Query 015319
Match_columns 409
No_of_seqs 218 out of 1726
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.7E-62 3.8E-67 503.6 33.3 273 106-408 49-323 (443)
2 PLN02218 polygalacturonase ADP 100.0 4.5E-62 9.8E-67 498.6 33.6 271 106-408 64-338 (431)
3 PLN03003 Probable polygalactur 100.0 1E-60 2.2E-65 488.1 31.0 263 106-408 20-284 (456)
4 PLN02155 polygalacturonase 100.0 1E-59 2.2E-64 476.3 31.6 267 106-408 24-292 (394)
5 PLN03010 polygalacturonase 100.0 4.7E-58 1E-62 465.5 31.8 256 107-408 44-303 (409)
6 PLN02188 polygalacturonase/gly 100.0 3E-57 6.5E-62 460.1 32.2 268 106-408 33-303 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 4.7E-44 1E-48 356.4 20.0 234 140-408 5-238 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 2.4E-41 5.2E-46 350.3 26.4 288 104-408 77-391 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 4.9E-23 1.1E-27 208.1 22.1 226 108-396 36-317 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 3.6E-21 7.8E-26 179.5 19.8 214 109-391 1-225 (225)
11 PLN02793 Probable polygalactur 99.7 9.2E-15 2E-19 151.0 23.7 137 264-408 202-362 (443)
12 PLN02218 polygalacturonase ADP 99.6 4.6E-14 9.9E-19 145.3 22.1 136 264-407 217-375 (431)
13 PLN02188 polygalacturonase/gly 99.6 9.1E-14 2E-18 142.1 23.6 138 264-407 180-341 (404)
14 PLN03010 polygalacturonase 99.6 1.4E-13 3E-18 140.7 23.3 170 165-397 138-321 (409)
15 PLN03003 Probable polygalactur 99.6 1.1E-13 2.4E-18 142.5 22.2 174 165-397 112-302 (456)
16 PLN02155 polygalacturonase 99.6 2.6E-13 5.7E-18 138.2 20.2 138 264-408 170-331 (394)
17 PF00295 Glyco_hydro_28: Glyco 99.6 2.7E-13 5.9E-18 135.5 19.6 136 264-407 117-275 (326)
18 TIGR03805 beta_helix_1 paralle 99.5 5E-13 1.1E-17 132.8 18.6 38 129-173 1-39 (314)
19 PF03718 Glyco_hydro_49: Glyco 99.5 3.4E-12 7.3E-17 131.1 20.5 195 141-386 232-441 (582)
20 COG5434 PGU1 Endopygalactoruna 99.2 9E-11 2E-15 123.0 14.8 124 263-393 262-405 (542)
21 PF13229 Beta_helix: Right han 98.7 1E-07 2.2E-12 83.3 10.5 86 264-355 2-87 (158)
22 PF12541 DUF3737: Protein of u 98.7 1.1E-07 2.4E-12 90.6 10.2 114 267-394 94-233 (277)
23 TIGR03805 beta_helix_1 paralle 98.6 1.4E-06 3E-11 86.9 17.3 130 262-396 107-253 (314)
24 PF05048 NosD: Periplasmic cop 98.4 8E-06 1.7E-10 77.6 15.8 112 264-391 37-150 (236)
25 PF13229 Beta_helix: Right han 98.4 4.6E-06 9.9E-11 72.7 12.7 121 263-396 24-148 (158)
26 COG3866 PelB Pectate lyase [Ca 98.4 4.1E-05 8.8E-10 74.5 18.4 140 264-403 118-293 (345)
27 PF05048 NosD: Periplasmic cop 98.3 9.5E-06 2.1E-10 77.1 12.9 117 263-395 14-131 (236)
28 COG3866 PelB Pectate lyase [Ca 98.3 1.4E-05 3.1E-10 77.6 13.1 123 265-387 95-230 (345)
29 smart00656 Amb_all Amb_all dom 98.2 1.1E-05 2.4E-10 74.7 11.0 92 293-385 39-143 (190)
30 PF07602 DUF1565: Protein of u 98.1 0.00012 2.5E-09 70.4 15.7 92 265-361 91-194 (246)
31 TIGR03808 RR_plus_rpt_1 twin-a 98.1 3.6E-05 7.8E-10 79.1 12.9 86 264-355 108-200 (455)
32 PLN02634 probable pectinestera 98.0 0.00092 2E-08 67.5 21.2 110 266-386 144-266 (359)
33 PF00544 Pec_lyase_C: Pectate 98.0 5.7E-05 1.2E-09 70.6 10.7 112 271-386 21-158 (200)
34 PF14592 Chondroitinas_B: Chon 97.9 0.0005 1.1E-08 70.6 17.3 26 125-153 3-28 (425)
35 PLN02304 probable pectinestera 97.8 0.0054 1.2E-07 62.4 22.1 111 265-386 156-287 (379)
36 PRK10123 wcaM putative colanic 97.8 0.00027 5.7E-09 68.6 11.6 58 106-178 31-90 (464)
37 PLN02682 pectinesterase family 97.6 0.017 3.6E-07 58.8 22.7 112 264-386 156-280 (369)
38 PLN02480 Probable pectinestera 97.6 0.0031 6.7E-08 63.6 17.0 46 124-173 58-105 (343)
39 PRK10531 acyl-CoA thioesterase 97.6 0.035 7.6E-07 57.3 24.3 114 263-386 198-336 (422)
40 PF03718 Glyco_hydro_49: Glyco 97.6 0.0038 8.2E-08 65.4 17.1 130 272-407 357-512 (582)
41 PLN02708 Probable pectinestera 97.5 0.0094 2E-07 63.8 19.1 82 264-354 323-409 (553)
42 smart00656 Amb_all Amb_all dom 97.4 0.005 1.1E-07 57.1 14.9 129 263-403 32-182 (190)
43 PLN02773 pectinesterase 97.4 0.031 6.7E-07 55.8 20.6 43 264-306 95-142 (317)
44 PLN02506 putative pectinestera 97.4 0.011 2.4E-07 63.0 18.0 82 264-354 312-398 (537)
45 PF12541 DUF3737: Protein of u 97.4 0.0012 2.6E-08 63.4 9.7 104 270-387 78-207 (277)
46 PLN02468 putative pectinestera 97.3 0.013 2.9E-07 62.9 18.4 46 125-174 269-316 (565)
47 PLN02301 pectinesterase/pectin 97.3 0.015 3.3E-07 62.1 18.7 46 125-174 247-294 (548)
48 PLN02665 pectinesterase family 97.3 0.025 5.5E-07 57.5 19.3 46 125-174 79-126 (366)
49 PLN02488 probable pectinestera 97.3 0.03 6.5E-07 59.0 20.1 47 124-174 207-255 (509)
50 PLN02432 putative pectinestera 97.3 0.03 6.6E-07 55.3 19.0 46 125-174 22-69 (293)
51 PLN02313 Pectinesterase/pectin 97.3 0.017 3.6E-07 62.4 18.6 81 265-354 356-441 (587)
52 PF12708 Pectate_lyase_3: Pect 97.3 0.0092 2E-07 55.2 14.6 116 273-407 94-217 (225)
53 PLN02713 Probable pectinestera 97.2 0.018 3.9E-07 61.8 18.3 46 125-174 261-311 (566)
54 PLN02416 probable pectinestera 97.2 0.021 4.5E-07 61.1 18.4 80 266-354 312-396 (541)
55 PLN03043 Probable pectinestera 97.2 0.023 5E-07 60.7 18.7 43 264-306 306-353 (538)
56 PLN02170 probable pectinestera 97.2 0.028 6.1E-07 59.6 19.1 46 125-174 236-284 (529)
57 PLN02217 probable pectinestera 97.2 0.022 4.9E-07 62.0 18.5 28 125-153 261-290 (670)
58 PLN02933 Probable pectinestera 97.2 0.031 6.8E-07 59.4 19.1 46 125-174 229-276 (530)
59 PLN02745 Putative pectinestera 97.2 0.029 6.2E-07 60.6 19.1 83 264-355 365-452 (596)
60 PLN02197 pectinesterase 97.2 0.022 4.7E-07 61.4 18.1 80 266-354 359-443 (588)
61 PF00544 Pec_lyase_C: Pectate 97.2 0.0048 1E-07 57.6 11.5 92 264-355 38-157 (200)
62 PLN02497 probable pectinestera 97.2 0.019 4.2E-07 57.6 16.5 107 268-386 112-239 (331)
63 PLN02201 probable pectinestera 97.2 0.038 8.2E-07 58.7 19.3 47 124-174 216-264 (520)
64 PF01095 Pectinesterase: Pecti 97.1 0.015 3.3E-07 57.6 15.2 61 268-335 84-150 (298)
65 PLN02995 Probable pectinestera 97.1 0.028 6.2E-07 60.0 18.1 46 125-174 234-283 (539)
66 PLN02176 putative pectinestera 97.1 0.064 1.4E-06 54.1 19.5 46 125-174 50-97 (340)
67 PLN02314 pectinesterase 97.1 0.036 7.9E-07 59.9 18.6 46 125-174 289-336 (586)
68 PLN02916 pectinesterase family 97.0 0.059 1.3E-06 57.0 18.6 46 125-174 198-248 (502)
69 PLN02484 probable pectinestera 97.0 0.05 1.1E-06 58.8 18.4 47 125-174 283-331 (587)
70 PLN02671 pectinesterase 96.9 0.09 1.9E-06 53.4 18.5 46 125-174 70-117 (359)
71 PLN02990 Probable pectinestera 96.7 0.13 2.8E-06 55.4 18.9 46 125-174 270-317 (572)
72 COG3420 NosD Nitrous oxidase a 96.6 0.13 2.9E-06 51.3 16.9 125 269-395 105-247 (408)
73 PF12218 End_N_terminal: N ter 96.6 0.0024 5.1E-08 47.8 3.3 38 117-157 1-38 (67)
74 PF01696 Adeno_E1B_55K: Adenov 96.3 0.42 9E-06 48.9 18.8 81 269-356 119-200 (386)
75 PF08480 Disaggr_assoc: Disagg 95.3 0.17 3.8E-06 46.4 10.1 102 294-402 2-122 (198)
76 KOG1924 RhoA GTPase effector D 94.5 0.045 9.7E-07 59.6 4.6 16 109-124 606-621 (1102)
77 TIGR03804 para_beta_helix para 94.1 0.087 1.9E-06 36.6 4.0 40 288-332 2-41 (44)
78 COG4677 PemB Pectin methyleste 93.7 1.7 3.6E-05 43.5 13.4 113 264-387 182-320 (405)
79 PLN02773 pectinesterase 92.6 1.4 3.1E-05 44.1 11.5 72 290-363 98-170 (317)
80 PLN02480 Probable pectinestera 92.5 2.2 4.9E-05 43.2 12.8 109 266-386 127-252 (343)
81 COG3420 NosD Nitrous oxidase a 92.1 1.2 2.6E-05 44.7 10.0 114 262-389 120-263 (408)
82 PF14592 Chondroitinas_B: Chon 90.7 3.4 7.3E-05 43.0 12.0 128 265-396 62-221 (425)
83 TIGR03804 para_beta_helix para 90.5 0.32 6.8E-06 33.7 3.1 41 314-355 1-41 (44)
84 PF01095 Pectinesterase: Pecti 89.2 2.5 5.3E-05 42.1 9.4 68 292-362 85-154 (298)
85 PF01690 PLRV_ORF5: Potato lea 88.9 1.8 3.9E-05 45.2 8.4 32 269-305 142-173 (465)
86 PLN02176 putative pectinestera 88.6 9.9 0.00022 38.5 13.3 106 269-385 120-245 (340)
87 PLN02708 Probable pectinestera 88.3 3.5 7.7E-05 44.4 10.5 73 289-363 325-398 (553)
88 PF08480 Disaggr_assoc: Disagg 87.2 12 0.00026 34.5 11.7 115 271-390 2-147 (198)
89 PLN02713 Probable pectinestera 87.2 4.3 9.4E-05 43.9 10.4 113 264-386 333-455 (566)
90 PLN02506 putative pectinestera 87.1 4 8.6E-05 43.9 10.0 83 290-384 315-398 (537)
91 PF07602 DUF1565: Protein of u 86.8 7.7 0.00017 37.5 10.9 100 288-395 91-197 (246)
92 PLN02170 probable pectinestera 86.1 5.9 0.00013 42.4 10.5 114 263-386 305-427 (529)
93 PLN02416 probable pectinestera 85.9 4.5 9.9E-05 43.5 9.6 70 291-362 314-384 (541)
94 PLN02916 pectinesterase family 85.9 6 0.00013 42.1 10.4 115 263-387 269-393 (502)
95 PLN02301 pectinesterase/pectin 85.7 5.2 0.00011 43.1 10.0 114 264-387 316-439 (548)
96 PLN03043 Probable pectinestera 85.6 5.7 0.00012 42.7 10.2 64 290-355 309-373 (538)
97 PLN02201 probable pectinestera 85.5 7.2 0.00016 41.8 10.8 114 264-387 286-409 (520)
98 PLN02468 putative pectinestera 85.4 5.6 0.00012 43.1 10.1 122 266-397 340-471 (565)
99 PLN02665 pectinesterase family 84.9 9.7 0.00021 39.0 11.1 115 263-387 146-273 (366)
100 PLN02933 Probable pectinestera 84.7 7.2 0.00016 41.8 10.4 114 263-386 297-420 (530)
101 PLN02488 probable pectinestera 84.7 7.5 0.00016 41.4 10.4 114 264-387 277-400 (509)
102 PRK10781 rcsF outer membrane l 84.6 7.9 0.00017 33.9 8.8 23 126-148 86-108 (133)
103 PLN02745 Putative pectinestera 84.6 6.8 0.00015 42.7 10.3 72 289-362 367-439 (596)
104 PF03211 Pectate_lyase: Pectat 84.3 38 0.00083 32.1 15.7 129 271-406 61-191 (215)
105 PLN02671 pectinesterase 84.3 12 0.00026 38.3 11.3 112 263-386 146-270 (359)
106 PLN02217 probable pectinestera 84.1 5 0.00011 44.2 9.1 114 264-387 330-453 (670)
107 PLN02197 pectinesterase 84.0 7.2 0.00016 42.4 10.2 66 291-358 361-427 (588)
108 PLN02314 pectinesterase 83.9 6.6 0.00014 42.7 9.9 112 266-387 360-481 (586)
109 PLN02698 Probable pectinestera 83.7 6.4 0.00014 41.9 9.5 112 266-387 265-386 (497)
110 PF01690 PLRV_ORF5: Potato lea 83.4 1.1 2.4E-05 46.7 3.5 9 322-330 163-171 (465)
111 PLN02313 Pectinesterase/pectin 83.3 7.3 0.00016 42.4 9.9 71 290-362 358-429 (587)
112 PLN02990 Probable pectinestera 82.9 7.8 0.00017 42.0 9.9 113 265-387 341-463 (572)
113 PLN02484 probable pectinestera 82.9 6.7 0.00015 42.6 9.4 113 264-386 353-475 (587)
114 PRK10531 acyl-CoA thioesterase 82.8 10 0.00022 39.6 10.2 89 288-386 200-303 (422)
115 PRK09752 adhesin; Provisional 82.8 1.2 2.6E-05 51.2 3.8 10 167-176 1010-1019(1250)
116 PLN02432 putative pectinestera 82.7 15 0.00033 36.4 11.1 108 266-385 89-204 (293)
117 PRK13855 type IV secretion sys 82.0 6.2 0.00014 40.3 8.2 12 106-117 109-120 (376)
118 PRK10123 wcaM putative colanic 81.9 3.8 8.2E-05 40.4 6.4 35 270-305 245-279 (464)
119 PLN02698 Probable pectinestera 81.9 24 0.00052 37.7 12.9 113 264-388 292-421 (497)
120 PLN02995 Probable pectinestera 81.9 8.5 0.00018 41.4 9.7 113 264-386 305-427 (539)
121 PHA01732 proline-rich protein 81.4 1.9 4.2E-05 34.6 3.5 9 125-133 43-51 (94)
122 PF03211 Pectate_lyase: Pectat 78.5 13 0.00028 35.3 8.6 51 295-351 62-113 (215)
123 PF01696 Adeno_E1B_55K: Adenov 78.3 9.1 0.0002 39.3 8.1 85 291-390 118-204 (386)
124 PHA01732 proline-rich protein 77.1 2.8 6.2E-05 33.7 3.2 7 143-149 66-72 (94)
125 PF11669 WBP-1: WW domain-bind 76.0 2.6 5.7E-05 35.1 2.9 13 16-28 29-41 (102)
126 PF09251 PhageP22-tail: Salmon 73.9 38 0.00082 35.3 10.9 35 263-300 147-181 (549)
127 smart00722 CASH Domain present 66.7 41 0.0009 28.1 8.5 25 318-342 73-101 (146)
128 smart00710 PbH1 Parallel beta- 66.2 5.8 0.00013 23.0 2.2 22 374-395 2-24 (26)
129 PRK09752 adhesin; Provisional 63.5 3.1E+02 0.0068 32.5 16.8 119 264-385 114-265 (1250)
130 PF09251 PhageP22-tail: Salmon 61.8 22 0.00047 37.0 6.5 22 293-318 263-284 (549)
131 PF06679 DUF1180: Protein of u 55.0 42 0.00092 30.4 6.6 12 124-135 89-100 (163)
132 KOG2675 Adenylate cyclase-asso 53.9 15 0.00033 38.1 3.9 24 264-287 355-384 (480)
133 smart00722 CASH Domain present 50.6 50 0.0011 27.6 6.2 68 268-338 73-144 (146)
134 COG4677 PemB Pectin methyleste 47.9 34 0.00074 34.5 5.2 109 268-386 218-351 (405)
135 KOG2675 Adenylate cyclase-asso 47.1 21 0.00045 37.2 3.6 12 288-299 394-405 (480)
136 PRK13881 conjugal transfer pro 46.3 61 0.0013 34.2 6.9 9 126-134 143-151 (472)
137 PF15621 PROL5-SMR: Proline-ri 46.1 72 0.0016 27.2 6.1 23 6-28 1-23 (113)
138 PLN02682 pectinesterase family 45.9 2E+02 0.0043 29.6 10.5 109 263-386 189-305 (369)
139 PLN02304 probable pectinestera 45.2 51 0.0011 33.9 6.2 87 288-386 156-248 (379)
140 PLN02634 probable pectinestera 45.1 2.1E+02 0.0045 29.3 10.5 109 263-386 175-291 (359)
141 PF12273 RCR: Chitin synthesis 41.3 6.6 0.00014 33.9 -0.8 20 10-29 4-23 (130)
142 PF07462 MSP1_C: Merozoite sur 36.8 44 0.00094 35.8 4.2 13 109-121 333-345 (574)
143 PF15050 SCIMP: SCIMP protein 35.1 36 0.00078 29.3 2.7 14 26-39 32-45 (133)
144 PRK14954 DNA polymerase III su 32.9 1.3E+02 0.0029 33.1 7.3 7 127-133 503-509 (620)
145 PF15471 TMEM171: Transmembran 30.6 1.9E+02 0.0041 28.5 7.1 13 106-118 250-262 (319)
146 KOG1777 Putative Zn-finger pro 30.5 67 0.0014 33.7 4.2 17 321-337 427-443 (625)
147 PRK14864 putative biofilm stre 28.3 1.2E+02 0.0025 25.5 4.6 20 5-24 4-23 (104)
148 PF10873 DUF2668: Protein of u 28.2 1.9E+02 0.0042 25.7 6.1 17 87-103 132-148 (155)
149 PF07172 GRP: Glycine rich pro 28.0 29 0.00063 28.6 1.0 6 26-31 22-27 (95)
150 PF15240 Pro-rich: Proline-ric 27.1 38 0.00082 31.2 1.7 15 9-23 2-16 (179)
151 PRK14950 DNA polymerase III su 26.5 1.9E+02 0.0041 31.4 7.2 16 123-138 461-476 (585)
152 PF05510 Sarcoglycan_2: Sarcog 26.2 85 0.0018 32.4 4.2 17 25-41 306-322 (386)
153 PRK13855 type IV secretion sys 26.0 2.9E+02 0.0063 28.5 7.9 7 15-21 43-49 (376)
154 PTZ00462 Serine-repeat antigen 24.3 3.3E+02 0.0072 31.7 8.6 19 12-30 7-25 (1004)
155 PF04277 OAD_gamma: Oxaloaceta 23.3 1.3E+02 0.0029 23.1 4.0 10 125-134 65-74 (79)
156 KOG1925 Rac1 GTPase effector F 23.1 96 0.0021 33.1 3.9 20 119-138 313-332 (817)
157 KOG3671 Actin regulatory prote 22.9 72 0.0016 33.9 2.9 63 71-133 408-475 (569)
158 PLN02497 probable pectinestera 22.8 8.1E+02 0.017 24.8 12.4 86 288-385 109-202 (331)
159 PTZ00459 mucin-associated surf 22.2 59 0.0013 32.2 2.1 26 3-28 2-27 (291)
160 PF11429 Colicin_D: Colicin D; 22.2 88 0.0019 25.7 2.7 38 113-154 10-48 (92)
161 PF10162 G8: G8 domain; Inter 21.7 2.7E+02 0.0059 23.7 5.9 36 140-181 11-46 (125)
162 PF07217 Het-C: Heterokaryon i 21.5 72 0.0016 34.6 2.7 9 31-39 40-48 (606)
163 PF13908 Shisa: Wnt and FGF in 21.5 3.6E+02 0.0079 24.2 7.1 10 13-22 86-95 (179)
164 PRK09718 hypothetical protein; 21.2 1.8E+02 0.0039 31.1 5.5 11 344-354 168-178 (512)
165 KOG0965 Predicted RNA-binding 21.0 1.1E+02 0.0024 34.2 4.0 23 115-137 722-745 (988)
166 PRK03554 tatA twin arginine tr 20.7 93 0.002 25.3 2.6 19 1-19 1-19 (89)
167 COG0336 TrmD tRNA-(guanine-N1) 20.2 76 0.0017 30.4 2.3 45 108-152 34-92 (240)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.7e-62 Score=503.60 Aligned_cols=273 Identities=41% Similarity=0.735 Sum_probs=249.6
Q ss_pred CCceEEEeeccccCCCCCccHHHHHHHHHHHhh-cCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcc
Q 015319 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184 (409)
Q Consensus 106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~-~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~ 184 (409)
..++|+|+||||+|||++|||+|||+||++||. .+|++|+||+|.+|+++||.|.|| |+++++|+++|+|+++.+...
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gp-cks~vtL~l~g~l~~~~d~~~ 127 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGP-CKAKLTLQISGTIIAPKDPDV 127 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCc-cCCCeEEEEEEEEEccCChHH
Confidence 348999999999999999999999999997665 468999999997799999999998 999999999999999999999
Q ss_pred cCC-CceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCce
Q 015319 185 WGK-GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT 263 (409)
Q Consensus 185 ~~~-g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~ 263 (409)
|.. ....||.+.+++||+|+|+|+|||+|+.||....... . ......||+
T Consensus 128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~--------------------------~---~~~~~~rP~ 178 (443)
T PLN02793 128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKIN--------------------------H---TNPCRHAPT 178 (443)
T ss_pred ccCCCCceEEEEecCceEEEEeceEEECCCccccccccccc--------------------------C---CCCccCCce
Confidence 974 3467999999999999999999999999996521000 0 001124899
Q ss_pred eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCc
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~ 343 (409)
+|.|.+|+|++|++++++|+++|++++..|++|+|++++|.++..++|+||||+++|+||+|+||+|.++||||++++++
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s 258 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNS 258 (443)
T ss_pred EEEEEeeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCc
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred eeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319 344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS 408 (409)
Q Consensus 344 ~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~ 408 (409)
+||+|+||+|.++|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||||+|++|+|+||..+
T Consensus 259 ~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ 323 (443)
T PLN02793 259 SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQ 323 (443)
T ss_pred CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEE
Confidence 99999999999999999999999877889999999999999999999999999999999999764
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=4.5e-62 Score=498.58 Aligned_cols=271 Identities=39% Similarity=0.750 Sum_probs=247.7
Q ss_pred CCceEEEeeccccCCCCCccHHHHHHHHHHHhhc-CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcc
Q 015319 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184 (409)
Q Consensus 106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~ 184 (409)
.+++|||+||||+|||++|||+|||+||++||.. |+++|+||+|.+|+++++.|.|| |+++++|+++|+|+++++..+
T Consensus 64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp-~ks~~~l~l~g~L~~s~d~~~ 142 (431)
T PLN02218 64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGP-CKSIRTVQIFGTLSASQKRSD 142 (431)
T ss_pred CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCc-cCCceEEEEEEEEEeCCChhh
Confidence 4579999999999999999999999999776755 56799999997799999999998 999999999999999999988
Q ss_pred cCCCceeeEEEecccCeeeeec--eEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCC-CCC
Q 015319 185 WGKGLLWWLDFTKLKGITIQGK--GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMP-SIK 261 (409)
Q Consensus 185 ~~~g~~~~i~~~~~~nVtI~G~--G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r 261 (409)
|.. ...||.|.+++||+|+|+ |+|||+|+.||....... ...+ ..|
T Consensus 143 y~~-~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~------------------------------~~~~~~~r 191 (431)
T PLN02218 143 YKD-ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRN------------------------------KAKPCTKA 191 (431)
T ss_pred ccc-cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccC------------------------------CcCccCcC
Confidence 853 457999999999999996 999999999997531000 0001 248
Q ss_pred ceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCC
Q 015319 262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT 341 (409)
Q Consensus 262 p~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~s 341 (409)
|+++.|.+|+|++|+|++++|+++|++++..|++|+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||+|++
T Consensus 192 P~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIks 271 (431)
T PLN02218 192 PTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIES 271 (431)
T ss_pred CEEEEEEccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319 342 GCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS 408 (409)
Q Consensus 342 g~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~ 408 (409)
|++||+|+||+|.++|||+|||+|++...+.|+||+|+||+|.++.+|+|||||+|++|+|+||+.+
T Consensus 272 gs~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ 338 (431)
T PLN02218 272 GSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQ 338 (431)
T ss_pred CCceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEE
Confidence 9999999999999999999999998877789999999999999999999999999999999999754
No 3
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1e-60 Score=488.08 Aligned_cols=263 Identities=40% Similarity=0.791 Sum_probs=245.0
Q ss_pred CCceEEEeeccccCCCCCccHHHHHHHHHHHhh-cCCcEEEECCceEEEeCCcccCCCcccc-ceEEEecceEEcCCCCc
Q 015319 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQA-NIIFQLDGTIIAPTGSK 183 (409)
Q Consensus 106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~-~gg~~v~vP~G~~y~~~~i~l~g~~~~s-~~~l~l~Gtl~~~~~~~ 183 (409)
.+.+|||++|||+|||++|||+|||+||++||. .++++|+||+|.+|++++|.|.|| |++ .+.++++|+|+++.. .
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gp-ck~~~~~~~i~G~i~ap~~-~ 97 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGS-CKSTPVFVQMLGKLVAPSK-G 97 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCC-ccCcceeeccCceEecCcc-c
Confidence 557899999999999999999999999999886 478999999998899999999998 776 488899999998764 4
Q ss_pred ccCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCce
Q 015319 184 DWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT 263 (409)
Q Consensus 184 ~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~ 263 (409)
.|......||.|.+++|++|+|.|+|||+|+.||... ..||+
T Consensus 98 ~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~--------------------------------------~~rP~ 139 (456)
T PLN03003 98 NWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK--------------------------------------GSRPT 139 (456)
T ss_pred cccCCCcceEEEEcccceEEeccceEeCCchhhhhcc--------------------------------------cCCce
Confidence 6866567899999999999999999999999999642 13899
Q ss_pred eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCc
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~ 343 (409)
+++|.+|+|++|+|++++|+++|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++++|+
T Consensus 140 ~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs 219 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGT 219 (456)
T ss_pred EEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred eeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319 344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS 408 (409)
Q Consensus 344 ~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~ 408 (409)
+||+|+||+|.++|||+|||+|+++..+.|+||+|+||+|.++.+|+|||||+|++|+|+||..+
T Consensus 220 ~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~ 284 (456)
T PLN03003 220 SNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFN 284 (456)
T ss_pred ccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEE
Confidence 99999999999999999999999877788999999999999999999999999999999998754
No 4
>PLN02155 polygalacturonase
Probab=100.00 E-value=1e-59 Score=476.34 Aligned_cols=267 Identities=37% Similarity=0.707 Sum_probs=243.3
Q ss_pred CCceEEEeeccccCCCCCccHHHHHHHHHHHhh-cCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcc
Q 015319 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184 (409)
Q Consensus 106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~-~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~ 184 (409)
.+++|||+||||+|||++|||+|||+||++||. .+|++|+||+| .|++++|.|.|| |+|+++|+|+|+|+++.++..
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G-~yl~g~i~l~gp-cksnv~l~l~G~l~~~~d~~~ 101 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGP-CKSKITFQVAGTVVAPEDYRT 101 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCC-cEEEEEEEEccc-CCCCceEEEeeEEECcccccc
Confidence 457999999999999999999999999975554 57899999999 899999999999 999999999999999998877
Q ss_pred cCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCcee
Q 015319 185 WGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTA 264 (409)
Q Consensus 185 ~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~ 264 (409)
|.. ...|+.|.+++|++|+| |+|||+|+.||.... .. .....+|++
T Consensus 102 ~~~-~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~----~~----------------------------~~~~~~p~~ 147 (394)
T PLN02155 102 FGN-SGYWILFNKVNRFSLVG-GTFDARANGFWSCRK----SG----------------------------QNCPPGVRS 147 (394)
T ss_pred ccc-cceeEEEECcCCCEEEc-cEEecCceeEEEccc----CC----------------------------CCCCCcccc
Confidence 753 24699999999999999 999999999996531 00 001126789
Q ss_pred EEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCce
Q 015319 265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344 (409)
Q Consensus 265 i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~ 344 (409)
+.|..|+|++|++++++|+++|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++
T Consensus 148 i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~ 227 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTR 227 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCc
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC-CCCeEEEEEeC
Q 015319 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV-MIPSGTQCYNS 408 (409)
Q Consensus 345 nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G-~~g~v~~~~~~ 408 (409)
||+|+||+|..+|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||||++ ++|+|+||+.+
T Consensus 228 nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ 292 (394)
T PLN02155 228 NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQ 292 (394)
T ss_pred eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEE
Confidence 99999999999999999999988778899999999999999999999999986 78999999864
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=4.7e-58 Score=465.45 Aligned_cols=256 Identities=41% Similarity=0.796 Sum_probs=239.7
Q ss_pred CceEEEeeccccCCCCCccHHHHHHHHHHHhhcCC--cEEEECCceEEEeCCcccCCCccc-cceEEEecceEEcCCCCc
Q 015319 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQ-ANIIFQLDGTIIAPTGSK 183 (409)
Q Consensus 107 ~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg--~~v~vP~G~~y~~~~i~l~g~~~~-s~~~l~l~Gtl~~~~~~~ 183 (409)
.++|||+||||+|||++|||+|||+||++||..+| ++|+||+|.+|+++||.|.+| |+ ++++|+++|+|+++++..
T Consensus 44 ~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~p-c~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 44 GQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGP-CKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCC-CCCCcEEEEEccEEEccCChh
Confidence 46899999999999999999999999998886543 799999998899999999988 75 689999999999999999
Q ss_pred ccCC-CceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCc
Q 015319 184 DWGK-GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKP 262 (409)
Q Consensus 184 ~~~~-g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp 262 (409)
.|.. ....|+.|.+++||+|+|+|+|||+|+.||.
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------------------------------------- 158 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------------------------------------- 158 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc--------------------------------------------
Confidence 9964 2457999999999999999999999999983
Q ss_pred eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG 342 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg 342 (409)
+++|.+|+|++|+|++++|+++|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++
T Consensus 159 -~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg 237 (409)
T PLN03010 159 -ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG 237 (409)
T ss_pred -eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC
Confidence 4789999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319 343 CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS 408 (409)
Q Consensus 343 ~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~ 408 (409)
+.|+.|++++|.++|||+|||+|++++.+.|+||+|+||+|.++.+|+|||||+|++|+|+||..+
T Consensus 238 s~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~ 303 (409)
T PLN03010 238 SSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFE 303 (409)
T ss_pred CCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEE
Confidence 999999999999999999999998877788999999999999999999999999999999998753
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=3e-57 Score=460.13 Aligned_cols=268 Identities=38% Similarity=0.703 Sum_probs=239.3
Q ss_pred CCceEEEeeccccCCCCCccHHHHHHHHHHHhhc-CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcc
Q 015319 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184 (409)
Q Consensus 106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~ 184 (409)
...+|||+||||+|||.+|||+|||+||++||.. ||++|+||+| +|++++|.|.|| |++...|.| +|+++++..+
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G-~yl~g~i~lkgp-c~~~s~v~l--~L~~s~d~~~ 108 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYYIGPVQFHGP-CTNVSSLTF--TLKAATDLSR 108 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCC-eEEEEeEEeCCC-cCcceeEEE--EEEcCCCHHH
Confidence 4479999999999999999999999999876654 5679999999 899999999987 765445555 9999999999
Q ss_pred cCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCcee
Q 015319 185 WGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTA 264 (409)
Q Consensus 185 ~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~ 264 (409)
|.. ...|+.|..++||+|+|+|+|||+|+.||..... + . ......||++
T Consensus 109 y~~-~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~--~---------------------------~-~~~~~~rP~~ 157 (404)
T PLN02188 109 YGS-GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKC--P---------------------------I-RKDCKLLPTS 157 (404)
T ss_pred CCC-ccceEEEeceeeEEEEeeEEEeCCCccccccccc--c---------------------------c-CCCCCcCceE
Confidence 975 3569999999999999999999999999975310 0 0 0111258999
Q ss_pred EEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCce
Q 015319 265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344 (409)
Q Consensus 265 i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~ 344 (409)
|.|..|+|++|+|++++|+++|++++..|++|+|++++|.++.+++|+||||+++|+||+|+||+|.++||||+++++++
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~ 237 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNS 237 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred eEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC--CCCeEEEEEeC
Q 015319 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV--MIPSGTQCYNS 408 (409)
Q Consensus 345 nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G--~~g~v~~~~~~ 408 (409)
||+|+||.|..+|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||||+| +.|+|+||+.+
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEE
Confidence 99999999999999999999988778889999999999999999999999987 46899998754
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=4.7e-44 Score=356.37 Aligned_cols=234 Identities=35% Similarity=0.613 Sum_probs=201.4
Q ss_pred CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeeeeeceEEeCCCcccccC
Q 015319 140 EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQD 219 (409)
Q Consensus 140 gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~ 219 (409)
++++|+||+| +|+++++.|.++ |..+..++|+|++.++.....|.. .+||.+.+++|++|+|+|+|||+|+.||..
T Consensus 5 ~~~~v~vP~g-~~~~~~~~l~~~-l~~~~~~~l~G~~~~~~~~~~~~~--~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~ 80 (326)
T PF00295_consen 5 GGGTVVVPAG-TYLLGPLFLKST-LHSDVGLTLDGTINFSYDNWEGPN--SALIYAENAENITITGKGTIDGNGQAWWDG 80 (326)
T ss_dssp EEESEEESTS-TEEEEETSEETE-CETTCEEEEESEEEEG-EESTSE---SEEEEEESEEEEECTTSSEEE--GGGTCSS
T ss_pred cCCEEEECCC-CeEEceeEEEcc-cCCCeEEEEEEEEEeCCCcccCCc--cEEEEEEceEEEEecCCceEcCchhhhhcc
Confidence 4678999999 899999999652 458999999999998854444432 789999999999999999999999999976
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEE
Q 015319 220 YPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVH 299 (409)
Q Consensus 220 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~ 299 (409)
.... ......||+++.|.+|+|++|++++++|+++|++++..|++|+|+
T Consensus 81 ~~~~-------------------------------~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~ 129 (326)
T PF00295_consen 81 SGDA-------------------------------NNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTIS 129 (326)
T ss_dssp CTTH-------------------------------CCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEE
T ss_pred cccc-------------------------------ccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEc
Confidence 4100 012235899999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEE
Q 015319 300 DVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVR 379 (409)
Q Consensus 300 n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~ 379 (409)
+++|.++...+|+|||++.+|+||+|+||+|.++||||+++++..||+|+||+|.++||++|||++..+....|+||+|+
T Consensus 130 ~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~ 209 (326)
T PF00295_consen 130 NITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFE 209 (326)
T ss_dssp SEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEE
T ss_pred ceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEE
Confidence 99999987779999999999999999999999999999999998899999999999999999999866545679999999
Q ss_pred eEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319 380 DVMMHNTMNGVRIKTWQVMIPSGTQCYNS 408 (409)
Q Consensus 380 n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~ 408 (409)
||+|.++.+|++||+|+|++|+|+||..+
T Consensus 210 n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ 238 (326)
T PF00295_consen 210 NCTIINTDNGIRIKTWPGGGGYVSNITFE 238 (326)
T ss_dssp EEEEESESEEEEEEEETTTSEEEEEEEEE
T ss_pred EEEeeccceEEEEEEecccceEEeceEEE
Confidence 99999999999999999999999999753
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-41 Score=350.25 Aligned_cols=288 Identities=28% Similarity=0.442 Sum_probs=225.5
Q ss_pred CCCCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEec-c-eEEcCCC
Q 015319 104 SHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD-G-TIIAPTG 181 (409)
Q Consensus 104 ~~~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~-G-tl~~~~~ 181 (409)
......++|.+|||++||.+|+++|||+||++|...+|++|+||+| +|+.++|.| +|+++|+++ | ||+++.+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~a~Gg~V~lPaG-tylsg~l~L-----KS~~~L~l~egatl~~~~~ 150 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACASAGGGTVLLPAG-TYLSGPLFL-----KSNVTLHLAEGATLLASSN 150 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHhhhhhcCceEEECCc-eeEeeeEEE-----ecccEEEecCCceeeCCCC
Confidence 3466789999999999999999999999999988889999999999 999999999 899999995 7 9999999
Q ss_pred CcccCC-------CceeeEEEecccCeeeeeceEEeCCCc--ccccCCCCCCCCCccccccccccCC---CC-CCCCCCC
Q 015319 182 SKDWGK-------GLLWWLDFTKLKGITIQGKGIIDGRGS--VWWQDYPYDDPIDDESKLIIPLHNN---TL-PYKPPTP 248 (409)
Q Consensus 182 ~~~~~~-------g~~~~i~~~~~~nVtI~G~G~IdG~G~--~~w~~~~~~~p~~~~~~~~~~~~~~---~~-~~~~~~~ 248 (409)
+++|.. .....++.+...+..|.++|.+|+.+. .||..... ....+ ...+.. +. .. .......
T Consensus 151 p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~-~~i~g-~~~i~g--~~~~~g~~~~~~~g~ 226 (542)
T COG5434 151 PKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNR-KEIWG-KGTIDG--NGYKRGDKWFSGLGA 226 (542)
T ss_pred hhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCce-EEEec-cceecC--ccccchhhhhhcccc
Confidence 999973 123344555555555555554444221 22211100 00000 000000 00 00 0000001
Q ss_pred ccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEee
Q 015319 249 IRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTS 328 (409)
Q Consensus 249 ~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~ 328 (409)
+..+..++ ..||..+.+.+|+||+++|++|.|++.|.+++..|++++++|++|.+.... |+|||++.+|+||+|++|
T Consensus 227 ~~~~i~~~--~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~ 303 (542)
T COG5434 227 VETRIGGK--GVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGC 303 (542)
T ss_pred hhhccccc--CcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEecc
Confidence 11122111 168999999999999999999999999999999999999999999997654 999999999999999999
Q ss_pred EEeeCCCeEEeCCC-----------ceeEEEEEEEEcCCCe-eEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeec
Q 015319 329 NLACGDDCVSIQTG-----------CSNVYVHNVNCGPGHG-ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396 (409)
Q Consensus 329 ~i~~gDD~Iai~sg-----------~~nV~I~n~~~~~g~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~ 396 (409)
+|+++||||++++| ++||.|+||++..+|| +.+||| +.+.|+||++|||.|.++.+|+||||..
T Consensus 304 ~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~ 379 (542)
T COG5434 304 RFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTND 379 (542)
T ss_pred EEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeec
Confidence 99999999999986 6899999999999997 899998 7889999999999999999999999999
Q ss_pred CCCCeEEEEEeC
Q 015319 397 VMIPSGTQCYNS 408 (409)
Q Consensus 397 G~~g~v~~~~~~ 408 (409)
|++|.|+||+..
T Consensus 380 ~~gG~v~nI~~~ 391 (542)
T COG5434 380 GRGGGVRNIVFE 391 (542)
T ss_pred ccceeEEEEEEe
Confidence 999999999863
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.91 E-value=4.9e-23 Score=208.14 Aligned_cols=226 Identities=16% Similarity=0.235 Sum_probs=177.4
Q ss_pred ceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEec-ceEEcCCCCcccC
Q 015319 108 SVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD-GTIIAPTGSKDWG 186 (409)
Q Consensus 108 ~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~-Gtl~~~~~~~~~~ 186 (409)
+.+++++|||++||.+|+|+|||+||++|. .++.+|.||+| +|+.+++.| +++++|..+ |.... .+.
T Consensus 36 r~~dv~~fGa~~dG~td~T~ALQaAIdaAa-~gG~tV~Lp~G-~Y~~G~L~L-----~spltL~G~~gAt~~-----vId 103 (455)
T TIGR03808 36 LGRDATQYGVRPNSPDDQTRALQRAIDEAA-RAQTPLALPPG-VYRTGPLRL-----PSGAQLIGVRGATRL-----VFT 103 (455)
T ss_pred cCCCHHHcCcCCCCcchHHHHHHHHHHHhh-cCCCEEEECCC-ceecccEEE-----CCCcEEEecCCcEEE-----EEc
Confidence 448999999999999999999999999765 45689999999 899999999 688999887 43210 001
Q ss_pred CCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEE
Q 015319 187 KGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALR 266 (409)
Q Consensus 187 ~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~ 266 (409)
.+ ...+...++++|+|+|. +|+|+|..|- .++.+|+
T Consensus 104 G~-~~lIiai~A~nVTIsGL-tIdGsG~dl~------------------------------------------~rdAgI~ 139 (455)
T TIGR03808 104 GG-PSLLSSEGADGIGLSGL-TLDGGGIPLP------------------------------------------QRRGLIH 139 (455)
T ss_pred CC-ceEEEEecCCCeEEEee-EEEeCCCccc------------------------------------------CCCCEEE
Confidence 11 45566788999999997 9999995431 2566899
Q ss_pred EEeeeeEEEeceEEecCCCCeEEeecCc----------------------cEEEEeEEEeCCCC----------------
Q 015319 267 FYGSFNVTVTGITIQNSPQCHLKFDNCI----------------------GVVVHDVSVSSPGD---------------- 308 (409)
Q Consensus 267 ~~~~~nv~I~gvti~ns~~~~i~~~~~~----------------------nV~I~n~~I~s~~~---------------- 308 (409)
+..|++++|++++|.++..|+|.+..|+ ++.|++.+|....+
T Consensus 140 v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~ 219 (455)
T TIGR03808 140 CQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTI 219 (455)
T ss_pred EccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcce
Confidence 9999999999999999988999999999 88888887765433
Q ss_pred ----------------CCCCCceeecCcccEEEEeeEEeeCC-CeEEeCCCceeEEEEEEEEcCCCeeEEEecCCCCCCC
Q 015319 309 ----------------SPNTDGIHLQNSKDVLIHTSNLACGD-DCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKA 371 (409)
Q Consensus 309 ----------------~~n~DGI~l~~s~nV~I~n~~i~~gD-D~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~~~~~ 371 (409)
....+||++..+.+++|++++|+.++ |+|.+.+ ++|+.|+++.|..-.=..+.++- .
T Consensus 220 v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhymf--s--- 293 (455)
T TIGR03808 220 VTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSEF--A--- 293 (455)
T ss_pred eeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEEE--e---
Confidence 45778999999999999999999998 9998888 68888888888863222444431 1
Q ss_pred cEEEEEEEeEEEecccceEEEEeec
Q 015319 372 CVSNITVRDVMMHNTMNGVRIKTWQ 396 (409)
Q Consensus 372 ~v~nI~v~n~~~~~~~~Gi~Ikt~~ 396 (409)
.+--.|+||++.+...|+.|-.+.
T Consensus 294 -~~g~~i~~N~~~g~~~G~av~nf~ 317 (455)
T TIGR03808 294 -FEGAVIANNTVDGAAVGVSVCNFN 317 (455)
T ss_pred -CCCcEEeccEEecCcceEEEEeec
Confidence 111457778888888888888764
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.88 E-value=3.6e-21 Score=179.53 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=142.3
Q ss_pred eEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeC-CcccCCCccccceEEEecc---e-EEcCCCCc
Q 015319 109 VFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVG-PMSFSGPYCQANIIFQLDG---T-IIAPTGSK 183 (409)
Q Consensus 109 ~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~-~i~l~g~~~~s~~~l~l~G---t-l~~~~~~~ 183 (409)
++||++|||++||++|||+|||+||+++...++++||||+| +|++. ++.+ .++++|+.+| + +.......
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~~g~~v~~P~G-~Y~i~~~l~~-----~s~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAAGGGVVYFPPG-TYRISGTLII-----PSNVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCSTTSEEEEE-SE-EEEESS-EEE------TTEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccCCCeEEEEcCc-EEEEeCCeEc-----CCCeEEEccCCCeeEEEecCccc
Confidence 48999999999999999999999997778888999999999 66665 5887 6899999985 3 33222222
Q ss_pred ccCCCceeeEEEec-ccCe--eeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCC
Q 015319 184 DWGKGLLWWLDFTK-LKGI--TIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSI 260 (409)
Q Consensus 184 ~~~~g~~~~i~~~~-~~nV--tI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (409)
.+.. ......+.. ..++ .|++ -+|++.+...- .
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~------------------------------------------~ 110 (225)
T PF12708_consen 75 SFSV-VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPN------------------------------------------N 110 (225)
T ss_dssp TSCC-EEEEEECCSCSCCEEEEEEE-EEEEETCGCE-------------------------------------------S
T ss_pred cccc-ccceeeeecCCCCceEEEEe-eEEEcccccCC------------------------------------------C
Confidence 2210 011111111 1122 2444 44555542110 0
Q ss_pred CceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC-cccEEEEeeEEeeCCCeEEe
Q 015319 261 KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN-SKDVLIHTSNLACGDDCVSI 339 (409)
Q Consensus 261 rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~-s~nV~I~n~~i~~gDD~Iai 339 (409)
...++.|..+.++.|+++++.+....++.+..++...+.+..... ++.+.. +.++.+.+|.+..+++++..
T Consensus 111 ~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~ 182 (225)
T PF12708_consen 111 NNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL 182 (225)
T ss_dssp CEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC
T ss_pred CceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe
Confidence 145788889999999999999988888888866665554443331 344433 35688899999999999433
Q ss_pred CCCceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEE
Q 015319 340 QTGCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVR 391 (409)
Q Consensus 340 ~sg~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~ 391 (409)
+ .++++|+||.+.. ..||.+... .+++|+|++|+++..||.
T Consensus 183 ~--~~~~~i~n~~~~~~~~~gi~i~~~---------~~~~i~n~~i~~~~~g~~ 225 (225)
T PF12708_consen 183 G--NNNITISNNTFEGNCGNGINIEGG---------SNIIISNNTIENCDDGID 225 (225)
T ss_dssp E--EEEEEEECEEEESSSSESEEEEEC---------SEEEEEEEEEESSSEEEE
T ss_pred e--cceEEEEeEEECCccceeEEEECC---------eEEEEEeEEEECCccCcC
Confidence 3 3899999999987 458888653 359999999999999874
No 11
>PLN02793 Probable polygalacturonase
Probab=99.67 E-value=9.2e-15 Score=151.00 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=116.1
Q ss_pred eEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Ia 338 (409)
.+.+.+|+||+|++++|.+.. ..+|++.+|++|+|+|++|++ .+|+|.+. +|+||+|+||.+..| .+|+
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~G-hGis 275 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPG-HGIS 275 (443)
T ss_pred EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCC-ccEE
Confidence 577889999999999998743 346999999999999999999 78999996 789999999999777 5799
Q ss_pred eCC--------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCC----------C
Q 015319 339 IQT--------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM----------I 399 (409)
Q Consensus 339 i~s--------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~----------~ 399 (409)
|++ +++||+|+||++.+ ..|+.|.+.- +..+.|+||+|+|++|.+..++|.|..+... .
T Consensus 276 IGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~--g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~ 353 (443)
T PLN02793 276 IGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ--GGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSA 353 (443)
T ss_pred EecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeC--CCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCC
Confidence 987 37999999999998 5799999862 2356899999999999999999999986532 1
Q ss_pred CeEEEEEeC
Q 015319 400 PSGTQCYNS 408 (409)
Q Consensus 400 g~v~~~~~~ 408 (409)
..++||+.+
T Consensus 354 v~I~nI~~~ 362 (443)
T PLN02793 354 VKVENISFV 362 (443)
T ss_pred eEEEeEEEE
Confidence 347777653
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.62 E-value=4.6e-14 Score=145.31 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=114.6
Q ss_pred eEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Ia 338 (409)
.+++..|+||+|++++|.+.. ..+|++.+|+||+|+|++|.+ .+|+|.+. +++||+|+||++..| .+|+
T Consensus 217 ~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~n~~c~~G-HGis 290 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQINDITCGPG-HGIS 290 (431)
T ss_pred EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEEeEEEECC-CCEE
Confidence 678899999999999998642 346999999999999999999 78999996 478999999999765 6799
Q ss_pred eCC--------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCC---------CC
Q 015319 339 IQT--------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM---------IP 400 (409)
Q Consensus 339 i~s--------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~---------~g 400 (409)
|++ +.+||+|+||++.+ ..|+.|.+.- +..+.|+||+|+|++|++..++|.|...... ..
T Consensus 291 IGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~--Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v 368 (431)
T PLN02218 291 IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ--GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAV 368 (431)
T ss_pred ECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC--CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCe
Confidence 987 37899999999998 5799999862 3457899999999999999999999976432 23
Q ss_pred eEEEEEe
Q 015319 401 SGTQCYN 407 (409)
Q Consensus 401 ~v~~~~~ 407 (409)
.++||..
T Consensus 369 ~I~nI~~ 375 (431)
T PLN02218 369 QVKNVVY 375 (431)
T ss_pred EEEEEEE
Confidence 4677765
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.62 E-value=9.1e-14 Score=142.12 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=114.6
Q ss_pred eEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Ia 338 (409)
.+++..|+||+|++++|.+.. ..+|++++|++|+|+|++|.+ .+|+|.+. +++||+|+||....+ .+|+
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~g-hGis 253 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPG-HGIS 253 (404)
T ss_pred EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCC-CcEE
Confidence 678899999999999998643 345999999999999999999 78999996 578999999999766 6799
Q ss_pred eCC--------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC----------CC
Q 015319 339 IQT--------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV----------MI 399 (409)
Q Consensus 339 i~s--------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G----------~~ 399 (409)
|++ +.+||+|+||++.+ .+|+.|.+.-.....+.|+||+|+|++|++..++|.|..... ..
T Consensus 254 iGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~ 333 (404)
T PLN02188 254 VGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSG 333 (404)
T ss_pred eCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCC
Confidence 987 37999999999998 579999875322235689999999999999999999987432 12
Q ss_pred CeEEEEEe
Q 015319 400 PSGTQCYN 407 (409)
Q Consensus 400 g~v~~~~~ 407 (409)
..++||+.
T Consensus 334 v~I~nIt~ 341 (404)
T PLN02188 334 VTLSDIYF 341 (404)
T ss_pred cEEEeEEE
Confidence 45677765
No 14
>PLN03010 polygalacturonase
Probab=99.60 E-value=1.4e-13 Score=140.69 Aligned_cols=170 Identities=19% Similarity=0.259 Sum_probs=134.0
Q ss_pred ccceEEEecceEEcCCCCcccCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCC
Q 015319 165 QANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYK 244 (409)
Q Consensus 165 ~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (409)
.+++.|...|+|-... ..|.. ++.|.+++|+.|+|-=+.+..
T Consensus 138 v~nv~I~G~G~IDG~G--~~ww~----~l~~~~~~nv~v~gitl~nsp-------------------------------- 179 (409)
T PLN03010 138 VSGLMIDGSGTIDGRG--SSFWE----ALHISKCDNLTINGITSIDSP-------------------------------- 179 (409)
T ss_pred ccccEEeeceEEeCCC--ccccc----eEEEEeecCeEEeeeEEEcCC--------------------------------
Confidence 4788888888886422 12321 488999999999982122111
Q ss_pred CCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC-
Q 015319 245 PPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN- 319 (409)
Q Consensus 245 ~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~- 319 (409)
...+++.+|+||+|++++|.++. ..+|++..|++|+|+|++|.+ .+|+|.+.+
T Consensus 180 -----------------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~-----gDDcIaiksg 237 (409)
T PLN03010 180 -----------------KNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQT-----GDDCIAINSG 237 (409)
T ss_pred -----------------ceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEec-----CCCeEEecCC
Confidence 12578889999999999999753 335999999999999999999 789999975
Q ss_pred cccEEEEeeEEeeCCCeEEeCCC--------ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceE
Q 015319 320 SKDVLIHTSNLACGDDCVSIQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGV 390 (409)
Q Consensus 320 s~nV~I~n~~i~~gDD~Iai~sg--------~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi 390 (409)
+.++.|+++....+ .+|+|++- .+||+|+||++.+ .+|+.|.+.. +..+.|+||+|+|++|++..++|
T Consensus 238 s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~--G~~G~v~nItf~nI~m~~v~~pI 314 (409)
T PLN03010 238 SSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQ--GGQGYARNISFENITLINTKNPI 314 (409)
T ss_pred CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEec--CCCEEEEEeEEEeEEEecCCccE
Confidence 45888887777654 57999873 7999999999998 4799999862 24568999999999999999999
Q ss_pred EEEeecC
Q 015319 391 RIKTWQV 397 (409)
Q Consensus 391 ~Ikt~~G 397 (409)
.|.....
T Consensus 315 ~I~q~Y~ 321 (409)
T PLN03010 315 IIDQQYI 321 (409)
T ss_pred EEEeecc
Confidence 9988653
No 15
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.60 E-value=1.1e-13 Score=142.50 Aligned_cols=174 Identities=19% Similarity=0.263 Sum_probs=137.1
Q ss_pred ccceEEEecceEEcCCCCcccCC---CceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCC
Q 015319 165 QANIIFQLDGTIIAPTGSKDWGK---GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTL 241 (409)
Q Consensus 165 ~s~~~l~l~Gtl~~~~~~~~~~~---g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~ 241 (409)
..+++|...|+|-... . .|.. ..-..+.|.+++|+.|+|-=+.+..
T Consensus 112 ~~~i~I~G~GtIDGqG-~-~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp----------------------------- 160 (456)
T PLN03003 112 IEGLVIEGDGEINGQG-S-SWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP----------------------------- 160 (456)
T ss_pred ccceEEeccceEeCCc-h-hhhhcccCCceEEEEEecCCcEEeCeEEecCC-----------------------------
Confidence 4677888778876533 1 2332 1233688999999999982111111
Q ss_pred CCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceee
Q 015319 242 PYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHL 317 (409)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l 317 (409)
-..+++.+|+||+|++++|.+.. ..+|++.+|+||+|+|++|.+ .+|+|.+
T Consensus 161 --------------------~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIai 215 (456)
T PLN03003 161 --------------------MAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAI 215 (456)
T ss_pred --------------------cEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEe
Confidence 12678899999999999999743 345999999999999999999 7899999
Q ss_pred c-CcccEEEEeeEEeeCCCeEEeCCC--------ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 318 Q-NSKDVLIHTSNLACGDDCVSIQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 318 ~-~s~nV~I~n~~i~~gDD~Iai~sg--------~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
. +|+||+|+||++..+ .+|+|++- .+||+|+||++.+ .+|+.|.+.- +..+.|+||+|+|++|.+..
T Consensus 216 ksgs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~--Gg~G~v~nItf~nI~m~nV~ 292 (456)
T PLN03003 216 NSGTSNIHISGIDCGPG-HGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQ--GGSGYARMITFNGITLDNVE 292 (456)
T ss_pred CCCCccEEEEeeEEECC-CCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeC--CCCeEEEEEEEEeEEecCcc
Confidence 6 467999999999876 68999872 7999999999998 5799999862 23467999999999999999
Q ss_pred ceEEEEeecC
Q 015319 388 NGVRIKTWQV 397 (409)
Q Consensus 388 ~Gi~Ikt~~G 397 (409)
++|.|....+
T Consensus 293 ~pI~Idq~Y~ 302 (456)
T PLN03003 293 NPIIIDQFYN 302 (456)
T ss_pred ceEEEEcccC
Confidence 9999988764
No 16
>PLN02155 polygalacturonase
Probab=99.56 E-value=2.6e-13 Score=138.22 Aligned_cols=138 Identities=20% Similarity=0.222 Sum_probs=114.8
Q ss_pred eEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC-cccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN-SKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~-s~nV~I~n~~i~~gDD~Ia 338 (409)
.+++.+|+||+|++++|.+.. ..+|++.+|++|+|+|++|.+ .+|+|.+.+ |+||+|+||.+..| .+|+
T Consensus 170 ~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~G-hGis 243 (394)
T PLN02155 170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPG-HGVS 243 (394)
T ss_pred EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECC-ceEE
Confidence 678899999999999999753 246999999999999999999 789999974 78999999999876 6799
Q ss_pred eCCC--------ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCC----------C
Q 015319 339 IQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM----------I 399 (409)
Q Consensus 339 i~sg--------~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~----------~ 399 (409)
|++- .+||+|+||++.+ .+|+.|.+.-+ ...+.|+||+|+|++|++..++|.|...... .
T Consensus 244 IGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~ 322 (394)
T PLN02155 244 IGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSG 322 (394)
T ss_pred eccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCC
Confidence 9882 6999999999998 57999988411 1357899999999999999999999764421 1
Q ss_pred CeEEEEEeC
Q 015319 400 PSGTQCYNS 408 (409)
Q Consensus 400 g~v~~~~~~ 408 (409)
..++||+.+
T Consensus 323 v~i~~It~~ 331 (394)
T PLN02155 323 VKISQVTYK 331 (394)
T ss_pred eEEEEEEEE
Confidence 257777654
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.55 E-value=2.7e-13 Score=135.46 Aligned_cols=136 Identities=23% Similarity=0.266 Sum_probs=113.9
Q ss_pred eEEEEeeeeEEEeceEEecCCC----CeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcc-cEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQ----CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK-DVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~----~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~-nV~I~n~~i~~gDD~Ia 338 (409)
.+.+..|+|++|++++|.+... .+|++..|++|+|+||.|++ .+|+|.+.+.+ ||+|+||++..+ .+++
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~g-hGis 190 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGG-HGIS 190 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESS-SEEE
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEecc-ccce
Confidence 5788899999999999997653 36999999999999999999 79999998766 999999999865 6698
Q ss_pred eCC---C-----ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCC---------CC
Q 015319 339 IQT---G-----CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM---------IP 400 (409)
Q Consensus 339 i~s---g-----~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~---------~g 400 (409)
|++ + .+||+|+||++.+ .+|+.|.+.- ...+.|+||+|+|++|++..++|.|...... .+
T Consensus 191 iGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~ 268 (326)
T PF00295_consen 191 IGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGV 268 (326)
T ss_dssp EEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSS
T ss_pred eeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCc
Confidence 865 2 5899999999998 5799998852 3567899999999999999999999875332 23
Q ss_pred eEEEEEe
Q 015319 401 SGTQCYN 407 (409)
Q Consensus 401 ~v~~~~~ 407 (409)
.++||..
T Consensus 269 ~i~nI~~ 275 (326)
T PF00295_consen 269 SISNITF 275 (326)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 5677654
No 18
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.52 E-value=5e-13 Score=132.85 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCcEEEECCceEEEe-CCcccCCCccccceEEEec
Q 015319 129 FEAAWAAACKVEASIMVVPAESVFLV-GPMSFSGPYCQANIIFQLD 173 (409)
Q Consensus 129 iq~Ai~~a~~~gg~~v~vP~G~~y~~-~~i~l~g~~~~s~~~l~l~ 173 (409)
||+|+++|.. |.+|+||+| +|.. ++|.+. +++++|...
T Consensus 1 iQ~Ai~~A~~--GDtI~l~~G-~Y~~~~~l~I~----~~~Iti~G~ 39 (314)
T TIGR03805 1 LQEALIAAQP--GDTIVLPEG-VFQFDRTLSLD----ADGVTIRGA 39 (314)
T ss_pred CHhHHhhCCC--CCEEEECCC-EEEcceeEEEe----CCCeEEEec
Confidence 6899987654 899999999 7754 556653 245555544
No 19
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.48 E-value=3.4e-12 Score=131.13 Aligned_cols=195 Identities=21% Similarity=0.261 Sum_probs=113.3
Q ss_pred CcEEEECCceEEEeCC---cccCCCccccc-eEEEec-ceEEcCCCCcccCCCceeeEEEecccCeeeeeceEEeCCCcc
Q 015319 141 ASIMVVPAESVFLVGP---MSFSGPYCQAN-IIFQLD-GTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSV 215 (409)
Q Consensus 141 g~~v~vP~G~~y~~~~---i~l~g~~~~s~-~~l~l~-Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~ 215 (409)
..+|||++| +|.++. +.| .++ ..++++ |.++. .++......+|+.|.|.|++.|.-..
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L-----~sn~~~VYlApGAyVk-----------GAf~~~~~~~nv~i~G~GVLSGe~Yv 294 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRL-----PSNTKWVYLAPGAYVK-----------GAFEYTDTQQNVKITGRGVLSGEQYV 294 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE------TT--EEEE-TTEEEE-----------S-EEE---SSEEEEESSSEEE-TTS-
T ss_pred cceEEeCCc-eEEeCCCccEEE-----CCCccEEEEcCCcEEE-----------EEEEEccCCceEEEEeeEEEcCccee
Confidence 369999999 777765 565 455 477887 65543 23333468899999999999999766
Q ss_pred cccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEE---EEeeeeEEEeceEEecCCCCeEEeec
Q 015319 216 WWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALR---FYGSFNVTVTGITIQNSPQCHLKFDN 292 (409)
Q Consensus 216 ~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~---~~~~~nv~I~gvti~ns~~~~i~~~~ 292 (409)
|-.. +......+ ....+.+...=.++. ..++.+++++|++|.++|+|.+.+..
T Consensus 295 y~A~-----~~e~y~~~-------------------s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g 350 (582)
T PF03718_consen 295 YEAD-----TEESYLHL-------------------SGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYG 350 (582)
T ss_dssp TTBB-----CCCTTSB--------------------SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEES
T ss_pred Eecc-----CCCCcccc-------------------ccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecC
Confidence 5211 11110000 000122222223454 34567999999999999999999985
Q ss_pred Cc----cEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCC-e--eEEEecC
Q 015319 293 CI----GVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGH-G--ISIGSLG 365 (409)
Q Consensus 293 ~~----nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~-G--isIGs~g 365 (409)
-+ ...|+|.++-..+ ..++|||.+. ++-+|+||++.+.||+|-+.- +++.|+||+++..+ | |.+|-.
T Consensus 351 ~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~- 424 (582)
T PF03718_consen 351 NENDKFSMNISNYKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT- 424 (582)
T ss_dssp SSGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS-
T ss_pred CccccccceeeceeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-
Confidence 44 4789999998653 3699999996 677889999999999997764 89999999999843 3 777753
Q ss_pred CCCCCCcEEEEEEEeEEEecc
Q 015319 366 KDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 366 ~~~~~~~v~nI~v~n~~~~~~ 386 (409)
...++||.|+|+.+..+
T Consensus 425 ----pr~isnv~veni~IIh~ 441 (582)
T PF03718_consen 425 ----PRNISNVSVENIDIIHN 441 (582)
T ss_dssp -------EEEEEEEEEEEEE-
T ss_pred ----ccccCceEEeeeEEEee
Confidence 44599999999999854
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=9e-11 Score=122.96 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=104.4
Q ss_pred eeEEEEeeeeEEEeceEEecCCC---CeEEeecCccEEEEeEEEeCCCCCCCCCceeec------------CcccEEEEe
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQ---CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ------------NSKDVLIHT 327 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~---~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~------------~s~nV~I~n 327 (409)
..+++..|+|++++|++|++... .++++.+|+||.|++|+|++ .+|+|.+. .+++|+|+|
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-----gDD~I~iksg~~~~~~~~~~~~~~i~i~~ 336 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-----GDDCIAIKSGAGLDGKKGYGPSRNIVIRN 336 (542)
T ss_pred EEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec-----CCceEEeecccCCcccccccccccEEEec
Confidence 57889999999999999997654 36999999999999999999 55666654 368899999
Q ss_pred eEEeeCCCeEEeCC----CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEE
Q 015319 328 SNLACGDDCVSIQT----GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIK 393 (409)
Q Consensus 328 ~~i~~gDD~Iai~s----g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ik 393 (409)
|++..+..++.+++ +.+||+++||.+.. ..|+.|++.- ..++.++||+|+++.|.+...-..|-
T Consensus 337 c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~--~~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 337 CYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTND--GRGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred ceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeec--ccceeEEEEEEecccccCcccceeee
Confidence 99999988888866 48999999999998 7899999863 35688999999999999875444444
No 21
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.72 E-value=1e-07 Score=83.29 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=42.2
Q ss_pred eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCc
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~ 343 (409)
+|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+++....+++|++|++.....++.+. ..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 345555666666666666666666666666666666666666 344555555455555555554433333333 23
Q ss_pred eeEEEEEEEEcC
Q 015319 344 SNVYVHNVNCGP 355 (409)
Q Consensus 344 ~nV~I~n~~~~~ 355 (409)
.++.|++|.+..
T Consensus 76 ~~~~i~~~~i~~ 87 (158)
T PF13229_consen 76 SNITIENNRIEN 87 (158)
T ss_dssp CS-EEES-EEEC
T ss_pred CCceecCcEEEc
Confidence 444444444444
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.68 E-value=1.1e-07 Score=90.58 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=84.1
Q ss_pred EEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCC-----CCCceee------cCcccEEEEeeEEeeCC-
Q 015319 267 FYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSP-----NTDGIHL------QNSKDVLIHTSNLACGD- 334 (409)
Q Consensus 267 ~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~-----n~DGI~l------~~s~nV~I~n~~i~~gD- 334 (409)
|+.|+++++++++|.|+... +..|++|.++|+.+.+.+... .-|++.+ ++++||.|+|+++.+.|
T Consensus 94 fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDA 170 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDA 170 (277)
T ss_pred hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEecccc
Confidence 56788888888888887654 346888888888885544322 2334433 45788889988888765
Q ss_pred ----CeEEeCCC----------ceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEe
Q 015319 335 ----DCVSIQTG----------CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKT 394 (409)
Q Consensus 335 ----D~Iai~sg----------~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt 394 (409)
..|.+... ++||++.||++.+.+|++. +.|++.+||+|.+++..+.-.+
T Consensus 171 FWn~eNVtVyDS~i~GEYLgW~SkNltliNC~I~g~QpLCY-----------~~~L~l~nC~~~~tdlaFEyS~ 233 (277)
T PF12541_consen 171 FWNCENVTVYDSVINGEYLGWNSKNLTLINCTIEGTQPLCY-----------CDNLVLENCTMIDTDLAFEYSN 233 (277)
T ss_pred cccCCceEEEcceEeeeEEEEEcCCeEEEEeEEeccCccEe-----------ecceEEeCcEeecceeeeeecc
Confidence 23444331 7999999999999999887 6899999999999988776644
No 23
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.64 E-value=1.4e-06 Score=86.94 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=98.0
Q ss_pred ceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC-
Q 015319 262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ- 340 (409)
Q Consensus 262 p~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~- 340 (409)
-..|.+..|++++|++.++......+|.+..|+++.|+++++.. +..||+++.|.++.|+++.+.+...+|.+.
T Consensus 107 ~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~-----n~~GI~i~~S~~~~v~~N~~~~N~~Gi~v~~ 181 (314)
T TIGR03805 107 AYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEE-----NVAGIEIENSQNADVYNNIATNNTGGILVFD 181 (314)
T ss_pred cceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEcc-----CcceEEEEecCCcEEECCEEeccceeEEEee
Confidence 34788889999999999999887778999999999999999976 678999999999999999998877888882
Q ss_pred ------CCceeEEEEEEEEcCCC--eeEEEe-cCCC-CCCCc-----EEEEEEEeEEEeccc-ceEEEEeec
Q 015319 341 ------TGCSNVYVHNVNCGPGH--GISIGS-LGKD-NTKAC-----VSNITVRDVMMHNTM-NGVRIKTWQ 396 (409)
Q Consensus 341 ------sg~~nV~I~n~~~~~g~--GisIGs-~g~~-~~~~~-----v~nI~v~n~~~~~~~-~Gi~Ikt~~ 396 (409)
-.++++.|+++++.+.. .+.+.+ .... ..+.+ .+++.|+|++|.++. .||.|.++.
T Consensus 182 ~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~ 253 (314)
T TIGR03805 182 LPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSYH 253 (314)
T ss_pred cCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEecc
Confidence 23689999999887631 111111 0000 00111 279999999999765 888887764
No 24
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.43 E-value=8e-06 Score=77.59 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=82.4
Q ss_pred eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCc
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~ 343 (409)
.+.+..+.+++|++.++.+. ..++++..|.+++|+++++.. +.+||.+..+.+.+|++++|.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 45677788888888888877 677888888888888888887 4488888877767888888877666777766 4
Q ss_pred eeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecc-cceEE
Q 015319 344 SNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNT-MNGVR 391 (409)
Q Consensus 344 ~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~-~~Gi~ 391 (409)
.+.+|+++++.. ..||.+... .+.+|++++|.+. ..||+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceE
Confidence 666777777764 456776542 4667777777776 67777
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.41 E-value=4.6e-06 Score=72.71 Aligned_cols=121 Identities=22% Similarity=0.319 Sum_probs=76.6
Q ss_pred eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC-CCeEEeCC
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG-DDCVSIQT 341 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g-DD~Iai~s 341 (409)
.++.+..+..++|++.+|.+ ...++.+....++.+++++|... ..|+.+..+.+++|++|.+... +.+|.+..
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-----GSGIYVSGSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEECSSS-SCE-TC
T ss_pred eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-----cceEEEEecCCceecCcEEEcCCCccEEEec
Confidence 36777777778888888888 67778888888888888888873 3788888888888888888765 44787774
Q ss_pred CceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc-ceEEEEeec
Q 015319 342 GCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQ 396 (409)
Q Consensus 342 g~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~ 396 (409)
..++++|++|++.. +.|+.+.... -.+++|++|++.+.. +||++....
T Consensus 98 ~~~~~~i~~n~~~~~~~~gi~~~~~~-------~~~~~i~~n~i~~~~~~gi~~~~~~ 148 (158)
T PF13229_consen 98 SSSNVTIENNTIHNNGGSGIYLEGGS-------SPNVTIENNTISNNGGNGIYLISGS 148 (158)
T ss_dssp EECS-EEES-EEECCTTSSCEEEECC---------S-EEECEEEECESSEEEE-TT-S
T ss_pred cCCCEEEEeEEEEeCcceeEEEECCC-------CCeEEEEEEEEEeCcceeEEEECCC
Confidence 25778888888887 3567775531 236778888888765 666655443
No 26
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=4.1e-05 Score=74.53 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=93.7
Q ss_pred eEEEEeeeeEEEeceEEecCC-----CCeEEe-ecCccEEEEeEEEeCCCC---CCCCCc-eee-cCcccEEEEeeEEee
Q 015319 264 ALRFYGSFNVTVTGITIQNSP-----QCHLKF-DNCIGVVVHDVSVSSPGD---SPNTDG-IHL-QNSKDVLIHTSNLAC 332 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~-----~~~i~~-~~~~nV~I~n~~I~s~~~---~~n~DG-I~l-~~s~nV~I~n~~i~~ 332 (409)
.|.+..+.||.|++++|.... +..|.+ ....++.|++|++..... ....|| +++ ..+..|+|.+|.|..
T Consensus 118 gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhd 197 (345)
T COG3866 118 GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHD 197 (345)
T ss_pred eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeec
Confidence 355666788999999998777 345777 788999999999987421 123343 233 246789999999998
Q ss_pred CCCeEEeCCC--------ceeEEEEEEEEcC--CCe--eEEEecCCC----------C---CCCcEEEEEEEeEEEeccc
Q 015319 333 GDDCVSIQTG--------CSNVYVHNVNCGP--GHG--ISIGSLGKD----------N---TKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 333 gDD~Iai~sg--------~~nV~I~n~~~~~--g~G--isIGs~g~~----------~---~~~~v~nI~v~n~~~~~~~ 387 (409)
.|-.+-++.. -.+|++++|.|.+ .++ |++|..--+ + +-+.-..|++|+++|.++.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~ 277 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGS 277 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEEEecceeccCC
Confidence 8887777653 3568888887776 222 555432110 0 1123368999999999877
Q ss_pred ceEEEEeecCCCCeEE
Q 015319 388 NGVRIKTWQVMIPSGT 403 (409)
Q Consensus 388 ~Gi~Ikt~~G~~g~v~ 403 (409)
.++.+---.|-+|+.+
T Consensus 278 ~~~~f~dt~~~~GY~~ 293 (345)
T COG3866 278 EGLGFLDTKGTSGYAN 293 (345)
T ss_pred CCceeeecCCccceEE
Confidence 6665554444467766
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.30 E-value=9.5e-06 Score=77.09 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=100.8
Q ss_pred eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG 342 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg 342 (409)
..+.+..++++.|++.++.+. ..++.+..+.+++|++++|.. +..||++..+++++|+++.+.....+|.+...
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s 87 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMGS 87 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEcC
Confidence 478899999999999999866 567899999999999999999 58999999999999999999988799999885
Q ss_pred ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEee
Q 015319 343 CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW 395 (409)
Q Consensus 343 ~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~ 395 (409)
..+ +|+++++.. ..||.+.. ..+.+|+++++.+...||.|..-
T Consensus 88 ~~~-~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s 131 (236)
T PF05048_consen 88 SNN-TISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS 131 (236)
T ss_pred CCc-EEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC
Confidence 544 999999998 45787754 24588999999988899998765
No 28
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=1.4e-05 Score=77.60 Aligned_cols=123 Identities=16% Similarity=0.234 Sum_probs=96.6
Q ss_pred EEEEeeeeEEEeceEEe-cCCCCeEEeecCccEEEEeEEEeCCCCC-CCCCceee-cCcccEEEEeeEEee---------
Q 015319 265 LRFYGSFNVTVTGITIQ-NSPQCHLKFDNCIGVVVHDVSVSSPGDS-PNTDGIHL-QNSKDVLIHTSNLAC--------- 332 (409)
Q Consensus 265 i~~~~~~nv~I~gvti~-ns~~~~i~~~~~~nV~I~n~~I~s~~~~-~n~DGI~l-~~s~nV~I~n~~i~~--------- 332 (409)
+.+.-|.|.+|.|+--. --..|++.+...+||.|+|++|...... ++.|+|.+ ..++||.|++|+|..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 77788999999887532 1225778888999999999999975421 24699999 788999999999975
Q ss_pred CCCeEEeCCCceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 333 GDDCVSIQTGCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 333 gDD~Iai~sg~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
+|..+-|+-++.+|+|.+|.+.. ..++-+|+.......+.-.+|++.+|.|+++.
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 45568888889999999999998 45677787654444455678999999998763
No 29
>smart00656 Amb_all Amb_all domain.
Probab=98.22 E-value=1.1e-05 Score=74.72 Aligned_cols=92 Identities=20% Similarity=0.321 Sum_probs=47.6
Q ss_pred CccEEEEeEEEeCCCC--CCCCCceeecCcccEEEEeeEEeeC----------CCeEEeCCCceeEEEEEEEEcCC-Cee
Q 015319 293 CIGVVVHDVSVSSPGD--SPNTDGIHLQNSKDVLIHTSNLACG----------DDCVSIQTGCSNVYVHNVNCGPG-HGI 359 (409)
Q Consensus 293 ~~nV~I~n~~I~s~~~--~~n~DGI~l~~s~nV~I~n~~i~~g----------DD~Iai~sg~~nV~I~n~~~~~g-~Gi 359 (409)
++||.|+|++|+.... ....|+|.++.+++|.|++|.|..+ |..+.++.++.+|+|.+|.|..- .++
T Consensus 39 ~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~ 118 (190)
T smart00656 39 VSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVM 118 (190)
T ss_pred cceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEE
Confidence 4444444444443321 1245666666666666666666654 33455565666666666666542 245
Q ss_pred EEEecCCCCCCCcEEEEEEEeEEEec
Q 015319 360 SIGSLGKDNTKACVSNITVRDVMMHN 385 (409)
Q Consensus 360 sIGs~g~~~~~~~v~nI~v~n~~~~~ 385 (409)
-||+.-.+ ......+|++.+|.+.+
T Consensus 119 liG~~d~~-~~~~~~~vT~h~N~~~~ 143 (190)
T smart00656 119 LLGHSDSD-TDDGKMRVTIAHNYFGN 143 (190)
T ss_pred EEccCCCc-cccccceEEEECcEEcC
Confidence 55543111 11123456666666654
No 30
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.11 E-value=0.00012 Score=70.42 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=52.9
Q ss_pred EEEEeeeeEEEeceEEecC---CCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCc------ccEEEEeeEEeeCCC
Q 015319 265 LRFYGSFNVTVTGITIQNS---PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNS------KDVLIHTSNLACGDD 335 (409)
Q Consensus 265 i~~~~~~nv~I~gvti~ns---~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s------~nV~I~n~~i~~gDD 335 (409)
+.+....+.+|+|++|.|. ...++.+..+ +.+|+|++|.. ...+||.+... .+++|.+..+.....
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~----~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~ 165 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTN----NGREGIFVTGTSANPGINGNVISGNSIYFNKT 165 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEEC----CccccEEEEeeecCCcccceEeecceEEecCc
Confidence 4455677888999999988 2334666555 88888888887 34667765432 344455555444444
Q ss_pred eEEeCCCce--eEEEEEEEEcC-CCeeEE
Q 015319 336 CVSIQTGCS--NVYVHNVNCGP-GHGISI 361 (409)
Q Consensus 336 ~Iai~sg~~--nV~I~n~~~~~-g~GisI 361 (409)
+|++..... +-.|+|+.+.. ..||.+
T Consensus 166 Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~~ 194 (246)
T PF07602_consen 166 GISISDNAAPVENKIENNIIENNNIGIVA 194 (246)
T ss_pred CeEEEcccCCccceeeccEEEeCCcCeEe
Confidence 555543211 12445555554 335443
No 31
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.11 E-value=3.6e-05 Score=79.11 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=56.0
Q ss_pred eEEEEeeeeEEEeceEEecCC------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEe-eCCCe
Q 015319 264 ALRFYGSFNVTVTGITIQNSP------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLA-CGDDC 336 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~-~gDD~ 336 (409)
++.-..++||+|+|++|.++. ...|++..|++++|++++|... ..-||+++.|+ ..|.++.|. ..+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gs----g~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGS----GGNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcC----CcceEEEEcCc-ceEecceEeccccce
Confidence 455668899999999999887 3358889999999999999983 13677777776 333333332 22333
Q ss_pred EEeCCCceeEEEEEEEEcC
Q 015319 337 VSIQTGCSNVYVHNVNCGP 355 (409)
Q Consensus 337 Iai~sg~~nV~I~n~~~~~ 355 (409)
|.+.. ++++.|+++++.+
T Consensus 183 I~lw~-S~g~~V~~N~I~g 200 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIG 200 (455)
T ss_pred EEEec-cCCCEEECCEEEc
Confidence 33322 3444444444444
No 32
>PLN02634 probable pectinesterase
Probab=98.04 E-value=0.00092 Score=67.52 Aligned_cols=110 Identities=9% Similarity=0.002 Sum_probs=69.5
Q ss_pred EEEeeeeEEEeceEEecCCC---------CeE-EeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319 266 RFYGSFNVTVTGITIQNSPQ---------CHL-KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD 335 (409)
Q Consensus 266 ~~~~~~nv~I~gvti~ns~~---------~~i-~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD 335 (409)
....++++..+||+|+|+.. ..+ .....+...+.+|.|.. ..|=+.... -.-..+||+|...=|
T Consensus 144 v~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G-----~QDTL~~~~-gR~yf~~CyIeG~VD 217 (359)
T PLN02634 144 VTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYG-----AQDTLCDDA-GRHYFKECYIEGSID 217 (359)
T ss_pred EEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEec-----ccceeeeCC-CCEEEEeeEEccccc
Confidence 33456789999999998842 122 22357889999999998 455554332 357788999886555
Q ss_pred eEEeCCCceeEEEEEEEEcCC---CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 336 CVSIQTGCSNVYVHNVNCGPG---HGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 336 ~Iai~sg~~nV~I~n~~~~~g---~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
=|. +. -...++||++..- .| .|-..++. ....-.-..|.||++.+.
T Consensus 218 FIF-G~--g~a~Fe~C~I~s~~~~~g-~ITA~~R~-~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 218 FIF-GN--GRSMYKDCELHSIASRFG-SIAAHGRT-CPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred EEc-CC--ceEEEeccEEEEecCCCc-EEEeCCCC-CCCCCcEEEEEcCEEcCC
Confidence 442 33 4668999988752 23 22222221 122235789999999764
No 33
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.98 E-value=5.7e-05 Score=70.60 Aligned_cols=112 Identities=28% Similarity=0.397 Sum_probs=75.3
Q ss_pred eeEEEece----EEecCCCCeEEee-cCccEEEEeEEEeCC-----------CCCCCCCceeecCcccEEEEeeEEeeC-
Q 015319 271 FNVTVTGI----TIQNSPQCHLKFD-NCIGVVVHDVSVSSP-----------GDSPNTDGIHLQNSKDVLIHTSNLACG- 333 (409)
Q Consensus 271 ~nv~I~gv----ti~ns~~~~i~~~-~~~nV~I~n~~I~s~-----------~~~~n~DGI~l~~s~nV~I~n~~i~~g- 333 (409)
.|.+|.|. +|.+ +++.+. .++||.|+|++|+.. ......|+|.+..++||.|++|.+..+
T Consensus 21 snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~ 97 (200)
T PF00544_consen 21 SNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGN 97 (200)
T ss_dssp SSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETT
T ss_pred CCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccc
Confidence 45566653 3333 355555 788888888888871 223578999999999999999998765
Q ss_pred --------CCeEEeCCCceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 334 --------DDCVSIQTGCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 334 --------DD~Iai~sg~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
|..+.++.++.+|+|.+|.+... .+.-+|+......... .+|++.+|.+.++
T Consensus 98 ~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 98 FECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp S-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred cccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 55688888899999999999873 3566776322222334 8999999999865
No 34
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.93 E-value=0.0005 Score=70.64 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHhhcCCcEEEECCceEEE
Q 015319 125 DTKAFEAAWAAACKVEASIMVVPAESVFL 153 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~ 153 (409)
+.++||+|++.|.. |.+|++..| +|.
T Consensus 3 s~~~lq~Ai~~a~p--GD~I~L~~G-ty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNAKP--GDTIVLADG-TYK 28 (425)
T ss_dssp SHHHHHHHHHH--T--T-EEEE-SE-EEE
T ss_pred CHHHHHHHHHhCCC--CCEEEECCc-eee
Confidence 57899999987653 999999999 885
No 35
>PLN02304 probable pectinesterase
Probab=97.80 E-value=0.0054 Score=62.43 Aligned_cols=111 Identities=10% Similarity=0.048 Sum_probs=69.2
Q ss_pred EEEEeeeeEEEeceEEecCCC---------CeEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC
Q 015319 265 LRFYGSFNVTVTGITIQNSPQ---------CHLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD 334 (409)
Q Consensus 265 i~~~~~~nv~I~gvti~ns~~---------~~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD 334 (409)
-....++++..++|+|+|+.. ..+- ....+...+.+|.|.. .+|=+.... -.-..+||+|...=
T Consensus 156 Tv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G-----~QDTLy~~~-gR~Yf~~CyIeG~V 229 (379)
T PLN02304 156 SVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFG-----AQDTLHDDR-GRHYFKDCYIQGSI 229 (379)
T ss_pred EEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEec-----ccceeEeCC-CCEEEEeeEEcccc
Confidence 344467889999999998741 1222 2458889999999998 455554433 35778899998654
Q ss_pred CeEEeCCCceeEEEEEEEEcC-C----------CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 335 DCVSIQTGCSNVYVHNVNCGP-G----------HGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 335 D~Iai~sg~~nV~I~n~~~~~-g----------~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
|=| ++. -...++||.+.. . .| .|-..++. ....-.-..|.||++.+.
T Consensus 230 DFI-FG~--g~A~Fe~C~I~s~~~~~~~g~~~~~G-~ITA~~Rt-~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 230 DFI-FGD--ARSLYENCRLISMANPVPPGSKSING-AVTAHGRT-SKDENTGFSFVNCTIGGT 287 (379)
T ss_pred cEE-ecc--ceEEEEccEEEEecCCcccccccCce-EEEecCCC-CCCCCceEEEECCEEccC
Confidence 544 233 456888888764 1 12 12111111 123345789999999763
No 36
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=97.78 E-value=0.00027 Score=68.57 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=40.1
Q ss_pred CCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEE-eC-CcccCCCccccceEEEecceEEc
Q 015319 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFL-VG-PMSFSGPYCQANIIFQLDGTIIA 178 (409)
Q Consensus 106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~-~~-~i~l~g~~~~s~~~l~l~Gtl~~ 178 (409)
...++++.||-. .|--++|..|+.+ +.+|++|+|-+-. +. .+.+ ....+|.+.|.|+.
T Consensus 31 ~~~~vni~dy~~-----~dwiasfkqaf~e-----~qtvvvpagl~cenint~ifi-----p~gktl~v~g~l~g 90 (464)
T PRK10123 31 ARQSVNINDYNP-----HDWIASFKQAFSE-----GQTVVVPAGLVCDNINTGIFI-----PPGKTLHILGSLRG 90 (464)
T ss_pred CCceeehhhcCc-----ccHHHHHHHHhcc-----CcEEEecCccEecccccceEe-----CCCCeEEEEEEeec
Confidence 456899999975 5778889998865 7899999993221 22 2333 45677777776654
No 37
>PLN02682 pectinesterase family protein
Probab=97.64 E-value=0.017 Score=58.82 Aligned_cols=112 Identities=7% Similarity=0.001 Sum_probs=71.5
Q ss_pred eEEEEeeeeEEEeceEEecCCCC---------eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC---------HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG 333 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~---------~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g 333 (409)
+-....++++..+||+|+|+... .+- ....+...+.+|+|.. ..|=+.... ..-..+||+|...
T Consensus 156 AT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G-----~QDTLy~~~-gRqyf~~C~IeG~ 229 (369)
T PLN02682 156 ATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLG-----AQDTLYDHL-GRHYFKDCYIEGS 229 (369)
T ss_pred eEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEec-----cccceEECC-CCEEEEeeEEccc
Confidence 44556778999999999997421 222 2458889999999998 455554432 3568889999865
Q ss_pred CCeEEeCCCceeEEEEEEEEcC---CCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 334 DDCVSIQTGCSNVYVHNVNCGP---GHGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 334 DD~Iai~sg~~nV~I~n~~~~~---g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
=|=| ++. -...+++|++.. ..| .|-..++. ....-.-..|.||++.+.
T Consensus 230 VDFI-FG~--g~a~Fe~C~I~s~~~~~G-~ITA~~r~-~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 230 VDFI-FGN--GLSLYEGCHLHAIARNFG-ALTAQKRQ-SVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred ccEE-ecC--ceEEEEccEEEEecCCCe-EEecCCCC-CCCCCceEEEEeeEecCC
Confidence 4544 233 577899998874 223 22222211 112235788999999864
No 38
>PLN02480 Probable pectinesterase
Probab=97.62 E-value=0.0031 Score=63.58 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEec
Q 015319 124 DDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD 173 (409)
Q Consensus 124 DdT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~ 173 (409)
.|-.-||+||++|.... --+|+|.+| +|. ..+.+.. -+.+++|+.+
T Consensus 58 g~f~TIQ~AIdaap~~~~~~~~I~Ik~G-vY~-E~V~I~~--~kp~ItL~G~ 105 (343)
T PLN02480 58 GDFTSVQSAIDAVPVGNSEWIIVHLRKG-VYR-EKVHIPE--NKPFIFMRGN 105 (343)
T ss_pred CCcccHHHHHhhCccCCCceEEEEEcCc-EEE-EEEEECC--CCceEEEEec
Confidence 47889999999876532 125889999 775 3444421 0344555444
No 39
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.58 E-value=0.035 Score=57.32 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=70.7
Q ss_pred eeEEEEeeeeEEEeceEEecCCCC--------eEE-eecCccEEEEeEEEeCCCCCCCCCceeec-----------Cccc
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQC--------HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-----------NSKD 322 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~--------~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-----------~s~n 322 (409)
.+..+..++++++++|+|+|+-.. .+- ....+.+.+.+|+|... .|=+... ....
T Consensus 198 SATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~-----QDTLy~~~~~~~~~~~~~~~gR 272 (422)
T PRK10531 198 SAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGR-----QDTFFVTNSGVQNRLETDRQPR 272 (422)
T ss_pred eEEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecc-----cceeeecccccccccccccccc
Confidence 355667899999999999998531 222 34688899999999984 3333331 1235
Q ss_pred EEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC-CC----eeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 323 VLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP-GH----GISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 323 V~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~-g~----GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
-..++|+|...=|=| ++. -..+|+||++.. .. .-.|--... ....-.-..|.||+|...
T Consensus 273 qYf~~CyIeG~VDFI-FG~--g~AvFenC~I~s~~~~~~~~g~ITA~~t--~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 273 TYVKNSYIEGDVDFV-FGR--GAVVFDNTEFRVVNSRTQQEAYVFAPAT--LPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EEEEeCEEeecccEE-ccC--ceEEEEcCEEEEecCCCCCceEEEecCC--CCCCCCEEEEECCEEecC
Confidence 788899988654544 233 467788887765 11 111211111 112234678888888864
No 40
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.56 E-value=0.0038 Score=65.42 Aligned_cols=130 Identities=17% Similarity=0.085 Sum_probs=74.2
Q ss_pred eEEEeceEEecCCCCe-EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC-----cee
Q 015319 272 NVTVTGITIQNSPQCH-LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG-----CSN 345 (409)
Q Consensus 272 nv~I~gvti~ns~~~~-i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg-----~~n 345 (409)
+..|++.++.-+-+|. =-+.-|++-+|+||.+.. |+|+|.+.. .++.|++|++.....+=.++-| .+|
T Consensus 357 ~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~-----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isn 430 (582)
T PF03718_consen 357 SMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV-----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISN 430 (582)
T ss_dssp EEEEEEEEEE---CTT----B--TT-EEEEEEEEE-----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEE
T ss_pred cceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-----cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCc
Confidence 5788999998765543 224456889999999999 899998875 6999999999875433223333 678
Q ss_pred EEEEEEEEcC----------CCeeEEEecCC----CC----CCCcEEEEEEEeEEEeccc-ceEEEEeecCCCC-eEEEE
Q 015319 346 VYVHNVNCGP----------GHGISIGSLGK----DN----TKACVSNITVRDVMMHNTM-NGVRIKTWQVMIP-SGTQC 405 (409)
Q Consensus 346 V~I~n~~~~~----------g~GisIGs~g~----~~----~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~G~~g-~v~~~ 405 (409)
|.|+|+.+-. ..+|---+..- +. ....|++++|+|+++++.. .-+||+--+.... .++|+
T Consensus 431 v~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn~~nl~ikN~ 510 (582)
T PF03718_consen 431 VSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQNYDNLVIKNV 510 (582)
T ss_dssp EEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEEEEEEEEEEE
T ss_pred eEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCCCcceEEEEe
Confidence 8898886543 12332221110 11 1234789999999999854 5566666554432 35555
Q ss_pred Ee
Q 015319 406 YN 407 (409)
Q Consensus 406 ~~ 407 (409)
+.
T Consensus 511 ~~ 512 (582)
T PF03718_consen 511 HF 512 (582)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 41
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.46 E-value=0.0094 Score=63.83 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=48.5
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..+|++|+|...- .+-+ ...+.+.+.+|.|.. ..|=+..... .-..++|+|...=|=|
T Consensus 323 aT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G-----~QDTLy~~~~-rq~y~~C~I~GtVDFI- 395 (553)
T PLN02708 323 ATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLG-----NQDTLYAHSL-RQFYKSCRIQGNVDFI- 395 (553)
T ss_pred EEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeee-----ccccceeCCC-ceEEEeeEEeecCCEE-
Confidence 33445667888888888887532 2222 357788888888887 3444444332 3456777776543333
Q ss_pred eCCCceeEEEEEEEEc
Q 015319 339 IQTGCSNVYVHNVNCG 354 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~ 354 (409)
++. -.++|+||++.
T Consensus 396 FG~--a~avfq~c~i~ 409 (553)
T PLN02708 396 FGN--SAAVFQDCAIL 409 (553)
T ss_pred ecC--ceEEEEccEEE
Confidence 222 35566666654
No 42
>smart00656 Amb_all Amb_all domain.
Probab=97.45 E-value=0.005 Score=57.08 Aligned_cols=129 Identities=15% Similarity=0.102 Sum_probs=89.5
Q ss_pred eeEEEEeeeeEEEeceEEecCCC------CeEEeecCccEEEEeEEEeCCC----CCCCCCce-eec-CcccEEEEeeEE
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQ------CHLKFDNCIGVVVHDVSVSSPG----DSPNTDGI-HLQ-NSKDVLIHTSNL 330 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~------~~i~~~~~~nV~I~n~~I~s~~----~~~n~DGI-~l~-~s~nV~I~n~~i 330 (409)
..|.+..++||.|++++|++... .+|.+..+++|.|+.|++.... .....||. ++. .+.+|+|.+|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 35777789999999999998643 4688999999999999999841 11225664 443 578999999999
Q ss_pred eeCCCeEEeCCCce-------eEEEEEEEEcCC--CeeEEEecCCCCCCCcEEEEEEEeEEEeccc-ceEEEEeecCCCC
Q 015319 331 ACGDDCVSIQTGCS-------NVYVHNVNCGPG--HGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQVMIP 400 (409)
Q Consensus 331 ~~gDD~Iai~sg~~-------nV~I~n~~~~~g--~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~G~~g 400 (409)
....-+.-++.+.+ +|++.+|.+... +.=.+. .+ .+.+-|+++.+.. .++. .-.++.-
T Consensus 112 ~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~g---~~hv~NN~~~n~~~~~~~--~~~~~~v 179 (190)
T smart00656 112 HNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------FG---YVHVYNNYYTGWTSYAIG--GRMGATI 179 (190)
T ss_pred ecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------CC---EEEEEeeEEeCcccEeEe--cCCCcEE
Confidence 98777888887532 699999988762 222221 11 5778888887754 3333 3344444
Q ss_pred eEE
Q 015319 401 SGT 403 (409)
Q Consensus 401 ~v~ 403 (409)
.++
T Consensus 180 ~~E 182 (190)
T smart00656 180 LSE 182 (190)
T ss_pred EEE
Confidence 444
No 43
>PLN02773 pectinesterase
Probab=97.39 E-value=0.031 Score=55.85 Aligned_cols=43 Identities=9% Similarity=-0.078 Sum_probs=28.7
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eE-EeecCccEEEEeEEEeCC
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HL-KFDNCIGVVVHDVSVSSP 306 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i-~~~~~~nV~I~n~~I~s~ 306 (409)
+-.+..++++.+++|+|+|...- .+ .....+.+.+.+|+|...
T Consensus 95 aTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~ 142 (317)
T PLN02773 95 GTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGW 142 (317)
T ss_pred eEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecc
Confidence 33455678888899999887421 12 223567788888888873
No 44
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.35 E-value=0.011 Score=63.01 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=47.9
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-....++++..+|++|+|.... .+- ....+.+.+.+|.|.. ..|=+..... .-..++|+|...=|=|
T Consensus 312 aT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G-----~QDTLy~~~~-rqyy~~C~I~GtVDFI- 384 (537)
T PLN02506 312 ATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEG-----YQDTLYAHSL-RQFYRECEIYGTIDFI- 384 (537)
T ss_pred eEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeec-----ccccceecCC-ceEEEeeEEecccceE-
Confidence 34455778888889999887422 222 2357888888888887 3444433332 3466666666543322
Q ss_pred eCCCceeEEEEEEEEc
Q 015319 339 IQTGCSNVYVHNVNCG 354 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~ 354 (409)
++ .-..+|+||.+.
T Consensus 385 FG--~a~avfq~C~i~ 398 (537)
T PLN02506 385 FG--NGAAVLQNCKIY 398 (537)
T ss_pred cc--CceeEEeccEEE
Confidence 22 234566666655
No 45
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.35 E-value=0.0012 Score=63.38 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=49.5
Q ss_pred eeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeC-CCCCCCCCceeecCcccEEEEeeEEeeCC-----------CeE
Q 015319 270 SFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS-PGDSPNTDGIHLQNSKDVLIHTSNLACGD-----------DCV 337 (409)
Q Consensus 270 ~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s-~~~~~n~DGI~l~~s~nV~I~n~~i~~gD-----------D~I 337 (409)
++|++|++..|+.... |..|++++++|++|.. .... ..|++|+++|+.+ .|| |++
T Consensus 78 s~~i~m~d~~i~apK~----fR~~~~i~L~nv~~~~A~Et~--------W~c~~i~l~nv~~-~gdYf~m~s~ni~id~l 144 (277)
T PF12541_consen 78 SNNITMKDSVIQAPKM----FRECSNITLENVDIPDADETL--------WNCRGIKLKNVQA-NGDYFFMNSENIYIDNL 144 (277)
T ss_pred eCCEEEEeeeccCchH----hhcccCcEEEeeEeCCCcccC--------EEeCCeEEEeEEE-eceEeeeeccceEEece
Confidence 3444444444443321 3456666666666632 2222 2356666666666 332 112
Q ss_pred EeC-----CCceeEEEEEEEEcCCC------eeEEE-ec--CCCCCCCcEEEEEEEeEEEeccc
Q 015319 338 SIQ-----TGCSNVYVHNVNCGPGH------GISIG-SL--GKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 338 ai~-----sg~~nV~I~n~~~~~g~------GisIG-s~--g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
.+. .+++||.|+|+++.... -+.+. |. |.| -+=.-+||++.||++.++.
T Consensus 145 ~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~GEY-LgW~SkNltliNC~I~g~Q 207 (277)
T PF12541_consen 145 VLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVINGEY-LGWNSKNLTLINCTIEGTQ 207 (277)
T ss_pred EEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceEeeeE-EEEEcCCeEEEEeEEeccC
Confidence 111 24788888888766521 13321 00 000 0001357788888777653
No 46
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.33 E-value=0.013 Score=62.87 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+.. .-+|+|.+| +|.- .+.+.-. +.+++|+.+|
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E-~V~i~~~--k~~i~~~G~g 316 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKG-VYFE-NVRVEKK--KWNVVMVGDG 316 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-ceEE-EEEecCC--CCeEEEEecC
Confidence 5678999999887643 348999999 6742 2322111 3466666665
No 47
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.33 E-value=0.015 Score=62.08 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHhhcCC--cEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~gg--~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+... -+|+|.+| +|.- .+.+.- -+.+++|+.+|
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E-~V~i~~--~k~~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKG-TYKE-NVEIGK--KKKNLMLVGDG 294 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCc-eeeE-EEEecC--CCceEEEEecC
Confidence 67889999998877532 37999999 6742 222211 03466665554
No 48
>PLN02665 pectinesterase family protein
Probab=97.32 E-value=0.025 Score=57.51 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.... .-+|+|.+| +|.- .+.++- -+.+++|+.++
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~E-kV~Ip~--~kp~Itl~G~~ 126 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPG-EYNE-KITIDR--SKPFVTLYGSP 126 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCc-EEEE-EEEecC--CCCEEEEEecC
Confidence 5778999999877643 236889999 7752 333311 15677777664
No 49
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.30 E-value=0.03 Score=59.03 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 124 DDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 124 DdT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
-|-.-||+||+++.+.. .-+|+|.+| +|.- .+.+.. -+.+++|..+|
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~nItliGdg 255 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDE-IVRIGS--TKPNLTLIGDG 255 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-eeEE-EEEecC--CCccEEEEecC
Confidence 36778999999887643 347999999 7753 222210 14566666665
No 50
>PLN02432 putative pectinesterase
Probab=97.29 E-value=0.03 Score=55.33 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhhcCC--cEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~gg--~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++..... -+|+|.+| +|. ..|.++- -+.+++|+.++
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~-E~V~ip~--~k~~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYR-EKVVVPA--DKPFITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeE-EEEEEec--cCceEEEEEcC
Confidence 57889999998876432 47999999 773 2333311 14566665553
No 51
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.28 E-value=0.017 Score=62.37 Aligned_cols=81 Identities=9% Similarity=0.030 Sum_probs=47.4
Q ss_pred EEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEe
Q 015319 265 LRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSI 339 (409)
Q Consensus 265 i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai 339 (409)
-.....+++..+|++|+|.... .+-+ ...+...+.+|.|.. .+|=+..... .-..++|+|...=|=|.
T Consensus 356 t~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g-----~QDTLy~~~~-rq~y~~c~I~GtvDFIF- 428 (587)
T PLN02313 356 TVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFA-----YQDTLYVHSN-RQFFVKCHITGTVDFIF- 428 (587)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEec-----ccchhccCCC-cEEEEeeEEeeccceec-
Confidence 3344667888888888887432 2222 357778888888887 3444444332 33666676665434331
Q ss_pred CCCceeEEEEEEEEc
Q 015319 340 QTGCSNVYVHNVNCG 354 (409)
Q Consensus 340 ~sg~~nV~I~n~~~~ 354 (409)
|.-.++|+||++.
T Consensus 429 --G~a~avfq~c~i~ 441 (587)
T PLN02313 429 --GNAAAVLQDCDIN 441 (587)
T ss_pred --cceeEEEEccEEE
Confidence 2345566666655
No 52
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.26 E-value=0.0092 Score=55.24 Aligned_cols=116 Identities=23% Similarity=0.351 Sum_probs=77.2
Q ss_pred EEEeceEEecCC------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeE
Q 015319 273 VTVTGITIQNSP------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346 (409)
Q Consensus 273 v~I~gvti~ns~------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV 346 (409)
+.|++++|.... ..++.+..|+++.|+||++.. .+.+|+.+..+....+.+.... .++.+..+..++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 346666666443 234888889999999999988 4778888875555555444332 123344445777
Q ss_pred EEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEec-ccceEEEEeecCCCCeEEEEEe
Q 015319 347 YVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHN-TMNGVRIKTWQVMIPSGTQCYN 407 (409)
Q Consensus 347 ~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~-~~~Gi~Ikt~~G~~g~v~~~~~ 407 (409)
.+.||.+..+ .|+..+. ++++++||++.+ ...||.+..... -.++|+..
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~~--~~i~n~~i 217 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGSN--IIISNNTI 217 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECSE--EEEEEEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCeE--EEEEeEEE
Confidence 7888887774 4643333 699999999998 779998887543 45666554
No 53
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.25 E-value=0.018 Score=61.81 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHhhcC-----CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVE-----ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g-----g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+.. --+|+|.+| +|.- .|.++- -+.+++|+.+|
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G-~Y~E-~V~i~~--~k~~i~l~G~g 311 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAG-VYEE-YVSIPK--NKKYLMMIGDG 311 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCc-EEEE-EEEecC--CCceEEEEecC
Confidence 5778999999887641 247999999 7742 222211 14566666554
No 54
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.23 E-value=0.021 Score=61.10 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=43.2
Q ss_pred EEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319 266 RFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340 (409)
Q Consensus 266 ~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~ 340 (409)
.....+++..+||+|+|.... .+- ....+.+.+.+|.|... .|=+.... ..-..++|+|...=|=| ++
T Consensus 312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG 384 (541)
T PLN02416 312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGY-----QDTLYVHS-FRQFYRECDIYGTIDYI-FG 384 (541)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecc-----cchhccCC-CceEEEeeEEeecccee-ec
Confidence 334567888888888877432 122 23567788888888873 33333322 23455666665433322 11
Q ss_pred CCceeEEEEEEEEc
Q 015319 341 TGCSNVYVHNVNCG 354 (409)
Q Consensus 341 sg~~nV~I~n~~~~ 354 (409)
.-..+|+||++.
T Consensus 385 --~a~avfq~c~i~ 396 (541)
T PLN02416 385 --NAAVVFQACNIV 396 (541)
T ss_pred --cceEEEeccEEE
Confidence 234455555543
No 55
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.23 E-value=0.023 Score=60.72 Aligned_cols=43 Identities=9% Similarity=-0.056 Sum_probs=29.1
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCC
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSP 306 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~ 306 (409)
+-.....+++..++++|+|.... .+- -...+...+.+|.|...
T Consensus 306 aT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gy 353 (538)
T PLN03043 306 STFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGY 353 (538)
T ss_pred eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEecc
Confidence 33445668888899999887432 232 24577788888888873
No 56
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.22 E-value=0.028 Score=59.63 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHhhc---CCcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKV---EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~---gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++... ..-+|+|.+| +|.- .+.++. -+.+++|+.+|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~nItl~G~g 284 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAG-TYHE-NLNIPT--KQKNVMLVGDG 284 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCC-eeEE-EEecCC--CCceEEEEEcC
Confidence 578899999875432 2357999999 6752 233321 14577776665
No 57
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.022 Score=62.01 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHhhcC--CcEEEECCceEEE
Q 015319 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFL 153 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~ 153 (409)
|-.-||+||+++.+.. .-+|+|.+| +|.
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~ 290 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAG-IYK 290 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCC-ceE
Confidence 6788999999877643 347999999 774
No 58
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.19 E-value=0.031 Score=59.41 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+.. .-+|+|.+| +|. ..+.++- -+.+++|+.+|
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~--~k~~itl~G~g 276 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGG-EYF-ENVELPK--KKTMIMFIGDG 276 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCc-eEE-EEEEecC--CCceEEEEEcC
Confidence 5778999999887643 347999999 675 2333321 14566666665
No 59
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.19 E-value=0.029 Score=60.64 Aligned_cols=83 Identities=7% Similarity=-0.038 Sum_probs=48.2
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..++++|+|...- .+- ....+...+.+|.|.. ..|=+.... ..-..++|+|...=|=|
T Consensus 365 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI- 437 (596)
T PLN02745 365 ATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEG-----YQDTLYAQT-HRQFYRSCVITGTIDFI- 437 (596)
T ss_pred EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEee-----cccccccCC-CcEEEEeeEEEeeccEE-
Confidence 33444677888888888886421 222 2457888888888887 344443332 23566777776543422
Q ss_pred eCCCceeEEEEEEEEcC
Q 015319 339 IQTGCSNVYVHNVNCGP 355 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~~ 355 (409)
++. -..+|+||++..
T Consensus 438 FG~--a~avf~~C~i~~ 452 (596)
T PLN02745 438 FGD--AAAIFQNCLIFV 452 (596)
T ss_pred ecc--eeEEEEecEEEE
Confidence 222 455666666543
No 60
>PLN02197 pectinesterase
Probab=97.19 E-value=0.022 Score=61.36 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=47.4
Q ss_pred EEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319 266 RFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340 (409)
Q Consensus 266 ~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~ 340 (409)
.....+++..++++|+|.... .+-+ ...+...+.+|.|.. .+|=+..... .-..++|+|...=|=| ++
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G-----yQDTLy~~~~-Rqyy~~C~I~GtVDFI-FG 431 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDG-----YQDTLYVNNG-RQFYRNIVVSGTVDFI-FG 431 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEe-----cCcceEecCC-CEEEEeeEEEeccccc-cc
Confidence 444677888888888886432 2222 357888888888888 4455544432 3466777776543322 12
Q ss_pred CCceeEEEEEEEEc
Q 015319 341 TGCSNVYVHNVNCG 354 (409)
Q Consensus 341 sg~~nV~I~n~~~~ 354 (409)
. -..+|+||++.
T Consensus 432 ~--a~avfq~C~i~ 443 (588)
T PLN02197 432 K--SATVIQNSLIV 443 (588)
T ss_pred c--eeeeeecCEEE
Confidence 2 23566666554
No 61
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.17 E-value=0.0048 Score=57.64 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=63.8
Q ss_pred eEEEE-eeeeEEEeceEEec---------------CCCCeEEeecCccEEEEeEEEeCCCC---CCCCCc-eeec-Cccc
Q 015319 264 ALRFY-GSFNVTVTGITIQN---------------SPQCHLKFDNCIGVVVHDVSVSSPGD---SPNTDG-IHLQ-NSKD 322 (409)
Q Consensus 264 ~i~~~-~~~nv~I~gvti~n---------------s~~~~i~~~~~~nV~I~n~~I~s~~~---~~n~DG-I~l~-~s~n 322 (409)
.+.+. +++||.|++++|.+ .....+.+..+++|.|+.|++..... ....|| +++. .+.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~ 117 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDN 117 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEE
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCce
Confidence 34444 89999999999998 23455899999999999999998511 112555 5664 5789
Q ss_pred EEEEeeEEeeCCCeEEeCCC-------ceeEEEEEEEEcC
Q 015319 323 VLIHTSNLACGDDCVSIQTG-------CSNVYVHNVNCGP 355 (409)
Q Consensus 323 V~I~n~~i~~gDD~Iai~sg-------~~nV~I~n~~~~~ 355 (409)
|||.+|.|...+.+..++.. ..+|++.+|.+..
T Consensus 118 vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~ 157 (200)
T PF00544_consen 118 VTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFAN 157 (200)
T ss_dssp EEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEE
T ss_pred EEEEchhccccccccccCCCCCccccCCceEEEEeEEECc
Confidence 99999999876555555442 3689999888765
No 62
>PLN02497 probable pectinesterase
Probab=97.17 E-value=0.019 Score=57.58 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=68.2
Q ss_pred EeeeeEEEeceEEecCCCC-----------eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319 268 YGSFNVTVTGITIQNSPQC-----------HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD 335 (409)
Q Consensus 268 ~~~~nv~I~gvti~ns~~~-----------~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD 335 (409)
..+++++++|++|+|+-.. .+- ....+...+.+|.|.. ..|=+.... ..-..+||+|...=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G-----~QDTLy~~~-gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAG-----VQDTLWDSD-GRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEec-----cccceeeCC-CcEEEEeCEEEeccc
Confidence 4677899999999998431 222 2357888999999998 444444332 356888999987655
Q ss_pred eEEeCCCceeEEEEEEEEcC-C-------Ce-eEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 336 CVSIQTGCSNVYVHNVNCGP-G-------HG-ISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 336 ~Iai~sg~~nV~I~n~~~~~-g-------~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
=| ++. -...|+||++.. . .| |.-- ++. ....-.-..|.||++.+.
T Consensus 186 FI-FG~--g~a~Fe~C~I~s~~~~~~~~~~g~ITA~--~r~-~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 186 FI-FGS--GQSIYESCVIQVLGGQLEPGLAGFITAQ--GRT-NPYDANGFVFKNCLVYGT 239 (331)
T ss_pred EE-ccC--ceEEEEccEEEEecCcCCCCCceEEEec--CCC-CCCCCceEEEEccEEccC
Confidence 44 233 467889998874 1 13 2221 211 122345679999999874
No 63
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.15 E-value=0.038 Score=58.73 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 124 DDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 124 DdT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
-|-.-||+||+++.+.. .-+|+|.+| +|.- .+.++- -+.+++|+.+|
T Consensus 216 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~~i~l~G~g 264 (520)
T PLN02201 216 GNFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLE-NVEIKK--KKWNIMMVGDG 264 (520)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCc-eeEE-EEEecC--CCceEEEEecC
Confidence 36888999999887643 357999999 7742 233311 14566666664
No 64
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.13 E-value=0.015 Score=57.64 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=34.6
Q ss_pred EeeeeEEEeceEEecCCCC------eEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319 268 YGSFNVTVTGITIQNSPQC------HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD 335 (409)
Q Consensus 268 ~~~~nv~I~gvti~ns~~~------~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD 335 (409)
...+++++++|+|+|.... .+. ...+.+.+.+|.|.+ ..|-+.... .....+||+|...-|
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g-----~QDTL~~~~-~r~y~~~c~IeG~vD 150 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLG-----YQDTLYANG-GRQYFKNCYIEGNVD 150 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE------STT-EEE-S-SEEEEES-EEEESEE
T ss_pred ccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcc-----ccceeeecc-ceeEEEeeEEEecCc
Confidence 3567888888999886422 133 356788899999988 455554443 245666666665433
No 65
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.12 E-value=0.028 Score=60.02 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhhc----CCcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKV----EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~----gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++... +.-+|+|.+| +|.-. +.++ .-+.+++|+.+|
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~--~~k~~i~l~G~g 283 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQEN-INVR--LNNDDIMLVGDG 283 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCC-EeEEE-EEec--CCCCcEEEEEcC
Confidence 678899999987642 2357999999 67532 2221 115677777765
No 66
>PLN02176 putative pectinesterase
Probab=97.11 E-value=0.064 Score=54.11 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHhhcCC--cEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~gg--~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+... -+|+|.+| +|.- .|.++- -+.+++|+.+|
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~E-kV~Ip~--~k~~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNG-IYRE-KVTIPK--EKGYIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCc-EEEE-EEEECC--CCccEEEEEcC
Confidence 57889999998876432 36899999 7753 333321 15678887775
No 67
>PLN02314 pectinesterase
Probab=97.08 E-value=0.036 Score=59.85 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+.. .-+|+|.+| +|.- .+.+.- -+.|++|+.+|
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E-~V~i~~--~k~~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYVE-NVLLDK--SKWNVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCc-eEEE-EEEecC--CCceEEEEecC
Confidence 5677999999876643 247999999 7752 222211 14566666665
No 68
>PLN02916 pectinesterase family protein
Probab=96.98 E-value=0.059 Score=56.95 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhhc-----CCcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKV-----EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~-----gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+. ..-+|+|.+| +|.- .+.++. -+.+++|+.+|
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~~i~l~G~g 248 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAG-VYNE-KVEIDR--HMKNVMFVGDG 248 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCc-eeeE-EEEecC--CCceEEEEecC
Confidence 677899999988752 1247999999 7752 233211 14566666665
No 69
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.05 Score=58.78 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+.. .-+|+|.+| +|.-..+.+.- -+.+++|+.+|
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~--~k~ni~l~G~g 331 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGR--KKTNLMFIGDG 331 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECC--CCceEEEEecC
Confidence 5778999999887643 347899999 67543333321 15677777765
No 70
>PLN02671 pectinesterase
Probab=96.90 E-value=0.09 Score=53.38 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.... .-+|+|.+| +|.- .|.++. -+.+++|+.+|
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~E-kV~I~~--~k~~Itl~G~g 117 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPG-IYRE-KVLVPK--SKPYISFIGNE 117 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCc-eEEE-EEEECC--CCCeEEEEecC
Confidence 5778999999887643 347999999 7742 233311 14566665553
No 71
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.70 E-value=0.13 Score=55.41 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319 125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174 (409)
Q Consensus 125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G 174 (409)
|-.-||+||+++.+.. .-+|+|.+| +|.- .+.++. -+.+++|+.+|
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E-~V~i~~--~k~~i~l~G~g 317 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQG-VYNE-KVDVTK--KMTHVTFIGDG 317 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCc-eeEE-EEEecC--CCCcEEEEecC
Confidence 5777999999886643 347999999 7753 232311 14577777665
No 72
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.13 Score=51.28 Aligned_cols=125 Identities=13% Similarity=0.165 Sum_probs=78.8
Q ss_pred eeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCC---CCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCcee
Q 015319 269 GSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGD---SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSN 345 (409)
Q Consensus 269 ~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~---~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~n 345 (409)
.++.-.|+...+..+ .++|.+..+.++.|++.+|....+ ....+||++.+++.+.|..+.|.-+.|||...+. +.
T Consensus 105 ~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S-~~ 182 (408)
T COG3420 105 TATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTS-QH 182 (408)
T ss_pred CcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccc-cc
Confidence 445556666666544 568888999999999999987644 3578899999999999999999999999988763 33
Q ss_pred EEEEEEEEcCC---------CeeEE-EecCCCCCCC----cEEEEEEEeEEEecc-cceEEEEee
Q 015319 346 VYVHNVNCGPG---------HGISI-GSLGKDNTKA----CVSNITVRDVMMHNT-MNGVRIKTW 395 (409)
Q Consensus 346 V~I~n~~~~~g---------~GisI-Gs~g~~~~~~----~v~nI~v~n~~~~~~-~~Gi~Ikt~ 395 (409)
..|+++.+... ++-.+ ++...++..+ ..+++.|.|+.-.+. ..||-+..-
T Consensus 183 ~~~~gnr~~~~RygvHyM~t~~s~i~dn~s~~N~vG~ALMys~~l~V~~nrS~Gnrd~Gillnya 247 (408)
T COG3420 183 NVFKGNRFRDLRYGVHYMYTNDSRISDNSSRDNRVGYALMYSDRLKVSDNRSSGNRDHGILLNYA 247 (408)
T ss_pred ceecccchhheeeeEEEEeccCcEeecccccCCcceEEEEEeccEEEEcCcccCccccceeeeee
Confidence 33343333321 11111 0000011001 246777887777654 467666554
No 73
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.57 E-value=0.0024 Score=47.85 Aligned_cols=38 Identities=37% Similarity=0.416 Sum_probs=23.5
Q ss_pred ccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCc
Q 015319 117 AKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPM 157 (409)
Q Consensus 117 A~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i 157 (409)
|+|||++|||.||.+|+++.. .|..|-. .|.||.+..+
T Consensus 1 A~GDGvtdDt~A~~a~l~a~~--~g~~IDg-~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEASP--VGRKIDG-AGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS---TTS-EE--TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhccC--CCeEEec-CCceEEEeeC
Confidence 789999999999999997532 2455554 7779998876
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.34 E-value=0.42 Score=48.86 Aligned_cols=81 Identities=12% Similarity=0.029 Sum_probs=51.8
Q ss_pred eeeeEEEeceEEecCC-CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEE
Q 015319 269 GSFNVTVTGITIQNSP-QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVY 347 (409)
Q Consensus 269 ~~~nv~I~gvti~ns~-~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~ 347 (409)
+-.+|++.++.|.... .-++.+....++++++|.+.+- ....++. -....|++|.|...--||.- .+...+.
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g~cl~~--~~~~~VrGC~F~~C~~gi~~-~~~~~ls 191 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HGTCLES--WAGGEVRGCTFYGCWKGIVS-RGKSKLS 191 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cceeEEE--cCCcEEeeeEEEEEEEEeec-CCcceEE
Confidence 3456777777777666 5556777777788888877762 3333333 35677788877655455532 2356777
Q ss_pred EEEEEEcCC
Q 015319 348 VHNVNCGPG 356 (409)
Q Consensus 348 I~n~~~~~g 356 (409)
|++|+|+..
T Consensus 192 Vk~C~FekC 200 (386)
T PF01696_consen 192 VKKCVFEKC 200 (386)
T ss_pred eeheeeehe
Confidence 777777764
No 75
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=95.33 E-value=0.17 Score=46.36 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=60.9
Q ss_pred ccEEEEeEEEeCCCCCCCCCceeecC---------cccEEEEeeEEee-CC-C-----eEEeCCCceeEEEEEEEEcCCC
Q 015319 294 IGVVVHDVSVSSPGDSPNTDGIHLQN---------SKDVLIHTSNLAC-GD-D-----CVSIQTGCSNVYVHNVNCGPGH 357 (409)
Q Consensus 294 ~nV~I~n~~I~s~~~~~n~DGI~l~~---------s~nV~I~n~~i~~-gD-D-----~Iai~sg~~nV~I~n~~~~~g~ 357 (409)
++|+|.|.+|.. ...-||.|.+ .++|.|+++.|.. |- - +=.+.+|..|..|||++|.+..
T Consensus 2 ~dIEIYnN~I~~----T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 2 DDIEIYNNTIYN----TYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred CceEEecceeec----ccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccc
Confidence 356666666666 3566666642 3588898888753 21 1 1234456789999999999865
Q ss_pred eeEEEecCCC---CCCCcEEEEEEEeEEEecccceEEEEeecCCCCeE
Q 015319 358 GISIGSLGKD---NTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSG 402 (409)
Q Consensus 358 GisIGs~g~~---~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v 402 (409)
+.+|..+-.+ .-.+.---.+|||+.|.++... +.-+.|+|+.
T Consensus 78 ~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r---~~~~~GtGYg 122 (198)
T PF08480_consen 78 HAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR---KSSPAGTGYG 122 (198)
T ss_pred cceEEEEecccccCCCCCceEEEEEcceEeeeeec---ccCCCCceeE
Confidence 5444332111 0112234488888888887543 5555666653
No 76
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.46 E-value=0.045 Score=59.58 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=10.5
Q ss_pred eEEEeeccccCCCCCc
Q 015319 109 VFNVKDFGAKGNGVSD 124 (409)
Q Consensus 109 ~~~V~d~GA~gdg~tD 124 (409)
..-|..||.++--.-+
T Consensus 606 maPvlP~gLkpKK~~k 621 (1102)
T KOG1924|consen 606 MAPVLPFGLKPKKVYK 621 (1102)
T ss_pred ccccCCCCCCccccCC
Confidence 3457888888755443
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.06 E-value=0.087 Score=36.61 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=29.0
Q ss_pred EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEee
Q 015319 288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC 332 (409)
Q Consensus 288 i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~ 332 (409)
|.+..+.+.+|++.+|.. +.|||++..+++-+|+++++..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 556667777777777777 6668888777777777777653
No 78
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=93.69 E-value=1.7 Score=43.48 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=63.1
Q ss_pred eEEEEeeeeEEEeceEEecCCCCe---------EEeecCccEEEEeEEEeCCCCCCCCCceeecCc-----------ccE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQCH---------LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNS-----------KDV 323 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~~---------i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s-----------~nV 323 (409)
+-.|..-.++.+++++++|....+ ......+.+.++||.+.. +.|-+....+ -.-
T Consensus 182 at~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg-----~QdTlFv~~~~~~~~~~tn~~~R~ 256 (405)
T COG4677 182 ATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLG-----NQDTLFVGNSGVQNRLETNRQPRT 256 (405)
T ss_pred hhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEee-----ccceEEecCCCCccccccCcchhh
Confidence 334556677888888888875443 223467788889998887 3343333322 245
Q ss_pred EEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC------CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 324 LIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP------GHGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 324 ~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~------g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
+++||+|...-| +.+++ --++|++|++-. -.|+-.-... ..+.---.++-|+++.-..
T Consensus 257 yftNsyI~GdvD-fIfGs--gtaVFd~c~i~~~d~r~~~~gYIfApST---~~~~~YGflalNsrfna~g 320 (405)
T COG4677 257 YFTNSYIEGDVD-FIFGS--GTAVFDNCEIQVVDSRTQQEGYIFAPST---LSGIPYGFLALNSRFNASG 320 (405)
T ss_pred heecceecccce-EEecc--ceEEeccceEEEeccCCCcceeEeccCC---CCCCceeEEEEeeeeecCC
Confidence 678888875433 33343 345667776543 1232221111 1222346777888887543
No 79
>PLN02773 pectinesterase
Probab=92.63 E-value=1.4 Score=44.08 Aligned_cols=72 Identities=6% Similarity=0.162 Sum_probs=47.5
Q ss_pred eecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEe
Q 015319 290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGS 363 (409)
Q Consensus 290 ~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs 363 (409)
...++++.++|++|.+.........+.+. .+..+.+.||.|....|.+..+.+ ..+++||.+++.-.+=+|+
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~g--r~yf~~c~IeG~VDFIFG~ 170 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYG--KQYLRDCYIEGSVDFIFGN 170 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCC--CEEEEeeEEeecccEEeec
Confidence 44577899999999986322222333332 357899999999988888877653 4566666666655544443
No 80
>PLN02480 Probable pectinesterase
Probab=92.49 E-value=2.2 Score=43.18 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=57.9
Q ss_pred EEEeeeeEEEeceEEecCC---------CCeEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319 266 RFYGSFNVTVTGITIQNSP---------QCHLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD 335 (409)
Q Consensus 266 ~~~~~~nv~I~gvti~ns~---------~~~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD 335 (409)
....+++++++||+|+|+. ..++-+ ...+.+.+.||+|.. ..|=+.... ..-..+||+|...=|
T Consensus 127 vtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G-----~QDTLy~~~-gR~yf~~C~IeG~VD 200 (343)
T PLN02480 127 FTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYS-----THNTLFDYK-GRHYYHSCYIQGSID 200 (343)
T ss_pred EEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEec-----ccceeEeCC-CCEEEEeCEEEeeee
Confidence 3345567777777777762 122333 456677777777766 334333222 245666676665433
Q ss_pred eEEeCCCceeEEEEEEEEcCC-------CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 336 CVSIQTGCSNVYVHNVNCGPG-------HGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 336 ~Iai~sg~~nV~I~n~~~~~g-------~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
=| ++ .-..+|+||++..- .|. |-..++.. ..-.-..|.||++.+.
T Consensus 201 FI-FG--~g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r~~--~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 201 FI-FG--RGRSIFHNCEIFVIADRRVKIYGS-ITAHNRES--EDNSGFVFIKGKVYGI 252 (343)
T ss_pred EE-cc--ceeEEEEccEEEEecCCCCCCceE-EEcCCCCC--CCCCEEEEECCEEccc
Confidence 22 22 24667888877641 131 22222111 2234678888888763
No 81
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=92.13 E-value=1.2 Score=44.67 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=78.2
Q ss_pred ceeEEEEeeeeEEEeceEEecCC-------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC
Q 015319 262 PTALRFYGSFNVTVTGITIQNSP-------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD 334 (409)
Q Consensus 262 p~~i~~~~~~nv~I~gvti~ns~-------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD 334 (409)
-..|.+.++.++.|++.+|+--. .-+|.+.+++++.|.+.+|.- ..|||..+.|++-.++++.++...
T Consensus 120 ~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy-----~rDgIy~~~S~~~~~~gnr~~~~R 194 (408)
T COG3420 120 SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISY-----GRDGIYSDTSQHNVFKGNRFRDLR 194 (408)
T ss_pred ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCcccc-----ccceEEEcccccceecccchhhee
Confidence 35788899999999999997432 446999999999999888877 789999998888888888776432
Q ss_pred CeEEe--------------CC--C-----ceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEecccce
Q 015319 335 DCVSI--------------QT--G-----CSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNG 389 (409)
Q Consensus 335 D~Iai--------------~s--g-----~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~G 389 (409)
-++.. .. | +++++|.|+.-.+ .|||-+-- +..-.|.++.+.+...|
T Consensus 195 ygvHyM~t~~s~i~dn~s~~N~vG~ALMys~~l~V~~nrS~Gnrd~Gillny---------a~~s~i~~N~v~g~~~G 263 (408)
T COG3420 195 YGVHYMYTNDSRISDNSSRDNRVGYALMYSDRLKVSDNRSSGNRDHGILLNY---------ANYSRIVGNRVAGNVSG 263 (408)
T ss_pred eeEEEEeccCcEeecccccCCcceEEEEEeccEEEEcCcccCccccceeeee---------eeccceeccEEEecccc
Confidence 22211 00 1 5778888877665 46655432 33444445545544455
No 82
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.72 E-value=3.4 Score=42.97 Aligned_cols=128 Identities=15% Similarity=0.186 Sum_probs=55.7
Q ss_pred EEEEeeeeEEEeceEEecCC--C-----CeEEe--ecCccEEEEeEEEeCCCCC-CCCCceee----cCcccEEEEeeEE
Q 015319 265 LRFYGSFNVTVTGITIQNSP--Q-----CHLKF--DNCIGVVVHDVSVSSPGDS-PNTDGIHL----QNSKDVLIHTSNL 330 (409)
Q Consensus 265 i~~~~~~nv~I~gvti~ns~--~-----~~i~~--~~~~nV~I~n~~I~s~~~~-~n~DGI~l----~~s~nV~I~n~~i 330 (409)
|.+. .+.++|+|++|++.. . +.... ..|.+.++.+|.|..-... ...+..++ ...+|-+|++|.|
T Consensus 62 l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F 140 (425)
T PF14592_consen 62 LRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYF 140 (425)
T ss_dssp EEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EE
T ss_pred EEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEe
Confidence 4554 478999999998742 1 11212 2588899999999863211 12223333 2578999999999
Q ss_pred eeC---CCeEEeC---CC----ceeEEEEEEEEcC-----CC---eeEEEecCCCCCCCcEEEEEEEeEEEecccceEEE
Q 015319 331 ACG---DDCVSIQ---TG----CSNVYVHNVNCGP-----GH---GISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRI 392 (409)
Q Consensus 331 ~~g---DD~Iai~---sg----~~nV~I~n~~~~~-----g~---GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~I 392 (409)
... +--+.+. .+ ..+-.|++|.|.. +. .|.||.-. ..-.-++.+|+++.|++|..=.+|
T Consensus 141 ~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~cdGE~EI 217 (425)
T PF14592_consen 141 QGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFERCDGEVEI 217 (425)
T ss_dssp E---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST---T-B-----EEES-EEEEE-SSSEE
T ss_pred eccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc---ccccccceeeecchhhhcCCceeE
Confidence 763 2234444 11 3355688888873 22 28887532 222236778888888876544444
Q ss_pred Eeec
Q 015319 393 KTWQ 396 (409)
Q Consensus 393 kt~~ 396 (409)
-+..
T Consensus 218 ISvK 221 (425)
T PF14592_consen 218 ISVK 221 (425)
T ss_dssp EEEE
T ss_pred EEee
Confidence 4443
No 83
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.49 E-value=0.32 Score=33.72 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=32.3
Q ss_pred ceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC
Q 015319 314 GIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP 355 (409)
Q Consensus 314 GI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~ 355 (409)
||.+..+.+.+|+++.+....|+|.+... ++-+|+++++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~s-~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTDS-SNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEeC-CCCEeECCEEEc
Confidence 78888888999999999988889988874 566666666543
No 84
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=89.21 E-value=2.5 Score=42.05 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=40.0
Q ss_pred cCccEEEEeEEEeCCCCCC--CCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEE
Q 015319 292 NCIGVVVHDVSVSSPGDSP--NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG 362 (409)
Q Consensus 292 ~~~nV~I~n~~I~s~~~~~--n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIG 362 (409)
..+++.++|++|.+..... .+-.+.+ .+..+.+.+|.|....|.+....+ ..+++||.+++.-.+=+|
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~~--r~y~~~c~IeG~vDFIfG 154 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANGG--RQYFKNCYIEGNVDFIFG 154 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-SS--EEEEES-EEEESEEEEEE
T ss_pred cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeeccc--eeEEEeeEEEecCcEEEC
Confidence 4568888999998753222 2233333 357899999999998888877664 566777777665444444
No 85
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=88.94 E-value=1.8 Score=45.19 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=15.6
Q ss_pred eeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeC
Q 015319 269 GSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS 305 (409)
Q Consensus 269 ~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s 305 (409)
.-.|++|+|..-.|+-.. +=.+++|.+|.|..
T Consensus 142 ~y~g~~ItN~~~~nt~~~-----GHpD~e~N~c~F~~ 173 (465)
T PF01690_consen 142 NYNGCTITNYKADNTWKY-----GHPDLELNGCHFND 173 (465)
T ss_pred cccCcEEecccccCcccC-----CCCCceecCccccc
Confidence 334556666655554222 22345555555544
No 86
>PLN02176 putative pectinesterase
Probab=88.59 E-value=9.9 Score=38.52 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=52.3
Q ss_pred eeeeEEEeceEEecCCC----------CeE-EeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeE
Q 015319 269 GSFNVTVTGITIQNSPQ----------CHL-KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV 337 (409)
Q Consensus 269 ~~~nv~I~gvti~ns~~----------~~i-~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I 337 (409)
.++++..++|+|+|.-. ..+ .....+...+.+|.|.. .+|=+.... ..-..++|+|...=|=|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G-----~QDTLy~~~-gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDG-----FQDTLFDGK-GRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEec-----ccceeEeCC-cCEEEEecEEEecccEE
Confidence 45666666666666521 111 12235666666666665 333333322 24556666666544433
Q ss_pred EeCCCceeEEEEEEEEcCC---------CeeEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319 338 SIQTGCSNVYVHNVNCGPG---------HGISIGSLGKDNTKACVSNITVRDVMMHN 385 (409)
Q Consensus 338 ai~sg~~nV~I~n~~~~~g---------~GisIGs~g~~~~~~~v~nI~v~n~~~~~ 385 (409)
. + .-...++||++..- .| .|-..++. ....-.-..|.||++.+
T Consensus 194 F-G--~a~a~Fe~C~I~s~~~~~~~~~~~g-~ITA~~r~-~~~~~~GfvF~~C~itg 245 (340)
T PLN02176 194 F-G--YAQSIFEGCTLKLTLGIYPPNEPYG-TITAQGRP-SPSDKGGFVFKDCTVTG 245 (340)
T ss_pred e-c--CceEEEeccEEEEecccCCCCCCcE-EEEeCCCC-CCCCCcEEEEECCEEcc
Confidence 2 2 24567777776531 12 11111111 11223467788888876
No 87
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=88.27 E-value=3.5 Score=44.45 Aligned_cols=73 Identities=8% Similarity=0.121 Sum_probs=54.5
Q ss_pred EeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEe
Q 015319 289 KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGS 363 (409)
Q Consensus 289 ~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs 363 (409)
.....+++..+|++|.+.........+.+. .+..+.+.||.|....|.+..+++ ..++++|.+.+.-.|=+|.
T Consensus 325 ~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~ 398 (553)
T PLN02708 325 VGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN 398 (553)
T ss_pred EEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC
Confidence 345678999999999986433334455553 467899999999999999888764 4589999999865555554
No 88
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.21 E-value=12 Score=34.55 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=74.0
Q ss_pred eeEEEeceEEecCCCCeEEeec---------CccEEEEeEEEeCCCC---CCCCCceeecCcccEEEEeeEEeeC-CCeE
Q 015319 271 FNVTVTGITIQNSPQCHLKFDN---------CIGVVVHDVSVSSPGD---SPNTDGIHLQNSKDVLIHTSNLACG-DDCV 337 (409)
Q Consensus 271 ~nv~I~gvti~ns~~~~i~~~~---------~~nV~I~n~~I~s~~~---~~n~DGI~l~~s~nV~I~n~~i~~g-DD~I 337 (409)
+++.|-+-+|.+...++|-+.. .++|.|++..|...+. .....||-..+-.|.+|+|++|+.- .-+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai 81 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI 81 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence 3567777777777777755543 3589999998886543 3466788888888999999999854 3445
Q ss_pred EeC--------CC-ceeEEEEEEEEcC---------CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceE
Q 015319 338 SIQ--------TG-CSNVYVHNVNCGP---------GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGV 390 (409)
Q Consensus 338 ai~--------sg-~~nV~I~n~~~~~---------g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi 390 (409)
+-. .| -.-.+|||+++.. +.|..|-..- ..-..+.++|+-+.+...|=
T Consensus 82 ~~~y~~~~~sp~gsgyttivRNNII~NT~~r~~~~~GtGYgv~N~L-----~~tHsFvLenNclYnN~aGn 147 (198)
T PF08480_consen 82 AQMYPDYDLSPKGSGYTTIVRNNIIVNTRKRKSSPAGTGYGVINYL-----PETHSFVLENNCLYNNAAGN 147 (198)
T ss_pred EEEecccccCCCCCceEEEEEcceEeeeeecccCCCCceeEEEecC-----CCcceEEEEccceeccCcCc
Confidence 442 11 1335567766543 3455554321 12357778888888765553
No 89
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=87.18 E-value=4.3 Score=43.89 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=67.1
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..++++|+|.... .+- -...+...+.+|.|.. .+|=+..... .-..++|+|...=|=|
T Consensus 333 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI- 405 (566)
T PLN02713 333 ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA-----YQDTLYTHSL-RQFYRECDIYGTVDFI- 405 (566)
T ss_pred eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc-----CCcceEECCC-CEEEEeeEEeccccee-
Confidence 44445668888888888886421 222 2457778888888887 4555555433 4577888887544433
Q ss_pred eCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 339 IQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
+ |.-.++|+||++..- ..-.|--.|+. ....-.-+.|.||+|...
T Consensus 406 F--G~a~avfq~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 406 F--GNAAVVFQNCNLYPRLPMQGQFNTITAQGRT-DPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred c--ccceEEEeccEEEEecCCCCCcceeeecCCC-CCCCCCEEEEEcCEEecC
Confidence 2 235678888887541 11122222221 122235789999999864
No 90
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=87.14 E-value=4 Score=43.88 Aligned_cols=83 Identities=8% Similarity=0.122 Sum_probs=59.8
Q ss_pred eecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEecCCCC
Q 015319 290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDN 368 (409)
Q Consensus 290 ~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~~ 368 (409)
....+++..+|++|.+.........+.+. .+..+.+.+|.|....|.+..+.+ .-+++||.+++.-.+=+|..
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~GtVDFIFG~a---- 388 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYGTIDFIFGNG---- 388 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCC--ceEEEeeEEecccceEccCc----
Confidence 45678899999999986433334445553 468899999999999999887764 46999999998666655542
Q ss_pred CCCcEEEEEEEeEEEe
Q 015319 369 TKACVSNITVRDVMMH 384 (409)
Q Consensus 369 ~~~~v~nI~v~n~~~~ 384 (409)
..+|+||++.
T Consensus 389 ------~avfq~C~i~ 398 (537)
T PLN02506 389 ------AAVLQNCKIY 398 (537)
T ss_pred ------eeEEeccEEE
Confidence 4555555555
No 91
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=86.80 E-value=7.7 Score=37.54 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=71.8
Q ss_pred EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEee-CCCeEEeC-----CCceeEEEEEEEEcC-CCeeE
Q 015319 288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC-GDDCVSIQ-----TGCSNVYVHNVNCGP-GHGIS 360 (409)
Q Consensus 288 i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~-gDD~Iai~-----sg~~nV~I~n~~~~~-g~Gis 360 (409)
+.+....+.+|++++|.++. ....-||+++++ +.+|+||+|.. ..++|.+. ....+++|.++.|.. ..||+
T Consensus 91 ~tI~~~~~~~i~GvtItN~n-~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~ 168 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPN-IARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGIS 168 (246)
T ss_pred EEEEecCCCEEEEEEEEcCC-CCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeE
Confidence 45556778899999999962 125668999877 99999999876 46777653 346778888888886 57888
Q ss_pred EEecCCCCCCCcEEEEEEEeEEEecccceEEEEee
Q 015319 361 IGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW 395 (409)
Q Consensus 361 IGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~ 395 (409)
|-.. ... +.| .++|+.|++...||.+...
T Consensus 169 i~~~----~~~-~~n-~I~NN~I~~N~~Gi~~~~~ 197 (246)
T PF07602_consen 169 ISDN----AAP-VEN-KIENNIIENNNIGIVAIGD 197 (246)
T ss_pred EEcc----cCC-ccc-eeeccEEEeCCcCeEeecc
Confidence 8643 222 333 5588888877778776643
No 92
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=86.13 E-value=5.9 Score=42.41 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=68.1
Q ss_pred eeEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeE
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV 337 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I 337 (409)
.+-.....+++..+|++|+|.... .+- ....+...+.+|+|.. ..|=+..... .-..++|+|...=|=|
T Consensus 305 SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~G-----yQDTLy~~~~-Rqyy~~C~I~GtVDFI 378 (529)
T PLN02170 305 TATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEG-----YQDSLYTHSK-RQFYRETDITGTVDFI 378 (529)
T ss_pred ceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEec-----cCCcceeCCC-CEEEEeeEEcccccee
Confidence 345556778888888888887422 222 2357778888888887 4555554433 3466888887654433
Q ss_pred EeCCCceeEEEEEEEEcCC----CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 338 SIQTGCSNVYVHNVNCGPG----HGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 338 ai~sg~~nV~I~n~~~~~g----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
++ .-..+++||++..- ..-.|--.++. ....-.-+.|.||++.+.
T Consensus 379 -FG--~a~avFq~C~I~~~~~~~~~g~ITAq~R~-~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 379 -FG--NSAVVFQSCNIAARKPSGDRNYVTAQGRS-DPNQNTGISIHNCRITAE 427 (529)
T ss_pred -cc--cceEEEeccEEEEecCCCCceEEEecCCC-CCCCCceEEEEeeEEecC
Confidence 22 34577888877641 11223222221 122235788999999874
No 93
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=85.87 E-value=4.5 Score=43.50 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=51.0
Q ss_pred ecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEE
Q 015319 291 DNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG 362 (409)
Q Consensus 291 ~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIG 362 (409)
...+++..+|++|.+.........+.+. .+..+.+.+|.|....|.+..+++ ..++++|.+++.-.+=+|
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG 384 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSF--RQFYRECDIYGTIDYIFG 384 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCC--ceEEEeeEEeeccceeec
Confidence 3467899999999986443344445552 467899999999999898887763 568999999885444333
No 94
>PLN02916 pectinesterase family protein
Probab=85.87 E-value=6 Score=42.13 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=74.2
Q ss_pred eeEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeE
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV 337 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I 337 (409)
.+-.....+++..++|+|.|.... .+-+ ...+...+.+|.|.. ..|=+..... .-..++|+|...=|=|
T Consensus 269 SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI 342 (502)
T PLN02916 269 SATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKG-----YQDTLFVHSL-RQFYRDCHIYGTIDFI 342 (502)
T ss_pred eEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec-----cCceeEeCCC-CEEEEecEEeccccee
Confidence 355556778999999999998432 2222 367888999999998 5565555443 4577899998654443
Q ss_pred EeCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 338 SIQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 338 ai~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
+ |.-..+|+||++..- ..-.|--.++. ....-.-+.|.||+|....
T Consensus 343 -F--G~a~avFq~C~I~~~~~~~~~~g~ITAq~r~-~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 343 -F--GDAAVVFQNCDIFVRRPMDHQGNMITAQGRD-DPHENTGISIQHSRVRASP 393 (502)
T ss_pred -c--cCceEEEecCEEEEecCCCCCcceEEecCCC-CCCCCcEEEEEeeEEecCc
Confidence 2 236778899987641 22233322221 1223458999999998753
No 95
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=85.70 E-value=5.2 Score=43.09 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=71.9
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..+|++|+|.... .+- -...+...+.+|.|.. ..|=+..... .-..+||+|...=|=|
T Consensus 316 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI- 388 (548)
T PLN02301 316 ATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDA-----YQDTLYAHSL-RQFYRDSYITGTVDFI- 388 (548)
T ss_pred EEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeee-----ccccceecCC-cEEEEeeEEEecccee-
Confidence 45556778899999999987532 222 2357888999999988 4555555443 3578888888654433
Q ss_pred eCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 339 IQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
+ |.-..+|+||++..- ..-.|--.|+. +...-.-+.|.||+|....
T Consensus 389 F--G~a~avfq~c~i~~~~~~~~~~~~iTAqgr~-~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 389 F--GNAAVVFQNCKIVARKPMAGQKNMVTAQGRT-DPNQNTGISIQKCDIIASS 439 (548)
T ss_pred c--ccceeEEeccEEEEecCCCCCCceEEecCCC-CCCCCCEEEEEeeEEecCc
Confidence 2 235678888887641 11223222321 2223458999999998753
No 96
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=85.58 E-value=5.7 Score=42.74 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=44.5
Q ss_pred eecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC
Q 015319 290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP 355 (409)
Q Consensus 290 ~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~ 355 (409)
....+++..+|++|.+.........+.+. .+....+.+|.|....|.+..+++ .-+++||.+++
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~G 373 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYG 373 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEee
Confidence 34457899999999986433344555553 457799999999988888877664 24566665555
No 97
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=85.54 E-value=7.2 Score=41.78 Aligned_cols=114 Identities=10% Similarity=0.062 Sum_probs=73.0
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..++++|.|...- .+-+ ...+...+.+|.|.. ..|=+.....+ -..++|+|...=|=|
T Consensus 286 AT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G-----~QDTLy~~~~R-qyy~~C~I~GtVDFI- 358 (520)
T PLN02201 286 ATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRG-----YQDTLYTHTMR-QFYRECRITGTVDFI- 358 (520)
T ss_pred EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeec-----cCCeeEeCCCC-EEEEeeEEeecccEE-
Confidence 44556788999999999998532 2222 457888999999998 56666655443 466889988654544
Q ss_pred eCCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 339 IQTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
++ .-..+|+||++.. +..-.|--.++. ....-.-+.|.||+|....
T Consensus 359 FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~Gfvf~~C~it~~~ 409 (520)
T PLN02201 359 FG--DATAVFQNCQILAKKGLPNQKNTITAQGRK-DPNQPTGFSIQFSNISADT 409 (520)
T ss_pred ec--CceEEEEccEEEEecCCCCCCceEEecCCC-CCCCCcEEEEEeeEEecCc
Confidence 23 3567899998875 111223222221 1223457899999998743
No 98
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=85.42 E-value=5.6 Score=43.05 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=60.9
Q ss_pred EEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319 266 RFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340 (409)
Q Consensus 266 ~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~ 340 (409)
.....+++..++++|+|.... .+- ....+...+.+|.|.. ..|=+..... .-..++|+|...=|=| +
T Consensus 340 ~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G-----~QDTLy~~~~-rq~y~~C~I~GtvDFI-F- 411 (565)
T PLN02468 340 FAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDA-----FQDTLYAHAQ-RQFYRECNIYGTVDFI-F- 411 (565)
T ss_pred eeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEe-----ccchhccCCC-ceEEEeeEEeccccee-e-
Confidence 333456666677777665322 111 2345666666666666 3333333322 3346666665433322 1
Q ss_pred CCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC
Q 015319 341 TGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV 397 (409)
Q Consensus 341 sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G 397 (409)
|.-.++|+||.+.. +..-.|--.|+. +...-.-+.|.||+|......-..+++=|
T Consensus 412 -G~a~avfq~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~yLG 471 (565)
T PLN02468 412 -GNSAVVFQNCNILPRRPMKGQQNTITAQGRT-DPNQNTGISIQNCTILPLGDLTSVKTFLG 471 (565)
T ss_pred -ccceEEEeccEEEEecCCCCCCceEEecCCC-CCCCCceEEEEccEEecCCCccccceeee
Confidence 23566777777653 111223222221 12233568889998886543223344433
No 99
>PLN02665 pectinesterase family protein
Probab=84.95 E-value=9.7 Score=38.98 Aligned_cols=115 Identities=13% Similarity=0.040 Sum_probs=73.5
Q ss_pred eeEEEEeeeeEEEeceEEecCCC---------CeEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEee
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQ---------CHLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC 332 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~---------~~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~ 332 (409)
.+-....++++..+||+|+|+.. ..+- ....+...+.||+|.. ..|=+.... -.-..+||+|..
T Consensus 146 SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G-----~QDTL~~~~-gr~yf~~CyIeG 219 (366)
T PLN02665 146 SATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIG-----FQDTLCDDK-GRHFFKDCYIEG 219 (366)
T ss_pred eEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecc-----ccceeEeCC-CCEEEEeeEEee
Confidence 35556688999999999999742 1222 2357889999999998 455554433 357788999987
Q ss_pred CCCeEEeCCCceeEEEEEEEEcC-CCe--eEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 333 GDDCVSIQTGCSNVYVHNVNCGP-GHG--ISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 333 gDD~Iai~sg~~nV~I~n~~~~~-g~G--isIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
.=|=|. +. -...+++|++.. ..| -.|--.++. ....-.-..|.||++.+..
T Consensus 220 ~VDFIF-G~--g~a~fe~C~i~s~~~~~~g~ITA~~r~-~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 220 TVDFIF-GS--GKSLYLNTELHVVGDGGLRVITAQARN-SEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred ccceec-cc--cceeeEccEEEEecCCCcEEEEcCCCC-CCCCCceEEEEeeEEecCC
Confidence 655542 33 466899998875 332 122222211 1122346789999998754
No 100
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=84.75 E-value=7.2 Score=41.85 Aligned_cols=114 Identities=10% Similarity=0.067 Sum_probs=73.7
Q ss_pred eeEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeE
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV 337 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I 337 (409)
.+-.....+++..++++|.|.... .+-+ ...+...+.+|.|.. ..|=+..... .-..++|+|...=|=|
T Consensus 297 SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G-----~QDTLy~~~~-Rqyy~~C~IeGtVDFI 370 (530)
T PLN02933 297 TATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDG-----YQDTLYVHSA-KQFYRECDIYGTIDFI 370 (530)
T ss_pred ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEe-----cccccccCCC-ceEEEeeEEeccccee
Confidence 344556788999999999998532 2333 458889999999998 4555555443 4588999998654433
Q ss_pred EeCCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 338 SIQTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 338 ai~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
++ .-..+|+||.+.. +....|--.++. ....-.-+.|.||++...
T Consensus 371 -FG--~a~avFq~C~i~~~~~~~~~~~~iTAq~r~-~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 371 -FG--NAAVVFQNCSLYARKPNPNHKIAFTAQSRN-QSDQPTGISIISSRILAA 420 (530)
T ss_pred -cc--CceEEEeccEEEEeccCCCCceEEEecCCC-CCCCCceEEEEeeEEecC
Confidence 23 3557888898764 122233333321 122335799999999874
No 101
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=84.73 E-value=7.5 Score=41.39 Aligned_cols=114 Identities=9% Similarity=0.054 Sum_probs=76.1
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..++++|+|...- .+-+ ...+...+.+|.|.. ..|=+.... ..-..++|+|...=|=|.
T Consensus 277 ATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~G-----yQDTLy~~~-~RqyyrdC~I~GtVDFIF 350 (509)
T PLN02488 277 ATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEG-----YQDALYPHR-DRQFYRECFITGTVDFIC 350 (509)
T ss_pred EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec-----cCcceeeCC-CCEEEEeeEEeeccceEe
Confidence 44555778999999999998532 2333 467889999999998 555555443 356889999987655542
Q ss_pred eCCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 339 IQTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
|.-.++|+||++.. +..-.|--.++. ....-.-+.|.||++....
T Consensus 351 ---G~a~avFq~C~I~sr~~~~~~~~~ITAq~R~-~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 351 ---GNAAAVFQFCQIVARQPMMGQSNVITAQSRE-SKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ---cceEEEEEccEEEEecCCCCCCEEEEeCCCC-CCCCCcEEEEEeeEEecCC
Confidence 34678899998874 122234333321 1222347999999999754
No 102
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=84.65 E-value=7.9 Score=33.88 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhcCCcEEEECC
Q 015319 126 TKAFEAAWAAACKVEASIMVVPA 148 (409)
Q Consensus 126 T~Aiq~Ai~~a~~~gg~~v~vP~ 148 (409)
..|-+++-..|.+.|+.-|+|-+
T Consensus 86 ~~Ar~~~r~kAa~~gaN~Vvl~~ 108 (133)
T PRK10781 86 PTARKRMQINASKMKANAVLLHS 108 (133)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEE
Confidence 35566666667777776666643
No 103
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=84.63 E-value=6.8 Score=42.67 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=51.5
Q ss_pred EeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEE
Q 015319 289 KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG 362 (409)
Q Consensus 289 ~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIG 362 (409)
.....+++..+|++|.+.........+.+. .+....+.||.|....|.+..+.+ .-+++||.+++.-.+=+|
T Consensus 367 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG 439 (596)
T PLN02745 367 FVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTH--RQFYRSCVITGTIDFIFG 439 (596)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCC--cEEEEeeEEEeeccEEec
Confidence 344678899999999986432233444443 467899999999998888877764 578999998885444443
No 104
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=84.34 E-value=38 Score=32.12 Aligned_cols=129 Identities=14% Similarity=0.079 Sum_probs=75.4
Q ss_pred eeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcc-cEEEEeeEEeeCCCeEEeCCCceeEEEE
Q 015319 271 FNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK-DVLIHTSNLACGDDCVSIQTGCSNVYVH 349 (409)
Q Consensus 271 ~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~-nV~I~n~~i~~gDD~Iai~sg~~nV~I~ 349 (409)
.+.+|+++.|=....-+||... +.+|+|+.... --.|.+.+.+.. .++|.+.-..+.+|=|.=..+.-.+.|+
T Consensus 61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~ 134 (215)
T PF03211_consen 61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIK 134 (215)
T ss_dssp TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEE
T ss_pred CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEE
Confidence 4567888888666566777776 67788887776 466777776655 7777777777666655445555667777
Q ss_pred EEEEcCCCeeEEEecCCCCCC-CcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEE
Q 015319 350 NVNCGPGHGISIGSLGKDNTK-ACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCY 406 (409)
Q Consensus 350 n~~~~~g~GisIGs~g~~~~~-~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~ 406 (409)
|..... .|--+-|.|.-... +.-|+|.+++........-+.|-...|-.-.++++.
T Consensus 135 nF~a~d-~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~ 191 (215)
T PF03211_consen 135 NFYAED-FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSC 191 (215)
T ss_dssp EEEEEE-EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEE
T ss_pred eEEEcC-CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEE
Confidence 754332 33222233211111 234566776666555555566777777766666554
No 105
>PLN02671 pectinesterase
Probab=84.32 E-value=12 Score=38.26 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=72.3
Q ss_pred eeEEEEeeeeEEEeceEEecCCC--------CeEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQ--------CHLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG 333 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~--------~~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g 333 (409)
.+-....++++..+||+|+|... ..+- ....+.+.+.+|+|.. ..|=+.... -.-..+||+|...
T Consensus 146 SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G-----~QDTLy~~~-gR~yf~~CyIeG~ 219 (359)
T PLN02671 146 TASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLG-----AQDTLLDET-GSHYFYQCYIQGS 219 (359)
T ss_pred eEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEec-----cccccEeCC-CcEEEEecEEEEe
Confidence 34455677899999999999831 1222 2357889999999998 455554433 3468899999876
Q ss_pred CCeEEeCCCceeEEEEEEEEcC---CCe-eEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 334 DDCVSIQTGCSNVYVHNVNCGP---GHG-ISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 334 DD~Iai~sg~~nV~I~n~~~~~---g~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
=|=|. +. -...|+||++.. ..| |.--+ +. ....-.-..|.||++.+.
T Consensus 220 VDFIF-G~--g~A~Fe~C~I~s~~~~~G~ITA~~--r~-~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 220 VDFIF-GN--AKSLYQDCVIQSTAKRSGAIAAHH--RD-SPTEDTGFSFVNCVINGT 270 (359)
T ss_pred ccEEe-cc--eeEEEeccEEEEecCCCeEEEeec--cC-CCCCCccEEEEccEEccC
Confidence 56553 33 468899998875 224 33322 11 112235689999999763
No 106
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=84.08 E-value=5 Score=44.15 Aligned_cols=114 Identities=8% Similarity=0.025 Sum_probs=72.1
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..+||+|+|...- .+- ....+...+.+|.|.. .+|=+.... ..-..++|+|...=|=|.
T Consensus 330 AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 330 ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDG-----YQDTLYAHS-HRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeee-----ccchhccCC-CcEEEEeCEEEEeccEEe
Confidence 44455678888999999887531 222 2457888889999887 455554443 345788888876544442
Q ss_pred eCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 339 IQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
|.-..+|+||++..- ..-.|--.|+. +...-.-+.|.||+|.+..
T Consensus 404 ---G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 404 ---GDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred ---cCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEecCc
Confidence 335678999988741 22333333322 1223457999999999753
No 107
>PLN02197 pectinesterase
Probab=84.01 E-value=7.2 Score=42.40 Aligned_cols=66 Identities=9% Similarity=0.190 Sum_probs=49.5
Q ss_pred ecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCe
Q 015319 291 DNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHG 358 (409)
Q Consensus 291 ~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~G 358 (409)
...+++..+|++|.+.........+.+. .+....+.+|.|....|.+...++ .-+++||.+++.-.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVD 427 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVD 427 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEeccc
Confidence 4567888999999986433344555553 468899999999999999988774 45899999987433
No 108
>PLN02314 pectinesterase
Probab=83.88 E-value=6.6 Score=42.70 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=55.8
Q ss_pred EEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319 266 RFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340 (409)
Q Consensus 266 ~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~ 340 (409)
.....+++..++++|+|.... .+- -...+...+.+|.|.. ..|=+..... .-..++|+|...=|=| +
T Consensus 360 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G-----~QDTLy~~~~-rq~y~~C~I~GtvDFI-F- 431 (586)
T PLN02314 360 FAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDA-----FQDTLYAHSN-RQFYRDCDITGTIDFI-F- 431 (586)
T ss_pred EEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEe-----ccchheeCCC-CEEEEeeEEEecccee-c-
Confidence 334556666666666665321 111 2345556666666666 3333333322 2455666665443322 1
Q ss_pred CCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 341 TGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 341 sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
|.-..+|+||.+..- ..-.|-..|+. +...-.-+.|.||+|.+..
T Consensus 432 -G~a~avf~~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 432 -GNAAVVFQNCNIQPRQPLPNQFNTITAQGKK-DPNQNTGISIQRCTISAFG 481 (586)
T ss_pred -cCceeeeeccEEEEecCCCCCCceEecCCCC-CCCCCCEEEEEeeEEecCC
Confidence 224566777766531 11123222221 1223457888999888753
No 109
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=83.70 E-value=6.4 Score=41.94 Aligned_cols=112 Identities=8% Similarity=-0.020 Sum_probs=74.0
Q ss_pred EEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319 266 RFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340 (409)
Q Consensus 266 ~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~ 340 (409)
.....+++..++|+|+|.... .+- ....+...+.+|.|.. ..|=+..... .-..++|+|...=|=|. +
T Consensus 265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G-----~QDTLy~~~~-rqyy~~C~I~G~vDFIF-G 337 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAG-----YQDTLYAAAL-RQFYRECDIYGTIDFIF-G 337 (497)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec-----ccchheeCCC-cEEEEeeEEEeccceEe-c
Confidence 445778999999999998543 222 2468899999999998 5565655544 35888999986555442 3
Q ss_pred CCceeEEEEEEEEcC---CCe--eEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 341 TGCSNVYVHNVNCGP---GHG--ISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 341 sg~~nV~I~n~~~~~---g~G--isIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
. -..+|+||++.. ..| -.|-..++. ....-.-+.|.||+|....
T Consensus 338 ~--a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 338 N--AAAVFQNCYLFLRRPHGKSYNVILANGRS-DPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred c--cceeecccEEEEecCCCCCceEEEecCCC-CCCCCceEEEEeeEEecCC
Confidence 3 557899998864 111 133333322 1223357999999999753
No 110
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=83.40 E-value=1.1 Score=46.74 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=3.7
Q ss_pred cEEEEeeEE
Q 015319 322 DVLIHTSNL 330 (409)
Q Consensus 322 nV~I~n~~i 330 (409)
++.|.+|.|
T Consensus 163 D~e~N~c~F 171 (465)
T PF01690_consen 163 DLELNGCHF 171 (465)
T ss_pred CceecCccc
Confidence 344444443
No 111
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=83.26 E-value=7.3 Score=42.37 Aligned_cols=71 Identities=7% Similarity=0.112 Sum_probs=51.4
Q ss_pred eecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEE
Q 015319 290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG 362 (409)
Q Consensus 290 ~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIG 362 (409)
....+++..+|++|.+.........+.+. .+....+.+|.|....|.+..+++ .-++++|.+.+.-.+=+|
T Consensus 358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceecc
Confidence 34567899999999986433334445553 467899999999999999888774 458999999885444333
No 112
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=82.93 E-value=7.8 Score=42.04 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=62.0
Q ss_pred EEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEe
Q 015319 265 LRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSI 339 (409)
Q Consensus 265 i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai 339 (409)
-.....+++..++++|+|.... .+-+ ...+...+.+|.|.. ..|=+..... .-..++|+|...=|=|.
T Consensus 341 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFIF- 413 (572)
T PLN02990 341 TVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDG-----YQDTLYVHSH-RQFFRDCTVSGTVDFIF- 413 (572)
T ss_pred EEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec-----ccchhccCCC-cEEEEeeEEecccceEc-
Confidence 3344566777777777776422 1222 346667777777776 3444443332 34557777765444332
Q ss_pred CCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319 340 QTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNTM 387 (409)
Q Consensus 340 ~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~ 387 (409)
|.-..+|+||++.. +..-.|--.++. +...-.-+.|.||+|.+..
T Consensus 414 --G~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 414 --GDAKVVLQNCNIVVRKPMKGQSCMITAQGRS-DVRESTGLVLQNCHITGEP 463 (572)
T ss_pred --cCceEEEEccEEEEecCCCCCceEEEeCCCC-CCCCCceEEEEeeEEecCc
Confidence 23457788887764 111233333321 1122347889999998754
No 113
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=82.86 E-value=6.7 Score=42.64 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=58.4
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..++|+|+|...- .+-+ ...+...+.+|.|.. ..|=+..... .-..++|+|...=|=|
T Consensus 353 aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI- 425 (587)
T PLN02484 353 ASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIG-----YQDTLYVHSN-RQFFRECDIYGTVDFI- 425 (587)
T ss_pred EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEec-----cCcccccCCC-cEEEEecEEEecccee-
Confidence 33444566666677777665321 1222 245666666676666 3343333322 3455666666443322
Q ss_pred eCCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 339 IQTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
-|.-..+|+||++.. +..-.|--.++. +...-.-+.|.||+|...
T Consensus 426 --FG~a~avfq~C~i~~~~~~~~~~~~ITAq~r~-~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 426 --FGNAAVVLQNCSIYARKPMAQQKNTITAQNRK-DPNQNTGISIHACRILAA 475 (587)
T ss_pred --cccceeEEeccEEEEecCCCCCceEEEecCCC-CCCCCcEEEEEeeEEecC
Confidence 123566777777764 111233222221 122345789999999864
No 114
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=82.84 E-value=10 Score=39.57 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=63.6
Q ss_pred EEeecCccEEEEeEEEeCCCC----CCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCC----------ceeEEEEEEE
Q 015319 288 LKFDNCIGVVVHDVSVSSPGD----SPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTG----------CSNVYVHNVN 352 (409)
Q Consensus 288 i~~~~~~nV~I~n~~I~s~~~----~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg----------~~nV~I~n~~ 352 (409)
......+++..+|++|.+... ..+...+.|. ....+.+.+|.|....|.+...+. ....+++||.
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 445678899999999998632 1122334442 467899999999988888877421 2368999999
Q ss_pred EcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 353 CGPGHGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 353 ~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
+++.-.+=+|.- ..+|+||+|+-.
T Consensus 280 IeG~VDFIFG~g----------~AvFenC~I~s~ 303 (422)
T PRK10531 280 IEGDVDFVFGRG----------AVVFDNTEFRVV 303 (422)
T ss_pred EeecccEEccCc----------eEEEEcCEEEEe
Confidence 999877777752 667888887753
No 115
>PRK09752 adhesin; Provisional
Probab=82.77 E-value=1.2 Score=51.23 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=5.0
Q ss_pred ceEEEecceE
Q 015319 167 NIIFQLDGTI 176 (409)
Q Consensus 167 ~~~l~l~Gtl 176 (409)
...+++.|.|
T Consensus 1010 ~y~vQLGGDl 1019 (1250)
T PRK09752 1010 TSTVQLSGDL 1019 (1250)
T ss_pred eEEEeeccch
Confidence 3445665544
No 116
>PLN02432 putative pectinesterase
Probab=82.69 E-value=15 Score=36.43 Aligned_cols=108 Identities=9% Similarity=0.003 Sum_probs=70.1
Q ss_pred EEEeeeeEEEeceEEecCCCC---eE-EeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCC
Q 015319 266 RFYGSFNVTVTGITIQNSPQC---HL-KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT 341 (409)
Q Consensus 266 ~~~~~~nv~I~gvti~ns~~~---~i-~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~s 341 (409)
....++++.++||+|+|.-.- .+ .....+...+.+|.|.. ..|=+.... -.-..+||+|...=|=|. +.
T Consensus 89 ~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G-----~QDTLy~~~-gr~yf~~c~I~G~VDFIF-G~ 161 (293)
T PLN02432 89 LSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILS-----YQDTLLDDT-GRHYYRNCYIEGATDFIC-GN 161 (293)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEec-----ccceeEECC-CCEEEEeCEEEecccEEe-cC
Confidence 345678999999999998421 22 22457889999999998 455554433 356888999987656553 33
Q ss_pred CceeEEEEEEEEcC---CCe-eEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319 342 GCSNVYVHNVNCGP---GHG-ISIGSLGKDNTKACVSNITVRDVMMHN 385 (409)
Q Consensus 342 g~~nV~I~n~~~~~---g~G-isIGs~g~~~~~~~v~nI~v~n~~~~~ 385 (409)
-...|++|++.. ..| |.-- ++. ....-.-..|.||++.+
T Consensus 162 --g~a~Fe~c~i~s~~~~~g~itA~--~r~-~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 162 --AASLFEKCHLHSLSPNNGAITAQ--QRT-SASENTGFTFLGCKLTG 204 (293)
T ss_pred --ceEEEEeeEEEEecCCCCeEEec--CCC-CCCCCceEEEEeeEEcc
Confidence 458899998874 234 3322 211 11222468999999985
No 117
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=81.98 E-value=6.2 Score=40.27 Aligned_cols=12 Identities=0% Similarity=0.066 Sum_probs=6.4
Q ss_pred CCceEEEeeccc
Q 015319 106 HSSVFNVKDFGA 117 (409)
Q Consensus 106 ~~~~~~V~d~GA 117 (409)
.++.--|..|++
T Consensus 109 ~~~~~pv~a~~~ 120 (376)
T PRK13855 109 RPEETPIFAYSS 120 (376)
T ss_pred ccccCceEEecc
Confidence 444455666743
No 118
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=81.95 E-value=3.8 Score=40.40 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=19.1
Q ss_pred eeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeC
Q 015319 270 SFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS 305 (409)
Q Consensus 270 ~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s 305 (409)
++|+++.+++=.|+.+ -+++.+-+.+.|+|++..+
T Consensus 245 vknfvvanitgs~crq-lvhvengkhfvirnvkakn 279 (464)
T PRK10123 245 VKNFVVANITGSDCRQ-LIHVENGKHFVIRNIKAKN 279 (464)
T ss_pred hhhEEEEeccCcChhh-eEEecCCcEEEEEeeeccc
Confidence 3455555555555422 3555666666666665543
No 119
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=81.87 E-value=24 Score=37.69 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=56.0
Q ss_pred eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC------CeE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD------DCV 337 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD------D~I 337 (409)
++++ ..+...+.++.|. .-+..+... ...--+++|.|... .|=| .+.-...++||.|..-. ..|
T Consensus 292 Al~v-~~D~~~fy~c~~~-G~QDTLy~~-~~rqyy~~C~I~G~-----vDFI--FG~a~avf~~C~i~~~~~~~~~~~~i 361 (497)
T PLN02698 292 ALSI-TSDHSVLYRCSIA-GYQDTLYAA-ALRQFYRECDIYGT-----IDFI--FGNAAAVFQNCYLFLRRPHGKSYNVI 361 (497)
T ss_pred EEEe-cCCcEEEEcceee-cccchheeC-CCcEEEEeeEEEec-----cceE--ecccceeecccEEEEecCCCCCceEE
Confidence 4443 3556666666665 223333332 23356777888763 2222 23345677777775421 134
Q ss_pred EeCC-----CceeEEEEEEEEcCCCee-EE-----EecCCCCCCCcEEEEEEEeEEEecccc
Q 015319 338 SIQT-----GCSNVYVHNVNCGPGHGI-SI-----GSLGKDNTKACVSNITVRDVMMHNTMN 388 (409)
Q Consensus 338 ai~s-----g~~nV~I~n~~~~~g~Gi-sI-----Gs~g~~~~~~~v~nI~v~n~~~~~~~~ 388 (409)
..+. ....+.|+||++.+...+ .. .-+|+ -...-..+.|.+++|.+.-.
T Consensus 362 TAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGR--PW~~ysr~vf~~s~l~~~I~ 421 (497)
T PLN02698 362 LANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGR--PWKKYSRAIVMESYIDDAIA 421 (497)
T ss_pred EecCCCCCCCCceEEEEeeEEecCCcccccccccceeccC--CCCCCceEEEEecccCCccc
Confidence 3322 134677888877763211 00 12332 12224567777777765433
No 120
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=81.86 E-value=8.5 Score=41.43 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=68.0
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia 338 (409)
+-.....+++..++++|+|.... .+- ....+...+.+|.|.. ..|=+..... .-..++|+|...=|=|
T Consensus 305 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI- 377 (539)
T PLN02995 305 ATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEG-----YQDTLMVHSQ-RQFYRECYIYGTVDFI- 377 (539)
T ss_pred EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEec-----ccchhccCCC-ceEEEeeEEeeccceE-
Confidence 44445677888888888887432 222 2357778888888888 4444444333 3477888887654433
Q ss_pred eCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 339 IQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 339 i~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
++ .-..+|+||++..- ..-.|--.|+. ....-.-+.|.||+|.+.
T Consensus 378 FG--~a~avf~~C~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 378 FG--NAAAVFQNCIILPRRPLKGQANVITAQGRA-DPFQNTGISIHNSRILPA 427 (539)
T ss_pred ec--ccceEEeccEEEEecCCCCCcceEecCCCC-CCCCCceEEEEeeEEecC
Confidence 22 25667888877641 11233223321 122335889999999974
No 121
>PHA01732 proline-rich protein
Probab=81.39 E-value=1.9 Score=34.60 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=5.0
Q ss_pred cHHHHHHHH
Q 015319 125 DTKAFEAAW 133 (409)
Q Consensus 125 dT~Aiq~Ai 133 (409)
|..+|.++-
T Consensus 43 ~apki~~~~ 51 (94)
T PHA01732 43 EAPKIREAQ 51 (94)
T ss_pred chhHHHHHH
Confidence 555665544
No 122
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=78.46 E-value=13 Score=35.26 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=37.4
Q ss_pred cEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEe-eCCCeEEeCCCceeEEEEEE
Q 015319 295 GVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLA-CGDDCVSIQTGCSNVYVHNV 351 (409)
Q Consensus 295 nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~-~gDD~Iai~sg~~nV~I~n~ 351 (409)
+.++.|+.|-. ...||||..+ +.+|+|.... -+.|+++++.....++|.+.
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~gg 113 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGG 113 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEEST
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCC
Confidence 67788888866 4789999987 7899999876 47999999986445555544
No 123
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=78.31 E-value=9.1 Score=39.32 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=59.0
Q ss_pred ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC-CCeEEeCCCceeEEEEEEEEcCC-CeeEEEecCCCC
Q 015319 291 DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG-DDCVSIQTGCSNVYVHNVNCGPG-HGISIGSLGKDN 368 (409)
Q Consensus 291 ~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g-DD~Iai~sg~~nV~I~n~~~~~g-~GisIGs~g~~~ 368 (409)
..-.+|++.|+.+...+ ...|+-+.+..++++++|.|.+- ..|+-... ...|++|+|.+. .|+.-.
T Consensus 118 ~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~~~------ 185 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIVSR------ 185 (386)
T ss_pred eeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEeecC------
Confidence 34457888899998842 46788888889999999998753 35554443 467899988764 244322
Q ss_pred CCCcEEEEEEEeEEEecccceE
Q 015319 369 TKACVSNITVRDVMMHNTMNGV 390 (409)
Q Consensus 369 ~~~~v~nI~v~n~~~~~~~~Gi 390 (409)
....+.|++|+|+.+.-||
T Consensus 186 ---~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 186 ---GKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred ---CcceEEeeheeeeheEEEE
Confidence 2356777777777776666
No 124
>PHA01732 proline-rich protein
Probab=77.13 E-value=2.8 Score=33.68 Aligned_cols=7 Identities=14% Similarity=0.525 Sum_probs=3.2
Q ss_pred EEEECCc
Q 015319 143 IMVVPAE 149 (409)
Q Consensus 143 ~v~vP~G 149 (409)
.+-||.-
T Consensus 66 sLrIpkq 72 (94)
T PHA01732 66 SLRIPKQ 72 (94)
T ss_pred eeEeecc
Confidence 3445543
No 125
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=75.95 E-value=2.6 Score=35.14 Aligned_cols=13 Identities=8% Similarity=0.386 Sum_probs=4.8
Q ss_pred HHHHHhhcceeee
Q 015319 16 AFLVWSASFETCN 28 (409)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (409)
+|+++.+.+-.|.
T Consensus 29 ~liill~c~c~~~ 41 (102)
T PF11669_consen 29 VLIILLSCCCACR 41 (102)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 126
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=73.87 E-value=38 Score=35.33 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=19.6
Q ss_pred eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEe
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHD 300 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n 300 (409)
..+.+..|.+|.|++-.-. +-+..+..|.++.+.+
T Consensus 147 stL~I~~~~gv~v~~~~g~---ma~ylf~~c~~~k~~~ 181 (549)
T PF09251_consen 147 STLRIRSCSGVEVENASGT---MAGYLFRGCHHCKVID 181 (549)
T ss_dssp EEEEEES-ECEEEES-EEE---EEEEEEES-ECEEEES
T ss_pred eEEEEeccCceEEEcCccc---eeeeeecccceEEEec
Confidence 4678888887777653321 2235666777766655
No 127
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=66.74 E-value=41 Score=28.08 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=11.7
Q ss_pred cCcccEEEEeeEEeeC----CCeEEeCCC
Q 015319 318 QNSKDVLIHTSNLACG----DDCVSIQTG 342 (409)
Q Consensus 318 ~~s~nV~I~n~~i~~g----DD~Iai~sg 342 (409)
....+.+|+++.+... ..+|.+...
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~ 101 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAG 101 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECC
Confidence 3344555555554443 444544443
No 128
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=66.15 E-value=5.8 Score=22.98 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=15.6
Q ss_pred EEEEEEeEEEecccc-eEEEEee
Q 015319 374 SNITVRDVMMHNTMN-GVRIKTW 395 (409)
Q Consensus 374 ~nI~v~n~~~~~~~~-Gi~Ikt~ 395 (409)
.+++|+||++++... ||.+...
T Consensus 2 ~~~~i~~n~i~~~~~~Gi~i~~~ 24 (26)
T smart00710 2 SNVTIENNTIRNNGGDGIYIGGX 24 (26)
T ss_pred CCEEEECCEEEeCCCCcEEEecc
Confidence 367788888887765 7777653
No 129
>PRK09752 adhesin; Provisional
Probab=63.47 E-value=3.1e+02 Score=32.51 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred eEEEEeeeeEEEeceEEecCCCC----eEEeecCc-----cEEEEeEEEeCCCCC-CCCCceeecCcccEEEEeeEEeeC
Q 015319 264 ALRFYGSFNVTVTGITIQNSPQC----HLKFDNCI-----GVVVHDVSVSSPGDS-PNTDGIHLQNSKDVLIHTSNLACG 333 (409)
Q Consensus 264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~~~~~-----nV~I~n~~I~s~~~~-~n~DGI~l~~s~nV~I~n~~i~~g 333 (409)
+|.-.....+.|.++.|.+.... .|...... .+.|.|+.|.+.... .+.-+|... ..++.|.+|.|.+.
T Consensus 114 AIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~-ng~vtIsnS~F~nN 192 (1250)
T PRK09752 114 AIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTI-NNDVYLSDVIFDNN 192 (1250)
T ss_pred EEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEc-cCcEEEEeeEEeCC
Confidence 44433444578888888866421 25544332 377888888774210 122224432 35688888888642
Q ss_pred ----------CCeEEeCC--C-------ceeEEEEEEEEcCC----CeeEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319 334 ----------DDCVSIQT--G-------CSNVYVHNVNCGPG----HGISIGSLGKDNTKACVSNITVRDVMMHN 385 (409)
Q Consensus 334 ----------DD~Iai~s--g-------~~nV~I~n~~~~~g----~GisIGs~g~~~~~~~v~nI~v~n~~~~~ 385 (409)
-++-+|.. . ..++.|.||.|... .|=+|... +.....+=|++++|++..+
T Consensus 193 ~A~~s~s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnNsA~~~GGAIY~~--s~t~p~~~n~~~d~~~~~~ 265 (1250)
T PRK09752 193 QAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTN--SATAPYLIDISVDDSYSQN 265 (1250)
T ss_pred cccccccccCCCceEEEeccCCCccccccceEEEeccEEEccccCCcceEEEec--CCCCceEEEEEeccccccC
Confidence 12333321 0 23567777777752 34333332 1244556677777776664
No 130
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=61.76 E-value=22 Score=36.99 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=10.0
Q ss_pred CccEEEEeEEEeCCCCCCCCCceeec
Q 015319 293 CIGVVVHDVSVSSPGDSPNTDGIHLQ 318 (409)
Q Consensus 293 ~~nV~I~n~~I~s~~~~~n~DGI~l~ 318 (409)
|-|+.++++.... +--|||++.
T Consensus 263 nYnLqF~d~~~i~----~~~DG~Dl~ 284 (549)
T PF09251_consen 263 NYNLQFRDSVTIS----PVWDGFDLG 284 (549)
T ss_dssp EBS-EEEEEEEES-----SSESEEE-
T ss_pred eeeEEEeccceEE----Eeecceecc
Confidence 4455555555554 245555553
No 131
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=55.05 E-value=42 Score=30.42 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=7.8
Q ss_pred ccHHHHHHHHHH
Q 015319 124 DDTKAFEAAWAA 135 (409)
Q Consensus 124 DdT~Aiq~Ai~~ 135 (409)
-|.+++|+++--
T Consensus 89 ~d~~~l~R~~~V 100 (163)
T PF06679_consen 89 PDSPMLKRALYV 100 (163)
T ss_pred CCccchhhhHHH
Confidence 366678887743
No 132
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=53.90 E-value=15 Score=38.11 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=14.1
Q ss_pred eEEEEeeeeEEEe------ceEEecCCCCe
Q 015319 264 ALRFYGSFNVTVT------GITIQNSPQCH 287 (409)
Q Consensus 264 ~i~~~~~~nv~I~------gvti~ns~~~~ 287 (409)
-++++.|.|.+|. .|++.|+....
T Consensus 355 svyIykC~~s~iqIkGKvNsItld~Ckk~s 384 (480)
T KOG2675|consen 355 SVYIYKCSNSTIQIKGKVNSITLDNCKKTS 384 (480)
T ss_pred eEEEEeccceEEEEeceeeeEEecCCceee
Confidence 5677777776653 35555555444
No 133
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=50.60 E-value=50 Score=27.55 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=44.9
Q ss_pred EeeeeEEEeceEEecCC---CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEe-eEEeeCCCeEE
Q 015319 268 YGSFNVTVTGITIQNSP---QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHT-SNLACGDDCVS 338 (409)
Q Consensus 268 ~~~~nv~I~gvti~ns~---~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n-~~i~~gDD~Ia 338 (409)
..+.+..+.+-.+.+.. .+++.+..+.+..+.+.++. . ... .+|+++....+..+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~-~~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-T-NND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-e-ecC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 55666677777766653 77888877766655555555 1 112 7899998888888777 55555566654
No 134
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=47.94 E-value=34 Score=34.46 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=56.0
Q ss_pred EeeeeEEEeceEEecCCCCeEEeecC-----------ccEEEEeEEEeCCCCCCCCCceeecCcc-cEEEEeeEEeeCCC
Q 015319 268 YGSFNVTVTGITIQNSPQCHLKFDNC-----------IGVVVHDVSVSSPGDSPNTDGIHLQNSK-DVLIHTSNLACGDD 335 (409)
Q Consensus 268 ~~~~nv~I~gvti~ns~~~~i~~~~~-----------~nV~I~n~~I~s~~~~~n~DGI~l~~s~-nV~I~n~~i~~gDD 335 (409)
...+-+.+++|.+.-. +..+....+ -.-.++||.|+.. +++...+ -++.++|.|..-|-
T Consensus 218 ~dgDka~frnv~llg~-QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gd--------vDfIfGsgtaVFd~c~i~~~d~ 288 (405)
T COG4677 218 TDGDKAIFRNVNLLGN-QDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGD--------VDFIFGSGTAVFDNCEIQVVDS 288 (405)
T ss_pred ecCCceeeeeeeEeec-cceEEecCCCCccccccCcchhhheecceeccc--------ceEEeccceEEeccceEEEecc
Confidence 3556677777777532 222222222 1345777887773 3443333 35558888765332
Q ss_pred -----e-EEeCC---C-ceeEEEEEEEEcC-CC-e-eEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 336 -----C-VSIQT---G-CSNVYVHNVNCGP-GH-G-ISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 336 -----~-Iai~s---g-~~nV~I~n~~~~~-g~-G-isIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
+ |.--+ + --...+-||++.. +. + +.+|-.= +.+....-.+.|+|+.|-.-
T Consensus 289 r~~~~gYIfApST~~~~~YGflalNsrfna~g~~~s~~LGRpw-d~~a~~nGQvVirds~m~eh 351 (405)
T COG4677 289 RTQQEGYIFAPSTLSGIPYGFLALNSRFNASGDAGSAQLGRPW-DVDANTNGQVVIRDSVMGEH 351 (405)
T ss_pred CCCcceeEeccCCCCCCceeEEEEeeeeecCCCCCeeeecCcc-ccccccCceEEEEecccccc
Confidence 1 11111 1 3456778888875 22 2 5554210 11222345688888888753
No 135
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=47.08 E-value=21 Score=37.16 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=5.8
Q ss_pred EEeecCccEEEE
Q 015319 288 LKFDNCIGVVVH 299 (409)
Q Consensus 288 i~~~~~~nV~I~ 299 (409)
+.+.+|++|.|+
T Consensus 394 ~eiinc~~v~iQ 405 (480)
T KOG2675|consen 394 VEIINCQDVQIQ 405 (480)
T ss_pred eEEeeccceeeE
Confidence 444455555443
No 136
>PRK13881 conjugal transfer protein TrbI; Provisional
Probab=46.33 E-value=61 Score=34.18 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 015319 126 TKAFEAAWA 134 (409)
Q Consensus 126 T~Aiq~Ai~ 134 (409)
++.|++|++
T Consensus 143 ~q~~~ea~k 151 (472)
T PRK13881 143 LQMFEEAVK 151 (472)
T ss_pred HHHHHHHHh
Confidence 344555554
No 137
>PF15621 PROL5-SMR: Proline-rich submaxillary gland androgen-regulated family
Probab=46.09 E-value=72 Score=27.17 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHhhcceeee
Q 015319 6 FRSLAFLFLIAFLVWSASFETCN 28 (409)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (409)
||.|+|+|-+.+|+-||.-..|+
T Consensus 1 MK~L~li~GLw~Li~CF~~~E~~ 23 (113)
T PF15621_consen 1 MKSLYLIFGLWALIGCFTPGESQ 23 (113)
T ss_pred CcceehHHHHHHHHHHccccccc
Confidence 78888888877777777755554
No 138
>PLN02682 pectinesterase family protein
Probab=45.93 E-value=2e+02 Score=29.64 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=67.7
Q ss_pred eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC---CeEEe
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD---DCVSI 339 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD---D~Iai 339 (409)
.++++ .++...+.++.|.-. +..+. ...-.--+++|.|... .|=| .+.-....++|.|..-. ..|..
T Consensus 189 VAL~v-~gDr~~fy~C~f~G~-QDTLy-~~~gRqyf~~C~IeG~-----VDFI--FG~g~a~Fe~C~I~s~~~~~G~ITA 258 (369)
T PLN02682 189 VALRI-SADTAAFYGCKFLGA-QDTLY-DHLGRHYFKDCYIEGS-----VDFI--FGNGLSLYEGCHLHAIARNFGALTA 258 (369)
T ss_pred EEEEe-cCCcEEEEcceEecc-ccceE-ECCCCEEEEeeEEccc-----ccEE--ecCceEEEEccEEEEecCCCeEEec
Confidence 34444 467788888888743 44443 3344578999999984 2221 23346788888887532 23444
Q ss_pred CCC-----ceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 340 QTG-----CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 340 ~sg-----~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
.+. .....|.||++.+..-+.+| + -...-..+.|.|++|.+-
T Consensus 259 ~~r~~~~~~~GfvF~~C~itg~g~~yLG---R--pW~~yarvVf~~t~m~~~ 305 (369)
T PLN02682 259 QKRQSVLEDTGFSFVNCKVTGSGALYLG---R--AWGTFSRVVFAYTYMDNI 305 (369)
T ss_pred CCCCCCCCCceEEEEeeEecCCCceEee---c--CCCCcceEEEEeccCCCc
Confidence 331 35788999999874335444 2 123357899999988864
No 139
>PLN02304 probable pectinesterase
Probab=45.17 E-value=51 Score=33.94 Aligned_cols=87 Identities=6% Similarity=0.071 Sum_probs=64.2
Q ss_pred EEeecCccEEEEeEEEeCCCC-----CCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEE
Q 015319 288 LKFDNCIGVVVHDVSVSSPGD-----SPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISI 361 (409)
Q Consensus 288 i~~~~~~nV~I~n~~I~s~~~-----~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisI 361 (409)
......+++..+|++|.+... ......+.+. .+..+.+.+|.|....|.+....+ .-+++||.+++.-.+=+
T Consensus 156 Tv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~g--R~Yf~~CyIeG~VDFIF 233 (379)
T PLN02304 156 SVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRG--RHYFKDCYIQGSIDFIF 233 (379)
T ss_pred EEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCCC--CEEEEeeEEcccccEEe
Confidence 344567899999999998631 1122344442 468899999999998888876653 57899999999888878
Q ss_pred EecCCCCCCCcEEEEEEEeEEEecc
Q 015319 362 GSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 362 Gs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
|.- ..+|+||++.-.
T Consensus 234 G~g----------~A~Fe~C~I~s~ 248 (379)
T PLN02304 234 GDA----------RSLYENCRLISM 248 (379)
T ss_pred ccc----------eEEEEccEEEEe
Confidence 763 678889888853
No 140
>PLN02634 probable pectinesterase
Probab=45.07 E-value=2.1e+02 Score=29.35 Aligned_cols=109 Identities=11% Similarity=0.059 Sum_probs=67.3
Q ss_pred eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC---CeEEe
Q 015319 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD---DCVSI 339 (409)
Q Consensus 263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD---D~Iai 339 (409)
.++++ ..+...+.++.|.- -+..+. ...-.--+++|.|... .|=| .+.-...+++|.|..-+ ..|..
T Consensus 175 VAl~v-~gDra~f~~C~f~G-~QDTL~-~~~gR~yf~~CyIeG~-----VDFI--FG~g~a~Fe~C~I~s~~~~~g~ITA 244 (359)
T PLN02634 175 VAFRI-SGDKAFFFGCGFYG-AQDTLC-DDAGRHYFKECYIEGS-----IDFI--FGNGRSMYKDCELHSIASRFGSIAA 244 (359)
T ss_pred EEEEe-cCCcEEEEEeEEec-ccceee-eCCCCEEEEeeEEccc-----ccEE--cCCceEEEeccEEEEecCCCcEEEe
Confidence 35554 46678888888873 344444 3344677999999984 2222 12345778889887632 34444
Q ss_pred CC-----CceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319 340 QT-----GCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNT 386 (409)
Q Consensus 340 ~s-----g~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~ 386 (409)
++ ......|.||++.+..-+.+| + -...-..+.|.+++|.+.
T Consensus 245 ~~R~~~~~~~GfvF~~C~vtg~g~~yLG---R--PW~~yarvVf~~t~l~~~ 291 (359)
T PLN02634 245 HGRTCPEEKTGFAFVGCRVTGTGPLYVG---R--AMGQYSRIVYAYTYFDAV 291 (359)
T ss_pred CCCCCCCCCcEEEEEcCEEcCCcceEec---C--CCCCcceEEEEecccCCE
Confidence 43 135689999999763224443 2 123356888988888764
No 141
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.34 E-value=6.6 Score=33.93 Aligned_cols=20 Identities=15% Similarity=0.266 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhcceeeee
Q 015319 10 AFLFLIAFLVWSASFETCNA 29 (409)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (409)
.|+++|+++++++.+..|.+
T Consensus 4 l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444544
No 142
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=36.85 E-value=44 Score=35.82 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=8.1
Q ss_pred eEEEeeccccCCC
Q 015319 109 VFNVKDFGAKGNG 121 (409)
Q Consensus 109 ~~~V~d~GA~gdg 121 (409)
++-+-.||-.-|.
T Consensus 333 vi~~p~fg~~ddd 345 (574)
T PF07462_consen 333 VIALPLFGNNDDD 345 (574)
T ss_pred eeeccCCCCCcCc
Confidence 4556667766655
No 143
>PF15050 SCIMP: SCIMP protein
Probab=35.12 E-value=36 Score=29.25 Aligned_cols=14 Identities=21% Similarity=0.714 Sum_probs=8.3
Q ss_pred eeeeccCCccccCC
Q 015319 26 TCNARRGRHWRHGR 39 (409)
Q Consensus 26 ~~~~~~~~~~~~~~ 39 (409)
++.-|.|+.|.-.+
T Consensus 32 R~~lRqGkkweiak 45 (133)
T PF15050_consen 32 RWQLRQGKKWEIAK 45 (133)
T ss_pred HHHHHccccceecc
Confidence 33446787776544
No 144
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.91 E-value=1.3e+02 Score=33.09 Aligned_cols=7 Identities=14% Similarity=0.795 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 015319 127 KAFEAAW 133 (409)
Q Consensus 127 ~Aiq~Ai 133 (409)
++|..+|
T Consensus 503 ~~l~~~w 509 (620)
T PRK14954 503 EKLRMEW 509 (620)
T ss_pred HHHHHHH
Confidence 3344444
No 145
>PF15471 TMEM171: Transmembrane protein family 171
Probab=30.55 E-value=1.9e+02 Score=28.48 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=9.4
Q ss_pred CCceEEEeecccc
Q 015319 106 HSSVFNVKDFGAK 118 (409)
Q Consensus 106 ~~~~~~V~d~GA~ 118 (409)
.+..+.+-.||+.
T Consensus 250 PPsY~SIFn~g~t 262 (319)
T PF15471_consen 250 PPSYYSIFNYGRT 262 (319)
T ss_pred CCCcchhccCCCc
Confidence 4456778889887
No 146
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=30.46 E-value=67 Score=33.73 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=7.7
Q ss_pred ccEEEEeeEEeeCCCeE
Q 015319 321 KDVLIHTSNLACGDDCV 337 (409)
Q Consensus 321 ~nV~I~n~~i~~gDD~I 337 (409)
+|=+|+.+.|++++.+|
T Consensus 427 sNP~i~~NkIWggqNGv 443 (625)
T KOG1777|consen 427 SNPKIRRNKIWGGQNGV 443 (625)
T ss_pred CCCeeeecceecCcccE
Confidence 34444444444444443
No 147
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=28.25 E-value=1.2e+02 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHHHHHhhcc
Q 015319 5 SFRSLAFLFLIAFLVWSASF 24 (409)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (409)
-||++.+|++.++|..|+.+
T Consensus 4 ~mk~~~~l~~~l~LS~~s~~ 23 (104)
T PRK14864 4 VMRRFASLLLTLLLSACSAL 23 (104)
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 36666655555555555443
No 148
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=28.18 E-value=1.9e+02 Score=25.71 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 015319 87 PLAPAVPTKPVYDVPPP 103 (409)
Q Consensus 87 ~~~p~~~~~~~~~p~~~ 103 (409)
+++|.+.+.....|||+
T Consensus 132 pYsp~~~~~~~~spPpp 148 (155)
T PF10873_consen 132 PYSPTPQQSAQRSPPPP 148 (155)
T ss_pred CCCCcccccccCCCccC
Confidence 34444433333333333
No 149
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.02 E-value=29 Score=28.58 Aligned_cols=6 Identities=33% Similarity=0.396 Sum_probs=2.5
Q ss_pred eeeecc
Q 015319 26 TCNARR 31 (409)
Q Consensus 26 ~~~~~~ 31 (409)
.+.||+
T Consensus 22 evaa~~ 27 (95)
T PF07172_consen 22 EVAARE 27 (95)
T ss_pred hhhhHH
Confidence 344443
No 150
>PF15240 Pro-rich: Proline-rich
Probab=27.11 E-value=38 Score=31.18 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhc
Q 015319 9 LAFLFLIAFLVWSAS 23 (409)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (409)
|.+||.+|||+|||.
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 556666777777775
No 151
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.48 E-value=1.9e+02 Score=31.45 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=9.8
Q ss_pred CccHHHHHHHHHHHhh
Q 015319 123 SDDTKAFEAAWAAACK 138 (409)
Q Consensus 123 tDdT~Aiq~Ai~~a~~ 138 (409)
.+-.+.|++.|....+
T Consensus 461 ~~~~~~~~~~w~~~~~ 476 (585)
T PRK14950 461 GDVLEQLEAIWKQILR 476 (585)
T ss_pred chhHHHHHHHHHHHHH
Confidence 3456667777766543
No 152
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=26.15 E-value=85 Score=32.43 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=12.4
Q ss_pred eeeeeccCCccccCCCC
Q 015319 25 ETCNARRGRHWRHGRSS 41 (409)
Q Consensus 25 ~~~~~~~~~~~~~~~~~ 41 (409)
.-|--|+|.+||+.+.+
T Consensus 306 Imc~rREG~~~rd~~ts 322 (386)
T PF05510_consen 306 IMCCRREGVKKRDSKTS 322 (386)
T ss_pred HheechHHhhcchhccC
Confidence 34445999999998743
No 153
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=25.98 E-value=2.9e+02 Score=28.46 Aligned_cols=7 Identities=29% Similarity=0.639 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 015319 15 IAFLVWS 21 (409)
Q Consensus 15 ~~~~~~~ 21 (409)
+++++|+
T Consensus 43 ~~~~~w~ 49 (376)
T PRK13855 43 SLSLIWL 49 (376)
T ss_pred HHHHHHh
Confidence 3334443
No 154
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=24.30 E-value=3.3e+02 Score=31.72 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhcceeeeec
Q 015319 12 LFLIAFLVWSASFETCNAR 30 (409)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (409)
+|||+.+++.-.+..|.+.
T Consensus 7 ~~~~~~~~~~~~~~~c~g~ 25 (1004)
T PTZ00462 7 LFFIICVIFIINVIKCRGE 25 (1004)
T ss_pred hHhhhhhhhcCceEEeccc
Confidence 4444455555667778754
No 155
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.34 E-value=1.3e+02 Score=23.14 Aligned_cols=10 Identities=40% Similarity=0.149 Sum_probs=5.5
Q ss_pred cHHHHHHHHH
Q 015319 125 DTKAFEAAWA 134 (409)
Q Consensus 125 dT~Aiq~Ai~ 134 (409)
-..||-+|+.
T Consensus 65 ~vAaI~AAi~ 74 (79)
T PF04277_consen 65 LVAAIAAAIA 74 (79)
T ss_pred HHHHHHHHHH
Confidence 3455666664
No 156
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=23.09 E-value=96 Score=33.12 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=15.2
Q ss_pred CCCCCccHHHHHHHHHHHhh
Q 015319 119 GNGVSDDTKAFEAAWAAACK 138 (409)
Q Consensus 119 gdg~tDdT~Aiq~Ai~~a~~ 138 (409)
=|+..-||+.|...++.-++
T Consensus 313 ~D~~~~D~~r~~~LFEsr~~ 332 (817)
T KOG1925|consen 313 LDPVSVDTARLEHLFESRAK 332 (817)
T ss_pred cCcceecHHHHHHHHHHhhh
Confidence 37888899999988876443
No 157
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=22.91 E-value=72 Score=33.90 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCceEEEeeccccCCCCCccHHHHHHHH
Q 015319 71 PKPKPKPKAPSHNKSPPLAPAVPTKPVYDV-----PPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAW 133 (409)
Q Consensus 71 ~~~~~~~~~~~~~~~p~~~p~~~~~~~~~p-----~~~~~~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai 133 (409)
+.+++++|.+.++..|+.+|+++++|++.| ||++......--..-||..=-..|...|+..||
T Consensus 408 p~~PpPPPPs~~g~~Pp~apPppPPPPPmPs~gagppPPP~~~~~Pp~~aga~aPp~p~~~~al~~~i 475 (569)
T KOG3671|consen 408 PVPPPPPPPSLPGSAPPSAPPPPPPPPPMPSTGAGPPPPPSAPIAPPQGAGAAAPPAPPARPALLDAI 475 (569)
T ss_pred CCCCCCCCCcccCCCCCCCCCCCCcCCCCCccCCCCCCCCCccCCCCCccCCCCCCCCCCcccccccc
No 158
>PLN02497 probable pectinesterase
Probab=22.82 E-value=8.1e+02 Score=24.82 Aligned_cols=86 Identities=9% Similarity=0.053 Sum_probs=62.9
Q ss_pred EEeecCccEEEEeEEEeCCCCCC-------CCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCee
Q 015319 288 LKFDNCIGVVVHDVSVSSPGDSP-------NTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGI 359 (409)
Q Consensus 288 i~~~~~~nV~I~n~~I~s~~~~~-------n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~Gi 359 (409)
-.....+++..+|++|.+..... ....+.+. ......+.||.|....|.+.... ..-+++||.+++.-.+
T Consensus 109 T~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDF 186 (331)
T PLN02497 109 TFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDF 186 (331)
T ss_pred EEEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccE
Confidence 34457789999999999864211 11233332 46789999999999888887655 3578999999998787
Q ss_pred EEEecCCCCCCCcEEEEEEEeEEEec
Q 015319 360 SIGSLGKDNTKACVSNITVRDVMMHN 385 (409)
Q Consensus 360 sIGs~g~~~~~~~v~nI~v~n~~~~~ 385 (409)
=+|.. ..+|+||+++-
T Consensus 187 IFG~g----------~a~Fe~C~I~s 202 (331)
T PLN02497 187 IFGSG----------QSIYESCVIQV 202 (331)
T ss_pred EccCc----------eEEEEccEEEE
Confidence 77752 67888888874
No 159
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=22.17 E-value=59 Score=32.23 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=20.2
Q ss_pred ccchhhHHHHHHHHHHHHhhcceeee
Q 015319 3 GLSFRSLAFLFLIAFLVWSASFETCN 28 (409)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (409)
.|.|.+..||++-|..|||-.-+.|.
T Consensus 2 aMmMTGRVLLVCALCVLWCg~gG~~~ 27 (291)
T PTZ00459 2 AMMMTGRVLLVCALCVLWCGAGGRCE 27 (291)
T ss_pred ccchhchHHHHHHHHHHhcCCCCCcC
Confidence 36778888988888889997556664
No 160
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=22.17 E-value=88 Score=25.69 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=19.4
Q ss_pred eeccccC-CCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEe
Q 015319 113 KDFGAKG-NGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLV 154 (409)
Q Consensus 113 ~d~GA~g-dg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~ 154 (409)
.|||..+ +.....-..|++||..--. ...+|+ .| +|..
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~-~~~tv~--~G-tYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIK-NPDTVE--KG-TYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH--TT-EE-----BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhC-CCCeEe--cc-ceec
Confidence 5899888 4444455778999976444 356654 88 7863
No 161
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=21.67 E-value=2.7e+02 Score=23.66 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCC
Q 015319 140 EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTG 181 (409)
Q Consensus 140 gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~ 181 (409)
.+..|+||+|.+.++..-. ..-..|.++|+|...++
T Consensus 11 ~g~~V~I~~g~~v~lD~~~------~~l~~l~I~G~L~f~~~ 46 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVST------PKLGSLIIGGTLIFDDD 46 (125)
T ss_pred CCCEEEECCCCEEEEcCCC------hheeEEEEEEEEEEccC
Confidence 3789999999666654321 11225556899988765
No 162
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=21.51 E-value=72 Score=34.63 Aligned_cols=9 Identities=56% Similarity=1.557 Sum_probs=7.5
Q ss_pred cCCccccCC
Q 015319 31 RGRHWRHGR 39 (409)
Q Consensus 31 ~~~~~~~~~ 39 (409)
+|+.|||.-
T Consensus 40 EG~nwRHGD 48 (606)
T PF07217_consen 40 EGKNWRHGD 48 (606)
T ss_pred cCcCccccc
Confidence 899999953
No 163
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=21.45 E-value=3.6e+02 Score=24.23 Aligned_cols=10 Identities=10% Similarity=-0.147 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 015319 13 FLIAFLVWSA 22 (409)
Q Consensus 13 ~~~~~~~~~~ 22 (409)
++|++++...
T Consensus 86 ~~Vi~Iv~~I 95 (179)
T PF13908_consen 86 CGVIAIVVLI 95 (179)
T ss_pred hHHHHHHHhH
Confidence 3344444333
No 164
>PRK09718 hypothetical protein; Validated
Probab=21.18 E-value=1.8e+02 Score=31.05 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=5.2
Q ss_pred eeEEEEEEEEc
Q 015319 344 SNVYVHNVNCG 354 (409)
Q Consensus 344 ~nV~I~n~~~~ 354 (409)
+++.+++|.+.
T Consensus 168 k~V~FsdCnL~ 178 (512)
T PRK09718 168 DTVDFSQSQLT 178 (512)
T ss_pred CCcEEeeeEec
Confidence 44445555443
No 165
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=21.04 E-value=1.1e+02 Score=34.17 Aligned_cols=23 Identities=4% Similarity=-0.132 Sum_probs=10.4
Q ss_pred ccccCCCCCcc-HHHHHHHHHHHh
Q 015319 115 FGAKGNGVSDD-TKAFEAAWAAAC 137 (409)
Q Consensus 115 ~GA~gdg~tDd-T~Aiq~Ai~~a~ 137 (409)
.|-..|-++.- .+-+++-++..|
T Consensus 722 pgp~ed~~~lP~ae~~~rfvdq~~ 745 (988)
T KOG0965|consen 722 PGPSEDIKTLPTAEKLARFVDQVG 745 (988)
T ss_pred CCcchhhhcCCchhHHHHHHhhcC
Confidence 44444433332 334555555544
No 166
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=20.67 E-value=93 Score=25.35 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=10.9
Q ss_pred CCccchhhHHHHHHHHHHH
Q 015319 1 MRGLSFRSLAFLFLIAFLV 19 (409)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (409)
|.++++.-|.++++|+||+
T Consensus 1 M~glG~~eLlIIlvIvLLl 19 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLL 19 (89)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 6667766555555555544
No 167
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.23 E-value=76 Score=30.45 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=30.6
Q ss_pred ceEEEeeccccCCCCCccH------------HHHHHHHHHHhhcCCcEEEE--CCceEE
Q 015319 108 SVFNVKDFGAKGNGVSDDT------------KAFEAAWAAACKVEASIMVV--PAESVF 152 (409)
Q Consensus 108 ~~~~V~d~GA~gdg~tDdT------------~Aiq~Ai~~a~~~gg~~v~v--P~G~~y 152 (409)
.++|++||..+--.+.||+ +.|-+||+++++.....|++ |.|..|
T Consensus 34 ~~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~~~~vi~lsP~G~~f 92 (240)
T COG0336 34 EVVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAKKAKVILLSPQGKPF 92 (240)
T ss_pred EeecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhccCCeEEEECCCCCcc
Confidence 4677788887665556665 56899999988764444444 788544
Done!