BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015320
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/373 (52%), Positives = 253/373 (67%), Gaps = 4/373 (1%)
Query: 35 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLK 94
E L++T L+DFH+A+GGKMV FAGWS+P+QY+DS +S L+ RQ+ SLFDVSHM +
Sbjct: 3 EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKIL 62
Query: 95 GKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRD 154
G D V +E LV+ D+A L P GTL++FTNE GG +DD ++T + H+Y+V NAGC +
Sbjct: 63 GSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWE 122
Query: 155 KDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI 214
KDLA ++ ++ +G DV + D +LLALQGP AA VLQ DDL KL F +
Sbjct: 123 KDLALMQDKVRELQNQGRDVGLEVLDN-ALLALQGPTAAQVLQAGVADDLRKLPFMTSAV 181
Query: 215 LDINGVS-CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLE 273
+++ GVS C +TR GYTGEDG EISVP AV LA AIL+ E V+L GL ARDSLRLE
Sbjct: 182 MEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPE--VKLAGLAARDSLRLE 239
Query: 274 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG 333
AGLCLYGND+++H TPVE L+W +GKRRRA F GA+ I+ QL RRVG G
Sbjct: 240 AGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEG 299
Query: 334 PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDG 393
P R+HS + + +G IG +TSG SP LKKN+AMGYV + GT + +EVR K
Sbjct: 300 APMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMA 359
Query: 394 NITKMPFVPTKYY 406
++KMPFVPT YY
Sbjct: 360 VVSKMPFVPTNYY 372
>pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System
Aminomethyltransferase T From Bartonella Henselae
Length = 393
Score = 248 bits (633), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 202/376 (53%), Gaps = 13/376 (3%)
Query: 33 DAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLS 92
+ +LK L++ H G K FAGW MP+ Y +++ L+ R + LFD+SHM ++
Sbjct: 29 ETSSLKTLPLYELHEKAGAKFGAFAGWRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIA 88
Query: 93 LKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGC 152
++G V FL + D A L G + NE G +DD ++T++ + LV NAG
Sbjct: 89 VEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGN 148
Query: 153 RDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF 212
D A +E F + I ER LLALQGP AA VL L+ F
Sbjct: 149 AQADFAELEKRAFGFECQ------VIALERVLLALQGPQAAAVLADAGLPGNELLFMQGF 202
Query: 213 RILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRL 272
F+TR+GYTGEDGFEI++P A LA+ +L S +V GL ARDSLRL
Sbjct: 203 EPQQ----DWFITRSGYTGEDGFEIALPIGCARALAEKLLGDS--RVEWVGLAARDSLRL 256
Query: 273 EAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG 332
EAGLCL+GND+ TP++A LTWA+ K R + F GA+ L+ L +GP RVG
Sbjct: 257 EAGLCLHGNDITPDTTPIDAALTWAVPKNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQ 316
Query: 333 G-PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAY 391
P R+ + + D +GN IG +TSGGF P +AMGYV GT+V E+RGK
Sbjct: 317 TRQPIRAGAVLFDNEGNRIGVVTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKI 376
Query: 392 DGNITKMPFVPTKYYK 407
++ +PFV +Y+K
Sbjct: 377 ALSVHSLPFVEQRYFK 392
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOP|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOR|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOS|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
Length = 364
Score = 230 bits (587), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 204/368 (55%), Gaps = 17/368 (4%)
Query: 37 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGK 96
+K+T L + HV G KMV FAGW MP+ Y SI E + R++ +FDVSHM +KG
Sbjct: 1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGP 59
Query: 97 DCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 156
+ V F++ L+ D + L G +V NENGG IDD V+ KV D +VVNA +KD
Sbjct: 60 EAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKD 119
Query: 157 LAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILD 216
I++H K+F + ++S D +L+A QGP A LQ L +D L ++ + FR
Sbjct: 120 FNWIKSHSKNFDVEVSNIS----DTTALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSI 175
Query: 217 INGVSCFLTRTGYTGEDGFEISVPSERAVDLAKA---ILEKSEGKVRLTGLGARDSLRLE 273
+ GV ++RTGYTGEDGFE+ + ++ A + A +L K +G R GLGARD RLE
Sbjct: 176 VAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDG--RPAGLGARDVCRLE 233
Query: 274 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG 333
A LYG DM+++ P E GL+W + + F+G E +LK ++ +G
Sbjct: 234 ATYLLYGQDMDENTNPFEVGLSWVV----KLNKDFVGKEALLKAKEKVERKLVALELSGK 289
Query: 334 PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVR-GKAYD 392
AR +V + G +GEITSG FSP L K+IA+ V + K G ++ + GK +
Sbjct: 290 RIARKGYEVL-KNGERVGEITSGNFSPTLGKSIALALVSKSV-KIGDQLGVVFPGGKLVE 347
Query: 393 GNITKMPF 400
+ K PF
Sbjct: 348 ALVVKKPF 355
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase
From Bacillus Subtilis
pdb|1YX2|B Chain B, Crystal Structure Of The Probable Aminomethyltransferase
From Bacillus Subtilis
Length = 365
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 200/369 (54%), Gaps = 16/369 (4%)
Query: 37 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGK 96
LK+T L D + GGK + F GW +P+Q+ SI + R LFDVSH + + G
Sbjct: 5 LKRTPLFDLYKEYGGKTIDFGGWELPVQFS-SIKKEHEAVRTAAGLFDVSHXGEVEVSGN 63
Query: 97 DCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 156
D + FL++L DV+ L PG T +GG++DD +I + ++ LV+NA DKD
Sbjct: 64 DSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENRYLLVINASNIDKD 123
Query: 157 LAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLAAPVLQHLTKDDLSKLY-FGEFRI 214
LA + H GDV + D+ +LLA+QGP A +L++LT D+S L F
Sbjct: 124 LAWXKEHA------AGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDE 177
Query: 215 LDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRL-TGLGARDSLRLE 273
DI+G ++RTGYTGEDG+EI S+ A + K I++ + + GLGARD+LR E
Sbjct: 178 ADISGRKALISRTGYTGEDGYEIYCRSDDAXHIWKKIIDAGDAYGLIPCGLGARDTLRFE 237
Query: 274 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FA 331
A + LYG ++ + +TP+EAG+ +A+ + + E F G + +Q + G + VG
Sbjct: 238 ANIPLYGQELTRDITPIEAGIGFAV--KHKKESDFFGKSVLSEQKENGAKRKLVGLEXIE 295
Query: 332 GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAY 391
G P + + G +G++T+G SP L KN+ + + S + GT V +E+R K
Sbjct: 296 KGIPRHGYEVFQN--GKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKKLV 353
Query: 392 DGNITKMPF 400
+ K PF
Sbjct: 354 KAKVVKTPF 362
>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|B Chain B, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|C Chain C, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|D Chain D, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8J|A Chain A, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|B Chain B, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|C Chain C, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|D Chain D, Crystal Structure Of Et-Ehred Complex
Length = 364
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 191/372 (51%), Gaps = 25/372 (6%)
Query: 38 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKD 97
++T L++ H G +MV F GW MP+ Y I E R + +FDVSHM + L+G
Sbjct: 3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHH-AVRTDAGMFDVSHMTIVDLRGSR 61
Query: 98 CVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 156
FL L+ DVA L G + N +GG IDD ++ +D LVVN+ R+KD
Sbjct: 62 TREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKD 121
Query: 157 LAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILD 216
L+ I H + F G +++ + D+ S++A+QGP A L D + G
Sbjct: 122 LSWITQHAEPF---GIEIT--VRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFG 176
Query: 217 INGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGL 276
+ F+ TGYTGE G+EI++P+E+A D +A++E V+ GLGARD+LRLEAG+
Sbjct: 177 VQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGM 233
Query: 277 CLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFF 330
LYG +M++ ++P+ A + W I A+ F+G E + Q + G + G
Sbjct: 234 NLYGQEMDETISPLAANMGWTIA-WEPADRDFIGREALEVQREHGTEKLVGLVMTEKGVL 292
Query: 331 AGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 389
P R D QGN G ITSG FSP L +IA+ V G+ G +++R +
Sbjct: 293 RNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNR 345
Query: 390 AYDGNITKMPFV 401
+TK FV
Sbjct: 346 EMPVKVTKPVFV 357
>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|B Chain B, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|C Chain C, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|D Chain D, Crystal Structure Of Etd97n-Ehred Complex
Length = 364
Score = 191 bits (484), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 191/372 (51%), Gaps = 25/372 (6%)
Query: 38 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKD 97
++T L++ H G +MV F GW MP+ Y I E R + +FDVSHM + L+G
Sbjct: 3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHH-AVRTDAGMFDVSHMTIVDLRGSR 61
Query: 98 CVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 156
FL L+ DVA L G + N +GG ID+ ++ +D LVVN+ R+KD
Sbjct: 62 TREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDNLIVYYFTEDFFRLVVNSATREKD 121
Query: 157 LAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILD 216
L+ I H + F G +++ + D+ S++A+QGP A L D + G
Sbjct: 122 LSWITQHAEPF---GIEIT--VRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFG 176
Query: 217 INGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGL 276
+ F+ TGYTGE G+EI++P+E+A D +A++E V+ GLGARD+LRLEAG+
Sbjct: 177 VQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGM 233
Query: 277 CLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFF 330
LYG +M++ ++P+ A + W I A+ F+G E + Q + G + G
Sbjct: 234 NLYGQEMDETISPLAANMGWTIA-WEPADRDFIGREALEVQREHGTEKLVGLVMTEKGVL 292
Query: 331 AGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 389
P R D QGN G ITSG FSP L +IA+ V G+ G +++R +
Sbjct: 293 RNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNR 345
Query: 390 AYDGNITKMPFV 401
+TK FV
Sbjct: 346 EMPVKVTKPVFV 357
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
pdb|1V5V|B Chain B, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
Length = 401
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/401 (31%), Positives = 214/401 (53%), Gaps = 42/401 (10%)
Query: 37 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGK 96
+K+ + D+H + K+ FAGW MPI Y SI E L R +FDVSHM + +GK
Sbjct: 5 VKRVHIFDWHKEHARKIEEFAGWEMPIWY-SSIKEEHLAVRNAVGIFDVSHMGEIVFRGK 63
Query: 97 DCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 156
D + FL+ + D++ +GT T+ NE G D++++ + ++ ++ ++ +K
Sbjct: 64 DALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKL 123
Query: 157 LA---HIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 213
A +++ ++ FT ++ +D ++ A+QGP A + + L D++++++ + R
Sbjct: 124 YAWFTYLKRTIEQFTKLDLEIELKTYD-IAMFAVQGPKARDLAKDLFGIDINEMWWFQAR 182
Query: 214 ILDINGVSCFLTRTGYTGEDGFEISVPS--------------ERAVDLAKAILEKSEGK- 258
++++G+ L+R+GYTGE+GFE+ + E+A+ + + ILE EGK
Sbjct: 183 WVELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILE--EGKK 240
Query: 259 --VRLTGLGARDSLRLEAGLCLYGNDMEQ---------HVTPVEAGLTWAIGKRRRAEGG 307
++ GLGARD+LRLEAG LYGN+ ++ VTP++A L +AI +
Sbjct: 241 YGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAI----YWDKD 296
Query: 308 FLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKN 365
F+G + +LKQ + G + V F G P R KV+ G IGE+TSG SP L
Sbjct: 297 FIGKDALLKQKERGVGRKLVHFKMIDKGIP-REGYKVY-ANGEMIGEVTSGTLSPLLNVG 354
Query: 366 IAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV-PTKY 405
I + +VK K G ++++E+RG+ PF P KY
Sbjct: 355 IGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYDPKKY 395
>pdb|1VLO|A Chain A, Crystal Structure Of Aminomethyltransferase (T Protein;
Tetrahydrofolate-Dependent) Of Glycine Cleavage System
(Np417381) From Escherichia Coli K12 At 1.70 A
Resolution
Length = 381
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 181/369 (49%), Gaps = 19/369 (5%)
Query: 38 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKD 97
++T L++ H G + V F GW P+ Y I E R + FDVSH + L+G
Sbjct: 15 QQTPLYEQHTLCGARXVDFHGWXXPLHYGSQIDEHHA-VRTDAGXFDVSHXTIVDLRGSR 73
Query: 98 CVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 156
FL L+ DVA L G + N +GG IDD ++ +D LVVN+ R+KD
Sbjct: 74 TREFLRYLLANDVAKLTKSGKALYSGXLNASGGVIDDLIVYYFTEDFFRLVVNSATREKD 133
Query: 157 LAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILD 216
L+ I H + F + + D+ S +A+QGP A L D + G
Sbjct: 134 LSWITQHAEPF-----GIEITVRDDLSXIAVQGPNAQAKAATLFNDAQRQAVEGXKPFFG 188
Query: 217 INGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGL 276
+ F+ TGYTGE G+EI++P+E+A D +A++E V+ GLGARD+LRLEAG
Sbjct: 189 VQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGX 245
Query: 277 CLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA 336
LYG + ++ ++P+ A W I A+ F+G E + Q + G + VG
Sbjct: 246 NLYGQEXDETISPLAANXGWTIAW-EPADRDFIGREALEVQREHGTE-KLVGLVXTEKGV 303
Query: 337 RSHS---KVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYD 392
+ + D QGN G ITSG FSP L +IA+ V G+ G +++R +
Sbjct: 304 LRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREXP 360
Query: 393 GNITKMPFV 401
+TK FV
Sbjct: 361 VKVTKPVFV 369
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 159/344 (46%), Gaps = 27/344 (7%)
Query: 68 SIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNEN 127
SI +S + +++ ++DV+ + + GKD ++ + D++ G +EN
Sbjct: 43 SIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMTCRDLSKSKIGRCYYCPIIDEN 102
Query: 128 GGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDER----- 182
G ++D V+ K+ ++ ++ + D D+ F AKG S H D +
Sbjct: 103 GNLVNDPVVLKLDENKWWISI----ADSDVI--------FFAKGL-ASGHKFDVKIVEPV 149
Query: 183 -SLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPS 241
++A+QGP + +++ + +++L F F D G + R+G++ + G+E+ V +
Sbjct: 150 VDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVEN 209
Query: 242 ERA-VDLAKAILEKSEGKVRLTGLGARDSL-RLEAGLCLYGNDMEQHVTPVEAGLTWAIG 299
++ L + E GK G G + + R+E+ L YGND + + P E G +
Sbjct: 210 TQSGQKLYDHLFEV--GKEFNVGPGCPNLIERIESALLSYGNDFDNNDNPFECGFDQYVS 267
Query: 300 KRRRAEGGFLGAEKILKQLDEGPP--VRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGG 357
++ FLG EK+ + +GP +R V ++DE N IGE+ S
Sbjct: 268 --LDSDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYDENNNVIGELRSAC 325
Query: 358 FSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 401
+SP +K I + +K +A KI++ +GN+ +PF+
Sbjct: 326 YSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI 369
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
pdb|3ADA|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 964
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/379 (22%), Positives = 157/379 (41%), Gaps = 18/379 (4%)
Query: 38 KKTALHDFHVANGGKMVPFAGWSMPIQY-------KDSIMESTLNCRQNGSLFDVSHMCG 90
+ TA+H +H+A+G K W P Y +++ R + + D S +
Sbjct: 574 RLTAMHPWHLAHGAKFEDVGQWKRPWYYPQDGESMDEAVYRECKAVRDSVGMLDASTLGK 633
Query: 91 LSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNA 150
+ ++GKD FL ++ L G G V +G DD V ++ +D +
Sbjct: 634 IEIRGKDAAEFLNRMYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLMHTTT 693
Query: 151 GCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKD-DLSKLYF 209
G L +E +++ + + ++ + +A+ GP + V+ L D+S F
Sbjct: 694 GGAADVLDWLEEWLQTEWPELDVTCTSVTEQLATVAVVGPRSRDVIAKLASSLDVSNDAF 753
Query: 210 GEFRILDI---NGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEK-SEGKVRLTGLG 265
D+ +G+ ++R ++GE FEI++P+ + + + + E + G
Sbjct: 754 KFMAFQDVTLDSGIEARISRISFSGELAFEIAIPAWHGLQVWEDVYAAGQEFNITPYGTE 813
Query: 266 ARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG--GFLGAEKI---LKQLDE 320
LR E G + G D + VTP +AG+ W + K + G F + + K L
Sbjct: 814 TMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKDFVGKRSFSREDNVREDRKHLVS 873
Query: 321 GPPVRRVGFFAGGPPARSHSKVHDEQGNPI-GEITSGGFSPCLKKNIAMGYVKSGLHKAG 379
PV A G + V E P+ G +T SP L + + +K+G ++ G
Sbjct: 874 VLPVDSSLRLAEGAALVAADAVASEGVTPMEGWVTHAYNSPALGRTFGLALIKNGRNRIG 933
Query: 380 TKVKIEVRGKAYDGNITKM 398
+K V G+ D ++ +
Sbjct: 934 EVLKTPVDGQLVDVQVSDL 952
>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/403 (22%), Positives = 167/403 (41%), Gaps = 25/403 (6%)
Query: 25 IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQY-------KDSIMESTLNCR 77
+A R+ + + TA+H +H+++G + W P Y ++ + R
Sbjct: 562 LAGRNRGDQLDPARITAMHSWHLSHGAEFEDVGQWKRPWYYPQAGETMDQAVYRESKAVR 621
Query: 78 QNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVIT 137
+ + D + + + ++GKD FL ++ L G G V +G DD V
Sbjct: 622 DSVGMLDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTL 681
Query: 138 KVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQ 197
++ +D L G L +E +++ + ++ + +A+ GP + V+
Sbjct: 682 RLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPRSRDVIA 741
Query: 198 HLTKD-DLSKLYFGEFRILDI---NGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE 253
L D+S F D+ +G+ ++R ++GE FEI+VP+ + + + +
Sbjct: 742 KLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGELAFEIAVPAWHGLRVWEDVYA 801
Query: 254 KSEGKVRLTGLGARDS--LRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRR-----RAEG 306
E + +T G LR E G + G D + VTP +AG+ W + K + R+
Sbjct: 802 AGE-EFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKDFIGNRSYS 860
Query: 307 GFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPI-GEITSGGFSPCLKKN 365
A + KQL PV + G + + E P+ G +TS SP L +
Sbjct: 861 RADNAREDRKQLVSVLPVDKSLRLPEGAALVASDALASEGITPMEGWVTSSYDSPNLGRT 920
Query: 366 IAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 408
+ +K+G ++ G +K V + D +++ T Y P
Sbjct: 921 FGLALIKNGRNRIGEVLKTPVGDQLVDVVVSE-----TVLYDP 958
>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/404 (22%), Positives = 166/404 (41%), Gaps = 27/404 (6%)
Query: 25 IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQY-------KDSIMESTLNCR 77
+A R+ + + TA H +H+++G + W P Y ++ + R
Sbjct: 562 LAGRNRGDQLDPARITAXHSWHLSHGAEFEDVGQWKRPWYYPQAGETXDQAVYRESKAVR 621
Query: 78 QNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVIT 137
+ D + + + ++GKD FL ++ L G G V +G DD V
Sbjct: 622 DSVGXLDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGXGRYGVXCKADGXIFDDGVTL 681
Query: 138 KVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQ 197
++ +D L G L +E +++ + ++ + +A+ GP + V+
Sbjct: 682 RLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPRSRDVIA 741
Query: 198 HLTKD-DLSK--LYFGEFR--ILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAIL 252
L D+S F F+ +LD +G+ ++R ++GE FEI+VP+ + + + +
Sbjct: 742 KLASTVDVSNEGFKFXAFKDVVLD-SGIEARISRISFSGELAFEIAVPAWHGLRVWEDVY 800
Query: 253 EKSEGKVRLTGLGARDS--LRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRR-----RAE 305
E + +T G LR E G + G D + VTP +AG W + K + R+
Sbjct: 801 AAGE-EFNITPYGTETXHVLRAEKGFIIVGQDTDGTVTPQDAGXEWVVSKLKDFIGNRSY 859
Query: 306 GGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPI-GEITSGGFSPCLKK 364
A + KQL PV + G + + E P G +TS SP L +
Sbjct: 860 SRADNAREDRKQLVSVLPVDKSLRLPEGAALVASDALASEGITPXEGWVTSSYDSPNLGR 919
Query: 365 NIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 408
+ +K+G ++ G +K V + D +++ T Y P
Sbjct: 920 TFGLALIKNGRNRIGEVLKTPVGDQLVDVVVSE-----TVLYDP 958
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 143/345 (41%), Gaps = 32/345 (9%)
Query: 76 CRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSV 135
R +++D++ + L + G + L++L AD+A PG T T+ + GG D
Sbjct: 496 TRTAVAMYDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDIT 554
Query: 136 ITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERS---LLALQGPL 191
+ ++ +D L N D A+ E + T G W + D + L GPL
Sbjct: 555 VARLSEDTFQLGANGNI---DTAYFERAARHQTQSGSATDWVQVRDTTGGTCCIGLWGPL 611
Query: 192 AAPVLQHLTKDDLSKLYFGEFRILD--INGVSCFLTRTGYTGEDGFEISVPSERAVDLAK 249
A ++ ++ DD + FR + I G+ R Y GE G+E+ ++ L
Sbjct: 612 ARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWD 671
Query: 250 AILEKSEG-KVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGF 308
A+ + + V G A SLRLE G +G DM P EAGL +A+ + A+ F
Sbjct: 672 ALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAV---KMAKESF 728
Query: 309 LGAEKILKQLDEGPPVRRV---------GFFAGGPPARSHSKVHDEQGNPIGEITSGGFS 359
+G + + +E RR+ G P + EQ +G +TS +
Sbjct: 729 IGKGALEGRTEEA-SARRLRCLTIDDGRSIVLGKEPV-----FYKEQA--VGYVTSAAYG 780
Query: 360 PCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 404
+ K IA Y+ G G V IE G+ +T+ P K
Sbjct: 781 YTVAKPIAYSYLP-GTVSVGDSVDIEYFGRRITATVTEDPLYDPK 824
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 142/345 (41%), Gaps = 32/345 (9%)
Query: 76 CRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSV 135
R +++D++ + L + G + L++L AD+A PG T T+ + GG
Sbjct: 493 TRTAVAMYDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSAIT 551
Query: 136 ITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDER---SLLALQGPL 191
+ ++ +D L N D A+ E + T G W + D + L GPL
Sbjct: 552 VARLSEDTFQLGANGNI---DTAYFERAARHQTQSGSATDWVQVRDTTGGTCCIGLWGPL 608
Query: 192 AAPVLQHLTKDDLSKLYFGEFRILD--INGVSCFLTRTGYTGEDGFEISVPSERAVDLAK 249
A ++ ++ DD + FR + I G+ R Y GE G+E+ ++ L
Sbjct: 609 ARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWD 668
Query: 250 AILEKSEG-KVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGF 308
A+ + + V G A SLRLE G +G DM P EAGL +A+ + A+ F
Sbjct: 669 ALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAV---KMAKESF 725
Query: 309 LGAEKILKQLDEGPPVRRV---------GFFAGGPPARSHSKVHDEQGNPIGEITSGGFS 359
+G + + +E RR+ G P + EQ +G +TS +
Sbjct: 726 IGKGALEGRTEEA-SARRLRCLTIDDGRSIVLGKEPV-----FYKEQA--VGYVTSAAYG 777
Query: 360 PCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 404
+ K IA Y+ G G V IE G+ +T+ P K
Sbjct: 778 YTVAKPIAYSYLP-GTVSVGDSVDIEYFGRRITATVTEDPLYDPK 821
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From
Leptospirillum Rubarum
Length = 355
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 45/330 (13%)
Query: 93 LKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGC 152
++G+D FL+ + D+ + + + F N + D+ +D I L AG
Sbjct: 50 VEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNF-EDKIALFPPAGT 108
Query: 153 RDKDLAHIEAHMKSFT-AKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGE 211
R++ + H++ ++ T AK D S H + R L GP VL L ++ S
Sbjct: 109 REEFVNHLKKYLFFRTKAKITDXSDHFREIR----LVGPETISVLLSLFDNNFSG---SS 161
Query: 212 FRILDINGVSCFLTRTGYTGE-------------DGFEISVPSERAVDLAK--AILEKSE 256
FR L NG + T + D FE + S K +L++S
Sbjct: 162 FRXLK-NGGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESS 220
Query: 257 GKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILK 316
LT E G+ L+ +++ P EAGL ++G +G ++G E + +
Sbjct: 221 YLAYLT----------EKGIPLFPSELNDSFFPAEAGLD-SVGVSYN-KGCYVGQEPVTR 268
Query: 317 QLDEGPPVRRVGFF--AGGPPARSHSKV---HDEQGNPIGEITSGGFSPCLKKNIAMGYV 371
+G R + F GGP + V + + GN G +T S L I +GY+
Sbjct: 269 LKFQGHLNRSLAGFRLEGGPFPKXEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYI 328
Query: 372 KSGLHKAGTKVKIEVRGKAYDGNITKMPFV 401
K + GT++ + A + +PFV
Sbjct: 329 KRNFSENGTELLLP---DAQLVRVHSLPFV 355
>pdb|4DWE|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_03992)
From Bacteroides Ovatus Atcc 8483 At 2.01 A Resolution
Length = 480
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 91 LSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNA 150
L+L G+D PF V ++ GL G E+ S +D D + +N
Sbjct: 377 LNLNGEDSAPFYYPSVTVNIFGLKXGDI-------ESIKSNEDVTGLSYGDHKDFFXLNI 429
Query: 151 GCRDKDLAHIEAHMKSFTAKGGDVS 175
CR H E +K + A DVS
Sbjct: 430 DCRKYLAEHAENFVKRYEANPTDVS 454
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 210 GEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDS 269
GE ++NG+ F Y +D +V +ER L + + E + VR+ G G ++
Sbjct: 318 GESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYEN 377
Query: 270 -----LRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGF 308
L E G+ ++ D TP + T+ KR AE +
Sbjct: 378 NLFYDLADENGILVW-QDFMFACTPYPSDPTFL--KRVEAEAVY 418
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 210 GEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDS 269
GE ++NG+ F Y +D +V +ER L + + E + VR+ G G ++
Sbjct: 320 GESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYEN 379
Query: 270 -----LRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGF 308
L E G+ ++ D TP + T+ KR AE +
Sbjct: 380 NLFYDLADENGILVW-QDFMFACTPYPSDPTFL--KRVEAEAVY 420
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 210 GEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDS 269
GE ++NG+ F Y +D +V +ER L + + E + VR+ G G ++
Sbjct: 318 GESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYEN 377
Query: 270 -----LRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGF 308
L E G+ ++ D TP + T+ KR AE +
Sbjct: 378 NLFYDLADENGILVW-QDFMFACTPYPSDPTFL--KRVEAEAVY 418
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 210 GEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDS 269
GE ++NG+ F Y +D +V +ER L + + E + VR+ G G ++
Sbjct: 318 GESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYEN 377
Query: 270 -----LRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGF 308
L E G+ ++ D TP + T+ KR AE +
Sbjct: 378 NLFYDLADENGILVW-QDFMFACTPYPSDPTFL--KRVEAEAVY 418
>pdb|3ID9|A Chain A, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
pdb|3ID9|B Chain B, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
Length = 171
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 339 HSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHK 377
H+ +HD Q PI E++ GFS I+ G +G ++
Sbjct: 118 HNPIHDVQXVPINELSYYGFSETFINLISGGLANAGSYQ 156
>pdb|2PPQ|A Chain A, Crystal Structure Of The Homoserine Kinase From
Agrobacterium Tumefaciens
Length = 322
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 229 YTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLE 273
+ +GFEI P+ +VD K + +KSE + G R+ +R E
Sbjct: 129 HLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPE 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,087,624
Number of Sequences: 62578
Number of extensions: 571834
Number of successful extensions: 1397
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 22
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)