Query 015321
Match_columns 409
No_of_seqs 187 out of 667
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 05:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 2.2E-13 4.8E-18 97.4 1.4 44 233-294 1-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.3 1.2E-12 2.6E-17 104.1 2.9 56 231-294 18-73 (73)
3 KOG4628 Predicted E3 ubiquitin 99.2 2.4E-12 5.2E-17 129.1 2.7 51 233-300 230-280 (348)
4 COG5243 HRD1 HRD ubiquitin lig 99.1 6E-11 1.3E-15 120.4 3.0 76 210-298 270-345 (491)
5 PF12861 zf-Apc11: Anaphase-pr 99.1 1.7E-10 3.6E-15 96.0 4.9 64 231-299 20-83 (85)
6 COG5194 APC11 Component of SCF 99.0 4.7E-10 1E-14 93.1 3.5 63 232-299 20-82 (88)
7 PHA02929 N1R/p28-like protein; 98.9 8.7E-10 1.9E-14 105.9 3.2 56 231-299 173-228 (238)
8 cd00162 RING RING-finger (Real 98.9 1.4E-09 3E-14 74.1 3.0 45 234-297 1-45 (45)
9 COG5540 RING-finger-containing 98.8 2.5E-09 5.5E-14 106.4 2.3 51 231-298 322-372 (374)
10 KOG0802 E3 ubiquitin ligase [P 98.7 5.7E-09 1.2E-13 109.0 2.4 51 231-297 290-340 (543)
11 smart00184 RING Ring finger. E 98.7 1.7E-08 3.7E-13 66.3 3.0 39 235-293 1-39 (39)
12 KOG1493 Anaphase-promoting com 98.6 1E-08 2.2E-13 84.7 1.8 63 231-298 19-81 (84)
13 PF13923 zf-C3HC4_2: Zinc fing 98.6 9.4E-09 2E-13 72.2 1.2 39 235-293 1-39 (39)
14 KOG2930 SCF ubiquitin ligase, 98.6 9.4E-09 2E-13 88.9 1.5 65 230-298 44-108 (114)
15 PLN03208 E3 ubiquitin-protein 98.6 3.4E-08 7.4E-13 92.8 3.6 52 231-299 17-80 (193)
16 PF13920 zf-C3HC4_3: Zinc fing 98.5 4.1E-08 9E-13 72.1 1.8 47 232-299 2-49 (50)
17 PF15227 zf-C3HC4_4: zinc fing 98.5 7.7E-08 1.7E-12 69.7 2.6 42 235-293 1-42 (42)
18 PF00097 zf-C3HC4: Zinc finger 98.5 5.5E-08 1.2E-12 68.1 1.3 41 235-293 1-41 (41)
19 TIGR00599 rad18 DNA repair pro 98.4 1.6E-07 3.5E-12 96.1 3.9 69 210-299 2-72 (397)
20 PF14634 zf-RING_5: zinc-RING 98.4 2.9E-07 6.2E-12 66.5 3.7 44 234-295 1-44 (44)
21 KOG0320 Predicted E3 ubiquitin 98.3 3.2E-07 7E-12 85.7 3.1 51 230-299 129-179 (187)
22 smart00504 Ubox Modified RING 98.3 3.3E-07 7.2E-12 68.6 2.6 46 233-299 2-47 (63)
23 KOG1734 Predicted RING-contain 98.3 3E-07 6.6E-12 90.7 2.0 67 224-299 216-282 (328)
24 PHA02926 zinc finger-like prot 98.2 8.5E-07 1.8E-11 85.5 3.9 60 230-298 168-230 (242)
25 KOG0317 Predicted E3 ubiquitin 98.2 9.9E-07 2.1E-11 87.3 3.1 48 230-298 237-284 (293)
26 KOG0827 Predicted E3 ubiquitin 98.1 1E-06 2.2E-11 90.4 2.6 53 233-299 5-57 (465)
27 PF13445 zf-RING_UBOX: RING-ty 98.1 9.9E-07 2.2E-11 64.9 1.4 43 235-291 1-43 (43)
28 smart00744 RINGv The RING-vari 98.0 5.3E-06 1.1E-10 62.1 3.2 44 234-294 1-49 (49)
29 KOG0828 Predicted E3 ubiquitin 98.0 2.8E-06 6.1E-11 89.3 1.8 58 231-298 570-634 (636)
30 KOG0804 Cytoplasmic Zn-finger 97.9 3.8E-06 8.2E-11 87.3 2.4 51 229-298 172-222 (493)
31 KOG2177 Predicted E3 ubiquitin 97.8 1E-05 2.2E-10 70.9 2.4 45 230-295 11-55 (386)
32 TIGR00570 cdk7 CDK-activating 97.8 2E-05 4.3E-10 78.8 3.8 56 230-300 1-56 (309)
33 PF04564 U-box: U-box domain; 97.8 1.5E-05 3.1E-10 63.3 2.2 49 231-299 3-51 (73)
34 KOG0287 Postreplication repair 97.7 1.2E-05 2.5E-10 81.9 2.0 49 231-300 22-70 (442)
35 KOG0823 Predicted E3 ubiquitin 97.6 3.1E-05 6.7E-10 74.8 2.8 53 229-299 44-96 (230)
36 PF11793 FANCL_C: FANCL C-term 97.6 4.6E-06 1E-10 66.3 -2.3 57 232-299 2-67 (70)
37 KOG1941 Acetylcholine receptor 97.5 2.8E-05 6E-10 80.3 1.3 53 230-297 363-415 (518)
38 COG5574 PEX10 RING-finger-cont 97.5 5.2E-05 1.1E-09 74.6 2.6 50 229-298 212-262 (271)
39 KOG0825 PHD Zn-finger protein 97.5 2.6E-05 5.6E-10 85.7 -0.1 53 230-300 121-173 (1134)
40 KOG2164 Predicted E3 ubiquitin 97.4 7.2E-05 1.6E-09 78.9 1.8 51 232-299 186-237 (513)
41 KOG1645 RING-finger-containing 97.3 0.0001 2.2E-09 76.4 1.6 53 231-297 3-55 (463)
42 COG5219 Uncharacterized conser 97.2 0.00014 3.1E-09 81.4 1.7 56 230-297 1467-1522(1525)
43 PF10367 Vps39_2: Vacuolar sor 97.1 0.00012 2.6E-09 59.4 0.3 34 230-278 76-109 (109)
44 COG5432 RAD18 RING-finger-cont 97.1 0.00023 5E-09 71.5 2.3 48 231-299 24-71 (391)
45 KOG0978 E3 ubiquitin ligase in 96.9 0.00029 6.3E-09 76.9 1.1 51 231-301 642-692 (698)
46 KOG0824 Predicted E3 ubiquitin 96.9 0.00082 1.8E-08 67.6 3.4 82 231-332 6-90 (324)
47 KOG1940 Zn-finger protein [Gen 96.6 0.0013 2.7E-08 65.3 2.6 48 231-295 157-204 (276)
48 KOG4265 Predicted E3 ubiquitin 96.5 0.0018 3.9E-08 66.0 3.3 49 230-299 288-337 (349)
49 PF11789 zf-Nse: Zinc-finger o 96.5 0.0013 2.7E-08 51.0 1.5 44 231-292 10-53 (57)
50 KOG0311 Predicted E3 ubiquitin 96.5 0.0006 1.3E-08 69.7 -0.4 51 231-300 42-92 (381)
51 KOG2114 Vacuolar assembly/sort 96.2 0.0022 4.8E-08 71.4 1.9 50 226-298 834-883 (933)
52 KOG4159 Predicted E3 ubiquitin 95.9 0.003 6.6E-08 65.3 1.3 52 230-302 82-133 (398)
53 KOG1039 Predicted E3 ubiquitin 95.9 0.0045 9.8E-08 63.0 2.4 59 230-298 159-221 (344)
54 KOG4445 Uncharacterized conser 95.8 0.0031 6.8E-08 63.8 0.8 55 230-298 113-186 (368)
55 KOG1785 Tyrosine kinase negati 95.8 0.0046 9.9E-08 64.7 1.9 51 230-299 367-417 (563)
56 PF05883 Baculo_RING: Baculovi 95.5 0.0091 2E-07 54.0 2.3 36 231-280 25-66 (134)
57 KOG1428 Inhibitor of type V ad 95.4 0.0087 1.9E-07 70.1 2.6 37 262-298 3502-3544(3738)
58 KOG3039 Uncharacterized conser 95.3 0.011 2.4E-07 58.6 2.7 53 230-299 219-271 (303)
59 KOG0827 Predicted E3 ubiquitin 95.2 0.0014 3E-08 68.0 -4.2 51 232-299 196-246 (465)
60 KOG4185 Predicted E3 ubiquitin 95.1 0.014 3.1E-07 56.2 2.7 53 231-297 2-54 (296)
61 KOG2034 Vacuolar sorting prote 95.1 0.01 2.3E-07 66.4 2.0 37 230-281 815-851 (911)
62 KOG3970 Predicted E3 ubiquitin 95.0 0.018 3.8E-07 56.7 3.1 52 232-298 50-105 (299)
63 PF04641 Rtf2: Rtf2 RING-finge 94.9 0.017 3.6E-07 55.9 2.6 70 230-318 111-186 (260)
64 PHA02862 5L protein; Provision 94.8 0.022 4.7E-07 52.6 2.7 46 233-298 3-53 (156)
65 COG5152 Uncharacterized conser 94.7 0.014 2.9E-07 56.6 1.3 45 233-298 197-241 (259)
66 PF14835 zf-RING_6: zf-RING of 94.6 0.012 2.7E-07 47.5 0.7 46 232-299 7-52 (65)
67 KOG4172 Predicted E3 ubiquitin 94.5 0.013 2.9E-07 46.5 0.5 45 233-299 8-55 (62)
68 PHA02825 LAP/PHD finger-like p 94.1 0.043 9.3E-07 51.1 3.1 50 231-298 7-59 (162)
69 PF12906 RINGv: RING-variant d 93.9 0.013 2.7E-07 43.7 -0.6 42 235-293 1-47 (47)
70 PHA03096 p28-like protein; Pro 93.3 0.04 8.7E-07 54.9 1.5 54 233-297 179-233 (284)
71 KOG0297 TNF receptor-associate 93.2 0.055 1.2E-06 55.6 2.4 49 230-298 19-67 (391)
72 KOG4739 Uncharacterized protei 93.1 0.052 1.1E-06 53.0 1.9 33 260-298 16-48 (233)
73 KOG2660 Locus-specific chromos 92.6 0.037 8.1E-07 56.3 0.2 53 230-302 13-65 (331)
74 KOG1813 Predicted E3 ubiquitin 92.5 0.045 9.9E-07 55.2 0.7 46 232-298 241-286 (313)
75 KOG3800 Predicted E3 ubiquitin 91.8 0.14 3E-06 51.7 3.1 34 264-300 20-53 (300)
76 COG5222 Uncharacterized conser 91.7 0.11 2.3E-06 53.2 2.3 45 233-296 275-319 (427)
77 PF14570 zf-RING_4: RING/Ubox 91.4 0.16 3.6E-06 38.8 2.5 45 235-297 1-47 (48)
78 KOG2879 Predicted E3 ubiquitin 91.2 0.13 2.9E-06 51.6 2.4 51 230-298 237-287 (298)
79 KOG0309 Conserved WD40 repeat- 90.4 0.11 2.4E-06 58.1 1.1 53 230-291 1016-1068(1081)
80 COG5236 Uncharacterized conser 89.7 0.23 4.9E-06 51.7 2.5 49 230-299 59-109 (493)
81 KOG1571 Predicted E3 ubiquitin 89.2 0.13 2.8E-06 53.0 0.5 25 5-29 100-127 (355)
82 PF14447 Prok-RING_4: Prokaryo 88.6 0.18 4E-06 39.6 0.8 34 261-300 19-52 (55)
83 KOG1002 Nucleotide excision re 88.2 0.31 6.7E-06 53.0 2.4 69 213-298 513-586 (791)
84 KOG2066 Vacuolar assembly/sort 87.2 0.23 5E-06 55.7 0.7 50 231-295 783-832 (846)
85 KOG3268 Predicted E3 ubiquitin 87.0 0.42 9E-06 46.0 2.2 37 264-300 187-230 (234)
86 KOG3053 Uncharacterized conser 86.2 0.38 8.3E-06 48.2 1.7 58 229-300 17-84 (293)
87 KOG1952 Transcription factor N 86.2 0.38 8.3E-06 54.4 1.8 56 230-298 189-247 (950)
88 smart00249 PHD PHD zinc finger 85.4 0.53 1.1E-05 32.2 1.6 28 266-293 19-47 (47)
89 KOG0801 Predicted E3 ubiquitin 85.0 0.25 5.4E-06 46.8 -0.3 29 231-273 176-204 (205)
90 PF07800 DUF1644: Protein of u 83.5 0.97 2.1E-05 42.3 2.9 19 287-305 80-98 (162)
91 KOG1001 Helicase-like transcri 83.3 0.59 1.3E-05 51.7 1.6 48 233-300 455-502 (674)
92 PF08746 zf-RING-like: RING-li 83.0 0.53 1.2E-05 34.6 0.8 26 266-293 18-43 (43)
93 KOG3161 Predicted E3 ubiquitin 82.7 0.49 1.1E-05 52.5 0.7 87 230-336 9-104 (861)
94 COG5220 TFB3 Cdk activating ki 82.3 0.57 1.2E-05 46.8 1.0 52 230-298 8-64 (314)
95 KOG1814 Predicted E3 ubiquitin 81.2 0.9 1.9E-05 48.0 2.0 54 230-297 182-239 (445)
96 KOG1829 Uncharacterized conser 81.0 0.75 1.6E-05 50.2 1.4 53 230-298 509-561 (580)
97 KOG0269 WD40 repeat-containing 80.5 0.83 1.8E-05 51.3 1.5 29 266-298 798-828 (839)
98 KOG1609 Protein involved in mR 79.4 1.4 3E-05 42.0 2.5 54 230-298 76-134 (323)
99 PF10272 Tmpp129: Putative tra 79.0 1.5 3.3E-05 45.3 2.8 33 266-298 310-351 (358)
100 PF14446 Prok-RING_1: Prokaryo 78.2 1.8 3.8E-05 34.1 2.3 36 231-279 4-39 (54)
101 PF13901 DUF4206: Domain of un 77.4 1.4 3E-05 41.6 1.8 49 230-296 150-198 (202)
102 KOG2932 E3 ubiquitin ligase in 76.1 1.4 2.9E-05 45.6 1.4 45 232-298 90-134 (389)
103 KOG4275 Predicted E3 ubiquitin 75.1 0.75 1.6E-05 47.0 -0.7 42 232-298 300-342 (350)
104 KOG1100 Predicted E3 ubiquitin 70.7 1.5 3.2E-05 42.0 0.2 30 261-298 170-200 (207)
105 KOG0782 Predicted diacylglycer 69.2 7.6 0.00016 43.3 5.1 96 118-215 63-174 (1004)
106 COG5183 SSM4 Protein involved 68.0 3.7 8E-05 47.0 2.6 52 230-298 10-66 (1175)
107 KOG4692 Predicted E3 ubiquitin 67.9 3.1 6.7E-05 43.8 1.8 47 230-298 420-467 (489)
108 KOG2817 Predicted E3 ubiquitin 67.0 3.8 8.2E-05 43.1 2.3 52 231-297 333-384 (394)
109 KOG3113 Uncharacterized conser 65.8 3.9 8.5E-05 41.2 2.0 53 230-301 109-161 (293)
110 KOG0298 DEAD box-containing he 65.7 2.4 5.1E-05 50.2 0.6 48 231-298 1152-1199(1394)
111 PF00628 PHD: PHD-finger; Int 65.0 0.62 1.3E-05 33.8 -2.8 30 266-295 19-50 (51)
112 COG5175 MOT2 Transcriptional r 58.6 7.1 0.00015 41.0 2.4 52 231-298 13-64 (480)
113 PF04710 Pellino: Pellino; In 56.1 3.7 8.1E-05 43.3 0.0 61 232-298 277-339 (416)
114 KOG3899 Uncharacterized conser 52.5 8.6 0.00019 39.7 1.9 32 267-298 325-365 (381)
115 PF02891 zf-MIZ: MIZ/SP-RING z 50.1 9.3 0.0002 28.9 1.3 33 261-296 15-50 (50)
116 KOG4367 Predicted Zn-finger pr 49.5 11 0.00024 40.8 2.2 36 231-283 3-38 (699)
117 KOG1812 Predicted E3 ubiquitin 48.9 8.3 0.00018 40.0 1.2 56 230-298 144-203 (384)
118 KOG2068 MOT2 transcription fac 48.9 12 0.00027 38.6 2.3 50 233-299 250-299 (327)
119 KOG3002 Zn finger protein [Gen 48.7 14 0.0003 37.5 2.6 44 230-298 46-91 (299)
120 PF04710 Pellino: Pellino; In 47.3 6.3 0.00014 41.7 0.0 38 262-299 360-402 (416)
121 KOG0825 PHD Zn-finger protein 46.5 11 0.00023 43.4 1.6 56 230-298 94-154 (1134)
122 KOG3842 Adaptor protein Pellin 44.2 23 0.00049 37.1 3.4 38 262-299 373-415 (429)
123 PF14569 zf-UDP: Zinc-binding 43.2 24 0.00052 29.9 2.8 57 230-299 7-63 (80)
124 KOG3842 Adaptor protein Pellin 43.1 17 0.00038 37.9 2.4 59 231-297 289-351 (429)
125 cd00350 rubredoxin_like Rubred 42.7 7.7 0.00017 26.9 -0.1 10 288-297 18-27 (33)
126 PF05290 Baculo_IE-1: Baculovi 42.5 23 0.00051 32.7 2.9 54 231-299 79-133 (140)
127 KOG0826 Predicted E3 ubiquitin 42.4 13 0.00028 38.7 1.4 49 230-298 298-346 (357)
128 PF05605 zf-Di19: Drought indu 40.8 23 0.00049 26.6 2.1 12 232-243 2-13 (54)
129 cd04718 BAH_plant_2 BAH, or Br 39.9 12 0.00026 34.7 0.7 29 271-299 2-30 (148)
130 KOG4185 Predicted E3 ubiquitin 38.4 6.5 0.00014 38.1 -1.4 52 231-296 206-265 (296)
131 KOG0802 E3 ubiquitin ligase [P 37.9 15 0.00033 39.3 1.2 44 231-299 478-521 (543)
132 PLN02915 cellulose synthase A 37.8 31 0.00066 40.6 3.5 56 230-298 13-68 (1044)
133 KOG3005 GIY-YIG type nuclease 37.3 30 0.00065 35.1 3.0 56 233-298 183-243 (276)
134 PF03854 zf-P11: P-11 zinc fin 35.8 13 0.00028 29.0 0.2 31 264-298 15-46 (50)
135 KOG4362 Transcriptional regula 35.7 15 0.00032 41.3 0.7 50 231-298 20-69 (684)
136 COG5109 Uncharacterized conser 35.0 23 0.00049 37.0 1.8 53 230-297 334-386 (396)
137 PLN02189 cellulose synthase 34.1 29 0.00063 40.8 2.6 56 230-298 32-87 (1040)
138 KOG4718 Non-SMC (structural ma 30.3 26 0.00057 34.7 1.3 49 231-299 180-228 (235)
139 PLN02436 cellulose synthase A 29.8 42 0.0009 39.7 2.9 57 229-298 33-89 (1094)
140 KOG2979 Protein involved in DN 28.8 28 0.00062 35.0 1.3 48 239-293 172-219 (262)
141 PLN02638 cellulose synthase A 28.8 53 0.0012 38.9 3.6 57 229-298 14-70 (1079)
142 PF06676 DUF1178: Protein of u 28.3 12 0.00027 34.5 -1.2 39 266-309 9-54 (148)
143 KOG4577 Transcription factor L 28.3 12 0.00025 38.7 -1.5 15 266-280 111-125 (383)
144 PF04423 Rad50_zn_hook: Rad50 27.2 13 0.00029 27.9 -1.0 34 275-309 8-41 (54)
145 KOG1701 Focal adhesion adaptor 27.0 10 0.00022 40.6 -2.2 41 233-302 335-375 (468)
146 KOG1815 Predicted E3 ubiquitin 25.0 49 0.0011 34.6 2.3 55 230-300 68-128 (444)
147 PF12088 DUF3565: Protein of u 23.6 41 0.00088 27.3 1.0 25 257-281 7-31 (61)
148 PLN02400 cellulose synthase 22.7 61 0.0013 38.4 2.6 57 229-298 33-89 (1085)
149 PLN02195 cellulose synthase A 22.0 66 0.0014 37.8 2.7 55 231-298 5-59 (977)
150 KOG2231 Predicted E3 ubiquitin 21.5 56 0.0012 36.9 1.9 50 234-300 2-54 (669)
151 PRK11827 hypothetical protein; 20.1 47 0.001 26.6 0.7 32 288-319 9-47 (60)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.35 E-value=2.2e-13 Score=97.42 Aligned_cols=44 Identities=34% Similarity=0.749 Sum_probs=36.4
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 294 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR 294 (409)
..|+||++.|. +...+.+|+|||+||.+||.+|+.+. .+||+||
T Consensus 1 d~C~IC~~~~~--------------~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFE--------------DGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHH--------------TTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhc--------------CCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 36999999997 33457789999999999999999875 4999997
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.29 E-value=1.2e-12 Score=104.07 Aligned_cols=56 Identities=25% Similarity=0.558 Sum_probs=40.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 294 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR 294 (409)
....|+||++.|...++..... ++.-.+..++|||+||.+||.+||...+ +||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~----~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAP----QDECPIVWGPCGHIFHFHCISQWLKQNN----TCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHC----TTTS-EEEETTSEEEEHHHHHHHHTTSS----B-TTSS
T ss_pred cCCcccccChhhhChhhhhcCC----ccccceEecccCCCEEHHHHHHHHhcCC----cCCCCC
Confidence 3456999999997665544332 1223456779999999999999997764 999997
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.4e-12 Score=129.06 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=44.7
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
..|+||+|+|. +.+.+++|||.|.||..||+.||.+.. ..||+||.++...
T Consensus 230 ~~CaIClEdY~--------------~GdklRiLPC~H~FH~~CIDpWL~~~r---~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYE--------------KGDKLRILPCSHKFHVNCIDPWLTQTR---TFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccc--------------cCCeeeEecCCCchhhccchhhHhhcC---ccCCCCCCcCCCC
Confidence 38999999998 667899999999999999999998764 4699999988643
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6e-11 Score=120.36 Aligned_cols=76 Identities=22% Similarity=0.430 Sum_probs=52.6
Q ss_pred hhcccCCCCCcccccCCCCCCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCC
Q 015321 210 DFADVSEPFESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPS 289 (409)
Q Consensus 210 d~~di~e~~~~es~~~~~s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dpt 289 (409)
|+-+..+....|.++ .++..|.||.+++-.. .+..+..+-......|||||+||.+||..|+++++ +
T Consensus 270 dl~~~~~t~t~eql~-----n~D~~C~ICmde~~h~----~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ----T 336 (491)
T COG5243 270 DLNAMYPTATEEQLT-----NSDRTCTICMDEMFHP----DHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ----T 336 (491)
T ss_pred HHHhhcchhhhhhhc-----CCCCeEEEecccccCC----CCccCcccccCCcccccccceeeHHHHHHHHHhcc----C
Confidence 444444444444443 4778999999996521 11222222333467899999999999999999876 9
Q ss_pred CcccccCcc
Q 015321 290 CPICLRLQE 298 (409)
Q Consensus 290 CPLCR~~~~ 298 (409)
|||||.++.
T Consensus 337 CPICr~p~i 345 (491)
T COG5243 337 CPICRRPVI 345 (491)
T ss_pred CCcccCccc
Confidence 999999953
No 5
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.06 E-value=1.7e-10 Score=96.04 Aligned_cols=64 Identities=22% Similarity=0.464 Sum_probs=50.1
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.++.|+||...|...+| ...++..+.+. ....|+|.||.+||.+||..... +..||+||..+.-
T Consensus 20 ~dd~CgICr~~fdg~Cp---~Ck~Pgd~Cpl-v~g~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCP---DCKFPGDDCPL-VWGKCSHNFHMHCILKWLSTQSS-KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCC---CccCCCCCCce-eeccCccHHHHHHHHHHHccccC-CCCCCCcCCeeee
Confidence 47889999999997765 44556555554 36689999999999999987532 3699999998763
No 6
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.95 E-value=4.7e-10 Score=93.14 Aligned_cols=63 Identities=17% Similarity=0.319 Sum_probs=53.5
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+.|+||...+...+|++.......++. ++....|.|+||.+||.+||..+. .||+|++.+.-
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC-~v~wG~CnHaFH~HCI~rWL~Tk~----~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDEC-PVVWGVCNHAFHDHCIYRWLDTKG----VCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcc-eEEEEecchHHHHHHHHHHHhhCC----CCCCCCceeEE
Confidence 4789999999999999998877555444 566889999999999999998864 89999999864
No 7
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.88 E-value=8.7e-10 Score=105.92 Aligned_cols=56 Identities=21% Similarity=0.493 Sum_probs=40.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|+||++.+.+..+ .......+++|||+||.+||.+|+... .+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~---------~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEI---------KNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCcc---------ccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCEeeE
Confidence 56789999998762110 001112334799999999999999754 599999998763
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=1.4e-09 Score=74.09 Aligned_cols=45 Identities=27% Similarity=0.675 Sum_probs=35.6
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 234 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 234 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.|+||++.+. ..+.+++|||.||.+||+.|+.... ..||+|+..+
T Consensus 1 ~C~iC~~~~~----------------~~~~~~~C~H~~c~~C~~~~~~~~~---~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR----------------EPVVLLPCGHVFCRSCIDKWLKSGK---NTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh----------------CceEecCCCChhcHHHHHHHHHhCc---CCCCCCCCcC
Confidence 4999998874 1344667999999999999998633 5799999763
No 9
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.5e-09 Score=106.43 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=42.3
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+-.|+||++.|. ..+.+.+|||.|+||..||++|+..-. ..||+||..+.
T Consensus 322 ~GveCaICms~fi--------------K~d~~~vlPC~H~FH~~Cv~kW~~~y~---~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFI--------------KNDRLRVLPCDHRFHVGCVDKWLLGYS---NKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhc--------------ccceEEEeccCceechhHHHHHHhhhc---ccCCccCCCCC
Confidence 5678999999997 345688999999999999999997322 47999998764
No 10
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.7e-09 Score=108.96 Aligned_cols=51 Identities=29% Similarity=0.604 Sum_probs=42.2
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
....|.||.+.|.. ++...+.+|+|||+||.+||.+|++..+ +||+||..+
T Consensus 290 ~~~~C~IC~e~l~~------------~~~~~~~rL~C~Hifh~~CL~~W~er~q----tCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHS------------GHNITPKRLPCGHIFHDSCLRSWFERQQ----TCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhcc------------ccccccceeecccchHHHHHHHHHHHhC----cCCcchhhh
Confidence 47889999999981 1223477999999999999999998865 999999954
No 11
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.66 E-value=1.7e-08 Score=66.35 Aligned_cols=39 Identities=33% Similarity=0.763 Sum_probs=30.9
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015321 235 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 235 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
|+||++... ...+++|||+||.+|++.|+...+ ..||+|
T Consensus 1 C~iC~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~~~---~~CP~C 39 (39)
T smart00184 1 CPICLEELK-----------------DPVVLPCGHTFCRSCIRKWLKSGN---NTCPIC 39 (39)
T ss_pred CCcCccCCC-----------------CcEEecCCChHHHHHHHHHHHhCc---CCCCCC
Confidence 788977632 355789999999999999997332 579998
No 12
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1e-08 Score=84.72 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=50.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
..++|+||...|...+| ...++.+|.|.| .--|.|.||++||.+|+..... +..||+||..+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp---~Ck~PgDdCPLv-~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCP---DCKLPGDDCPLV-WGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCC---CCcCCCCCCccH-HHHHHHHHHHHHHHHHhcCccc-cccCCcchheeE
Confidence 34589999999997766 456777777653 4489999999999999986543 368999999875
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.64 E-value=9.4e-09 Score=72.25 Aligned_cols=39 Identities=44% Similarity=0.954 Sum_probs=31.6
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015321 235 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 235 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
|+||++.+. + .+.+++|||+|+.+||++|+.++ ..||+|
T Consensus 1 C~iC~~~~~--------------~--~~~~~~CGH~fC~~C~~~~~~~~----~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--------------D--PVVVTPCGHSFCKECIEKYLEKN----PKCPVC 39 (39)
T ss_dssp ETTTTSB-S--------------S--EEEECTTSEEEEHHHHHHHHHCT----SB-TTT
T ss_pred CCCCCCccc--------------C--cCEECCCCCchhHHHHHHHHHCc----CCCcCC
Confidence 899998876 2 34588999999999999999873 589998
No 14
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.4e-09 Score=88.93 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=53.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+..++|+||...+...+.++....-...+.-.|+...|.|.||.+||.+||..++ .||||.+++.
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~----vCPLdn~eW~ 108 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRN----VCPLDNKEWV 108 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcC----cCCCcCccee
Confidence 4667899999999888888876553333444677889999999999999998876 8999999886
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.58 E-value=3.4e-08 Score=92.75 Aligned_cols=52 Identities=29% Similarity=0.664 Sum_probs=39.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC------------CCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT------------QKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~------------~~~dptCPLCR~~~~ 298 (409)
....|+||++.+. + ..+++|||+|+..||.+|+... .+..+.||+|+..+.
T Consensus 17 ~~~~CpICld~~~--------------d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVR--------------D---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCC--------------C---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 4578999998875 1 2357999999999999998521 123468999999986
Q ss_pred c
Q 015321 299 E 299 (409)
Q Consensus 299 ~ 299 (409)
.
T Consensus 80 ~ 80 (193)
T PLN03208 80 E 80 (193)
T ss_pred h
Confidence 3
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.51 E-value=4.1e-08 Score=72.09 Aligned_cols=47 Identities=32% Similarity=0.648 Sum_probs=37.1
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
...|.||++... .+..+||||. |...|+++|+... ..||+||+.+..
T Consensus 2 ~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~~~~~----~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR-----------------DVVLLPCGHLCFCEECAERLLKRK----KKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS-----------------SEEEETTCEEEEEHHHHHHHHHTT----SBBTTTTBB-SE
T ss_pred cCCCccCCccCC-----------------ceEEeCCCChHHHHHHhHHhcccC----CCCCcCChhhcC
Confidence 457999998754 3568899999 9999999999844 589999998753
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.48 E-value=7.7e-08 Score=69.71 Aligned_cols=42 Identities=33% Similarity=0.680 Sum_probs=30.9
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015321 235 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 235 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
|+||++.|. ....|+|||+|-..||++|..+.+.....||+|
T Consensus 1 CpiC~~~~~-----------------~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-----------------DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-----------------SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-----------------CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999997 133789999999999999998765444689998
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.46 E-value=5.5e-08 Score=68.07 Aligned_cols=41 Identities=29% Similarity=0.758 Sum_probs=33.0
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015321 235 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 235 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
|+||++.+.+ .+.+++|||.|+.+||.+|+.... ...||+|
T Consensus 1 C~iC~~~~~~----------------~~~~~~C~H~fC~~C~~~~~~~~~--~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED----------------PVILLPCGHSFCRDCLRKWLENSG--SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS----------------EEEETTTSEEEEHHHHHHHHHHTS--SSBTTTT
T ss_pred CCcCCccccC----------------CCEEecCCCcchHHHHHHHHHhcC--CccCCcC
Confidence 8999998861 235789999999999999998422 3689998
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=1.6e-07 Score=96.11 Aligned_cols=69 Identities=25% Similarity=0.613 Sum_probs=48.2
Q ss_pred hhcccCCCCCcccccCCC--CCCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCC
Q 015321 210 DFADVSEPFESESFGQSY--VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSD 287 (409)
Q Consensus 210 d~~di~e~~~~es~~~~~--s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~d 287 (409)
|..||++.=|-.....+. .......|+||++.|. + ++ +++|||.|+..||..|+...
T Consensus 2 ~~~di~D~tDw~~t~~~~l~~Le~~l~C~IC~d~~~--------------~-Pv--itpCgH~FCs~CI~~~l~~~---- 60 (397)
T TIGR00599 2 DELDITDSSDWLTTPIPSLYPLDTSLRCHICKDFFD--------------V-PV--LTSCSHTFCSLCIRRCLSNQ---- 60 (397)
T ss_pred CcccCCCchhhccCCcccccccccccCCCcCchhhh--------------C-cc--CCCCCCchhHHHHHHHHhCC----
Confidence 334555554443333221 2246678999999886 1 22 67999999999999999764
Q ss_pred CCCcccccCccc
Q 015321 288 PSCPICLRLQEE 299 (409)
Q Consensus 288 ptCPLCR~~~~~ 299 (409)
..||+|+..+..
T Consensus 61 ~~CP~Cr~~~~~ 72 (397)
T TIGR00599 61 PKCPLCRAEDQE 72 (397)
T ss_pred CCCCCCCCcccc
Confidence 479999999864
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.40 E-value=2.9e-07 Score=66.51 Aligned_cols=44 Identities=32% Similarity=0.749 Sum_probs=35.1
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015321 234 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 295 (409)
Q Consensus 234 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 295 (409)
.|.||.+.|. +.....+++|||+|...||+++... ...||+|++
T Consensus 1 ~C~~C~~~~~--------------~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS--------------EERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCcccc--------------CCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 4899999984 2234678899999999999999822 258999985
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.2e-07 Score=85.71 Aligned_cols=51 Identities=29% Similarity=0.745 Sum_probs=41.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.....|+||++.+.++.|. ...|||||..+||..-+.+.. .||+|++.+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~v---------------sTkCGHvFC~~Cik~alk~~~----~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV---------------STKCGHVFCSQCIKDALKNTN----KCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhcccc---------------ccccchhHHHHHHHHHHHhCC----CCCCcccccch
Confidence 4557899999999864431 248999999999999998875 89999997754
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.32 E-value=3.3e-07 Score=68.59 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=38.0
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
..|+||++.+. + + .+++|||+|..+||++|+.+. .+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~--------------~-P--v~~~~G~v~~~~~i~~~~~~~----~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMK--------------D-P--VILPSGQTYERRAIEKWLLSH----GTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCC--------------C-C--EECCCCCEEeHHHHHHHHHHC----CCCCCCcCCCCh
Confidence 46999999986 2 2 356999999999999999763 589999988853
No 23
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3e-07 Score=90.72 Aligned_cols=67 Identities=24% Similarity=0.443 Sum_probs=47.2
Q ss_pred cCCCCCCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 224 GQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 224 ~~~~s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
|.|....++..|+||.+.+.... . ..+-.+..-.|.|+|+||+.||.-|---.++ ++||-|+..++-
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s~--~-----eegvienty~LsCnHvFHEfCIrGWcivGKk--qtCPYCKekVdl 282 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVSV--D-----EEGVIENTYKLSCNHVFHEFCIRGWCIVGKK--QTCPYCKEKVDL 282 (328)
T ss_pred CCCCCCCCcchhHhhcchheeec--c-----hhhhhhhheeeecccchHHHhhhhheeecCC--CCCchHHHHhhH
Confidence 34555568889999998886110 0 0111234668899999999999999655442 699999998874
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=98.23 E-value=8.5e-07 Score=85.54 Aligned_cols=60 Identities=27% Similarity=0.604 Sum_probs=41.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCC--CCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQ--KSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~--~~dptCPLCR~~~~ 298 (409)
+.+..|+||++...++... .+ ..-++| +|+|+|+..||.+|....+ .....||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~--------~e-RrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLE--------ND-RYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCcccccccccc--------cc-ccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4678899999887532110 01 123455 7999999999999987432 11246999999876
No 25
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=9.9e-07 Score=87.26 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=39.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.....|.||++.-. + ....||||+|.-.||..|+.++. .||+||....
T Consensus 237 ~a~~kC~LCLe~~~--------------~---pSaTpCGHiFCWsCI~~w~~ek~----eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRS--------------N---PSATPCGHIFCWSCILEWCSEKA----ECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCC--------------C---CCcCcCcchHHHHHHHHHHcccc----CCCcccccCC
Confidence 45678999998854 1 23569999999999999998864 7999998764
No 26
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1e-06 Score=90.35 Aligned_cols=53 Identities=28% Similarity=0.568 Sum_probs=37.8
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
..|.|| .++. +.+.++..+-.|||+||..||.+|+..... +..||+|+-.+++
T Consensus 5 A~C~Ic-~d~~------------p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps-~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHIC-IDGR------------PNDHELGPIGTCGHIFHTTCLTQWFEGDPS-NRGCPICQIKLQE 57 (465)
T ss_pred ceeeEe-ccCC------------ccccccccccchhhHHHHHHHHHHHccCCc-cCCCCceeecccc
Confidence 469999 5554 123344445579999999999999987542 1479999955554
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.12 E-value=9.9e-07 Score=64.87 Aligned_cols=43 Identities=33% Similarity=0.783 Sum_probs=23.3
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCc
Q 015321 235 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCP 291 (409)
Q Consensus 235 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCP 291 (409)
|+||.+ |.. +.....+|+|||+|-.+||++++.+.......||
T Consensus 1 CpIc~e-~~~-------------~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FST-------------EENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----T-------------TSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccC-------------CCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 762 2223558999999999999999986533346787
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.99 E-value=5.3e-06 Score=62.15 Aligned_cols=44 Identities=30% Similarity=0.597 Sum_probs=32.6
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccc
Q 015321 234 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICL 294 (409)
Q Consensus 234 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR 294 (409)
.|.||++..+ + ...-++||. |.+|..||++|+.+.. ..+||+|.
T Consensus 1 ~CrIC~~~~~--------------~-~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD--------------E-GDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCC--------------C-CCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 4899987222 1 233477985 9999999999998764 25899995
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.8e-06 Score=89.32 Aligned_cols=58 Identities=29% Similarity=0.508 Sum_probs=39.7
Q ss_pred CcccccccccchhccCCCcccccccCCCCCC-------ceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPV-------VGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~v-------VaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+...|+||+.++.-+.- ...++.. -.+.||.|+||..||++|....+ ..||+||..+.
T Consensus 570 ~t~dC~ICMt~I~l~~~-------~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk---l~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRST-------GSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK---LICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeec-------cCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc---ccCCccCCCCC
Confidence 56789999988762210 0111111 22449999999999999998543 57999998764
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.95 E-value=3.8e-06 Score=87.34 Aligned_cols=51 Identities=25% Similarity=0.560 Sum_probs=40.3
Q ss_pred CCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 229 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 229 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
..+..+|+|||+-+.+ +..-+....|.|.||..||.+|.. .+||+||....
T Consensus 172 ~tELPTCpVCLERMD~-------------s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDS-------------STTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCc-------------cccceeeeecccccchHHHhhccc------CcChhhhhhcC
Confidence 3678899999999872 333344557999999999999975 48999998654
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1e-05 Score=70.92 Aligned_cols=45 Identities=29% Similarity=0.809 Sum_probs=37.8
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 295 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 295 (409)
.+...|+||++.|. + + .+|+|||.|-..||..++. . ...||.|+.
T Consensus 11 ~~~~~C~iC~~~~~--------------~-p--~~l~C~H~~c~~C~~~~~~-~---~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFR--------------E-P--VLLPCGHNFCRACLTRSWE-G---PLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhh--------------c-C--ccccccchHhHHHHHHhcC-C---CcCCcccCC
Confidence 46778999999998 2 2 5889999999999999987 2 268999994
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=2e-05 Score=78.84 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=39.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
|++..|+||+..-.- +.++. .-+.+|||.|...||+..+.... ..||.|+..+...
T Consensus 1 md~~~CP~Ck~~~y~-----------np~~k-l~i~~CGH~~C~sCv~~l~~~~~---~~CP~C~~~lrk~ 56 (309)
T TIGR00570 1 MDDQGCPRCKTTKYR-----------NPSLK-LMVNVCGHTLCESCVDLLFVRGS---GSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCCcCCCCCcc-----------Ccccc-cccCCCCCcccHHHHHHHhcCCC---CCCCCCCCccchh
Confidence 467889999875320 01221 12228999999999999876543 5899999988643
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.75 E-value=1.5e-05 Score=63.29 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=36.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||.+.+. | ..+++|||+|-..||++|+.+.. .+||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~--------------d---PVi~~~G~tyer~~I~~~l~~~~---~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMR--------------D---PVILPSGHTYERSAIERWLEQNG---GTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-S--------------S---EEEETTSEEEEHHHHHHHHCTTS---SB-TTT-SB-SG
T ss_pred cccCCcCcCcHhh--------------C---ceeCCcCCEEcHHHHHHHHHcCC---CCCCCCCCcCCc
Confidence 4578999999987 1 23679999999999999998833 699999988764
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.75 E-value=1.2e-05 Score=81.88 Aligned_cols=49 Identities=27% Similarity=0.771 Sum_probs=41.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
+...|.||.+.|. +..+.||+|.|..-||...|... +.||+|+..+.|.
T Consensus 22 ~lLRC~IC~eyf~-----------------ip~itpCsHtfCSlCIR~~L~~~----p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-----------------IPMITPCSHTFCSLCIRKFLSYK----PQCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhc-----------------CceeccccchHHHHHHHHHhccC----CCCCceecccchh
Confidence 5678999999987 23355999999999999999764 7999999999764
No 35
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.1e-05 Score=74.81 Aligned_cols=53 Identities=28% Similarity=0.582 Sum_probs=41.2
Q ss_pred CCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 229 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 229 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+.....|-||++.-. .++ |..|||.|.--||-|||.... ....||+|+..+..
T Consensus 44 ~~~~FdCNICLd~ak---------------dPV--vTlCGHLFCWpClyqWl~~~~-~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK---------------DPV--VTLCGHLFCWPCLYQWLQTRP-NSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccC---------------CCE--EeecccceehHHHHHHHhhcC-CCeeCCcccccccc
Confidence 457789999997744 123 558999999999999997643 23479999999974
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.63 E-value=4.6e-06 Score=66.34 Aligned_cols=57 Identities=28% Similarity=0.551 Sum_probs=24.8
Q ss_pred cccccccccchhccCCCcccccccCCCCCCcee--ecCCCHhhHHHHHhhccCCCC----CC---CCCcccccCccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGV--LSCRHVFHAECLEQTTPKTQK----SD---PSCPICLRLQEE 299 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaV--LPCGHVFHaeCLeqWL~k~~~----~d---ptCPLCR~~~~~ 299 (409)
...|+||...+.+ .+..+.+.= -.|+++||..||-+||..... .. .+||.|+..+..
T Consensus 2 ~~~C~IC~~~~~~-----------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLD-----------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-T-----------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecC-----------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 3579999877541 112222111 169999999999999874211 11 369999998753
No 37
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.55 E-value=2.8e-05 Score=80.32 Aligned_cols=53 Identities=30% Similarity=0.753 Sum_probs=41.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
..+..|..|.+.+-.+ .+....|||.|+||+.|+.+.|.++. +.+||-||+..
T Consensus 363 e~~L~Cg~CGe~~Glk-------------~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLK-------------NERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCC-------------cccccccchhHHHHHHHHHHHHHhCC--CCCCccHHHHH
Confidence 3567899999988732 12456899999999999999997654 46899999443
No 38
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=5.2e-05 Score=74.64 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=39.6
Q ss_pred CCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHh-hccCCCCCCCCCcccccCcc
Q 015321 229 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ-TTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 229 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeq-WL~k~~~~dptCPLCR~~~~ 298 (409)
+.....|.||++.-. +..-++|||+|...||-. |+.++- .-||+||..+.
T Consensus 212 p~~d~kC~lC~e~~~-----------------~ps~t~CgHlFC~~Cl~~~~t~~k~---~~CplCRak~~ 262 (271)
T COG5574 212 PLADYKCFLCLEEPE-----------------VPSCTPCGHLFCLSCLLISWTKKKY---EFCPLCRAKVY 262 (271)
T ss_pred cccccceeeeecccC-----------------CcccccccchhhHHHHHHHHHhhcc---ccCchhhhhcc
Confidence 356788999998754 234569999999999999 987653 24999998765
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.47 E-value=2.6e-05 Score=85.74 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
-....|++|+..+. |.-+....+|+|+||++||+.|..-.+ +||+|+..+.+.
T Consensus 121 ~~~~~CP~Ci~s~~--------------DqL~~~~k~c~H~FC~~Ci~sWsR~aq----TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCN--------------DQLEESEKHTAHYFCEECVGSWSRCAQ----TCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHH--------------HHhhccccccccccHHHHhhhhhhhcc----cCchhhhhhhee
Confidence 35567999998876 333455568999999999999987665 999999999754
No 40
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=7.2e-05 Score=78.89 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=38.1
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-CCCCCCCcccccCccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQEE 299 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-~~~dptCPLCR~~~~~ 299 (409)
...|+||+++-. ++....|||+|.-.||-+.+... .+.-..||||+..+.-
T Consensus 186 ~~~CPICL~~~~-----------------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-----------------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-----------------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 788999997743 22233699999999998887654 2223579999998864
No 41
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0001 Score=76.44 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=41.3
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.+.+|+||++.++- . ....+-.|.|||.|-.+||+.||-| +....||.|....
T Consensus 3 ~g~tcpiclds~~~-----------~-g~hr~vsl~cghlFgs~cie~wl~k--~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTT-----------A-GNHRIVSLQCGHLFGSQCIEKWLGK--KTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeee-----------c-CceEEeeecccccccHHHHHHHHhh--hhhhhCcccCChh
Confidence 46789999999871 1 2245668899999999999999963 3346899998765
No 42
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.19 E-value=0.00014 Score=81.37 Aligned_cols=56 Identities=25% Similarity=0.611 Sum_probs=39.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.....|+||..-|.- -.+ ..|.-+-..|.|-||..||-+|+.... ..+||+||..+
T Consensus 1467 sG~eECaICYsvL~~-----vdr-----~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDM-----VDR-----SLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHH-----Hhc-----cCCccccchhhhhhhHHHHHHHHHhcC--CCCCCcccccc
Confidence 356789999877761 001 122223336999999999999998765 36899999765
No 43
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.13 E-value=0.00012 Score=59.40 Aligned_cols=34 Identities=32% Similarity=0.823 Sum_probs=28.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHh
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ 278 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeq 278 (409)
.+...|+||.+.|. . .+..+.||||+||..|+++
T Consensus 76 ~~~~~C~vC~k~l~--------------~-~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLG--------------N-SVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCC--------------C-ceEEEeCCCeEEecccccC
Confidence 35677999999986 2 4678999999999999863
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.13 E-value=0.00023 Score=71.53 Aligned_cols=48 Identities=25% Similarity=0.667 Sum_probs=39.3
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|-||.+.|. +....+|||.|..-||...|... +-||+||.+..+
T Consensus 24 s~lrC~IC~~~i~-----------------ip~~TtCgHtFCslCIR~hL~~q----p~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRIS-----------------IPCETTCGHTFCSLCIRRHLGTQ----PFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheee-----------------cceecccccchhHHHHHHHhcCC----CCCccccccHHh
Confidence 4568999998886 22245899999999999999764 689999998854
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00029 Score=76.95 Aligned_cols=51 Identities=27% Similarity=0.605 Sum_probs=41.1
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 301 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~ 301 (409)
....|++|..... .+.+..|||+|..+|++.-+..++ -.||.|...++.++
T Consensus 642 ~~LkCs~Cn~R~K-----------------d~vI~kC~H~FC~~Cvq~r~etRq---RKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK-----------------DAVITKCGHVFCEECVQTRYETRQ---RKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchh-----------------hHHHHhcchHHHHHHHHHHHHHhc---CCCCCCCCCCCccc
Confidence 4578999985544 233568999999999999998876 58999999998654
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00082 Score=67.58 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=56.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCCCchh-hhh
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQV-FSR 309 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~~q~~-~~~ 309 (409)
....|+||+..-. .+ ..|+|+|.|.-.||+--..... .+|++||.++.+....||. ..+
T Consensus 6 ~~~eC~IC~nt~n---------------~P--v~l~C~HkFCyiCiKGsy~ndk---~~CavCR~pids~i~~~psl~~~ 65 (324)
T KOG0824|consen 6 KKKECLICYNTGN---------------CP--VNLYCFHKFCYICIKGSYKNDK---KTCAVCRFPIDSTIDFEPSLKYR 65 (324)
T ss_pred cCCcceeeeccCC---------------cC--ccccccchhhhhhhcchhhcCC---CCCceecCCCCcchhcchhhhhh
Confidence 4567999987643 22 3789999999999998765543 4799999999988766665 456
Q ss_pred hhccCCccccccC--CCCCCCCCCC
Q 015321 310 LKNSFPRLRQSCD--NGQSRPWGCP 332 (409)
Q Consensus 310 lr~~~p~l~~~~~--~G~sr~wg~a 332 (409)
|+-..|.....+. .+.-..|++.
T Consensus 66 LK~n~p~~~~~t~~~~~rag~n~nq 90 (324)
T KOG0824|consen 66 LKPNTPEVKRITRSQAKRAGVNGNQ 90 (324)
T ss_pred hcCCCCCCCcccccHHhhhhhhccC
Confidence 6666666555444 3333335544
No 47
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.59 E-value=0.0013 Score=65.31 Aligned_cols=48 Identities=33% Similarity=0.863 Sum_probs=40.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 295 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 295 (409)
....|+||.+.+.. ..+.+.+|+|||..|..|+++...+. .+||+|.+
T Consensus 157 ~~~ncPic~e~l~~-------------s~~~~~~~~CgH~~h~~cf~e~~~~~----y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFL-------------SFEDAGVLKCGHYMHSRCFEEMICEG----YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhcc-------------ccccCCccCcccchHHHHHHHHhccC----CCCCcccc
Confidence 44559999998872 34567899999999999999998765 69999999
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0018 Score=66.02 Aligned_cols=49 Identities=31% Similarity=0.581 Sum_probs=38.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.....|.||+.+-. .+.+|||.|. ....|.+.---.. ..|||||..+.+
T Consensus 288 ~~gkeCVIClse~r-----------------dt~vLPCRHLCLCs~Ca~~Lr~q~----n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESR-----------------DTVVLPCRHLCLCSGCAKSLRYQT----NNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCc-----------------ceEEecchhhehhHhHHHHHHHhh----cCCCccccchHh
Confidence 34778999997754 3669999998 8899988775332 369999999976
No 49
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.50 E-value=0.0013 Score=51.03 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=28.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPI 292 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPL 292 (409)
....|+|.++.|. +.|....|||+|=.+.|.+++.++ ....||+
T Consensus 10 ~~~~CPiT~~~~~----------------~PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE----------------DPVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S----------------SEEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred eccCCCCcCChhh----------------CCcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 4568999999987 245567999999999999999433 2368998
No 50
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0006 Score=69.73 Aligned_cols=51 Identities=20% Similarity=0.496 Sum_probs=41.3
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
....|+|||..|.. ...+.-|+|-|..+||..-+...+ ..||.||+.++.+
T Consensus 42 ~~v~c~icl~llk~----------------tmttkeClhrfc~~ci~~a~r~gn---~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK----------------TMTTKECLHRFCFDCIWKALRSGN---NECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh----------------hcccHHHHHHHHHHHHHHHHHhcC---CCCchHHhhcccc
Confidence 45579999999971 233447999999999999998765 5999999998755
No 51
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.0022 Score=71.42 Aligned_cols=50 Identities=38% Similarity=0.743 Sum_probs=37.8
Q ss_pred CCCCCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 226 SYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 226 ~~s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+...+....|..|.-.|. .|.| -..|||.||.+|++ .+ ...||.|+.++.
T Consensus 834 sa~i~q~skCs~C~~~Ld---------------lP~V-hF~CgHsyHqhC~e---~~----~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 834 SAQIFQVSKCSACEGTLD---------------LPFV-HFLCGHSYHQHCLE---DK----EDKCPKCLPELR 883 (933)
T ss_pred ccceeeeeeecccCCccc---------------ccee-eeecccHHHHHhhc---cC----cccCCccchhhh
Confidence 334467789999988874 4555 67899999999999 22 247999999654
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.003 Score=65.35 Aligned_cols=52 Identities=35% Similarity=0.756 Sum_probs=41.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 302 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~ 302 (409)
.....|.||...|. +.| ++||||.|-..||++-+... ..||+||..+.+...
T Consensus 82 ~sef~c~vc~~~l~----------------~pv-~tpcghs~c~~Cl~r~ld~~----~~cp~Cr~~l~e~~~ 133 (398)
T KOG4159|consen 82 RSEFECCVCSRALY----------------PPV-VTPCGHSFCLECLDRSLDQE----TECPLCRDELVELPA 133 (398)
T ss_pred cchhhhhhhHhhcC----------------CCc-cccccccccHHHHHHHhccC----CCCcccccccccchH
Confidence 47788999988876 123 56999999999999977643 589999999986433
No 53
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0045 Score=63.04 Aligned_cols=59 Identities=31% Similarity=0.692 Sum_probs=41.4
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCC---CCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQ---KSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~---~~dptCPLCR~~~~ 298 (409)
..+..|+||++...++. .+ .-.-++|| |-|.|...||.+|-...+ +-...||+||....
T Consensus 159 s~~k~CGICme~i~ek~--~~--------~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA--AS--------ERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccc--hh--------hhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46789999999987422 11 12244555 999999999999974332 11258999998875
No 54
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.81 E-value=0.0031 Score=63.76 Aligned_cols=55 Identities=22% Similarity=0.545 Sum_probs=41.4
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC------------------C-CCCCCCC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK------------------T-QKSDPSC 290 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k------------------~-~~~dptC 290 (409)
.....|.|||--|. +.+...+.+|-|.||..||...|.. - ......|
T Consensus 113 ~p~gqCvICLygfa--------------~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavc 178 (368)
T KOG4445|consen 113 HPNGQCVICLYGFA--------------SSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVC 178 (368)
T ss_pred CCCCceEEEEEeec--------------CCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 46678999998887 5566778899999999999765542 1 1122569
Q ss_pred cccccCcc
Q 015321 291 PICLRLQE 298 (409)
Q Consensus 291 PLCR~~~~ 298 (409)
|+|+..++
T Consensus 179 pVcre~i~ 186 (368)
T KOG4445|consen 179 PVCRERIK 186 (368)
T ss_pred hHhhhhcc
Confidence 99999885
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.77 E-value=0.0046 Score=64.66 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=39.9
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+..+.|-||-+.=. .|.+=||||.....||..|-.... ..+||.||.++..
T Consensus 367 sTFeLCKICaendK-----------------dvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 367 STFELCKICAENDK-----------------DVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIKG 417 (563)
T ss_pred chHHHHHHhhccCC-----------------CcccccccchHHHHHHHhhcccCC--CCCCCceeeEecc
Confidence 46788999975522 466779999999999999975432 2489999999864
No 56
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.45 E-value=0.0091 Score=53.98 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=26.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCC------CHhhHHHHHhhc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR------HVFHAECLEQTT 280 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG------HVFHaeCLeqWL 280 (409)
....|+||++.+. +..-|-.++|| |+||++|+++|-
T Consensus 25 ~~~EC~IC~~~I~--------------~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRID--------------NNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhh--------------cCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 3568999999987 21223355776 899999999994
No 57
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.44 E-value=0.0087 Score=70.12 Aligned_cols=37 Identities=30% Similarity=0.573 Sum_probs=27.7
Q ss_pred ceeecCCCHhhHHHHHhhccCCCC------CCCCCcccccCcc
Q 015321 262 VGVLSCRHVFHAECLEQTTPKTQK------SDPSCPICLRLQE 298 (409)
Q Consensus 262 VaVLPCGHVFHaeCLeqWL~k~~~------~dptCPLCR~~~~ 298 (409)
.-.|.|+|+||.+|...-|..+-. .-..||||+..+.
T Consensus 3502 ~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3502 AIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 447899999999999876654321 1147999999885
No 58
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.011 Score=58.65 Aligned_cols=53 Identities=21% Similarity=0.361 Sum_probs=42.9
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.....|+||...|+. -++.+.+-||||||-.+|.++.+.+. -.||+|-+.+.+
T Consensus 219 s~ryiCpvtrd~LtN-------------t~~ca~Lr~sg~Vv~~ecvEklir~D----~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTN-------------TTPCAVLRPSGHVVTKECVEKLIRKD----MVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcC-------------ccceEEeccCCcEeeHHHHHHhcccc----ccccCCCCcCcc
Confidence 467789999999982 33444444899999999999999775 589999998875
No 59
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.0014 Score=67.98 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=41.5
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
...|+||.+.|.+. .+.+..+.|||++|.+||++||.+.. .||.|++.+..
T Consensus 196 v~sl~I~~~slK~~-------------y~k~~~~~~g~~~~~~kL~k~L~~~~----kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQN-------------YDKISAIVCGHIYHHGKLSKWLATKR----KLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHH-------------HHHHHHHhhcccchhhHHHHHHHHHH----HhHHHHhhhhh
Confidence 45699999999852 23456778999999999999998854 79999999863
No 60
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.014 Score=56.22 Aligned_cols=53 Identities=21% Similarity=0.482 Sum_probs=42.4
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
....|-||.++|... ......++|.|||.|-..|+..-+.... ..||.||...
T Consensus 2 ~~~~c~~c~~~~s~~-----------~~~~~p~~l~c~h~~c~~c~~~l~~~~~---i~cpfcR~~~ 54 (296)
T KOG4185|consen 2 SFPECEICNEDYSSE-----------DGDHIPRVLKCGHTICQNCASKLLGNSR---ILCPFCRETT 54 (296)
T ss_pred CCCceeecCcccccc-----------CcccCCcccccCceehHhHHHHHhcCce---eeccCCCCcc
Confidence 456899999999821 1334678999999999999998876554 5799999997
No 61
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.01 Score=66.42 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=29.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTP 281 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~ 281 (409)
.....|.+|...|-- . .--+.||||.||.+||.+-..
T Consensus 815 ep~d~C~~C~~~ll~--------------~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI--------------K-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhc--------------C-cceeeeccchHHHHHHHHHHH
Confidence 467789999999872 1 234889999999999987754
No 62
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.018 Score=56.73 Aligned_cols=52 Identities=27% Similarity=0.569 Sum_probs=39.1
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC---CC-CCCCCCcccccCcc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK---TQ-KSDPSCPICLRLQE 298 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k---~~-~~dptCPLCR~~~~ 298 (409)
...|.+|.-.|.+ .+.+ .|.|=|+||-+||++|-.. +. .....||-|..++-
T Consensus 50 ~pNC~LC~t~La~--------------gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLAS--------------GDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCcccc--------------Ccce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4579999999983 2233 6899999999999999532 21 12358999999885
No 63
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.94 E-value=0.017 Score=55.92 Aligned_cols=70 Identities=20% Similarity=0.485 Sum_probs=49.9
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCC------CC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS------PD 303 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~------~~ 303 (409)
.....|+|+...|.. -..-|.+.+|||||=..||++.- +. ..||+|-..+...+ +.
T Consensus 111 ~~~~~CPvt~~~~~~-------------~~~fv~l~~cG~V~s~~alke~k-~~----~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 111 EGRFICPVTGKEFNG-------------KHKFVYLRPCGCVFSEKALKELK-KS----KKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CceeECCCCCcccCC-------------ceeEEEEcCCCCEeeHHHHHhhc-cc----ccccccCCccccCCEEEecCCc
Confidence 456789999999862 23456677999999999999993 22 47999999997542 23
Q ss_pred chhhhhhhccCCccc
Q 015321 304 QQVFSRLKNSFPRLR 318 (409)
Q Consensus 304 q~~~~~lr~~~p~l~ 318 (409)
+ -+..++..|-.++
T Consensus 173 e-e~~~l~~~~~~~~ 186 (260)
T PF04641_consen 173 E-ELEKLRERMEERK 186 (260)
T ss_pred c-HHHHHHHHHHHHH
Confidence 3 5566665554444
No 64
>PHA02862 5L protein; Provisional
Probab=94.78 E-value=0.022 Score=52.60 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=34.6
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
..|-||.+.-. + . +-||. -.-|.+||++|+...+ ...|++|+.++.
T Consensus 3 diCWIC~~~~~--------------e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~--k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCD--------------E--R--NNFCGCNEEYKVVHIKCMQLWINYSK--KKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCC--------------C--C--cccccccCcchhHHHHHHHHHHhcCC--CcCccCCCCeEE
Confidence 57999987632 1 1 24664 5789999999997654 468999999995
No 65
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.70 E-value=0.014 Score=56.60 Aligned_cols=45 Identities=31% Similarity=0.722 Sum_probs=37.1
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+.|.||.++|.. ++ |..|||.|...|.-.-+.+. +.|-+|-+..-
T Consensus 197 F~C~iCKkdy~s---------------pv--vt~CGH~FC~~Cai~~y~kg----~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYES---------------PV--VTECGHSFCSLCAIRKYQKG----DECGVCGKATY 241 (259)
T ss_pred eeehhchhhccc---------------hh--hhhcchhHHHHHHHHHhccC----Ccceecchhhc
Confidence 479999999971 23 44899999999999888776 58999998874
No 66
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.62 E-value=0.012 Score=47.46 Aligned_cols=46 Identities=24% Similarity=0.658 Sum_probs=23.7
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
...|.+|.+.|. ..|-...|.|+|-..||..-+.. .||+|..+.-+
T Consensus 7 lLrCs~C~~~l~----------------~pv~l~~CeH~fCs~Ci~~~~~~------~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILK----------------EPVCLGGCEHIFCSSCIRDCIGS------ECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--S----------------S-B---SSS--B-TTTGGGGTTT------B-SSS--B-S-
T ss_pred hcCCcHHHHHhc----------------CCceeccCccHHHHHHhHHhcCC------CCCCcCChHHH
Confidence 457999998887 23446689999999999887653 49999998754
No 67
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.013 Score=46.45 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=30.8
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceee-cCCCH-hhHHHH-HhhccCCCCCCCCCcccccCccc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHV-FHAECL-EQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHV-FHaeCL-eqWL~k~~~~dptCPLCR~~~~~ 299 (409)
..|.||.+. ++..|| .|||. +.-+|- ++|.... ..|||||.++..
T Consensus 8 dECTICye~------------------pvdsVlYtCGHMCmCy~Cg~rl~~~~~----g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEH------------------PVDSVLYTCGHMCMCYACGLRLKKALH----GCCPICRAPIKD 55 (62)
T ss_pred cceeeeccC------------------cchHHHHHcchHHhHHHHHHHHHHccC----CcCcchhhHHHH
Confidence 679999754 233344 79997 566774 5554322 589999998764
No 68
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.07 E-value=0.043 Score=51.10 Aligned_cols=50 Identities=26% Similarity=0.536 Sum_probs=35.4
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCC---HhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRH---VFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGH---VFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
....|-||.+.-. +...-=.|.. .-|.+||++|+.+.+ ...|++|...+.
T Consensus 7 ~~~~CRIC~~~~~----------------~~~~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD----------------VVTNYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC----------------CccCCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCeEE
Confidence 5667999976632 1111113555 669999999998764 468999999996
No 69
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.91 E-value=0.013 Score=43.71 Aligned_cols=42 Identities=29% Similarity=0.654 Sum_probs=26.5
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCccc
Q 015321 235 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 235 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
|-||++.-.+ + + .-+.||. -..|.+||++|+.... ..+|++|
T Consensus 1 CrIC~~~~~~-------------~-~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEE-------------D-E-PLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SS-------------S-S--EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCC-------------C-C-ceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 7799887552 1 1 2245765 3689999999998643 3579998
No 70
>PHA03096 p28-like protein; Provisional
Probab=93.26 E-value=0.04 Score=54.86 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=35.9
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
-.|+||++....+.+ ....-+.|+ |-|+|-..|+..|-.... ...+||.|+.--
T Consensus 179 k~c~ic~e~~~~k~~----------~~~~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~~~ 233 (284)
T PHA03096 179 KICGICLENIKAKYI----------IKKYYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRRLN 233 (284)
T ss_pred hhcccchhhhhhhcc----------ccccccccccCCcHHHHHHHHHHHHhhh-hcccCccccchh
Confidence 679999988774431 112344664 999999999999976543 223555555444
No 71
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=93.18 E-value=0.055 Score=55.56 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=38.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.....|+||...+. + .+....|||.|-+.|+..|+... ..||.|+...-
T Consensus 19 ~~~l~C~~C~~vl~--------------~--p~~~~~cgh~fC~~C~~~~~~~~----~~cp~~~~~~~ 67 (391)
T KOG0297|consen 19 DENLLCPICMSVLR--------------D--PVQTTTCGHRFCAGCLLESLSNH----QKCPVCRQELT 67 (391)
T ss_pred cccccCcccccccc--------------C--CCCCCCCCCcccccccchhhccC----cCCcccccccc
Confidence 35578999998887 2 12225899999999999999763 58999987774
No 72
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.05 E-value=0.052 Score=53.01 Aligned_cols=33 Identities=33% Similarity=0.826 Sum_probs=27.5
Q ss_pred CCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 260 PVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 260 ~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+.--++.|+|||...|...-... .||+|++.+.
T Consensus 16 ~~f~LTaC~HvfC~~C~k~~~~~------~C~lCkk~ir 48 (233)
T KOG4739|consen 16 DPFFLTACRHVFCEPCLKASSPD------VCPLCKKSIR 48 (233)
T ss_pred CceeeeechhhhhhhhcccCCcc------ccccccceee
Confidence 34567799999999999887753 6999999975
No 73
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=92.57 E-value=0.037 Score=56.35 Aligned_cols=53 Identities=25% Similarity=0.652 Sum_probs=42.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 302 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~ 302 (409)
.....|.+|...|- |. ..+.-|=|.|...||-+.|.+.+ .||.|...+....+
T Consensus 13 n~~itC~LC~GYli--------------DA--TTI~eCLHTFCkSCivk~l~~~~----~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 13 NPHITCRLCGGYLI--------------DA--TTITECLHTFCKSCIVKYLEESK----YCPTCDIVIHKTHP 65 (331)
T ss_pred ccceehhhccceee--------------cc--hhHHHHHHHHHHHHHHHHHHHhc----cCCccceeccCccc
Confidence 35678999999886 33 33447999999999999998854 89999999975543
No 74
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.045 Score=55.24 Aligned_cols=46 Identities=30% Similarity=0.746 Sum_probs=37.6
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+.|.||.++|.. ++ |..|||.|...|.-+=+.+. ..|++|-+..-
T Consensus 241 Pf~c~icr~~f~~---------------pV--vt~c~h~fc~~ca~~~~qk~----~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---------------PV--VTKCGHYFCEVCALKPYQKG----EKCYVCSQQTH 286 (313)
T ss_pred Ccccccccccccc---------------ch--hhcCCceeehhhhccccccC----Ccceecccccc
Confidence 3569999999871 23 45899999999999988876 48999999885
No 75
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.14 Score=51.67 Aligned_cols=34 Identities=21% Similarity=0.620 Sum_probs=29.2
Q ss_pred eecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 264 VLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 264 VLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
+-+|||-....|.+..+..+. ..||-|+..+.-+
T Consensus 20 in~C~H~lCEsCvd~iF~~g~---~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 20 INECGHRLCESCVDRIFSLGP---AQCPECMVILRKN 53 (300)
T ss_pred eccccchHHHHHHHHHHhcCC---CCCCcccchhhhc
Confidence 449999999999999998875 7899999988643
No 76
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.74 E-value=0.11 Score=53.21 Aligned_cols=45 Identities=33% Similarity=0.734 Sum_probs=36.1
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 296 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 296 (409)
..|++|...|.+ .+..--|+|.|..+||+.-|... |..||.|-..
T Consensus 275 LkCplc~~Llrn----------------p~kT~cC~~~fc~eci~~al~ds---Df~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRN----------------PMKTPCCGHTFCDECIGTALLDS---DFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhC----------------cccCccccchHHHHHHhhhhhhc---cccCCCcccc
Confidence 689999998872 23333599999999999998765 4789999874
No 77
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.42 E-value=0.16 Score=38.79 Aligned_cols=45 Identities=22% Similarity=0.495 Sum_probs=21.8
Q ss_pred ccccccchhccCCCcccccccCCCCCCceee--cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 235 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 235 CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
|++|.+++..+ + ...+ +||+-+-..|....+...+ ..||-||+.|
T Consensus 1 cp~C~e~~d~~------------d---~~~~PC~Cgf~IC~~C~~~i~~~~~---g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET------------D---KDFYPCECGFQICRFCYHDILENEG---GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC------------C---TT--SSTTS----HHHHHHHTTSS----SB-TTT--B-
T ss_pred CCCcccccccC------------C---CccccCcCCCcHHHHHHHHHHhccC---CCCCCCCCCC
Confidence 78998888521 1 2234 5999999999998886432 5899999986
No 78
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.13 Score=51.60 Aligned_cols=51 Identities=20% Similarity=0.508 Sum_probs=38.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
....+|++|.++=+ .|- ...+|||+|.--||..-+.-.- -.+||.|.....
T Consensus 237 t~~~~C~~Cg~~Pt---------------iP~-~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---------------IPH-VIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCC---------------CCe-eeccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 57789999987733 222 2558999999999998876432 158999998876
No 79
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.44 E-value=0.11 Score=58.08 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=35.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCP 291 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCP 291 (409)
.....|+||+..+.+ |-+|--+|-+.. .--+.||||.|..|..+|+..+. .||
T Consensus 1016 ~ri~~~~~~~~~~~~-C~~C~l~V~gss----~~Cg~C~Hv~H~sc~~eWf~~gd----~Cp 1068 (1081)
T KOG0309|consen 1016 VRITQCAICKGFTFQ-CAICHLAVRGSS----NFCGTCGHVGHTSCMMEWFRTGD----VCP 1068 (1081)
T ss_pred eeeeeccccccceee-eeeEeeEeeccc----hhhccccccccHHHHHHHHhcCC----cCC
Confidence 456778888887765 434422222211 12358999999999999998765 677
No 80
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.71 E-value=0.23 Score=51.74 Aligned_cols=49 Identities=18% Similarity=0.491 Sum_probs=37.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhh--ccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT--TPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqW--L~k~~~~dptCPLCR~~~~~ 299 (409)
.+.+.|-||-+.++ -+.++||+|-....|.-.- |-+. ..||+||..+.+
T Consensus 59 Een~~C~ICA~~~T-----------------Ys~~~PC~H~~CH~Ca~RlRALY~~----K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTT-----------------YSARYPCGHQICHACAVRLRALYMQ----KGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCce-----------------EEEeccCCchHHHHHHHHHHHHHhc----cCCCccccccce
Confidence 46678999988876 4679999999988886433 2222 379999999875
No 81
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=0.13 Score=52.96 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCccccCCCCCCCCC---CceeeecCCC
Q 015321 5 EPYWQTNTSFSPPPS---RWDFRFQSEG 29 (409)
Q Consensus 5 ep~wr~n~~~spp~s---~wd~r~~s~g 29 (409)
+=+|.-|.-+.++.+ .|+-|.|..|
T Consensus 100 ~~~~~~~~k~~~~~~~~~~~~l~~q~~~ 127 (355)
T KOG1571|consen 100 GGHWNANSKIFHEGGNEVPFFLRSQTTG 127 (355)
T ss_pred ceeeccceeeccCCCcccceeeccCCcc
Confidence 568888899999887 7888877766
No 82
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=88.59 E-value=0.18 Score=39.63 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=25.7
Q ss_pred CceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 261 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 261 vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
+-.+|||||+.-..|.+.+-- .-||+|-+.+.-.
T Consensus 19 ~~~~~pCgH~I~~~~f~~~rY------ngCPfC~~~~~~~ 52 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPGERY------NGCPFCGTPFEFD 52 (55)
T ss_pred ccccccccceeeccccChhhc------cCCCCCCCcccCC
Confidence 345889999998888776621 3799999988643
No 83
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=88.15 E-value=0.31 Score=53.04 Aligned_cols=69 Identities=19% Similarity=0.413 Sum_probs=43.9
Q ss_pred ccCCCCCcccccCCCC----CCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-CCCC
Q 015321 213 DVSEPFESESFGQSYV----PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSD 287 (409)
Q Consensus 213 di~e~~~~es~~~~~s----~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-~~~d 287 (409)
.+.+|.+.+......+ -.....|.+|.++-. | .-+-.|.|+|..-||.+.+..- ...+
T Consensus 513 Q~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ae--------------d---~i~s~ChH~FCrlCi~eyv~~f~~~~n 575 (791)
T KOG1002|consen 513 QAADHPDLVLYSANANLPDENKGEVECGLCHDPAE--------------D---YIESSCHHKFCRLCIKEYVESFMENNN 575 (791)
T ss_pred HhccCcceeeehhhcCCCccccCceeecccCChhh--------------h---hHhhhhhHHHHHHHHHHHHHhhhcccC
Confidence 4446665544321111 145678999987744 1 2245899999999997775431 1123
Q ss_pred CCCcccccCcc
Q 015321 288 PSCPICLRLQE 298 (409)
Q Consensus 288 ptCPLCR~~~~ 298 (409)
-+||.|-..+.
T Consensus 576 vtCP~C~i~Ls 586 (791)
T KOG1002|consen 576 VTCPVCHIGLS 586 (791)
T ss_pred CCCcccccccc
Confidence 79999998875
No 84
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.18 E-value=0.23 Score=55.69 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=35.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 295 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 295 (409)
-...|..|.+..- ++......+.|+-|||+||.+|+..-..+++ |-+|..
T Consensus 783 ~e~rc~~c~~~~l----------~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-----~~~~~~ 832 (846)
T KOG2066|consen 783 VEERCSSCFEPNL----------PSGAAFDSVVVFHCGHMYHKECLMMESLRNA-----CNIESG 832 (846)
T ss_pred ehhhhhhhccccc----------ccCcccceeeEEEccchhhhcccccHHHhcc-----cChhhc
Confidence 3457999987754 2222345688999999999999988766542 555543
No 85
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.98 E-value=0.42 Score=46.00 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=28.0
Q ss_pred eecCCCHhhHHHHHhhccC----CCCCC---CCCcccccCcccC
Q 015321 264 VLSCRHVFHAECLEQTTPK----TQKSD---PSCPICLRLQEEN 300 (409)
Q Consensus 264 VLPCGHVFHaeCLeqWL~k----~~~~d---ptCPLCR~~~~~~ 300 (409)
-..||.-||.-||..||.. ++..| ..||.|..++..|
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 3479999999999999864 22222 5799999988643
No 86
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.24 E-value=0.38 Score=48.17 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=41.2
Q ss_pred CCCcccccccccchhccCCCcccccccCCCCCCc-eeecCC-----CHhhHHHHHhhccCCCCC----CCCCcccccCcc
Q 015321 229 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVV-GVLSCR-----HVFHAECLEQTTPKTQKS----DPSCPICLRLQE 298 (409)
Q Consensus 229 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vV-aVLPCG-----HVFHaeCLeqWL~k~~~~----dptCPLCR~~~~ 298 (409)
.+.+..|=||...=+ |.... =|-||. |--|..||..|+.+++.. .-.||-|..+|.
T Consensus 17 ~e~eR~CWiCF~Tde--------------Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDE--------------DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCc--------------ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 356778999986633 33222 234775 789999999999886642 247999999996
Q ss_pred cC
Q 015321 299 EN 300 (409)
Q Consensus 299 ~~ 300 (409)
-.
T Consensus 83 iv 84 (293)
T KOG3053|consen 83 IV 84 (293)
T ss_pred ee
Confidence 43
No 87
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=86.23 E-value=0.38 Score=54.41 Aligned_cols=56 Identities=27% Similarity=0.707 Sum_probs=39.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCC---CCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK---SDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~---~dptCPLCR~~~~ 298 (409)
.+...|.||.+.+.... ++-.=-.|=||||..||.+|-....+ ....||-|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~-------------~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTA-------------PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccC-------------CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 46778999999887221 12112247799999999999765332 3378999996554
No 88
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.05 E-value=0.25 Score=46.83 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=24.6
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhH
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHA 273 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHa 273 (409)
+.-.|.||+|+|. -.+.++.|||-=+||.
T Consensus 176 dkGECvICLEdL~--------------~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLE--------------AGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhcc--------------CCCceeccceEEEeec
Confidence 5678999999998 3457999999999985
No 90
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=83.50 E-value=0.97 Score=42.35 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=13.3
Q ss_pred CCCCcccccCcccCCCCch
Q 015321 287 DPSCPICLRLQEENSPDQQ 305 (409)
Q Consensus 287 dptCPLCR~~~~~~~~~q~ 305 (409)
...||+||..+.+-...++
T Consensus 80 ~L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTVVEP 98 (162)
T ss_pred cccCccccCceeceEEchH
Confidence 4689999999976333333
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=83.33 E-value=0.59 Score=51.67 Aligned_cols=48 Identities=27% Similarity=0.712 Sum_probs=37.5
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
..|.||.+ ++ . .-+.+|||.|-.+|+.+-+...+. ..||+|+..+.++
T Consensus 455 ~~c~ic~~-~~---------------~--~~it~c~h~~c~~c~~~~i~~~~~--~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LD---------------S--FFITRCGHDFCVECLKKSIQQSEN--APCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cc---------------c--ceeecccchHHHHHHHhccccccC--CCCcHHHHHHHHH
Confidence 78999998 33 1 224599999999999999876552 3799999998643
No 92
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=83.01 E-value=0.53 Score=34.62 Aligned_cols=26 Identities=27% Similarity=0.874 Sum_probs=16.0
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
.|+=-+|..|++.++.... ++.||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 3666799999999997754 3479988
No 93
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.73 E-value=0.49 Score=52.46 Aligned_cols=87 Identities=18% Similarity=0.424 Sum_probs=54.4
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC---CC-Cch
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN---SP-DQQ 305 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~---~~-~q~ 305 (409)
.+...|.||+..|.- .-. ....|-|||+...+|++.-... +|| |+.+.... .- +-.
T Consensus 9 ~~~l~c~ic~n~f~~------------~~~-~Pvsl~cghtic~~c~~~lyn~------scp-~~~De~~~~~~~~e~p~ 68 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVV------------QRL-EPVSLQCGHTICGHCVQLLYNA------SCP-TKRDEDSSLMQLKEEPR 68 (861)
T ss_pred HHHhhchHHHHHHHH------------Hhc-CcccccccchHHHHHHHhHhhc------cCC-CCccccchhcChhhcch
Confidence 456789999777651 011 1226789999999999988753 799 77765411 11 222
Q ss_pred hhhhhhccCCc--cccccCCCC-CCC--CCCCCCCc
Q 015321 306 VFSRLKNSFPR--LRQSCDNGQ-SRP--WGCPQAGG 336 (409)
Q Consensus 306 ~~~~lr~~~p~--l~~~~~~G~-sr~--wg~a~ag~ 336 (409)
-+.-||..+++ +.=+.+-|. .-+ |.|-+-||
T Consensus 69 n~alL~~~~d~~~~~~a~~~g~~ispe~~~~~qlg~ 104 (861)
T KOG3161|consen 69 NYALLRREHDAQIVHIAMEAGLRISPEQWSSLQLGD 104 (861)
T ss_pred hHHHHHhhcchhhhhcccCCcccCCHHHHHHHHHHH
Confidence 35556666777 444445563 222 88887774
No 94
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=82.33 E-value=0.57 Score=46.82 Aligned_cols=52 Identities=19% Similarity=0.524 Sum_probs=39.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceee--c-CCCHhhHHHHHhhccCCCCCCCCCc--ccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--S-CRHVFHAECLEQTTPKTQKSDPSCP--ICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--P-CGHVFHaeCLeqWL~k~~~~dptCP--LCR~~~~ 298 (409)
+.+..|+||..+-- -.|.+..| | |=|-+.+.|.+..|..+. ..|| -|.+.+.
T Consensus 8 ~~d~~CPvCksDrY--------------LnPdik~linPECyHrmCESCvdRIFs~Gp---AqCP~~gC~kILR 64 (314)
T COG5220 8 MEDRRCPVCKSDRY--------------LNPDIKILINPECYHRMCESCVDRIFSRGP---AQCPYKGCGKILR 64 (314)
T ss_pred hhcccCCccccccc--------------cCCCeEEEECHHHHHHHHHHHHHHHhcCCC---CCCCCccHHHHHH
Confidence 35568999986643 22444455 5 999999999999999876 5799 8877664
No 95
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.25 E-value=0.9 Score=48.03 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=38.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC----CCCCCCCCcccccCc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK----TQKSDPSCPICLRLQ 297 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k----~~~~dptCPLCR~~~ 297 (409)
.....|.||.+... .......|||+|||...|+...+.- ...+...||-|.-.-
T Consensus 182 ~slf~C~ICf~e~~--------------G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 182 NSLFDCCICFEEQM--------------GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred hhcccceeeehhhc--------------CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 36678999998865 2234668899999999999888653 233335788766544
No 96
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=80.99 E-value=0.75 Score=50.23 Aligned_cols=53 Identities=32% Similarity=0.653 Sum_probs=32.4
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
..+..|-||... ..|.+.....+.+=..||++||..|+..-- +.||.|-+.-.
T Consensus 509 ~~gfiCe~Cq~~---------~iiyPF~~~~~~rC~~C~avfH~~C~~r~s-------~~CPrC~R~q~ 561 (580)
T KOG1829|consen 509 GKGFICELCQHN---------DIIYPFETRNTRRCSTCLAVFHKKCLRRKS-------PCCPRCERRQK 561 (580)
T ss_pred cCeeeeeeccCC---------CcccccccccceeHHHHHHHHHHHHHhccC-------CCCCchHHHHH
Confidence 356677777322 122222233345566899999999986532 35999976553
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.51 E-value=0.83 Score=51.31 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=23.5
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcc--cccCcc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPI--CLRLQE 298 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPL--CR~~~~ 298 (409)
.|||.-|.+||.+|+.+.. .||. |-....
T Consensus 798 ~C~H~gH~sh~~sw~~~~s----~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 798 VCGHGGHDSHLKSWFFKAS----PCAKSICPHLCH 828 (839)
T ss_pred cccccccHHHHHHHHhcCC----CCccccCCcccc
Confidence 5999999999999998864 6776 665554
No 98
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.39 E-value=1.4 Score=41.98 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=36.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+...|-||....... ..+ .-+.||. +..|..|++.|+.... +..|.+|...+.
T Consensus 76 ~~~~~cRIc~~~~~~~----------~~~---~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 76 SSGPICRICHEEDEES----------NGL---LLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFFI 134 (323)
T ss_pred CCCCcEEEEecccccc----------ccc---ccccCccccCcHHHHHHHHHHhhhcccc--Ceeeecccccce
Confidence 3467899998765411 000 1133553 6679999999998543 468999999774
No 99
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=78.98 E-value=1.5 Score=45.30 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=25.2
Q ss_pred cCCCHhhHHHHHhhccCCCC---------CCCCCcccccCcc
Q 015321 266 SCRHVFHAECLEQTTPKTQK---------SDPSCPICLRLQE 298 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~---------~dptCPLCR~~~~ 298 (409)
-|......+|+-+||..++. ..-+||+||+..-
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 46677799999999976552 2258999999864
No 100
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=78.18 E-value=1.8 Score=34.06 Aligned_cols=36 Identities=22% Similarity=0.592 Sum_probs=24.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhh
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT 279 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqW 279 (409)
....|.+|.+.|.. ..+.|.=-.||=.||.+|-+.-
T Consensus 4 ~~~~C~~Cg~~~~~-------------~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD-------------GDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccC-------------CCCEEECCCCCCcccHHHHhhC
Confidence 34679999999971 1223322359999999997654
No 101
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=77.45 E-value=1.4 Score=41.61 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=32.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 296 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 296 (409)
..+..|.||..+ + .|.+.....++.=..|+-+||.+|..+ . .||-|.+.
T Consensus 150 ~kGfiCe~C~~~-~--------~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R~ 198 (202)
T PF13901_consen 150 QKGFICEICNSD-D--------IIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCARR 198 (202)
T ss_pred hCCCCCccCCCC-C--------CCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHhH
Confidence 467888888643 2 122222324454557999999999883 1 59999764
No 102
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=76.09 E-value=1.4 Score=45.56 Aligned_cols=45 Identities=27% Similarity=0.648 Sum_probs=31.4
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
...|.-|...+. ---+..||-|||..+|...=- |..||+|-..+.
T Consensus 90 VHfCd~Cd~PI~----------------IYGRmIPCkHvFCl~CAr~~~------dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIA----------------IYGRMIPCKHVFCLECARSDS------DKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcce----------------eeecccccchhhhhhhhhcCc------cccCcCcccHHH
Confidence 456888876665 012456999999999986432 237999987763
No 103
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.11 E-value=0.75 Score=46.97 Aligned_cols=42 Identities=26% Similarity=0.609 Sum_probs=27.6
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHh-hHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVF-HAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVF-HaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
...|+||.+.-. | --.|+|||.- ..+|-... ..|||||+-+.
T Consensus 300 ~~LC~ICmDaP~--------------D---CvfLeCGHmVtCt~CGkrm--------~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR--------------D---CVFLECGHMVTCTKCGKRM--------NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc--------------c---eEEeecCcEEeehhhcccc--------ccCchHHHHHH
Confidence 678999985532 1 2367999963 44444333 26999998765
No 104
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.74 E-value=1.5 Score=41.99 Aligned_cols=30 Identities=37% Similarity=0.737 Sum_probs=22.0
Q ss_pred CceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 261 VVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 261 vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.|.+|||.|. +...|-+. + ..||+|+....
T Consensus 170 ~VlllPCrHl~lC~~C~~~-~-------~~CPiC~~~~~ 200 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES-L-------RICPICRSPKT 200 (207)
T ss_pred eEEeecccceEeccccccc-C-------ccCCCCcChhh
Confidence 3668899986 55677665 3 36999998764
No 105
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=69.24 E-value=7.6 Score=43.27 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=55.5
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCcccccccc-----CCCCcccccccccCCCccccCCCCCChhhhhhhhhhccccc--
Q 015321 118 IEGTSANPYSRGSTSSRSDSSESEPKVKSCIS-----SHCNFSSRLSFMSKPIYPLSFPTQTSNREAIDSASTVLSED-- 190 (409)
Q Consensus 118 ~e~~~~~~~s~~s~ss~s~ss~~~~~~k~~~s-----~~rN~~~rrsfmskpi~pL~f~~~~~~~~A~~~~~s~lse~-- 190 (409)
.|..+....|+.+.+|+++++|-.-+.+-..+ .+.-|.--.-.|.++...++|++.+.-+-|+..+ +|+-+
T Consensus 63 ~~a~s~sSeS~s~s~S~~~g~E~~a~~Rdag~~~~ep~aA~~~~~~~~L~~~~r~~~f~~~~~hRKAi~ks--glqhlAp 140 (1004)
T KOG0782|consen 63 HEAVSVSSESSSSSASDSEGDEDSATGRDAGNNHLEPSAARFSISNPDLTNCQRKQMFPEMADHRKAIAKS--GLQHLAP 140 (1004)
T ss_pred cccccccccccccccccccccccCCCccccccCCCCccccccccCChhHHHHHHhcccHHhhhHHHHHHHH--HHhhcCC
Confidence 45666667777777788887773322222211 1111111122366677788999999988888775 66654
Q ss_pred --CCCCc---c----ccccccCCCCChhhhcccC
Q 015321 191 --DTSTP---Q----WEAHRWSSASSSVDFADVS 215 (409)
Q Consensus 191 --~as~s---~----r~~~~ws~asS~~d~~di~ 215 (409)
+++.+ + |...+|+.+-.+++-++++
T Consensus 141 ~~pts~Pv~~~~ke~Rst~dWsE~a~~gEHvWle 174 (1004)
T KOG0782|consen 141 DQPTSNPVNKHAKEPRSTRDWSEDAGDGEHVWLE 174 (1004)
T ss_pred CCCCCcchhhcccCccchhhhhhccCCceeEEEe
Confidence 23311 1 4467887776665555554
No 106
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=68.03 E-value=3.7 Score=46.97 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=36.4
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+...|-||..+=.+ |.|.-. ||. -..|.+||-+|+.... +..|-+|..++.
T Consensus 10 ~d~~~CRICr~e~~~-------------d~pLfh--PCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIR-------------DDPLFH--PCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCC-------------CCcCcc--cccccchhHHHHHHHHHHHHhcCC--Ccceeeecceee
Confidence 366889999755442 333222 543 3589999999997543 457999999885
No 107
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.87 E-value=3.1 Score=43.76 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=36.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCce-eecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG-VLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVa-VLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+++..|+||-.. +..+ .-||+|-=...||.+-+...+ .|-.|+..+.
T Consensus 420 sEd~lCpICyA~------------------pi~Avf~PC~H~SC~~CI~qHlmN~k----~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG------------------PINAVFAPCSHRSCYGCITQHLMNCK----RCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc------------------cchhhccCCCCchHHHHHHHHHhcCC----eeeEecceee
Confidence 577889999632 1122 349999999999999998765 7999999875
No 108
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.02 E-value=3.8 Score=43.12 Aligned_cols=52 Identities=25% Similarity=0.508 Sum_probs=37.5
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
..+.|+|=.+.=+ .++|+. .|.||||.-.+-|++...... +...||-|=...
T Consensus 333 SvF~CPVlKeqts-------------deNPPm-~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTS-------------DENPPM-MLICGHVISKDALNRLSKNGS-QSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhcc-------------CCCCCe-eeeccceecHHHHHHHhhCCC-eeeeCCCCCccc
Confidence 5578998765433 355554 789999999999999876543 246799996554
No 109
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.80 E-value=3.9 Score=41.22 Aligned_cols=53 Identities=17% Similarity=0.407 Sum_probs=38.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 301 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~ 301 (409)
.....|+|=.-++..+ -.-++...|||||-+.-|.+.-. ..|++|...|.+.+
T Consensus 109 ~a~fiCPvtgleMng~-------------~~F~~l~~CGcV~SerAlKeika------s~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGK-------------YRFCALRCCGCVFSERALKEIKA------SVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecce-------------EEEEEEeccceeccHHHHHHhhh------ccccccCCcccccC
Confidence 3556798887666521 11244568999999999999853 37999999997653
No 110
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=65.74 E-value=2.4 Score=50.22 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=38.8
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
....|.||++.+.. .-++..|||.|-..|+..|+... ..||+|+...+
T Consensus 1152 ~~~~c~ic~dil~~----------------~~~I~~cgh~~c~~c~~~~l~~~----s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRN----------------QGGIAGCGHEPCCRCDELWLYAS----SRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHh----------------cCCeeeechhHhhhHHHHHHHHh----ccCcchhhhhh
Confidence 55689999998871 23466899999999999999765 48999997665
No 111
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=65.01 E-value=0.62 Score=33.84 Aligned_cols=30 Identities=30% Similarity=0.672 Sum_probs=21.4
Q ss_pred cCCCHhhHHHHHhhccCC--CCCCCCCccccc
Q 015321 266 SCRHVFHAECLEQTTPKT--QKSDPSCPICLR 295 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~--~~~dptCPLCR~ 295 (409)
.|+-.||..|+..-.... ...+..||.|+.
T Consensus 19 ~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 19 SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 699999999997765421 112478999864
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=58.57 E-value=7.1 Score=41.01 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=32.6
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+++-|++|.+++.- .|. .----+||--...-|..-.-..- +..||-||+.+.
T Consensus 13 eed~cplcie~mdi------------tdk-nf~pc~cgy~ic~fc~~~irq~l---ngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDI------------TDK-NFFPCPCGYQICQFCYNNIRQNL---NGRCPACRRKYD 64 (480)
T ss_pred ccccCccccccccc------------ccC-CcccCCcccHHHHHHHHHHHhhc---cCCChHhhhhcc
Confidence 44559999998861 111 12223688777777755443322 268999999985
No 113
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=56.09 E-value=3.7 Score=43.34 Aligned_cols=61 Identities=23% Similarity=0.392 Sum_probs=0.0
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCC--CCCCCcccccCcc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK--SDPSCPICLRLQE 298 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~--~dptCPLCR~~~~ 298 (409)
...|+|=+..|.= |--..+.+.....+ -.-|.||||+-.+ .|-.+.+. ...+||+|+..-.
T Consensus 277 rpQCPVglnTL~f--p~~~~~~~~~~~qP-~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVF--PSKSRKDVPDERQP-WVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCCCcCCCcccc--ccccccccccccCc-eeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 4558877776641 11111111211222 2257899997543 67543321 2468999997643
No 114
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.49 E-value=8.6 Score=39.67 Aligned_cols=32 Identities=28% Similarity=0.592 Sum_probs=24.9
Q ss_pred CCCHhhHHHHHhhccCCCC---------CCCCCcccccCcc
Q 015321 267 CRHVFHAECLEQTTPKTQK---------SDPSCPICLRLQE 298 (409)
Q Consensus 267 CGHVFHaeCLeqWL~k~~~---------~dptCPLCR~~~~ 298 (409)
|......+||-+|+-.++. ..-+||+||+...
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 6777889999999876542 2368999999874
No 115
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=50.11 E-value=9.3 Score=28.86 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=11.6
Q ss_pred CceeecCCCHhhHHHHH--hhccCCC-CCCCCCcccccC
Q 015321 261 VVGVLSCRHVFHAECLE--QTTPKTQ-KSDPSCPICLRL 296 (409)
Q Consensus 261 vVaVLPCGHVFHaeCLe--qWL~k~~-~~dptCPLCR~~ 296 (409)
.++-..|.|+ +|.| .||.... .....||+|.+.
T Consensus 15 P~Rg~~C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 15 PVRGKNCKHL---QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp EEEETT--SS-----EEHHHHHHHHHHS---B-TTT---
T ss_pred CccCCcCccc---ceECHHHHHHHhhccCCeECcCCcCc
Confidence 3556679887 3432 3333211 122679999863
No 116
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=49.52 E-value=11 Score=40.78 Aligned_cols=36 Identities=25% Similarity=0.621 Sum_probs=28.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT 283 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~ 283 (409)
++..|+||...|.+ .-+|||+|-....|....+...
T Consensus 3 eelkc~vc~~f~~e-----------------piil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE-----------------PIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred ccccCceehhhccC-----------------ceEeecccHHHHHHHHhhcccC
Confidence 46789999999871 2389999999999998776543
No 117
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=8.3 Score=39.98 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=36.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCC--CCCCCCc--ccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ--KSDPSCP--ICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~--~~dptCP--LCR~~~~ 298 (409)
.....|.||...+.. .+...- ++.|+|-|-.+|+.+-+.... ...+.|| -|...+.
T Consensus 144 ~~~~~C~iC~~e~~~------------~~~~f~-~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 144 LPKEECGICFVEDPE------------AEDMFS-VLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccccCccCcccccc------------HhhhHH-HhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 457789999944431 122223 778999999999998887431 2336776 4555553
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=48.89 E-value=12 Score=38.59 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=35.1
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
..|+||.+++.. .+...+ --||||..+..|+..-... +.+||.|++.+..
T Consensus 250 ~s~p~~~~~~~~------------~d~~~l-P~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDL------------TDSNFL-PCPCGFRLCLFCHKTISDG----DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccc------------cccccc-cccccccchhhhhhccccc----CCCCCccCCcccc
Confidence 569999988751 122111 2279999999998887654 3689999988763
No 119
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=48.69 E-value=14 Score=37.52 Aligned_cols=44 Identities=27% Similarity=0.643 Sum_probs=33.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecC--CCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSC--RHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPC--GHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+...|+||.+.|. +. ++.| ||..-..|-.+-. ..||.|+..++
T Consensus 46 ~~lleCPvC~~~l~----------------~P--i~QC~nGHlaCssC~~~~~-------~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS----------------PP--IFQCDNGHLACSSCRTKVS-------NKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCc----------------cc--ceecCCCcEehhhhhhhhc-------ccCCccccccc
Confidence 57889999999987 12 3455 7888888876443 26999999998
No 120
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=47.32 E-value=6.3 Score=41.74 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=0.0
Q ss_pred ceeecCCCHhhHHHHHhhccC----C-CCCCCCCcccccCccc
Q 015321 262 VGVLSCRHVFHAECLEQTTPK----T-QKSDPSCPICLRLQEE 299 (409)
Q Consensus 262 VaVLPCGHVFHaeCLeqWL~k----~-~~~dptCPLCR~~~~~ 299 (409)
-+--||||+--+....-|-.- . +..+..||.|...+..
T Consensus 360 haF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 360 HAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -------------------------------------------
T ss_pred eeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 444599999999999999432 1 2234689999999874
No 121
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=46.49 E-value=11 Score=43.36 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=39.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeec---CCCHhhHHHHHhhccCC--CCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS---CRHVFHAECLEQTTPKT--QKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP---CGHVFHaeCLeqWL~k~--~~~dptCPLCR~~~~ 298 (409)
.+...|.||...+.. +.+...++| |+|-|.-.||..|+..- ......|++|..-++
T Consensus 94 a~s~Ss~~C~~E~S~-------------~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSP-------------DVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCC-------------cccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 466778888887761 223344555 99999999999997642 122357999988775
No 122
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=44.17 E-value=23 Score=37.14 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=28.3
Q ss_pred ceeecCCCHhhHHHHHhhccC-----CCCCCCCCcccccCccc
Q 015321 262 VGVLSCRHVFHAECLEQTTPK-----TQKSDPSCPICLRLQEE 299 (409)
Q Consensus 262 VaVLPCGHVFHaeCLeqWL~k-----~~~~dptCPLCR~~~~~ 299 (409)
-+--||||+--+.=..-|-.- .+..+..||.|...+..
T Consensus 373 haF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 373 HAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 344599999999988889542 23356899999998764
No 123
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=43.25 E-value=24 Score=29.95 Aligned_cols=57 Identities=18% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+..+.|-||.+++-- ..+++ .=|+.--|+--.-..|.+-=....+ ..||-|+..+..
T Consensus 7 ~~~qiCqiCGD~VGl---------~~~Ge-~FVAC~eC~fPvCr~CyEYErkeg~---q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGL---------TENGE-VFVACHECAFPVCRPCYEYERKEGN---QVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B----------SSSS-B--S-SSS-----HHHHHHHHHTS----SB-TTT--B---
T ss_pred cCCcccccccCcccc---------CCCCC-EEEEEcccCCccchhHHHHHhhcCc---ccccccCCCccc
Confidence 567889999998761 11222 2244556888888899988777665 589999998875
No 124
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=43.11 E-value=17 Score=37.95 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=33.3
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCH--hhHHHHHhhccCCCC--CCCCCcccccCc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV--FHAECLEQTTPKTQK--SDPSCPICLRLQ 297 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV--FHaeCLeqWL~k~~~--~dptCPLCR~~~ 297 (409)
....|++=+..|.-.+ -.++.+.. ....-.-|.|||| || .|-.+.+. +...||+|+..-
T Consensus 289 ~RPQCPVglnTL~~P~--~~~~~~~~-~~QP~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPS--KRRKRVVD-EKQPWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred cCCCCCcccceeeccc--cccccccc-ccCCeEEEecccccccc-----ccccccccCcccCcCCeeeeec
Confidence 3456888888776211 11122222 2223346899998 55 57554332 246899999753
No 125
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.68 E-value=7.7 Score=26.87 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=7.7
Q ss_pred CCCcccccCc
Q 015321 288 PSCPICLRLQ 297 (409)
Q Consensus 288 ptCPLCR~~~ 297 (409)
..||+|...-
T Consensus 18 ~~CP~Cg~~~ 27 (33)
T cd00350 18 WVCPVCGAPK 27 (33)
T ss_pred CcCcCCCCcH
Confidence 4799998754
No 126
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=42.51 E-value=23 Score=32.72 Aligned_cols=54 Identities=17% Similarity=0.527 Sum_probs=34.7
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHH-HhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECL-EQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCL-eqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|-||.+.-. +++.+.+.+ =||=...-.|- +.|- ... ..|.||+|+..+..
T Consensus 79 ~lYeCnIC~etS~------ee~FLKPne-------CCgY~iCn~Cya~LWK-~~~-~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSA------EERFLKPNE-------CCGYSICNACYANLWK-FCN-LYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccc------hhhcCCccc-------ccchHHHHHHHHHHHH-Hcc-cCCCCCcccccccc
Confidence 4567999988755 234444333 38876666665 5563 222 34899999999863
No 127
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=42.44 E-value=13 Score=38.68 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=36.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
-+...|+||++.-. . ...+-.-|-||.-.|+-+.+.+. ..||+=..+..
T Consensus 298 ~~~~~CpvClk~r~--------------N--ptvl~vSGyVfCY~Ci~~Yv~~~----~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQ--------------N--PTVLEVSGYVFCYPCIFSYVVNY----GHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccC--------------C--CceEEecceEEeHHHHHHHHHhc----CCCCccCCcch
Confidence 46778999987744 1 12244679999999999999854 48998666654
No 128
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=40.77 E-value=23 Score=26.61 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.4
Q ss_pred cccccccccchh
Q 015321 232 TFKCGLCERFLS 243 (409)
Q Consensus 232 ~~~CaICle~L~ 243 (409)
...|+.|.+.|+
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 467999998665
No 129
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=39.94 E-value=12 Score=34.67 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=24.1
Q ss_pred hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 271 FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 271 FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
||..||+.=|......+..||.|......
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 89999999887766667899999987654
No 130
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.42 E-value=6.5 Score=38.08 Aligned_cols=52 Identities=27% Similarity=0.490 Sum_probs=39.2
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeec--------CCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS--------CRHVFHAECLEQTTPKTQKSDPSCPICLRL 296 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP--------CGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 296 (409)
....|.||...+.. +...-+-+++. |||..-..|++.-+.... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~-----------n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~---~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSE-----------NDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG---IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhc-----------cccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh---hcCCcccce
Confidence 34679999988872 11233455667 999999999999987654 689999975
No 131
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.91 E-value=15 Score=39.29 Aligned_cols=44 Identities=27% Similarity=0.602 Sum_probs=33.4
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|.||..... .++-+|- |.-|+.+|+..+ ..||+|......
T Consensus 478 ~~~~~~~~~~~~~------------------~~~~~~~---~~~~l~~~~~~~----~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 478 PNDVCAICYQEMS------------------ARITPCS---HALCLRKWLYVQ----EVCPLCHTYMKE 521 (543)
T ss_pred ccCcchHHHHHHH------------------hcccccc---chhHHHhhhhhc----cccCCCchhhhc
Confidence 4567999976651 2344666 999999999876 489999988864
No 132
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=37.81 E-value=31 Score=40.62 Aligned_cols=56 Identities=21% Similarity=0.487 Sum_probs=39.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
...+.|-||.+++.- ..+++ +=|+---|+--....|.|-=..+.+ ..||-|+..+.
T Consensus 13 ~~~~~c~iCGd~vg~---------~~~Ge-~FVAC~eC~fpvCr~cyeye~~~g~---~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGV---------KEDGQ-PFVACHVCGFPVCKPCYEYERSEGN---QCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCc---------CCCCC-EEEEeccCCCccccchhhhhhhcCC---ccCCccCCchh
Confidence 577899999999761 12222 2354556887799999966555544 58999999997
No 133
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=37.28 E-value=30 Score=35.11 Aligned_cols=56 Identities=21% Similarity=0.476 Sum_probs=33.8
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCC-----CCCCCcccccCcc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK-----SDPSCPICLRLQE 298 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~-----~dptCPLCR~~~~ 298 (409)
..|-||.+.+.|... .+..... --|+=++|..||-.-+..... ....||.|.+.+.
T Consensus 183 ~~celc~~ei~e~~~------~~a~c~~----~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDW------SRATCPN----PDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccc------eeccCCC----CCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 589999999853211 0111110 139999999999883322111 1257999999663
No 134
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=35.77 E-value=13 Score=29.02 Aligned_cols=31 Identities=26% Similarity=0.720 Sum_probs=22.1
Q ss_pred eecCC-CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 264 VLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 264 VLPCG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
...|. |..-..||...+...+ .||||..++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~----~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSD----RCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSS----EETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhcccc----CCCcccCcCc
Confidence 44676 9999999999998764 8999998764
No 135
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=35.74 E-value=15 Score=41.28 Aligned_cols=50 Identities=22% Similarity=0.589 Sum_probs=38.7
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
-...|+||...+.+ . ..+.|-|.|-.-|+..-|...+. .-.||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~--------------p---~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKE--------------P---SLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeec--------------c---chhhhhHHHHhhhhhceeeccCc-cccchhhhhhhh
Confidence 46789999999872 1 36689999999999887765431 357999998876
No 136
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.00 E-value=23 Score=37.05 Aligned_cols=53 Identities=25% Similarity=0.530 Sum_probs=36.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.....|++=.+.-+ .+++.+ .|.||||.-.+-|++--..+ .....||-|-..-
T Consensus 334 Hs~FiCPVlKe~~t-------------~ENpP~-ml~CgHVIskeal~~LS~nG-~~~FKCPYCP~~~ 386 (396)
T COG5109 334 HSLFICPVLKELCT-------------DENPPV-MLECGHVISKEALSVLSQNG-VLSFKCPYCPEMS 386 (396)
T ss_pred cceeeccccHhhhc-------------ccCCCe-eeeccceeeHHHHHHHhhcC-cEEeeCCCCCcch
Confidence 35678888765544 244444 78999999999999875443 2346799996543
No 137
>PLN02189 cellulose synthase
Probab=34.10 E-value=29 Score=40.77 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=39.4
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
...+.|.||.+++.- ...++ .=|+---|+--....|.|-=-.+.+ ..||-|+..|.
T Consensus 32 ~~~~~C~iCgd~vg~---------~~~g~-~fvaC~~C~fpvCr~Cyeyer~eg~---q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGL---------TVDGD-LFVACNECGFPVCRPCYEYERREGT---QNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCc---------CCCCC-EEEeeccCCCccccchhhhhhhcCC---ccCcccCCchh
Confidence 567799999999761 11222 2244446888889999976555544 58999999996
No 138
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=30.30 E-value=26 Score=34.66 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=36.6
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|-+|.+.+-| .++--.||=-||..|+++.|.+. +.||-|..-+..
T Consensus 180 nlk~Cn~Ch~LvIq----------------g~rCg~c~i~~h~~c~qty~q~~----~~cphc~d~w~h 228 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQ----------------GIRCGSCNIQYHRGCIQTYLQRR----DICPHCGDLWTH 228 (235)
T ss_pred HHHHHhHhHHHhhe----------------eeccCcccchhhhHHHHHHhccc----CcCCchhcccCc
Confidence 55689999877642 23334677889999999999874 589999766543
No 139
>PLN02436 cellulose synthase A
Probab=29.77 E-value=42 Score=39.74 Aligned_cols=57 Identities=19% Similarity=0.448 Sum_probs=39.5
Q ss_pred CCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 229 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 229 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
....+.|-||.+++.- ...++ .=|+---|+--....|.|-=-.+.+ ..||-|+..|.
T Consensus 33 ~~~~~iCqICGD~Vg~---------t~dGe-~FVACn~C~fpvCr~Cyeyer~eg~---~~Cpqckt~Y~ 89 (1094)
T PLN02436 33 ELSGQTCQICGDEIEL---------TVDGE-PFVACNECAFPVCRPCYEYERREGN---QACPQCKTRYK 89 (1094)
T ss_pred ccCCccccccccccCc---------CCCCC-EEEeeccCCCccccchhhhhhhcCC---ccCcccCCchh
Confidence 3567799999999851 11222 1244445887789999976555544 58999999996
No 140
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=28.83 E-value=28 Score=35.05 Aligned_cols=48 Identities=29% Similarity=0.528 Sum_probs=32.0
Q ss_pred ccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015321 239 ERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 239 le~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
.+.|..++||+-..|+- | +..-.|||||-.+=|.+.+.... ...||+=
T Consensus 172 ~e~fs~rdPis~~~I~n----P-viSkkC~HvydrDsI~~~l~~~~--~i~CPv~ 219 (262)
T KOG2979|consen 172 QEVFSNRDPISKKPIVN----P-VISKKCGHVYDRDSIMQILCDEI--TIRCPVL 219 (262)
T ss_pred hhhhcccCchhhhhhhc----h-hhhcCcCcchhhhhHHHHhccCc--eeecccc
Confidence 44555667776444333 3 33558999999999999997632 2568863
No 141
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=28.83 E-value=53 Score=38.88 Aligned_cols=57 Identities=21% Similarity=0.456 Sum_probs=39.6
Q ss_pred CCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 229 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 229 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
....+.|-||.+++.- ..+++ .=|+---||---...|.|-=-.+.+ ..||-|+..|.
T Consensus 14 ~~~~qiCqICGD~vg~---------~~~Ge-~FVAC~eC~FPVCrpCYEYEr~eG~---q~CPqCktrYk 70 (1079)
T PLN02638 14 HGGGQVCQICGDNVGK---------TVDGE-PFVACDVCAFPVCRPCYEYERKDGN---QSCPQCKTKYK 70 (1079)
T ss_pred ccCCceeeecccccCc---------CCCCC-EEEEeccCCCccccchhhhhhhcCC---ccCCccCCchh
Confidence 3577899999999761 12222 2244446777788999976555544 58999999996
No 142
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=28.33 E-value=12 Score=34.52 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=26.4
Q ss_pred cCCCHhhHHHHHhhccCCC-------CCCCCCcccccCcccCCCCchhhhh
Q 015321 266 SCRHVFHAECLEQTTPKTQ-------KSDPSCPICLRLQEENSPDQQVFSR 309 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~-------~~dptCPLCR~~~~~~~~~q~~~~~ 309 (409)
.|||.| +.||.... ..-.+||+|-.....+..--|.+.+
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v~~ 54 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAVAT 54 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCeecC
Confidence 467877 77887532 1226899999998876665555543
No 143
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=28.33 E-value=12 Score=38.67 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=10.9
Q ss_pred cCCCHhhHHHHHhhc
Q 015321 266 SCRHVFHAECLEQTT 280 (409)
Q Consensus 266 PCGHVFHaeCLeqWL 280 (409)
.=-||||.+|..-.+
T Consensus 111 Aqd~VYHl~CF~C~i 125 (383)
T KOG4577|consen 111 AQDFVYHLHCFACFI 125 (383)
T ss_pred hhcceeehhhhhhHh
Confidence 457999999974433
No 144
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.20 E-value=13 Score=27.90 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=14.8
Q ss_pred HHHhhccCCCCCCCCCcccccCcccCCCCchhhhh
Q 015321 275 CLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSR 309 (409)
Q Consensus 275 CLeqWL~k~~~~dptCPLCR~~~~~~~~~q~~~~~ 309 (409)
-+.+++..-...+..||+|.+.+.+..- +-++..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~e~~-~~li~~ 41 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDEEHR-QELIKK 41 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-HHHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCHHHH-HHHHHH
Confidence 3444443322223489999999975333 444433
No 145
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=27.05 E-value=10 Score=40.61 Aligned_cols=41 Identities=27% Similarity=0.587 Sum_probs=0.0
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCC
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 302 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~ 302 (409)
+.|..|.+.+. .+|++ .||-+||..| .+|-+|.+.++...+
T Consensus 335 ekC~~Cg~~I~-------d~iLr----------A~GkayHp~C------------F~Cv~C~r~ldgipF 375 (468)
T KOG1701|consen 335 EKCNKCGEPIM-------DRILR----------ALGKAYHPGC------------FTCVVCARCLDGIPF 375 (468)
T ss_pred HHHhhhhhHHH-------HHHHH----------hcccccCCCc------------eEEEEeccccCCccc
No 146
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.01 E-value=49 Score=34.64 Aligned_cols=55 Identities=24% Similarity=0.491 Sum_probs=38.1
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCC----CCCc--ccccCcccC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSD----PSCP--ICLRLQEEN 300 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~d----ptCP--LCR~~~~~~ 300 (409)
.....|.||.+.+. . .+..+.|||.|-..|....+.++-..+ .+|| -|...+++.
T Consensus 68 ~~~~~c~ic~~~~~--------------~--~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 68 KGDVQCGICVESYD--------------G--EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred CccccCCcccCCCc--------------c--hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 45678999988875 1 345679999999999999887642222 3455 577766543
No 147
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=23.64 E-value=41 Score=27.33 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=18.2
Q ss_pred CCCCCceeecCCCHhhHHHHHhhcc
Q 015321 257 GDMPVVGVLSCRHVFHAECLEQTTP 281 (409)
Q Consensus 257 ~D~~vVaVLPCGHVFHaeCLeqWL~ 281 (409)
.+.+-|+.|.|||.=|..=--.|..
T Consensus 7 ee~hWVA~L~CGH~QHvRH~PPw~~ 31 (61)
T PF12088_consen 7 EEGHWVAELSCGHTQHVRHDPPWQN 31 (61)
T ss_pred ccCCEEEEecccccccccCCCCCcc
Confidence 3567799999999988765444443
No 148
>PLN02400 cellulose synthase
Probab=22.73 E-value=61 Score=38.43 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=39.1
Q ss_pred CCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 229 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 229 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
....+.|-||.+++-- ..+++ .=|+---|+---...|.|-=-.+.+ ..||-|+..+.
T Consensus 33 ~~~gqiCqICGD~VG~---------t~dGe-~FVAC~eCaFPVCRpCYEYERkeGn---q~CPQCkTrYk 89 (1085)
T PLN02400 33 NLNGQICQICGDDVGV---------TETGD-VFVACNECAFPVCRPCYEYERKDGT---QCCPQCKTRYR 89 (1085)
T ss_pred ccCCceeeecccccCc---------CCCCC-EEEEEccCCCccccchhheecccCC---ccCcccCCccc
Confidence 3577899999999761 12222 2255556777788899965444443 58999999996
No 149
>PLN02195 cellulose synthase A
Probab=22.02 E-value=66 Score=37.78 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=39.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
..+.|.||.+++.- ..+++ +=|+---|+---...|.|-=-.+.+ ..||-|+..|.
T Consensus 5 ~~~~c~~cgd~~~~---------~~~g~-~fvaC~eC~~pvCrpCyeyer~eg~---q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGV---------DSNGE-AFVACHECSYPLCKACLEYEIKEGR---KVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCc---------CCCCC-eEEEeccCCCccccchhhhhhhcCC---ccCCccCCccc
Confidence 45689999998761 12222 2355557888899999976555544 58999999998
No 150
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=56 Score=36.89 Aligned_cols=50 Identities=30% Similarity=0.585 Sum_probs=36.0
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCC-HhhHHHHHhhccCCC--CCCCCCcccccCcccC
Q 015321 234 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRH-VFHAECLEQTTPKTQ--KSDPSCPICLRLQEEN 300 (409)
Q Consensus 234 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGH-VFHaeCLeqWL~k~~--~~dptCPLCR~~~~~~ 300 (409)
.|+||-..+. .++.-.||| ..-+.|.-+.....+ +....||+|+..++.+
T Consensus 2 ~c~ic~~s~~-----------------~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPD-----------------FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCcc-----------------ccccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 5999976554 455668999 899999887754332 2236789999988754
No 151
>PRK11827 hypothetical protein; Provisional
Probab=20.15 E-value=47 Score=26.62 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=19.1
Q ss_pred CCCcccccCcccCCCCc-------hhhhhhhccCCcccc
Q 015321 288 PSCPICLRLQEENSPDQ-------QVFSRLKNSFPRLRQ 319 (409)
Q Consensus 288 ptCPLCR~~~~~~~~~q-------~~~~~lr~~~p~l~~ 319 (409)
..||+|+..+.-....+ .+..-+|+++|.|-.
T Consensus 9 LaCP~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVlL~ 47 (60)
T PRK11827 9 IACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLE 47 (60)
T ss_pred eECCCCCCcCeEcCCCCeEECCccCeeccccCCccccCH
Confidence 47999998886433333 333445666666543
Done!