Query 015321
Match_columns 409
No_of_seqs 187 out of 667
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 99.5 2E-14 7E-19 117.2 3.7 76 231-306 24-101 (114)
2 1x4j_A Ring finger protein 38; 99.4 1.4E-13 4.6E-18 105.2 3.1 52 230-299 21-72 (75)
3 2ecl_A Ring-box protein 2; RNF 99.4 2.3E-13 7.7E-18 106.9 3.9 63 230-299 13-76 (81)
4 1iym_A EL5; ring-H2 finger, ub 99.4 2.2E-13 7.4E-18 97.8 2.6 49 231-297 4-53 (55)
5 2kiz_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 101.1 3.2 51 231-299 13-63 (69)
6 2ep4_A Ring finger protein 24; 99.3 2.4E-13 8.1E-18 103.2 2.4 51 231-299 14-64 (74)
7 2l0b_A E3 ubiquitin-protein li 99.3 3.5E-13 1.2E-17 107.5 2.6 51 230-298 38-88 (91)
8 3dpl_R Ring-box protein 1; ubi 99.3 5.1E-13 1.7E-17 111.6 3.4 65 230-298 35-100 (106)
9 2ect_A Ring finger protein 126 99.3 4.2E-13 1.4E-17 102.8 2.0 52 230-299 13-64 (78)
10 2ecm_A Ring finger and CHY zin 99.3 6.3E-13 2.2E-17 95.1 2.2 51 231-298 4-54 (55)
11 2ea6_A Ring finger protein 4; 99.2 2.8E-12 9.4E-17 94.9 3.1 56 230-299 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.2 2.1E-12 7.2E-17 96.5 2.2 56 230-299 8-63 (71)
13 2d8t_A Dactylidin, ring finger 99.2 4.1E-12 1.4E-16 96.3 2.8 49 230-299 13-61 (71)
14 2xeu_A Ring finger protein 4; 99.2 3.3E-12 1.1E-16 93.3 2.0 55 231-299 2-56 (64)
15 4a0k_B E3 ubiquitin-protein li 99.2 2.4E-12 8.1E-17 110.0 0.3 64 231-298 47-111 (117)
16 2ct2_A Tripartite motif protei 99.2 1.4E-11 5E-16 95.2 4.4 56 230-299 13-68 (88)
17 2ecn_A Ring finger protein 141 99.1 1.6E-11 5.4E-16 92.2 3.0 48 230-299 13-60 (70)
18 1g25_A CDK-activating kinase a 99.1 2.2E-11 7.6E-16 90.6 3.6 54 230-299 1-55 (65)
19 1chc_A Equine herpes virus-1 r 99.1 8.2E-12 2.8E-16 93.0 1.1 49 231-299 4-52 (68)
20 2d8s_A Cellular modulator of i 99.1 1.8E-11 6.2E-16 97.6 2.5 53 230-299 13-70 (80)
21 2djb_A Polycomb group ring fin 99.1 2E-11 6.7E-16 92.8 2.6 50 231-300 14-63 (72)
22 2ysl_A Tripartite motif-contai 99.1 7.9E-11 2.7E-15 88.6 5.3 52 230-299 18-69 (73)
23 2csy_A Zinc finger protein 183 99.1 2.8E-11 9.5E-16 93.6 2.8 60 231-311 14-74 (81)
24 2ecy_A TNF receptor-associated 99.1 3.8E-11 1.3E-15 89.6 2.9 50 230-299 13-62 (66)
25 4ayc_A E3 ubiquitin-protein li 99.0 4.3E-11 1.5E-15 101.8 2.3 49 231-300 52-100 (138)
26 4ap4_A E3 ubiquitin ligase RNF 99.0 8E-11 2.7E-15 96.1 2.7 55 231-299 6-60 (133)
27 3fl2_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 97.0 3.1 49 231-299 51-99 (124)
28 2egp_A Tripartite motif-contai 99.0 1E-10 3.4E-15 89.0 2.3 53 230-299 10-65 (79)
29 1t1h_A Gspef-atpub14, armadill 99.0 1.3E-10 4.6E-15 88.8 2.7 50 230-299 6-55 (78)
30 2ysj_A Tripartite motif-contai 99.0 3E-10 1E-14 83.8 4.4 46 230-293 18-63 (63)
31 3lrq_A E3 ubiquitin-protein li 99.0 7.4E-11 2.5E-15 95.5 0.8 50 231-299 21-70 (100)
32 2ecj_A Tripartite motif-contai 99.0 2E-10 6.8E-15 82.6 2.9 46 230-293 13-58 (58)
33 2yur_A Retinoblastoma-binding 99.0 1.2E-10 4.2E-15 89.1 1.6 50 230-298 13-63 (74)
34 2ecw_A Tripartite motif-contai 98.9 2.3E-10 7.9E-15 87.2 2.4 52 231-299 18-71 (85)
35 2y43_A E3 ubiquitin-protein li 98.9 1.5E-10 5.2E-15 92.5 1.4 49 231-299 21-69 (99)
36 2ct0_A Non-SMC element 1 homol 98.9 8E-10 2.7E-14 87.8 5.1 56 230-303 13-68 (74)
37 2ckl_A Polycomb group ring fin 98.9 2.7E-10 9.2E-15 92.6 2.3 50 231-300 14-63 (108)
38 2ckl_B Ubiquitin ligase protei 98.9 2.5E-10 8.6E-15 99.1 2.1 50 231-299 53-102 (165)
39 2ecv_A Tripartite motif-contai 98.9 2.1E-10 7.3E-15 87.4 1.3 53 230-299 17-71 (85)
40 3l11_A E3 ubiquitin-protein li 98.9 2.7E-10 9.1E-15 93.4 1.8 49 230-298 13-61 (115)
41 4ap4_A E3 ubiquitin ligase RNF 98.9 3.5E-10 1.2E-14 92.3 1.8 56 230-299 70-125 (133)
42 3ztg_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 87.9 2.6 50 230-298 11-61 (92)
43 1z6u_A NP95-like ring finger p 98.9 7.8E-10 2.7E-14 96.4 3.7 50 231-300 77-126 (150)
44 1jm7_A BRCA1, breast cancer ty 98.8 9.9E-10 3.4E-14 88.5 2.1 51 231-299 20-70 (112)
45 3hct_A TNF receptor-associated 98.7 1.9E-09 6.5E-14 89.2 1.5 50 230-299 16-65 (118)
46 1rmd_A RAG1; V(D)J recombinati 98.7 2.6E-09 8.8E-14 87.6 2.2 50 231-300 22-71 (116)
47 1e4u_A Transcriptional repress 98.6 1.1E-08 3.8E-13 80.9 3.2 54 230-299 9-62 (78)
48 1bor_A Transcription factor PM 98.6 5.1E-09 1.7E-13 76.9 -0.5 45 231-299 5-49 (56)
49 2y1n_A E3 ubiquitin-protein li 98.6 1.6E-08 5.6E-13 101.5 2.6 48 232-299 332-379 (389)
50 1jm7_B BARD1, BRCA1-associated 98.6 7.7E-09 2.6E-13 85.4 0.0 46 231-299 21-67 (117)
51 3knv_A TNF receptor-associated 98.5 1.2E-08 4.2E-13 88.1 0.8 49 230-298 29-77 (141)
52 4ic3_A E3 ubiquitin-protein li 98.5 3.3E-08 1.1E-12 76.3 1.6 44 231-299 23-67 (74)
53 2kr4_A Ubiquitin conjugation f 98.4 5.3E-08 1.8E-12 77.3 2.2 48 231-299 13-60 (85)
54 2kre_A Ubiquitin conjugation f 98.4 7.5E-08 2.6E-12 79.1 2.9 49 230-299 27-75 (100)
55 2c2l_A CHIP, carboxy terminus 98.4 5.1E-08 1.7E-12 88.4 1.7 50 230-299 206-255 (281)
56 1wgm_A Ubiquitin conjugation f 98.4 9.6E-08 3.3E-12 78.2 3.1 48 231-299 21-69 (98)
57 2vje_A E3 ubiquitin-protein li 98.4 9.6E-08 3.3E-12 72.2 1.8 49 230-299 6-57 (64)
58 3hcs_A TNF receptor-associated 98.3 9.8E-08 3.3E-12 82.9 1.5 50 230-299 16-65 (170)
59 2yu4_A E3 SUMO-protein ligase 98.3 1.8E-07 6.1E-12 75.3 2.4 50 230-296 5-59 (94)
60 2vje_B MDM4 protein; proto-onc 98.2 2.3E-07 7.9E-12 69.9 1.5 48 231-299 6-56 (63)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.2 2.6E-07 8.7E-12 70.1 1.7 49 231-298 5-58 (60)
62 2ecg_A Baculoviral IAP repeat- 98.2 3E-07 1E-11 70.8 1.9 44 231-299 24-68 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.2 3E-07 1E-11 92.1 0.9 90 199-299 268-373 (381)
64 2f42_A STIP1 homology and U-bo 98.1 1.1E-06 3.7E-11 80.0 2.1 50 230-299 104-153 (179)
65 2yho_A E3 ubiquitin-protein li 98.0 1.2E-06 4.1E-11 68.9 1.5 44 231-299 17-61 (79)
66 1wim_A KIAA0161 protein; ring 98.0 1.3E-06 4.4E-11 69.5 0.8 52 231-296 4-61 (94)
67 2ea5_A Cell growth regulator w 98.0 1.9E-06 6.6E-11 66.1 1.7 45 230-299 13-58 (68)
68 3t6p_A Baculoviral IAP repeat- 97.9 2.5E-06 8.5E-11 84.0 0.7 44 231-299 294-338 (345)
69 3htk_C E3 SUMO-protein ligase 97.9 3.9E-06 1.3E-10 81.0 2.0 52 230-299 179-232 (267)
70 2bay_A PRE-mRNA splicing facto 97.7 6.7E-06 2.3E-10 62.3 1.0 46 233-299 4-50 (61)
71 3nw0_A Non-structural maintena 97.4 6.7E-05 2.3E-09 70.4 3.8 54 231-302 179-232 (238)
72 3vk6_A E3 ubiquitin-protein li 97.2 0.00011 3.7E-09 62.2 1.9 47 234-299 3-49 (101)
73 2lri_C Autoimmune regulator; Z 92.0 0.15 5.1E-06 39.4 4.1 32 266-297 29-60 (66)
74 1wil_A KIAA1045 protein; ring 91.2 0.2 6.9E-06 41.6 4.2 52 229-295 12-75 (89)
75 2k16_A Transcription initiatio 91.2 0.1 3.5E-06 40.2 2.3 55 230-298 16-70 (75)
76 1f62_A Transcription factor WS 89.4 0.24 8.3E-06 35.5 2.9 31 266-296 20-50 (51)
77 2l5u_A Chromodomain-helicase-D 85.0 0.48 1.6E-05 35.6 2.4 31 266-296 28-58 (61)
78 1we9_A PHD finger family prote 83.8 0.19 6.4E-06 37.6 -0.3 55 231-298 5-60 (64)
79 2ysm_A Myeloid/lymphoid or mix 81.8 0.4 1.4E-05 39.3 0.9 51 230-294 5-55 (111)
80 2yql_A PHD finger protein 21A; 81.8 0.24 8.2E-06 36.5 -0.4 49 230-295 7-55 (56)
81 1weu_A Inhibitor of growth fam 81.2 1.4 4.8E-05 36.2 3.9 30 267-298 57-87 (91)
82 2jun_A Midline-1; B-BOX, TRIM, 80.8 0.67 2.3E-05 36.6 1.8 36 231-280 2-38 (101)
83 1wev_A Riken cDNA 1110020M19; 77.8 0.31 1.1E-05 39.2 -0.9 33 266-298 38-74 (88)
84 3u5n_A E3 ubiquitin-protein li 77.7 0.52 1.8E-05 42.6 0.4 32 266-297 24-55 (207)
85 2yt5_A Metal-response element- 77.4 0.44 1.5E-05 35.6 -0.1 57 230-298 4-63 (66)
86 1mm2_A MI2-beta; PHD, zinc fin 76.5 0.49 1.7E-05 35.6 -0.2 32 266-297 26-57 (61)
87 1xwh_A Autoimmune regulator; P 75.8 0.57 1.9E-05 35.6 0.1 52 230-298 6-57 (66)
88 2e6r_A Jumonji/ARID domain-con 75.3 0.27 9.1E-06 40.0 -2.0 54 230-297 14-67 (92)
89 3o36_A Transcription intermedi 75.2 0.76 2.6E-05 40.6 0.7 32 266-297 21-52 (184)
90 3shb_A E3 ubiquitin-protein li 75.2 1.3 4.5E-05 35.1 2.0 31 266-296 46-77 (77)
91 2puy_A PHD finger protein 21A; 75.0 0.33 1.1E-05 36.1 -1.4 33 266-298 22-54 (60)
92 2ysm_A Myeloid/lymphoid or mix 74.3 0.44 1.5E-05 39.0 -1.0 33 266-298 74-106 (111)
93 2ko5_A Ring finger protein Z; 74.2 1 3.4E-05 38.1 1.2 47 230-299 26-73 (99)
94 2ro1_A Transcription intermedi 71.6 0.92 3.1E-05 40.8 0.4 32 266-297 19-50 (189)
95 2ku3_A Bromodomain-containing 71.2 1.9 6.5E-05 33.6 2.1 50 230-296 14-66 (71)
96 3v43_A Histone acetyltransfera 68.3 1.3 4.4E-05 36.6 0.6 30 266-295 82-111 (112)
97 1wew_A DNA-binding family prot 67.6 3.4 0.00011 32.2 2.8 34 266-299 37-75 (78)
98 1wep_A PHF8; structural genomi 67.6 2.9 9.9E-05 32.5 2.4 54 231-298 11-65 (79)
99 2e6s_A E3 ubiquitin-protein li 67.2 1.1 3.8E-05 35.4 -0.0 30 266-295 46-76 (77)
100 3asl_A E3 ubiquitin-protein li 66.4 3 0.0001 32.2 2.3 31 266-296 38-69 (70)
101 2kwj_A Zinc finger protein DPF 65.2 0.57 1.9E-05 39.0 -2.2 34 266-299 78-111 (114)
102 1wen_A Inhibitor of growth fam 65.1 3.6 0.00012 31.9 2.5 30 267-298 37-67 (71)
103 2l43_A N-teminal domain from h 64.7 2.3 7.8E-05 34.2 1.3 51 230-298 23-77 (88)
104 2lv9_A Histone-lysine N-methyl 63.9 1.5 5.3E-05 35.7 0.2 30 266-296 47-76 (98)
105 1fp0_A KAP-1 corepressor; PHD 63.8 2.3 7.9E-05 34.8 1.2 33 266-298 42-74 (88)
106 1wem_A Death associated transc 63.4 1.5 5.2E-05 33.8 0.1 53 232-299 16-73 (76)
107 3lqh_A Histone-lysine N-methyl 62.4 0.6 2E-05 42.5 -2.8 57 232-298 2-65 (183)
108 1weo_A Cellulose synthase, cat 59.5 8.6 0.00029 32.1 3.9 57 230-299 14-70 (93)
109 2ri7_A Nucleosome-remodeling f 58.1 1.8 6.2E-05 37.6 -0.4 53 231-297 7-60 (174)
110 2lbm_A Transcriptional regulat 55.4 6.6 0.00022 34.6 2.7 30 266-295 80-116 (142)
111 2xb1_A Pygopus homolog 2, B-ce 55.2 1.1 3.8E-05 37.1 -2.2 54 232-298 3-63 (105)
112 3ask_A E3 ubiquitin-protein li 53.3 2.9 9.8E-05 39.5 0.1 31 266-296 194-225 (226)
113 1wee_A PHD finger family prote 52.4 1.6 5.6E-05 33.4 -1.4 53 231-298 15-68 (72)
114 3v43_A Histone acetyltransfera 51.9 7.6 0.00026 32.0 2.4 51 232-294 5-62 (112)
115 3o70_A PHD finger protein 13; 49.9 2.5 8.7E-05 32.5 -0.7 51 230-296 17-67 (68)
116 2kwj_A Zinc finger protein DPF 45.6 5.1 0.00017 33.2 0.4 54 233-294 2-59 (114)
117 3i2d_A E3 SUMO-protein ligase 45.0 8.7 0.0003 38.7 2.0 36 261-298 262-299 (371)
118 1x4i_A Inhibitor of growth pro 44.2 7.8 0.00027 29.9 1.2 27 269-297 30-56 (70)
119 3m62_A Ubiquitin conjugation f 42.5 10 0.00034 42.6 2.2 48 231-299 890-938 (968)
120 2kgg_A Histone demethylase jar 42.4 1.6 5.6E-05 31.6 -2.7 48 234-294 4-52 (52)
121 4fo9_A E3 SUMO-protein ligase 39.9 12 0.00039 37.7 2.0 48 233-298 216-265 (360)
122 2vnf_A ING 4, P29ING4, inhibit 38.3 3.9 0.00013 30.6 -1.3 27 267-295 31-58 (60)
123 2rsd_A E3 SUMO-protein ligase 38.1 2.6 9E-05 32.0 -2.3 30 266-295 31-64 (68)
124 3brd_D Protein LIN-12; protein 36.8 9.9 0.00034 25.7 0.6 13 82-94 11-23 (29)
125 3c6w_A P28ING5, inhibitor of g 35.8 4.7 0.00016 30.1 -1.2 27 267-295 30-57 (59)
126 4gne_A Histone-lysine N-methyl 33.7 12 0.00041 31.3 0.9 32 266-299 34-65 (107)
127 2cu8_A Cysteine-rich protein 2 33.0 12 0.00042 27.7 0.7 41 231-299 8-48 (76)
128 2g6q_A Inhibitor of growth pro 31.9 6 0.00021 29.9 -1.2 28 267-296 32-60 (62)
129 3ql9_A Transcriptional regulat 31.6 18 0.00062 31.3 1.7 31 266-296 74-111 (129)
130 2gmg_A Hypothetical protein PF 31.1 21 0.00071 30.3 1.9 25 266-299 72-96 (105)
131 2vpb_A Hpygo1, pygopus homolog 30.8 19 0.00064 27.4 1.4 52 231-295 7-65 (65)
132 3mjh_B Early endosome antigen 30.3 12 0.0004 25.9 0.2 14 230-243 3-16 (34)
133 2co8_A NEDD9 interacting prote 29.0 12 0.00043 28.5 0.2 41 230-298 13-53 (82)
134 2jmi_A Protein YNG1, ING1 homo 28.6 8 0.00027 31.6 -1.0 25 269-295 50-75 (90)
135 2zet_C Melanophilin; complex, 28.1 4.5 0.00016 35.8 -2.8 73 231-318 67-140 (153)
136 1m3v_A FLIN4, fusion of the LI 27.8 32 0.0011 28.0 2.4 39 232-298 5-43 (122)
137 2dar_A PDZ and LIM domain prot 26.8 12 0.00042 28.8 -0.2 41 230-299 23-63 (90)
138 2dj7_A Actin-binding LIM prote 25.2 15 0.00052 28.0 0.0 41 230-298 13-53 (80)
139 1zfo_A LAsp-1; LIM domain, zin 24.3 13 0.00046 24.3 -0.4 28 233-276 4-31 (31)
140 2l4z_A DNA endonuclease RBBP8, 22.4 22 0.00075 29.5 0.5 41 230-298 59-99 (123)
141 1x64_A Alpha-actinin-2 associa 22.0 36 0.0012 26.0 1.6 41 230-299 23-63 (89)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.46 E-value=2e-14 Score=117.18 Aligned_cols=76 Identities=25% Similarity=0.390 Sum_probs=49.3
Q ss_pred CcccccccccchhccCCCccccccc-CCCCCCceeecCCCHhhHHHHHhhccCCC-CCCCCCcccccCcccCCCCchh
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVR-SGDMPVVGVLSCRHVFHAECLEQTTPKTQ-KSDPSCPICLRLQEENSPDQQV 306 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~-~~D~~vVaVLPCGHVFHaeCLeqWL~k~~-~~dptCPLCR~~~~~~~~~q~~ 306 (409)
....|+||++.|.....+....... .....++.+++|||+||.+||++|+.... ....+||+||..+..+.++||-
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 3458999999997422111110000 00112455789999999999999995321 1236899999999887776654
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=105.25 Aligned_cols=52 Identities=29% Similarity=0.620 Sum_probs=43.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. +...+.+|+|||+||.+||++|+... .+||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~--------------~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE--------------SRQLLRVLPCNHEFHAKCVDKWLKAN----RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECC--------------BTCEEEEETTTEEEETTHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccC--------------CCCeEEEECCCCHhHHHHHHHHHHcC----CcCcCcCCcCCC
Confidence 46678999999987 33457789999999999999999765 489999998864
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.3e-13 Score=106.93 Aligned_cols=63 Identities=19% Similarity=0.380 Sum_probs=45.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|.+.+|-+..... ..+.+.+| +|||+||.+||++||... .+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~---~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENK---QEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTC---TTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccC---CCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCCcch
Confidence 3567799999998765554433221 12234455 599999999999999875 389999998753
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.35 E-value=2.2e-13 Score=97.81 Aligned_cols=49 Identities=33% Similarity=0.668 Sum_probs=40.3
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
+...|+||++.|. +.+.+..|+ |||+||.+||++|+.+. .+||+||+.+
T Consensus 4 ~~~~C~IC~~~~~--------------~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELE--------------DGEEARFLPRCGHGFHAECVDMWLGSH----STCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCC--------------TTSCCEECSSSCCEECTTHHHHTTTTC----CSCSSSCCCS
T ss_pred CCCcCccCCcccc--------------CCCceEECCCCCCcccHHHHHHHHHcC----CcCcCCCCEe
Confidence 5568999999987 333456777 99999999999999764 4899999876
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=3.3e-13 Score=101.13 Aligned_cols=51 Identities=33% Similarity=0.619 Sum_probs=42.7
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|+||++.|. +...+.+|+|||+||.+||.+|+... .+||+||..+..
T Consensus 13 ~~~~C~IC~~~~~--------------~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILE--------------EGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCC--------------SSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBSCS
T ss_pred CCCCCeeCCcccc--------------CCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccccC
Confidence 5668999999986 33356789999999999999999875 379999999875
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-13 Score=103.17 Aligned_cols=51 Identities=24% Similarity=0.516 Sum_probs=42.8
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|+||++.|. +...+.+|+|||+||.+||++|+... .+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~--------------~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFK--------------PRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCC--------------SSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred CCCCCcCCCcccC--------------CCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 5678999999987 33456788999999999999999765 389999998864
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-13 Score=107.53 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=42.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.....|+||++.|. +...+.+|+|||+||.+||++|+.+. .+||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~--------------~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYV--------------KGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECC--------------TTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCBSS
T ss_pred CCCCCCcccChhhc--------------CCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCccCC
Confidence 35678999999987 33457789999999999999999764 48999998875
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.32 E-value=5.1e-13 Score=111.58 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=47.1
Q ss_pred CCcccccccccchhccCCCcccccc-cCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIV-RSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv-~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+....|+||++.|...++.+..... ..++...+..|+|||+||.+||++||... .+||+||..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC----SBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC----CcCcCCCCcce
Confidence 3567899999999876654432110 11233357788999999999999999864 48999999864
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=4.2e-13 Score=102.75 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=43.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.....|+||++.|. +...+.+|+|||+||.+||.+|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYA--------------LGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCC--------------TTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--------------CCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCccCC
Confidence 35678999999987 33456788999999999999999754 489999999874
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.29 E-value=6.3e-13 Score=95.14 Aligned_cols=51 Identities=25% Similarity=0.586 Sum_probs=41.7
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+...|+||++.|.+ ....+.+++|||+||.+||++|+... .+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~-------------~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-------------SRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCT-------------TTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCSSC
T ss_pred CCCcCcccChhhcC-------------CCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCcCC
Confidence 56789999999861 22356788999999999999999875 48999998764
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=94.91 Aligned_cols=56 Identities=25% Similarity=0.555 Sum_probs=43.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|.... .....+.+++|||+||.+||++|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~----------~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIV----------QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHT----------TTTCCEEECSSSCEEEHHHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccc----------cccCCeEeCCCCChhcHHHHHHHHHcC----CCCCCCCCccCc
Confidence 46778999999987210 012344678999999999999999764 489999998753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.23 E-value=2.1e-12 Score=96.52 Aligned_cols=56 Identities=27% Similarity=0.581 Sum_probs=43.8
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|... + .....+.+++|||+||.+||++|+... .+||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~--------~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEI--------V--QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHH--------H--TTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhcc--------c--cccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCccCh
Confidence 4677899999998721 0 012345688999999999999999765 489999999874
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4.1e-12 Score=96.27 Aligned_cols=49 Identities=22% Similarity=0.454 Sum_probs=41.1
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. ...+++|||+||.+||++|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~-----------------~~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV-----------------HPVSLPCKHVFCYLCVKGASWLG----KRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS-----------------SEEEETTTEEEEHHHHHHCTTCS----SBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC-----------------CCEEccCCCHHHHHHHHHHHHCC----CcCcCcCchhCH
Confidence 46778999999886 13467999999999999999765 489999999864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=3.3e-12 Score=93.25 Aligned_cols=55 Identities=24% Similarity=0.572 Sum_probs=42.5
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|... +. ....+.+++|||+||.+||++|+... .+||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHH--------HH--TTCCEEEETTSCEEEHHHHHHHHHHC----SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCc--------cc--cCCCEEeCCCCCchhHHHHHHHHHcC----CCCCCCCccCCc
Confidence 456899999998721 00 11345688999999999999999764 489999999874
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.18 E-value=2.4e-12 Score=109.98 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=1.1
Q ss_pred CcccccccccchhccCCCccccccc-CCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVR-SGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~-~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
....|+||++.|...++.+...... .++...+..++|+|+||.+||++||..+ .+||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC----CcCCCCCCeee
Confidence 5578999999998655544221000 1222345567999999999999999875 48999999864
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=95.19 Aligned_cols=56 Identities=20% Similarity=0.583 Sum_probs=43.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|.. ......+|+|||+||.+||++|+.... ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~-------------~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTE-------------EQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCT-------------TSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccc-------------cCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccc
Confidence 466789999999871 111255789999999999999997641 23689999998864
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=92.19 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=40.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.+. + .+++|||+||.+||.+|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~----~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA--------------D----LILPCAHSFCQKCIDKWSDRH----RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC--------------S----EEETTTEEECHHHHHHSSCCC----SSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCcc--------------C----cccCCCCcccHHHHHHHHHCc----CcCCCcCCcccC
Confidence 35678999999876 2 578999999999999999853 589999998864
No 18
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.2e-11 Score=90.59 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=41.5
Q ss_pred CCccccccccc-chhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCER-FLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle-~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
++...|+||++ .|.. ....+.+++|||+||.+||++|+.+.. ..||+|++.+..
T Consensus 1 m~~~~C~IC~~~~~~~-------------~~~~~~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 55 (65)
T 1g25_A 1 MDDQGCPRCKTTKYRN-------------PSLKLMVNVCGHTLCESCVDLLFVRGA---GNCPECGTPLRK 55 (65)
T ss_dssp CCTTCCSTTTTHHHHC-------------SSCCEEECTTCCCEEHHHHHHHHHTTS---SSCTTTCCCCSS
T ss_pred CCCCcCCcCCCCccCC-------------CccCeecCCCCCHhHHHHHHHHHHcCC---CcCCCCCCcccc
Confidence 45678999999 7761 111234679999999999999986543 589999999875
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.13 E-value=8.2e-12 Score=93.05 Aligned_cols=49 Identities=27% Similarity=0.564 Sum_probs=40.4
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|+||++.+. + .+.+++|||+||.+||.+|+... .+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~--------------~--~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS--------------N--YSMALPCLHAFCYVCITRWIRQN----PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC--------------S--CEEETTTTEEESTTHHHHHHHHS----CSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc--------------C--CcEecCCCCeeHHHHHHHHHhCc----CcCcCCChhhHh
Confidence 4567999999876 1 24678999999999999999765 489999998863
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.8e-11 Score=97.62 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=42.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|.||++++. +...+ ++||. |+||.+||++||...+ +.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGD--------------DESPL-ITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCC--------------SSSCE-ECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCcccc--------------CCCee-EeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeec
Confidence 46678999999886 12233 68996 9999999999998753 3589999999864
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2e-11 Score=92.75 Aligned_cols=50 Identities=22% Similarity=0.594 Sum_probs=40.6
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
+...|+||++.|. + .+.+++|||+||.+||++|+... ..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLI--------------D--ATTITECLHTFCKSCIVRHFYYS----NRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCS--------------S--CEECSSSCCEECHHHHHHHHHHC----SSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHH--------------C--cCEECCCCCHHHHHHHHHHHHcC----CcCCCcCcccCcc
Confidence 5678999999886 2 34345999999999999999764 4899999998753
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=7.9e-11 Score=88.57 Aligned_cols=52 Identities=21% Similarity=0.506 Sum_probs=41.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. ...+|+|||+||.+||.+|+.... ....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~-----------------~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ-----------------KPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS-----------------SEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC-----------------CeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCc
Confidence 35678999999886 133679999999999999997321 23689999999864
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=2.8e-11 Score=93.62 Aligned_cols=60 Identities=27% Similarity=0.605 Sum_probs=44.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC-CCCchhhhh
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN-SPDQQVFSR 309 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~-~~~q~~~~~ 309 (409)
....|+||++.|. + ..+++|||+||..||.+|+... ..||+|+..+... .++..++.+
T Consensus 14 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~~l~~~ 72 (81)
T 2csy_A 14 IPFRCFICRQAFQ--------------N---PVVTKCRHYFCESCALEHFRAT----PRCYICDQPTGGIFNPAKELMAK 72 (81)
T ss_dssp CCSBCSSSCSBCC--------------S---EEECTTSCEEEHHHHHHHHHHC----SBCSSSCCBCCSCCEECHHHHHH
T ss_pred CCCCCcCCCchhc--------------C---eeEccCCCHhHHHHHHHHHHCC----CcCCCcCccccccCCcHHHHHHH
Confidence 4568999999986 1 2368999999999999999754 4899999998622 234445555
Q ss_pred hh
Q 015321 310 LK 311 (409)
Q Consensus 310 lr 311 (409)
++
T Consensus 73 ~~ 74 (81)
T 2csy_A 73 LQ 74 (81)
T ss_dssp HS
T ss_pred HH
Confidence 44
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.8e-11 Score=89.55 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=40.1
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.+. + ++ +++|||+||.+||++|+.+.. ..||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~-p~--~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--------------S-PK--QTECGHRFCESCMAALLSSSS---PKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEES--------------S-CC--CCSSSCCCCHHHHHHHHTTSS---CCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhc--------------C-ee--ECCCCCHHHHHHHHHHHHhCc---CCCCCCCcCCCh
Confidence 35678999999986 1 22 379999999999999996432 589999999864
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.05 E-value=4.3e-11 Score=101.76 Aligned_cols=49 Identities=22% Similarity=0.689 Sum_probs=40.1
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
+...|+||++.|. + ..+++|||+||..||.+|+... .+||+||..+...
T Consensus 52 ~~~~C~iC~~~~~--------------~---~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFI--------------E---AVTLNCAHSFCSYCINEWMKRK----IECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCS--------------S---EEEETTSCEEEHHHHHHHTTTC----SBCTTTCCBCCCE
T ss_pred ccCCCcccCcccC--------------C---ceECCCCCCccHHHHHHHHHcC----CcCCCCCCcCCCC
Confidence 3457999999886 1 3478999999999999999764 4899999998643
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=8e-11 Score=96.12 Aligned_cols=55 Identities=25% Similarity=0.593 Sum_probs=42.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|.+. +. +...+.+++|||+||.+||++|+.+. .+||+|++.+..
T Consensus 6 ~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHH--------HH--TTCCEEEETTCCEEEHHHHHHHHTTC----SBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCc--------cc--cccCeEecCCCChhhHHHHHHHHHhC----CCCCCCCCcCcc
Confidence 567899999999720 00 12345688999999999999999765 389999999874
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=97.03 Aligned_cols=49 Identities=24% Similarity=0.526 Sum_probs=40.2
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. + ...++|||+||..||.+|+.... ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--------------R---PITTVCQHNVCKDCLDRSFRAQV---FSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--------------S---EEECTTSCEEEHHHHHHHHHTTC---CBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc--------------C---cEEeeCCCcccHHHHHHHHhHCc---CCCCCCCccCCC
Confidence 5568999999986 1 23579999999999999997432 589999999975
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.00 E-value=1e-10 Score=89.02 Aligned_cols=53 Identities=23% Similarity=0.589 Sum_probs=41.4
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCC---CCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ---KSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~---~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. + + .+|+|||+||.+||.+|+.... .....||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~--------------~-p--~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT--------------E-P--LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS--------------S-C--CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC--------------C-e--eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 36678999999986 1 2 2479999999999999997631 123689999999864
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.99 E-value=1.3e-10 Score=88.76 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=40.8
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. + ..+++|||+|+..||++|+.+.. .+||+|+..+..
T Consensus 6 ~~~~~C~IC~~~~~--------------~---Pv~~~CgH~fc~~Ci~~~~~~~~---~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMK--------------D---PVIVSTGQTYERSSIQKWLDAGH---KTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCS--------------S---EEEETTTEEEEHHHHHHHHTTTC---CBCTTTCCBCSS
T ss_pred cccCCCCCcccccc--------------C---CEEcCCCCeecHHHHHHHHHHCc---CCCCCCcCCCCh
Confidence 36778999999886 1 23579999999999999997633 589999999864
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3e-10 Score=83.77 Aligned_cols=46 Identities=24% Similarity=0.618 Sum_probs=35.9
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
.+...|+||++.|. + ..+|+|||+||.+||++|+.... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ--------------K---PVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS--------------S---CEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhC--------------C---eEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 36678999999886 1 23579999999999999997421 23589998
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.97 E-value=7.4e-11 Score=95.49 Aligned_cols=50 Identities=18% Similarity=0.449 Sum_probs=41.1
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. ..+..++|||+||..||.+|+.... ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~----------------~p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR----------------DARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS----------------SEEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred CCCCCccCCcccc----------------CccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcCCH
Confidence 5678999999987 1343489999999999999998753 589999999863
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2e-10 Score=82.65 Aligned_cols=46 Identities=26% Similarity=0.751 Sum_probs=35.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 293 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 293 (409)
.+...|+||++.|. + + .+|+|||+||.+||++|+...+ ....||+|
T Consensus 13 ~~~~~C~IC~~~~~--------------~-p--~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--------------E-P--VIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS--------------S-C--CCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred ccCCCCccCCcccC--------------c-c--EeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 35678999999987 1 1 2579999999999999975421 23689998
No 33
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.96 E-value=1.2e-10 Score=89.15 Aligned_cols=50 Identities=22% Similarity=0.683 Sum_probs=39.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+...|+||++.|. + ..+|+ |||+||..||++|+.... ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~--------------~---p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT--------------D---AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT--------------T---CEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh--------------C---CeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCC
Confidence 35678999999887 1 23578 999999999999997542 258999999754
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=2.3e-10 Score=87.19 Aligned_cols=52 Identities=19% Similarity=0.533 Sum_probs=40.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCC--CCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ--KSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~--~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. + ..+++|||+||.+||.+|+.... .....||+|+..+..
T Consensus 18 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLK--------------E---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCS--------------S---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhC--------------c---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 5678999999886 1 12689999999999999997631 113689999999864
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.5e-10 Score=92.50 Aligned_cols=49 Identities=22% Similarity=0.648 Sum_probs=39.6
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. + .+..++|||+||..||.+|+... ..||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN--------------I--AMIIPQCSHNYCSLCIRKFLSYK----TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS--------------S--EEECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCG
T ss_pred CCCCcccCChhhC--------------C--cCEECCCCCHhhHHHHHHHHHCC----CCCCCCCCcCCh
Confidence 4567999999987 1 23234899999999999999754 489999999874
No 36
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=8e-10 Score=87.82 Aligned_cols=56 Identities=21% Similarity=0.507 Sum_probs=42.8
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCCC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPD 303 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~~ 303 (409)
.....|+||.+.|.+ ...-..|+|.||.+||.+||.... ..+||+|+..+....++
T Consensus 13 ~~i~~C~IC~~~i~~----------------g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ----------------GQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSSCBCSSSCCBCSS----------------SEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCCC
T ss_pred CCCCcCcchhhHccc----------------CCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCCC
Confidence 466789999999872 112228999999999999997653 25899999998754443
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.92 E-value=2.7e-10 Score=92.58 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=40.8
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
+...|+||++.|. + .+.+++|||+||..||.+|+... ..||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--------------D--ATTIIECLHSFCKTCIVRYLETS----KYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCS--------------S--EEEETTTCCEEEHHHHHHHHTSC----SBCTTTCCBSCSS
T ss_pred CcCCCccCChHHh--------------C--cCEeCCCCChhhHHHHHHHHHhC----CcCcCCCcccccc
Confidence 5678999999987 1 24334999999999999999764 5899999998753
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=2.5e-10 Score=99.06 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.5
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. + .+.+++|||+||.+||++|+.... ..||+|+..+..
T Consensus 53 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLK--------------N--TMTTKECLHRFCADCIITALRSGN---KECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCS--------------S--EEEETTTCCEEEHHHHHHHHHTTC---CBCTTTCCBCCS
T ss_pred CCCCCcccChHhh--------------C--cCEeCCCCChhHHHHHHHHHHhCc---CCCCCCCCcCCC
Confidence 5568999999987 2 343459999999999999998643 589999999853
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.1e-10 Score=87.40 Aligned_cols=53 Identities=28% Similarity=0.674 Sum_probs=40.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC--CCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT--QKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~--~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. + ..+|+|||+||.+||.+|+... ......||+|+..+..
T Consensus 17 ~~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLT--------------Q---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCS--------------S---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccC--------------C---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 35678999999886 1 2257999999999999998761 0113689999999874
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.91 E-value=2.7e-10 Score=93.36 Aligned_cols=49 Identities=29% Similarity=0.702 Sum_probs=40.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+...|+||++.|. + ..+|+|||+||..||.+|+.+.. ..||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILV--------------E---PVTLPCNHTLCKPCFQSTVEKAS---LCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCS--------------S---CEECTTSCEECHHHHCCCCCTTT---SBCTTTCCBCH
T ss_pred CCCCCCccCCcccC--------------c---eeEcCCCCHHhHHHHHHHHhHCc---CCCCCCCcccC
Confidence 35678999999886 1 23679999999999999997643 68999999985
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=3.5e-10 Score=92.29 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=43.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|.+. +. ....+..++|||+||..||++|+... .+||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHH--------HH--TTCCEEEETTSBEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccc--------cc--cCcceEeCCCCChhhHHHHHHHHHcC----CCCCCCCCcCCh
Confidence 3567899999998721 00 12234678999999999999999765 489999999875
No 42
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.88 E-value=5.3e-10 Score=87.86 Aligned_cols=50 Identities=22% Similarity=0.683 Sum_probs=40.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+...|+||++.|. + ..+++ |||+|+..||++|+.... ...||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~--------------~---p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT--------------D---AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS--------------S---CEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc--------------C---ceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 46778999999886 1 23678 999999999999997532 258999999973
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.88 E-value=7.8e-10 Score=96.38 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=40.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
+...|+||++.|. + ..+++|||+||..||.+|+.... ..||+||..+...
T Consensus 77 ~~~~C~IC~~~~~--------------~---pv~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--------------Q---PVTTECFHNVCKDCLQRSFKAQV---FSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--------------S---EEECTTSCEEEHHHHHHHHHTTC---CBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc--------------C---CEEcCCCCchhHHHHHHHHHhCC---CcCCCCCccCCCC
Confidence 4568999999886 1 23589999999999999998643 5899999999754
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=9.9e-10 Score=88.53 Aligned_cols=51 Identities=20% Similarity=0.628 Sum_probs=39.8
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. + + .+++|||+||..||.+|+.... ...+||+|+..+..
T Consensus 20 ~~~~C~IC~~~~~--------------~-p--~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK--------------E-P--VSTKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS--------------S-C--CBCTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc--------------C-e--EECCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCCH
Confidence 4557999999886 1 1 2479999999999999997642 22589999998864
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.74 E-value=1.9e-09 Score=89.21 Aligned_cols=50 Identities=20% Similarity=0.506 Sum_probs=41.1
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. + ..+++|||+|+..||.+|+.... .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALR--------------E---AVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCS--------------S---EEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhc--------------C---eEECCcCChhhHHHHHHHHhhCC---CCCCCCCCCcCH
Confidence 46678999999886 1 23579999999999999998653 489999999875
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.74 E-value=2.6e-09 Score=87.61 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=40.6
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 300 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 300 (409)
+...|+||++.|. + ..+++|||+||..||.+|+.... .+||+|+..+...
T Consensus 22 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILA--------------D---PVETSCKHLFCRICILRCLKVMG---SYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCS--------------S---EEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhc--------------C---cEEcCCCCcccHHHHHHHHhHCc---CcCCCCCCCCCHh
Confidence 4568999999886 1 22479999999999999998643 5899999998753
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.65 E-value=1.1e-08 Score=80.92 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=40.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.+.. +...+..++|||.|+..||.+++.... ..||+||+.+..
T Consensus 9 ~~~~~CpICle~~~~-------------~d~~~~p~~CGH~fC~~Cl~~~~~~~~---~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI-------------DDINFFPCTCGYQICRFCWHRIRTDEN---GLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCT-------------TTTTCCSSTTSCCCCHHHHHHHTTSSC---SBCTTTCCBCSS
T ss_pred ccCCcCCccCccCcc-------------ccccccccCCCCCcCHHHHHHHHhcCC---CCCCCCCCccCC
Confidence 466789999998851 111222234999999999999986533 689999999974
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=5.1e-09 Score=76.86 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=36.5
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. + ..+|+|||+|+..||.+|. ..||+||..+..
T Consensus 5 ~~~~C~IC~~~~~--------------~---p~~l~CgH~fC~~Ci~~~~-------~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAK--------------C---PKLLPCLHTLCSGCLEASG-------MQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCB--------------C---CSCSTTSCCSBTTTCSSSS-------SSCSSCCSSSSC
T ss_pred cCCCceEeCCccC--------------C---eEEcCCCCcccHHHHccCC-------CCCCcCCcEeec
Confidence 5667999999886 1 2368999999999999852 479999998863
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.56 E-value=1.6e-08 Score=101.54 Aligned_cols=48 Identities=21% Similarity=0.448 Sum_probs=39.3
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
...|+||++.+. .+..+||||+||..||.+|+.... ..||+||..+..
T Consensus 332 ~~~C~ICle~~~-----------------~pv~lpCGH~FC~~Ci~~wl~~~~---~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-----------------DVKIEPCGHLMCTSCLTSWQESEG---QGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-----------------CEEEETTCCEECHHHHHHHHHHTC---SBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-----------------CeEEeCCCChhhHHHHHHHHhcCC---CCCCCCCCccCC
Confidence 468999998875 245789999999999999997322 589999998864
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=7.7e-09 Score=85.42 Aligned_cols=46 Identities=26% Similarity=0.751 Sum_probs=37.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. + .+ ++ +|||+|+..||.+|+. ..||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~--------------~--pv-~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILR--------------E--PV-CLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCS--------------S--CB-CCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhh--------------C--cc-EeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 4567999999886 1 23 45 9999999999999996 379999999853
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.54 E-value=1.2e-08 Score=88.11 Aligned_cols=49 Identities=18% Similarity=0.497 Sum_probs=39.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+...|+||++.|. + .+ .++|||+|+..||.+|+.... ..||+||..+.
T Consensus 29 ~~~~~C~IC~~~~~--------------~--pv-~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLR--------------R--PF-QAQCGHRYCSFCLASILSSGP---QNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCS--------------S--EE-ECTTSCEEEHHHHHHHGGGSC---EECHHHHHTTC
T ss_pred CcCcCCCCCChhhc--------------C--cE-ECCCCCccCHHHHHHHHhcCC---CCCCCCCCccc
Confidence 36778999999987 1 22 479999999999999997543 58999999763
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.47 E-value=3.3e-08 Score=76.27 Aligned_cols=44 Identities=20% Similarity=0.545 Sum_probs=36.5
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|.||++.+. .+..|||||. |+..|+.+| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-----------------AIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-----------------CEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 4568999998876 2447799999 999999999 169999998864
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.45 E-value=5.3e-08 Score=77.35 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=40.1
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. | .| +++|||+|-..||++|+... .+||+|+..+..
T Consensus 13 ~~~~CpI~~~~m~--------------d--PV-~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMT--------------D--PV-RLPSGTVMDRSIILRHLLNS----PTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCS--------------S--EE-ECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred hheECcccCchhc--------------C--Ce-ECCCCCEECHHHHHHHHhcC----CCCCCCcCCCCh
Confidence 5788999999987 1 22 67899999999999999853 589999998864
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.44 E-value=7.5e-08 Score=79.12 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=40.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
-+...|+||++.|. | .| +++|||+|-..||++|+... .+||+|+..+..
T Consensus 27 p~~~~CpI~~~~m~--------------d--PV-~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT--------------D--PV-RLPSGTIMDRSIILRHLLNS----PTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS--------------S--EE-EETTTEEEEHHHHHHHTTSC----SBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc--------------C--Ce-ECCCCCEEchHHHHHHHHcC----CCCCCCCCCCCh
Confidence 36789999999987 1 23 67999999999999999743 689999998864
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=5.1e-08 Score=88.35 Aligned_cols=50 Identities=6% Similarity=0.096 Sum_probs=41.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. | .| +++|||+|...||++|+.... .+||+|+..+..
T Consensus 206 ~~~~~c~i~~~~~~--------------d--Pv-~~~~gh~f~~~~i~~~~~~~~---~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR--------------E--PC-ITPSGITYDRKDIEEHLQRVG---HFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS--------------S--EE-ECSSCCEEETTHHHHHHHHTC---SSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhc--------------C--Ce-ECCCCCEECHHHHHHHHHHCC---CCCcCCCCCCch
Confidence 46789999999987 1 23 679999999999999998643 369999999863
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.42 E-value=9.6e-08 Score=78.21 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=40.3
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.|. | .| +++|| |+|-..||++|+... .+||+|+..+..
T Consensus 21 ~~~~CpI~~~~m~--------------d--PV-~~~cG~htf~r~cI~~~l~~~----~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC--------------D--PV-VLPSSRVTVDRSTIARHLLSD----QTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS--------------S--EE-ECTTTCCEEEHHHHHHHTTTS----CBCTTTCSBCCT
T ss_pred HhcCCcCcccccc--------------C--Ce-ECCCCCeEECHHHHHHHHHhC----CCCCCCCCCCCh
Confidence 6778999999987 1 23 57999 999999999999763 589999998864
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.37 E-value=9.6e-08 Score=72.18 Aligned_cols=49 Identities=14% Similarity=0.397 Sum_probs=38.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceee--cCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--PCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|.||++... + +..+ ||||+ |-.+|+++|.... ..||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~--------------~---~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPK--------------N---GCIVHGKTGHLMACFTCAKKLKKRN----KPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCS--------------C---EEEEETTEEEEEECHHHHHHHHHTT----CCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCC--------------C---EEEECCCCCChhhHHHHHHHHHHcC----CcCCCcCcchhc
Confidence 35678999998765 1 2344 99999 7899999998754 489999998864
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.34 E-value=9.8e-08 Score=82.95 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=41.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|+||++.|. + .+ .++|||+|+..||.+|+.... .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~--------------~--pv-~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALR--------------E--AV-QTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCS--------------S--EE-ECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhc--------------C--cE-ECCCCCHHHHHHHHHHHHhCC---CCCCCCccCcch
Confidence 46778999999987 1 23 479999999999999997643 489999999875
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.8e-07 Score=75.27 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=38.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCC--CCCCCCcc--cccC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQ--KSDPSCPI--CLRL 296 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~--~~dptCPL--CR~~ 296 (409)
.....|+||++.|. | .| +++ |||+|...||++|+...+ ....+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~--------------d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--------------K--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS--------------S--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc--------------C--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46778999999987 2 23 565 999999999999997631 12368999 9865
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.25 E-value=2.3e-07 Score=69.87 Aligned_cols=48 Identities=23% Similarity=0.420 Sum_probs=38.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceee--cCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--PCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|.||++... ...++ ||||+ |-.+|+.+|..+. ..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~-----------------~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPR-----------------DGNIIHGRTGHLVTCFHCARRLKKAG----ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBS-----------------CEEEEETTEEEEEECHHHHHHHHHTT----CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCC-----------------CeEEEecCCCCHhHHHHHHHHHHHhC----CcCCCcCchhhc
Confidence 4567999998754 12345 99998 9999999998654 489999999864
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.25 E-value=2.6e-07 Score=70.11 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=36.5
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCC--C---HhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR--H---VFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG--H---VFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
+...|.||++... .+ . ++||. | .||.+||++|+.... +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~---------------~~-l-~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG---------------NE-R-FRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS---------------CC-C-CCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC---------------Cc-e-ecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 5568999987632 12 2 57865 4 999999999997532 268999999875
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=3e-07 Score=70.75 Aligned_cols=44 Identities=20% Similarity=0.545 Sum_probs=34.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|.||++.+. .+..+||||+ |..+|+++. ..||+||..+..
T Consensus 24 ~~~~C~IC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-----------------AIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-----------------CBCCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-----------------CEEEecCCCHHHHHHHhhCC--------CCCccCCceecC
Confidence 4557999998875 1336799999 999999754 379999998864
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.17 E-value=3e-07 Score=92.13 Aligned_cols=90 Identities=22% Similarity=0.388 Sum_probs=52.8
Q ss_pred ccccCCCCCh----hhhccc-C--CCCCcccccCCCCCCCcccccccccchhccCCCcccccccCCCCCCc--eeecCCC
Q 015321 199 AHRWSSASSS----VDFADV-S--EPFESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVV--GVLSCRH 269 (409)
Q Consensus 199 ~~~ws~asS~----~d~~di-~--e~~~~es~~~~~s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vV--aVLPCGH 269 (409)
-..|....+- ++++++ + .....+....-........|+||+..+.. .+..+.. .-+.|||
T Consensus 268 l~~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECaICys~~l~-----------~g~lPdk~C~n~~C~h 336 (381)
T 3k1l_B 268 LSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLD-----------GGEVPLVSCDNAKCVL 336 (381)
T ss_dssp HHTCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCSSSCCSSCT-----------TCCCCCBCCSCTTCCC
T ss_pred hhhcCccCCHHHHHHHHhCccccCCCcccccccccccccCCccCcccceeecC-----------CCCCccccccCCccCC
Confidence 4578776555 446666 2 22222211000111356689999988762 1222221 1347999
Q ss_pred HhhHHHHHhhccCCC----C---CCCCCcccccCccc
Q 015321 270 VFHAECLEQTTPKTQ----K---SDPSCPICLRLQEE 299 (409)
Q Consensus 270 VFHaeCLeqWL~k~~----~---~dptCPLCR~~~~~ 299 (409)
.||..||.+||.... . -..+||.|++.+..
T Consensus 337 ~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 337 KCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 999999999996421 0 01479999998864
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.06 E-value=1.1e-06 Score=80.01 Aligned_cols=50 Identities=6% Similarity=0.086 Sum_probs=40.8
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
-+...|+||++.|. | .| +++|||+|-..||+.|+.... .+||+|+..+..
T Consensus 104 p~~f~CPI~~elm~--------------D--PV-~~~~Ghtfer~~I~~~l~~~~---~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR--------------E--PC-ITPSGITYDRKDIEEHLQRVG---HFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS--------------S--EE-ECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred cHhhcccCccccCC--------------C--Ce-ECCCCCEECHHHHHHHHHhCC---CCCCCCcCCCCh
Confidence 36789999999987 2 23 569999999999999997643 379999998864
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.02 E-value=1.2e-06 Score=68.87 Aligned_cols=44 Identities=25% Similarity=0.514 Sum_probs=36.3
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|.||++.+. .+..+||||+ |-.+|+..|. .||+||..+..
T Consensus 17 ~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEI-----------------NSTFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCE
T ss_pred CCCEeEEeCcccC-----------------cEEEECCCCHHHHHHHHHhcC--------cCCCCCchhhC
Confidence 3457999998765 2557899999 9999999883 69999999875
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.97 E-value=1.3e-06 Score=69.51 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=37.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC----CCCCCCCcc--cccC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT----QKSDPSCPI--CLRL 296 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~----~~~dptCPL--CR~~ 296 (409)
....|+||++.+. +...+..++|||.|..+||.+++... ......||. |+..
T Consensus 4 ~~~~C~IC~~~~~--------------~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYP--------------VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCB--------------GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccc--------------cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999876 11123334799999999999998642 112358999 9988
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=1.9e-06 Score=66.07 Aligned_cols=45 Identities=24% Similarity=0.636 Sum_probs=36.1
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.+...|.||++... .+..|||||+ |..+|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-----------------NWVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC-----------------CCEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC-----------------CEEEECCCChhhhHHHHhcC--------CCCCCCCcchhc
Confidence 35678999997754 3557899999 999999942 379999999875
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.86 E-value=2.5e-06 Score=84.03 Aligned_cols=44 Identities=25% Similarity=0.586 Sum_probs=36.8
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+||++.+. .+..|||||. |+..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~-----------------~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV-----------------SVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC-----------------CEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC-----------------ceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 5678999998876 2446799999 999999999 169999999864
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.86 E-value=3.9e-06 Score=81.03 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=41.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcc--cccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPI--CLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPL--CR~~~~~ 299 (409)
.....|+||++.|. +.|....|||+|-..||.+|+.... ..+||+ |++.+..
T Consensus 179 ~~el~CPIcl~~f~----------------DPVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE----------------APLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS----------------SEEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc----------------CCeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCch
Confidence 46678999999997 2354569999999999999997532 258999 9998753
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.73 E-value=6.7e-06 Score=62.25 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=38.0
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
..|+||++.+. | .| ++ +|||+|-.+||++|+.+. .+||+++..+..
T Consensus 4 ~~CpIs~~~m~--------------d--PV-~~~~sG~~yer~~I~~~l~~~----~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR--------------R--PV-LSPKSRTIFEKSLLEQYVKDT----GNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS--------------S--EE-EETTTTEEEEHHHHHHHHHHH----SBCTTTCCBCCG
T ss_pred EEecCCCCCCC--------------C--CE-EeCCCCcEEcHHHHHHHHHhC----CCCcCCcCCCCh
Confidence 57999999986 2 23 55 899999999999999865 379999998864
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.45 E-value=6.7e-05 Score=70.41 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=39.9
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCC
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 302 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~ 302 (409)
....|.||.+.+.+ + +.=-.|+|.||.+|+..|+.... ...||.|+..+....|
T Consensus 179 ~i~~C~iC~~iv~~------------g----~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQ------------G----QSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSS------------C----EECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhC------------C----cccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCC
Confidence 46789999988762 0 11113999999999999997542 3689999999975443
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.20 E-value=0.00011 Score=62.24 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=38.5
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 234 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 234 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
-|.+|.-++. -..+.+||.|+|--+|+..|..++. .+||+|+..+..
T Consensus 3 fC~~C~~Pi~----------------iygRmIPCkHvFCydCa~~~~~~~~---k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK----------------VYGRMIPCKHVFCYDCAILHEKKGD---KMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS----------------EEEEEETTCCEEEHHHHHHHHHTTC---CBCTTTCCBCSE
T ss_pred ecCccCCCeE----------------EEeeeccccccHHHHHHHHHHhccC---CCCcCcCCeeee
Confidence 5888987776 2367889999999999999986643 589999999863
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.03 E-value=0.15 Score=39.39 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=26.4
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.|...||..||+..|.+....+..||.|....
T Consensus 29 ~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 29 HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 69999999999988877655568999998654
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.20 E-value=0.2 Score=41.56 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=32.0
Q ss_pred CCCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhh------------ccCCCCCCCCCccccc
Q 015321 229 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT------------TPKTQKSDPSCPICLR 295 (409)
Q Consensus 229 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqW------------L~k~~~~dptCPLCR~ 295 (409)
...+..|.||... + ..+. ..=..|+-+||..||++. +.........||-|..
T Consensus 12 ~~~D~~C~VC~~~-t------------~~~l--~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVW-T------------AESL--FPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCC-C------------SSCC--SSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccc-c------------ccce--eccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3567789999633 2 0111 112259999999999996 2111123368999954
No 75
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.17 E-value=0.1 Score=40.20 Aligned_cols=55 Identities=18% Similarity=0.461 Sum_probs=35.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.+...|.||.+... +...|.-=.|.-.||..||..-+......+..||.|+....
T Consensus 16 ~~~~~C~~C~~~~~--------------~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD--------------GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS--------------SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC--------------CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 35567999987633 11112122589999999998766543224578999987653
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.37 E-value=0.24 Score=35.46 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=23.5
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 296 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 296 (409)
.|.-.||..||+.=+.+....+..||.|+..
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 6889999999986555443345789999764
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.02 E-value=0.48 Score=35.61 Aligned_cols=31 Identities=29% Similarity=0.716 Sum_probs=24.2
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 296 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 296 (409)
.|--.||..||..-+.+....+..||.|.+.
T Consensus 28 ~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 28 TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 5888999999998665544456899999764
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.79 E-value=0.19 Score=37.58 Aligned_cols=55 Identities=22% Similarity=0.477 Sum_probs=36.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-CCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-~~~dptCPLCR~~~~ 298 (409)
+...|+||.+.+.. +...|.--.|..-||..|+..-.... ......||.|+....
T Consensus 5 e~~~C~~C~~~~~~-------------~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 5 SSGQCGACGESYAA-------------DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SCCCCSSSCCCCCS-------------SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCccCC-------------CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 55679999988641 12223334789999999997654321 123478999987544
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.82 E-value=0.4 Score=39.26 Aligned_cols=51 Identities=20% Similarity=0.476 Sum_probs=32.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 294 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR 294 (409)
..+..|.||.+.-. ..+.+.=-.|+..||..||+..+.........||-|+
T Consensus 5 ~~~~~C~~C~~~g~--------------~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGD--------------LLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCC--------------TTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCC--------------CcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 35678999975521 0111222269999999999988764333346677765
No 80
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.76 E-value=0.24 Score=36.46 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=33.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 295 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 295 (409)
.....|.||.+. . + .+.=-.|.-.||..||..-+.+....+..||.|..
T Consensus 7 ~~~~~C~vC~~~-g--------------~--ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS-G--------------Q--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS-S--------------C--CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC-C--------------e--EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356679999753 1 1 12222689999999999766554444578999975
No 81
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.18 E-value=1.4 Score=36.18 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=21.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 267 CR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 267 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
|. .-||..|+. |......+.-||.|+....
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 66 689999998 4443334578999987654
No 82
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=80.75 E-value=0.67 Score=36.62 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=25.7
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHh-hc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ-TT 280 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeq-WL 280 (409)
+...|.||++.+. ..++..=+.|+|.|-..||+. |.
T Consensus 2 ee~~C~~C~~~~~--------------~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPA--------------QDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSC--------------CBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCC--------------CCceEECCcCChHHhHHHCHHHhc
Confidence 4567999997643 112222389999999999998 54
No 83
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.81 E-value=0.31 Score=39.20 Aligned_cols=33 Identities=18% Similarity=0.542 Sum_probs=25.0
Q ss_pred cCCCHhhHHHHHhhccC----CCCCCCCCcccccCcc
Q 015321 266 SCRHVFHAECLEQTTPK----TQKSDPSCPICLRLQE 298 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k----~~~~dptCPLCR~~~~ 298 (409)
.|...||..|+..-|.. ....+..|+.|+....
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 69999999999977652 2234578999987664
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.65 E-value=0.52 Score=42.56 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=25.3
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.|..+||..||..-+......+..||.|+..-
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 48899999999887765444457899999764
No 85
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=77.42 E-value=0.44 Score=35.63 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=34.9
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC---CCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT---QKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~---~~~dptCPLCR~~~~ 298 (409)
.....|.||.+...+ .+...+-=-.|.-.||..|+..-+... ...+..||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~------------~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSE------------APNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCB------------TTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCC------------CCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 356789999876431 011111111689999999998754320 123478999987543
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.48 E-value=0.49 Score=35.57 Aligned_cols=32 Identities=25% Similarity=0.663 Sum_probs=24.3
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.|.-.||..||..-+.+....+..||.|....
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 58899999999976655444457899998653
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.77 E-value=0.57 Score=35.56 Aligned_cols=52 Identities=19% Similarity=0.499 Sum_probs=34.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.....|.||.+. . + .+.=-.|.-.||..||..-+......+..||.|.....
T Consensus 6 ~~~~~C~vC~~~-g--------------~--ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDG-G--------------E--LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCC-S--------------S--CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCC-C--------------C--EEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 356779999753 1 1 11111588999999999665544334578999987554
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.30 E-value=0.27 Score=39.97 Aligned_cols=54 Identities=24% Similarity=0.506 Sum_probs=34.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.+...|.||.+.-. ....+.==.|...||..||..=|......+.-||.|....
T Consensus 14 ~~~~~C~vC~~~~~--------------~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDE--------------DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGG--------------GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCC--------------CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 56678999986532 0011111159999999999855544333457899998754
No 89
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=75.18 E-value=0.76 Score=40.61 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=25.3
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.|.-+||..||..-+......+..||.|+...
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 58899999999887765444457899999765
No 90
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.18 E-value=1.3 Score=35.09 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=22.8
Q ss_pred cCCCHhhHHHHHhhccCCCCCC-CCCcccccC
Q 015321 266 SCRHVFHAECLEQTTPKTQKSD-PSCPICLRL 296 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~d-ptCPLCR~~ 296 (409)
.|...||..||+.-|.+....+ ..||.|+.+
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 5889999999997766544444 689999863
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=74.98 E-value=0.33 Score=36.11 Aligned_cols=33 Identities=27% Similarity=0.602 Sum_probs=24.9
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.|.-.||..||..-+......+..||.|.....
T Consensus 22 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 22 TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 689999999999765544344578999976543
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.35 E-value=0.44 Score=39.01 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=24.7
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.|...||..||+.=+.+....+..||.|..-..
T Consensus 74 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 74 TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred CCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 689999999998665544334578999977543
No 93
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=74.25 E-value=1 Score=38.09 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=35.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
..-..|-.|-.... ..+.|. |.+...||...|...+ .||||.+.+--
T Consensus 26 ~G~~nCKsCWf~~k-------------------~LV~C~dHYLCl~CLtlmL~~Sd----rCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-------------------GLVECNNHYLCLNCLTLLLSVSN----RCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS-------------------SEEECSSCEEEHHHHHHTCSSSS----EETTTTEECCC
T ss_pred cCcccChhhccccC-------------------CeeeecchhhHHHHHHHHHhhcc----CCcccCCcCCc
Confidence 45667999954322 244554 9999999999998775 89999999853
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.55 E-value=0.92 Score=40.84 Aligned_cols=32 Identities=25% Similarity=0.600 Sum_probs=24.8
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.|--+||..||..=+......+..||.|+...
T Consensus 19 ~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 19 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 58889999999876655444557899998764
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.18 E-value=1.9 Score=33.56 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=32.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceee--cCCCHhhHHHHHhh-ccCCCCCCCCCcccccC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHVFHAECLEQT-TPKTQKSDPSCPICLRL 296 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--PCGHVFHaeCLeqW-L~k~~~~dptCPLCR~~ 296 (409)
.....|.||.+.-. +....-++ .|.-.||..|+..- +++. +.-||.|+..
T Consensus 14 ~~~~~C~vC~~~~s--------------~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g---~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGES--------------QNSNVILFCDMCNLAVHQECYGVPYIPEG---QWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCC--------------CSSSCEEECSSSCCEEEHHHHTCSSCCSS---CCCCHHHHHH
T ss_pred CCCCCCCCCCCCCC--------------CCCCCEEECCCCCCccccccCCCCcCCCC---CcCCccCcCc
Confidence 46678999986532 00111122 68899999999854 3333 4789999764
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.32 E-value=1.3 Score=36.63 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=23.8
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLR 295 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 295 (409)
.|...||..||+.-|.+....+..||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 589999999998776655444578999985
No 97
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.61 E-value=3.4 Score=32.23 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.2
Q ss_pred cCCCHhhHHHHHhhccC-----CCCCCCCCcccccCccc
Q 015321 266 SCRHVFHAECLEQTTPK-----TQKSDPSCPICLRLQEE 299 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k-----~~~~dptCPLCR~~~~~ 299 (409)
.|..-||..|+.---.. .......||.|+.....
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 69999999999754321 11234789999876543
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.59 E-value=2.9 Score=32.52 Aligned_cols=54 Identities=19% Similarity=0.396 Sum_probs=33.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-CCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-~~~dptCPLCR~~~~ 298 (409)
....| ||.+.+.. +...|.--.|.--||..|+.--.... ......||.|+...+
T Consensus 11 ~~~~C-~C~~~~d~-------------~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNV-------------NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCS-------------SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCC-------------CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34456 99887631 11223333699999999996443211 113478999998754
No 99
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.20 E-value=1.1 Score=35.41 Aligned_cols=30 Identities=27% Similarity=0.592 Sum_probs=22.6
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCccccc
Q 015321 266 SCRHVFHAECLEQTTPKTQKS-DPSCPICLR 295 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~-dptCPLCR~ 295 (409)
.|...||..||+.=|.+.... +..||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999999999655443333 578999975
No 100
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=66.39 E-value=3 Score=32.17 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=23.0
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCcccccC
Q 015321 266 SCRHVFHAECLEQTTPKTQKS-DPSCPICLRL 296 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~-dptCPLCR~~ 296 (409)
.|...||..||+.=|.+.... +..||.|+..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 588999999999655443333 5789999864
No 101
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=65.17 E-value=0.57 Score=38.99 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=25.5
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.|...||..||+.=|......+..||.|...+..
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 6899999999996555443345789999876653
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=65.08 E-value=3.6 Score=31.93 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=21.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 267 CR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 267 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
|. ..||..||. |......+.-||.|+....
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 66 689999998 4443334578999987654
No 103
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=64.72 E-value=2.3 Score=34.24 Aligned_cols=51 Identities=24% Similarity=0.457 Sum_probs=33.2
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceee---cCCCHhhHHHHHhh-ccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL---SCRHVFHAECLEQT-TPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL---PCGHVFHaeCLeqW-L~k~~~~dptCPLCR~~~~ 298 (409)
.....|.||.+.-. +. .-.+| .|.-.||..|+..- +++. +.-||.|.....
T Consensus 23 ~~~~~C~vC~~~~s--------------~~-~~~ll~CD~C~~~fH~~Cl~p~~vP~g---~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGES--------------QN-SNVILFCDMCNLAVHQECYGVPYIPEG---QWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSS--------------CS-EEEEEECSSSCCCCCHHHHTCSSCCSS---CCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCC--------------CC-CCCEEECCCCCchhhcccCCCCccCCC---ceECccccCccc
Confidence 35678999986531 00 11122 58889999999854 3333 478999987654
No 104
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.92 E-value=1.5 Score=35.70 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=21.4
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 296 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 296 (409)
.|.-.||..|+..-+... ..+..||.|+..
T Consensus 47 ~C~~w~H~~C~~~~~~~~-p~~w~C~~C~~~ 76 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHI-PDTYLCERCQPR 76 (98)
T ss_dssp TTCBEEETTTTTCCTTSC-CSSBCCTTTSSS
T ss_pred CCCCcCcCcCCCCCccCC-CCCEECCCCcCC
Confidence 699999999997543322 124789999753
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.82 E-value=2.3 Score=34.82 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=25.4
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.|--+||..||..=+......+..||.|...-.
T Consensus 42 ~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 42 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 588899999998877654445678999986643
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.44 E-value=1.5 Score=33.76 Aligned_cols=53 Identities=21% Similarity=0.535 Sum_probs=32.1
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-----CCCCCCCcccccCccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 299 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-----~~~dptCPLCR~~~~~ 299 (409)
...| ||.+... +...|.--.|.--||..|+.--.... ......||.|+...+.
T Consensus 16 ~~~C-~C~~~~~--------------~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHN--------------NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCC--------------SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccC--------------CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 3457 8987754 11223333699999999996432210 0123789999876553
No 107
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=62.36 E-value=0.6 Score=42.48 Aligned_cols=57 Identities=14% Similarity=0.350 Sum_probs=33.9
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhcc---C-C---CCCCCCCcccccCcc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTP---K-T---QKSDPSCPICLRLQE 298 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~---k-~---~~~dptCPLCR~~~~ 298 (409)
+..|+||.+.+.... .+...|.=-.|..-||..|+.---. . . ......||.|+....
T Consensus 2 G~~CpiC~k~Y~~~~----------~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDD----------YESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCC----------TTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcc----------cCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 457999999887210 0011232236899999999853210 0 0 001368999998765
No 108
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=59.51 E-value=8.6 Score=32.15 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=41.6
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
...+.|.||.+++-- ..+++ .-|+---|+--....|++--..+.+ ..||-|+..|..
T Consensus 14 ~~~qiCqiCGD~VG~---------~~~Ge-~FVAC~eC~FPvCrpCyEYErkeG~---q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGL---------TVEGD-LFVACNECGFPACRPCYEYERREGT---QNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCB---------CSSSS-BCCSCSSSCCCCCHHHHHHHHHTSC---SSCTTTCCCCCC
T ss_pred cCCCccccccCcccc---------CCCCC-EEEeeeccCChhhHHHHHHHHhccC---ccccccCCcccc
Confidence 466889999998651 11222 2244557888888999998887765 589999999974
No 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.12 E-value=1.8 Score=37.59 Aligned_cols=53 Identities=17% Similarity=0.499 Sum_probs=32.5
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC-CCCCCCCCcccccCc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK-TQKSDPSCPICLRLQ 297 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k-~~~~dptCPLCR~~~ 297 (409)
....| ||...... +...+.-=.|.-.||..|+.--... .......||.|+..-
T Consensus 7 ~~~~C-~C~~~~~~-------------~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE-------------SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECCT-------------TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCcEe-eCCCCCCC-------------CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 45568 99887531 1112222268999999999643221 112347899999765
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.36 E-value=6.6 Score=34.60 Aligned_cols=30 Identities=20% Similarity=0.544 Sum_probs=21.9
Q ss_pred cCCCHhhHHHHHhhccC-------CCCCCCCCccccc
Q 015321 266 SCRHVFHAECLEQTTPK-------TQKSDPSCPICLR 295 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k-------~~~~dptCPLCR~ 295 (409)
.|--+||..||+.=+.. ....+..||+|..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 68899999999966531 1223578999974
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=55.17 E-value=1.1 Score=37.13 Aligned_cols=54 Identities=28% Similarity=0.627 Sum_probs=32.5
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccC------CCCCCCCCcccccCcc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPK------TQKSDPSCPICLRLQE 298 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k------~~~~dptCPLCR~~~~ 298 (409)
...|+||.+++.. +...+.== .|.--||.+|+.---.. .......||.|+....
T Consensus 3 ~~~C~iC~~p~~~-------------~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVND-------------DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCT-------------TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCC-------------CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 3579999998751 11111111 57888999998643210 0112368999998654
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=53.32 E-value=2.9 Score=39.54 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=20.4
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCcccccC
Q 015321 266 SCRHVFHAECLEQTTPKTQKS-DPSCPICLRL 296 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~-dptCPLCR~~ 296 (409)
-|...||..||+.=|...... +..||.|...
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 589999999999665543333 5789999764
No 113
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=52.43 E-value=1.6 Score=33.37 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=33.0
Q ss_pred CcccccccccchhccCCCcccccccCCCC-CCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDM-PVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~-~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
....| ||..... +. ..|.--.|.--||..|+.--..........||.|+....
T Consensus 15 ~~~~C-~C~~~~~--------------~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTKDD--------------DGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCCSC--------------CSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCccC--------------CCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 34568 7987643 11 123333688899999997653322234578999986543
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.90 E-value=7.6 Score=31.96 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=29.0
Q ss_pred cccccccccchhccCCCcccccccCCCC-CCceeecCCCHhhHHHHHhh------ccCCCCCCCCCcccc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDM-PVVGVLSCRHVFHAECLEQT------TPKTQKSDPSCPICL 294 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~-~vVaVLPCGHVFHaeCLeqW------L~k~~~~dptCPLCR 294 (409)
...|.||+..=.++ + .++. +.+.=-.|+..||..||+.+ +++. +..||-|+
T Consensus 5 ~~~C~~C~~~~~~~------~---~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQN------R---EKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCC------T---TSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTC
T ss_pred CccccccCCchhhC------c---CCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCC
Confidence 45799998653210 0 0111 22322369999999999642 2222 36677775
No 115
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=49.89 E-value=2.5 Score=32.49 Aligned_cols=51 Identities=16% Similarity=0.427 Sum_probs=32.3
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 296 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 296 (409)
.+...| ||.+... +...|.=-.|.--||..|+.---... .....||.|+..
T Consensus 17 ~~~~~C-iC~~~~~--------------~~~MIqCd~C~~WfH~~Cvgi~~~~~-~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFA--------------GRPMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCT--------------TCCEEECTTTCCEEETTTTTCCTTSC-CSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCC--------------CCCEEECCCCCccccccccCcCcccC-CCcEECCCCCCC
Confidence 355678 9987654 11223333699999999997543221 234789999753
No 116
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.55 E-value=5.1 Score=33.17 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=29.3
Q ss_pred ccccccccchhccCCCcccccccCCCC-CCceeecCCCHhhHHHHHhhcc---CCCCCCCCCcccc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDM-PVVGVLSCRHVFHAECLEQTTP---KTQKSDPSCPICL 294 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~-~vVaVLPCGHVFHaeCLeqWL~---k~~~~dptCPLCR 294 (409)
..|.||+..-.+ ++ +.++. +.+.=-.|+..||..||+.... .....+..||-|+
T Consensus 2 ~~C~~C~~~~~~------n~--k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNM------NK--KSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTB------CT--TTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccc------cc--cCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 469999876431 00 01111 2222236999999999986521 1111235677764
No 117
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.05 E-value=8.7 Score=38.70 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=24.9
Q ss_pred CceeecCCCH--hhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 261 VVGVLSCRHV--FHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 261 vVaVLPCGHV--FHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.++-..|.|+ |-++-+-+...+. ....||+|.+.+.
T Consensus 262 PvRg~~C~HlQCFDl~sfL~~~~~~--~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 262 PSKSINCKHLQCFDALWFLHSQLQI--PTWQCPVCQIDIA 299 (371)
T ss_dssp EEEETTCCSSCCEEHHHHHHHHHHS--CCCBCTTTCCBCC
T ss_pred cCcCCcCCCcceECHHHHHHHhhcC--CceeCCCCCcccC
Confidence 4667789998 6666555544332 2478999999884
No 118
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.22 E-value=7.8 Score=29.95 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=19.4
Q ss_pred CHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015321 269 HVFHAECLEQTTPKTQKSDPSCPICLRLQ 297 (409)
Q Consensus 269 HVFHaeCLeqWL~k~~~~dptCPLCR~~~ 297 (409)
.-||.+|+.. .........||.|+...
T Consensus 30 ~WfH~~Cvgl--~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 30 EWFHYGCVGL--TEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCEEHHHHTC--SSCCSSCCCCHHHHHHH
T ss_pred cCCccccccc--CcCCCCCEECCCCCccc
Confidence 6899999983 33323347899998764
No 119
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=42.53 E-value=10 Score=42.56 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=38.4
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
+...|+|-++.+. | .| ++|.| ++|-..+|++||... .+||+=+..+..
T Consensus 890 ~~F~cPIs~~lM~--------------D--PV-ilpsG~~TydR~~I~~wl~~~----~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMK--------------D--PV-ILPASKMNIDRSTIKAHLLSD----STDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCS--------------S--EE-ECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCG
T ss_pred HHhCCcchhhHHh--------------C--Ce-EcCCCCEEECHHHHHHHHhcC----CCCCCCCCCCCc
Confidence 6778999988876 2 23 67998 689999999999763 599999888863
No 120
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=42.43 E-value=1.6 Score=31.61 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=28.4
Q ss_pred cccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 015321 234 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICL 294 (409)
Q Consensus 234 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~~~dptCPLCR 294 (409)
.|.||.+++.. +..-|.-- .|.-=||..|+.--.......+..||.|+
T Consensus 4 ~cc~C~~p~~~-------------~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-------------KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-------------TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-------------CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 48889887641 22223333 58888999998754322111236899985
No 121
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.94 E-value=12 Score=37.67 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=33.1
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCH--hhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV--FHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV--FHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
..|+|=...+. -.++-..|.|. |-++=+-+...+. ....||+|.+.+.
T Consensus 216 L~CPlS~~ri~----------------~P~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT----------------IPCRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS----------------SEEEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCC
T ss_pred eeCCCccceec----------------cCCcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccC
Confidence 45777766654 24667789998 7766665554433 2478999999885
No 122
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.27 E-value=3.9 Score=30.58 Aligned_cols=27 Identities=26% Similarity=0.673 Sum_probs=19.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCccccc
Q 015321 267 CR-HVFHAECLEQTTPKTQKSDPSCPICLR 295 (409)
Q Consensus 267 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~ 295 (409)
|. ..||..|+. |......+.-||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 689999998 4444334578999975
No 123
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=38.10 E-value=2.6 Score=32.03 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=18.7
Q ss_pred cCCCHhhHHHHHhhccCCC----CCCCCCccccc
Q 015321 266 SCRHVFHAECLEQTTPKTQ----KSDPSCPICLR 295 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~----~~dptCPLCR~ 295 (409)
.|.--||..|+.---.... .....||.||.
T Consensus 31 ~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 31 RCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3888899999853211110 01367999985
No 124
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=36.84 E-value=9.9 Score=25.66 Aligned_cols=13 Identities=23% Similarity=0.698 Sum_probs=9.8
Q ss_pred CCCCCCCCccccc
Q 015321 82 LSQGPQWTPPAIQ 94 (409)
Q Consensus 82 ~~q~~~wt~p~~q 94 (409)
...+|-|||||-.
T Consensus 11 ~i~A~vW~PPME~ 23 (29)
T 3brd_D 11 MINASVWMPPMEN 23 (29)
T ss_pred eecccccCCCccC
Confidence 3568999999743
No 125
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.81 E-value=4.7 Score=30.15 Aligned_cols=27 Identities=30% Similarity=0.762 Sum_probs=19.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCccccc
Q 015321 267 CR-HVFHAECLEQTTPKTQKSDPSCPICLR 295 (409)
Q Consensus 267 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~ 295 (409)
|. .-||..|+. |.+....+..||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 699999998 4443334578999975
No 126
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=33.74 E-value=12 Score=31.35 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=22.0
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.|--+||..||. |......+.-||-|.-..-.
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 377899999998 54433344679988755543
No 127
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.01 E-value=12 Score=27.73 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=28.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
....|+.|.+.+. +... +..-+..||.+|+ .|-.|.+.+..
T Consensus 8 ~~~~C~~C~~~I~--------------~~~~--v~a~~~~~H~~CF------------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVY--------------FAEK--VSSLGKDWHKFCL------------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCC--------------TTTE--EEETTEEEETTTC------------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeE--------------CCeE--EEECCeEeeCCCC------------CCCCCCCccCC
Confidence 4567999998876 2222 3356888998773 57788877753
No 128
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.89 E-value=6 Score=29.91 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=19.9
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccC
Q 015321 267 CR-HVFHAECLEQTTPKTQKSDPSCPICLRL 296 (409)
Q Consensus 267 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~~ 296 (409)
|. .-||..|+. |.........||.|+..
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 55 799999998 33333345789999764
No 129
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=31.64 E-value=18 Score=31.35 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=21.3
Q ss_pred cCCCHhhHHHHHhhcc-----CC--CCCCCCCcccccC
Q 015321 266 SCRHVFHAECLEQTTP-----KT--QKSDPSCPICLRL 296 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~-----k~--~~~dptCPLCR~~ 296 (409)
.|-.+||.+||..=+. +. ...+..|++|...
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 5889999999996421 11 1234789999653
No 130
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.07 E-value=21 Score=30.33 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=16.9
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 266 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 266 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.||++| .+.. .+ ...||.|+....+
T Consensus 72 ~CG~~F----~~~~-~k----PsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVF----KAEI-NI----PSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBC----CCCS-SC----CSSCSSSCCCCBC
T ss_pred hCcCee----cccC-CC----CCCCcCCCCCccC
Confidence 699999 1221 22 2479999999875
No 131
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=30.75 E-value=19 Score=27.44 Aligned_cols=52 Identities=23% Similarity=0.551 Sum_probs=31.1
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccC------CCCCCCCCccccc
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPK------TQKSDPSCPICLR 295 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k------~~~~dptCPLCR~ 295 (409)
....|++|.+++.. +...|.-- .|.--||..|+.---.. .......||.|.+
T Consensus 7 ~~~~C~~C~~p~~~-------------~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVND-------------DQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCT-------------TSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCC-------------CCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 45679999998761 22233333 78888999998543211 1111357998863
No 132
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.28 E-value=12 Score=25.94 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=11.8
Q ss_pred CCcccccccccchh
Q 015321 230 SDTFKCGLCERFLS 243 (409)
Q Consensus 230 ~~~~~CaICle~L~ 243 (409)
.++..|+||++.|.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 45789999999986
No 133
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.01 E-value=12 Score=28.45 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=27.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.....|+.|.+.+. +...+ ..=+.+||.+|+ .|-.|.+.+.
T Consensus 13 ~~~~~C~~C~~~I~--------------~~e~v--~a~~~~wH~~CF------------~C~~C~~~L~ 53 (82)
T 2co8_A 13 GAGDLCALCGEHLY--------------VLERL--CVNGHFFHRSCF------------RCHTCEATLW 53 (82)
T ss_dssp CSSCBCSSSCCBCC--------------TTTBC--CBTTBCCBTTTC------------BCSSSCCBCC
T ss_pred CCCCCCcccCCCcc--------------cceEE--EECCCeeCCCcC------------EEcCCCCCcC
Confidence 45678999998875 22222 245788998883 4777777665
No 134
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=28.60 E-value=8 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=17.8
Q ss_pred CHhhHHHHHhhccCCCCCCCCCcc-ccc
Q 015321 269 HVFHAECLEQTTPKTQKSDPSCPI-CLR 295 (409)
Q Consensus 269 HVFHaeCLeqWL~k~~~~dptCPL-CR~ 295 (409)
--||..||. |......+.-||. |+.
T Consensus 50 eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 50 EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 689999997 3333233578999 974
No 135
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.14 E-value=4.5 Score=35.81 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=50.0
Q ss_pred CcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc-CCCCchhhhh
Q 015321 231 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE-NSPDQQVFSR 309 (409)
Q Consensus 231 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~-~~~~q~~~~~ 309 (409)
....|++|...|.- -+...+.=..|.|-+...|- .|+.+. ....|-+|.+.-.- .-+-+|.+..
T Consensus 67 ~~~~C~~C~~~fg~------------l~~~g~~C~~C~~~VC~~C~-~~~~~~--~~W~C~vC~k~rel~~kSGeWf~~~ 131 (153)
T 2zet_C 67 NETHCARCLQPYRL------------LLNSRRQCLECSLFVCKSCS-HAHPEE--QGWLCDPCHLARVVKIGSLEWYYQH 131 (153)
T ss_dssp GGTBCTTTCCBGGG------------CSSCCEECTTTCCEECGGGE-ECCSSS--SSCEEHHHHHHHHHHHHHCHHHHHH
T ss_pred CCccchhhcCcccc------------ccCCCCcCCCCCchhhcccc-cccCCC--CcEeeHHHHHHHHHHHhccHHHHHH
Confidence 56789999999861 12222333379999999998 355443 34789999988642 2456788888
Q ss_pred hhccCCccc
Q 015321 310 LKNSFPRLR 318 (409)
Q Consensus 310 lr~~~p~l~ 318 (409)
++++|+++-
T Consensus 132 ~~~rfk~~g 140 (153)
T 2zet_C 132 VRARFKRFG 140 (153)
T ss_dssp HHTTSSSCH
T ss_pred HHhhhccCc
Confidence 888887654
No 136
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.78 E-value=32 Score=28.02 Aligned_cols=39 Identities=21% Similarity=0.491 Sum_probs=23.0
Q ss_pred cccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 232 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 232 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
...|+-|.+.+. +...+ ..-+..||.+|+ .|-.|...+.
T Consensus 5 ~~~C~~C~~~I~--------------~~~~~--~a~~~~wH~~CF------------~C~~C~~~L~ 43 (122)
T 1m3v_A 5 WKRCAGCGGKIA--------------DRFLL--YAMDSYWHSRCL------------KCSSCQAQLG 43 (122)
T ss_dssp CCCBSSSSSCCC--------------SSCCE--EETTEEECHHHH------------CCSSSCCCTT
T ss_pred CCCCcccCCEeC--------------CcEEE--EECCceeHhhCC------------CcCCCCCccc
Confidence 356888877765 22222 234777888874 3666666653
No 137
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.82 E-value=12 Score=28.76 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=28.5
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.....|+.|.+.+. + . .+..-|..||.+|+ .|-.|.+.+..
T Consensus 23 ~~~~~C~~C~~~I~--------------~-~--~v~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIR--------------G-P--FLVALGKSWHPEEF------------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCC--------------S-C--EEEETTEEECTTTC------------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEec--------------c-e--EEEECCccccccCC------------ccCCCCCCCCC
Confidence 35568999998875 1 1 23456889998874 57788887763
No 138
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.20 E-value=15 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.489 Sum_probs=27.9
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.....|+-|.+.+. +...+ ..=+..||.+|+ .|-.|...+.
T Consensus 13 ~~~~~C~~C~~~I~--------------~~~~v--~a~~~~wH~~CF------------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIK--------------HGQSL--LALDKQWHVSCF------------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCS--------------SSCCE--EETTEEECTTTC------------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeC--------------CCeEE--EECCcccccccC------------CcCcCCCCcC
Confidence 45678999998876 22233 245788998773 5777887765
No 139
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.34 E-value=13 Score=24.31 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=17.9
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHH
Q 015321 233 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECL 276 (409)
Q Consensus 233 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCL 276 (409)
..|+.|.+..-. . -.+..=|.+||..|+
T Consensus 4 ~~C~~C~k~Vy~--------------~--Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYP--------------T--EKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCG--------------G--GCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEec--------------c--eeEEECCeEecccCC
Confidence 479999877651 1 112244788998883
No 140
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.40 E-value=22 Score=29.51 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=29.0
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 298 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 298 (409)
.....|+-|.+.+. +.. .+..-+..||.+|+ .|-.|...+.
T Consensus 59 ~~~~~C~~C~~~I~--------------~~~--~v~a~~~~wH~~CF------------~C~~C~~~L~ 99 (123)
T 2l4z_A 59 LSWKRCAGCGGKIA--------------DRF--LLYAMDSYWHSRCL------------KCSSCQAQLG 99 (123)
T ss_dssp SSCSBBSSSSSBCC--------------SSS--EEEETTEEEETTTS------------BCTTTCCBGG
T ss_pred ccCCcCcCCCCCcC--------------CcE--EEEeCCcEEccccc------------CcCcCCCccc
Confidence 34578999998876 221 23456889998883 5888888875
No 141
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.01 E-value=36 Score=26.01 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=28.7
Q ss_pred CCcccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015321 230 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 299 (409)
Q Consensus 230 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 299 (409)
.....|..|.+.+. + .. +..-+.+||.+|+ .|-.|.+.+..
T Consensus 23 ~~~~~C~~C~~~I~--------------~-~~--~~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIV--------------G-AV--VKARDKYRHPECF------------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCC--------------S-CC--EESSSCEECTTTC------------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEec--------------c-cE--EEECCceECccCC------------EecCCCCCCCC
Confidence 35578999998876 2 12 3456789998883 57778877753
Done!