BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015317
(409 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBP5|TMM53_BOVIN Transmembrane protein 53 OS=Bos taurus GN=TMEM53 PE=2 SV=1
Length = 294
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 45/266 (16%)
Query: 11 GRKERGGRREGIVVVFAWMSSEERQLKRFVQLYSSLGWNSLICHSQFLNMFFPEKAESLA 70
G KE G R +V++ W ++ L ++ +Y G + + + +FF E +
Sbjct: 27 GGKE-AGTRLPLVILLGWGGCSDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSETLGIPS 85
Query: 71 LDVLKELVEELKFG----PCPVVFASFSGGPKACMYK----VLQITEGICEAKLSLDDRQ 122
L VL + + EL F P++F FS +Y+ +LQ + C ++
Sbjct: 86 LRVLAQKLLELLFDYEVEKEPLLFHVFSNA-GVMLYRYVLELLQTHQRFCHLRVV----- 139
Query: 123 LVRDCFSGQIYDSSPVDFTSDLGARFAVHPSVLNMSHPP-----------RLVSRIANGI 171
G I+DS P D ++ LGA A+ + + H P LV+ + + +
Sbjct: 140 -------GTIFDSGPGD-SNLLGALRAL---AVVLEHRPAALRLLLLVAFTLVAFLFHVL 188
Query: 172 ASGLDAFFLNRFESHRAEYWQTLYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLG 231
+ L A F F Y + L ++ R+ P L L S D++ + + +
Sbjct: 189 LAPLTALFHTHF------YDRLLDAASRW--PELYLYSRADEVVLARDVERMVEARLAHQ 240
Query: 232 ADVKLVKWNSSPHVGHYRHYPIDYKA 257
V+ V + SS HV H R YP Y
Sbjct: 241 VLVRSVDFVSSAHVSHLRDYPTYYTT 266
>sp|Q6P2H8|TMM53_HUMAN Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1
Length = 277
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 25/254 (9%)
Query: 19 REGIVVVFAWMSSEERQLKRFVQLYSSLGWNSLICHSQFLNMFFPEKAESLALDVLKELV 78
R+ +V++ W +++ L ++ +Y G + + + +FF E +L VL + +
Sbjct: 34 RQPVVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKL 93
Query: 79 EELKFG----PCPVVFASFSGGPKACMYKVLQITEGICEAKLSLDDRQLVRDCFSGQIYD 134
EL F P++F FS G VL++ L R+ R G I+D
Sbjct: 94 LELLFDYEIEKEPLLFHVFSNGGVMLYRYVLEL----------LQTRRFCRLRVVGTIFD 143
Query: 135 SSPVDFTSDLGARFAVHPSVLNMSHPPRLVSRIANGIASGLD-----AFFLNRFESHRAE 189
S+P D S+L ++L + + + A F +H +
Sbjct: 144 SAPGD--SNLVGALRALAAILERRAAMLRLLLLVAFALVVVLFHVLLAPITALFHTHFYD 201
Query: 190 YWQTLYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKWNSSPHVGHYR 249
Q S P L L S D++ + I + + V + SS HV H R
Sbjct: 202 RLQDAGSR----WPELYLYSRADEVVLARDIERMVEARLARRVLARSVDFVSSAHVSHLR 257
Query: 250 HYPIDYKAAVTELL 263
YP Y + + +
Sbjct: 258 DYPTYYTSLCVDFM 271
>sp|Q9D0Z3|TMM53_MOUSE Transmembrane protein 53 OS=Mus musculus GN=Tmem53 PE=2 SV=1
Length = 276
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 21/264 (7%)
Query: 10 WGRKERGGRREG-----IVVVFAWMSSEERQLKRFVQLYSSLGWNSLICHSQFLNMFFPE 64
W +K R G +E +V++ W ++ L ++ +Y G + + + +FF E
Sbjct: 18 WSQKNRQGGKEAGKQQPVVILLGWGGCRDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSE 77
Query: 65 KAESLALDVLKELVEELKFG----PCPVVFASFSGGPKACMYKVLQITEGICEAKLSLDD 120
+L V+ + + EL F P++F FS VL++ L
Sbjct: 78 SLGIPSLRVIAQKLLELLFDYEIEREPLLFHVFSNAGVMLYRYVLEL----------LQT 127
Query: 121 RQLVRDC-FSGQIYDSSPVDFTSDLGARFAVHPSVLNMSHPPRLVSRIANGIASGLDAFF 179
Q R G I+DS P D ++ +GA A+ + RL+ A + L F
Sbjct: 128 HQRFRHLHVVGTIFDSGPGD-SNLIGALRALATILERRPAVLRLLLLAAFALVVILFHFL 186
Query: 180 LNRFESHRAEYWQTLYSSVRFGAPYLILCSEDDDLAPYQVIYNFAQRLCDLGADVKLVKW 239
L F + ++ P L L S D + + + + V+ V +
Sbjct: 187 LAPFTALFHTHFYDRLQDSGSCWPELYLYSRADKVVSARDVERMVEARLAHQVMVRGVDF 246
Query: 240 NSSPHVGHYRHYPIDYKAAVTELL 263
SS HV H R YP Y + + +
Sbjct: 247 VSSAHVSHLRDYPTYYTSLCVDFM 270
>sp|A0LV00|MIAB_ACIC1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
GN=miaB PE=3 SV=1
Length = 497
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 137 PVDFTSDLGARFAVHPSVLNMSHPPRLVSRIANGIASGLDAFFLNRFESHRAEYWQTLYS 196
P DFT D+ A A P+V+ H P + SG DA S+R E + + S
Sbjct: 261 PRDFTDDVIAAMAETPNVMPQLHMP---------LQSGSDAVLRRMRRSYRKEKYLDIIS 311
Query: 197 SVRFGAPYLILCSEDDDLAPYQVIYNFAQRL 227
VR P + ++ P + +FA+ L
Sbjct: 312 RVRSAIPDAAITTDIIVGFPGETEDDFAETL 342
>sp|Q6ME42|RPOA_PARUW DNA-directed RNA polymerase subunit alpha OS=Protochlamydia
amoebophila (strain UWE25) GN=rpoA PE=3 SV=1
Length = 371
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 265 KAGAVYSQRIQRLEREKMGLEGTHDDMADPMYNLSKAAVS--PTRSF-RGTSLVPSDHFV 321
+A A+ S R++ + E M +EG +DM + + N A + PT R T ++ V
Sbjct: 54 EAPAIISVRVEGIPHEYMAIEGISEDMTNIILNFKGALLRKLPTEETPRDTRILTKVVEV 113
Query: 322 LPSSLEYYDGRDVGSLQDEHKERLIHLPNP 351
L+ G+ +LQD +E + NP
Sbjct: 114 TQDDLDRNQGQYCVTLQDVVQEGNFEIVNP 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,610,922
Number of Sequences: 539616
Number of extensions: 6918533
Number of successful extensions: 15141
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15141
Number of HSP's gapped (non-prelim): 7
length of query: 409
length of database: 191,569,459
effective HSP length: 120
effective length of query: 289
effective length of database: 126,815,539
effective search space: 36649690771
effective search space used: 36649690771
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)