Query 015318
Match_columns 409
No_of_seqs 176 out of 1357
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 10:30:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015318.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015318hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 27.6 34 0.0025 27.7 4.9 52 47-98 115-169 (173)
2 d3d31c1 f.58.1.1 (C:13-260) Su 11.5 2.4E+02 0.017 22.6 6.9 27 352-378 134-160 (248)
3 d2r6gf2 f.58.1.1 (F:261-504) M 4.9 6.9E+02 0.05 19.5 7.0 23 356-378 119-141 (244)
4 d1kqfb2 f.23.22.1 (B:246-290) 4.2 3.7E+02 0.027 16.4 3.1 17 352-368 18-34 (45)
5 d1t2ya_ g.46.1.1 (A:) Metallot 4.0 1.7E+02 0.012 15.5 1.1 9 30-38 3-11 (26)
6 d2axtm1 f.23.35.1 (M:1-36) Pho 3.8 1.7E+02 0.013 17.0 1.1 10 94-103 9-18 (36)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 3.4 4.4E+02 0.032 14.9 3.1 17 392-408 6-22 (34)
8 d1rkla_ f.23.30.1 (A:) Oligosa 3.3 4.2E+02 0.031 15.0 2.5 16 393-408 10-25 (36)
9 d1q90d_ f.32.1.1 (D:) Subunit 2.9 7.9E+02 0.057 18.6 4.8 26 44-69 87-112 (156)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 2.8 7.7E+02 0.056 16.6 4.8 19 386-404 66-84 (103)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=27.65 E-value=34 Score=27.72 Aligned_cols=52 Identities=8% Similarity=0.141 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHhhHhhhccccccc---cCCCchhHHhhhhhchhHHHhhh
Q 015318 47 LKFVAIASILISGIVGVAIPLIGKHRRFL---KTDGSLFVATKAFAAGVILATGF 98 (409)
Q Consensus 47 lKi~~l~iIl~~Sllg~~lPl~~~~~~~~---~~~~~vls~~~~FggGV~Lataf 98 (409)
.-+..++.+.+++++|.++|++++|.... -..+.+..+.--+|--++++.|-
T Consensus 115 i~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g~~iyf~iA~ 169 (173)
T d2yvxa3 115 VGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVAR 169 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455566788889999999998876432 12344555555666666666554
No 2
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=11.51 E-value=2.4e+02 Score=22.58 Aligned_cols=27 Identities=7% Similarity=-0.157 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 015318 352 EGILDSMSAGILVYMALVDLIAADFLS 378 (409)
Q Consensus 352 ~~il~~laaGtflYv~~~Ell~~e~~~ 378 (409)
.-+...+.-.+.++.+..|=+|+|+.+
T Consensus 134 ~~~~~~~p~~~~~~~~~l~~i~~~~~e 160 (248)
T d3d31c1 134 AMLFVSMPYLANSAREGFKSVDPRLEN 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhcccchhhHHHHHHHHHHhcchhHHH
Confidence 334444444555555666667776653
No 3
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.94 E-value=6.9e+02 Score=19.48 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcc
Q 015318 356 DSMSAGILVYMALVDLIAADFLS 378 (409)
Q Consensus 356 ~~laaGtflYv~~~Ell~~e~~~ 378 (409)
.++.-.++++.+..+=+|+|..+
T Consensus 119 ~~~p~~~l~~~~~l~~I~~~l~E 141 (244)
T d2r6gf2 119 LGYPYMMILCMGLLKAIPDDLYE 141 (244)
T ss_dssp HHHHHHHHHHHHHGGGSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCHHHHH
Confidence 34455566777777777777664
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.15 E-value=3.7e+02 Score=16.41 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015318 352 EGILDSMSAGILVYMAL 368 (409)
Q Consensus 352 ~~il~~laaGtflYv~~ 368 (409)
.++.-++++|.|=||+.
T Consensus 18 ~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 18 AGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhee
Confidence 45666778899999884
No 5
>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]}
Probab=4.00 E-value=1.7e+02 Score=15.45 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=3.6
Q ss_pred CCCCCCccc
Q 015318 30 CESSDREDC 38 (409)
Q Consensus 30 ~~~~~~~~~ 38 (409)
||+++..+|
T Consensus 3 cgcsgassc 11 (26)
T d1t2ya_ 3 CGCSGASSC 11 (26)
T ss_dssp CSCSSTTTC
T ss_pred cccCccccc
Confidence 444433333
No 6
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.81 E-value=1.7e+02 Score=17.03 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=4.1
Q ss_pred HHhhhhhcch
Q 015318 94 LATGFVHMLS 103 (409)
Q Consensus 94 LataflHLLP 103 (409)
+||++.-++|
T Consensus 9 iAt~LFilvP 18 (36)
T d2axtm1 9 IATALFVLVP 18 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.45 E-value=4.4e+02 Score=14.93 Aligned_cols=17 Identities=12% Similarity=0.497 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 015318 392 YLMLFLGAGLMSLLAIW 408 (409)
Q Consensus 392 ~~~~~~G~~~m~~l~~w 408 (409)
++..+.|.+++.+++++
T Consensus 6 lv~tv~G~~vi~~vG~F 22 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLF 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeee
Confidence 57778888888888763
No 8
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.31 E-value=4.2e+02 Score=14.96 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 015318 393 LMLFLGAGLMSLLAIW 408 (409)
Q Consensus 393 ~~~~~G~~~m~~l~~w 408 (409)
+.+..|+..|.++-++
T Consensus 10 ~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 6677888888877654
No 9
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.85 E-value=7.9e+02 Score=18.56 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=18.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhHhhhc
Q 015318 44 AFNLKFVAIASILISGIVGVAIPLIG 69 (409)
Q Consensus 44 ~l~lKi~~l~iIl~~Sllg~~lPl~~ 69 (409)
...-|++.++++..+-++-.++|.+-
T Consensus 87 ~iP~kl~GVi~~~~~i~~L~~lP~l~ 112 (156)
T d1q90d_ 87 VVPNKLLGVLLMAAVPAGLITVPFIE 112 (156)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTTTTTT
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567887777777766666678864
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.83 E-value=7.7e+02 Score=16.58 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 015318 386 RLQVVSYLMLFLGAGLMSL 404 (409)
Q Consensus 386 ~~~~~~~~~~~~G~~~m~~ 404 (409)
.-|+...+.++.|..++++
T Consensus 66 ~gr~~~~~~~~~Gi~~~~~ 84 (103)
T d1r3jc_ 66 WGRCVAVVVMVAGITSFGL 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666544
Done!