCE-ACERLGAKRGIN 218 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHH-HHHHTTCEEEEEES--SHHHHH-HHHHHTCSEEEE
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHH-HHHHcCCEEEEEeC--CHHHHH-HHHhcCCCEEEe
Confidence 5899999999996655 4444444 44567887666543 344443 445567776664
No 126
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=22.14 E-value=2.6e+02 Score=25.74 Aligned_cols=59 Identities=8% Similarity=-0.104 Sum_probs=41.0
Q ss_pred EEEEEeCCCHHHHHHHHHHHhhCcEEEeC-CCCCChHHHHHHHhcCCceEEEechhHHHHH
Q 015313 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYPESELLHVMHDSDISMVLSTEDYREVL 129 (409)
Q Consensus 70 ~V~l~~~~~~~~~~~~~A~~~~G~~~~~i-~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 129 (409)
+..+....+-.-....+++.+.|.-++.+ +...+ ......++..++++++++.++.+..
T Consensus 161 ~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~-~~k~~~~r~~GA~Vv~v~~~~~~a~ 220 (442)
T 3ss7_X 161 YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADAR-AWKKAKLRSHGVTVVEYEQDYGVAV 220 (442)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSC-HHHHHHHHHTTCEEEEESSCHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCC-HHHHHHHHHCCCEEEEECCCHHHHH
Confidence 35566666777777888888889855544 44444 4455677899999999987654433
No 127
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=21.92 E-value=2.2e+02 Score=26.12 Aligned_cols=60 Identities=5% Similarity=0.019 Sum_probs=38.3
Q ss_pred cCCCCCEEEEEeCCCHHHHHHHH---------HHHhhCcEEEeCCC---CCChHHHHHHHhc-CCceEEEech
Q 015313 64 AGGCGARIGIVAKPSFEFVAGVL---------GTWFSGCIAVPLAL---SYPESELLHVMHD-SDISMVLSTE 123 (409)
Q Consensus 64 g~~~g~~V~l~~~~~~~~~~~~~---------A~~~~G~~~~~i~~---~~~~~~~~~~l~~-~~~~~vi~~~ 123 (409)
=+++||.|++...+.......++ .+...|+.+..++. ..+.+++...+++ .++++|+++.
T Consensus 112 ll~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 112 NLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp TCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred hcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 36899998876513333222222 23456888877765 2566778887775 5788888876
No 128
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=20.51 E-value=1.9e+02 Score=25.61 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=37.3
Q ss_pred cCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEech
Q 015313 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 64 g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~ 123 (409)
++++|++|+|...-.+-..++.+|-.+.|+.++.+.. +++.+ ..+++.+++.++...
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 7899999999999445555555554432886665543 34443 345678888877543
No 129
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.36 E-value=2.7e+02 Score=24.72 Aligned_cols=72 Identities=6% Similarity=-0.050 Sum_probs=43.3
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEEeCCCC----CChHHHHHHHhcC--CceEEEech-----hHHHHHHH
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS----YPESELLHVMHDS--DISMVLSTE-----DYREVLQN 131 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~----~~~~~~~~~l~~~--~~~~vi~~~-----~~~~~~~~ 131 (409)
+++++||.|++..+...... .++...|+.++.++.. .+.+++...++.. ++++|+... ...+.+.+
T Consensus 67 l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~ 143 (394)
T 1o69_A 67 AGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVE 143 (394)
T ss_dssp TTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHH
T ss_pred cCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEECCCCChhhHHHHHH
Confidence 34788999988887766554 3444578776665532 4567787777653 456666543 22344555
Q ss_pred HhhccC
Q 015313 132 VASKSG 137 (409)
Q Consensus 132 ~~~~~~ 137 (409)
+.++.+
T Consensus 144 l~~~~~ 149 (394)
T 1o69_A 144 ICKEND 149 (394)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 555443
No 130
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=20.33 E-value=4.4e+02 Score=23.17 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=36.6
Q ss_pred ccCCCCCEEEEEeCCCHHHHHHHHHHHhhCc-EEEeCCCCCChHHHHHHHhcCCceEEEech
Q 015313 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLSTE 123 (409)
Q Consensus 63 ~g~~~g~~V~l~~~~~~~~~~~~~A~~~~G~-~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~ 123 (409)
+++++|++|+|+..-.+-..++.+|- ..|+ .++.+..+ ++.+ .++++.+++.++...
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~~-~~a~~lGa~~vi~~~ 244 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCK-AAGASRIIGVGTH--KDKF-PKAIELGATECLNPK 244 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECSC--GGGH-HHHHHTTCSEEECGG
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEECCC--HHHH-HHHHHcCCcEEEecc
Confidence 58899999999986445555555554 5687 55555433 3333 345678888777543
No 131
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=20.03 E-value=3.4e+02 Score=24.40 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=39.8
Q ss_pred EEEEeCCCHHHHHHHHHHHhhCcEEEeCCCCCChHHHHHHHhcCCceEEEechhHHH
Q 015313 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127 (409)
Q Consensus 71 V~l~~~~~~~~~~~~~A~~~~G~~~~~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~ 127 (409)
..+....+-.-..+.+++...|.-++.+-|...+......++..++++++++..+.+
T Consensus 114 ~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 170 (398)
T 4d9i_A 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD 170 (398)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 334466667777788888888986655534444455566789999999999875543
Done!