Query 015324
Match_columns 409
No_of_seqs 138 out of 628
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0778 Protease, Ulp1 family 99.9 1.7E-26 3.7E-31 239.9 8.6 111 283-408 286-399 (511)
2 COG5160 ULP1 Protease, Ulp1 fa 99.9 1.6E-24 3.4E-29 223.7 8.4 101 295-409 363-463 (578)
3 PLN03189 Protease specific for 99.9 3.5E-23 7.5E-28 214.1 10.9 117 283-408 254-378 (490)
4 KOG0779 Protease, Ulp1 family 99.6 2.9E-16 6.2E-21 168.3 5.7 364 8-409 10-448 (595)
5 PF02902 Peptidase_C48: Ulp1 p 99.3 8.9E-13 1.9E-17 120.8 5.9 79 330-408 1-92 (216)
6 KOG3246 Sentrin-specific cyste 98.7 1.3E-08 2.8E-13 96.9 5.5 83 314-408 15-97 (223)
7 PF15328 GCOM2: Putative GRINL 91.5 0.18 3.8E-06 48.8 3.5 37 73-109 3-41 (223)
8 KOG4439 RNA polymerase II tran 60.2 9.6 0.00021 43.1 3.9 31 82-112 210-240 (901)
9 PF15463 ECM11: Extracellular 37.4 65 0.0014 28.9 4.9 52 58-109 64-115 (139)
10 PRK00306 50S ribosomal protein 29.1 1.2E+02 0.0026 23.8 4.6 51 60-110 6-63 (66)
No 1
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-26 Score=239.95 Aligned_cols=111 Identities=28% Similarity=0.542 Sum_probs=92.5
Q ss_pred CCcCccchhhhHHHHhhhcc---ceeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 015324 283 GSLHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH 359 (409)
Q Consensus 283 ~~~~~~~~~~~~e~~~~~~e---~~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvh 359 (409)
+++.+++.+.+.++...+.. ..+.. ..+++.||..||+||.++.||||+||||||+||.++...++. .++||
T Consensus 286 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~-yp~~h 360 (511)
T KOG0778|consen 286 DSFPPLTEEREAQVQRAFSSRNSTEILV----THFNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSK-YPKVH 360 (511)
T ss_pred cccccccHHHHHHHHHHhccCCccccee----hhccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCC-CceEE
Confidence 44667777666666555531 22221 236699999999999999999999999999999999876554 89999
Q ss_pred EEcchhHHhHhhhhccCCCCCcccchhhhhhhccCCCCcccEEEEeccC
Q 015324 360 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE 408 (409)
Q Consensus 360 iFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIne 408 (409)
+||||||++|... ||.+|+|||++||||++|+||||||.
T Consensus 361 ~FnTFFy~kL~~~----------gy~~VkRWTk~v~if~~d~i~vPIH~ 399 (511)
T KOG0778|consen 361 AFNTFFYTKLVGR----------GYAGVKRWTKKVDIFDKDIIFVPIHL 399 (511)
T ss_pred EEechhhhhhhhc----------chHHHHhHhhccCccccceeEeeeec
Confidence 9999999999865 79999999999999999999999996
No 2
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-24 Score=223.66 Aligned_cols=101 Identities=33% Similarity=0.657 Sum_probs=87.6
Q ss_pred HHHhhhccceeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhc
Q 015324 295 EFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVS 374 (409)
Q Consensus 295 e~~~~~~e~~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~ 374 (409)
+...|+. . ..||.- +..+|+||..||.||.++.||||+||||||+||..+... ...+++||+||||||++|.+.
T Consensus 363 ~~~s~~~-~-~~~~~~-~~~~i~IT~~D~~~L~~~~wLNDtIIdFy~k~ls~~sk~-~s~~~~vh~FnTFFYT~Lsrr-- 436 (578)
T COG5160 363 QTPSCLK-S-SCYPFN-DRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKN-TSKREQVHLFNTFFYTKLSRR-- 436 (578)
T ss_pred hchhhhc-c-cccccc-CcCcceeehHhhhhhccccchhhHHHHHHHHHHHHhccC-cccccceEEeehhhHHHHHHH--
Confidence 4555664 3 378986 679999999999999999999999999999999666532 336789999999999999875
Q ss_pred cCCCCCcccchhhhhhhccCCCCcccEEEEeccCC
Q 015324 375 HKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409 (409)
Q Consensus 375 ~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIned 409 (409)
||++|+||++++|||+++|||||||..
T Consensus 437 --------Gy~gVrrW~kk~dif~~k~I~iPIni~ 463 (578)
T COG5160 437 --------GYSGVRRWTKKTDIFSKKYIFIPINIS 463 (578)
T ss_pred --------HhHHHHHHHhccCccccceEEEEeccc
Confidence 799999999999999999999999973
No 3
>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional
Probab=99.89 E-value=3.5e-23 Score=214.05 Aligned_cols=117 Identities=23% Similarity=0.468 Sum_probs=96.1
Q ss_pred CCcCccchhhhHHHHhhhccc----eeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcE
Q 015324 283 GSLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC 358 (409)
Q Consensus 283 ~~~~~~~~~~~~e~~~~~~e~----~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kv 358 (409)
..+.+++++++.++...|... .++.+ ++.+|+||+.||.||.|++||||+||||||+||.++....+...+++
T Consensus 254 ~~~~pLT~e~~~~V~~al~~~~~~~vlvs~---~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~ 330 (490)
T PLN03189 254 EPFIPLTREEETEVKRAFSANNRRKVLVTH---ENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKC 330 (490)
T ss_pred ccCcCCCHHHHHHHHHHhcCCCccceeeec---CCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccce
Confidence 347899999999999988532 22322 35789999999999999999999999999999998764434456799
Q ss_pred EEEcchhHHhHhhhhccCCCCCcccchhhhhhhcc----CCCCcccEEEEeccC
Q 015324 359 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKG----VNIFQKSYVLIPIHE 408 (409)
Q Consensus 359 hiFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~----vDLF~kd~I~IPIne 408 (409)
|+||||||++|.... ...+|.+|+|||++ ++||++|+||||||.
T Consensus 331 h~FNTFFytkL~~~~------~~ygY~~VrRWTk~kKigv~Lfs~D~IFIPIh~ 378 (490)
T PLN03189 331 HFFNTFFYKKLVSGK------SGYDYKAVRRWTTQKKLGYHLIDCDKIFVPIHQ 378 (490)
T ss_pred EEEehHHHHHHhhcC------CcCChHHHHHHhhhcccccccccCceEEeeeec
Confidence 999999999998751 12469999999973 689999999999996
No 4
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.9e-16 Score=168.25 Aligned_cols=364 Identities=15% Similarity=0.127 Sum_probs=214.1
Q ss_pred ccCCCcccccccccCCCCCCCCceeeeccCCCCCCCCCCCCCCCCCCCchhhcCCCCchHHHHHHHHhhhhhhccccCCC
Q 015324 8 RNKRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLP 87 (409)
Q Consensus 8 ~~k~~l~idw~~~~~~~~~~~p~l~iv~~~~~~~~~~~p~~~~~~~~d~~~~~~~~sD~eL~e~i~R~~~~l~~~~~rLp 87 (409)
..++...|.|.-++ .+..-.+.+++|-++++. .|+.+.|...+.. ..+.|..|.+.-.|..+.+..++.+.+
T Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (595)
T KOG0779|consen 10 SEVKSSSIMVESAD-VKELLIRRLEFVVLIKKS----RPNYLNDIIIDLV---LLKDDNTLNDEYTRELSILFILAVKKG 81 (595)
T ss_pred cccccceeEeccCC-CccceeeccccccccccC----Ccccccccccchh---eeccccCCCccccceeeecccCCcccc
Confidence 46888999999988 545567777777766644 4555677777777 889999999999999999988999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhCCC-----------Cccc---cccccCCCcCCCC------C---ccccccCC-----
Q 015324 88 DKGKKILATVTRLEKECERRRLAGAV-----------PVCL---DIDGCDKLTQSPS------S---DCFTQRTP----- 139 (409)
Q Consensus 88 D~G~Klr~~i~~~~~E~~RR~~~~~~-----------~~~~---d~~~~~~~~qs~s------s---d~~~~~~~----- 139 (409)
+.|.+-+..|..++.+..+|+..+.- .-|. |.. +++.....+ . +.|....+
T Consensus 82 ~~~~~~~~ki~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (595)
T KOG0779|consen 82 LTSLTEPLKIAVLEEQKPHAVVPKKIISVSELRNTNLTEGTFYSDYL-NRIKNIFESVRKFFNQVSYPKFMPNVTSFMPS 160 (595)
T ss_pred ccccccccccccccccCCccccccccccchhccccCCcccceecccc-cccccccchhcchhhhcccccccchhhcccCC
Confidence 99999999999999999888776540 0011 111 111111110 0 00111000
Q ss_pred ------------CcccccccceehhhhhccccccccchhhhhhHhhhhhccCCccccccCCccccccccccccCCCcccc
Q 015324 140 ------------SPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPF 207 (409)
Q Consensus 140 ------------ss~~~s~s~Fts~f~~~~e~~t~~~~~~af~kEls~l~~~~~~~~k~~g~~~~~~k~~~~~ss~~~~~ 207 (409)
..-...+..|-.+|... ..++-....++..++.......+.+-....... ..+.+..++ -|
T Consensus 161 ~~~~~q~~~~~~~~i~i~~~~~~~~fi~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~k~~~--~~ 233 (595)
T KOG0779|consen 161 PLEKCQLQRVFTWTINITRKLFKKLFIKI--FKNEPFHFKAVKFLLPSALTKSDVCDIADLEVI---FLNSRKDSH--SL 233 (595)
T ss_pred cccccccccccceeeeeeecchhhhcccC--cccCchhhhhhhcccchhccchhhhhhhccccc---chhcccchh--hh
Confidence 00012234444455442 122333334444444444322211111111000 000010000 11
Q ss_pred c------cCCCCCC-----CCCCCcCCCCCCCCCCCCCCCCCc-------------------ccCCccccccccCCCCcc
Q 015324 208 H------KGDKSFN-----SNGSQKDRASLTCPSHQSGENSSS-------------------CLPKKKESFEVLPSKNPR 257 (409)
Q Consensus 208 ~------~~~~~~~-----s~~~~k~~~~~~~~~~~~~~~~~~-------------------~~~k~~~~~~~~~~~~~r 257 (409)
. ...+.+. +.+..+....+.+ ..++...++ ...+..|.+...+..+..
T Consensus 234 ~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~s~~q~~s 311 (595)
T KOG0779|consen 234 VISSINSPNIKTFFSKEVKSRPTPASYFIFSS--FLPGLDPPAELHQNDDIDDIGIILNESPLDKPFEWLLANSPNQSES 311 (595)
T ss_pred hhcccccccchhhhccccccCCCccccccccc--ccCCCCccccccccchhhhhhhcccccccccchhhhhhcCcccchh
Confidence 1 1111111 1122222222221 111111111 145666666666655554
Q ss_pred cccc--CceEeccCCCCCccCCcccccCCcCccchhhhHHHHhhhccceeecCCC-CCCCceEEecchhhccCCCCCcCH
Q 015324 258 LRKE--QNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSR-VDPESVEICYTDINHLAPAAYLTS 334 (409)
Q Consensus 258 ~r~~--~~vv~ld~d~~~~e~~~~e~~~~~~~~~~~~~~e~~~~~~e~~i~yP~~-~~~~~v~It~sDl~~L~p~~wLND 334 (409)
++.. ..+..+.+.+.. ..+..+.+.++. ..|++. .. ..+.++..|+.||+++.+|||
T Consensus 312 ~~~~~~~~~~~~~~~~~~------------~~l~~~~~~el~-------~~~~p~~~~-~~~~v~~~Dl~cl~~~e~L~d 371 (595)
T KOG0779|consen 312 RSRDSLDNWFPVKEADKQ------------RTLIVKLAIELL-------EVRVPQICN-QSHQVNNNDLVCLEEGEFLND 371 (595)
T ss_pred cccccccccccccccccc------------cchHHHhhcccc-------ccCCccccc-cccceeccchhhccccchhhh
Confidence 4443 334333333222 233344333443 333332 22 367999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCC--CcccchhhhhhhccCCCCcccEEEEeccCC
Q 015324 335 PIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGD--KDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409 (409)
Q Consensus 335 ~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d--~~~~y~~VkRWtK~vDLF~kd~I~IPIned 409 (409)
.||+|||+|+...........+.+|+|+||||.+|.+...+++.+ ....+.++++|++++|+|.++||++|+|+.
T Consensus 372 ~i~dfyl~~i~~~~l~~~~~s~~~h~f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~k~yi~~P~~E~ 448 (595)
T KOG0779|consen 372 TIKDFYLEYIRQYLLSQKELSNDRHIFSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWTRHFDLFNKDYVFVPTHER 448 (595)
T ss_pred hhhhhhhHHHHHhhhcccccCcchhhhhhHHHhhhhhhhhhhhhhhhhccccCceeeeeeccccccceeEEecCchH
Confidence 999999999999987654467899999999999999998776666 567789999999999999999999999973
No 5
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification.; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....
Probab=99.35 E-value=8.9e-13 Score=120.78 Aligned_cols=79 Identities=33% Similarity=0.794 Sum_probs=58.0
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCC----------CcccchhhhhhhccC---CC
Q 015324 330 AYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGD----------KDSFFIKFRRWWKGV---NI 396 (409)
Q Consensus 330 ~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d----------~~~~y~~VkRWtK~v---DL 396 (409)
+||||.||||||+||..+.........++++|+||||++|......-+.+ ....+.++.+|++.. ++
T Consensus 1 ~wLnd~iId~y~~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (216)
T PF02902_consen 1 EWLNDSIIDFYLEYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNL 80 (216)
T ss_dssp --EEHHHHHHHHHHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTG
T ss_pred CcCCHHHHHHHHHHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccc
Confidence 59999999999999986654333457899999999999999432210000 034578999999987 99
Q ss_pred CcccEEEEeccC
Q 015324 397 FQKSYVLIPIHE 408 (409)
Q Consensus 397 F~kd~I~IPIne 408 (409)
+++++||||||.
T Consensus 81 ~~~~~i~iPin~ 92 (216)
T PF02902_consen 81 FDKDYIFIPINI 92 (216)
T ss_dssp GGSSEEEEEEEE
T ss_pred cccCEEEEEEec
Confidence 999999999996
No 6
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]
Probab=98.73 E-value=1.3e-08 Score=96.86 Aligned_cols=83 Identities=20% Similarity=0.413 Sum_probs=65.8
Q ss_pred CceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCCCcccchhhhhhhcc
Q 015324 314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKG 393 (409)
Q Consensus 314 ~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~ 393 (409)
..|.++.+|+..|.+..||||.||+||.+||......+ .+..|+++ +.++..+++.+ .-+.+......
T Consensus 15 ~dv~Lr~sDVdlL~~p~wlnD~~I~F~~e~l~~~~~~s---~~~~~ll~----P~~t~~l~~~~-----~~~e~~~~~~p 82 (223)
T KOG3246|consen 15 FDVSLRQSDVDLLQPPEWLNDRLIDFYYEYLEHRRSRS---EPDLHLLR----PSLTFFLRHAP-----NPEEIAMVLDP 82 (223)
T ss_pred eehhhhhhhhhhcCCCchhhhhHHHHHHHHHHHhhccc---CcchhccC----HHHHHHHHhCC-----CcHHHHHhcCh
Confidence 45899999999999999999999999999999987643 24467777 56666554433 22446666778
Q ss_pred CCCCcccEEEEeccC
Q 015324 394 VNIFQKSYVLIPIHE 408 (409)
Q Consensus 394 vDLF~kd~I~IPIne 408 (409)
.|+++|+|||+|||.
T Consensus 83 l~l~~k~~iflpiND 97 (223)
T KOG3246|consen 83 LDLNDKDFIFLPIND 97 (223)
T ss_pred hhcCCCceEEEEecC
Confidence 899999999999996
No 7
>PF15328 GCOM2: Putative GRINL1B complex locus protein 2
Probab=91.51 E-value=0.18 Score=48.78 Aligned_cols=37 Identities=35% Similarity=0.406 Sum_probs=30.9
Q ss_pred HHhhhhhh--ccccCCCcchHHHHHHHHHHHHHHHHHhh
Q 015324 73 ARMKDTYS--KVRHCLPDKGKKILATVTRLEKECERRRL 109 (409)
Q Consensus 73 ~R~~~~l~--~~~~rLpD~G~Klr~~i~~~~~E~~RR~~ 109 (409)
+|+..+|. ++-.+|||||+||+.++..|..++.+|.-
T Consensus 3 ~rq~klL~nkkfi~kLpDKGkKI~~~~~kL~~ai~~r~e 41 (223)
T PF15328_consen 3 RRQEKLLRNKKFICKLPDKGKKIQDFVEKLKAAIAEREE 41 (223)
T ss_pred hHHHHHhcchhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 56666663 47789999999999999999999999833
No 8
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=60.25 E-value=9.6 Score=43.14 Aligned_cols=31 Identities=35% Similarity=0.603 Sum_probs=27.7
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHhhhCC
Q 015324 82 VRHCLPDKGKKILATVTRLEKECERRRLAGA 112 (409)
Q Consensus 82 ~~~rLpD~G~Klr~~i~~~~~E~~RR~~~~~ 112 (409)
+...|||+|.++..+|+.|.+|+.||..-+.
T Consensus 210 ~~~~Lpd~g~~~~kr~~el~~~~~~~~~~~~ 240 (901)
T KOG4439|consen 210 AIDDLPDKGARLIKRLQELDRELERRMQFGE 240 (901)
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4568999999999999999999999987543
No 9
>PF15463 ECM11: Extracellular mutant protein 11
Probab=37.42 E-value=65 Score=28.89 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=40.8
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHhh
Q 015324 58 ELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRL 109 (409)
Q Consensus 58 ~~~~~~sD~eL~e~i~R~~~~l~~~~~rLpD~G~Klr~~i~~~~~E~~RR~~ 109 (409)
..|+.+|..+-.+.=..+-.....|-.+|-+.=.++|.++..++.|+.+|-.
T Consensus 64 ~~fs~ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~e 115 (139)
T PF15463_consen 64 EFFSNLSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAE 115 (139)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888887776655555554556678888889999999999999999944
No 10
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=29.10 E-value=1.2e+02 Score=23.85 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=38.3
Q ss_pred cCCCCchHHHHHHHHhhhhhhcc-----ccCC--CcchHHHHHHHHHHHHHHHHHhhh
Q 015324 60 DRQIPDQELGVRIARMKDTYSKV-----RHCL--PDKGKKILATVTRLEKECERRRLA 110 (409)
Q Consensus 60 ~~~~sD~eL~e~i~R~~~~l~~~-----~~rL--pD~G~Klr~~i~~~~~E~~RR~~~ 110 (409)
++.+|+.||++.|...+..|-.+ ...+ |-.-..+|+.|.+|.=.+-.|..+
T Consensus 6 lr~ls~~eL~~~l~~lkkeL~~lR~~~~~~~~~n~~~i~~~rk~IARi~Tvl~er~~~ 63 (66)
T PRK00306 6 LRELSVEELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLRERELG 63 (66)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999998887422 1233 334467888999998888887765
Done!