Query 015320
Match_columns 409
No_of_seqs 187 out of 1717
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02319 aminomethyltransferas 100.0 4.3E-95 9E-100 733.1 46.4 401 5-409 1-404 (404)
2 COG0404 GcvT Glycine cleavage 100.0 1.3E-86 2.9E-91 656.6 42.4 369 34-408 2-377 (379)
3 PRK13579 gcvT glycine cleavage 100.0 1.3E-83 2.9E-88 643.4 43.7 365 32-407 4-370 (370)
4 PRK12486 dmdA putative dimethy 100.0 3.9E-79 8.5E-84 609.5 42.1 355 34-401 8-368 (368)
5 KOG2770 Aminomethyl transferas 100.0 3.3E-78 7.1E-83 566.9 33.6 394 11-409 2-401 (401)
6 PRK00389 gcvT glycine cleavage 100.0 3.7E-77 8E-82 595.6 42.5 353 37-405 2-358 (359)
7 TIGR00528 gcvT glycine cleavag 100.0 4.1E-77 8.8E-82 595.3 40.9 356 37-402 1-360 (361)
8 TIGR01372 soxA sarcosine oxida 100.0 9.5E-76 2.1E-80 649.3 43.1 369 35-408 594-983 (985)
9 KOG2844 Dimethylglycine dehydr 100.0 5.2E-70 1.1E-74 548.7 30.7 363 35-405 450-850 (856)
10 PRK09559 putative global regul 100.0 4.3E-51 9.3E-56 402.2 31.3 300 80-403 19-326 (327)
11 PF01571 GCV_T: Aminomethyltra 100.0 4.9E-44 1.1E-48 331.1 24.5 209 82-297 1-211 (211)
12 COG0354 Predicted aminomethylt 100.0 2E-40 4.4E-45 319.4 17.1 289 74-407 8-301 (305)
13 KOG2929 Transcription factor, 100.0 1.1E-29 2.3E-34 237.5 14.5 283 80-403 30-338 (348)
14 PF08669 GCV_T_C: Glycine clea 99.8 1.3E-20 2.8E-25 152.5 13.2 93 306-398 1-95 (95)
15 TIGR01375 soxG sarcosine oxida 99.8 1.2E-18 2.7E-23 153.1 15.1 115 133-255 33-150 (152)
16 TIGR03317 ygfZ_signature folat 99.8 2.1E-19 4.5E-24 135.7 5.4 62 266-330 2-66 (67)
17 PF04268 SoxG: Sarcosine oxida 99.2 2.3E-10 5.1E-15 99.8 14.4 109 135-254 33-144 (147)
18 COG4583 Sarcosine oxidase gamm 99.1 3E-09 6.5E-14 94.2 12.8 147 84-254 31-183 (189)
19 PF04268 SoxG: Sarcosine oxida 97.7 0.00023 5E-09 62.1 9.5 84 75-164 59-145 (147)
20 TIGR01375 soxG sarcosine oxida 97.5 0.00067 1.5E-08 59.5 10.0 79 79-163 68-149 (152)
21 COG4583 Sarcosine oxidase gamm 97.2 0.0015 3.2E-08 58.4 7.5 82 78-165 101-185 (189)
22 PF10396 TrmE_N: GTP-binding p 96.1 0.051 1.1E-06 45.1 9.3 63 86-151 12-81 (114)
23 PF10396 TrmE_N: GTP-binding p 94.0 1.3 2.8E-05 36.9 11.3 82 180-267 12-105 (114)
24 PF08170 POPLD: POPLD (NUC188) 93.8 0.093 2E-06 41.9 4.1 49 234-285 1-49 (92)
25 COG0486 ThdF Predicted GTPase 93.7 0.14 3E-06 52.2 6.2 65 86-151 17-88 (454)
26 PF01571 GCV_T: Aminomethyltra 90.4 2.1 4.6E-05 39.0 9.5 72 180-254 5-82 (211)
27 PRK00389 gcvT glycine cleavage 88.0 3.9 8.4E-05 40.8 10.1 80 172-254 42-127 (359)
28 TIGR00528 gcvT glycine cleavag 87.3 4.2 9.2E-05 40.7 9.9 78 173-253 42-125 (361)
29 PLN02319 aminomethyltransferas 87.3 4.5 9.8E-05 41.2 10.2 80 172-254 73-158 (404)
30 COG0404 GcvT Glycine cleavage 84.5 6.2 0.00013 39.9 9.4 79 172-253 46-130 (379)
31 TIGR00450 mnmE_trmE_thdF tRNA 84.5 3.2 7E-05 42.9 7.5 65 86-151 7-78 (442)
32 PRK13579 gcvT glycine cleavage 81.4 13 0.00029 37.2 10.5 78 173-254 51-134 (370)
33 PRK12486 dmdA putative dimethy 80.0 18 0.00038 36.4 10.8 78 172-252 52-135 (368)
34 PRK05291 trmE tRNA modificatio 78.8 5.5 0.00012 41.2 6.9 74 86-164 17-97 (449)
35 PF02470 MCE: mce related prot 76.9 30 0.00066 26.3 9.2 47 328-375 6-53 (81)
36 TIGR01372 soxA sarcosine oxida 75.7 17 0.00038 41.5 10.3 80 172-254 644-729 (985)
37 PRK09559 putative global regul 73.8 18 0.0004 35.6 8.8 76 175-254 20-101 (327)
38 PRK05291 trmE tRNA modificatio 65.7 31 0.00067 35.7 8.7 80 180-264 17-107 (449)
39 COG0354 Predicted aminomethylt 65.1 29 0.00064 34.0 8.0 77 174-254 14-96 (305)
40 TIGR00450 mnmE_trmE_thdF tRNA 64.8 28 0.0006 36.0 8.2 80 181-264 8-99 (442)
41 PF11834 DUF3354: Domain of un 63.6 13 0.00028 28.0 4.0 44 96-146 25-68 (69)
42 PF06978 POP1: Ribonucleases P 61.8 7.4 0.00016 35.3 2.9 56 40-96 131-187 (187)
43 KOG2770 Aminomethyl transferas 56.0 31 0.00068 34.2 6.2 77 80-161 163-244 (401)
44 COG0486 ThdF Predicted GTPase 52.9 76 0.0017 32.8 8.7 74 181-255 18-103 (454)
45 KOG2844 Dimethylglycine dehydr 51.8 72 0.0016 34.7 8.5 84 77-163 605-691 (856)
46 COG3277 GAR1 RNA-binding prote 48.6 1.2E+02 0.0026 24.5 7.4 41 325-367 14-54 (98)
47 PRK13149 H/ACA RNA-protein com 37.4 1.8E+02 0.0039 21.9 7.3 41 333-375 21-61 (73)
48 PF05239 PRC: PRC-barrel domai 36.2 88 0.0019 23.3 4.9 35 338-372 10-44 (79)
49 PRK10807 paraquat-inducible pr 33.1 2.1E+02 0.0045 30.5 8.7 57 327-384 46-107 (547)
50 COG3603 Uncharacterized conser 32.3 2.8E+02 0.0062 23.2 7.4 86 134-255 35-123 (128)
51 COG4044 Uncharacterized protei 27.1 2.5E+02 0.0055 25.9 6.8 62 172-241 30-97 (247)
52 PF14578 GTP_EFTU_D4: Elongati 26.5 1.2E+02 0.0026 23.6 4.1 50 325-388 20-69 (81)
53 PRK10807 paraquat-inducible pr 22.0 2.4E+02 0.0053 30.0 6.8 41 334-375 169-209 (547)
54 KOG2055 WD40 repeat protein [G 21.6 87 0.0019 32.2 3.1 23 346-369 478-500 (514)
55 PF08308 PEGA: PEGA domain; I 21.5 2.9E+02 0.0062 20.1 5.4 13 338-351 11-23 (71)
56 PF13953 PapC_C: PapC C-termin 20.1 1.7E+02 0.0037 21.5 3.8 45 333-389 8-52 (68)
No 1
>PLN02319 aminomethyltransferase
Probab=100.00 E-value=4.3e-95 Score=733.08 Aligned_cols=401 Identities=83% Similarity=1.334 Sum_probs=375.9
Q ss_pred chhhhhhHHHHhhhhhcchhhhhhhccCCCcccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEe
Q 015320 5 SLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFD 84 (409)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~D 84 (409)
.|||||||+|||-|.||||+..||+|+|. |++|+||||+.|+++||+|++++||+||.||++++.+||+|+|++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~r~tpl~~~~~~~Ga~~~~~~Gwe~p~~y~~~~~~E~~a~R~~~gl~D 79 (404)
T PLN02319 1 ALWQLGQSLTRRAAQADKKALSRRYFASE-ANLKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFD 79 (404)
T ss_pred ChHHHHHHHHhhhhhccccchhcccccCC-CCcccCCcHHHHHHCCCEEEEECCEehhhhcCccHHHHHHHHHhCeEEEE
Confidence 38999999999999999999999999976 89999999999999999999999999999997458899999999999999
Q ss_pred CCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHH
Q 015320 85 VSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 164 (409)
Q Consensus 85 lS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~ 164 (409)
+|++++|+|+|+||.+|||+++||||+.+++|+++||++||++|+|++|++|+|+++|+|||+++++..+.+++||++++
T Consensus 80 lS~~~~i~V~G~Da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~ 159 (404)
T PLN02319 80 VSHMCGLSLKGKDAIPFLETLVVADIAGLKDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLVVNAGCRDKDLAHIEEHM 159 (404)
T ss_pred CCCcEEEEEECCCHHHHHhhhcccccCCCCCCCEEEeEEECCCCeEEEEEEEEEEcCCEEEEEECCccHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999998
Q ss_pred hhccCCCCCeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccH
Q 015320 165 KSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERA 244 (409)
Q Consensus 165 ~~~~~~~~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a 244 (409)
..++..+.+|++++++++++|+||||+|+++|+++.+.+++++||+.++.+.+++.+++++|++|+||+||||++|.+.+
T Consensus 160 ~~~~~~~~~v~~~~~~~~~~l~lqGP~s~~~l~~l~~~~l~~~~f~~~~~~~i~g~~v~i~R~g~tGE~G~El~~p~~~a 239 (404)
T PLN02319 160 KAFKAKGGDVSWHVHDERSLLALQGPLAAPVLQHLTKEDLSKMYFGDFRITDINGADCFLTRTGYTGEDGFEISVPSEHA 239 (404)
T ss_pred hhccCCCCcEEEEEcCCeEEEEEECccHHHHHHHhcccchhhCCCceEEEEEECCeeEEEEEeeecCCCeEEEEEcHHHH
Confidence 65421234788877788999999999999999999887888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceEecccchhhhhhhcccccccCCCCCCCCccccccccccc---cccCcCCCCcCHHHHHhhHhcC
Q 015320 245 VDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIG---KRRRAEGGFLGAEKILKQLDEG 321 (409)
Q Consensus 245 ~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~---f~K~~~GcyiGqE~lar~~~~g 321 (409)
.+||+.|+++|.+++.++|+.+|+++|||+|+|.+|+|++++++|+|+||+|+|+ |+| |||+|||+++|++++|
T Consensus 240 ~~l~~~L~~aG~~g~~~~G~~a~d~lRiEaG~p~~g~dl~~~~~P~EagL~~~v~~~~~~K---g~fiGqEalar~~~~g 316 (404)
T PLN02319 240 VDLAKALLEKSEGKVRLTGLGARDSLRLEAGLCLYGNDLEEHITPVEAGLAWTIGKRRRAE---GGFLGADVILKQLKEG 316 (404)
T ss_pred HHHHHHHHhCcccCcEecchhHhhHHHhhcCccccCCcCCCCCCHHHCCccceecccccCC---CCCcCHHHHHHHHhcC
Confidence 9999999998645689999999999999999999999999999999999999987 455 9999999999999999
Q ss_pred CCeEEEEEEeCCCCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCc
Q 015320 322 PPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 401 (409)
Q Consensus 322 ~~rrlv~l~~~~~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~ 401 (409)
++||++++..++.++.+|++|++.+|+.||.|||++|||+++++||||||+.+++.+|+.++|++.|+.++|+|+.+||+
T Consensus 317 ~~rrlvgl~~~~~~~~~g~~v~~~~g~~VG~VTS~~~Sp~l~~~Iala~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~ 396 (404)
T PLN02319 317 VSRRRVGFISSGAPARSHSEILDESGEKIGEVTSGGFSPCLKKNIAMGYVKSGFHKAGTEVKVEVRGKMYDAVVTKMPFV 396 (404)
T ss_pred CCeEEEEEEECCccCCCCCEEEeCCCCEEEEEeeecccccCCceEEEEEEChhhcCCCCEEEEEECCeEEEEEEECCCCc
Confidence 99999999765556678999985579999999999999999999999999999888999999999999999999999999
Q ss_pred CCCCCCCC
Q 015320 402 PTKYYKPS 409 (409)
Q Consensus 402 ~~~~~~~~ 409 (409)
++.|||+|
T Consensus 397 ~~~~~~~~ 404 (404)
T PLN02319 397 PTKYYKPP 404 (404)
T ss_pred CcccCCCC
Confidence 99999987
No 2
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-86 Score=656.58 Aligned_cols=369 Identities=42% Similarity=0.688 Sum_probs=347.6
Q ss_pred CcccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCC
Q 015320 34 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL 113 (409)
Q Consensus 34 ~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l 113 (409)
.+++|+||||++|.++||+|.+++||+||.||+.++.+||+|+|++|||||+|||+++.|+||||.+|||+++|||+++|
T Consensus 2 ~~~~r~tpl~~~~~~~GA~~~~~~Gw~~p~~y~~~v~~Eh~avR~~aGlfDvShmgk~~V~GpdA~~~L~~l~~ndv~kl 81 (379)
T COG0404 2 ARPLKRTPLYDRHKALGAVFGEFGGWEMPVWYAKSVMEEHLAVREAAGLFDVSHMGKVEVSGPDAAAFLQRLLTNDVSKL 81 (379)
T ss_pred CccccccchHHHHHhcCCEEEeeCCEecceecCccHHHHHHHHHhcCceEeccCceEEEEECCCHHHHHHHHcccccCcC
Confidence 47899999999999999999999999999999955999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEE-EeCCeEEEEEeCCCh
Q 015320 114 APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWH-IHDERSLLALQGPLA 192 (409)
Q Consensus 114 ~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~-~~~~~~~l~l~GP~a 192 (409)
++|+++||+|||++|+|++|++|+|++||+|+|++++.+.+.+++||++++.. .+.+|++. .+++++.|+||||+|
T Consensus 82 ~~Gr~~Yt~~lne~G~v~dD~~v~rl~~d~f~lv~~a~~~~~~~~~l~~~~~~---~~~~v~~~~~t~~~~~lalqGPkA 158 (379)
T COG0404 82 KPGRARYTLMLNEDGGIIDDLIVYRLGEDRFFLVTNAATAEKDLAWLERHQAG---PDLDVTLTSVTEDLAVLALQGPKA 158 (379)
T ss_pred CCCcEEEeeeECCCCCEEeeEEEEEecCCeEEEEeCccchHHHHHHHHHhhcc---CCcceEEeeccccEEEEEEECcCH
Confidence 99999999999999999999999999999999999999999999999985432 14688885 468999999999999
Q ss_pred HHHHhccccCC-CCCCCCceeEEEEECCe-eEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhcc-CCCceEecccchhh
Q 015320 193 APVLQHLTKDD-LSKLYFGEFRILDINGV-SCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS-EGKVRLTGLGARDS 269 (409)
Q Consensus 193 ~~vL~~l~~~~-l~~l~~~~~~~~~i~g~-~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag-~~~~~~~G~~a~~~ 269 (409)
+++|+++...+ ..+|||++++++.+.+. +++++|+|||||+||||++|++++..+|++|+++| ++|+.|+|+.|+++
T Consensus 159 r~il~~~~~~~~~~~l~~~~~~~~~i~g~~~~~i~R~gyTGE~G~Ei~~p~~~a~~vw~aL~~aG~~~g~~P~Gl~A~dt 238 (379)
T COG0404 159 REVLAKLVDGDLVEALPFFAFKEVTIGGGVPVRISRTGYTGELGFEIYVPAEDAAAVWDALLEAGEKFGVKPCGLGARDT 238 (379)
T ss_pred HHHHHHhccccccccCCceEEEEEEecCCceEEEEeccccCCCeEEEEecHHHHHHHHHHHHHhhhhcCceEeecchhhH
Confidence 99999998877 48899999999999887 79999999999999999999999999999999998 78999999999999
Q ss_pred hhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCC--CCCCCCCeEecCCC
Q 015320 270 LRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG--PPARSHSKVHDEQG 347 (409)
Q Consensus 270 lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~--~~~~~g~~v~~~~g 347 (409)
||||+|++++|+|+++.++|+|+||+|+|+++| .+|+|++++++++.+|++|++|+|.+++ +.+.+|++|+..+|
T Consensus 239 LRlE~g~~l~g~d~~~~~~P~eagl~~~v~~~k---~dFiGk~al~~~k~~g~~r~lVgl~~~~~~~~~~~g~~v~~~~g 315 (379)
T COG0404 239 LRLEAGLRLYGQDLDETITPLEAGLGWAVKLDK---DDFIGKAALLREKAKGVRRKLVGLKLDDKGPVLRGGEPVLDADG 315 (379)
T ss_pred hhhhcCccccccccCCCCCHhhcCcceEecCCC---cCCcCHHHHHhhhhcCCceEEEEEEEcCCCCCCCCCCeEEecCC
Confidence 999999999999999999999999999999999 5899999999999999877799999975 35789999985577
Q ss_pred c-EeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCCCCCC
Q 015320 348 N-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 408 (409)
Q Consensus 348 ~-~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~~ 408 (409)
+ .||+|||++|||++|++||||||+.+++..|+++.|++++++++|+|+.+||++|++.|+
T Consensus 316 ~~~vG~VTSg~~Sptlg~~IAla~v~~~~~~~G~~~~v~i~~~~~~a~V~~~pf~dp~~~r~ 377 (379)
T COG0404 316 EVEVGEVTSGTFSPTLGKSIALAYVDSDYAKPGTELEVEIRGKRVPARVVKPPFYDPEGERL 377 (379)
T ss_pred CEeEEEEeeccccccCCCeeEEEEechhhccCCcEEEEEECCeEEEEEEecCCCcCcccccc
Confidence 7 599999999999999999999999999999999999999999999999999999999886
No 3
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=100.00 E-value=1.3e-83 Score=643.36 Aligned_cols=365 Identities=48% Similarity=0.827 Sum_probs=341.0
Q ss_pred CCCcccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCC
Q 015320 32 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVA 111 (409)
Q Consensus 32 ~~~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~ 111 (409)
.++||+|+||||++|+++||+|.+++||++|.||+.++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++||||+
T Consensus 4 ~~~~~~r~~pl~~~~~~~ga~~~~~~g~e~p~~f~~~~~~E~~avr~~a~l~Dls~~~~i~v~G~Da~~fLq~~~tndi~ 83 (370)
T PRK13579 4 DDTSPLKTLPLHALHLAAGARMVPFAGYDMPVQYPAGVLKEHLHTRAHAGLFDVSHMGQIEVSGKDAAAALERLVPVDIL 83 (370)
T ss_pred CCCCccccCccHHHHHHCCCEEEEECCeecccccCccHHHHHHHHHhccEEEECCCcEEEEEECCCHHHHHHHhccccCC
Confidence 46799999999999999999999999999999996459999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEeCCC
Q 015320 112 GLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPL 191 (409)
Q Consensus 112 ~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~ 191 (409)
++++|+++|+++||+||+|++|++|+|+ +|+|||+++++..+.+++||++++. .||+|++.++.++++|+||+
T Consensus 84 ~l~~g~~~y~~~ln~~G~i~~d~~v~r~-~d~~~L~~~~~~~~~~~~~l~~~~~------~~V~i~d~~~~~~l~l~GP~ 156 (370)
T PRK13579 84 ALKEGRQRYTFFTNEQGGILDDLMVTNL-GDHLFLVVNAACKDADIAHLREHLS------DECEVNPLDDRALLALQGPE 156 (370)
T ss_pred CCCCCCEEEeEEECCCCeEEEeEEEEEE-CCeEEEEECcCCHHHHHHHHHHhCC------CCcEEEECCCcEEEEEECcC
Confidence 9999999999999999999999999999 6899999999999999999999864 38999765578999999999
Q ss_pred hHHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhccCCCceEecccchhhhh
Q 015320 192 AAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLR 271 (409)
Q Consensus 192 a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lR 271 (409)
|+++|++++ .+++.++|++++.+.+++.+++++|++|+||+||||++|.+.+.++|+.|+++ .++.++|..+|+++|
T Consensus 157 a~~il~~l~-~~~~~~~~~~~~~~~~~g~~~~i~R~~~~Ge~G~el~~~~~~~~~l~~~l~~~--~g~~~~G~~a~~~lR 233 (370)
T PRK13579 157 AEAVLADLG-PPVAALRFMDGFEPRLHGVDCFVSRSGYTGEDGFEISVPADAAEALAEALLAD--PRVEPIGLGARDSLR 233 (370)
T ss_pred HHHHHHHhh-hhhhcCCCceEEEEEECCeEEEEEEeeecCCCEEEEEEcHHHHHHHHHHHHcc--CCceEechhhhhHHH
Confidence 999999987 46778999999999999999999999999999999999999999999999987 478999999999999
Q ss_pred hhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCCC-CCCCCCeEecCC-CcE
Q 015320 272 LEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGP-PARSHSKVHDEQ-GNP 349 (409)
Q Consensus 272 iE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~~-~~~~g~~v~~~~-g~~ 349 (409)
||+|+|.+|+|++++++|+|+||+|+|++.|.++|||+|||+++|++++|+.||++++.+++. ++.+|++|+ .+ |++
T Consensus 234 iE~G~p~~g~dl~~~~~P~E~gL~~~v~~~~~~KgcyiGqEalar~~~~G~~kr~v~l~~~~~~~~~~g~~v~-~~~g~~ 312 (370)
T PRK13579 234 LEAGLCLYGHDIDTTTTPVEAALEWAIQKARREAGGFPGAKAILAALAKGASRRRVGLKPEGRAPVREGAPLF-DDAGTE 312 (370)
T ss_pred hhcCCcccCCcCCCCCCHHHCCccceecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCccCCCCCCEEE-cCCCce
Confidence 999999999999999999999999998875433499999999999999999999999999763 466899999 55 699
Q ss_pred eEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCCCCC
Q 015320 350 IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 407 (409)
Q Consensus 350 vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~ 407 (409)
||+|||++|||.++++||||||+.+++++|+.|+|++.|++++|+|+.+||+++.|+|
T Consensus 313 VG~VtS~~~sp~l~~~iala~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~~~~~~~ 370 (370)
T PRK13579 313 IGTVTSGGFGPSVGGPVAMGYVPASLAAPGTAVFAEVRGKRLPVTVHALPFVPHRYKR 370 (370)
T ss_pred EEEEeecCcchhcCCeEEEEEEChhhcCCCCEEEEEECCEEEEEEEEcCCcccCCccC
Confidence 9999999999999999999999999989999999999999999999999999999886
No 4
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=100.00 E-value=3.9e-79 Score=609.49 Aligned_cols=355 Identities=25% Similarity=0.401 Sum_probs=322.9
Q ss_pred CcccccCcchHHHHHCCCeE-eecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCC
Q 015320 34 AENLKKTALHDFHVANGGKM-VPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAG 112 (409)
Q Consensus 34 ~~~~r~tpl~~~~~~~Ga~~-~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~ 112 (409)
++.+|+||||++|+++||+| +.++||+||.||. ++.+||+|+|++|+|||+|++++|+|+||||.+|||+++||||++
T Consensus 8 ~~~~~~t~l~~~h~~~ga~~~~~~~g~~~p~~~~-~~~~E~~A~R~~~gl~D~S~~~~i~V~G~Da~~fL~~l~t~di~~ 86 (368)
T PRK12486 8 SRRLRRTPFSDGVEAAGVKAYTVYNHMLLPTVFE-SVEDDYAHLKEHVQVWDVAVERQVEIRGPDAARLVQMLTPRDLRG 86 (368)
T ss_pred CccccCCCCHHHHHHCCCeEEecCCCeECccccC-CHHHHHHHHHhcceEEEcCCcEEEEEECCCHHHHHHHhccccccc
Confidence 46789999999999999995 5899999999999 699999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEeCCCh
Q 015320 113 LAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 192 (409)
Q Consensus 113 l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~a 192 (409)
+++|+++||++||++|+|++|++|+|+++|+|+|+++.+ ....||++++... +.+|++.. ++++.++||||+|
T Consensus 87 l~~G~~~yt~~ln~~G~i~~D~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~~---~~~v~~~~-~~~~~l~lqGP~s 159 (368)
T PRK12486 87 MKPGQCYYVPIVDETGGMLNDPVALKLAEDRWWISIADS---DLLLWVKGLANGR---KLDVLVVE-PDVSPLAVQGPKA 159 (368)
T ss_pred CCCCcEEEEEEEcCCCcEEeeEEEEEecCCEEEEEEcCc---cHHHHHHHhhhhc---CCcEEEec-CCeEEEEeECcCH
Confidence 999999999999999999999999999999999988654 4688898876532 23565543 5689999999999
Q ss_pred HHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecc-cHHHHHHHHHhcc-CCCceEecccchhhh
Q 015320 193 APVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSE-RAVDLAKAILEKS-EGKVRLTGLGARDSL 270 (409)
Q Consensus 193 ~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~-~a~~l~~~L~~ag-~~~~~~~G~~a~~~l 270 (409)
+++|+++++.+++++||++++.+.++|.+++++|+||+||+||||+++++ .+.++|+.|+++| .+++.++|..++ +
T Consensus 160 ~~il~~l~~~~l~~~~~~~~~~~~i~g~~~~i~R~g~tGE~G~Ei~~~~~~~a~~l~~~L~~aG~~~~~~~~~~~~~--~ 237 (368)
T PRK12486 160 DALMARVFGEAIRDLRFFRFGYFDFEGTDLVIARSGYSKQGGFEIYVEGSDLGMPLWDALFEAGKDLNVRAGCPNLI--E 237 (368)
T ss_pred HHHHHHHhcCChhhCCCceeEEEEECCcEEEEEeccccCCceEEEEeccHHHHHHHHHHHHhcccccCcccccChhH--h
Confidence 99999998878889999999999999999999999999999999999886 6899999999998 577888886544 6
Q ss_pred hhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCCC-CCCC--CCeEecCCC
Q 015320 271 RLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGP-PARS--HSKVHDEQG 347 (409)
Q Consensus 271 RiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~~-~~~~--g~~v~~~~g 347 (409)
|||+|+|.||+|++++++|+|+||+|+|+|+|+ .||+|||+++|++++|++|||++|.+++. .+.. +++|+ .+|
T Consensus 238 RlE~G~~~~g~D~~~~~~P~EagL~~~v~~~k~--~~FiGkeal~r~~~~g~~rrlvgl~~~~~~~~~~~~~~~V~-~~g 314 (368)
T PRK12486 238 RIEGGLLSYGNDMTRDNTPHECGLGRFCNTQTD--IGCIGKDALLRVAKEGPQKQIRGIKIGGERIPPCDRAWPLL-AGD 314 (368)
T ss_pred HHhcccccccccCCCCCChHHCCCceEEcCCCC--CCCcCHHHHHHHHhcCCCeEEEEEEECCCCCCCcCCceEEe-eCC
Confidence 999999999999999999999999999999993 39999999999988899999999999864 3332 36788 799
Q ss_pred cEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCc
Q 015320 348 NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 401 (409)
Q Consensus 348 ~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~ 401 (409)
+.||+|||++|||+++++||||||+.+++.+|+.|+|++.|+.++|+|+.+||+
T Consensus 315 ~~VG~vTS~~~sp~l~~~Iala~v~~~~~~~g~~l~v~~~~~~~~a~v~~~Pf~ 368 (368)
T PRK12486 315 NRVGQVTSAAYSPDFQTNVAIGMVRMTHWDPGTGLEVETPDGMRPATVREGFWI 368 (368)
T ss_pred eEEEEEeccCcCcccCceEEEEEEChhhcCCCCEEEEEECCceEEEEEeCCCCC
Confidence 999999999999999999999999998888999999999999999999999996
No 5
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-78 Score=566.95 Aligned_cols=394 Identities=58% Similarity=0.917 Sum_probs=363.0
Q ss_pred hHHHHhhhhhcchhhhhhhccCCCcccccCcchHHHHHCCCeEeecCCccccccccc-CHHHHHHHHHhCeEEEeCCCce
Q 015320 11 QSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKD-SIMESTLNCRQNGSLFDVSHMC 89 (409)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~-~~~~E~~a~r~~~~l~DlS~~~ 89 (409)
+++.+|++....|.. ++++.+..+++||||+.|.++|..|.+++||.||..|.+ ++.++|..+|++++|||+|||.
T Consensus 2 ~r~~~R~~~~~~~~~---~~~s~s~~~~~T~l~d~H~~~ggk~V~fag~smpvqy~d~s~~dshl~tr~n~~lfDVSHml 78 (401)
T KOG2770|consen 2 RRLGFRLALSILKRV---SASSASSELKRTPLYDFHVKLGGKMVPFAGYSMPVQYKDQSIIDSHLHTRENVSLFDVSHML 78 (401)
T ss_pred cccchhhhhhhhcee---eccchhhhcccCCChhhHhhcCCEEecccccccceeeccccchhhhhhhhhcceEEeehhhe
Confidence 467788887766554 455555568889999999999999999999999999986 7899999999999999999999
Q ss_pred eEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccC
Q 015320 90 GLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTA 169 (409)
Q Consensus 90 ~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~ 169 (409)
.++|+|+|+.+||+.++|.|+..|.+|+++.|.|.||+|+++||.+|.+..++++++++|+++.+.+...++.++..++.
T Consensus 79 q~~v~G~d~v~fLes~ttad~~~L~~g~GtlsvFtne~ggiiDd~ii~k~~~~~ly~VsnAgC~ekd~~~~k~~~~a~ks 158 (401)
T KOG2770|consen 79 QSRVSGKDRVAFLESLTTADFEGLPEGSGTLSVFTNETGGIIDDLIITKVDENELYIVSNAGCQEKDEALLKDHFFAWKS 158 (401)
T ss_pred eeeecccchhHHhhhccccchhccCCCCceeEEEEcCCCceeeeeEEEeecCCEEEEEeccchHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877755
Q ss_pred CCCCeEEEEeCCeEEEEEeCCChHHHHhcccc--CCCCCCCCceeEEEEECCee-EEEEeeCCCCCCeeEEEeecccHHH
Q 015320 170 KGGDVSWHIHDERSLLALQGPLAAPVLQHLTK--DDLSKLYFGEFRILDINGVS-CFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 170 ~~~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~--~~l~~l~~~~~~~~~i~g~~-~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.+.||+++..++.+.+++|||.+..+|+++.. .|++.+||+++....+.|.+ |++.|.|||||+|||+.++++.|..
T Consensus 159 ~gkDv~~~~~~~r~l~A~Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~~~G~~~~~vtr~gytgEDGfeisv~~~~Av~ 238 (401)
T KOG2770|consen 159 KGKDVSWETLDGRSLLALQGPEAAKVLQKLLSKLGDLSKLPFGQSQVYDFKGGPGCRVTRGGYTGEDGFEISVPPEGAVD 238 (401)
T ss_pred ccceeeEEEecccchhhhcChHHHHHHHHhhccccchhcccccceEEEEecCCCceEEeccccccCCceEEecCCchhHH
Confidence 67789988777889999999999999999987 78999999999999999888 9999999999999999999999999
Q ss_pred HHHHHHhccCCCceEecccchhhhhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcC-CCeE
Q 015320 247 LAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEG-PPVR 325 (409)
Q Consensus 247 l~~~L~~ag~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g-~~rr 325 (409)
+|+.|++. ..++|+|+.|||+||||+|+++||.|++++++|.|++|.|.|.-.+..+.||.|+|.|+++.+.+ ++||
T Consensus 239 la~~LLa~--~~vkp~Gl~ArDsLRLeaGKOGyg~did~~~tpvEa~L~W~i~krrR~~~~f~Ga~~I~~qLk~~~~~~R 316 (401)
T KOG2770|consen 239 LAETLLAN--PVVKPAGLGARDSLRLEAGLCLYGSDIDEETTPVEAGLSWVIGKRRRGTYDFPGAEVILKQLKDGGISRR 316 (401)
T ss_pred HHHHHhhC--CceeecccchhhhhhhhcCCcccCcccccccChhhheeeeeeeeccccccCCCcHHHHHHHhhcCCcceE
Confidence 99999997 36899999999999999999999999999999999999997654443335999999999998766 7999
Q ss_pred EEEEEeCC-CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCC
Q 015320 326 RVGFFAGG-PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 404 (409)
Q Consensus 326 lv~l~~~~-~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~ 404 (409)
+|+|.+.+ +++++|.+|++.+|+.||+|||++.||+++++||+|||+..+..+|+.+.|.++++.++++|+.+||++.+
T Consensus 317 rvGl~~~~~p~ar~gs~I~~~~g~kVG~vTSg~~sptl~kniamgYV~k~~~~~Gtkv~v~vr~k~~~~~VskmPfV~t~ 396 (401)
T KOG2770|consen 317 RVGLNLSAKPPARSGSAIFVDDGTKVGQVTSGCPSPTLGKNIAMGYVKKGYHKIGTKVLVKVRNKLYPAEVSKMPFVPTN 396 (401)
T ss_pred EEeeeccCCCCCCCCCeeEcCCCceEeeEccCCCCCCcccceeEEEeeccccCCCCEEEEEecCcccceEEEeccccccc
Confidence 99998877 66889999995558999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 015320 405 YYKPS 409 (409)
Q Consensus 405 ~~~~~ 409 (409)
||+++
T Consensus 397 yy~~~ 401 (401)
T KOG2770|consen 397 YYKSA 401 (401)
T ss_pred CCCCC
Confidence 99974
No 6
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=100.00 E-value=3.7e-77 Score=595.58 Aligned_cols=353 Identities=45% Similarity=0.716 Sum_probs=332.2
Q ss_pred cccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCC
Q 015320 37 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPG 116 (409)
Q Consensus 37 ~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g 116 (409)
+|+||||++|.+.||.|.+++||++|.||+ ++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++||||+.+++|
T Consensus 2 ~r~s~l~~~~~~~ga~f~~~~g~~~p~~~~-~~~~E~~a~r~~~~l~dls~~~~i~v~G~Da~~fLq~~~t~dv~~l~~g 80 (359)
T PRK00389 2 LKRTPLYDLHVALGAKMVDFGGWEMPVQYG-SIIEEHHAVRTDAGLFDVSHMGEVDVTGPDALAFLQYLLANDVSKLKPG 80 (359)
T ss_pred CcCCccHHHHHHcCCEEEeECCeecchhcc-CHHHHHHHHHhCceEEECCCcEEEEEECCCHHHHHhhhcccccccCCCC
Confidence 689999999999999999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEE-eCCeEEEEEeCCChHHH
Q 015320 117 TGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI-HDERSLLALQGPLAAPV 195 (409)
Q Consensus 117 ~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~-~~~~~~l~l~GP~a~~v 195 (409)
+++|+++||+||+|++|++|+|+++|+|+|+++++..+.+++||++|+.. .+|+|++ ++++++++|+||+|.++
T Consensus 81 ~~~~~~~l~~~G~i~~d~~v~r~~~~~~ll~~~~~~~~~~~~~L~~~~~~-----~~V~i~d~~~~~~~l~l~GP~a~~~ 155 (359)
T PRK00389 81 KAQYTCMLNEDGGVIDDLIVYKLSEDEYLLVVNAANREKDLAWIKSHAAG-----FGVEVTDRSDDLAMIAVQGPKAREK 155 (359)
T ss_pred cEEEeEEECCCCCEEEeEEEEEecCCEEEEEECcccHHHHHHHHHhhCcc-----CCEEEEECCCCEEEEEEECccHHHH
Confidence 99999999999999999999999889999999999999999999999863 5899965 67799999999999999
Q ss_pred HhccccCCCCCC-CCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhccCCCceEecccchhhhhhhc
Q 015320 196 LQHLTKDDLSKL-YFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEA 274 (409)
Q Consensus 196 L~~l~~~~l~~l-~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~ 274 (409)
|++++..+++.+ ||..+....+++.++++.|++++|++|||++++.+.+.++|+.|+++ |+.++|..+|+++|||+
T Consensus 156 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~L~~a---g~~~~g~~a~~~lrie~ 232 (359)
T PRK00389 156 LQKLTDADLSELKPFFGAQGAEVGGGDVLVARTGYTGEDGFEIYLPAEDAEALWDALLEA---GVKPCGLGARDTLRLEA 232 (359)
T ss_pred HHHhcccchhhccccceeeEEEECCeEEEEEeceecCCCeEEEEEchHHHHHHHHHHHHc---CCeecchhHHhHHHHhc
Confidence 999987777777 77777777788888999999999999999999999999999999997 69999999999999999
Q ss_pred ccccccCCCCCCCCccccccccccccc-cCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCC-CCCCCCCeEecCCCcEeEE
Q 015320 275 GLCLYGNDMEQHVTPVEAGLTWAIGKR-RRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG-PPARSHSKVHDEQGNPIGE 352 (409)
Q Consensus 275 G~p~~g~d~~~~~~P~E~gl~~~V~f~-K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~-~~~~~g~~v~~~~g~~vG~ 352 (409)
|+|.++.|+++.++|+|+||+|+|||+ | |||+|||+|+|++++|++|||+++.+++ ..|.+|++|+ .+|+.||.
T Consensus 233 G~p~~~~d~~~~~~P~e~gl~~~v~~~~K---gcy~GqE~var~~~~g~krrlv~l~~~~~~~~~~g~~v~-~~g~~vG~ 308 (359)
T PRK00389 233 GMPLYGQDMDETITPLEAGLGWTVKLEEK---RDFIGREALEAQKEAGVERKLVGLELEERGIPRHGYPVL-ADGEEIGE 308 (359)
T ss_pred CCCccCccCCCCCChHHcCcccEecCCCC---CCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEe-eCCcEEEE
Confidence 999999999999999999999999999 5 9999999999999999999999999964 5677899997 78999999
Q ss_pred EEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCCC
Q 015320 353 ITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKY 405 (409)
Q Consensus 353 vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~ 405 (409)
|||++|||.++++||||+|++++ |+.++|++.|++++|+|+.+||+++.+
T Consensus 309 vts~~~s~~~~~~iala~l~~~~---g~~~~v~~~~~~~~a~v~~~p~~~~~~ 358 (359)
T PRK00389 309 VTSGTFSPTLGKSIALAYVPAGV---GDEVEVEIRGKQVPAKVVKPPFVRRGK 358 (359)
T ss_pred EeccCcccccCceEEEEEecCCC---CCEEEEEECCeEEEEEEecCCCcCCCC
Confidence 99999999999999999999875 889999999999999999999999763
No 7
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=100.00 E-value=4.1e-77 Score=595.32 Aligned_cols=356 Identities=42% Similarity=0.675 Sum_probs=329.1
Q ss_pred cccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCC
Q 015320 37 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPG 116 (409)
Q Consensus 37 ~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g 116 (409)
+|+||||++|.++||+|.+++||++|.+|+ ++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++||||+.+++|
T Consensus 1 ~r~spl~~~~~~~ga~~~~~~g~~~p~~y~-~~~~E~~a~r~~~~l~dls~~~~i~vsG~Da~~fLq~~~t~di~~l~~g 79 (361)
T TIGR00528 1 LKRTPLYDLHTECGGKMVDFGGWEMPVQYG-SQIDEHHAVRTDAGLFDVSHMGIVDLSGSRSLEFLQRLLPNDVAALTPG 79 (361)
T ss_pred CCCCcchHHHHHCCCEEEEECCchhhhccC-ChHHHHHHHHhhCcEEECCCcEEEEEECCCHHHHHhHhcccccccCCCC
Confidence 489999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEE-eCCeEEEEEeCCChHHH
Q 015320 117 TGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI-HDERSLLALQGPLAAPV 195 (409)
Q Consensus 117 ~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~-~~~~~~l~l~GP~a~~v 195 (409)
++.|+++||+||+|++|++|+|+++|+|||+++++..+.+++||++|+. .+|+|++ ++++++++|+||+|+++
T Consensus 80 ~~~~~~~l~~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~------~~v~i~~~t~~~~~l~l~GP~a~~~ 153 (361)
T TIGR00528 80 KAQYSVLLNPQGGVVDDLIIYYFGEDRFRLVVNAATREKDLSWITEHAE------PFGIEDTQSDDISLLAVQGPKAATI 153 (361)
T ss_pred CEEEEEEECCCCeEEEEEEEEEecCCEEEEEECCccHHHHHHHHHHhCc------CCcEEEECcCCEEEEEeECcCHHHH
Confidence 9999999999999999999999988999999999999999999999953 3789954 77899999999999999
Q ss_pred HhccccCCCCCCC-CceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhccCCCceEecccchhhhhhhc
Q 015320 196 LQHLTKDDLSKLY-FGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEA 274 (409)
Q Consensus 196 L~~l~~~~l~~l~-~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~ 274 (409)
|+++...++..++ |.......+++.+++++|++++||+||||+++++.+.++|+.|++++ |+.++|..+|+++|||+
T Consensus 154 l~~l~~~~~~~~~~~~~~~~~~~~g~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~l~~~g--g~~~~g~~a~~~lRie~ 231 (361)
T TIGR00528 154 LNPLQDQAVEGLKPFFFVQEADFSGRKAFIARTGYTGEDGYEIALPNEKAADFWRALVEAY--GVKPCGLGARDTLRLEA 231 (361)
T ss_pred HHHhcccchhhcccccceeEEEECCceEEEEEcceeCCCeEEEEecHHHHHHHHHHHHhcC--CcEEcchhhhhhhHhhc
Confidence 9999876666654 44456788889889999999999999999999999999999999984 78999999999999999
Q ss_pred ccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCC-CCCCCCCeEecCCC-cEeEE
Q 015320 275 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG-PPARSHSKVHDEQG-NPIGE 352 (409)
Q Consensus 275 G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~-~~~~~g~~v~~~~g-~~vG~ 352 (409)
|+|.++.|++++++|+|+||+|+|+|+++ +|||+|||+++|++++|.+||++++.+++ ..+..|++|+..+| ++||.
T Consensus 232 G~p~~~~d~~~~~~P~E~gl~~~v~~~fk-Kgcy~GqE~lar~~~~G~~krlv~l~~~~~~~~~~g~~v~~~~g~~~vG~ 310 (361)
T TIGR00528 232 GMNLYGQELDETITPLEAGLGWTIAWEPA-KRDFIGRAVLEEQKENGTEKKLVGLEMLEKGIARNGYPVFFTNGNQHVGI 310 (361)
T ss_pred CCCccCccCCCCCChHHCCcccEEecCCC-CCCCcCHHHHHhHHhcCCCeEEEEEEECCCcCCCCCCEEEeCCCCeeEEE
Confidence 99999999999999999999999888721 29999999999999999999999999864 46678999983255 99999
Q ss_pred EEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcC
Q 015320 353 ITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 402 (409)
Q Consensus 353 vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~ 402 (409)
|||++|||.++++||||||+.+++.+|+.|+|++.|++++|+|+.+||++
T Consensus 311 vtS~~~s~~~g~~iala~v~~~~~~~g~~~~v~~~g~~~~a~v~~~p~~~ 360 (361)
T TIGR00528 311 VTSGTFSPTLGKNIGLAYVPSETEKIGTTLIVQIRNKEYPIKVVKPPFVR 360 (361)
T ss_pred EeecCcchhcCceEEEEEEChhhcCCCCEEEEEECCeEEEEEEecCCCcC
Confidence 99999999999999999999999999999999999999999999999985
No 8
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=9.5e-76 Score=649.35 Aligned_cols=369 Identities=25% Similarity=0.427 Sum_probs=342.6
Q ss_pred cccccCcchHHHHHCCCeEeecCCcccccccc-------cCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhccc
Q 015320 35 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYK-------DSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVI 107 (409)
Q Consensus 35 ~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~-------~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t 107 (409)
+|+|+||||++|.++||+|.+++||++|.||. +++.+||+|+|++|+|||+|++++|+|+|+||.+|||+++|
T Consensus 594 ~~~r~tpl~~~~~~~GA~~~~~~gw~~p~~y~~~~~~~~~~~~~E~~avR~~vgl~D~S~~g~i~V~G~DA~~fL~~~~t 673 (985)
T TIGR01372 594 DPARKTPLHSWHLAHGAVFEDVGQWKRPWYYPRRGEDMDEAVARECKAVRESVGLFDASTLGKIEVQGPDAAEFLNRVYT 673 (985)
T ss_pred cccccCccHHHHHHcCCEeeeeCCccchhhhcCCCCcccchHHHHHHHHHhceEEEECCCcEEEEEECcCHHHHHhhhcc
Confidence 48999999999999999999999999999996 25899999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhh-ccCCCCCeEEE-EeCCeEEE
Q 015320 108 ADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKS-FTAKGGDVSWH-IHDERSLL 185 (409)
Q Consensus 108 ~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~-~~~~~~~V~i~-~~~~~~~l 185 (409)
|||+++++|+++|++|||++|+|++|++|+|+++|+|+|+++++..+.+++||++|+.. + ...+|+|. .+++++.|
T Consensus 674 ndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r~~ed~~~l~~~~~~~~~~~~~L~~~~~~~~--~~~~V~i~d~t~~~a~i 751 (985)
T TIGR01372 674 NAFTKLKVGKARYGLMLREDGMVFDDGVTSRLAEDRFLMTTTTGGAARVLQHLEEWLQTEW--PELDVYLTSVTDQWATL 751 (985)
T ss_pred cccCcCCCCCEEEeEEECCCCeEEEeEEEEEEeCCEEEEEeCCcCHHHHHHHHHHhhhhcc--CCCCEEEEECCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999752 1 12579995 47889999
Q ss_pred EEeCCChHHHHhcccc-CCC--CCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhcc-CCCceE
Q 015320 186 ALQGPLAAPVLQHLTK-DDL--SKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS-EGKVRL 261 (409)
Q Consensus 186 ~l~GP~a~~vL~~l~~-~~l--~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag-~~~~~~ 261 (409)
+|+||+|+++|++++. .++ +.+||+.+..+.+++.+++++|++|+||+||||++|.+++.+||+.|+++| +++++|
T Consensus 752 ~l~GP~s~~vl~~l~~~~dl~~~~~~~~~~~~~~~~g~~~~i~R~~~tGE~GyEi~~p~~~~~~l~~~L~~aG~~~g~~p 831 (985)
T TIGR01372 752 AVSGPKARDLLAELVDGLDLSNEAFPFMAIKEGTLAGVPARLFRISFSGELAFEVNVPADYGEAVWEALMEAGQPFGITP 831 (985)
T ss_pred EEECHhHHHHHHHhcCcccCccccCCCceeEEEEECCcEEEEEeccccCCceEEEEecHHHHHHHHHHHHhcchhcCceE
Confidence 9999999999999975 455 458999999999999999999999999999999999999999999999998 789999
Q ss_pred ecccchhhhhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcC-CCeEEEEEEeCCC--CCCC
Q 015320 262 TGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEG-PPVRRVGFFAGGP--PARS 338 (409)
Q Consensus 262 ~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g-~~rrlv~l~~~~~--~~~~ 338 (409)
+|+.+|++||||+|+|.+|+|++++++|+|+||+|+|||+| |||+|||+++|++++| ++|||++|.+++. .+++
T Consensus 832 ~G~~a~~~lRiE~G~~~~g~d~~~~~tP~E~gl~~~V~~~K---g~fiGqeal~r~~~~~~~krrlvgl~~~~~~~~~~~ 908 (985)
T TIGR01372 832 YGTETMHVLRAEKGFIIVGQDTDGTVTPADLGMGWMVSKKK---PDFVGRRMLAREDLVAEDRKQLVGLLPLDPQRRLPE 908 (985)
T ss_pred cchhhhhhhhhhcCccccCcccCCCCCHHHCCCcccccCCC---CCcCCHHHHHhHHhcCCCceEEEEEEEeCCCCCCCC
Confidence 99999999999999999999999999999999999999999 8999999999998865 6999999998653 5678
Q ss_pred CCeEecCC-----CcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCCCCCC
Q 015320 339 HSKVHDEQ-----GNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 408 (409)
Q Consensus 339 g~~v~~~~-----g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~~ 408 (409)
|++++..+ ++.||.|||++|||+++++||||||+.+++.+|+.|+|++.|+.++|+|++.|||+|+..|.
T Consensus 909 g~~v~~~~~~~~~~~~vG~VTS~~~sp~lg~~iaLa~v~~~~~~~G~~v~v~~~g~~~~a~v~~~pf~dp~~~r~ 983 (985)
T TIGR01372 909 GAHIVADDAEAIPMNMQGHVTSSYFSPALGRTIALALVKGGRARHGETVYVPDLGRFIAVEICDPVFFDPEGTRL 983 (985)
T ss_pred CCEEEECCCcccCCCcEEEEeeeccchhcCCeEEEEEECccccCCCCEEEEEECCEEEEEEEeccCCCCCCCCCc
Confidence 99887333 47999999999999999999999999998889999999999999999999999999998774
No 9
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-70 Score=548.73 Aligned_cols=363 Identities=27% Similarity=0.438 Sum_probs=340.0
Q ss_pred cccccCcchHHHHHCCCeEeecCCcccccccc-----------------------cCHHHHHHHHHhCeEEEeCCCceeE
Q 015320 35 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYK-----------------------DSIMESTLNCRQNGSLFDVSHMCGL 91 (409)
Q Consensus 35 ~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~-----------------------~~~~~E~~a~r~~~~l~DlS~~~~l 91 (409)
|++|++|||+.+.+.||+|++..|||+|.||. +.+..||+|||+.++++|+|.|+++
T Consensus 450 RnlR~sply~~L~~aGav~~e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf 529 (856)
T KOG2844|consen 450 RNLRMSPLYDRLESAGAVFGEKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKF 529 (856)
T ss_pred cccccCccHHHHHhcccchhhhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeecccccee
Confidence 79999999999999999999999999999994 3478899999999999999999999
Q ss_pred EEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCC
Q 015320 92 SLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKG 171 (409)
Q Consensus 92 ~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~ 171 (409)
.|.|+||.+.||+++++|++. ++|...||+|||++|++.+|++|.|+++.+|+|+.+...+.+.+.||++++... +
T Consensus 530 ~i~G~da~e~ld~LfSanv~~-~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~---~ 605 (856)
T KOG2844|consen 530 DITGQDAVELLDYLFSANVDV-PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKG---G 605 (856)
T ss_pred eeccHHHHHHHHHHhhcCCCC-CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhcc---C
Confidence 999999999999999999997 899999999999999999999999999999999999999999999999998753 5
Q ss_pred CCeEEE-EeCCeEEEEEeCCChHHHHhccccCCCCC--CCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHH
Q 015320 172 GDVSWH-IHDERSLLALQGPLAAPVLQHLTKDDLSK--LYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLA 248 (409)
Q Consensus 172 ~~V~i~-~~~~~~~l~l~GP~a~~vL~~l~~~~l~~--l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~ 248 (409)
.+|.+. +++++.+|+|+||.|+.+|+++++.|+++ +||.++++..++++.++++|.+++||+||||++|.+++..+|
T Consensus 606 ~~v~l~DvT~~~~~l~i~GP~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip~e~~~~vY 685 (856)
T KOG2844|consen 606 SNVELKDVTDELGALSIIGPQSRKVLQELTDADLSDDHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIPNEDAVAVY 685 (856)
T ss_pred CceeeeechhhhceeeecCchHHHHHHhccCCCCCccccCcceeeeeeccccceEEEEEEeccccceEEEechHHHHHHH
Confidence 799994 58899999999999999999999998865 899999999999999999999999999999999999999999
Q ss_pred HHHHhcc-CCCceEecccchhhhhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEE
Q 015320 249 KAILEKS-EGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRV 327 (409)
Q Consensus 249 ~~L~~ag-~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv 327 (409)
++|++|| +++++.+|+.++++||||+++..||+|++..+||+|+|+.|.|+|+|+ -+|||++|++.++.+|++||||
T Consensus 686 ~~im~AG~~~~l~naGyya~~aLriEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k~p--~dFiGk~ALeqqra~GlkkrlV 763 (856)
T KOG2844|consen 686 RAIMNAGQEEGLQNAGYYALRALRIEKFYRAWGQDLNPDTTPLEAGLEFRVKLKKP--ADFIGKQALEQQKAEGLKKRLV 763 (856)
T ss_pred HHHHhhhhhhccccchhHHHHHHHHHHHHHhhccccCCCCChhhccceeEEecCCC--ccchhHHHHHHHHHhhhhheEE
Confidence 9999999 899999999999999999999999999999999999999999999997 5899999999999999999999
Q ss_pred EEEeCC--CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCC--------ccCCCCEEEEEECCeEEeEEEE-
Q 015320 328 GFFAGG--PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSG--------LHKAGTKVKIEVRGKAYDGNIT- 396 (409)
Q Consensus 328 ~l~~~~--~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~--------~~~~g~~l~v~~~g~~~~a~v~- 396 (409)
.|++++ +.|..|++|+ +||+.||.+||++|+++++|.++++||+.. +-..| .++|++.|++++|++.
T Consensus 764 ~l~l~d~d~~~~G~E~I~-rnG~~VG~ttsa~Y~ytl~k~v~~gyV~n~~e~~V~~d~V~sg-~yEvdi~Gkry~a~~~l 841 (856)
T KOG2844|consen 764 CLTLDDHDPDPWGGEPIY-RNGQVVGNTTSAAYGYTLGKSVCLGYVHNFEEFPVSLDFVGSG-EYEVDIAGKRYPAKANL 841 (856)
T ss_pred EEEecCCCCCccCCccee-eCCEEEeeeeeccceeeecceEEEEEecccccCccCHHHhcCC-cEEEEecccccceeEEe
Confidence 999986 3478899999 999999999999999999999999999853 33333 6899999999999997
Q ss_pred cCCCcCCCC
Q 015320 397 KMPFVPTKY 405 (409)
Q Consensus 397 ~~Pf~~~~~ 405 (409)
..|+.+...
T Consensus 842 ~sP~~pt~~ 850 (856)
T KOG2844|consen 842 HSPSLPTEK 850 (856)
T ss_pred cCCCCCccc
Confidence 469988765
No 10
>PRK09559 putative global regulator; Reviewed
Probab=100.00 E-value=4.3e-51 Score=402.21 Aligned_cols=300 Identities=15% Similarity=0.148 Sum_probs=249.4
Q ss_pred eEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHH
Q 015320 80 GSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAH 159 (409)
Q Consensus 80 ~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~ 159 (409)
..++|+|++++|+|+|+||.+|||+|+||||++|++|+++|+++||+||||++|++|++.+ ++|+|+++++..+.+++|
T Consensus 19 ~~l~~L~~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~~-~~~~l~~~~~~~~~~~~~ 97 (327)
T PRK09559 19 LTLISLDDWALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRRG-DGFAWIERRSVRENQLTE 97 (327)
T ss_pred eEEEcCccceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEeC-CeEEEEeChhhhHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999985 569999999999999999
Q ss_pred HHHHHhhccCCCCCeEEEEeCCeEEEEEeCCChHHHHhccccC-CCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEE
Q 015320 160 IEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKD-DLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEIS 238 (409)
Q Consensus 160 L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~-~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~ 238 (409)
|++|+.. .+|+|+++++++.++++||+|.+++++++.. +...+++. .... +.+.|.+ ..+.|||++
T Consensus 98 L~ky~~~-----~kV~i~~~~~~~~i~l~Gp~a~~~l~~~~~~~~~~~~~~~-----~~~~--~~~~~~~-~~~~g~ei~ 164 (327)
T PRK09559 98 LKKYAVF-----SKVTIAPDDERVLLGVAGFQARAALANLFSELPDAEKPVV-----QEGA--TTLLWFE-HPAERFLLV 164 (327)
T ss_pred Hhhcccc-----eEEEEEeCCcEEEEEEECccHHHHHHHhcccCCCcCcceE-----ecCC--eEEEEec-CCCCeEEEE
Confidence 9999874 5899977777999999999999999887642 22333332 2122 2233433 256899999
Q ss_pred eecccHHHHHHHHHhccCCCceEecccchhhhhhhcccccccCCCCCCCCcccccccc--ccccccCcCCCCcCHHHHHh
Q 015320 239 VPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTW--AIGKRRRAEGGFLGAEKILK 316 (409)
Q Consensus 239 ~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~--~V~f~K~~~GcyiGqE~lar 316 (409)
++.+.+..+|+.|.+. ..+.+...|+.+|||+|+|.++.|+++.++|+|+||++ +|||+| |||+|||+|+|
T Consensus 165 ~~~~~~~~l~~~L~~~----~~~~~~~~w~~lrIeaG~p~~g~e~~e~~~Pqe~nL~~l~~Vsf~K---GCY~GQE~vAR 237 (327)
T PRK09559 165 TDEATANMLTEKLRGE----AQLNNSQQWLALDIEAGFPVIDAANSGQFIPQATNLQALGGISFKK---GCYTGQEMVAR 237 (327)
T ss_pred echHHHHHHHHHhhhc----CccCCHHHHHHHHHHcCCcccccccccccCchhhChhhcCceeecC---cccccHHHHHH
Confidence 9999999999999864 34567788999999999999999999999999999994 899999 99999999999
Q ss_pred hHhcCC-CeEEEEEEeCC-CCCCCCCeE--ecC-CCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEE
Q 015320 317 QLDEGP-PVRRVGFFAGG-PPARSHSKV--HDE-QGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAY 391 (409)
Q Consensus 317 ~~~~g~-~rrlv~l~~~~-~~~~~g~~v--~~~-~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~ 391 (409)
++++|. +|||+++.+++ ..|.+|++| ++. +++.||.|+|++.++. +...++++++.+. .+++.+.+.-.. ..
T Consensus 238 ~~~~G~~krrl~~l~~~~~~~~~~g~~i~~~~~~~~~~~G~v~s~~~~~~-~~~~~l~v~~~~~-~~~~~l~~~~~~-~~ 314 (327)
T PRK09559 238 AKFRGANKRALWWLAGKASRVPEAGEDLELKMGENWRRTGTVLAAVQLDD-GQVWVQVVMNNDL-EADSVFRVRDDA-GN 314 (327)
T ss_pred HHHcCCCceeEEEEecccccCCCCCCeeEEecCCCCceeEEEEEEEECCC-CCEEEEEEEecCc-CCCceEEEccCC-CC
Confidence 999996 88889999874 457889966 322 3689999999999877 6678888888775 456667774322 13
Q ss_pred eEEEEcCCCcCC
Q 015320 392 DGNITKMPFVPT 403 (409)
Q Consensus 392 ~a~v~~~Pf~~~ 403 (409)
..++.++||-.+
T Consensus 315 ~~~~~~lPy~~~ 326 (327)
T PRK09559 315 TLHIQPLPYSLE 326 (327)
T ss_pred eeEecCCCCCCC
Confidence 488889998654
No 11
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=100.00 E-value=4.9e-44 Score=331.06 Aligned_cols=209 Identities=39% Similarity=0.613 Sum_probs=189.2
Q ss_pred EEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHH
Q 015320 82 LFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIE 161 (409)
Q Consensus 82 l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~ 161 (409)
|||+|++++|+|+|+||.+|||+++||||+++++|+++|+++||+||+|++|++|+|.++++|+|+++++.++.+++||+
T Consensus 1 l~d~s~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~ 80 (211)
T PF01571_consen 1 LFDLSHRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRLGDDEFLLIVPASAADALLEWLK 80 (211)
T ss_dssp EEE-TTSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHH
T ss_pred CCCCCCcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEeecCceEEEEecchhHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHhhccCCCCCeEEEE-eCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEee
Q 015320 162 AHMKSFTAKGGDVSWHI-HDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVP 240 (409)
Q Consensus 162 ~~~~~~~~~~~~V~i~~-~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~ 240 (409)
+|+.. .||+|++ ++++++++|+||+|.++++++++.+++.++++++... +++ ++++.|.+++|++|||++++
T Consensus 81 ~~~~~-----~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~r~~~~g~~g~~l~~~ 153 (211)
T PF01571_consen 81 KYILR-----SDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFSSREV-GDG-PVLVARTGRTGELGYELIVP 153 (211)
T ss_dssp HHHHH-----SS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSGTTSHTTBEEEE-ETT-EEEEESCBSSSSSEEEEEEE
T ss_pred Hhccc-----cCcEEEEcccceeEEEEEcchhhHHHHHhcccccccccccceeee-cCc-eEEEEecccCCCCCEEEEec
Confidence 99875 5999976 5569999999999999999999777888999998888 888 99999999999999999999
Q ss_pred cccHHHHHHHHHhcc-CCCceEecccchhhhhhhcccccccCCCCCCCCccccccccc
Q 015320 241 SERAVDLAKAILEKS-EGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWA 297 (409)
Q Consensus 241 ~~~a~~l~~~L~~ag-~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~ 297 (409)
.+.+.++|+.|+++| +++++++|..+|+++|||+|+|.+++|+++.++|+|+||+|+
T Consensus 154 ~~~~~~~~~~l~~~g~~~g~~~~g~~~~~~lRie~G~p~~~~d~~~~~~P~E~~l~w~ 211 (211)
T PF01571_consen 154 AEEAEALWDALLEAGKDFGVRPAGLEAWEALRIEAGIPLYGQDLDEEFLPQEANLDWA 211 (211)
T ss_dssp GGGHHHHHHHHHHHHGGGTEEEEEHHHHHHHHHHTT---TTTSSCTTS-TTTTTGGGG
T ss_pred cchhHHHHHHHHHHHhccCceeccHHHHHHHHHhcCCcccccccCCCCCHHHcCCCcC
Confidence 999999999999997 688999999999999999999999999999999999999985
No 12
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=100.00 E-value=2e-40 Score=319.44 Aligned_cols=289 Identities=19% Similarity=0.224 Sum_probs=224.9
Q ss_pred HHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCc
Q 015320 74 LNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCR 153 (409)
Q Consensus 74 ~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~ 153 (409)
.+-.+...++++++++.|+|+|+|+.+|||+|+||||..|..|+.+|+++||+||||++++.+++.+ |.|+|.++++..
T Consensus 8 ~~~~~~~~l~~l~~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~~~-d~~~l~~~~~~~ 86 (305)
T COG0354 8 PSAETPLTLVLLSDRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYRRG-DGLYLDTDKSVL 86 (305)
T ss_pred cccccccEEEecCCceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEEeC-CeEEEEcchhhc
Confidence 3444667899999999999999999999999999999999999999999999999999999999985 889999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCC
Q 015320 154 DKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGED 233 (409)
Q Consensus 154 ~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~ 233 (409)
+..+++|++|+.. ++|+|...+ ..++++.|+++...+..... .+|..... ..
T Consensus 87 ~~~l~~L~kY~~~-----skv~i~~~~-~~~i~v~~~~~~~~~~~~~~----~~~~~~~~------------------~~ 138 (305)
T COG0354 87 EALLKRLKKYALR-----SKVTIAPSD-LVLIGVAGEEAAEALAVDFP----ALPKQWRA------------------AG 138 (305)
T ss_pred HHHHHHHHhceec-----ccceEecCC-ceeEEEeeccccchhhcccc----cccccccc------------------cc
Confidence 9999999999874 689997655 79999999998776655432 22221110 01
Q ss_pred eeEEEeecccHHHHHHHHHhccCCCceEecccchhhhhhhcccccccCCCCCCCCcccccccc--ccccccCcCCCCcCH
Q 015320 234 GFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTW--AIGKRRRAEGGFLGA 311 (409)
Q Consensus 234 G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~--~V~f~K~~~GcyiGq 311 (409)
.+++.++......++...... .....+..+|+.+||++|+|..+.++.+.++|+|+||+. +|||+| |||+||
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~w~~lri~~G~p~~~~~~~~~~iPqevnl~~~~gISF~K---GCYvGQ 212 (305)
T COG0354 139 RFLLDLPVPRLLQLVPKLALP---QALEASLDQWLALRIRAGIPGIDDATSEDFIPQEVNLDALGGISFKK---GCYVGQ 212 (305)
T ss_pred cceeccchhhhhhhhhhcccc---ccccccHHHHHHHHHHcCCCcccchhccccChhhhCccccCcEeccC---cccccH
Confidence 233334322232333222221 345667789999999999999999999999999999986 699999 999999
Q ss_pred HHHHhhHhcC-CCeEEEEEEeCCCCCCCCCeEecCCCcE--eEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECC
Q 015320 312 EKILKQLDEG-PPVRRVGFFAGGPPARSHSKVHDEQGNP--IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRG 388 (409)
Q Consensus 312 E~lar~~~~g-~~rrlv~l~~~~~~~~~g~~v~~~~g~~--vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g 388 (409)
|+++|++++| .+|||+.+.+++..|..|++|. .++++ +|.|+|..-. ..+++++++. ....+..+.+ .+
T Consensus 213 E~VAR~~~rG~~kRrl~~l~~d~~~p~~g~~i~-a~~~~~~~G~v~s~~~~----~~~~l~~l~~-~l~~~~~~~v--~~ 284 (305)
T COG0354 213 ETVARAKYRGTNKRRLVLLALDASLPEAGEEIL-AGGEEVGLGTVLSAVGL----GPVALIRLKV-VLDNGLAIDV--GG 284 (305)
T ss_pred HHhhHHHhcCCCceeEEEEEeCCCCCCCCCeee-cCCCcceeeeEEecccC----cchhHHHHHH-hhcccchhhh--cc
Confidence 9999999999 5888999999876788999998 78888 9999998632 2488888888 4444544433 22
Q ss_pred eEEeEEEEcCCCcCCCCCC
Q 015320 389 KAYDGNITKMPFVPTKYYK 407 (409)
Q Consensus 389 ~~~~a~v~~~Pf~~~~~~~ 407 (409)
..+.+..+|+....|.+
T Consensus 285 --~~~~~~~~~~~~~~~~~ 301 (305)
T COG0354 285 --RIANLALPPWVRLPFPY 301 (305)
T ss_pred --cccccccccccccccCC
Confidence 34445555666655543
No 13
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription]
Probab=99.96 E-value=1.1e-29 Score=237.49 Aligned_cols=283 Identities=19% Similarity=0.238 Sum_probs=192.9
Q ss_pred eEEEeCCCceeEEEEcCCHHHHHhhcccccCCC--------CCCCcEEEEEEEcCCCceeEeEEEEEecCC----EEEEE
Q 015320 80 GSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAG--------LAPGTGTLTVFTNENGGSIDDSVITKVKDD----HIYLV 147 (409)
Q Consensus 80 ~~l~DlS~~~~l~v~G~Da~~fLq~~~t~di~~--------l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d----~~lL~ 147 (409)
-.++-++++..|+|+|||+.+|||+++||||.. .......|++|||.|||++.|.++|+...+ +++|.
T Consensus 30 ~~~~~L~~RsliRv~GpDtvkFLqGL~TNdv~~~~p~~~~a~~t~~~~Ya~fLN~qGR~LyD~iLY~~~~~~~~~~~llE 109 (348)
T KOG2929|consen 30 FNLSLLESRSLIRVRGPDTVKFLQGLLTNDVTRHFPGIQGAPITRNGLYAAFLNTQGRLLYDTILYPTPVPVSEPELLLE 109 (348)
T ss_pred ceeeecCCceEEEEeCccHHHHHhhhhcccccccCcccccCCCCCchhhhhhhccCccEEEEEEEecCCCCCCCCceEEE
Confidence 357889999999999999999999999999986 223457899999999999999999998665 89999
Q ss_pred EcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeC-CeEEEEEe-CCChHHHHhccccCCCCCCCCceeEEEEECCeeEEEE
Q 015320 148 VNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHD-ERSLLALQ-GPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLT 225 (409)
Q Consensus 148 ~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~-~~~~l~l~-GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~ 225 (409)
|+.+....+..+|.+|... .+|+|+..+ ++..+.+. =|+. +. |....+- ....+...
T Consensus 110 ~d~~~~~~~~khl~~yrLr-----~kv~v~~id~el~tw~v~~~p~~-------~~-d~~~~~~--------~~~~~~~~ 168 (348)
T KOG2929|consen 110 CDGSVVGDFLKHLQKYRLR-----RKVEVEKIDHELKTWKVEVLPKN-------SI-DANVFEE--------NVLNVLYN 168 (348)
T ss_pred ecCccchHHHHHHHHhhhh-----hcceeeeCchhhceeeeeecccc-------cc-chhhcch--------hhhhhhhc
Confidence 9999999999999999774 589997643 43333222 1211 00 0000000 00111222
Q ss_pred eeCCCCCCeeEEEeecccHHHHHHHHHhccCCCceEecccchhhhhhhcccccccCCCCC-CCCcccccccc--cccccc
Q 015320 226 RTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQ-HVTPVEAGLTW--AIGKRR 302 (409)
Q Consensus 226 R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~-~~~P~E~gl~~--~V~f~K 302 (409)
|....-..||+++ +...+. .+.+ .........+..+|.++|++.-.+|+.+ ..+|+|+|+++ +|||+|
T Consensus 169 rdpr~s~~~~~~l-~~~f~~----~~~~----~~~~~d~~~Y~~~Ry~~Gv~EG~~el~pg~~lPLE~N~d~lngISf~K 239 (348)
T KOG2929|consen 169 RDPRFSGMGWRLL-PQDFAV----PTSE----QVSEGDESDYRLLRYQQGVAEGSQELIPGTLLPLESNFDFLNGISFDK 239 (348)
T ss_pred cCCcccccccccc-ceeecC----cccc----cccccchhHHHHHHHHcCcccchhhcCcccccceeccccccccccccC
Confidence 2222222344432 111111 0111 1222233348899999999999999986 56999999997 599999
Q ss_pred CcCCCCcCHHHHHhhHhcCC-CeEEEEEEeC----CCC----CCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcC
Q 015320 303 RAEGGFLGAEKILKQLDEGP-PVRRVGFFAG----GPP----ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKS 373 (409)
Q Consensus 303 ~~~GcyiGqE~lar~~~~g~-~rrlv~l~~~----~~~----~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~ 373 (409)
|||+|||.+||.++.|+ +||++.++++ ++. +..+..|....|+.+|.|.++. ...+||+++.
T Consensus 240 ---GCYVGQELTARThhtGViRKRl~P~r~~~~e~~p~~~~~~~~~~~v~~~~g~kvG~~~~~~------g~~glgllr~ 310 (348)
T KOG2929|consen 240 ---GCYVGQELTARTHHTGVIRKRLFPFRLDLAENEPLLVGFTNAPPEVEKKKGRKVGRVISGE------GLRGLGLLRL 310 (348)
T ss_pred ---cceechhheehhhhcceeeeeeeeEEecccCCCccccCCCCCccceecccCceeeeeeccC------cceeeeeeeh
Confidence 99999999999999995 8889999983 322 2233455546899999999885 5788999999
Q ss_pred CccCCCCEEEEEECCeEEeEEEEcCCCcCC
Q 015320 374 GLHKAGTKVKIEVRGKAYDGNITKMPFVPT 403 (409)
Q Consensus 374 ~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~ 403 (409)
+..... -....+.|..++++.. .|++-+
T Consensus 311 e~~~~~-~~~l~~~g~~i~i~~~-~p~W~p 338 (348)
T KOG2929|consen 311 EKFKAQ-FYKLTTKGENIKIKPQ-KPEWWP 338 (348)
T ss_pred hhhhcc-chhhhccCccceeccC-CCcccc
Confidence 864322 2344455654554443 344433
No 14
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=99.85 E-value=1.3e-20 Score=152.46 Aligned_cols=93 Identities=41% Similarity=0.736 Sum_probs=83.3
Q ss_pred CCCcCHHHHHhhHhcCCC-eEEEEEEeCC-CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEE
Q 015320 306 GGFLGAEKILKQLDEGPP-VRRVGFFAGG-PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVK 383 (409)
Q Consensus 306 GcyiGqE~lar~~~~g~~-rrlv~l~~~~-~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~ 383 (409)
|||+|||+++|++.+|.. |||++|.+++ .++..|++|+..+++.||.|||++|||+++++||||||+.+++.+|+.++
T Consensus 1 gdfiG~eal~r~~~~g~~rr~lv~l~~~~~~~~~~g~~v~~~~g~~vG~vTS~~~sp~~~~~Iala~v~~~~~~~g~~l~ 80 (95)
T PF08669_consen 1 GDFIGQEALARQKARGVKRRRLVGLTLDGDAPPRGGEPVYDEDGKPVGRVTSGAYSPTLGKNIALAYVDREYAEPGTELE 80 (95)
T ss_dssp S-STTHHHHHHHHHHTTS-EEEEEEEESSSS--STTCEEEETTTEEEEEEEEEEEETTTTEEEEEEEEEGGGGSTTSEEE
T ss_pred CCcCCHHHHHHHHhcCCCceEEEEEEECCccCCCCCCEEEECCCcEEeEEEEEeECCCCCceEEEEEECHHHcCCCCEEE
Confidence 699999999999999985 9999999986 57889999993399999999999999999999999999999999999999
Q ss_pred EEECCeEEeEEEEcC
Q 015320 384 IEVRGKAYDGNITKM 398 (409)
Q Consensus 384 v~~~g~~~~a~v~~~ 398 (409)
|++.|+.++|+|+++
T Consensus 81 v~~~g~~~~a~v~~~ 95 (95)
T PF08669_consen 81 VEIRGKRVPATVVKM 95 (95)
T ss_dssp EEETTEEEEEEEE-S
T ss_pred EEECCEEEEEEEeCc
Confidence 999999999999864
No 15
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.80 E-value=1.2e-18 Score=153.08 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=104.6
Q ss_pred eEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEE-EeCCeEEEEEeCCChHHHHhccccCCCCC--CCC
Q 015320 133 DSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWH-IHDERSLLALQGPLAAPVLQHLTKDDLSK--LYF 209 (409)
Q Consensus 133 d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~-~~~~~~~l~l~GP~a~~vL~~l~~~~l~~--l~~ 209 (409)
+.+|+|+++|+|+|+++++..+.+.+||++++.. .+|.|. .++++++|.||||+|+++|+++++.|++. +|+
T Consensus 33 ~~~v~rlg~d~~llv~~~~~~~~~~~~l~~~~~~-----~~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~ 107 (152)
T TIGR01375 33 EISVLWLGPDEWLIIAPQPEGAVLMAALAAALGP-----EPHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPV 107 (152)
T ss_pred CeEEEEEcCCEEEEEcCccchHHHHHHHHHHhCC-----CccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCC
Confidence 3689999999999999999999999999998753 258884 58889999999999999999999888877 999
Q ss_pred ceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhcc
Q 015320 210 GEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS 255 (409)
Q Consensus 210 ~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag 255 (409)
++++++.+++.++++.| +||+||||+++++++.+||+.|++++
T Consensus 108 ~~~~~~~i~~~~v~i~R---tGE~GfEi~v~~s~a~~lw~~L~~ag 150 (152)
T TIGR01375 108 GAGRRTIFGKIAAVIWR---TGEDTFEIIVRRSFAESLWHWLVDAS 150 (152)
T ss_pred CcEEEEEEcCeEEEEEE---cCCCeEEEEEEhhHHHHHHHHHHHHh
Confidence 99999999999999999 59999999999999999999999874
No 16
>TIGR03317 ygfZ_signature folate-binding protein YgfZ. YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.
Probab=99.78 E-value=2.1e-19 Score=135.68 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=59.3
Q ss_pred chhhhhhhcccccccCCCCCCCCcccccccc--ccccccCcCCCCcCHHHHHhhHhcC-CCeEEEEEE
Q 015320 266 ARDSLRLEAGLCLYGNDMEQHVTPVEAGLTW--AIGKRRRAEGGFLGAEKILKQLDEG-PPVRRVGFF 330 (409)
Q Consensus 266 a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~--~V~f~K~~~GcyiGqE~lar~~~~g-~~rrlv~l~ 330 (409)
+|+++|||+|+|.||+|++++++|+|+||++ +|||+| |||+|||+++|++++| ++|||+++.
T Consensus 2 ~~~~lRlE~g~~~~g~el~~~~~P~E~gl~~~~~v~~~K---g~yiGqe~l~r~~~~g~~~~~lv~l~ 66 (67)
T TIGR03317 2 AWELLRIAAGIPEGGAETSGEFLPQELNLDALGGVSFKK---GCYVGQEVVARMHYRGKVKRRLVRLR 66 (67)
T ss_pred HHHHHHHHcCCCccccccCCCCCHhHcCCCccCcEeCCC---CCccCHHHHHHHHHcCCCceeEEEee
Confidence 6899999999999999999999999999999 999999 9999999999999999 699999886
No 17
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=99.24 E-value=2.3e-10 Score=99.78 Aligned_cols=109 Identities=25% Similarity=0.236 Sum_probs=85.5
Q ss_pred EEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEE-EEeCCeEEEEEeCCChHHHHhccccCCCC--CCCCce
Q 015320 135 VITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLAAPVLQHLTKDDLS--KLYFGE 211 (409)
Q Consensus 135 ~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i-~~~~~~~~l~l~GP~a~~vL~~l~~~~l~--~l~~~~ 211 (409)
.++++++|+||++. .......+.|...+.. ...+ ++++.++.|.|.||+++++|++.+..|+. .|+.+.
T Consensus 33 ~~~wlgPdewLl~~--~~~~~~~~~l~~~l~~------~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~ 104 (147)
T PF04268_consen 33 AVLWLGPDEWLLLS--PDGEDLAAALAAALGG------HASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGR 104 (147)
T ss_dssp EEEEEETTEEEEEE--SS-TCHHHHHHHHHTT------SSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTE
T ss_pred eEEEEcCCEEEEEe--cCcchHHHHHHHhhCC------CeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCc
Confidence 78999999999998 2334557777766542 3455 67889999999999999999999999885 588899
Q ss_pred eEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhc
Q 015320 212 FRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEK 254 (409)
Q Consensus 212 ~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a 254 (409)
+..+.+++..+.+.| .|+++|+|++.+++|.++|+.|.++
T Consensus 105 ~a~T~~~~i~v~l~r---~~~~~f~l~v~rSfA~~l~~~L~~A 144 (147)
T PF04268_consen 105 AARTSFAHISVILWR---DGEDGFRLLVRRSFAEYLWHWLEDA 144 (147)
T ss_dssp EEEEEETTEEEEEEE---EETTEEEEEEBGGGHHHHHHHHHHH
T ss_pred EEEEeecCeEEEEEE---cCCCEEEEEEECchHHHHHHHHHHH
Confidence 999999999999999 4688999999999999999999875
No 18
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=99.05 E-value=3e-09 Score=94.20 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=107.7
Q ss_pred eCCCceeEEEEcCCHHH----HHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHH
Q 015320 84 DVSHMCGLSLKGKDCVP----FLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAH 159 (409)
Q Consensus 84 DlS~~~~l~v~G~Da~~----fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~ 159 (409)
.......+.+.++++.. +|...+...++.. ... .+..|.++++|+|+++.+..........
T Consensus 31 ~~p~~~~vl~~~~~~~~al~aal~~~~P~~~~~~-a~s--------------ge~~v~wlgPDeW~Vi~~~~~~~~~~aa 95 (189)
T COG4583 31 ERPEGRIVLVAAEAADPALSAALGRVLPAEPKGV-ASS--------------GERSVLWLGPDEWLVISEGGEDAAMKAA 95 (189)
T ss_pred cCCCCceEEeecCccchhHHHHHhhhcCCCCCCc-ccc--------------CceEEEEeCCCeeEEEcCCCccHHHHHH
Confidence 45556667777776555 4444443333321 111 1356788999999999987765542222
Q ss_pred HHHHHhhccCCCCCeEEEEeCCeEEEEEeCCChHHHHhccccCCC--CCCCCceeEEEEECCeeEEEEeeCCCCCCeeEE
Q 015320 160 IEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDL--SKLYFGEFRILDINGVSCFLTRTGYTGEDGFEI 237 (409)
Q Consensus 160 L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l--~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el 237 (409)
+.. . + ...--++++.....|.|.||+++++|++.|..|+ +.+|.+.+..+.+++..+.|.| +|++-||+
T Consensus 96 ~A~-~--~---~~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~~~~~vvl~r---~g~d~fei 166 (189)
T COG4583 96 FAS-L--E---ALASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIFGKAAVVLTR---TGADTFEI 166 (189)
T ss_pred Hhh-c--c---ccceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeeecceEEEEEe---ecCCeEEE
Confidence 221 1 1 1233336678899999999999999999999888 5689999999999999999999 78999999
Q ss_pred EeecccHHHHHHHHHhc
Q 015320 238 SVPSERAVDLAKAILEK 254 (409)
Q Consensus 238 ~~~~~~a~~l~~~L~~a 254 (409)
+|.+++++++|..|.++
T Consensus 167 ~V~RSFAe~~w~~L~~a 183 (189)
T COG4583 167 EVWRSFAESLWHLLLDA 183 (189)
T ss_pred EeehhhHHHHHHHHHHh
Confidence 99999999999999876
No 19
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=97.72 E-value=0.00023 Score=62.10 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=64.8
Q ss_pred HHHhCeEEEeCCC-ceeEEEEcCCHHHHHhhcccccCC--CCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCC
Q 015320 75 NCRQNGSLFDVSH-MCGLSLKGKDCVPFLEKLVIADVA--GLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAG 151 (409)
Q Consensus 75 a~r~~~~l~DlS~-~~~l~v~G~Da~~fLq~~~t~di~--~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~ 151 (409)
++-..+.+.|+|+ +..|+|+|+.+.+.|.+.++-|+. .+++|++..|.+- ++ .++|+|.+++.|.|.+..+
T Consensus 59 ~l~~~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T~~~----~i--~v~l~r~~~~~f~l~v~rS 132 (147)
T PF04268_consen 59 ALGGHASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAARTSFA----HI--SVILWRDGEDGFRLLVRRS 132 (147)
T ss_dssp HHTTSSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTEEEEEEET----TE--EEEEEEEETTEEEEEEBGG
T ss_pred hhCCCeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEEeec----Ce--EEEEEEcCCCEEEEEEECc
Confidence 3444789999997 789999999999999999999996 6899999999983 43 2567788899999999999
Q ss_pred CcHHHHHHHHHHH
Q 015320 152 CRDKDLAHIEAHM 164 (409)
Q Consensus 152 ~~~~~~~~L~~~~ 164 (409)
-++.+..||....
T Consensus 133 fA~~l~~~L~~Aa 145 (147)
T PF04268_consen 133 FAEYLWHWLEDAA 145 (147)
T ss_dssp GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 9999999998653
No 20
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.55 E-value=0.00067 Score=59.48 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=69.0
Q ss_pred CeEEEeCCC-ceeEEEEcCCHHHHHhhcccccCCC--CCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHH
Q 015320 79 NGSLFDVSH-MCGLSLKGKDCVPFLEKLVIADVAG--LAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDK 155 (409)
Q Consensus 79 ~~~l~DlS~-~~~l~v~G~Da~~fLq~~~t~di~~--l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~ 155 (409)
.+.+.|+|+ +..|.|+||.|.+.|+.++.-|+.. ++.+++..+.+ +++ .++|.|.+++.|-|.++.+.+..
T Consensus 68 ~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~i----~~~--~v~i~RtGE~GfEi~v~~s~a~~ 141 (152)
T TIGR01375 68 PHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGRRTIF----GKI--AAVIWRTGEDTFEIIVRRSFAES 141 (152)
T ss_pred ccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEEEEEE----cCe--EEEEEEcCCCeEEEEEEhhHHHH
Confidence 588999886 9999999999999999999889987 89999988776 232 47889999999999999999999
Q ss_pred HHHHHHHH
Q 015320 156 DLAHIEAH 163 (409)
Q Consensus 156 ~~~~L~~~ 163 (409)
+.++|...
T Consensus 142 lw~~L~~a 149 (152)
T TIGR01375 142 LWHWLVDA 149 (152)
T ss_pred HHHHHHHH
Confidence 99988764
No 21
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0015 Score=58.41 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=69.9
Q ss_pred hCeEEEeCCC-ceeEEEEcCCHHHHHhhcccccC--CCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcH
Q 015320 78 QNGSLFDVSH-MCGLSLKGKDCVPFLEKLVIADV--AGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRD 154 (409)
Q Consensus 78 ~~~~l~DlS~-~~~l~v~G~Da~~fLq~~~t~di--~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~ 154 (409)
...++.|+|| ...|+|+|+.|...|+.-|+.|+ +.+++|++.-|.+= ++ .+.+.|.++|.|-|++-.+-++
T Consensus 101 ~~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~~----~~--~vvl~r~g~d~fei~V~RSFAe 174 (189)
T COG4583 101 ALASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIFG----KA--AVVLTRTGADTFEIEVWRSFAE 174 (189)
T ss_pred ccceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeeec----ce--EEEEEeecCCeEEEEeehhhHH
Confidence 4458899998 78899999999999999999999 57899999988874 32 3678899999999999999889
Q ss_pred HHHHHHHHHHh
Q 015320 155 KDLAHIEAHMK 165 (409)
Q Consensus 155 ~~~~~L~~~~~ 165 (409)
.+..+|.....
T Consensus 175 ~~w~~L~~as~ 185 (189)
T COG4583 175 SLWHLLLDASA 185 (189)
T ss_pred HHHHHHHHhhh
Confidence 99888886543
No 22
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=96.15 E-value=0.051 Score=45.09 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=50.6
Q ss_pred CCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEe-------cCCEEEEEEcCC
Q 015320 86 SHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-------KDDHIYLVVNAG 151 (409)
Q Consensus 86 S~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~-------~~d~~lL~~~~~ 151 (409)
+..++|+|+||+|.+.++.++ .+.+++....|+.+.+.+|.++|++.+..+ +||-.-|.+..+
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~---~~~~~~r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg 81 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLF---GKSPKPRRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGG 81 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTE---SSSTTTTEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEEEESS
T ss_pred ceEEEEEeEcHHHHHHHHHHh---CccccCcEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEEcCCC
Confidence 456899999999999999999 334568999999999999999999988775 345555555443
No 23
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=93.96 E-value=1.3 Score=36.85 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEECC------ee--EEEEe--eCCCCCCeeEEEeeccc--HHHH
Q 015320 180 DERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDING------VS--CFLTR--TGYTGEDGFEISVPSER--AVDL 247 (409)
Q Consensus 180 ~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~g------~~--~~l~R--~~~~Ge~G~el~~~~~~--a~~l 247 (409)
...+++.|.||+|.+++++++...++ ........+.+ .+ +...+ .+||||+-.|+++.-.. ...+
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~~~~~~---~r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg~~v~~~i 88 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLFGKSPK---PRRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGGPAVVRRI 88 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTESSSTT---TTEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEEEESSHHHHHHH
T ss_pred ceEEEEEeEcHHHHHHHHHHhCcccc---CcEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEEcCCCHHHHHHH
Confidence 35789999999999999999843322 22222222211 12 22333 47999999999997643 3556
Q ss_pred HHHHHhccCCCceEecccch
Q 015320 248 AKAILEKSEGKVRLTGLGAR 267 (409)
Q Consensus 248 ~~~L~~ag~~~~~~~G~~a~ 267 (409)
.+.|.+. |.+++....+
T Consensus 89 l~~l~~~---G~R~A~pGEF 105 (114)
T PF10396_consen 89 LEALLKA---GARLAEPGEF 105 (114)
T ss_dssp HHHHHHT---T-EE--TTHH
T ss_pred HHHHHHc---CceEcCCchh
Confidence 6666665 5665554433
No 24
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [].; GO: 0004526 ribonuclease P activity, 0006396 RNA processing
Probab=93.75 E-value=0.093 Score=41.94 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=45.0
Q ss_pred eeEEEeecccHHHHHHHHHhccCCCceEecccchhhhhhhcccccccCCCCC
Q 015320 234 GFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQ 285 (409)
Q Consensus 234 G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~ 285 (409)
||.|++|..-+..+|..|.-. |+.+.|++.++.+-.|+|.|.+..|..+
T Consensus 1 gw~lIlP~~w~~~fW~~L~~~---g~r~~GL~e~~~~~~E~g~~~FP~DyPd 49 (92)
T PF08170_consen 1 GWDLILPWGWGMPFWIALVYR---GARAGGLRERRQLAFESGIPSFPDDYPD 49 (92)
T ss_pred CeEEEEecHHHHHHHHHHHHh---CCeeehHHHHHHHHHHcCCCcCCCCCCC
Confidence 689999999999999999987 6999999999999999999999988754
No 25
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=93.68 E-value=0.14 Score=52.24 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=53.0
Q ss_pred CCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEe-------cCCEEEEEEcCC
Q 015320 86 SHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-------KDDHIYLVVNAG 151 (409)
Q Consensus 86 S~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~-------~~d~~lL~~~~~ 151 (409)
+.-+.++|+||+|...++.++.. +...++....|+.+.+++|.++|++.+..+ +||-.-+-|.++
T Consensus 17 ~aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg 88 (454)
T COG0486 17 GAIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGG 88 (454)
T ss_pred ceEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEEeCCCCcccccEEEEEcCCC
Confidence 34688999999999999999998 555578899999999999999999999875 455455555444
No 26
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=90.45 E-value=2.1 Score=39.02 Aligned_cols=72 Identities=33% Similarity=0.430 Sum_probs=53.7
Q ss_pred CCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHh
Q 015320 180 DERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAVDLAKAILE 253 (409)
Q Consensus 180 ~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ 253 (409)
+...+|.|.||.+.+.|+.++..|+..++.+.+...-+- | ..+.+.|. ++..|.++++.+.+..+++.|..
T Consensus 5 s~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~---~~~~~~l~~~~~~~~~~~~~L~~ 81 (211)
T PF01571_consen 5 SHRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRL---GDDEFLLIVPASAADALLEWLKK 81 (211)
T ss_dssp TTSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEE---ETTEEEEEECCTCHHHHHHHHHH
T ss_pred CCcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEee---cCceEEEEecchhHHHHHHHHHH
Confidence 457999999999999999999888888877665554332 2 24677773 45559999999999888888765
Q ss_pred c
Q 015320 254 K 254 (409)
Q Consensus 254 a 254 (409)
.
T Consensus 82 ~ 82 (211)
T PF01571_consen 82 Y 82 (211)
T ss_dssp H
T ss_pred h
Confidence 4
No 27
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=87.98 E-value=3.9 Score=40.81 Aligned_cols=80 Identities=21% Similarity=0.199 Sum_probs=59.8
Q ss_pred CCeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE---CC---eeEEEEeeCCCCCCeeEEEeecccHH
Q 015320 172 GDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI---NG---VSCFLTRTGYTGEDGFEISVPSERAV 245 (409)
Q Consensus 172 ~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i---~g---~~~~l~R~~~~Ge~G~el~~~~~~a~ 245 (409)
..|.+-+...+..|.|.||.+.+.|+.++..|+..++.+++...-+ .| ..+++.|. +++.|.+.++...+.
T Consensus 42 ~~~~l~dls~~~~i~v~G~Da~~fLq~~~t~dv~~l~~g~~~~~~~l~~~G~i~~d~~v~r~---~~~~~ll~~~~~~~~ 118 (359)
T PRK00389 42 TDAGLFDVSHMGEVDVTGPDALAFLQYLLANDVSKLKPGKAQYTCMLNEDGGVIDDLIVYKL---SEDEYLLVVNAANRE 118 (359)
T ss_pred hCceEEECCCcEEEEEECCCHHHHHhhhcccccccCCCCcEEEeEEECCCCCEEEeEEEEEe---cCCEEEEEECcccHH
Confidence 3677765556899999999999999999988888776655443322 22 24667773 467899999988888
Q ss_pred HHHHHHHhc
Q 015320 246 DLAKAILEK 254 (409)
Q Consensus 246 ~l~~~L~~a 254 (409)
.+.+.|...
T Consensus 119 ~~~~~L~~~ 127 (359)
T PRK00389 119 KDLAWIKSH 127 (359)
T ss_pred HHHHHHHhh
Confidence 888888765
No 28
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=87.33 E-value=4.2 Score=40.66 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=57.2
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015320 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.|-+-+.+.+..+.|.||.+.+.|+.++..|+..++.+++..+.+- | ..+++.| .+++.|.|.++.+.+..
T Consensus 42 ~~~l~dls~~~~i~vsG~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~i~~d~~v~r---~~~d~~~l~~~~~~~~~ 118 (361)
T TIGR00528 42 DAGLFDVSHMGIVDLSGSRSLEFLQRLLPNDVAALTPGKAQYSVLLNPQGGVVDDLIIYY---FGEDRFRLVVNAATREK 118 (361)
T ss_pred hCcEEECCCcEEEEEECCCHHHHHhHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEE---ecCCEEEEEECCccHHH
Confidence 5667554568999999999999999999888887766655543322 2 2356667 45778999998887777
Q ss_pred HHHHHHh
Q 015320 247 LAKAILE 253 (409)
Q Consensus 247 l~~~L~~ 253 (409)
+++.|..
T Consensus 119 ~~~~l~~ 125 (361)
T TIGR00528 119 DLSWITE 125 (361)
T ss_pred HHHHHHH
Confidence 7766664
No 29
>PLN02319 aminomethyltransferase
Probab=87.30 E-value=4.5 Score=41.20 Aligned_cols=80 Identities=21% Similarity=0.154 Sum_probs=59.2
Q ss_pred CCeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHH
Q 015320 172 GDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAV 245 (409)
Q Consensus 172 ~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~ 245 (409)
..|-+-+......|.|.||.+.+.|+.++..|+..++.+++..+.+- | .++++.|. +++.|.|.++...+.
T Consensus 73 ~~~gl~DlS~~~~i~V~G~Da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r~---~~d~~~l~~~~~~~~ 149 (404)
T PLN02319 73 QNGSLFDVSHMCGLSLKGKDAIPFLETLVVADIAGLKDGTGTLSVFTNEKGGIIDDTVITKV---TDDHIYLVVNAGCRD 149 (404)
T ss_pred hCeEEEECCCcEEEEEECCCHHHHHhhhcccccCCCCCCCEEEeEEECCCCeEEEEEEEEEE---cCCEEEEEECCccHH
Confidence 36777554568999999999999999999888888866655544332 2 24677773 577899998888777
Q ss_pred HHHHHHHhc
Q 015320 246 DLAKAILEK 254 (409)
Q Consensus 246 ~l~~~L~~a 254 (409)
.+++.|...
T Consensus 150 ~~~~~l~~~ 158 (404)
T PLN02319 150 KDLAHIEEH 158 (404)
T ss_pred HHHHHHHhh
Confidence 777777653
No 30
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=84.48 E-value=6.2 Score=39.88 Aligned_cols=79 Identities=25% Similarity=0.224 Sum_probs=60.0
Q ss_pred CCeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHH
Q 015320 172 GDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAV 245 (409)
Q Consensus 172 ~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~ 245 (409)
.+|-|=+.+....+.|+||.|.+.|+.++..+++.++.+.+..+.+- | .+.++.| .+++.|.+++....+.
T Consensus 46 ~~aGlfDvShmgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~r---l~~d~f~lv~~a~~~~ 122 (379)
T COG0404 46 EAAGLFDVSHMGKVEVSGPDAAAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYR---LGEDRFFLVTNAATAE 122 (379)
T ss_pred hcCceEeccCceEEEEECCCHHHHHHHHcccccCcCCCCcEEEeeeECCCCCEEeeEEEEE---ecCCeEEEEeCccchH
Confidence 35767443457899999999999999999889988877665544322 1 2467777 6789999999888888
Q ss_pred HHHHHHHh
Q 015320 246 DLAKAILE 253 (409)
Q Consensus 246 ~l~~~L~~ 253 (409)
..++.+..
T Consensus 123 ~~~~~l~~ 130 (379)
T COG0404 123 KDLAWLER 130 (379)
T ss_pred HHHHHHHH
Confidence 88887775
No 31
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=84.45 E-value=3.2 Score=42.86 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=48.7
Q ss_pred CCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEe-------cCCEEEEEEcCC
Q 015320 86 SHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-------KDDHIYLVVNAG 151 (409)
Q Consensus 86 S~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~-------~~d~~lL~~~~~ 151 (409)
+.-++|+|+||+|.+.++.++..+.. .++....|+.+.+++|.++|++.+..+ |||-.=+.+.++
T Consensus 7 ~~i~viRiSG~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg 78 (442)
T TIGR00450 7 SAIHIIRLSGPDSLSILKKITNKLNT-ASGMRIQYGHIIDSNNKCKDDELLFKFVAPNSYTGEDVIEIQCHGS 78 (442)
T ss_pred ceEEEEEeehHHHHHHHHHHhCCCCC-CCCcEEEEEEEECCCCCEeeeEEEEEEcCCCCcccccEEEEECCCC
Confidence 44689999999999999999843221 245677899999989999999988775 445555555443
No 32
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=81.36 E-value=13 Score=37.24 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=57.1
Q ss_pred CeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHHH
Q 015320 173 DVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAVD 246 (409)
Q Consensus 173 ~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~~ 246 (409)
.|-+-+......|.|.||.+.+.|+.++..|+..++.+++....+- | .++++.|. ++.|.|.++...+..
T Consensus 51 ~a~l~Dls~~~~i~v~G~Da~~fLq~~~tndi~~l~~g~~~y~~~ln~~G~i~~d~~v~r~----~d~~~L~~~~~~~~~ 126 (370)
T PRK13579 51 HAGLFDVSHMGQIEVSGKDAAAALERLVPVDILALKEGRQRYTFFTNEQGGILDDLMVTNL----GDHLFLVVNAACKDA 126 (370)
T ss_pred ccEEEECCCcEEEEEECCCHHHHHHHhccccCCCCCCCCEEEeEEECCCCeEEEeEEEEEE----CCeEEEEECcCCHHH
Confidence 5777554568999999999999999999888888766655544322 2 24677774 357988888877777
Q ss_pred HHHHHHhc
Q 015320 247 LAKAILEK 254 (409)
Q Consensus 247 l~~~L~~a 254 (409)
+++.|...
T Consensus 127 ~~~~l~~~ 134 (370)
T PRK13579 127 DIAHLREH 134 (370)
T ss_pred HHHHHHHh
Confidence 77777653
No 33
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=79.96 E-value=18 Score=36.41 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=53.6
Q ss_pred CCeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHH
Q 015320 172 GDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAV 245 (409)
Q Consensus 172 ~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~ 245 (409)
..|-|=+......+.|+||.+.+.|+.++..+++.++.++...+.+- | .++++.|. +++.|.+.+......
T Consensus 52 ~~~gl~D~S~~~~i~V~G~Da~~fL~~l~t~di~~l~~G~~~yt~~ln~~G~i~~D~~v~r~---~ed~~~l~~~~~~~~ 128 (368)
T PRK12486 52 EHVQVWDVAVERQVEIRGPDAARLVQMLTPRDLRGMKPGQCYYVPIVDETGGMLNDPVALKL---AEDRWWISIADSDLL 128 (368)
T ss_pred hcceEEEcCCcEEEEEECCCHHHHHHHhcccccccCCCCcEEEEEEEcCCCcEEeeEEEEEe---cCCEEEEEEcCccHH
Confidence 46777444567899999999999999999888888877665544321 1 24677884 577888877655544
Q ss_pred HHHHHHH
Q 015320 246 DLAKAIL 252 (409)
Q Consensus 246 ~l~~~L~ 252 (409)
..++.+.
T Consensus 129 ~~l~~~~ 135 (368)
T PRK12486 129 LWVKGLA 135 (368)
T ss_pred HHHHHhh
Confidence 4444443
No 34
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=78.81 E-value=5.5 Score=41.19 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=53.2
Q ss_pred CCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEe-------cCCEEEEEEcCCCcHHHHH
Q 015320 86 SHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-------KDDHIYLVVNAGCRDKDLA 158 (409)
Q Consensus 86 S~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~-------~~d~~lL~~~~~~~~~~~~ 158 (409)
+.-++|+|+||+|.+.++.++...+ .++..+.|+.+.++ |.++|++.+..+ |||-.=+.+.++ ..+.+
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~--~~v~~ 91 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKL--PKPRTAHYGHIRDP-GEVIDEVLVLYFPAPNSFTGEDVVEIQCHGG--PAVLN 91 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCC--CCCcEEEEEEEecC-CcccceEEEEEecCCCCccCCcEEEEECCCC--HHHHH
Confidence 4568999999999999999996433 36788999999886 899999998775 456555555443 23444
Q ss_pred HHHHHH
Q 015320 159 HIEAHM 164 (409)
Q Consensus 159 ~L~~~~ 164 (409)
.+-+.+
T Consensus 92 ~il~~l 97 (449)
T PRK05291 92 LILELL 97 (449)
T ss_pred HHHHHH
Confidence 443333
No 35
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=76.88 E-value=30 Score=26.27 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=35.9
Q ss_pred EEEeCC-CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCc
Q 015320 328 GFFAGG-PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGL 375 (409)
Q Consensus 328 ~l~~~~-~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~ 375 (409)
.+.++. .-+.+|++|. ..|-.||.|++..+++..++-..-..|+.++
T Consensus 6 ~~~~~~~~GL~~gs~V~-~~Gv~VG~V~~i~l~~~~~~v~v~~~i~~~~ 53 (81)
T PF02470_consen 6 TVYFDDAGGLSVGSPVR-YRGVEVGKVTSIELDPDGNRVRVTLRIDPDY 53 (81)
T ss_pred EEEECCcCCCCCcCEEE-ECCEEEEEEEEEEEcCCCCEEEEEEEEcCCc
Confidence 344433 4567899998 7999999999998877766666667777776
No 36
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=75.72 E-value=17 Score=41.47 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=59.9
Q ss_pred CCeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEEC---C---eeEEEEeeCCCCCCeeEEEeecccHH
Q 015320 172 GDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDIN---G---VSCFLTRTGYTGEDGFEISVPSERAV 245 (409)
Q Consensus 172 ~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~---g---~~~~l~R~~~~Ge~G~el~~~~~~a~ 245 (409)
..|-|-+.+....|.|.||++.+.|+.++..|++.++.+++...-+- | .++++.| .+|+.|.|.++...+.
T Consensus 644 ~~vgl~D~S~~g~i~V~G~DA~~fL~~~~tndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r---~~ed~~~l~~~~~~~~ 720 (985)
T TIGR01372 644 ESVGLFDASTLGKIEVQGPDAAEFLNRVYTNAFTKLKVGKARYGLMLREDGMVFDDGVTSR---LAEDRFLMTTTTGGAA 720 (985)
T ss_pred hceEEEECCCcEEEEEECcCHHHHHhhhcccccCcCCCCCEEEeEEECCCCeEEEeEEEEE---EeCCEEEEEeCCcCHH
Confidence 46777554568999999999999999999888888877665544332 2 2456777 4578899999888888
Q ss_pred HHHHHHHhc
Q 015320 246 DLAKAILEK 254 (409)
Q Consensus 246 ~l~~~L~~a 254 (409)
.+++.|...
T Consensus 721 ~~~~~L~~~ 729 (985)
T TIGR01372 721 RVLQHLEEW 729 (985)
T ss_pred HHHHHHHHh
Confidence 887777553
No 37
>PRK09559 putative global regulator; Reviewed
Probab=73.78 E-value=18 Score=35.61 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=54.5
Q ss_pred EEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE---CC---eeEEEEeeCCCCCCeeEEEeecccHHHHH
Q 015320 175 SWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI---NG---VSCFLTRTGYTGEDGFEISVPSERAVDLA 248 (409)
Q Consensus 175 ~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i---~g---~~~~l~R~~~~Ge~G~el~~~~~~a~~l~ 248 (409)
.+-+.+++.+|.|.||++.+.|+.++..|+..++.+.....-+ .| ..+++.|. +++|.++++++.+..+.
T Consensus 20 ~l~~L~~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~----~~~~~l~~~~~~~~~~~ 95 (327)
T PRK09559 20 TLISLDDWALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRR----GDGFAWIERRSVRENQL 95 (327)
T ss_pred EEEcCccceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEe----CCeEEEEeChhhhHHHH
Confidence 3434457899999999999999999988988876655443322 22 13456663 24588888888888888
Q ss_pred HHHHhc
Q 015320 249 KAILEK 254 (409)
Q Consensus 249 ~~L~~a 254 (409)
+.|...
T Consensus 96 ~~L~ky 101 (327)
T PRK09559 96 TELKKY 101 (327)
T ss_pred HHHhhc
Confidence 888764
No 38
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=65.69 E-value=31 Score=35.71 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=48.2
Q ss_pred CCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE-------CCeeEEEEe--eCCCCCCeeEEEeecc--cHHHHH
Q 015320 180 DERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI-------NGVSCFLTR--TGYTGEDGFEISVPSE--RAVDLA 248 (409)
Q Consensus 180 ~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i-------~g~~~~l~R--~~~~Ge~G~el~~~~~--~a~~l~ 248 (409)
...+++.|.||.|.+++++++.... .+........+ +.+=+...+ .+||||+-.|+++.-. ....+.
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~il 94 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKL--PKPRTAHYGHIRDPGEVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPAVLNLIL 94 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCC--CCCcEEEEEEEecCCcccceEEEEEecCCCCccCCcEEEEECCCCHHHHHHHH
Confidence 3478899999999999999985221 11111111111 111122233 4699999999999764 336667
Q ss_pred HHHHhccCCCceEecc
Q 015320 249 KAILEKSEGKVRLTGL 264 (409)
Q Consensus 249 ~~L~~ag~~~~~~~G~ 264 (409)
+.|.+. |++++-.
T Consensus 95 ~~l~~~---g~r~A~p 107 (449)
T PRK05291 95 ELLLAL---GARLAEP 107 (449)
T ss_pred HHHHHc---CCEEccC
Confidence 777765 4555443
No 39
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=65.12 E-value=29 Score=33.98 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=55.5
Q ss_pred eEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE---CCe---eEEEEeeCCCCCCeeEEEeecccHHHH
Q 015320 174 VSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI---NGV---SCFLTRTGYTGEDGFEISVPSERAVDL 247 (409)
Q Consensus 174 V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i---~g~---~~~l~R~~~~Ge~G~el~~~~~~a~~l 247 (409)
..+....++++|.|+|+.+.+.|+.....|+..++..+...+-+ .|. ..++.|. +++|-+.++.+..+.+
T Consensus 14 ~~l~~l~~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~~----~d~~~l~~~~~~~~~~ 89 (305)
T COG0354 14 LTLVLLSDRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYRR----GDGLYLDTDKSVLEAL 89 (305)
T ss_pred cEEEecCCceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEEe----CCeEEEEcchhhcHHH
Confidence 33344467899999999999999999888888887765444332 221 2344443 3889999999988888
Q ss_pred HHHHHhc
Q 015320 248 AKAILEK 254 (409)
Q Consensus 248 ~~~L~~a 254 (409)
+..|..-
T Consensus 90 l~~L~kY 96 (305)
T COG0354 90 LKRLKKY 96 (305)
T ss_pred HHHHHhc
Confidence 8888654
No 40
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=64.79 E-value=28 Score=36.01 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=48.2
Q ss_pred CeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE---CC-----eeEEEEe--eCCCCCCeeEEEeecc--cHHHHH
Q 015320 181 ERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI---NG-----VSCFLTR--TGYTGEDGFEISVPSE--RAVDLA 248 (409)
Q Consensus 181 ~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i---~g-----~~~~l~R--~~~~Ge~G~el~~~~~--~a~~l~ 248 (409)
..+++.|.||+|.+++++++..+.. .+........+ .+ +-+..++ .+||||+-.|+++.-. ....+.
T Consensus 8 ~i~viRiSG~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il 86 (442)
T TIGR00450 8 AIHIIRLSGPDSLSILKKITNKLNT-ASGMRIQYGHIIDSNNKCKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEIL 86 (442)
T ss_pred eEEEEEeehHHHHHHHHHHhCCCCC-CCCcEEEEEEEECCCCCEeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHH
Confidence 4688999999999999999842111 11122111111 12 1123333 4699999999999764 346667
Q ss_pred HHHHhccCCCceEecc
Q 015320 249 KAILEKSEGKVRLTGL 264 (409)
Q Consensus 249 ~~L~~ag~~~~~~~G~ 264 (409)
+.|.+. |++++..
T Consensus 87 ~~l~~~---g~R~A~p 99 (442)
T TIGR00450 87 QLCLKS---GARLAQP 99 (442)
T ss_pred HHHHHc---CCeEcCC
Confidence 777665 4555443
No 41
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=63.63 E-value=13 Score=27.98 Aligned_cols=44 Identities=32% Similarity=0.444 Sum_probs=31.2
Q ss_pred CCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEE
Q 015320 96 KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYL 146 (409)
Q Consensus 96 ~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL 146 (409)
|+..+=|=.+.+..+.. . -+.++|++|.-++|+.+.| ++|++++
T Consensus 25 P~SleeLl~ia~~kfg~-----~-~~~v~~~dgaeIdDI~~IR-DgD~L~~ 68 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGF-----S-ATKVLNEDGAEIDDIDVIR-DGDHLYL 68 (69)
T ss_pred CccHHHHHHHHHHHhCC-----C-ceEEEcCCCCEEeEEEEEE-cCCEEEE
Confidence 55555555555555542 2 5788999999999999999 4677665
No 42
>PF06978 POP1: Ribonucleases P/MRP protein subunit POP1; InterPro: IPR009723 This entry represents a conserved region approximately 150 residues long located towards the N terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (3.1.26.5 from EC) []. These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends.; GO: 0004526 ribonuclease P activity, 0001682 tRNA 5'-leader removal
Probab=61.80 E-value=7.4 Score=35.31 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=43.3
Q ss_pred CcchHHHHHCCCeEeecCCcccccccc-cCHHHHHHHHHhCeEEEeCCCceeEEEEcC
Q 015320 40 TALHDFHVANGGKMVPFAGWSMPIQYK-DSIMESTLNCRQNGSLFDVSHMCGLSLKGK 96 (409)
Q Consensus 40 tpl~~~~~~~Ga~~~~~~g~~~p~~f~-~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~ 96 (409)
-|-|-||.+. ..|...-||-+|..=. .+...=|++.+++|.++|.|+++.|+|+|.
T Consensus 131 L~THiWHAKR-f~M~~~wG~~lp~~~~~K~~R~~~Ra~~~~~~~~D~SY~~~i~l~g~ 187 (187)
T PF06978_consen 131 LETHIWHAKR-FHMIKRWGYRLPLTPTQKSFRATYRASKHGCVLHDASYYSCIELEGT 187 (187)
T ss_pred cchhhHHHHH-HHHHHHcCCCCCCCCCCcchhHHHHHhcCCEEEEecccceeEEEEeC
Confidence 3667777754 4677788999987432 234566789999999999999999999983
No 43
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=55.99 E-value=31 Score=34.20 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=56.3
Q ss_pred eEEEeCCCceeEEEEcCCHHHHHhhccc--ccCCCCCCCcEEEEEEEcCCCceeEeEEEEE---ecCCEEEEEEcCCCcH
Q 015320 80 GSLFDVSHMCGLSLKGKDCVPFLEKLVI--ADVAGLAPGTGTLTVFTNENGGSIDDSVITK---VKDDHIYLVVNAGCRD 154 (409)
Q Consensus 80 ~~l~DlS~~~~l~v~G~Da~~fLq~~~t--~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r---~~~d~~lL~~~~~~~~ 154 (409)
+.+--+...+.+.+.||.+.+-||.+++ .|+.+|.=|+..+.-+ +|..- +.|.| .+||.|-|.+++..+.
T Consensus 163 v~~~~~~~r~l~A~Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~~---~G~~~--~~vtr~gytgEDGfeisv~~~~Av 237 (401)
T KOG2770|consen 163 VSWETLDGRSLLALQGPEAAKVLQKLLSKLGDLSKLPFGQSQVYDF---KGGPG--CRVTRGGYTGEDGFEISVPPEGAV 237 (401)
T ss_pred eeEEEecccchhhhcChHHHHHHHHhhccccchhcccccceEEEEe---cCCCc--eEEeccccccCCceEEecCCchhH
Confidence 4442233788899999999999999999 9999998888755444 44432 33444 3789999999888777
Q ss_pred HHHHHHH
Q 015320 155 KDLAHIE 161 (409)
Q Consensus 155 ~~~~~L~ 161 (409)
.+.+.|.
T Consensus 238 ~la~~LL 244 (401)
T KOG2770|consen 238 DLAETLL 244 (401)
T ss_pred HHHHHHh
Confidence 6666543
No 44
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=52.95 E-value=76 Score=32.79 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=46.9
Q ss_pred CeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEE--------CCeeEEEEe--eCCCCCCeeEEEeecc--cHHHHH
Q 015320 181 ERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDI--------NGVSCFLTR--TGYTGEDGFEISVPSE--RAVDLA 248 (409)
Q Consensus 181 ~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i--------~g~~~~l~R--~~~~Ge~G~el~~~~~--~a~~l~ 248 (409)
..+++.+.||+|.+++++++.. +...+........+ +.+=+..++ .+||||+-.|+.|.-. ....+.
T Consensus 18 aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL 96 (454)
T COG0486 18 AIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLIL 96 (454)
T ss_pred eEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHH
Confidence 4688999999999999999874 22222222222221 111133344 4699999999998754 336667
Q ss_pred HHHHhcc
Q 015320 249 KAILEKS 255 (409)
Q Consensus 249 ~~L~~ag 255 (409)
+.+++.|
T Consensus 97 ~~~l~~G 103 (454)
T COG0486 97 ELLLKLG 103 (454)
T ss_pred HHHHHcC
Confidence 7777664
No 45
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=51.82 E-value=72 Score=34.71 Aligned_cols=84 Identities=19% Similarity=0.091 Sum_probs=60.4
Q ss_pred HhCeEEEeCCC-ceeEEEEcCCHHHHHhhcccccCCC--CCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCc
Q 015320 77 RQNGSLFDVSH-MCGLSLKGKDCVPFLEKLVIADVAG--LAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCR 153 (409)
Q Consensus 77 r~~~~l~DlS~-~~~l~v~G~Da~~fLq~~~t~di~~--l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~ 153 (409)
+.+|-|-|++. .+.|.|.||.+.+.||.++-.|++. ++.-+++ .++.-+--+--+.|...+|=.|.|-.+...+
T Consensus 605 ~~~v~l~DvT~~~~~l~i~GP~sR~vLqelt~~dls~~~fp~~~~k---~l~vg~~girairis~~GELG~~Lyip~e~~ 681 (856)
T KOG2844|consen 605 GSNVELKDVTDELGALSIIGPQSRKVLQELTDADLSDDHFPFLTTK---ELKVGNAGIRAIRISHTGELGWELYIPNEDA 681 (856)
T ss_pred CCceeeeechhhhceeeecCchHHHHHHhccCCCCCccccCcceee---eeeccccceEEEEEEeccccceEEEechHHH
Confidence 66889999985 8999999999999999999999974 2222322 3333333333455666677789999988777
Q ss_pred HHHHHHHHHH
Q 015320 154 DKDLAHIEAH 163 (409)
Q Consensus 154 ~~~~~~L~~~ 163 (409)
..+.+.|-+.
T Consensus 682 ~~vY~~im~A 691 (856)
T KOG2844|consen 682 VAVYRAIMNA 691 (856)
T ss_pred HHHHHHHHhh
Confidence 7777766544
No 46
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=48.60 E-value=1.2e+02 Score=24.52 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=29.6
Q ss_pred EEEEEEeCCCCCCCCCeEecCCCcEeEEEEeeeecCCCCceEE
Q 015320 325 RRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIA 367 (409)
Q Consensus 325 rlv~l~~~~~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~ia 367 (409)
.++....+..+|.-+++|++.+++.||.|... +.|.- .+..
T Consensus 14 g~vi~~~~~~iP~l~~~V~~~~~k~IG~V~dV-fGPv~-~PY~ 54 (98)
T COG3277 14 GMVIVRDNDRIPPLNAPVYDANLKRIGKVVDV-FGPVD-EPYI 54 (98)
T ss_pred ceEEEeCCCCCCCCCCeeEecCCCEEEEEEEE-EccCC-CCEE
Confidence 34444443467888999998899999999876 78873 3443
No 47
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=37.40 E-value=1.8e+02 Score=21.95 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCc
Q 015320 333 GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGL 375 (409)
Q Consensus 333 ~~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~ 375 (409)
+..|.-|+.|++.+.+.||.|-.. +.|. +++....-+....
T Consensus 21 ~~~P~~n~~V~~~~~~~IGkV~dI-fGPV-~~pY~~Vk~~~~~ 61 (73)
T PRK13149 21 DKQPPIGSVVYDKKLKKIGKVVDV-FGPV-KEPYVLVKPDKKD 61 (73)
T ss_pred CCCCCCCCEeECCCCCEeEEEEEE-ECCC-CCcEEEEEeCCCC
Confidence 346778999998899999999866 7887 4566555555543
No 48
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=36.19 E-value=88 Score=23.27 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.0
Q ss_pred CCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEc
Q 015320 338 SHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVK 372 (409)
Q Consensus 338 ~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~ 372 (409)
.|.+|++.+|+.+|+|......+.-++..++.+-.
T Consensus 10 ~g~~V~~~~G~~iG~V~di~id~~~~~i~~i~v~~ 44 (79)
T PF05239_consen 10 IGKEVIDRDGEKIGKVKDIVIDPKTGKIVGIVVSS 44 (79)
T ss_dssp TTSEEEETTSCEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred cCCEEEcCCCCEEEEEEEEEEeCCCCCEEEEEEcC
Confidence 37788878899999999998888655555544433
No 49
>PRK10807 paraquat-inducible protein B; Provisional
Probab=33.09 E-value=2.1e+02 Score=30.52 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=43.4
Q ss_pred EEEEeCC-CCCCCC-CeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCc---cCCCCEEEE
Q 015320 327 VGFFAGG-PPARSH-SKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGL---HKAGTKVKI 384 (409)
Q Consensus 327 v~l~~~~-~~~~~g-~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~---~~~g~~l~v 384 (409)
+.+.++. ..+..| ++|+ ..|-.||.|++..+++...+.++-+.|+.++ ...++.+-|
T Consensus 46 itl~~~~a~gl~~GkT~I~-yrgv~VG~V~~v~l~~d~~~V~~~~~i~~~~~~ll~~~trFWv 107 (547)
T PRK10807 46 VTLITTNAEGIEAGKTTIK-SRSVDVGVVESVTLSDDLTHVEIKARLNSGMEKLLHKDSVFWV 107 (547)
T ss_pred EEEEECCCCCcCcCCceeE-ECCceEEEEEEEEECCCCCeEEEEEEECccHHHhhcCCCEEEE
Confidence 4445443 446778 8998 7899999999999999988889999999875 345665433
No 50
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=32.31 E-value=2.8e+02 Score=23.23 Aligned_cols=86 Identities=26% Similarity=0.343 Sum_probs=50.4
Q ss_pred EEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEeCCChHH---HHhccccCCCCCCCCc
Q 015320 134 SVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAP---VLQHLTKDDLSKLYFG 210 (409)
Q Consensus 134 ~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~GP~a~~---vL~~l~~~~l~~l~~~ 210 (409)
..|.|. +|+.-|+|.+++ .. ..|+++ ..+.+|.++||-+.+ +|.++.. ++++
T Consensus 35 ~sIt~t-~eelsivc~~~~-----------vp------~~V~~~--~GW~~lk~~gpf~FgltGilasV~~-pLsd---- 89 (128)
T COG3603 35 WSITRT-PEELSIVCLADR-----------VP------DVVQIE--KGWSCLKFEGPFDFGLTGILASVSQ-PLSD---- 89 (128)
T ss_pred EEEEcC-CceEEEEeeccc-----------CC------cceEec--CCeEEEEEeccccCCcchhhhhhhh-hHhh----
Confidence 345664 667777775542 11 355554 479999999998765 3444432 1222
Q ss_pred eeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhcc
Q 015320 211 EFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKS 255 (409)
Q Consensus 211 ~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag 255 (409)
+|+.+++.- .|.+. -+++..++.++-.++|.++|
T Consensus 90 -------~gigIFavS-tydtD---hiLVr~~dLekAv~~L~eaG 123 (128)
T COG3603 90 -------NGIGIFAVS-TYDTD---HILVREEDLEKAVKALEEAG 123 (128)
T ss_pred -------CCccEEEEE-eccCc---eEEEehhhHHHHHHHHHHcC
Confidence 244444432 23333 36677777777778888774
No 51
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.13 E-value=2.5e+02 Score=25.92 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=35.6
Q ss_pred CCeEEEE---eCCeEEEEEeCCChHHH---HhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeec
Q 015320 172 GDVSWHI---HDERSLLALQGPLAAPV---LQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPS 241 (409)
Q Consensus 172 ~~V~i~~---~~~~~~l~l~GP~a~~v---L~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~ 241 (409)
.+|++++ .++++.+.|.||.+..- +.+-++. +..++- + .-.++.+-|.--.++.||-+++.-
T Consensus 30 l~vk~eisvt~~~w~~itleGed~e~sanli~eefge-i~sl~~-----~--~~Gdv~vGrl~~l~~vgyg~yvdi 97 (247)
T COG4044 30 LDVKVEISVTKKQWAKITLEGEDEEVSANLIVEEFGE-IPSLSK-----V--EEGDVYVGRLIDLGKVGYGAYVDI 97 (247)
T ss_pred eeEEEEEEeecccceEEEEECccHHHHHHHHHHHhCC-CCcccc-----C--CCCcEEEEEEeeeccceeEEEccc
Confidence 4677654 36799999999986543 3222221 112211 1 112455666555678899888753
No 52
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=26.49 E-value=1.2e+02 Score=23.57 Aligned_cols=50 Identities=28% Similarity=0.286 Sum_probs=29.8
Q ss_pred EEEEEEeCCCCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECC
Q 015320 325 RRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRG 388 (409)
Q Consensus 325 rlv~l~~~~~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g 388 (409)
-+++ ++.+..+.+|+++ +|..+|.|.|--.. ++++- .+..|+.+-+.+.|
T Consensus 20 ~IvG-~V~~G~ik~G~~l---~G~~iG~I~sIe~~---~k~v~-------~A~~G~eVai~Ieg 69 (81)
T PF14578_consen 20 AIVG-EVLEGIIKPGYPL---DGRKIGRIKSIEDN---GKNVD-------EAKKGDEVAISIEG 69 (81)
T ss_dssp EEEE-EEEEEEEETT-EE---CSSCEEEEEEEEET---TEEES-------EEETT-EEEEEEET
T ss_pred eEEE-EEeeeEEeCCCcc---CCEEEEEEEEeEEC---CcCcc-------ccCCCCEEEEEEeC
Confidence 5566 6655566788888 77779999987543 23442 23456666555554
No 53
>PRK10807 paraquat-inducible protein B; Provisional
Probab=22.02 E-value=2.4e+02 Score=30.04 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=32.5
Q ss_pred CCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCc
Q 015320 334 PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGL 375 (409)
Q Consensus 334 ~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~ 375 (409)
..+..|++|+ -.|-.||+|++..+++.-....--++|+.+|
T Consensus 169 ~~L~~GaPV~-yrgi~VG~V~~~~l~~~~~~v~~~~fI~~~y 209 (547)
T PRK10807 169 GQLSPGDPVL-FRGYRVGSVETSTFDPQKRLMSYQLFINAPY 209 (547)
T ss_pred CCCCCCCceE-ECCcEEEEEEEEEecCCCCEEEEEEEEcchH
Confidence 4578899998 7999999999999987644444558888875
No 54
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=21.58 E-value=87 Score=32.24 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.2
Q ss_pred CCcEeEEEEeeeecCCCCceEEEE
Q 015320 346 QGNPIGEITSGGFSPCLKKNIAMG 369 (409)
Q Consensus 346 ~g~~vG~vtS~~~s~~l~~~iala 369 (409)
.+..+|.||+.+|||. ++.+|+|
T Consensus 478 ~n~~vg~vtc~aFSP~-sG~lAvG 500 (514)
T KOG2055|consen 478 SNTKVGHVTCMAFSPN-SGYLAVG 500 (514)
T ss_pred CCCcccceEEEEecCC-CceEEee
Confidence 3677999999999998 5678776
No 55
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=21.52 E-value=2.9e+02 Score=20.06 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=11.7
Q ss_pred CCCeEecCCCcEeE
Q 015320 338 SHSKVHDEQGNPIG 351 (409)
Q Consensus 338 ~g~~v~~~~g~~vG 351 (409)
.|+.|+ .||+.+|
T Consensus 11 ~gA~V~-vdg~~~G 23 (71)
T PF08308_consen 11 SGAEVY-VDGKYIG 23 (71)
T ss_pred CCCEEE-ECCEEec
Confidence 588999 8999999
No 56
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=20.13 E-value=1.7e+02 Score=21.45 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=27.5
Q ss_pred CCCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCe
Q 015320 333 GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 389 (409)
Q Consensus 333 ~~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~ 389 (409)
+.+++-|+.|++.+++.+|.|-.. +.+||+-.- ....|.|.+.+.
T Consensus 8 G~~lPfGA~v~~~~g~~~g~Vg~~----------G~vyl~~~~--~~~~L~V~w~~~ 52 (68)
T PF13953_consen 8 GKPLPFGASVSDEDGNNIGIVGQD----------GQVYLSGLP--PKGTLTVKWGDG 52 (68)
T ss_dssp SEE--TT-EEEETTSSEEEEB-GC----------GEEEEEEE---TCEEEEEESTSC
T ss_pred CCcCCCCcEEEcCCCCEEEEEcCC----------CEEEEECCC--CCcEEEEEECCC
Confidence 456678999997788988888644 244555432 345788887654
Done!