BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015317
         (409 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GO8|A Chain A, Crystal Structure Of Yqjz_bacsu From Bacillus Subtilis.
           Northeast Structural Genomics Target Sr435
          Length = 122

 Score = 29.3 bits (64), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 231 GADVKLVKWNSSPHVGHYRHYPIDYKAAVTELLGKAGAVYSQRIQRLEREKMGLEGTHD 289
           G  + +  W+S   + H+RH+  +++AA  +        Y+ R+ +++R+++  E T+D
Sbjct: 57  GRGITVSYWDSXDAINHWRHH-TEHQAAKEKGRSVWYESYAVRVAKVDRQRLFQENTND 114


>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
 pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
          Length = 53

 Score = 28.1 bits (61), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 27 AWMSSEERQLKRFVQLYSSLGWNSLICHSQFLN 59
          AW+  E++ L+  V+ Y    W+ ++ H +F N
Sbjct: 4  AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,790,547
Number of Sequences: 62578
Number of extensions: 483074
Number of successful extensions: 1252
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 5
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)