Query 015318
Match_columns 409
No_of_seqs 176 out of 1357
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zy9_A Mg2+ transporter MGTE; 20.9 55 0.0019 32.9 3.2 51 48-98 414-467 (473)
2 2l9u_A Receptor tyrosine-prote 8.3 2.4E+02 0.0082 17.9 2.2 12 355-366 19-30 (40)
3 1vf5_F Protein PET M; photosyn 8.1 4E+02 0.014 16.9 3.3 25 316-340 5-29 (35)
4 2ks1_B Epidermal growth factor 7.7 3.3E+02 0.011 18.1 2.9 17 55-71 21-37 (44)
5 2l2t_A Receptor tyrosine-prote 7.6 5.3E+02 0.018 17.1 4.2 17 55-71 20-36 (44)
6 2k21_A Potassium voltage-gated 7.6 5.3E+02 0.018 21.3 4.7 35 120-154 49-83 (138)
7 4ev6_A Magnesium transport pro 7.1 4.7E+02 0.016 24.5 5.0 18 319-336 282-299 (339)
8 3j1r_A Archaeal adhesion filam 7.0 4E+02 0.014 15.7 2.6 17 351-367 8-24 (26)
9 1q90_M Cytochrome B6F complex 6.7 5E+02 0.017 16.9 3.3 24 316-339 6-29 (39)
10 2lat_A Dolichyl-diphosphooligo 6.6 4.6E+02 0.016 16.8 3.1 17 391-407 8-24 (37)
No 1
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=20.86 E-value=55 Score=32.94 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhHhhhccccccc---cCCCchhHHhhhhhchhHHHhhh
Q 015318 48 KFVAIASILISGIVGVAIPLIGKHRRFL---KTDGSLFVATKAFAAGVILATGF 98 (409)
Q Consensus 48 Ki~~l~iIl~~Sllg~~lPl~~~~~~~~---~~~~~vls~~~~FggGV~Lataf 98 (409)
-+..++.+++++++|+++|++++|+... -..+.+.++.-.+|--+++++|-
T Consensus 414 ~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~~s~p~itt~~D~~g~~~~~~~a~ 467 (473)
T 2zy9_A 414 GVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVAR 467 (473)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 3444455777888888888888776321 11234444555555555555543
No 2
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.26 E-value=2.4e+02 Score=17.90 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHH
Q 015318 355 LDSMSAGILVYM 366 (409)
Q Consensus 355 l~~laaGtflYv 366 (409)
..-+-+|||||-
T Consensus 19 if~~lg~tflyw 30 (40)
T 2l9u_A 19 IFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhCceeEEE
Confidence 344567888884
No 3
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=8.08 E-value=4e+02 Score=16.88 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhcc
Q 015318 316 ATLMACFFALTTPVGISIGTAAASV 340 (409)
Q Consensus 316 ~~~~~~~fsl~tPiG~~iG~~i~~~ 340 (409)
++....+....+++|.++|..+...
T Consensus 5 If~~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 5 MLYAALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhee
Confidence 3445666677889999999887654
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.68 E-value=3.3e+02 Score=18.08 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=6.8
Q ss_pred HHHHHHHHhhHhhhccc
Q 015318 55 ILISGIVGVAIPLIGKH 71 (409)
Q Consensus 55 Il~~Sllg~~lPl~~~~ 71 (409)
+++..++...+=++++|
T Consensus 21 v~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33333334333344444
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.64 E-value=5.3e+02 Score=17.09 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=7.6
Q ss_pred HHHHHHHHhhHhhhccc
Q 015318 55 ILISGIVGVAIPLIGKH 71 (409)
Q Consensus 55 Il~~Sllg~~lPl~~~~ 71 (409)
+++..++....=++.||
T Consensus 20 v~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 44444444444444544
No 6
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=7.59 E-value=5.3e+02 Score=21.30 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=25.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhHhhhhcccCc
Q 015318 120 SKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLT 154 (409)
Q Consensus 120 ~~yP~a~li~~~Gf~lv~~iE~l~~~~~~~~~~~~ 154 (409)
.+|-.-++++++|||-++.+-.++.....|+..+.
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk~E~s 83 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS 83 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhhcccc
Confidence 44566788999999999999888776655554443
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=7.06 E-value=4.7e+02 Score=24.49 Aligned_cols=18 Identities=6% Similarity=-0.095 Sum_probs=8.6
Q ss_pred HHHHHHHhHHHHHHHHhh
Q 015318 319 MACFFALTTPVGISIGTA 336 (409)
Q Consensus 319 ~~~~fsl~tPiG~~iG~~ 336 (409)
+.++-++..|+..+.|++
T Consensus 282 LTiit~IflP~T~IaGiy 299 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIY 299 (339)
T ss_dssp HHHHHHHSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333444445655555543
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=7.03 E-value=4e+02 Score=15.66 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015318 351 VEGILDSMSAGILVYMA 367 (409)
Q Consensus 351 ~~~il~~laaGtflYv~ 367 (409)
+.-|+.+++++.++|.=
T Consensus 8 ~lLIviav~aaVllylW 24 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567788899998863
No 9
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=6.68 E-value=5e+02 Score=16.86 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhc
Q 015318 316 ATLMACFFALTTPVGISIGTAAAS 339 (409)
Q Consensus 316 ~~~~~~~fsl~tPiG~~iG~~i~~ 339 (409)
++....+.-.++++|.++|..+..
T Consensus 6 If~~A~i~~~L~LvGla~Gf~LLk 29 (39)
T 1q90_M 6 IAGTALTMVGMTLVGLAIGFVLLR 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666778889888887654
No 10
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=6.59 E-value=4.6e+02 Score=16.81 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015318 391 SYLMLFLGAGLMSLLAI 407 (409)
Q Consensus 391 ~~~~~~~G~~~m~~l~~ 407 (409)
..++..+|.+.|.++..
T Consensus 8 ~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788899999877654
Done!