Query 015314
Match_columns 409
No_of_seqs 187 out of 1717
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 10:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gir_A Aminomethyltransferase; 100.0 2.3E-87 7.8E-92 671.9 40.6 366 29-408 27-393 (393)
2 1wsr_A Aminomethyltransferase; 100.0 1.5E-85 5E-90 658.1 44.4 372 35-409 3-375 (375)
3 1yx2_A Aminomethyltransferase; 100.0 4.5E-85 1.5E-89 652.4 42.7 359 34-403 2-365 (365)
4 1wos_A Aminomethyltransferase; 100.0 2.8E-83 9.7E-88 639.2 44.9 359 37-408 1-363 (364)
5 3tfi_A GCVT-like aminomethyltr 100.0 1.2E-83 4.1E-88 641.8 41.3 354 34-401 9-369 (369)
6 1vlo_A Aminomethyltransferase; 100.0 2.2E-82 7.7E-87 635.1 42.2 351 33-404 10-372 (381)
7 1v5v_A Aminomethyltransferase; 100.0 7.5E-82 2.6E-86 635.8 45.1 365 35-408 3-397 (401)
8 1pj5_A N,N-dimethylglycine oxi 100.0 1.9E-77 6.4E-82 655.5 42.2 368 31-408 425-828 (830)
9 2gag_A Heterotetrameric sarcos 100.0 4.7E-75 1.6E-79 644.1 44.5 366 36-408 573-963 (965)
10 3ttg_A Putative aminomethyltra 100.0 1.5E-71 5.2E-76 551.8 28.9 322 64-401 17-355 (355)
11 1vly_A SPOT PR51, unknown prot 100.0 1.4E-62 4.8E-67 484.8 30.8 302 78-404 29-338 (338)
12 2gag_C Heterotetrameric sarcos 100.0 2E-30 6.8E-35 238.3 13.1 169 75-266 27-205 (210)
13 1x31_C Sarcosine oxidase gamma 100.0 3.2E-29 1.1E-33 229.7 13.9 165 76-261 26-198 (206)
14 2gag_C Heterotetrameric sarcos 97.5 0.0009 3.1E-08 60.6 11.5 83 79-167 111-196 (210)
15 1x31_C Sarcosine oxidase gamma 97.4 0.0011 3.7E-08 59.9 11.2 83 79-167 109-194 (206)
16 3geh_A MNME, tRNA modification 92.2 0.5 1.7E-05 47.6 9.5 67 86-152 22-97 (462)
17 3gir_A Aminomethyltransferase; 91.5 1 3.6E-05 44.3 10.7 79 173-254 75-159 (393)
18 1wsr_A Aminomethyltransferase; 90.8 1.8 6E-05 42.2 11.5 78 173-253 47-130 (375)
19 3gee_A MNME, tRNA modification 90.3 0.81 2.8E-05 46.3 8.8 65 86-151 28-104 (476)
20 1yx2_A Aminomethyltransferase; 90.1 1.5 5.1E-05 42.5 10.3 79 173-254 46-130 (365)
21 1wos_A Aminomethyltransferase; 90.1 1.6 5.6E-05 42.2 10.5 79 173-254 42-126 (364)
22 1v5v_A Aminomethyltransferase; 88.6 2 6.9E-05 42.2 10.1 76 173-251 46-127 (401)
23 1vly_A SPOT PR51, unknown prot 88.6 2.1 7.3E-05 41.0 10.0 78 173-254 30-113 (338)
24 1vlo_A Aminomethyltransferase; 88.3 2.2 7.5E-05 41.7 10.1 79 173-254 55-140 (381)
25 3tfi_A GCVT-like aminomethyltr 86.1 2 7E-05 41.7 8.3 79 78-163 141-223 (369)
26 3ttg_A Putative aminomethyltra 84.8 3.4 0.00012 39.8 9.2 78 173-254 35-119 (355)
27 1pj5_A N,N-dimethylglycine oxi 81.4 4.5 0.00016 43.5 9.4 79 79-163 591-676 (830)
28 1xzp_A Probable tRNA modificat 81.3 2.1 7.3E-05 43.2 6.3 51 86-139 46-97 (482)
29 2gag_A Heterotetrameric sarcos 80.4 6.8 0.00023 43.0 10.4 78 173-253 623-706 (965)
30 3geh_A MNME, tRNA modification 76.9 21 0.00071 35.6 12.0 81 181-264 23-117 (462)
31 3gee_A MNME, tRNA modification 72.1 25 0.00085 35.2 11.2 80 181-263 29-124 (476)
32 3l48_A Outer membrane usher pr 48.6 86 0.003 23.8 8.4 61 323-396 8-69 (94)
33 2hvy_B GAR1, small nucleolar R 33.1 1.1E+02 0.0037 23.8 6.3 52 334-387 29-82 (104)
34 1pm3_A MTH1895; unknown functi 27.7 98 0.0033 23.5 5.2 35 338-373 28-62 (97)
35 2ey4_C Small nucleolar RNP sim 24.4 1.3E+02 0.0043 22.4 5.0 49 334-384 29-79 (82)
36 1xzp_A Probable tRNA modificat 20.7 4.1E+02 0.014 26.2 9.6 72 181-254 47-130 (482)
No 1
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=100.00 E-value=2.3e-87 Score=671.87 Aligned_cols=366 Identities=40% Similarity=0.646 Sum_probs=340.6
Q ss_pred hccCCCcccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccc
Q 015314 29 HFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIA 108 (409)
Q Consensus 29 ~~~~~~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~ 108 (409)
.|.+. ++|+||||++|.++||+|.+++||+||.||++++.+||+|+|++|+|||+|||++|+|+||||.+|||+++||
T Consensus 27 ~~~~~--~~r~tpl~~~h~~~GA~~~~~~gw~~P~~y~~~~~~E~~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~tn 104 (393)
T 3gir_A 27 EFETS--SLKTLPLYELHEKAGAKFGAFAGWRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALPV 104 (393)
T ss_dssp -------CCEECTTHHHHHHTTCEEEEETTEEEEEECTTCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSSS
T ss_pred CCCcc--ccccCcchHHHHHcCCEEEeeCCEecchhhcCCHHHHHHHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhccc
Confidence 45554 6999999999999999999999999999998559999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEe
Q 015314 109 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQ 188 (409)
Q Consensus 109 di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~ 188 (409)
||++|++|+++|++|||++|+|++|++|+|+++|+|+|++++++.+.+++||++++.. .+|+| .++++++|+||
T Consensus 105 dv~~l~~G~~~yt~~ln~~G~i~dD~~V~rl~~d~~~lv~~a~~~~~~~~~L~~~~~~-----~~V~i-~~~~~a~lalq 178 (393)
T 3gir_A 105 DAALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG-----FECQV-IALERVLLALQ 178 (393)
T ss_dssp CTTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTTT-----SSCEE-EECCCEEEEEE
T ss_pred ccccCCCCcEEEEEEECCCCcEEEEEEEEEecCCEEEEEECchhHHHHHHHHHhhccC-----CceEE-EECCEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999864 48999 88889999999
Q ss_pred CCChHHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhccCCCceEecccchh
Q 015314 189 GPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARD 268 (409)
Q Consensus 189 GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~ 268 (409)
||+|+++|+++++ +++.+||+++..+.+ +++++|++|+||+||||+++++.+..+|+.|+++ .++.|+|+.+|+
T Consensus 179 GP~A~~vL~~l~~-~l~~~~~~~~~~~~i---~~~i~R~gytGE~G~Ei~~p~~~a~~lw~~L~~a--~g~~p~Gl~A~d 252 (393)
T 3gir_A 179 GPQAAAVLADAGL-PGNELLFMQGFEPQQ---DWFITRSGYTGEDGFEIALPIGCARALAEKLLGD--SRVEWVGLAARD 252 (393)
T ss_dssp STTHHHHHHHTTC-CCTTCCTTBEECSST---TCEEESCCSSSSSEEEEEECHHHHHHHHHHHHTS--TTEEECCHHHHH
T ss_pred CccHHHHHHHhcC-chhhcccceeEEEEE---eEEEEeCCCCCCCeEEEEEEHHHHHHHHHHHHhc--CCceeccccchh
Confidence 9999999999987 888899988776554 6899999999999999999999999999999997 479999999999
Q ss_pred hhhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCC-CCCCCCCeEecCCC
Q 015314 269 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG-PPARSHSKVHDEQG 347 (409)
Q Consensus 269 ~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~-~~~~~g~~v~~~~g 347 (409)
+||||+|+|.||+|++++++|+|+||+|+|+|+|.++|||+|||+|+|++++|++||||+|.+++ .+|.+|++|++.+|
T Consensus 253 ~LRiEaG~p~~g~dl~~~~~P~EagL~~~V~~~k~~Kg~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~G~~v~~~~g 332 (393)
T 3gir_A 253 SLRLEAGLCLHGNDITPDTTPIDAALTWAVPKNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEG 332 (393)
T ss_dssp HHHHHTTCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHCCSTTHHHHHHHHHHCCSSEEEEEEESSSSCCCTTCEEECTTS
T ss_pred hHHHhcCcccchhhcCCCCCHHHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEEccCC
Confidence 99999999999999999999999999999999831118999999999999999999999999985 56789999986689
Q ss_pred cEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCCCCCC
Q 015314 348 NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 408 (409)
Q Consensus 348 ~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~~ 408 (409)
+.||+|||++|||+++++||||||+.+++++|+.++|+++|++++|+|+++||++++|||+
T Consensus 333 ~~vG~VTS~~~sp~l~~~iaLa~v~~~~~~~G~~l~v~i~g~~~~a~v~~~PF~~~~~~~~ 393 (393)
T 3gir_A 333 NRIGVVTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRYFKG 393 (393)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCC-
T ss_pred eEEEEEEEEEECCCCCcEEEEEEEcHHHcCCCCEEEEEECCEEEEEEEecCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 2
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=100.00 E-value=1.5e-85 Score=658.05 Aligned_cols=372 Identities=52% Similarity=0.864 Sum_probs=345.5
Q ss_pred cccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCC
Q 015314 35 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA 114 (409)
Q Consensus 35 ~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~ 114 (409)
.++|+||||++|.++||+|.+++||+||.+|+.+..+||+|+|++++|||+||+++|+|+|+||.+|||+++||||++|+
T Consensus 3 ~~~~~tpl~~~~~~~Ga~~~~~~g~~~p~~y~~~~~~E~~a~r~~~gl~Dls~~g~i~v~G~da~~fLq~l~t~dv~~l~ 82 (375)
T 1wsr_A 3 EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELR 82 (375)
T ss_dssp -CCBCCTTHHHHHHTTCEEEEETTEEEEEECSSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCC
T ss_pred CccccCccHHHHHHCCCEEEEECCEEechhhCCCHHHHHHHHHhCcEEEECCceEEEEEECCCHHHHHHHhcccccCcCC
Confidence 58999999999999999999999999999998568999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEeCCChHH
Q 015314 115 PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAP 194 (409)
Q Consensus 115 ~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~a~~ 194 (409)
+|+++|++|||++|+|++|++|+|+++|+|+|+++++..+.+++||++++..|...+.+|+|++. ++++|+||||+|.+
T Consensus 83 ~g~~~y~~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~~~~~~~~V~i~d~-~~~~lal~GP~a~~ 161 (375)
T 1wsr_A 83 PNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVL-DNALLALQGPTAAQ 161 (375)
T ss_dssp TTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHHHHHTTCCCEEEEC-CCEEEEEESTTHHH
T ss_pred CCCEEEEEEECCCCeEEEEEEEEEEcCCEEEEEeCCccHHHHHHHHHHhhhhhcCCCCeEEEEEC-CEEEEEEECcCHHH
Confidence 99999999999999999999999998889999999999999999999998642101248999766 78999999999999
Q ss_pred HHhccccCCCCCCCCceeEEEEECCee-EEEEeeCCCCCCeeEEEeecccHHHHHHHHHhccCCCceEecccchhhhhhh
Q 015314 195 VLQHLTKDDLSKLYFGEFRILDINGVS-CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLE 273 (409)
Q Consensus 195 vL~~l~~~~l~~l~~~~~~~~~i~g~~-~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lRiE 273 (409)
+|+++++.+++++||+.+..+.+++.+ ++++|++|+||+||||+++++.+..+|+.|++++ ++.|+|+.+|+++|||
T Consensus 162 vL~~l~~~dl~~l~~~~~~~~~~~g~~~~~i~R~g~tGe~G~el~~~~~~a~~l~~~L~~ag--~~~p~G~~a~d~lRie 239 (375)
T 1wsr_A 162 VLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNP--EVKLAGLAARDSLRLE 239 (375)
T ss_dssp HHHTTCSSCGGGCCTTBEEEEEETTEEEEEEESCCSSSSSEEEEEECHHHHHHHHHHHHTST--TEEECCHHHHHHHHHH
T ss_pred HHHhhcCcchhhCCccceEEEEECCcceEEEEeCccCCCCeEEEEeeHHHHHHHHHHHHhcC--CeEeCCHHHHHHHHHh
Confidence 999998878888999999999999988 9999999999999999999999999999999983 3899999999999999
Q ss_pred cccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCCCCCCCCCeEecCCCcEeEEE
Q 015314 274 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEI 353 (409)
Q Consensus 274 ~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~~~~~~g~~v~~~~g~~vG~v 353 (409)
+|+|.+|+|++++++|+|+||+|+|+|+|.++|||+|||+++|+++.|++||+++|..++.+|..|++|++.+|+.||+|
T Consensus 240 aG~p~~g~d~~~~~~P~Eagl~~~V~~~~~~Kg~fiGqe~lar~~~~g~~rrlv~l~~~~~~~~~g~~v~~~~g~~vG~v 319 (375)
T 1wsr_A 240 AGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTV 319 (375)
T ss_dssp TTCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHTCSTTHHHHHHHHTTCCSCEEEEEEESSSCCCTTCEEECTTSCEEEEE
T ss_pred CCcCCcCccCCCCCChhHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCEEEEEEEcCCccCCCCCEEEcCCCcEEEEE
Confidence 99999999999999999999999999992101999999999999999999999999877667889999985589999999
Q ss_pred EeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCCCCCCC
Q 015314 354 TSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 409 (409)
Q Consensus 354 tS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~~~ 409 (409)
||++|||+++++||||||+.+++++|+.++|+++|+.++|+|+++||++++|||++
T Consensus 320 tS~~~sp~lg~~iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~~~~~~~ 375 (375)
T 1wsr_A 320 TSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYTLK 375 (375)
T ss_dssp EEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCCC-
T ss_pred ecceecCcCCceEEEEEEChHHcCCCCEEEEEECCEEEEEEEEccCCcCccccCCC
Confidence 99999999999999999999988899999999999999999999999999999985
No 3
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=4.5e-85 Score=652.44 Aligned_cols=359 Identities=36% Similarity=0.622 Sum_probs=339.0
Q ss_pred CcccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCC
Q 015314 34 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL 113 (409)
Q Consensus 34 ~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l 113 (409)
++++|+||||++|.++||+|++++||+||.+|+ ++.+||+|+|+++++||+|||++|+|+||||.+|||+++||||++|
T Consensus 2 ~~~~~~tpl~~~~~~~ga~~~~~~g~~~p~~y~-~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fLq~l~t~dv~~l 80 (365)
T 1yx2_A 2 NAMLKRTPLFDLYKEYGGKTIDFGGWELPVQFS-SIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTNDVSAL 80 (365)
T ss_dssp ---CBCCTTGGGHHHHTCEEEEETTEEEEEESS-CHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSSCGGGC
T ss_pred CCccccCccHHHHHHcCCEEEeECCEEhhhhcC-CHHHHHHHHHhCcEEEECCCeEEEEEECCCHHHHHHHhcccccccC
Confidence 578999999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEE-eCCeEEEEEeCCCh
Q 015314 114 APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI-HDERSLLALQGPLA 192 (409)
Q Consensus 114 ~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~-~~~~~~l~l~GP~a 192 (409)
++|+++|++|||++|+|++|++|+|+++++|+|+++++..+.+++||++++. .+|+|++ ++++++++|+||+|
T Consensus 81 ~~g~~~y~~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~------~~V~i~d~s~~~~~lal~Gp~a 154 (365)
T 1yx2_A 81 TPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEHAA------GDVQIDNQSDQIALLAVQGPKA 154 (365)
T ss_dssp CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHTCC------SSCEEEECTTTEEEEEEESTTH
T ss_pred CCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHhhcc------CCeEEEECcCCEEEEEEECcCH
Confidence 9999999999999999999999999988999999999999999999999864 3799976 78899999999999
Q ss_pred HHHHhccccCCCCCCCCceeE-EEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhcc-CCCceEecccchhhh
Q 015314 193 APVLQHLTKDDLSKLYFGEFR-ILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS-EGKVRLTGLGARDSL 270 (409)
Q Consensus 193 ~~vL~~l~~~~l~~l~~~~~~-~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag-~~~~~~~G~~a~~~l 270 (409)
.++|+++++.+++.++|+.+. .+.+++.++++.|++|+||+||||+++++.+..+|+.|++++ ++++.|+|+.+|+++
T Consensus 155 ~~~L~~l~~~dl~~~~~~~~~~~~~~~g~~~~i~R~g~tge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~g~~a~~~l 234 (365)
T 1yx2_A 155 EAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAMHIWKKIIDAGDAYGLIPCGLGARDTL 234 (365)
T ss_dssp HHHHHTTBSSCGGGCCTTBEEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHGGGTEEEECHHHHHHH
T ss_pred HHHHHHhhCCChhhCCcceeEEEEEECCeEEEEEeCcccCCCEEEEEEcHHHHHHHHHHHHhcchhcCceeCCHHHHHHh
Confidence 999999988888889999888 889999999999999999999999999999999999999997 678999999999999
Q ss_pred hhhcccccccCCCCCCCCccccccccccccccCcCCC-CcCHHHHHhhHhcCCCeEEEEEEeCC-CCCCCCCeEecCCCc
Q 015314 271 RLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGG-FLGAEKILKQLDEGPPVRRVGFFAGG-PPARSHSKVHDEQGN 348 (409)
Q Consensus 271 RiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~Gc-yiGqE~lar~~~~g~~rrlv~l~~~~-~~~~~g~~v~~~~g~ 348 (409)
|||+|+|.+|+|++++++|+|+||+|+|||+| || |+|||+++|++++|++|||++|.+++ .+|.+|++|+ .+|+
T Consensus 235 RieaG~p~~g~d~~~~~~P~e~~l~~~V~~~K---gc~yiGqe~lar~~~~g~~rrlv~l~~~~~~~~~~g~~v~-~~g~ 310 (365)
T 1yx2_A 235 RFEANIPLYGQELTRDITPIEAGIGFAVKHKK---ESDFFGKSVLSEQKENGAKRKLVGLEMIEKGIPRHGYEVF-QNGK 310 (365)
T ss_dssp HHHTTCCCBTTTBSTTCCTTTTTCGGGCCTTC---SSCCTTHHHHHHHHHHCCSEEEEEEEESSSCCCCTTCEEE-ETTE
T ss_pred HHhcCCCcCccccCCCCCHHHCCccceecCCC---CCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEE-ECCe
Confidence 99999999999999999999999999999999 98 99999999999999999999999986 5678999999 6899
Q ss_pred EeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCC
Q 015314 349 PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPT 403 (409)
Q Consensus 349 ~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~ 403 (409)
.||+|||++|||+++++||||||+.+++++|+.++|+++|++++|+|+++||+++
T Consensus 311 ~vG~vtS~~~sp~~~~~iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~ 365 (365)
T 1yx2_A 311 SVGKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKKLVKAKVVKTPFYKR 365 (365)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECCCC---
T ss_pred eEEEEEeccccCCCCceEEEEEEChHHcCCCCEEEEEECCEEEEEEEEcCCCCCC
Confidence 9999999999999999999999999988899999999999999999999999874
No 4
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=100.00 E-value=2.8e-83 Score=639.22 Aligned_cols=359 Identities=39% Similarity=0.628 Sum_probs=341.4
Q ss_pred cccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCC
Q 015314 37 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPG 116 (409)
Q Consensus 37 ~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g 116 (409)
+|+||||++|+++||+|++++||+||.+|+ ++.+||+|+|+++++||+||+++|+|+|+||.+|||+++||||++|++|
T Consensus 1 ~~~tpl~~~~~~~ga~~~~~~g~~~p~~y~-~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fL~~l~t~dv~~l~~g 79 (364)
T 1wos_A 1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDG 79 (364)
T ss_dssp CBCCTTHHHHHHTTCEEEEETTEEEEEESS-CHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTT
T ss_pred CCCCccHHHHHHCCCEEEeECCEEhhhhhC-CHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhcccccccCCCC
Confidence 589999999999999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEE-eCCeEEEEEeCCChHHH
Q 015314 117 TGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI-HDERSLLALQGPLAAPV 195 (409)
Q Consensus 117 ~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~-~~~~~~l~l~GP~a~~v 195 (409)
+++||+|||++|+|++|++|+|+++|+|+|+++++..+.+++||++|+.. .+|+|++ ++++++++|+||+|.++
T Consensus 80 ~~~yt~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~-----~~V~i~d~s~~~~~l~l~Gp~a~~~ 154 (364)
T 1wos_A 80 KAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKN-----FDVEVSNISDTTALIAFQGPKAQET 154 (364)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHTTCTT-----SSCEEEECGGGEEEEEEESTTHHHH
T ss_pred CEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccC-----CCEEEEECcCCEEEEEEECcCHHHH
Confidence 99999999999999999999999989999999999999999999999763 4899975 67899999999999999
Q ss_pred HhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhcc-CCCceEecccchhhhhhhc
Q 015314 196 LQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS-EGKVRLTGLGARDSLRLEA 274 (409)
Q Consensus 196 L~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag-~~~~~~~G~~a~~~lRiE~ 274 (409)
|+++++.+++.++|+.+..+.+++.++++.|++|+||+||||+++++.+..+|+.|++++ ++|+.|+|+.+|+++|||+
T Consensus 155 L~~l~~~dl~~l~~~~~~~~~~~g~~~~i~R~g~tge~G~ei~~~~~~a~~l~~~L~~ag~~~g~~~~g~~a~~~lRie~ 234 (364)
T 1wos_A 155 LQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDGRPAGLGARDVCRLEA 234 (364)
T ss_dssp HGGGBSSCSTTSCTTBEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHHT
T ss_pred HHHhhCCCccccCccceEEEEECCeEEEEEecCCCCCCeEEEEEeHHHHHHHHHHHHhcchhcCceeCCHHHHhhhhHhc
Confidence 999988888889999999999999999999999999999999999999999999999987 6779999999999999999
Q ss_pred ccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCC-CCCCCCCeEecCCCcEeEEE
Q 015314 275 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG-PPARSHSKVHDEQGNPIGEI 353 (409)
Q Consensus 275 G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~-~~~~~g~~v~~~~g~~vG~v 353 (409)
|+|.+|+|++++++|+|+||+|+|||+| | |+|||+++|++++ ++|||++|.+++ .+|.+|++|+ .+|+.||+|
T Consensus 235 G~p~~g~d~~~~~~P~e~~l~~~V~~~K---g-yiGqe~lar~~~~-~~rrlv~l~~~~~~~~~~g~~v~-~~g~~vG~v 308 (364)
T 1wos_A 235 TYLLYGQDMDENTNPFEVGLSWVVKLNK---D-FVGKEALLKAKEK-VERKLVALELSGKRIARKGYEVL-KNGERVGEI 308 (364)
T ss_dssp TCCCBTTTBCTTSCGGGGTCGGGCCTTS---C-CTTHHHHHHHHHT-CCEEEEEEEESSSCCCCTTCEEE-ETTEEEEEE
T ss_pred CCcCcccccCCCCCHHHCCcccccCCCC---C-CcCHHHHHHHHhc-cCeEEEEEEECCCcCCCCCCEEE-ECCeEEEEE
Confidence 9999999999999999999999999999 7 9999999999999 999999999986 4678899999 689999999
Q ss_pred EeeeecCCCCceEEEEEEcCCccCCCCEEEEEECC-eEEeEEEEcCCCcCCCCCCC
Q 015314 354 TSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRG-KAYDGNITKMPFVPTKYYKP 408 (409)
Q Consensus 354 tS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g-~~~~a~v~~~Pf~~~~~~~~ 408 (409)
||++|||+++++||||||+.+ +++|+.++|++.| +.++++|+++||++++++|.
T Consensus 309 tS~~~sp~~g~~iala~v~~~-~~~g~~l~v~~~~~~~~~a~v~~~Pf~~~~~~~~ 363 (364)
T 1wos_A 309 TSGNFSPTLGKSIALALVSKS-VKIGDQLGVVFPGGKLVEALVVKKPFYRGSVRRE 363 (364)
T ss_dssp EEEEEETTTTEEEEEEEEETT-CCTTCEEEEEETTTEEEEEEEECSCSCCCSCC--
T ss_pred EeceecCcCCceEEEEEEccc-cCCCCEEEEEeCCCEEEEEEEEccCCCCcccccc
Confidence 999999999999999999999 8899999999999 99999999999999998873
No 5
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=100.00 E-value=1.2e-83 Score=641.77 Aligned_cols=354 Identities=22% Similarity=0.365 Sum_probs=328.9
Q ss_pred CcccccCcchHHHHHCCCe-EeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCC
Q 015314 34 AENLKKTALHDFHVANGGK-MVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAG 112 (409)
Q Consensus 34 ~~~~r~tpl~~~~~~~Ga~-~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~ 112 (409)
+|++|+||||++|+++||+ |..++||+||.+|+ ++.+||+|+|++|+|||+|||+++.|+|+||.+|||+++||||++
T Consensus 9 ~r~~~~tpl~~~h~~~Ga~~~~~~~gw~~P~~y~-~~~~E~~avR~~~glfDvSh~g~i~v~G~DA~~fL~~l~t~dv~~ 87 (369)
T 3tfi_A 9 SRRLRSTPYTSRIEKQGVTAYTIYNHMLLPAAFG-SIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMTCRDLSK 87 (369)
T ss_dssp BTTBBCCTTHHHHTTTTCCEEEEETTEEEEEESS-CHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBSSCCTT
T ss_pred ccccCCCccHHHHHHcCCeEEeccCCEEcccccC-CHHHHHHHHHcCeEEEeCCCCEEEEEECCCHHHHHhhhccccccc
Confidence 3889999999999999998 68999999999999 699999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEeCCCh
Q 015314 113 LAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 192 (409)
Q Consensus 113 l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~a 192 (409)
|++|+++||+|||++|+|++|++|+|+++|+|+|++++. .+..||+++...+ +.+|+|++ +++++|+||||+|
T Consensus 88 L~~G~~~yt~~ln~~G~i~dD~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~~---~~~V~i~~-~~~a~lalqGP~A 160 (369)
T 3tfi_A 88 SKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADS---DVIFFAKGLASGH---KFDVKIVE-PVVDIMAIQGPKS 160 (369)
T ss_dssp CCTTBEEECCEECTTSCEEECCEEEEEETTEEEEECCSS---CHHHHHHHHHHHH---TCCCEEEC-CSCEEEEEESTTH
T ss_pred CCCCcEEEEEEECCCCCEEEEEEEEEecCCEEEEEECcH---HHHHHHHHhhhhc---CCeEEEEE-CCEEEEEEECccH
Confidence 999999999999999999999999999999999988654 3578999886422 35899975 6789999999999
Q ss_pred HHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeec-ccHHHHHHHHHhcc-CCCceEecccchhhh
Q 015314 193 APVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPS-ERAVDLAKAILEKS-EGKVRLTGLGARDSL 270 (409)
Q Consensus 193 ~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~-~~a~~l~~~L~~ag-~~~~~~~G~~a~~~l 270 (409)
+++|+++++.+++++||+++..+.++|.+++++|++|+||+||||++|+ +.+.++|+.|+++| ++|+.++|.. +++
T Consensus 161 ~~~L~~l~~~~l~~l~~~~~~~~~i~g~~~~i~R~gytGE~G~Ei~~~~~~~a~~lw~~L~~ag~~~g~~~~~~~--~~l 238 (369)
T 3tfi_A 161 FALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGKEFNVGPGCPN--LIE 238 (369)
T ss_dssp HHHHHHHHCGGGGGCCTTBEEEEEETTEEEEEESCCSSSSCEEEEEECSHHHHHHHHHHHHHHTGGGTCEEECCC--HHH
T ss_pred HHHHHhhcCCchhhCCCceEEEEEECCeEEEEEeCccCCCCeEEEEEecHHHHHHHHHHHHhhCcccCceeccch--hhH
Confidence 9999999887888899999999999999999999999999999999999 99999999999997 6788888753 458
Q ss_pred hhhcccccccCCCCCCCCccccccccccccccCcCC-CCcCHHHHHhhHhcCCCeEEEEEEeCCC-CC--CCCCeEecCC
Q 015314 271 RLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGFFAGGP-PA--RSHSKVHDEQ 346 (409)
Q Consensus 271 RiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~G-cyiGqE~lar~~~~g~~rrlv~l~~~~~-~~--~~g~~v~~~~ 346 (409)
|||+|+|.||+|++++++|+|+||+|+|+|+| | ||+|||+++|++++|++||||+|.+++. .+ .+|++|+ .+
T Consensus 239 RlEaG~~~~g~d~~~~~~P~Eagl~~~V~~~K---g~~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~~~g~~v~-~~ 314 (369)
T 3tfi_A 239 RIESALLSYGNDFDNNDNPFECGFDQYVSLDS---DINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYD-EN 314 (369)
T ss_dssp HHHTTCCCBTTTBCTTCCGGGTTCGGGCCCSS---SCCCTTHHHHHHHHHHCCSEEEEEEEESSSCCCCCSCEEEEC-TT
T ss_pred HHhcCCCCccccCCCCCChHHCCchhhccCCC---CCCCcCHHHHHHHHhcCCCeEEEEEEECCCCCCCcCCCCEEE-eC
Confidence 99999999999999999999999999999998 6 9999999999999999999999999864 22 4678998 79
Q ss_pred CcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCc
Q 015314 347 GNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 401 (409)
Q Consensus 347 g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~ 401 (409)
|+.||+|||++|||+++++||||||+.+++++|+.++|+++|++++|+|+++|||
T Consensus 315 g~~vG~VTS~~~sp~lg~~iala~v~~~~~~~G~~l~v~i~g~~~~a~v~~~Pf~ 369 (369)
T 3tfi_A 315 NNVIGELRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI 369 (369)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSSCC
T ss_pred CeEEEEEEeeeECCCCCceEEEEEECHHHcCCCCEEEEEECCEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999997
No 6
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=100.00 E-value=2.2e-82 Score=635.12 Aligned_cols=351 Identities=35% Similarity=0.571 Sum_probs=327.1
Q ss_pred CCcccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCC
Q 015314 33 DAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAG 112 (409)
Q Consensus 33 ~~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~ 112 (409)
..+++|+||||++|.++||+|.+++||+||.+|+ ++.+||+|+|++++|||+|||++|+|+||||.+|||+++||||++
T Consensus 10 ~~~~~~~tpl~~~h~~~Ga~~~~~~g~~~p~~y~-~~~~E~~avr~~~gl~DlS~~g~i~v~G~DA~~fLq~l~t~dv~~ 88 (381)
T 1vlo_A 10 ALRAAQQTPLYEQHTLCGARMVDFHGWMMPLHYG-SQIDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAK 88 (381)
T ss_dssp ------CCTTHHHHHHTTCEEEEETTEEEEEESS-CHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCGGG
T ss_pred CCCCcccCchHHHHHHcCCEEEeECCEEcccccC-CHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhccccccc
Confidence 3579999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred C-CCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEeCCC
Q 015314 113 L-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPL 191 (409)
Q Consensus 113 l-~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~ 191 (409)
| ++|+++|++|||++|+|++|++|+|+++|+|+|++++++.+.+++||++++.. .+|+|++++++++|+||||+
T Consensus 89 l~~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~-----~~V~i~ds~~~~~lalqGP~ 163 (381)
T 1vlo_A 89 LTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEP-----FGIEITVRDDLSMIAVQGPN 163 (381)
T ss_dssp CCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHHGG-----GTCEEEECTTEEEEEEESTT
T ss_pred cCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccC-----CceEEEECCCEEEEEEECcc
Confidence 9 89999999999999999999999999988999999999999999999999864 37999667789999999999
Q ss_pred hHHHHhccc----cCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhccCCCceEecccch
Q 015314 192 AAPVLQHLT----KDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGAR 267 (409)
Q Consensus 192 a~~vL~~l~----~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~ 267 (409)
|.++|++++ +.++++++|+++... + +++++|++|+||+||||+++++.+..+|+.|+++ |+.|+|+.+|
T Consensus 164 a~~~l~~l~~~~~~~~l~~~~~~~~~~~---g-~~~i~R~gytGe~G~ei~~~~~~a~~l~~~L~~~---g~~p~G~~a~ 236 (381)
T 1vlo_A 164 AQAKAATLFNDAQRQAVEGMKPFFGVQA---G-DLFIATTGYTGEAGYEIALPNEKAADFWRALVEA---GVKPCGLGAR 236 (381)
T ss_dssp HHHHHHTTCCHHHHHHHTTCCSSBEEEE---T-TEEEECCCSSSSCEEEEEEEHHHHHHHHHHHHHT---TCEECCHHHH
T ss_pred HHHHHHHhhccccCCCcccCCcceeEEe---c-cEEEEecCCCCCCEEEEEEeHHHHHHHHHHHHhc---CCcccCHHHH
Confidence 999999987 456788998887765 5 8999999999999999999999999999999998 5999999999
Q ss_pred hhhhhhcccccccCCCCCCCCccccccccccccccCcCC--CCcCHHHHHhhHhcCCCeEEEEEEeCC-CCCCCCCeEec
Q 015314 268 DSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG--GFLGAEKILKQLDEGPPVRRVGFFAGG-PPARSHSKVHD 344 (409)
Q Consensus 268 ~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~G--cyiGqE~lar~~~~g~~rrlv~l~~~~-~~~~~g~~v~~ 344 (409)
+++|||+|+|.+|+|++++++|+|+||+|+|+|+| | ||+|||+++|++++|++ |+++|.+++ .+|.+|++|+
T Consensus 237 d~LRiEaG~p~~g~d~~~~~~P~EagL~~~V~~~K---g~~cfiGqE~lar~~~~G~~-rlv~l~~~~~~~~~~g~~v~- 311 (381)
T 1vlo_A 237 DTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEP---ADRDFIGREALEVQREHGTE-KLVGLVMTEKGVLRNELPVR- 311 (381)
T ss_dssp HHHHHHTTCCCBTTTBCTTSCGGGTTCGGGCCCCS---TTCCCTTHHHHHHHHHHCCC-EEEEEEECSSSCCCTTCEEE-
T ss_pred HHHHHHcCCCcccccCCCCCChhhCCccceeECCC---CCCCCcCHHHHHHHHhcCCC-EEEEEEECCCcCCCCCCEEE-
Confidence 99999999999999999999999999999999999 7 99999999999999988 999999986 4678999998
Q ss_pred CC---Cc-EeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCC
Q 015314 345 EQ---GN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 404 (409)
Q Consensus 345 ~~---g~-~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~ 404 (409)
.+ |+ .||+|||++|||+++++||||||+.+ +|+.++|+++|+.++|+|+++||+++.
T Consensus 312 ~~~~~g~~~vG~VtS~~~sp~lg~~iala~v~~~---~g~~l~v~~~g~~~~a~v~~~Pf~~~~ 372 (381)
T 1vlo_A 312 FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEG---IGETAIVQIRNREMPVKVTKPVFVRNG 372 (381)
T ss_dssp EECTTCCEEEEEEEEEEEETTTTEEEEEEEECTT---CCSEEEEEETTEEEEEEEECSCCEETT
T ss_pred ECCCCCCeeEEEEEEeeeCCCCCceEEEEEEEcC---CCCEEEEEECCEEEEEEEecCCCCCCC
Confidence 45 78 99999999999999999999999987 799999999999999999999999885
No 7
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=7.5e-82 Score=635.84 Aligned_cols=365 Identities=33% Similarity=0.557 Sum_probs=345.1
Q ss_pred cccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCC
Q 015314 35 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA 114 (409)
Q Consensus 35 ~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~ 114 (409)
+++|+||||++|.++||+|.+++||+||.+|+ ++.+||+|+|++++|||+|++++|+|+|+||.+|||+++||||++++
T Consensus 3 ~~~~~tpl~~~~~~~ga~~~~~~g~~~p~~y~-~~~~E~~a~r~~~gl~dls~~~~i~v~G~Da~~fLq~l~t~dv~~l~ 81 (401)
T 1v5v_A 3 QMVKRVHIFDWHKEHARKIEEFAGWEMPIWYS-SIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTNDISKPP 81 (401)
T ss_dssp CCCBCCTTHHHHHHHCSEEEEETTEEEEEESS-CHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHSSSCTTSSC
T ss_pred CccccCchHHHHHHcCCEEEEECCEEechhcC-CHHHHHHHHHhCEEEEECCCcEEEEEECCCHHHHHHHhhccccCcCC
Confidence 57899999999999999999999999999999 69999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHH----HHHHhhccCCCCCeEEEE-eCCeEEEEEeC
Q 015314 115 PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI----EAHMKSFTAKGGDVSWHI-HDERSLLALQG 189 (409)
Q Consensus 115 ~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L----~~~~~~~~~~~~~V~i~~-~~~~~~l~l~G 189 (409)
+|+++|+++||++|+|++|++|+|+++++|+|+++++..+.+++|| ++++... +.+|+|++ ++++++++|+|
T Consensus 82 ~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~~~~~~---~~~V~i~d~s~~~~~lal~G 158 (401)
T 1v5v_A 82 AISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFT---KLDLEIELKTYDIAMFAVQG 158 (401)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHHHTTS---CCCCEEEECTTTEEEEEEES
T ss_pred CCCEEEEEEECCCCcEEEEEEEEEecCCEEEEEECcccHHHHHHHHHHHHHhhhccC---CCcEEEEECcCCEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999 7776211 25899965 67899999999
Q ss_pred CChHHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEee--------------cccHHHHHHHHHhcc
Q 015314 190 PLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVP--------------SERAVDLAKAILEKS 255 (409)
Q Consensus 190 P~a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~--------------~~~a~~l~~~L~~ag 255 (409)
|+|.++|+++++.+++.+||+.+..+.+++.++++.|++|+||+||||+++ ++.+..+|+.|++++
T Consensus 159 P~a~~vL~~l~~~dl~~~~~~~~~~~~~~g~~~~i~R~g~tge~G~ei~~~~~~~~~~~~~~~~~~~~a~~l~~~L~~ag 238 (401)
T 1v5v_A 159 PKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILEEG 238 (401)
T ss_dssp TTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEECCCTTCSSGGGCCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhCCCchhcCccceEEEEeCCeEEEEEeCCCCCCCeEEEEEeccccccccccccccHHHHHHHHHHHHhhh
Confidence 999999999988888889999999999999999999999999999999999 999999999999987
Q ss_pred -CCCceEecccchhhhhhhcccccccCCCC---------CCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeE
Q 015314 256 -EGKVRLTGLGARDSLRLEAGLCLYGNDME---------QHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVR 325 (409)
Q Consensus 256 -~~~~~~~G~~a~~~lRiE~G~p~~g~d~~---------~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rr 325 (409)
++++.|+|+.+|+++|||+|+|.+|+|++ ++++|+|+||+|+|||+| | |+|||+++|++++|++||
T Consensus 239 ~~~g~~p~g~~a~~~lRieaG~p~~g~d~~~~~~~~~~~~~~~P~E~gl~~~V~f~K---g-yiGqE~lar~~~~G~~rr 314 (401)
T 1v5v_A 239 KKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAIYWDK---D-FIGKDALLKQKERGVGRK 314 (401)
T ss_dssp GGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGGGCCTTS---C-CTTHHHHHHHHHHCCCEE
T ss_pred hccCceecChhHhhHHHHhcCCCccccccChhhccccCcCCCChHHCCcccccCCCC---C-ccCHHHHHHHHhhCCCeE
Confidence 77899999999999999999999999999 899999999999999999 7 999999999999998899
Q ss_pred EEEEEeCC-CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCC
Q 015314 326 RVGFFAGG-PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 404 (409)
Q Consensus 326 lv~l~~~~-~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~ 404 (409)
|++|.+++ .+|.+|++|+ .+|+.||+|||++|||+++++||||||+.+++++|+.++|+++|+.++|+|+++||+++.
T Consensus 315 lv~l~~~~~~~~~~g~~v~-~~g~~vG~VtS~~~sp~~~~~iala~v~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~ 393 (401)
T 1v5v_A 315 LVHFKMIDKGIPREGYKVY-ANGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYDPK 393 (401)
T ss_dssp EEEEEESSSCCCCTTCEEE-ETTEEEEEEEEEEECTTTCSEEEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSCSSCTT
T ss_pred EEEEEECCCCCCCCCCEEE-ECCEEEEEEEeeeEcCCCCceEEEEEEchHHcCCCCEEEEEECCEEEEEEEEccCCcccc
Confidence 99999986 4678899999 689999999999999999999999999999988999999999999999999999999998
Q ss_pred CCCC
Q 015314 405 YYKP 408 (409)
Q Consensus 405 ~~~~ 408 (409)
++++
T Consensus 394 ~~~~ 397 (401)
T 1v5v_A 394 KYGL 397 (401)
T ss_dssp TSST
T ss_pred ccCc
Confidence 8753
No 8
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=100.00 E-value=1.9e-77 Score=655.53 Aligned_cols=368 Identities=24% Similarity=0.377 Sum_probs=339.2
Q ss_pred cCCCcccccCcchHHHHHCCCeEeecCCcccccccccC---------------------------HHHHHHHHHhCeEEE
Q 015314 31 ASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDS---------------------------IMESTLNCRQNGSLF 83 (409)
Q Consensus 31 ~~~~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~---------------------------~~~E~~a~r~~~~l~ 83 (409)
.++ |++|+||||++|+++||+|.+++||+||.||... +.+||+|+|++++||
T Consensus 425 ~~~-~~~~~tpl~~~~~~~ga~~~~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~ 503 (830)
T 1pj5_A 425 LSP-RNLRVSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMY 503 (830)
T ss_dssp SSS-CCSBCCTTHHHHHHTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEE
T ss_pred ccc-cccccCcCHHHHHHcCCEEEEECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEE
Confidence 344 7899999999999999999999999999999720 679999999999999
Q ss_pred eCCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHH
Q 015314 84 DVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 163 (409)
Q Consensus 84 DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~ 163 (409)
|+|||++|.|+|+||.+|||+++|||| .+++|+++|++|||++|+|++|++|+|+++++|+| +++.+.+++||+++
T Consensus 504 d~s~~~~~~v~G~da~~fL~~~~t~dv-~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~ 579 (830)
T 1pj5_A 504 DMTPLKRLEVSGPGALKLLQELTTADL-AKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERA 579 (830)
T ss_dssp ECTTSCEEEEESTTHHHHHHHHBSSCC-CSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHH
T ss_pred EcCcEEEEEEECcCHHHHHHHhccccc-cCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHH
Confidence 999999999999999999999999999 88999999999999999999999999999988888 45577899999999
Q ss_pred Hhhcc--CCCCC-eEEEE-eCCeEEEEEeCCChHHHHhccccCCCCC--CCCceeEEEEECCeeEEEEeeCCCCCCeeEE
Q 015314 164 MKSFT--AKGGD-VSWHI-HDERSLLALQGPLAAPVLQHLTKDDLSK--LYFGEFRILDINGVSCFLTRTGYTGEDGFEI 237 (409)
Q Consensus 164 ~~~~~--~~~~~-V~i~~-~~~~~~l~l~GP~a~~vL~~l~~~~l~~--l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el 237 (409)
+..+. ..+.+ |+|++ ++++++|+||||+|.++|++++..+++. ++|+.+..+.+++.+++++|++|+||+||||
T Consensus 580 ~~~~~~~~~~~~~v~i~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g~~~~~~r~~~tge~g~ei 659 (830)
T 1pj5_A 580 ARHQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWEL 659 (830)
T ss_dssp HHHHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEE
T ss_pred hhhcccccCCCCeEEEEEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECCEEEEEEECcccCCCcEEE
Confidence 86420 00126 99965 6789999999999999999998777754 8999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHhcc-CCCceEecccchhhhhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHh
Q 015314 238 SVPSERAVDLAKAILEKS-EGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILK 316 (409)
Q Consensus 238 ~~~~~~a~~l~~~L~~ag-~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar 316 (409)
+++++.+..+|+.|++++ ++++.|+|+.+|++||||+|+|.||+|++++++|+|+||+|+|+|+| |||+|||+++|
T Consensus 660 ~~~~~~~~~l~~~l~~ag~~~~~~~~g~~a~~~lRle~G~~~~g~d~~~~~~P~e~~l~~~v~~~k---g~f~G~e~~~r 736 (830)
T 1pj5_A 660 YTSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAK---ESFIGKGALEG 736 (830)
T ss_dssp EEEHHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTS---SCCTTHHHHTT
T ss_pred EecHHHHHHHHHHHHhhhhhcCCEEehhhhhhhhhhhcCCccccccCCCCCCHHHCCCcCeeeCCC---CCCCCHHHHHH
Confidence 999999999999999987 67899999999999999999999999999999999999999999999 99999999999
Q ss_pred hHhcCCCeEEEEEEeCC--CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEE
Q 015314 317 QLDEGPPVRRVGFFAGG--PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGN 394 (409)
Q Consensus 317 ~~~~g~~rrlv~l~~~~--~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~ 394 (409)
++++|++||||+|.+++ .++..|++|+ .+|+.||+|||++|||+++++||||||+.++++ |+.++|++.|+.++|+
T Consensus 737 ~~~~g~~rrlv~l~~~~~~~~~~~g~~v~-~~g~~vG~vts~~~sp~~~~~iala~v~~~~~~-g~~~~v~~~~~~~~a~ 814 (830)
T 1pj5_A 737 RTEEASARRLRCLTIDDGRSIVLGKEPVF-YKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSV-GDSVDIEYFGRRITAT 814 (830)
T ss_dssp CCSTTCSEEEEEEEETTSCCCCCSCCEEE-ETTEEEEECCSEEEETTTTEEEEEEEEETTCCT-TCEEEEEETTEEEEEE
T ss_pred HHhcCCCeEEEEEEEeCCCCCCCCCCEEe-eCCeEEEEEecceeccccCceEEEEEechhhcC-CCEEEEEECCEEEEEE
Confidence 99999999999999986 4577899998 689999999999999999999999999999887 9999999999999999
Q ss_pred EEcCCCcCCCCCCC
Q 015314 395 ITKMPFVPTKYYKP 408 (409)
Q Consensus 395 v~~~Pf~~~~~~~~ 408 (409)
|+++||+++...|.
T Consensus 815 v~~~pf~~~~~~r~ 828 (830)
T 1pj5_A 815 VTEDPLYDPKMTRL 828 (830)
T ss_dssp EECSCSSCTTCTTT
T ss_pred EEcCCCcCCccccc
Confidence 99999999987664
No 9
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=4.7e-75 Score=644.05 Aligned_cols=366 Identities=21% Similarity=0.379 Sum_probs=341.1
Q ss_pred ccccCcchHHHHHCCCeEeecCCccccccccc-------CHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccc
Q 015314 36 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKD-------SIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIA 108 (409)
Q Consensus 36 ~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~-------~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~ 108 (409)
++|+||||++|+++||+|.+++||+||.||+. ++.+||+|+|++++|||+|||++|.|+||||.+|||+++||
T Consensus 573 ~~r~tpl~~~~~~~Ga~~~~~~gw~~p~~y~~~g~~~~~~~~~E~~avr~~~gl~D~S~~g~i~v~G~da~~fL~~l~t~ 652 (965)
T 2gag_A 573 PARITAMHSWHLSHGAEFEDVGQWKRPWYYPQAGETMDQAVYRESKAVRDSVGMLDATTLGKIEIRGKDAAEFLNRIYTN 652 (965)
T ss_dssp CCBCCTTHHHHHHTTCEEEEETTEEEEEECCCTTCCHHHHHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSS
T ss_pred CcccCCCHHHHHHcCCEEeeECCEeeehhhCCCCcccchhHHHHHHHHHhCeEEEeCCceEEEEEeCcCHHHHHHHhhcc
Confidence 79999999999999999999999999999983 47899999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhh-ccCCCCCeEEEE-eCCeEEEE
Q 015314 109 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKS-FTAKGGDVSWHI-HDERSLLA 186 (409)
Q Consensus 109 di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~-~~~~~~~V~i~~-~~~~~~l~ 186 (409)
||++|++|+++|++|||++|+|++|++|+|+++|+|||+++++..+.+++||++|+.. |. +.+|+|++ ++++++|+
T Consensus 653 dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~V~i~d~s~~~~~la 730 (965)
T 2gag_A 653 GYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTEWP--DLDVTCTSVTEQLATVA 730 (965)
T ss_dssp CCTTCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHTCT--TSCCEEEECTTTEEEEE
T ss_pred CCCcCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHHHHhcCC--CCcEEEEEccCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999852 21 24899965 78899999
Q ss_pred EeCCChHHHHhccc-cCCC--CCCCCceeEEEEE-CCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhcc-CCCceE
Q 015314 187 LQGPLAAPVLQHLT-KDDL--SKLYFGEFRILDI-NGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS-EGKVRL 261 (409)
Q Consensus 187 l~GP~a~~vL~~l~-~~~l--~~l~~~~~~~~~i-~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag-~~~~~~ 261 (409)
||||+|+++|++++ +.++ ..+||+++....+ ++.+++++|++|+||+||||+++++++.++|+.|+++| ++|+.|
T Consensus 731 l~GP~a~~~l~~~~~~~dl~~~~~~~~~~~~~~~~~g~~~~~~R~~~tGe~G~ei~~~~~~~~~l~~~L~~ag~~~g~~p 810 (965)
T 2gag_A 731 VVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGELAFEIAVPAWHGLRVWEDVYAAGEEFNITP 810 (965)
T ss_dssp EESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEECTTSCEEEEECCCSSSSCEEEEEEEGGGHHHHHHHHHHHHGGGTCEE
T ss_pred EECcCHHHHHHHhhCCCCCccccCCCceeEEEEEcCCCEEEEEeCCccCCCEEEEEEeHHHHHHHHHHHHhcchhcCcee
Confidence 99999999999997 4466 4589999999999 89999999999999999999999999999999999997 788999
Q ss_pred ecccchhhhhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcC-CCeEEEEEEeCC--CCCCC
Q 015314 262 TGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEG-PPVRRVGFFAGG--PPARS 338 (409)
Q Consensus 262 ~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g-~~rrlv~l~~~~--~~~~~ 338 (409)
+|+.+|++||||+|+|.||+|++++++|+|+||+|+|+|+| | |+|||+++|++++| ++||||+|.+++ .++..
T Consensus 811 ~G~~a~~~lRiE~G~~~~g~d~~~~~~P~e~gl~~~V~~~K---~-fiGqe~l~r~~~~g~~rrrlv~l~~~~~~~~~~~ 886 (965)
T 2gag_A 811 YGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLK---D-FIGNRSYSRADNAREDRKQLVSVLPVDKSLRLPE 886 (965)
T ss_dssp CCHHHHHHHHHHTTCCCTTTTCCSSCCTTTTTCGGGSCSSS---C-CTTGGGGGSHHHHCSSCEEEEEEEESSTTCCCCT
T ss_pred CCHHHHHHHHHhCCccCcccccCCCCCHHHCCchhhcCCCC---C-cCCHHHHHHHHhcCCCceEEEEEEEeCCCCCCCC
Confidence 99999999999999999999999999999999999999998 4 79999999999887 577899999976 46788
Q ss_pred CCeEecCCCc--------EeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCCCCCC
Q 015314 339 HSKVHDEQGN--------PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 408 (409)
Q Consensus 339 g~~v~~~~g~--------~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~~ 408 (409)
|++|+ .+|+ .||+|||++|||+++++||||||+.+++..|+.++|++.++.++|+|+++|||+|+..|.
T Consensus 887 g~~i~-~~g~~~~~~~~~~vG~vtS~~~sp~lg~~iala~v~~~~~~~g~~~~v~~~~~~~~a~v~~~pf~~~~~~r~ 963 (965)
T 2gag_A 887 GAALV-ASDALASEGITPMEGWVTSSYDSPNLGRTFGLALIKNGRNRIGEVLKTPVGDQLVDVVVSETVLYDPEGSRR 963 (965)
T ss_dssp TCEEE-ETTCCCBTTBCCCCEEEEEEEEETTTTEEEEEEEEETGGGCTTCEEEEEETTEEEEEEEECSCCSSTTCTTT
T ss_pred CCEEE-ECCccccccCCcceEEEEeeeEcCCCCceEEEEEEChhhcCCCCEEEEEECCEEEEEEEEccCCcCCCCccc
Confidence 99998 4553 899999999999999999999999998889999999999999999999999999988764
No 10
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=100.00 E-value=1.5e-71 Score=551.81 Aligned_cols=322 Identities=20% Similarity=0.259 Sum_probs=290.1
Q ss_pred ccccCHHH---HHHHHHhCeE-EEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEe
Q 015314 64 QYKDSIME---STLNCRQNGS-LFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV 139 (409)
Q Consensus 64 ~f~~~~~~---E~~a~r~~~~-l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~ 139 (409)
+|..++.+ ||+|+|++|+ |||+|||++|+|+||||.+|||+++||||++|++|+++|++|||+||+|++|++|+|+
T Consensus 17 ~~~~~~~~eh~e~~avr~~~g~l~DlS~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~ 96 (355)
T 3ttg_A 17 LYFQGMLTEVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNF 96 (355)
T ss_dssp CCCCCCCGGGTTHHHHHHSCEEECCSSCCCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEE
T ss_pred cccccchHHHHHHHHHHhcCeEEEeCCCcEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEE
Confidence 44334444 5699999999 9999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEE-eCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC
Q 015314 140 KDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI-HDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN 218 (409)
Q Consensus 140 ~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~-~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~ 218 (409)
+ |+|+|++++++.+.+++||++|+. | +.+|+|++ ++++++++||||+|+++|++++..+++.++|+.. .+
T Consensus 97 ~-d~~~lv~~a~~~~~~~~~L~~~~~-~---~~~V~i~d~s~~~~~lalqGP~a~~~l~~l~~~~l~~~~~~~~---~~- 167 (355)
T 3ttg_A 97 E-DKIALFPPAGTREEFVNHLKKYLF-F---RTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSSFRML---KN- 167 (355)
T ss_dssp T-TEEEEECCTTCHHHHHHHHHHTCC-T---TCCCEEEECGGGEEEEEEESTTHHHHHHHHSSSCCCSSEEEEC---TT-
T ss_pred C-CEEEEEECcccHHHHHHHHHHhcc-c---CCCeEEEECcCCEEEEEEECCcHHHHHHHhccCCCccCcceee---cc-
Confidence 5 799999999999999999999975 1 25899975 6789999999999999999998767777766433 22
Q ss_pred CeeEEE-EeeC-CCCC--CeeEEEeecccHHHHHHHHHhcc-CCCceEecccchhhhhhhcccccccCCCCCCCCccccc
Q 015314 219 GVSCFL-TRTG-YTGE--DGFEISVPSERAVDLAKAILEKS-EGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAG 293 (409)
Q Consensus 219 g~~~~l-~R~~-~~Ge--~G~el~~~~~~a~~l~~~L~~ag-~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~g 293 (409)
|..+.+ .|++ |+|| +||||++|++.+..+|+.|+++| +.++.|+|+.+|+++|||+|+|.+|+|++++++|+|+|
T Consensus 168 g~~~~~~~r~GsytGE~e~G~el~~p~~~a~~l~~~L~~aG~~~g~~~~G~~a~d~lRiEaG~p~~g~d~~~~~~P~Eag 247 (355)
T 3ttg_A 168 GGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAG 247 (355)
T ss_dssp SCEEEECCSBCGGGCBCCCEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHHTTCCCTTTTSSTTCCTTTTT
T ss_pred CcEEEEecCcccccCccCCeEEEEEeHHHHHHHHHHHHhhhhhcCCccCCHHHHHHHHHHCCCcccccccCCCCCHHHcC
Confidence 455666 7886 9996 99999999999999999999976 56899999999999999999999999999999999999
Q ss_pred cc-cccccccCcCCCCcCHHHHHhhHhcC-CCeEEEEEEeCCC-CCCCCCeEecC----CCcEeEEEEeeeecCCCCceE
Q 015314 294 LT-WAIGKRRRAEGGFLGAEKILKQLDEG-PPVRRVGFFAGGP-PARSHSKVHDE----QGNPIGEITSGGFSPCLKKNI 366 (409)
Q Consensus 294 l~-~~V~f~K~~~GcyiGqE~lar~~~~g-~~rrlv~l~~~~~-~~~~g~~v~~~----~g~~vG~vtS~~~s~~l~~~i 366 (409)
|. |+|+|+| |||+|||+++|++++| ++|||++|.+++. +|.+|++|+ . +|+.||+|||++|||+++++|
T Consensus 248 l~~~~V~f~K---gcfiGqE~lar~~~~G~~~rrlv~l~~~~~~~~~~g~~v~-~~~~~~g~~vG~VtS~~~sp~lg~~i 323 (355)
T 3ttg_A 248 LDSVGVSYNK---GCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVT-LFNPKDGNEAGILTRTSSSDILGSGI 323 (355)
T ss_dssp CHHHHCCSSS---CCCTTHHHHHHHHHTSCCCEEEEEEEECC---CCSCSSEE-EECTTTCCEEEEEEEEEEETTTTEEE
T ss_pred CCCCeEECCC---CCccCHHHHHHHHhcCCCceEEEEEEECCCCCCCCCCEEE-eccCCCCceEEEEEEeeECCCCCCEE
Confidence 99 9999999 9999999999999999 8999999999875 688999998 5 899999999999999999999
Q ss_pred EEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCc
Q 015314 367 AMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 401 (409)
Q Consensus 367 ala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~ 401 (409)
|||||+.+++++|+.++| |+.++|+|+++|||
T Consensus 324 aLa~v~~~~~~~g~~l~v---g~~~~a~v~~~Pf~ 355 (355)
T 3ttg_A 324 GLGYIKRNFSENGTELLL---PDAQLVRVHSLPFV 355 (355)
T ss_dssp EEEEEEGGGCSTTCEEEC---TTCCEEEEECSCCC
T ss_pred EEEEEehhhcCCCCEEEe---CCeeeEEEeCCCCC
Confidence 999999999999998876 66789999999996
No 11
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=100.00 E-value=1.4e-62 Score=484.80 Aligned_cols=302 Identities=15% Similarity=0.148 Sum_probs=268.7
Q ss_pred hCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHH
Q 015314 78 QNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDL 157 (409)
Q Consensus 78 ~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~ 157 (409)
-.+++||+|||++|+|+||||.+|||+++||||++|++|+++|++|||+||+|++|++|+|+++ +|+|++++++.+.++
T Consensus 29 ~~~~l~dlS~~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~-~~~lv~~a~~~~~~~ 107 (338)
T 1vly_A 29 LPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGD-GFAWIERRSVREPQL 107 (338)
T ss_dssp CCSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETT-EEEEEEEHHHHHHHH
T ss_pred CceEEEECCCcEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEeCC-cEEEEecchhhHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999965 899999999999999
Q ss_pred HHHHHHHhhccCCCCCeEEEEeCCeEEEEEeCCChHHHHhcccc-CCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeE
Q 015314 158 AHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTK-DDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFE 236 (409)
Q Consensus 158 ~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~-~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~e 236 (409)
+||++|+.. .+|+|++.+++++++||||+|+++|++++. .+...++| ..+++.++ .+.+ +||+|||
T Consensus 108 ~~L~~~~~~-----~~V~i~~~~~~~~lal~Gp~a~~~l~~~~~~~~~~~~~~-----~~~~g~~~--~~~~-tge~G~e 174 (338)
T 1vly_A 108 TELKKYAVF-----SKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQV-----VKEGATTL--LWFE-HPAERFL 174 (338)
T ss_dssp HHHHTTCSS-----SSCEEEEECSSEEEEEESTTHHHHHHTTSSCCCBTTBCE-----EEETTEEE--EEEC-SSSCEEE
T ss_pred HHHHHhhhh-----cceEEEEcCceEEEEEECCcHHHHHHhhcccCCCcccce-----eecCCeEE--EEec-CCCCcEE
Confidence 999999752 589997667899999999999999999865 23344554 45677653 3333 8999999
Q ss_pred EEeecccHHHHHHHHHhccCCCceEecccchhhhhhhcccccccCCCCCCCCccccccc--cccccccCcCCCCcCHHHH
Q 015314 237 ISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLT--WAIGKRRRAEGGFLGAEKI 314 (409)
Q Consensus 237 l~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~--~~V~f~K~~~GcyiGqE~l 314 (409)
++++++.+..+|+.|+++ +.++|+.+|+++|||+|+|.+|+|++++++|+|+||+ |+|+|+| |||+|||++
T Consensus 175 l~~~~~~~~~l~~~L~~~----~~~~g~~a~~~lRieaG~p~~g~d~~~~~~P~Eagl~~l~~V~f~K---gcyiGqE~l 247 (338)
T 1vly_A 175 IVTDEATANMLTDKLRGE----AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKK---GCYTGQEMV 247 (338)
T ss_dssp EEECHHHHHHHHHHHBTT----BEEECHHHHHHHHHHHTCCCCCGGGTTSCCGGGGTGGGTTCCCSSS---CCCTTHHHH
T ss_pred EEechHHHHHHHHHhhhc----CccCCHHHHHHHHHHcCCccccccccCCcChhhcCccccCCCcCCC---cccCCHHHH
Confidence 999999999999999885 7899999999999999999999999999999999999 8999999 999999999
Q ss_pred HhhHhcC-CCeEEEEEEeCC-CCCCCCCeEec-C--CCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCe
Q 015314 315 LKQLDEG-PPVRRVGFFAGG-PPARSHSKVHD-E--QGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 389 (409)
Q Consensus 315 ar~~~~g-~~rrlv~l~~~~-~~~~~g~~v~~-~--~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~ 389 (409)
+|++++| ++||++.+..++ .+|.+|++|+. . +++.||+|||++|+| ++++||||||+.++ .+|+.++| +|+
T Consensus 248 ar~~~~G~~rr~l~~l~~~~~~~~~~g~~v~~~~~~~g~~vG~VtS~~~~~-~g~~iala~v~~~~-~~g~~l~v--~g~ 323 (338)
T 1vly_A 248 ARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLE-DGQVVVQVVMNNDM-EPDSIFRV--RDD 323 (338)
T ss_dssp HHTTSTTSCCEEEEEEEECCSSCCCTTCCEEEEETTEEEEECEEEEEEECT-TSCEEEEEEEETTC-CTTCCEES--TTC
T ss_pred HHHHhcCCCceEEEEEecCCCCCCCCCCEeEeccCCCCccceEEEEEEECC-CCCEEEEEEEeccc-CCCCeEEE--CCC
Confidence 9999999 588888988864 46889999972 2 348999999999998 78999999999987 78988888 788
Q ss_pred EEeEEEEcCCCcCCC
Q 015314 390 AYDGNITKMPFVPTK 404 (409)
Q Consensus 390 ~~~a~v~~~Pf~~~~ 404 (409)
.++++|+++||+.++
T Consensus 324 ~~~a~v~~~Pf~~~~ 338 (338)
T 1vly_A 324 ANTLHIEPLPYSLEE 338 (338)
T ss_dssp SSCEEEECCSSCCC-
T ss_pred CceeEEeCCCCCCCC
Confidence 899999999998763
No 12
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=99.97 E-value=2e-30 Score=238.32 Aligned_cols=169 Identities=16% Similarity=0.152 Sum_probs=140.2
Q ss_pred HHHhCeEEEeCCCceeEEEEcCCHH---HHHhhcccccCCCCCCCcEEEEEEEcCCCce---eEeEEEEEecCCEEEEEE
Q 015314 75 NCRQNGSLFDVSHMCGLSLKGKDCV---PFLEKLVIADVAGLAPGTGTLTVFTNENGGS---IDDSVITKVKDDHIYLVV 148 (409)
Q Consensus 75 a~r~~~~l~DlS~~~~l~v~G~Da~---~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v---~~d~~V~r~~~d~~lL~~ 148 (409)
+.|++|+|||+|||+++.|+|+|+. ++|+.+++.++. ++.|++ ++|++|+|+++|+|+|++
T Consensus 27 ~~r~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~g~~l~-------------~~~g~v~~~~dDl~v~rl~~d~~llv~ 93 (210)
T 2gag_C 27 SVAGRVELREIAFTTQISLRCAPGTQAHAALAAATGAGLP-------------AKVGEVAGEAQGTAVLWLAPDEFLATS 93 (210)
T ss_dssp CBTTTBEEEECCSCEEEEEECCTTSHHHHHHHHHHSSCCC-------------CSTTBCEECTTSCEEEEEETTEEEEEE
T ss_pred cccCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCC-------------CCCCEEEEccCCEEEEEEcCCEEEEEe
Confidence 3799999999999999999999954 455555555553 344555 689999999999999999
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCCCeEEE-EeCCeEEEEEeCCChHHHHhccccCCCCC--CCCceeEEEEECCeeEEEE
Q 015314 149 NAGCRDKDLAHIEAHMKSFTAKGGDVSWH-IHDERSLLALQGPLAAPVLQHLTKDDLSK--LYFGEFRILDINGVSCFLT 225 (409)
Q Consensus 149 ~~~~~~~~~~~L~~~~~~~~~~~~~V~i~-~~~~~~~l~l~GP~a~~vL~~l~~~~l~~--l~~~~~~~~~i~g~~~~l~ 225 (409)
++ .+++.+||++++.. .+|.+. .++++++|.||||+|+++|+++++.|++. +||+++..+.+++.+|+++
T Consensus 94 na--~~~d~~~l~~~l~~-----~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~v~ 166 (210)
T 2gag_C 94 AE--NTELGGVLSAALGD-----APGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVANIPVLLW 166 (210)
T ss_dssp SS--CTTHHHHHHHHHTT-----SSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEE
T ss_pred Cc--HHHHHHHHHHhcCc-----CCEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEECCEEEEEE
Confidence 88 57899999998753 258884 57889999999999999999999878875 9999999999999999999
Q ss_pred eeCCCCCCeeEEEeecccHHHHHHHHHhcc-CCCceEecccc
Q 015314 226 RTGYTGEDGFEISVPSERAVDLAKAILEKS-EGKVRLTGLGA 266 (409)
Q Consensus 226 R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag-~~~~~~~G~~a 266 (409)
| |||+||||+++++++.+||+.|++++ ++|+.|++++.
T Consensus 167 R---tGEdGfEI~v~~~~A~~lw~~Ll~a~~~~G~~~~~~~~ 205 (210)
T 2gag_C 167 R---TGEQAWRIMPRASFTEHTVHWLVDAMSEFASEAVILEH 205 (210)
T ss_dssp E---EETTEEEEEEBGGGHHHHHHHHHHHHHGGGC-------
T ss_pred E---eCCCEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEeec
Confidence 9 78999999999999999999999997 78888888763
No 13
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=99.96 E-value=3.2e-29 Score=229.71 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=139.0
Q ss_pred HHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEE-EEcCCCce---eEeEEEEEecCCEEEEEEcCC
Q 015314 76 CRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTV-FTNENGGS---IDDSVITKVKDDHIYLVVNAG 151 (409)
Q Consensus 76 ~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~-~Ln~~G~v---~~d~~V~r~~~d~~lL~~~~~ 151 (409)
.+++|+|||+|||+++.|+|+||.+||+.+ +..|++ ++++.|++ ++|++|+|+++|+|+|++++
T Consensus 26 ~~~~vglfDvShmg~~~v~G~~a~~~l~~l-----------~~~~~~~l~~~~g~~~~~~dDl~v~rl~~d~~llv~na- 93 (206)
T 1x31_C 26 GERAVTLREVAFTTQLGLRAVPGSTGHAAL-----------AAATGVGLPAAVGEVAGDVSGTAVLWLGPDEFLLAAEE- 93 (206)
T ss_dssp STTCBEEEECCSCEEEEEECCTTSHHHHHH-----------HHHSSSCCCCSTTBEEECTTSCEEEEEETTEEEEEESS-
T ss_pred CCCcEEEEECCCCcEEEEEeCChhHHHHHH-----------HHHhCcCCCCCCCEEEEecCCEEEEEEcCCEEEEEcCc-
Confidence 447899999999999999999999666443 112222 34556666 89999999999999999988
Q ss_pred CcHHHHHHHHHHHhhccCCCCCeEEE-EeCCeEEEEEeCCChHHHHhccccCCCCC--CCCceeEEEEECCeeEEEEeeC
Q 015314 152 CRDKDLAHIEAHMKSFTAKGGDVSWH-IHDERSLLALQGPLAAPVLQHLTKDDLSK--LYFGEFRILDINGVSCFLTRTG 228 (409)
Q Consensus 152 ~~~~~~~~L~~~~~~~~~~~~~V~i~-~~~~~~~l~l~GP~a~~vL~~l~~~~l~~--l~~~~~~~~~i~g~~~~l~R~~ 228 (409)
.+++.+||++++.. .+|.+. .++++++|.||||+|+++|+++++.|+++ +||++++.+.+++.+|+++|+|
T Consensus 94 -~~~d~~~l~~~l~~-----~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~i~Rtg 167 (206)
T 1x31_C 94 -NPALLDTLQGALGQ-----EPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLWRTG 167 (206)
T ss_dssp -CTHHHHHHHHHHTT-----SSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEETTEEEEEEEEE
T ss_pred -hHHHHHHHHHhcCc-----CcEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEcCeEEEEEEcC
Confidence 57899999998753 257884 57889999999999999999999878875 9999999999999999999966
Q ss_pred CCCCCeeEEEeecccHHHHHHHHHhcc-CCCceE
Q 015314 229 YTGEDGFEISVPSERAVDLAKAILEKS-EGKVRL 261 (409)
Q Consensus 229 ~~Ge~G~el~~~~~~a~~l~~~L~~ag-~~~~~~ 261 (409)
|+||||+++++++.+||+.|++++ ++|+.+
T Consensus 168 ---EdGfEI~v~~~~A~~lw~~L~~ag~e~g~~~ 198 (206)
T 1x31_C 168 ---EQSWRILPRASFTEHTVHWLIDAMSEFSAAE 198 (206)
T ss_dssp ---TTEEEEECBGGGHHHHHHHHHHHHGGGGSCC
T ss_pred ---CCeEEEEEEHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999986 555543
No 14
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=97.47 E-value=0.0009 Score=60.64 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=71.2
Q ss_pred CeEEEeCCC-ceeEEEEcCCHHHHHhhcccccCCC--CCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHH
Q 015314 79 NGSLFDVSH-MCGLSLKGKDCVPFLEKLVIADVAG--LAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDK 155 (409)
Q Consensus 79 ~~~l~DlS~-~~~l~v~G~Da~~fLq~~~t~di~~--l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~ 155 (409)
.+.+.|+|+ ++.|.|.||.|.+.|+.++..|+.. ++.+++..+.+ +++ .++|.|.||+.|-|.++++.+..
T Consensus 111 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v----~g~--~v~v~RtGEdGfEI~v~~~~A~~ 184 (210)
T 2gag_C 111 PGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSV----ANI--PVLLWRTGEQAWRIMPRASFTEH 184 (210)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE----TTE--EEEEEEEETTEEEEEEBGGGHHH
T ss_pred CEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEE----CCE--EEEEEEeCCCEEEEEEEHHHHHH
Confidence 588999997 9999999999999999999889985 88899887654 232 58899999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 015314 156 DLAHIEAHMKSF 167 (409)
Q Consensus 156 ~~~~L~~~~~~~ 167 (409)
+.++|......+
T Consensus 185 lw~~Ll~a~~~~ 196 (210)
T 2gag_C 185 TVHWLVDAMSEF 196 (210)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHc
Confidence 999998775443
No 15
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=97.40 E-value=0.0011 Score=59.95 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=71.1
Q ss_pred CeEEEeCCC-ceeEEEEcCCHHHHHhhcccccCCC--CCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHH
Q 015314 79 NGSLFDVSH-MCGLSLKGKDCVPFLEKLVIADVAG--LAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDK 155 (409)
Q Consensus 79 ~~~l~DlS~-~~~l~v~G~Da~~fLq~~~t~di~~--l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~ 155 (409)
.+.+.|+|+ ++.|.|.||.|.+.|+.++..|+.. ++.+++..+.+ +++ .++|.|.+|+.|-|.++++.+..
T Consensus 109 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v----~g~--~v~i~RtgEdGfEI~v~~~~A~~ 182 (206)
T 1x31_C 109 PGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSL----ANI--PVLLWRTGEQSWRILPRASFTEH 182 (206)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEE----TTE--EEEEEEEETTEEEEECBGGGHHH
T ss_pred cEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEE----cCe--EEEEEEcCCCeEEEEEEHHHHHH
Confidence 478999997 8999999999999999999889875 88898887655 232 58899999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 015314 156 DLAHIEAHMKSF 167 (409)
Q Consensus 156 ~~~~L~~~~~~~ 167 (409)
+.++|......+
T Consensus 183 lw~~L~~ag~e~ 194 (206)
T 1x31_C 183 TVHWLIDAMSEF 194 (206)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHh
Confidence 999998775543
No 16
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.21 E-value=0.5 Score=47.60 Aligned_cols=67 Identities=9% Similarity=0.141 Sum_probs=54.1
Q ss_pred CCceeEEEEcCCHHHHHhhcccc-cCCCCCCCcEEEEEEEcC-CCceeEeEEEEEe-------cCCEEEEEEcCCC
Q 015314 86 SHMCGLSLKGKDCVPFLEKLVIA-DVAGLAPGTGTLTVFTNE-NGGSIDDSVITKV-------KDDHIYLVVNAGC 152 (409)
Q Consensus 86 S~~~~l~v~G~Da~~fLq~~~t~-di~~l~~g~~~yt~~Ln~-~G~v~~d~~V~r~-------~~d~~lL~~~~~~ 152 (409)
+.-++|+|+||+|.+.++.++.. .....++....|+.+.++ +|.++|++.|..+ +||-.=|-|.++.
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~ 97 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGI 97 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSS
T ss_pred ceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCH
Confidence 45789999999999999999864 344557888999999994 6899999999887 6776677776554
No 17
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=91.51 E-value=1 Score=44.26 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=61.9
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015314 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.|-+-+.+....|.|.||.|.+.|+.++..|++.++.++...+.+- | .++++.|. +++.|.|++++..+..
T Consensus 75 ~~gl~DvSh~g~i~V~G~DA~~fL~~l~tndv~~l~~G~~~yt~~ln~~G~i~dD~~V~rl---~~d~~~lv~~a~~~~~ 151 (393)
T 3gir_A 75 HAGLFDISHMKLIAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRL---AECRFMLVANAGNAQA 151 (393)
T ss_dssp SEEEEECTTSEEEEEESTTHHHHHHHHSSSCTTTSCTTBEEEEEEECTTCCEEEEEEEEEE---ETTEEEEEECGGGHHH
T ss_pred CeEEEeCCCcEEEEEECCCHHHHhhhhcccccccCCCCcEEEEEEECCCCcEEEEEEEEEe---cCCEEEEEECchhHHH
Confidence 5777555578999999999999999999889988887776654432 2 24677774 4788999999998888
Q ss_pred HHHHHHhc
Q 015314 247 LAKAILEK 254 (409)
Q Consensus 247 l~~~L~~a 254 (409)
+++.|...
T Consensus 152 ~~~~L~~~ 159 (393)
T 3gir_A 152 DFAELEKR 159 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888765
No 18
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=90.79 E-value=1.8 Score=42.20 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=58.7
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE-C--C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015314 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI-N--G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i-~--g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.|.+-+.+....|.|.||.+.+.|+.++..|+..++.++...+.+ + | .++++.| .+++.|.|.+++..+..
T Consensus 47 ~~gl~Dls~~g~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r---~~~d~~~lv~~a~~~~~ 123 (375)
T 1wsr_A 47 HCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTN---TSEGHLYVVSNAGCWEK 123 (375)
T ss_dssp SEEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEE---CTTSSEEEEECGGGHHH
T ss_pred CcEEEECCceEEEEEECCCHHHHHHHhcccccCcCCCCCEEEEEEECCCCeEEEEEEEEE---EcCCEEEEEeCCccHHH
Confidence 577755566899999999999999999988998887766554433 1 2 2356677 46778999999888887
Q ss_pred HHHHHHh
Q 015314 247 LAKAILE 253 (409)
Q Consensus 247 l~~~L~~ 253 (409)
+++.|..
T Consensus 124 ~~~~L~~ 130 (375)
T 1wsr_A 124 DLALMQD 130 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 19
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.34 E-value=0.81 Score=46.25 Aligned_cols=65 Identities=9% Similarity=0.190 Sum_probs=50.4
Q ss_pred CCceeEEEEcCCHHHHHhhcccc-----cCCCCCCCcEEEEEEEcCCCceeEeEEEEEe-------cCCEEEEEEcCC
Q 015314 86 SHMCGLSLKGKDCVPFLEKLVIA-----DVAGLAPGTGTLTVFTNENGGSIDDSVITKV-------KDDHIYLVVNAG 151 (409)
Q Consensus 86 S~~~~l~v~G~Da~~fLq~~~t~-----di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~-------~~d~~lL~~~~~ 151 (409)
+.-++|+|+||+|.+.++.++.. ++...++....|+.+.|+ |.++|++.|..+ +||-.=|.|.++
T Consensus 28 ~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg 104 (476)
T 3gee_A 28 GALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIALVFRAPRSFTAEQMVEFTCHGG 104 (476)
T ss_dssp CSEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESS-SCEEEEEEEEEEBTTBSSSSSCEEEEEEECC
T ss_pred cEEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecC-CcccceEEEEEecCCCCCCCCCeEEEECCCC
Confidence 45689999999999999999864 233346788999999986 899999999887 555555555443
No 20
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=90.10 E-value=1.5 Score=42.54 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=60.7
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE-C--C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015314 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI-N--G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i-~--g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.|-+-+.+....|.|.||.+.+.|+.++..|+..++.++...+.+ + | .++++.|. +++.|.|.++++.+..
T Consensus 46 ~~gl~dls~~~~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r~---~~d~~ll~~~a~~~~~ 122 (365)
T 1yx2_A 46 AAGLFDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQK---GENRYLLVINASNIDK 122 (365)
T ss_dssp SEEEEECTTSEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGHHH
T ss_pred CcEEEECCCeEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEE---eCCEEEEEECcccHHH
Confidence 577755566899999999999999999988888887766554433 1 2 23567774 5678999999999889
Q ss_pred HHHHHHhc
Q 015314 247 LAKAILEK 254 (409)
Q Consensus 247 l~~~L~~a 254 (409)
+++.|...
T Consensus 123 ~~~~L~~~ 130 (365)
T 1yx2_A 123 DLAWMKEH 130 (365)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 88888764
No 21
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=90.07 E-value=1.6 Score=42.21 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=60.7
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015314 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.+-+-+.+....|.|.||.+.+.|+.++..|+..++.++...+.+- | .++++.|. +++.|.|.+++..+..
T Consensus 42 ~~gl~dls~~~~i~v~G~da~~fL~~l~t~dv~~l~~g~~~yt~~ln~~G~i~~d~~v~r~---~~d~~ll~~~a~~~~~ 118 (364)
T 1wos_A 42 SVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKV---SPDEALMVVNAANIEK 118 (364)
T ss_dssp SCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGHHH
T ss_pred CeEEEECCCcEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEE---eCCEEEEEECcccHHH
Confidence 5777555568999999999999999999889988877765544331 2 23567774 5678999999999999
Q ss_pred HHHHHHhc
Q 015314 247 LAKAILEK 254 (409)
Q Consensus 247 l~~~L~~a 254 (409)
+++.|...
T Consensus 119 ~~~~L~~~ 126 (364)
T 1wos_A 119 DFNWIKSH 126 (364)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99888764
No 22
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=88.64 E-value=2 Score=42.24 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=58.3
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE-C--C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015314 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI-N--G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i-~--g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.|.+-+......|.|.||.+.+.|+.++..|+..++.++...+.+ + | .++++.|. +++.|.|.+++..+..
T Consensus 46 ~~gl~dls~~~~i~v~G~Da~~fLq~l~t~dv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~---~~d~~ll~~~a~~~~~ 122 (401)
T 1v5v_A 46 AVGIFDVSHMGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNM---GNNEYLMICDSDAFEK 122 (401)
T ss_dssp SCEEEECTTSEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECTTTHHH
T ss_pred CEEEEECCCcEEEEEECCCHHHHHHHhhccccCcCCCCCEEEEEEECCCCcEEEEEEEEEe---cCCEEEEEECcccHHH
Confidence 577755566899999999999999999988988887766554332 2 2 13566774 5678999999988888
Q ss_pred HHHHH
Q 015314 247 LAKAI 251 (409)
Q Consensus 247 l~~~L 251 (409)
+++.|
T Consensus 123 ~~~~L 127 (401)
T 1v5v_A 123 LYAWF 127 (401)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88887
No 23
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=88.62 E-value=2.1 Score=41.00 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=59.1
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE-C--C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015314 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI-N--G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i-~--g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.|.+-+.+....|.|.||.|.+.|+.++..|+..++.++....-+ + | .++++.|. ++ .|.+.++++.+..
T Consensus 30 ~~~l~dlS~~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~---~~-~~~lv~~a~~~~~ 105 (338)
T 1vly_A 30 PLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRD---GD-GFAWIERRSVREP 105 (338)
T ss_dssp CSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEE---TT-EEEEEEEHHHHHH
T ss_pred ceEEEECCCcEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEe---CC-cEEEEecchhhHH
Confidence 366645567899999999999999999988988887766554432 2 2 24677774 44 8999999888888
Q ss_pred HHHHHHhc
Q 015314 247 LAKAILEK 254 (409)
Q Consensus 247 l~~~L~~a 254 (409)
+++.|...
T Consensus 106 ~~~~L~~~ 113 (338)
T 1vly_A 106 QLTELKKY 113 (338)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88888665
No 24
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=88.34 E-value=2.2 Score=41.69 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=59.6
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCC-CCceeEEEEE-C--C---eeEEEEeeCCCCCCeeEEEeecccHH
Q 015314 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKL-YFGEFRILDI-N--G---VSCFLTRTGYTGEDGFEISVPSERAV 245 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l-~~~~~~~~~i-~--g---~~~~l~R~~~~Ge~G~el~~~~~~a~ 245 (409)
.|-+-+.+....|.|.||.+.+.|+.++..|++.+ +.++.....+ + | .++++.|. +++.|.|.+++..+.
T Consensus 55 ~~gl~DlS~~g~i~v~G~DA~~fLq~l~t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~---~~d~~~lv~~a~~~~ 131 (381)
T 1vlo_A 55 DAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYF---TEDFFRLVVNSATRE 131 (381)
T ss_dssp SCEEEECTTSEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGHH
T ss_pred CeEEEECCCcEEEEEECCCHHHHHHHhccccccccCCCCCEEEEEEECCCCcEEEEEEEEEE---eCCEEEEEECcccHH
Confidence 57775545689999999999999999998888888 6666554433 1 2 23567774 567899999998888
Q ss_pred HHHHHHHhc
Q 015314 246 DLAKAILEK 254 (409)
Q Consensus 246 ~l~~~L~~a 254 (409)
.+++.|...
T Consensus 132 ~~~~~L~~~ 140 (381)
T 1vlo_A 132 KDLSWITQH 140 (381)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 25
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=86.12 E-value=2 Score=41.71 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=60.4
Q ss_pred hCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEe---cCCEEEEEEcC-CCc
Q 015314 78 QNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDDHIYLVVNA-GCR 153 (409)
Q Consensus 78 ~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~---~~d~~lL~~~~-~~~ 153 (409)
-+|-+-+ ..++.|.|.||.|.+.|+.++..|++.++..++..+-+ .| .+++|.|. +++.|-|.+++ +.+
T Consensus 141 ~~V~i~~-~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i---~g---~~~~i~R~gytGE~G~Ei~~~~~~~a 213 (369)
T 3tfi_A 141 FDVKIVE-PVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDF---EG---TKHLIARSGWSKQGGYEVYVENTQSG 213 (369)
T ss_dssp CCCEEEC-CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTBEEEEEE---TT---EEEEEESCCSSSSCEEEEEECSHHHH
T ss_pred CeEEEEE-CCEEEEEEECccHHHHHHhhcCCchhhCCCceEEEEEE---CC---eEEEEEeCccCCCCeEEEEEecHHHH
Confidence 3677776 67899999999999999999888888777766654433 23 24678885 57899999987 777
Q ss_pred HHHHHHHHHH
Q 015314 154 DKDLAHIEAH 163 (409)
Q Consensus 154 ~~~~~~L~~~ 163 (409)
..+.+.|...
T Consensus 214 ~~lw~~L~~a 223 (369)
T 3tfi_A 214 QKLYDHLFEV 223 (369)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777777654
No 26
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=84.78 E-value=3.4 Score=39.85 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=59.4
Q ss_pred CeE-EEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHH
Q 015314 173 DVS-WHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAV 245 (409)
Q Consensus 173 ~V~-i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~ 245 (409)
.|- +-+......|.|.||.|.+.|+.++..|++.++.++.....+- | .++++.|.+ +.|.|.+++..+.
T Consensus 35 ~~g~l~DlS~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~----d~~~lv~~a~~~~ 110 (355)
T 3ttg_A 35 KFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFE----DKIALFPPAGTRE 110 (355)
T ss_dssp SCEEECCSSCCCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEET----TEEEEECCTTCHH
T ss_pred cCeEEEeCCCcEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEEC----CEEEEEECcccHH
Confidence 566 5443467899999999999999999889988877766544332 2 246777753 5899999999888
Q ss_pred HHHHHHHhc
Q 015314 246 DLAKAILEK 254 (409)
Q Consensus 246 ~l~~~L~~a 254 (409)
.+++.|...
T Consensus 111 ~~~~~L~~~ 119 (355)
T 3ttg_A 111 EFVNHLKKY 119 (355)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 998888664
No 27
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=81.38 E-value=4.5 Score=43.48 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=61.1
Q ss_pred C-eEEEeCCC-ceeEEEEcCCHHHHHhhcccccCCC--CCCCcEEEEEEEcCCCceeEeEEEEEec---CCEEEEEEcCC
Q 015314 79 N-GSLFDVSH-MCGLSLKGKDCVPFLEKLVIADVAG--LAPGTGTLTVFTNENGGSIDDSVITKVK---DDHIYLVVNAG 151 (409)
Q Consensus 79 ~-~~l~DlS~-~~~l~v~G~Da~~fLq~~~t~di~~--l~~g~~~yt~~Ln~~G~v~~d~~V~r~~---~d~~lL~~~~~ 151 (409)
+ |.+-|+|. +..|.|.||.|.+.|+.++..|+.. ++..++..+.+ .| ..++|.|.+ ++.|.|.++++
T Consensus 591 ~~v~i~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~---~g---~~~~~~r~~~tge~g~ei~~~~~ 664 (830)
T 1pj5_A 591 DWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVI---GG---IPVTAMRLSYVGELGWELYTSAD 664 (830)
T ss_dssp CCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE---TT---EEEEEECCCTTSSSEEEEEEEHH
T ss_pred CeEEEEEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEE---CC---EEEEEEECcccCCCcEEEEecHH
Confidence 5 99999975 8999999999999999998888743 66676655433 23 257788874 78899999887
Q ss_pred CcHHHHHHHHHH
Q 015314 152 CRDKDLAHIEAH 163 (409)
Q Consensus 152 ~~~~~~~~L~~~ 163 (409)
.+..+.+.|...
T Consensus 665 ~~~~l~~~l~~a 676 (830)
T 1pj5_A 665 NGQRLWDALWQA 676 (830)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 777777777654
No 28
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=81.28 E-value=2.1 Score=43.19 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=43.3
Q ss_pred CCceeEEEEcCCHHHHHhhccc-ccCCCCCCCcEEEEEEEcCCCceeEeEEEEEe
Q 015314 86 SHMCGLSLKGKDCVPFLEKLVI-ADVAGLAPGTGTLTVFTNENGGSIDDSVITKV 139 (409)
Q Consensus 86 S~~~~l~v~G~Da~~fLq~~~t-~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~ 139 (409)
+.-++|+|+||+|.+.++.++. .+. .++..+.|+.+.| +|.++|++.|..+
T Consensus 46 ~~i~iiRiSG~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~iDe~~v~~~ 97 (482)
T 1xzp_A 46 GAIAILRLSGPDSWKIVQKHLRTRSK--IVPRKAIHGWIHE-NGEDVDEVVVVFY 97 (482)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEESSC--CCBTBCEEEEECC-SSCCCCEEEEEEE
T ss_pred ceEEEEEcccHHHHHHHHHHhcCCCC--CCCceEEEEEEec-CCeeeeEEEEEEE
Confidence 4568999999999999999985 222 3678899999999 8999999999876
No 29
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=80.36 E-value=6.8 Score=43.00 Aligned_cols=78 Identities=22% Similarity=0.191 Sum_probs=59.8
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015314 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.|-+-+.+....|.|+||.+.+.|+.++..|++.++.++.....+- | .++++.|. +++.|.|.++...+..
T Consensus 623 ~~gl~D~S~~g~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r~---~~~~~~l~~~~~~~~~ 699 (965)
T 2gag_A 623 SVGMLDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRL---AEDRFLLHTTTGGAAD 699 (965)
T ss_dssp SCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECTTTHHH
T ss_pred CeEEEeCCceEEEEEeCcCHHHHHHHhhccCCCcCCCCCEEEEEEECCCCcEEEEEEEEEE---eCCEEEEEECcccHHH
Confidence 6777555678999999999999999999889988887766544331 2 24567774 5778999999888888
Q ss_pred HHHHHHh
Q 015314 247 LAKAILE 253 (409)
Q Consensus 247 l~~~L~~ 253 (409)
+++.|..
T Consensus 700 ~~~~l~~ 706 (965)
T 2gag_A 700 VLDWLEE 706 (965)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777754
No 30
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=76.87 E-value=21 Score=35.63 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=51.5
Q ss_pred CeEEEEEeCCChHHHHhccccC-CCCCCCCceeEEEEECC-------eeEEEEe----eCCCCCCeeEEEeecc--cHHH
Q 015314 181 ERSLLALQGPLAAPVLQHLTKD-DLSKLYFGEFRILDING-------VSCFLTR----TGYTGEDGFEISVPSE--RAVD 246 (409)
Q Consensus 181 ~~~~l~l~GP~a~~vL~~l~~~-~l~~l~~~~~~~~~i~g-------~~~~l~R----~~~~Ge~G~el~~~~~--~a~~ 246 (409)
..+++.|.||+|.+++++++.. ++...+........+-+ -++++.. .+||||+-.||+|.-. ....
T Consensus 23 ~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~~ 102 (462)
T 3geh_A 23 SVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQ 102 (462)
T ss_dssp SCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHHH
T ss_pred eEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHHH
Confidence 4688999999999999999853 22233333333333321 1233333 3799999999999753 4466
Q ss_pred HHHHHHhccCCCceEecc
Q 015314 247 LAKAILEKSEGKVRLTGL 264 (409)
Q Consensus 247 l~~~L~~ag~~~~~~~G~ 264 (409)
+.+.+.+. |++++-.
T Consensus 103 ~l~~~~~~---g~r~A~p 117 (462)
T 3geh_A 103 VLQLCLES---GARLAQP 117 (462)
T ss_dssp HHHHHHHT---TCEECCT
T ss_pred HHHHHHHC---CCeecCC
Confidence 77777775 4555543
No 31
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=72.15 E-value=25 Score=35.18 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=48.7
Q ss_pred CeEEEEEeCCChHHHHhccccC-----CCCCCCCceeEEEEEC--C---eeEEE--Ee--eCCCCCCeeEEEeeccc--H
Q 015314 181 ERSLLALQGPLAAPVLQHLTKD-----DLSKLYFGEFRILDIN--G---VSCFL--TR--TGYTGEDGFEISVPSER--A 244 (409)
Q Consensus 181 ~~~~l~l~GP~a~~vL~~l~~~-----~l~~l~~~~~~~~~i~--g---~~~~l--~R--~~~~Ge~G~el~~~~~~--a 244 (409)
..+++.|.||+|.+++++++.. ++...+........+- + -.+++ ++ .+||||+-.|++|.-.. .
T Consensus 29 ~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg~~v~ 108 (476)
T 3gee_A 29 ALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVVV 108 (476)
T ss_dssp SEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESSSCEEEEEEEEEEBTTBSSSSSCEEEEEEECCHHHH
T ss_pred EEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecCCcccceEEEEEecCCCCCCCCCeEEEECCCCHHHH
Confidence 4789999999999999998853 1122222222222221 1 02333 33 37999999999997643 3
Q ss_pred HHHHHHHHhccCCCceEec
Q 015314 245 VDLAKAILEKSEGKVRLTG 263 (409)
Q Consensus 245 ~~l~~~L~~ag~~~~~~~G 263 (409)
..+.+.+.+. |++++-
T Consensus 109 ~~~l~~~~~~---g~r~A~ 124 (476)
T 3gee_A 109 GRVLRLMLDN---GCRLAE 124 (476)
T ss_dssp HHHHHHHHHT---TCEECC
T ss_pred HHHHHHHHHC---CCeecC
Confidence 5566666665 455554
No 32
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=48.62 E-value=86 Score=23.78 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=38.9
Q ss_pred CeEEEEEEe-CCCCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEE
Q 015314 323 PVRRVGFFA-GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNIT 396 (409)
Q Consensus 323 ~rrlv~l~~-~~~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~ 396 (409)
.|-++.+.. ++.+++-|+.|.+.+++.+|.|-.. +.+||+-. .+...+.|.+.++ ..+++.
T Consensus 8 ~~~ll~l~~~dG~plPfGA~V~d~~g~~~giVG~~----------G~vyl~gl--~~~g~L~V~Wg~~-~~C~i~ 69 (94)
T 3l48_A 8 KRLFAILRLADGSQPPFGASVTSEKGRELGMVADE----------GLAWLSGV--TPGETLSVNWDGK-IQCQVN 69 (94)
T ss_dssp CCEEEEEEETTSCCCCTTCEEECTTCCEEEEBCGG----------GEEEESSC--CTTCEEEEECSSS-EEEEEE
T ss_pred EEEEEEEECCCCCcCCCccEEEcCCCceEEEECCC----------CEEEEECC--CCCCEEEEEECCC-CeEEEE
Confidence 344556665 4556678999986678888877433 35677754 2345788887653 345555
No 33
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=33.06 E-value=1.1e+02 Score=23.84 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=36.3
Q ss_pred CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccC--CCCEEEEEEC
Q 015314 334 PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHK--AGTKVKIEVR 387 (409)
Q Consensus 334 ~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~--~g~~l~v~~~ 387 (409)
..|.-|++|++.+.+.||.|-.. |.|. +.+....-+.....+ .|+.+.|+..
T Consensus 29 ~vP~~na~Vy~enk~~IGKV~DI-fGPV-~~pY~sVKp~~~s~~~~~G~klYI~~~ 82 (104)
T 2hvy_B 29 WVPSLNDRVVDKRLQFVGIVKDV-FGPV-KMPYVAIKPKVSNPEIYVGEVLYVDER 82 (104)
T ss_dssp SCCCTTCEEECTTCCEEEEEEEE-EEES-SSCEEEEEECSSCGGGGTTCEEEECC-
T ss_pred CCCCCCCEeEcCCCCEeEEEEEE-ECCC-CCcEEEEEecCCCccccCCCEEEEcCc
Confidence 46778999998889999999865 7887 345544444432224 7888988644
No 34
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=27.69 E-value=98 Score=23.53 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=27.0
Q ss_pred CCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcC
Q 015314 338 SHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKS 373 (409)
Q Consensus 338 ~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~ 373 (409)
.|.+|++.+|+.+|.|....+.+..|+ |.-..|..
T Consensus 28 ~Gk~Vin~dG~~LG~V~Dv~iD~~~G~-I~~lvl~~ 62 (97)
T 1pm3_A 28 VGKEVLDSSAKVIGKVKDVEVDIESQA-IESLVLGK 62 (97)
T ss_dssp SSCEEECTTSCEEEEEEEEEEETTTTE-EEEEEEEC
T ss_pred CCCEeECCCCCEEeEEEEEEEECCCCE-EEEEEEcC
Confidence 578898889999999999999987664 44444444
No 35
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=24.42 E-value=1.3e+02 Score=22.37 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccC--CCCEEEE
Q 015314 334 PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHK--AGTKVKI 384 (409)
Q Consensus 334 ~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~--~g~~l~v 384 (409)
..|.-|++|++.+.+.||.|-.. +.|. +.+....-+....++ .|+.+.+
T Consensus 29 ~~P~~na~Vy~e~~~~IGkV~dI-fGPv-~~pY~sVk~~~~~~~s~~g~klYi 79 (82)
T 2ey4_C 29 WVPSLNDRVVDKRLQFVGIVKDV-FGPV-KMPYVAIKPKVSNPEIYVGEVLYV 79 (82)
T ss_dssp SCCCTTCEEECTTCCCCEEEEEE-EEES-SSCEEEEEECSSSCSTTBTCCCEE
T ss_pred CCCCCCCEeEcCCCCEeEEEEEE-ECCC-CCcEEEEEeCCCChhhcCCCeEEe
Confidence 46788999998888999999865 7776 445544444432122 5655555
No 36
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=20.66 E-value=4.1e+02 Score=26.21 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=43.3
Q ss_pred CeEEEEEeCCChHHHHhcccc-CCCCCCCCceeEEEEEC--C-----eeEEEEe--eCCCCCCeeEEEeeccc--HHHHH
Q 015314 181 ERSLLALQGPLAAPVLQHLTK-DDLSKLYFGEFRILDIN--G-----VSCFLTR--TGYTGEDGFEISVPSER--AVDLA 248 (409)
Q Consensus 181 ~~~~l~l~GP~a~~vL~~l~~-~~l~~l~~~~~~~~~i~--g-----~~~~l~R--~~~~Ge~G~el~~~~~~--a~~l~ 248 (409)
..+++.|.||+|.+++++++. ..+ .+........+- + +-+.+.+ .+||||+-.|+.+.-.. ...+.
T Consensus 47 ~i~iiRiSG~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~iDe~~v~~~~~p~Sft~Ed~ve~~~hGg~~v~~~~l 124 (482)
T 1xzp_A 47 AIAILRLSGPDSWKIVQKHLRTRSK--IVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLL 124 (482)
T ss_dssp SCEEEEEESSSHHHHHHTTEEESSC--CCBTBCEEEEECCSSCCCCEEEEEEECTTSSSSSSCEEEEEECSCHHHHHHHH
T ss_pred eEEEEEcccHHHHHHHHHHhcCCCC--CCCceEEEEEEecCCeeeeEEEEEEEeCCCcCCCCCEeeecCcCcHHHHHHHH
Confidence 478999999999999999985 211 122222222221 1 1122232 46999999999986532 34555
Q ss_pred HHHHhc
Q 015314 249 KAILEK 254 (409)
Q Consensus 249 ~~L~~a 254 (409)
+.|+..
T Consensus 125 ~~l~~~ 130 (482)
T 1xzp_A 125 DLFLKS 130 (482)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 666653
Done!