Query 015325
Match_columns 409
No_of_seqs 170 out of 1973
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 10:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 4.5E-61 1.6E-65 472.9 39.7 379 19-408 6-401 (536)
2 3rix_A Luciferase, luciferin 4 100.0 1.7E-59 6E-64 463.0 37.4 378 20-408 6-406 (550)
3 2d1s_A Luciferase, luciferin 4 100.0 7E-59 2.4E-63 458.1 39.8 378 17-408 7-408 (548)
4 3g7s_A Long-chain-fatty-acid-- 100.0 2.3E-59 7.8E-64 462.1 32.0 374 22-408 7-402 (549)
5 3fce_A D-alanine--poly(phospho 100.0 1.6E-58 5.3E-63 452.7 31.4 358 38-408 1-364 (512)
6 3tsy_A Fusion protein 4-coumar 100.0 1.1E-57 3.9E-62 478.0 38.2 385 15-408 41-448 (979)
7 3e7w_A D-alanine--poly(phospho 100.0 1.2E-57 4E-62 446.2 32.3 357 38-408 1-363 (511)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.6E-58 2.3E-62 450.5 30.6 358 38-408 25-397 (539)
9 3r44_A Fatty acyl COA syntheta 100.0 3.8E-58 1.3E-62 449.9 28.4 361 36-408 14-381 (517)
10 4fuq_A Malonyl COA synthetase; 100.0 1.6E-57 5.3E-62 444.1 32.4 356 42-408 4-366 (503)
11 3t5a_A Long-chain-fatty-acid-- 100.0 2.2E-58 7.7E-63 448.4 24.6 355 38-408 24-439 (480)
12 2v7b_A Benzoate-coenzyme A lig 100.0 1.4E-56 4.6E-61 440.6 36.7 356 38-408 23-397 (529)
13 3o83_A Peptide arylation enzym 100.0 1E-57 3.4E-62 449.7 28.6 360 37-408 29-406 (544)
14 3etc_A AMP-binding protein; ad 100.0 2E-56 6.8E-61 442.8 36.5 366 31-408 49-443 (580)
15 4dg8_A PA1221; ANL superfamily 100.0 5.1E-57 1.7E-61 449.6 31.2 349 37-408 26-379 (620)
16 3ivr_A Putative long-chain-fat 100.0 1.5E-56 5.2E-61 438.2 33.5 354 37-408 5-366 (509)
17 1v25_A Long-chain-fatty-acid-C 100.0 9E-57 3.1E-61 442.6 30.8 358 37-408 17-402 (541)
18 1pg4_A Acetyl-COA synthetase; 100.0 1.9E-56 6.5E-61 448.9 33.3 363 36-407 73-481 (652)
19 4gr5_A Non-ribosomal peptide s 100.0 1.2E-56 4E-61 444.5 31.2 351 37-408 74-428 (570)
20 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.8E-56 1.3E-60 434.7 34.0 353 38-408 2-370 (504)
21 3l8c_A D-alanine--poly(phospho 100.0 1.8E-56 6.2E-61 439.1 30.4 356 38-408 4-367 (521)
22 1amu_A GRSA, gramicidin synthe 100.0 6E-56 2.1E-60 438.1 33.8 347 38-408 39-391 (563)
23 3c5e_A Acyl-coenzyme A synthet 100.0 1.6E-55 5.5E-60 435.7 36.2 356 38-408 37-424 (570)
24 1ry2_A Acetyl-coenzyme A synth 100.0 1.2E-55 4.1E-60 443.3 33.8 370 29-407 73-490 (663)
25 3rg2_A Enterobactin synthase c 100.0 5E-55 1.7E-59 436.6 31.8 357 37-408 26-401 (617)
26 3kxw_A Saframycin MX1 syntheta 100.0 1.8E-55 6.1E-60 438.7 27.8 359 37-408 10-418 (590)
27 3ipl_A 2-succinylbenzoate--COA 100.0 9.8E-55 3.4E-59 424.7 27.9 348 38-408 1-367 (501)
28 3ite_A SIDN siderophore synthe 100.0 1.6E-54 5.6E-59 428.9 27.6 358 37-408 19-393 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 3.1E-54 1.1E-58 428.6 28.7 359 37-407 20-429 (576)
30 2vsq_A Surfactin synthetase su 100.0 1.5E-53 5E-58 457.6 31.8 352 38-408 464-822 (1304)
31 3nyq_A Malonyl-COA ligase; A/B 100.0 1.6E-54 5.5E-59 422.8 20.5 343 38-408 22-372 (505)
32 3hgu_A EHPF; phenazine, antibi 100.0 2.5E-33 8.5E-38 262.7 12.1 207 189-405 88-332 (369)
33 3qov_A Phenylacetate-coenzyme 100.0 2.1E-31 7.3E-36 255.2 16.1 204 189-398 82-292 (436)
34 4gs5_A Acyl-COA synthetase (AM 100.0 1.5E-31 5E-36 248.9 12.7 195 191-404 36-230 (358)
35 2y27_A Phenylacetate-coenzyme 100.0 1.8E-30 6.1E-35 248.8 16.9 203 189-397 87-296 (437)
36 2y4o_A Phenylacetate-coenzyme 100.0 2.7E-30 9.1E-35 248.1 16.1 204 189-398 89-299 (443)
37 4eql_A 4-substituted benzoates 96.4 0.014 4.9E-07 56.4 9.8 88 309-403 302-400 (581)
38 4epl_A Jasmonic acid-amido syn 94.9 0.059 2E-06 52.0 7.8 30 190-219 96-126 (581)
39 4b2g_A GH3-1 auxin conjugating 94.9 0.084 2.9E-06 51.3 8.7 30 190-219 97-127 (609)
40 2y27_A Phenylacetate-coenzyme 91.8 0.88 3E-05 42.5 10.1 87 68-156 108-196 (437)
41 2y4o_A Phenylacetate-coenzyme 91.4 1 3.5E-05 42.1 10.1 87 68-156 110-198 (443)
42 3qov_A Phenylacetate-coenzyme 91.1 1.1 3.8E-05 41.8 10.0 87 68-156 104-192 (436)
43 3hgu_A EHPF; phenazine, antibi 82.3 4.5 0.00016 36.5 8.4 87 68-157 109-220 (369)
44 3ni2_A 4-coumarate:COA ligase; 76.7 17 0.00059 34.6 10.9 98 189-294 34-134 (536)
45 3g7s_A Long-chain-fatty-acid-- 76.4 20 0.0007 34.2 11.4 104 190-296 32-139 (549)
46 3ivr_A Putative long-chain-fat 75.3 16 0.00054 34.5 10.2 96 189-294 18-116 (509)
47 2d1s_A Luciferase, luciferin 4 74.9 16 0.00054 35.0 10.1 98 57-157 192-298 (548)
48 3ipl_A 2-succinylbenzoate--COA 72.8 42 0.0014 31.4 12.5 97 56-157 162-266 (501)
49 3o83_A Peptide arylation enzym 72.1 39 0.0013 32.2 12.1 96 56-156 190-295 (544)
50 1v25_A Long-chain-fatty-acid-C 71.9 27 0.00092 33.3 10.9 100 190-295 31-133 (541)
51 1mdb_A 2,3-dihydroxybenzoate-A 70.8 38 0.0013 32.2 11.7 96 56-156 181-286 (539)
52 1t5h_X 4-chlorobenzoyl COA lig 70.3 31 0.0011 32.5 10.9 98 190-295 15-117 (504)
53 3r44_A Fatty acyl COA syntheta 70.0 31 0.0011 32.6 10.9 97 189-293 28-127 (517)
54 3t5a_A Long-chain-fatty-acid-- 67.6 21 0.00071 33.3 9.0 105 189-297 36-148 (480)
55 1amu_A GRSA, gramicidin synthe 65.9 37 0.0013 32.6 10.5 97 189-295 51-150 (563)
56 3rix_A Luciferase, luciferin 4 65.4 30 0.001 33.0 9.7 88 68-157 208-296 (550)
57 2v7b_A Benzoate-coenzyme A lig 64.9 24 0.00082 33.5 8.9 96 190-295 36-134 (529)
58 1ry2_A Acetyl-coenzyme A synth 64.7 36 0.0012 33.5 10.3 96 190-290 95-195 (663)
59 3fce_A D-alanine--poly(phospho 63.7 36 0.0012 32.1 9.9 97 56-156 143-249 (512)
60 3etc_A AMP-binding protein; ad 63.5 34 0.0012 33.0 9.8 96 189-289 68-166 (580)
61 3e7w_A D-alanine--poly(phospho 61.6 45 0.0016 31.4 10.1 97 56-156 142-248 (511)
62 3c5e_A Acyl-coenzyme A synthet 60.8 29 0.00098 33.4 8.7 102 190-296 56-161 (570)
63 3ezx_A MMCP 1, monomethylamine 60.1 41 0.0014 27.6 8.3 91 235-327 93-195 (215)
64 4gr5_A Non-ribosomal peptide s 59.7 50 0.0017 31.6 10.2 91 190-290 88-181 (570)
65 3tsy_A Fusion protein 4-coumar 59.5 30 0.001 35.8 9.1 96 189-292 73-171 (979)
66 3kxw_A Saframycin MX1 syntheta 58.0 43 0.0015 32.1 9.5 96 56-155 166-273 (590)
67 4fuq_A Malonyl COA synthetase; 57.9 37 0.0013 32.0 8.8 79 211-290 28-109 (503)
68 3rg2_A Enterobactin synthase c 57.3 1.2E+02 0.004 29.3 12.5 96 56-156 183-288 (617)
69 3tbh_A O-acetyl serine sulfhyd 57.1 30 0.001 30.7 7.5 92 57-151 35-127 (334)
70 1pg4_A Acetyl-COA synthetase; 52.3 36 0.0012 33.3 7.9 96 190-289 89-187 (652)
71 1zsy_A Mitochondrial 2-enoyl t 51.8 38 0.0013 30.2 7.4 81 69-149 139-223 (357)
72 3vc3_A Beta-cyanoalnine syntha 48.9 50 0.0017 29.4 7.5 93 57-151 50-142 (344)
73 4eez_A Alcohol dehydrogenase 1 46.6 42 0.0015 29.7 6.8 77 69-149 136-215 (348)
74 3l8c_A D-alanine--poly(phospho 46.6 53 0.0018 30.9 7.9 78 211-289 29-109 (521)
75 4aec_A Cysteine synthase, mito 45.6 54 0.0018 30.3 7.3 90 58-150 139-229 (430)
76 3gqw_A Fatty acid AMP ligase; 45.6 69 0.0023 30.5 8.6 84 210-294 48-141 (576)
77 3tqh_A Quinone oxidoreductase; 42.6 47 0.0016 29.0 6.4 77 68-149 124-203 (321)
78 3nyq_A Malonyl-COA ligase; A/B 40.3 1E+02 0.0035 28.9 8.8 76 211-290 48-124 (505)
79 3ju7_A Putative PLP-dependent 36.5 74 0.0025 28.5 6.8 61 84-148 68-135 (377)
80 3ite_A SIDN siderophore synthe 36.3 1.1E+02 0.0038 29.0 8.4 98 189-289 32-134 (562)
81 1z7w_A Cysteine synthase; tran 34.5 1.1E+02 0.0039 26.6 7.5 92 57-151 30-122 (322)
82 4gs5_A Acyl-COA synthetase (AM 34.3 87 0.003 27.8 6.8 82 68-156 55-137 (358)
83 3qwb_A Probable quinone oxidor 34.3 1.5E+02 0.0053 25.8 8.4 61 86-149 140-200 (334)
84 3s2e_A Zinc-containing alcohol 34.1 96 0.0033 27.2 7.1 77 68-149 138-217 (340)
85 2jtq_A Phage shock protein E; 33.2 77 0.0026 21.0 5.0 45 68-120 22-66 (85)
86 4dg8_A PA1221; ANL superfamily 33.2 1.2E+02 0.004 29.5 8.0 90 189-288 39-131 (620)
87 1gu7_A Enoyl-[acyl-carrier-pro 32.2 66 0.0022 28.6 5.7 81 69-149 138-223 (364)
88 2q3b_A Cysteine synthase A; py 32.0 1.4E+02 0.0048 25.9 7.7 90 58-151 32-122 (313)
89 3two_A Mannitol dehydrogenase; 31.4 1E+02 0.0034 27.2 6.7 75 68-147 148-225 (348)
90 4h1h_A LMO1638 protein; MCCF-l 31.3 1.3E+02 0.0044 26.5 7.3 60 91-150 8-86 (327)
91 1o69_A Aminotransferase; struc 30.9 1.8E+02 0.0062 25.9 8.5 57 90-149 67-129 (394)
92 4b7c_A Probable oxidoreductase 30.3 1.1E+02 0.0038 26.7 6.8 63 84-148 139-201 (336)
93 2pqm_A Cysteine synthase; OASS 30.2 1.4E+02 0.0048 26.4 7.4 91 57-151 42-133 (343)
94 1p5j_A L-serine dehydratase; l 29.7 1.6E+02 0.0054 26.4 7.7 88 58-152 62-149 (372)
95 1rjw_A ADH-HT, alcohol dehydro 29.2 1.7E+02 0.0058 25.6 7.8 74 69-147 137-213 (339)
96 4ej6_A Putative zinc-binding d 29.2 90 0.0031 27.9 6.0 60 84-148 173-233 (370)
97 3fpc_A NADP-dependent alcohol 29.1 74 0.0025 28.2 5.4 77 68-149 138-218 (352)
98 2egu_A Cysteine synthase; O-ac 29.1 1.4E+02 0.0048 25.8 7.2 91 57-151 29-120 (308)
99 3jv7_A ADH-A; dehydrogenase, n 28.8 77 0.0026 28.0 5.4 77 70-150 143-224 (345)
100 3gms_A Putative NADPH:quinone 28.2 1.4E+02 0.0047 26.2 7.0 78 68-149 115-196 (340)
101 1eg5_A Aminotransferase; PLP-d 28.0 1.5E+02 0.0052 25.9 7.5 57 92-149 86-146 (384)
102 4dup_A Quinone oxidoreductase; 27.9 1.5E+02 0.0052 26.1 7.3 79 68-149 138-219 (353)
103 3ijw_A Aminoglycoside N3-acety 27.5 45 0.0015 28.5 3.4 23 80-103 18-40 (268)
104 4e5s_A MCCFLIKE protein (BA_56 27.3 1.5E+02 0.0052 26.1 7.0 60 91-150 8-86 (331)
105 2v03_A Cysteine synthase B; py 26.9 2.1E+02 0.0072 24.6 7.9 89 58-150 26-115 (303)
106 3tla_A MCCF; serine protease, 26.9 1.5E+02 0.005 26.7 6.9 61 90-150 38-117 (371)
107 3ri6_A O-acetylhomoserine sulf 26.9 1.6E+02 0.0056 26.9 7.5 56 92-149 118-174 (430)
108 3sr3_A Microcin immunity prote 26.9 1.3E+02 0.0045 26.5 6.5 60 91-150 9-87 (336)
109 1ve1_A O-acetylserine sulfhydr 26.7 2.2E+02 0.0075 24.4 8.0 90 58-151 25-117 (304)
110 3dzz_A Putative pyridoxal 5'-p 26.6 1.7E+02 0.0059 25.7 7.6 55 92-149 106-167 (391)
111 2nyg_A YOKD protein; PFAM02522 26.2 49 0.0017 28.4 3.4 22 81-103 17-38 (273)
112 2l66_A SSO7C4, transcriptional 26.0 64 0.0022 19.5 3.1 20 86-105 20-39 (53)
113 3sma_A FRBF; N-acetyl transfer 25.8 50 0.0017 28.5 3.4 29 67-103 19-47 (286)
114 3pdi_B Nitrogenase MOFE cofact 25.5 1.2E+02 0.0041 28.2 6.2 74 94-168 312-401 (458)
115 2duw_A Putative COA-binding pr 25.3 1.1E+02 0.0038 23.0 5.1 9 56-64 13-21 (145)
116 3uog_A Alcohol dehydrogenase; 24.8 88 0.003 27.8 5.1 77 68-148 160-239 (363)
117 1uhe_A Aspartate 1-decarboxyla 24.3 51 0.0018 23.1 2.5 33 368-400 14-51 (97)
118 3a2b_A Serine palmitoyltransfe 24.2 3.5E+02 0.012 23.8 9.2 55 92-150 124-181 (398)
119 3goh_A Alcohol dehydrogenase, 24.1 1.1E+02 0.0037 26.5 5.4 74 68-147 114-190 (315)
120 1y80_A Predicted cobalamin bin 23.7 2.2E+02 0.0074 22.9 6.9 39 112-150 109-147 (210)
121 3dwg_A Cysteine synthase B; su 23.6 2.1E+02 0.0072 24.9 7.3 89 58-150 38-127 (325)
122 1piw_A Hypothetical zinc-type 23.5 1.4E+02 0.0047 26.5 6.1 76 69-149 152-230 (360)
123 3kki_A CAI-1 autoinducer synth 23.5 1.5E+02 0.0053 26.4 6.6 55 92-150 140-194 (409)
124 1yfb_A Transition state regula 23.4 64 0.0022 20.2 2.7 20 86-105 30-49 (59)
125 3hs3_A Ribose operon repressor 23.4 2.9E+02 0.0098 22.9 8.0 64 83-150 2-75 (277)
126 2e7j_A SEP-tRNA:Cys-tRNA synth 23.4 2.8E+02 0.0096 24.0 8.3 55 92-149 90-154 (371)
127 3jyn_A Quinone oxidoreductase; 23.2 2.1E+02 0.0072 24.8 7.2 79 68-149 111-192 (325)
128 1urh_A 3-mercaptopyruvate sulf 23.1 1.4E+02 0.0049 25.2 6.0 40 80-120 72-112 (280)
129 3krt_A Crotonyl COA reductase; 22.9 93 0.0032 28.8 5.0 79 68-149 197-280 (456)
130 2fsx_A RV0390, COG0607: rhodan 22.8 88 0.003 23.5 4.1 40 80-120 66-105 (148)
131 3ss7_X D-serine dehydratase; t 22.6 3.4E+02 0.012 24.9 8.7 96 57-153 101-217 (442)
132 3fbg_A Putative arginate lyase 22.5 1.7E+02 0.0058 25.7 6.5 80 68-150 115-203 (346)
133 1mdo_A ARNB aminotransferase; 22.5 1.8E+02 0.0062 25.7 6.8 59 86-149 71-134 (393)
134 2cf5_A Atccad5, CAD, cinnamyl 22.5 1.2E+02 0.0041 26.8 5.5 79 68-150 151-233 (357)
135 3uko_A Alcohol dehydrogenase c 22.5 1.6E+02 0.0056 26.2 6.5 77 69-149 165-245 (378)
136 2c0c_A Zinc binding alcohol de 21.9 2.2E+02 0.0075 25.2 7.2 61 85-148 154-214 (362)
137 3pdi_A Nitrogenase MOFE cofact 21.9 4.9E+02 0.017 24.2 9.8 56 94-150 331-387 (483)
138 4a2c_A Galactitol-1-phosphate 21.8 1.4E+02 0.0049 26.0 5.9 63 83-150 150-213 (346)
139 1vc3_B L-aspartate-alpha-decar 21.5 1.2E+02 0.004 21.2 3.9 33 368-400 15-53 (96)
140 1ofu_X SULA, hypothetical prot 21.2 2.1E+02 0.0072 20.8 5.6 53 83-136 47-101 (119)
141 3l6b_A Serine racemase; pyrido 21.0 1.5E+02 0.0051 26.3 5.7 91 58-152 41-132 (346)
142 2vsq_A Surfactin synthetase su 21.0 2.5E+02 0.0085 30.1 8.4 91 190-290 477-570 (1304)
143 1kol_A Formaldehyde dehydrogen 20.9 1.7E+02 0.0058 26.3 6.3 56 85-145 177-233 (398)
144 3ip1_A Alcohol dehydrogenase, 20.9 1.4E+02 0.0047 27.1 5.6 55 91-149 210-265 (404)
145 1mio_B Nitrogenase molybdenum 20.5 4.3E+02 0.015 24.3 9.0 30 94-124 311-340 (458)
146 1pl8_A Human sorbitol dehydrog 20.4 1.8E+02 0.0063 25.6 6.3 76 69-149 145-223 (356)
147 2e18_A NH(3)-dependent NAD(+) 20.4 2E+02 0.0069 24.0 6.3 70 77-150 8-83 (257)
148 3b8x_A WBDK, pyridoxamine 5-ph 20.3 3E+02 0.01 24.2 7.9 55 91-149 76-135 (390)
149 1y7l_A O-acetylserine sulfhydr 20.1 2.8E+02 0.0097 23.9 7.4 91 57-151 26-117 (316)
150 1e0c_A Rhodanese, sulfurtransf 20.1 1.6E+02 0.0054 24.8 5.6 40 80-120 67-107 (271)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.5e-61 Score=472.87 Aligned_cols=379 Identities=30% Similarity=0.462 Sum_probs=326.3
Q ss_pred CeeeecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEE
Q 015325 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (409)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V 98 (409)
..++++..+..+.|. .+++.++|.++++++ |+++|+++..+++++||+||.++++++|++|++ .|+++||+|
T Consensus 6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 77 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNH----SSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI 77 (536)
T ss_dssp CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGS----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred ceEEecCCCCCCCCC---CCcHHHHHHHHhhcC----CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 345666667666664 389999999999999 999999997667899999999999999999999 999999999
Q ss_pred EEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh----cCCeEEEeCCC-----
Q 015325 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDSP----- 169 (409)
Q Consensus 99 ~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~----- 169 (409)
+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.. ...+++.++..
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCL 157 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCE
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876554432 34556655432
Q ss_pred cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc----cCCCCCCCCEEEEeCchhh
Q 015325 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVSPAVMLFTMPYFH 245 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~d~~l~~~p~~~ 245 (409)
.+.++...... ........++++++|+|||||||.||||++||++++..+..... .+ ...+.|++++.+|++|
T Consensus 158 ~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h 234 (536)
T 3ni2_A 158 HFSELTQADEN--EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL-YFHSEDVILCVLPMFH 234 (536)
T ss_dssp ETHHHHTSCGG--GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSS-CCCTTCCEEECSCTTS
T ss_pred CHHHHhhcccc--ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccc-cCCCCCEEEEecChHH
Confidence 12333222111 22333457899999999999999999999999999888766544 23 5788999999999999
Q ss_pred HHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHH
Q 015325 246 IYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324 (409)
Q Consensus 246 ~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~ 324 (409)
.+++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......++++||.+++||+++++++.
T Consensus 235 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~ 314 (536)
T 3ni2_A 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELE 314 (536)
T ss_dssp HHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHH
Confidence 9999 668899999999999999999999999999999999999999999999877667788999999999999999999
Q ss_pred HHHHHhCCCCceecccCcccccceecccC---CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCcccc
Q 015325 325 MAFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401 (409)
Q Consensus 325 ~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~ 401 (409)
++|++.||++++++.||+||++..++... ........+++|+|+++++++|+|+++|+++++|+.|||+|+|++++.
T Consensus 315 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~ 394 (536)
T 3ni2_A 315 DTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMK 394 (536)
T ss_dssp HHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred HHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccch
Confidence 99999999999999999999987654421 223345678999999999999999889999999999999999999999
Q ss_pred ccCCCCC
Q 015325 402 GIFLPHF 408 (409)
Q Consensus 402 gY~~~~~ 408 (409)
||||+|+
T Consensus 395 GY~~~p~ 401 (536)
T 3ni2_A 395 GYLNDPE 401 (536)
T ss_dssp EETTCHH
T ss_pred hhcCChh
Confidence 9999863
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.7e-59 Score=463.01 Aligned_cols=378 Identities=26% Similarity=0.408 Sum_probs=313.4
Q ss_pred eeeecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEE---eCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCC
Q 015325 20 KTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKND 96 (409)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~ 96 (409)
.++.+..|..+.+. .|+.++|.++++++ |+++|++ +...++++||+||.++++++|++|++ .|+++||
T Consensus 6 ~~~~~~~~~~~~~~----~tl~~~l~~~a~~~----p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd 76 (550)
T 3rix_A 6 NIKKGPAPFYPLED----GTAGEQLHKAMKRY----ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNH 76 (550)
T ss_dssp GSEECCCCSSCCCC----SCHHHHHHHHHHHH----HTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTC
T ss_pred ceeeCCCCCCCccc----CCHHHHHHHHHHhC----CCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence 34555566666665 99999999999999 8998875 55456899999999999999999999 9999999
Q ss_pred EEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CCeEEEeCCC-
Q 015325 97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP- 169 (409)
Q Consensus 97 ~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~- 169 (409)
+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+... -..++.++..
T Consensus 77 ~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (550)
T 3rix_A 77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 156 (550)
T ss_dssp EEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSS
T ss_pred EEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCc
Confidence 999999999999999999999999999999999999999999999999999998766554421 1223333321
Q ss_pred ------cchhhhcccCCc----ccc-cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCE
Q 015325 170 ------EFDSMTMSWNSK----HEL-DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAV 236 (409)
Q Consensus 170 ------~~~~~~~~~~~~----~~~-~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~ 236 (409)
.+.++....... ... ......++++++|+|||||||.||||++||+++...+....... ....+.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~ 236 (550)
T 3rix_A 157 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236 (550)
T ss_dssp CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence 122222211100 011 11122357899999999999999999999999988877766552 15788999
Q ss_pred EEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecC
Q 015325 237 MLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA 316 (409)
Q Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G 316 (409)
+++.+|++|.++++.++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......++++||.+++||
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 316 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECS
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEec
Confidence 99999999999998889999999999999999999999999999999999999999999998776677889999999999
Q ss_pred CCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEec
Q 015325 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396 (409)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g 396 (409)
+++++++.++|++.|+...+++.||+||+++.++.. .......+++|+|+++++++|+|+++|+++++|+.|||+|+|
T Consensus 317 ~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~--~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g 394 (550)
T 3rix_A 317 APLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRG 394 (550)
T ss_dssp SCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC--CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEES
T ss_pred CCCCHHHHHHHHHHcCCCccccccCcCccccceecC--CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeC
Confidence 999999999999999544699999999998877653 334456789999999999999998899999999999999999
Q ss_pred CccccccCCCCC
Q 015325 397 PTIMKGIFLPHF 408 (409)
Q Consensus 397 ~~v~~gY~~~~~ 408 (409)
++++.||||+|.
T Consensus 395 ~~v~~GY~~~~~ 406 (550)
T 3rix_A 395 PMIMSGYVNNPE 406 (550)
T ss_dssp TTSCSEETTCHH
T ss_pred CCcchhhcCChh
Confidence 999999999863
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=7e-59 Score=458.12 Aligned_cols=378 Identities=26% Similarity=0.383 Sum_probs=316.2
Q ss_pred CCCeeeecCCCCCCCCCCCCCCCHHH-HHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCC
Q 015325 17 SATKTFHSLRPPIDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKN 95 (409)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g 95 (409)
+..|.+.+..+..+.|. .+|+.+ +|.++++++ +++|+++...++++||+||.++++++|+.|++ .|+++|
T Consensus 7 ~~~~~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~-----~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~g 77 (548)
T 2d1s_A 7 DENIVVGPKPFYPIEEG---SAGTQLRKYMERYAKL-----GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVD 77 (548)
T ss_dssp CTTSEECCCCSSCCCSS---CHHHHHHHHHHHHHHH-----TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTT
T ss_pred CcceEecCCCCCCCCCC---cCcHHHHHHHhhhccc-----CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCC
Confidence 34567777666555543 368888 888876543 78999985446899999999999999999999 999999
Q ss_pred CEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CCeEEEeCCC
Q 015325 96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP 169 (409)
Q Consensus 96 ~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~ 169 (409)
|+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+... ...++.++..
T Consensus 78 d~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (548)
T 2d1s_A 78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK 157 (548)
T ss_dssp CEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCS
T ss_pred CEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCc
Confidence 9999999999999999999999999999999999999999999999999999998766554321 2344444432
Q ss_pred -------cchhhhcccCCcccccccccC-----C-CCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhcc---CCCCCC
Q 015325 170 -------EFDSMTMSWNSKHELDRAKVC-----Q-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---SPKRVS 233 (409)
Q Consensus 170 -------~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~ 233 (409)
.+.++....... ........ + +++++|+|||||||.||||++||+++...+...... + +..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~~~ 235 (548)
T 2d1s_A 158 VDYRGYQCLDTFIKRNTPP-GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSP 235 (548)
T ss_dssp SCBTTBCBHHHHHHHTSCT-TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSC-CCCT
T ss_pred ccccccccHHHHHhcCccc-cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhcc-CCCc
Confidence 233333322110 01111222 3 899999999999999999999999999888777666 4 5788
Q ss_pred CCEEEEeCchhhHHhHHH-HHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCccee
Q 015325 234 PAVMLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312 (409)
Q Consensus 234 ~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v 312 (409)
+|++++..|++|.+++.. ++.++ .|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......++++||.+
T Consensus 236 ~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i 314 (548)
T 2d1s_A 236 GTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEI 314 (548)
T ss_dssp TCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEE
T ss_pred cceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEE
Confidence 999999999999999954 66677 9999999999999999999999999999999999999998866556678999999
Q ss_pred eecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceE
Q 015325 313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392 (409)
Q Consensus 313 ~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei 392 (409)
++||+++++++.++|++.|+++++++.||+||++..++. ........+++|+|+|+++++|+|+++|+++++|+.|||
T Consensus 315 ~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~--~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl 392 (548)
T 2d1s_A 315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII--TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392 (548)
T ss_dssp EECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE--CCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEE
T ss_pred EEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee--cCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEE
Confidence 999999999999999999988999999999999876665 223345678999999999999999889999999999999
Q ss_pred EEecCccccccCCCCC
Q 015325 393 SIRGPTIMKGIFLPHF 408 (409)
Q Consensus 393 ~v~g~~v~~gY~~~~~ 408 (409)
+|+|++++.||||+|.
T Consensus 393 ~v~g~~v~~GY~~~~~ 408 (548)
T 2d1s_A 393 CVKGPMLMKGYVNNPE 408 (548)
T ss_dssp EEESTTSCSEETTCHH
T ss_pred EECCHHHhhhhcCChH
Confidence 9999999999999863
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.3e-59 Score=462.09 Aligned_cols=374 Identities=24% Similarity=0.333 Sum_probs=316.6
Q ss_pred eecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCC------ceeeHHHHHHHHHHHHHHhHhccCCCCC
Q 015325 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG------LRVSFSEFTRRTNSLASYLQNVTRLSKN 95 (409)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~~gv~~g 95 (409)
+++..|....|. .|+.++|.++++++ ||++|+++.+.+ +++||+||.++++++|+.|++ .|+++|
T Consensus 7 ~~~~~p~~~~~~----~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~g 77 (549)
T 3g7s_A 7 YKIGFPSLYYPK----ISLADRIDAAAEKF----GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKG 77 (549)
T ss_dssp SCCCCCCCCCCC----CCTTHHHHHHHHHH----TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTT
T ss_pred eccCCCCCCcCC----CCHHHHHHHHHHhC----CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCC
Confidence 334455555655 89999999999999 999999987321 889999999999999999999 999999
Q ss_pred CEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh----cCCe-EEEeC--C
Q 015325 96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILID--S 168 (409)
Q Consensus 96 ~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~-~~~~~--~ 168 (409)
|+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.. .... ++..+ .
T Consensus 78 d~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (549)
T 3g7s_A 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEV 157 (549)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999877655542 2232 23332 1
Q ss_pred CcchhhhcccCCcccccccccCC-CCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHH
Q 015325 169 PEFDSMTMSWNSKHELDRAKVCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247 (409)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 247 (409)
..+.++...... ........+ +++++|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|.+
T Consensus 158 ~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~ 234 (549)
T 3g7s_A 158 NSLSEVMDSGSE--DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVGCMPMFHSA 234 (549)
T ss_dssp SCHHHHHHHSCS--CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEECCSCTTSHH
T ss_pred cCHHHHHhcCcc--ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEEEeCcHHHHH
Confidence 234444433221 112223333 8999999999999999999999999999988887777 688999999999999999
Q ss_pred hHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCC--CCCCCCcceeeecCCCCCHHHHH
Q 015325 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKDTIM 325 (409)
Q Consensus 248 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~--~~~l~~Lr~v~~~G~~~~~~~~~ 325 (409)
++..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+..... ..++++||.+++||+++++++.+
T Consensus 235 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~ 314 (549)
T 3g7s_A 235 EFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVE 314 (549)
T ss_dssp HHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHH
Confidence 9966899999999999999999999999999999999999999999998764322 35688999999999999999999
Q ss_pred HHHHh----C--CCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCcc
Q 015325 326 AFASK----F--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399 (409)
Q Consensus 326 ~~~~~----~--~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v 399 (409)
+|.+. + |++++++.||+||++..++... ........++|+|+++++++|+|+++|+++++|+.|||+|+||++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v 393 (549)
T 3g7s_A 315 KLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNP-PLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNI 393 (549)
T ss_dssp HHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECC-GGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTS
T ss_pred HHHHHHHhhcCCccccccceEeccccchhhhcCC-ccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcch
Confidence 99988 5 2389999999999988766532 222345688999999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 015325 400 MKGIFLPHF 408 (409)
Q Consensus 400 ~~gY~~~~~ 408 (409)
+.||||+|.
T Consensus 394 ~~GY~~~~~ 402 (549)
T 3g7s_A 394 FKGYWKREK 402 (549)
T ss_dssp CSEETTCTT
T ss_pred hhhhCCChh
Confidence 999999875
No 5
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.6e-58 Score=452.67 Aligned_cols=358 Identities=17% Similarity=0.236 Sum_probs=305.0
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~ 117 (409)
||+.+.|.+.++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~ 73 (512)
T 3fce_A 1 MKLLEQIEKWAAET----PDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVK 73 (512)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999998 7899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (409)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (409)
+|++++|+++.++.+++.++++++++++++++...... ....... ....+...................++++++|
T Consensus 74 ~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 149 (512)
T 3fce_A 74 AGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT--DLPVRIV--SEDNLKDIFFTHKGNTPNPEHAVKGDENFYI 149 (512)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--CCSSEEE--ETHHHHHHHHHTTTCCCCGGGSCCTTSEEEE
T ss_pred hCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc--cccccee--chhhhhhhcccccccCCCccccCCCCCeEEE
Confidence 99999999999999999999999999999998543211 1112222 1112222221111111222334567999999
Q ss_pred EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHHH
Q 015325 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (409)
Q Consensus 198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~ 274 (409)
+|||||||.||||++||+++...+......+ ++.++|++++..|++|.+++..++.++..|+++++.+. +++..++
T Consensus 150 ~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 228 (512)
T 3fce_A 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLF 228 (512)
T ss_dssp EEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHH
Confidence 9999999999999999999999998888888 78999999999999999999889999999999999976 6899999
Q ss_pred HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (409)
Q Consensus 275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (409)
+.++++++|++.++|+++..++.........+++||.+++||+++++++.++|.+.|+++++++.||+||+++.++....
T Consensus 229 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 308 (512)
T 3fce_A 229 ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV 308 (512)
T ss_dssp HHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence 99999999999999999999998877777778999999999999999999999999999999999999999876654221
Q ss_pred CC---CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 355 ~~---~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
.. ......++|+|+++++++|+| ++|+++++|+.|||+|+||+++.|||++|.
T Consensus 309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~ 364 (512)
T 3fce_A 309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPE 364 (512)
T ss_dssp CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHH
T ss_pred ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCch
Confidence 11 123567899999999999999 899999999999999999999999999863
No 6
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.1e-57 Score=478.05 Aligned_cols=385 Identities=33% Similarity=0.483 Sum_probs=325.0
Q ss_pred CCCCCeeeecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCC
Q 015325 15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSK 94 (409)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~ 94 (409)
.......|++..|....|. .+|+.++|.++++++ ||++|+++..+++++||+||.++++++|+.|++ .|+++
T Consensus 41 ~~~~~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~ 112 (979)
T 3tsy_A 41 NNNSDVIFRSKLPDIYIPN---HLSLHDYIFQNISEF----ATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQ 112 (979)
T ss_dssp ----CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGT----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCT
T ss_pred CCCCCceeecCCCCCCCCC---CCCHHHHHHHHHHhC----CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCC
Confidence 3444556777777666653 489999999999999 999999997667899999999999999999999 99999
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHh----hcCCeEEEeCCC-
Q 015325 95 NDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSP- 169 (409)
Q Consensus 95 g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~- 169 (409)
||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+. .....++.++..
T Consensus 113 gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (979)
T 3tsy_A 113 NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNE 192 (979)
T ss_dssp TCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCT
T ss_pred cCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcc
Confidence 999999999999999999999999999999999999999999999999999999986554433 224445554432
Q ss_pred ---------cchhhhcccCCc-ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc----cCCCCCCCC
Q 015325 170 ---------EFDSMTMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVSPA 235 (409)
Q Consensus 170 ---------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~d 235 (409)
.+.++....... .........++++++|+|||||||.||||+++|+++...+..... .+ ...+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~~~d 271 (979)
T 3tsy_A 193 SVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDD 271 (979)
T ss_dssp TSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSS-CCCSSC
T ss_pred cccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccc-cCCCCC
Confidence 122222221110 012223457899999999999999999999999999988776544 23 578899
Q ss_pred EEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeee
Q 015325 236 VMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC 314 (409)
Q Consensus 236 ~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~ 314 (409)
++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......++++||.+++
T Consensus 272 ~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~ 351 (979)
T 3tsy_A 272 VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKS 351 (979)
T ss_dssp EEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEE
T ss_pred EEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEE
Confidence 99999999999999 66789999999999999999999999999999999999999999999987766778899999999
Q ss_pred cCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC---CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcce
Q 015325 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391 (409)
Q Consensus 315 ~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Ge 391 (409)
||+++++++.++|++.||++++++.||+||++..++... ........+++|+|+++++++|+|+++|+++++|+.||
T Consensus 352 gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GE 431 (979)
T 3tsy_A 352 GAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431 (979)
T ss_dssp SSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEE
T ss_pred cCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccE
Confidence 999999999999999999999999999999987655421 22334466889999999999999988999999999999
Q ss_pred EEEecCccccccCCCCC
Q 015325 392 LSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 392 i~v~g~~v~~gY~~~~~ 408 (409)
|+|+|++++.||||+|.
T Consensus 432 l~i~g~~v~~GY~~~p~ 448 (979)
T 3tsy_A 432 ICIRGHQIMKGYLNNPA 448 (979)
T ss_dssp EEEESTTSCSEETTCHH
T ss_pred EEEECCCccccccCChh
Confidence 99999999999999863
No 7
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.2e-57 Score=446.18 Aligned_cols=357 Identities=17% Similarity=0.210 Sum_probs=306.4
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~ 117 (409)
||+.+.|.++++++ |+++|+++. ++++||+||.++++++|++|++..|+++|++|+++++|+++++++++||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~ 74 (511)
T 3e7w_A 1 MKLLHAIQTHAETY----PQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK 74 (511)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 68999999999999 999999998 899999999999999999998734888999999999999999999999999
Q ss_pred hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (409)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (409)
+|++++|+++.++.+++.+++++++++++|++..............+ .+.++....... ........++++++|
T Consensus 75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~a~i 148 (511)
T 3e7w_A 75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV-----SAEELLENEGGS-VSQDQWVKEHETFYI 148 (511)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEE-----EHHHHHTSCSCC-CCGGGSCCTTSEEEE
T ss_pred hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccccee-----cHhhhhccccCC-ccccccCCCCCeEEE
Confidence 99999999999999999999999999999997543221111111111 122222221111 122234567899999
Q ss_pred EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHHH
Q 015325 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (409)
Q Consensus 198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~ 274 (409)
+|||||||.||||++||+++...+......+ +...+|++++..|++|.+++..++.++..|+++++.+. +++..++
T Consensus 149 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 227 (511)
T 3e7w_A 149 IYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLF 227 (511)
T ss_dssp EEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence 9999999999999999999999998888888 68999999999999999999889999999999999875 6899999
Q ss_pred HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (409)
Q Consensus 275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (409)
+.++++++|++.++|+++..++.........++++|.+++||+++++++.++|.+.||++++++.||+||+++.++....
T Consensus 228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 307 (511)
T 3e7w_A 228 EELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307 (511)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEE
T ss_pred HHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEec
Confidence 99999999999999999999998877667778999999999999999999999999999999999999999876554221
Q ss_pred CC---CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 355 ~~---~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
.. ......++|+|+++++++|+| ++|+++++|+.|||+|+||+++.|||++|.
T Consensus 308 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~ 363 (511)
T 3e7w_A 308 TNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPE 363 (511)
T ss_dssp CHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHH
T ss_pred cccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcc
Confidence 11 223456799999999999999 789999999999999999999999999863
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.6e-58 Score=450.46 Aligned_cols=358 Identities=22% Similarity=0.280 Sum_probs=302.0
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~ 117 (409)
.++.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus 25 ~tl~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC----CCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 79999999999999 999999997 7899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--------HHHh-hc-CCe-EEEeCC-CcchhhhcccCCccccc
Q 015325 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA-KL-KHR-TILIDS-PEFDSMTMSWNSKHELD 185 (409)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 185 (409)
+|++++|+++.++.+++.+++++++++++|+++... ..+. .. ..+ ++..+. ..+.++...... ...
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 175 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--PVK 175 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCC--CCC
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcccc--ccc
Confidence 999999999999999999999999999999987531 1111 11 122 222222 223333222111 111
Q ss_pred ccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHH--HHHHHHHhCCeEE
Q 015325 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMETAV 263 (409)
Q Consensus 186 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~--~~~~~l~~G~~~v 263 (409)
.....++++++|+|||||||.||||++||+++...+......+ ++.++|++++.+|++|.+++. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 2345678999999999999999999999999998888877777 688999999999999999984 6899999999999
Q ss_pred EecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcc
Q 015325 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (409)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t 343 (409)
+.+.+++..+++.|+++++|++.++|+++..+++.......++++||.+++||+++++++.++|++.+ ++++++.||+|
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 333 (539)
T 1mdb_A 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA 333 (539)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCC
Confidence 99999999999999999999999999999999876544456789999999999999999999999999 89999999999
Q ss_pred cccceecccCCCCCCCCCCccccccCCc-eEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 344 ESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~s~G~p~~~~-~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
|++..++. .........+++|+|+++. +++|+| ++|+++++|+.|||+|+||+++.||||+|+
T Consensus 334 E~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~ 397 (539)
T 1mdb_A 334 EGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEE 397 (539)
T ss_dssp TSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHH
T ss_pred CCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChh
Confidence 96543322 1111122346899999765 899999 899999999999999999999999999863
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.8e-58 Score=449.90 Aligned_cols=361 Identities=23% Similarity=0.280 Sum_probs=306.3
Q ss_pred CCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325 36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (409)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~ 115 (409)
...|+.++|.++++++ |+++|+++.+...++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||
T Consensus 14 ~~~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~ 88 (517)
T 3r44_A 14 KMKNIGWMLRQRATVS----PRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGA 88 (517)
T ss_dssp GGGCHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhC----CCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHH
Confidence 3489999999999999 999999998334499999999999999999999 99999999999999999999999999
Q ss_pred HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----C--CeEE-EeCCCcchhhhcccCCcccccccc
Q 015325 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K--HRTI-LIDSPEFDSMTMSWNSKHELDRAK 188 (409)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 188 (409)
+++|++++|+++.++.+++.+++++++++++|++......+... . ..++ ......+.+....... ......
T Consensus 89 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 166 (517)
T 3r44_A 89 AKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA--DEPAVE 166 (517)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCC--CCCCCC
T ss_pred HHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCc--CCCCCC
Confidence 99999999999999999999999999999999998766554421 0 0111 1111122222222111 222334
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCC
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 268 (409)
..++++++|+|||||||.||||++||+++...+......+ ++...|++++.+|++|.+++...+.++..|+++++.+.+
T Consensus 167 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~ 245 (517)
T 3r44_A 167 CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQF 245 (517)
T ss_dssp CCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCC
Confidence 5679999999999999999999999999999998888888 789999999999999999996655666699999999999
Q ss_pred CHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccce
Q 015325 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (409)
Q Consensus 269 ~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 348 (409)
++..+++.++++++|++.++|+++..|.+.+.....++++||.+++||+++++++.++|.+. ++++++.||+||+++.
T Consensus 246 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~ 323 (517)
T 3r44_A 246 DATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGG 323 (517)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccc
Confidence 99999999999999999999999999998765555678899999999999999999999987 8999999999999886
Q ss_pred ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 349 ~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
++...........+++|+|+++++++|+| ++|++++.| .|||+|+|++++.|||++|.
T Consensus 324 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~ 381 (517)
T 3r44_A 324 GTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPE 381 (517)
T ss_dssp EEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHH
T ss_pred eeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChh
Confidence 66544434456678999999999999999 899999999 89999999999999999863
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.6e-57 Score=444.13 Aligned_cols=356 Identities=25% Similarity=0.362 Sum_probs=299.0
Q ss_pred HHHhhccCCCCCCCCCCcEEEeC-CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC
Q 015325 42 DYVSSLRATLPWRDDDTVALINS-VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (409)
Q Consensus 42 ~~l~~~~~~~~~~~p~~~a~~~~-~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~ 120 (409)
++|...++++ |+++|+... .+++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus 4 ~l~~~~a~~~----p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKL----DDPHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCC----SCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhC----CCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 4566667777 888877631 236899999999999999999999 9999999999999999999999999999999
Q ss_pred eEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHh----hcCCeEEEeCCCcchhhhcc-cCCcccccccccCCCCEE
Q 015325 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMS-WNSKHELDRAKVCQSDVA 195 (409)
Q Consensus 121 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a 195 (409)
+++|+++.++.+++.+++++++++++|++.+....+. .....+..++......+... .............+++++
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 158 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA 158 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEE
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeE
Confidence 9999999999999999999999999999876543322 22334444432221111110 000112223345679999
Q ss_pred EEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHH
Q 015325 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMML 274 (409)
Q Consensus 196 ~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~ 274 (409)
+|+|||||||.||||++||+++...+......+ ++.++|++++.+|++|.+++ ...+.++..|+++++.+.+++..++
T Consensus 159 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 237 (503)
T 4fuq_A 159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL 237 (503)
T ss_dssp EEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHH
Confidence 999999999999999999999999998888888 78999999999999999997 5678899999999999999999999
Q ss_pred HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (409)
Q Consensus 275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (409)
+.++ ++|++.++|+++..+++........+++||.+++||+++++++.++|.+.+ ++++++.||+||++..++. .
T Consensus 238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~ 312 (503)
T 4fuq_A 238 DLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--P 312 (503)
T ss_dssp HHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--C
T ss_pred HHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--C
Confidence 9998 899999999999999998776677789999999999999999999999998 8999999999999765433 3
Q ss_pred CCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 355 ~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
.......+++|+|+++++++|+|+++|+++++|+.|||+|+|++++.||||+|.
T Consensus 313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~ 366 (503)
T 4fuq_A 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPE 366 (503)
T ss_dssp SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHH
T ss_pred CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChh
Confidence 344556789999999999999999999999999999999999999999999863
No 11
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.2e-58 Score=448.45 Aligned_cols=355 Identities=19% Similarity=0.221 Sum_probs=291.1
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCC-----CC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSV-----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~ 110 (409)
.++.++|.++++++ ||++|+++.+ ++ +++||+||.++++++|+.|++ .|+ +||+|+|+++|++++++
T Consensus 24 ~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 24 RSLPAALRACARLQ----PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHH
Confidence 89999999999999 9999999752 12 789999999999999999999 896 99999999999999999
Q ss_pred HHHHHHHhCCeEccCCC---CCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCC--------eEEEeCCCcchhhhcccC
Q 015325 111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH--------RTILIDSPEFDSMTMSWN 179 (409)
Q Consensus 111 ~~~A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 179 (409)
++|||+++|++++|+++ .++.+++.+++++++++++|++.+....+.+... .++..+. .....
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~- 171 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL-----LDLDA- 171 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-----SCTTC-
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-----ccccc-
Confidence 99999999999999999 7789999999999999999999987766654321 1222211 10110
Q ss_pred CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCC------CCEEEEeCchhhHHhH-HHH
Q 015325 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------PAVMLFTMPYFHIYGL-FFC 252 (409)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~------~d~~l~~~p~~~~~g~-~~~ 252 (409)
..........++++++|+|||||||.||||++||+++...+......+ .... .|++++.+|++|.+++ ..+
T Consensus 172 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 249 (480)
T 3t5a_A 172 -PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVIGI 249 (480)
T ss_dssp -C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTTTTCCCTTEEEEECCCTTSTTHHHHHT
T ss_pred -ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccccccCCCCCCeEEEeCCCcCccHHHHHH
Confidence 012223345678999999999999999999999999998887776666 4555 8999999999999997 678
Q ss_pred HHHHHhCCeEEEecCC----CHHHHHHHHHHhcceeEeechHHHHHHHhC----CCCCCCCCCCcceeeecCCCCCHHHH
Q 015325 253 FRAAALMETAVVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKG----GSTDGYDLSSLETVACGAAPLGKDTI 324 (409)
Q Consensus 253 ~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~----~~~~~~~l~~Lr~v~~~G~~~~~~~~ 324 (409)
+.++..|+++++.+.. ++..+++.++++++| +.++|+++..++.. ......++++||.+++||+++++++.
T Consensus 250 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 250 CAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHH
Confidence 9999999999998753 899999999999999 88999988887763 23345678999999999999999999
Q ss_pred HHHHHhC-----CCCceecccCcccccceecccCCCCC-----------------------CCCCCccccccCCceEEEe
Q 015325 325 MAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIV 376 (409)
Q Consensus 325 ~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~s~G~p~~~~~v~i~ 376 (409)
++|++.| +++.+++.||+||++..++....... .....++|+|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 9999998 45689999999999887665322111 123458999999 999999
Q ss_pred cCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 377 DPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 377 d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
|+++|++++.|+.|||+|+||+++.||||+|+
T Consensus 408 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe 439 (480)
T 3t5a_A 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPD 439 (480)
T ss_dssp ETTTTEECCTTBCEEEEEESTTSCCCBTTBHH
T ss_pred cCCCCcCCCCCCEEEEEEeCCccccccccCcc
Confidence 97779999999999999999999999999863
No 12
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.4e-56 Score=440.64 Aligned_cols=356 Identities=20% Similarity=0.272 Sum_probs=293.2
Q ss_pred CC-HHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325 38 IS-AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (409)
Q Consensus 38 ~~-~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~ 116 (409)
+| +.++|.+.++ + |+++|++++ ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+
T Consensus 23 ~~~~~~~l~~~~~-~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 94 (529)
T 2v7b_A 23 FNFAAYLFRLNET-R----AGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGAL 94 (529)
T ss_dssp CCHHHHHHHHTGG-G----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-c----CCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 66 6777777777 8 999999987 6899999999999999999999 999999999999999999999999999
Q ss_pred HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----C--CeEEEeCCC--------cchhhhcccCCc
Q 015325 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K--HRTILIDSP--------EFDSMTMSWNSK 181 (409)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~--~~~~~~~~~--------~~~~~~~~~~~~ 181 (409)
++|++++|+++.++.+++.+++++++++++|++......+... . ..++..+.. .++++......
T Consensus 95 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (529)
T 2v7b_A 95 YAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP- 173 (529)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC-
T ss_pred HcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC-
Confidence 9999999999999999999999999999999998765544321 1 233333321 23333321111
Q ss_pred ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHH-HHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhC
Q 015325 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL-TAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALM 259 (409)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G 259 (409)
........++++++|+|||||||.||||++||+++ ..........+ ++.+.|++++..|++|.+++ ..++.++..|
T Consensus 174 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 174 -AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp -CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred -cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 11223456789999999999999999999999999 55555544555 68899999999999999998 4578899999
Q ss_pred CeEEEe-cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325 260 ETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (409)
Q Consensus 260 ~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 338 (409)
+++++. +.+++..+++.++++++|++.++|+++..+++..........+||.+++||+++++++.++|++.+ ++++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~ 330 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD 330 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence 999988 568999999999999999999999999999987544332124899999999999999999999998 899999
Q ss_pred ccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
.||+||+++.++.. .......+++|+|+++++++|+| ++|+++++|+.|||+|+|++++.|||+++.
T Consensus 331 ~YG~TE~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~ 397 (529)
T 2v7b_A 331 GIGSTEMLHIFLSN--RAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNRE 397 (529)
T ss_dssp EEECTTTSSEEEEC--CTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHH
T ss_pred eEchhhcCceeecc--ccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChH
Confidence 99999997655442 22235678999999999999999 899999999999999999999999999863
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1e-57 Score=449.67 Aligned_cols=360 Identities=21% Similarity=0.249 Sum_probs=304.3
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~ 116 (409)
+.|+.++|.++++++ |+++|++++ ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+
T Consensus 29 ~~tl~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 101 (544)
T 3o83_A 29 DQPLTRILTVGVQSH----PHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALL 101 (544)
T ss_dssp CCCTTHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 389999999999999 999999998 8899999999999999999999 999999999999999999999999999
Q ss_pred HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--------HHHhhc--CCe-EEEeCCC----cchhhhcccCCc
Q 015325 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAKL--KHR-TILIDSP----EFDSMTMSWNSK 181 (409)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~~--~~~-~~~~~~~----~~~~~~~~~~~~ 181 (409)
++|++++|+++.++.+++.+++++++++++|++.... ..+... ... ++..+.. .+.++.......
T Consensus 102 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (544)
T 3o83_A 102 KAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAET 181 (544)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSS
T ss_pred HhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccc
Confidence 9999999999999999999999999999999987542 122111 122 2233221 112222211111
Q ss_pred ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHH--HHHHHHHhC
Q 015325 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALM 259 (409)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~--~~~~~l~~G 259 (409)
........++++++|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|.+++. .++.++..|
T Consensus 182 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G 259 (544)
T 3o83_A 182 -FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCALPAPHNFMLSSPGALGVLHAG 259 (544)
T ss_dssp -CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred -ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CCCCCCeEEEecCcceEeecchHHHHHHHHcC
Confidence 1112345678999999999999999999999999999998888888 789999999999999999884 589999999
Q ss_pred CeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (409)
Q Consensus 260 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~ 339 (409)
+++++.+.+++..+++.|+++++|++.++|+++..+++.......++++||.+++||+++++++.++|++.+ ++++++.
T Consensus 260 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~ 338 (544)
T 3o83_A 260 GCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQV 338 (544)
T ss_dssp CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEee
Confidence 999999999999999999999999999999999999987655555688999999999999999999999999 9999999
Q ss_pred cCcccccceecccCCCCCCCCCCcccccc-CCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~s~G~p~-~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
||+||++..++. ..........++|+|+ ++++++|+| ++|+++++|+.|||+|+||+++.|||++|.
T Consensus 339 YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~ 406 (544)
T 3o83_A 339 FGMAEGLVNYTR-LDDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPE 406 (544)
T ss_dssp EECTTSCEEECC-TTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHH
T ss_pred eccccccceeec-CCCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChh
Confidence 999998754433 1222223346899996 899999999 999999999999999999999999999863
No 14
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2e-56 Score=442.84 Aligned_cols=366 Identities=16% Similarity=0.183 Sum_probs=302.9
Q ss_pred CCCCCCCCCHH-HHHhhccCCCCCCCCCCcEEEeC---CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC
Q 015325 31 LPPEDAPISAV-DYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI 106 (409)
Q Consensus 31 ~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~a~~~~---~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~ 106 (409)
++.++ .+|+. +.|...++++ ||++|+++. ..++++||+||.++++++|++|++ .|+++||+|+++++|++
T Consensus 49 ~~~~~-~~n~~~~~l~~~a~~~----pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~ 122 (580)
T 3etc_A 49 ILVPE-NFNFAYDVVDVYARDS----PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRY 122 (580)
T ss_dssp BCCCS-SCCHHHHTHHHHHHHC----TTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCT
T ss_pred CCCcc-cchHHHHHHHHHHhhC----CCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCH
Confidence 34433 37887 8888888888 999999962 124689999999999999999999 99999999999999999
Q ss_pred chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--HHHhh-------cCCeEEEeCCC------cc
Q 015325 107 EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--HKLAK-------LKHRTILIDSP------EF 171 (409)
Q Consensus 107 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~-------~~~~~~~~~~~------~~ 171 (409)
+++++++||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.+ ....++.++.. .+
T Consensus 123 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (580)
T 3etc_A 123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDF 202 (580)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEH
T ss_pred HHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccH
Confidence 99999999999999999999999999999999999999999987643 22221 11334444422 12
Q ss_pred hhhhcccCCccccc--ccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH
Q 015325 172 DSMTMSWNSKHELD--RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249 (409)
Q Consensus 172 ~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~ 249 (409)
.+............ .....++|+++|+|||||||.||+|.++|++++..+....... ...+.+++++..|++|..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 281 (580)
T 3etc_A 203 RKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVEDDGLHYTVADSGWGKCV 281 (580)
T ss_dssp HHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCCTTCEEEECCCTTSTHHH
T ss_pred HHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCCCCceEEEeCChHHHHHH
Confidence 22222221110111 1245679999999999999999999999999888777766666 68899999999999998887
Q ss_pred H-HHHHHHHhCCeEEEe--cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHH
Q 015325 250 F-FCFRAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMA 326 (409)
Q Consensus 250 ~-~~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~ 326 (409)
+ .++.++..|+++++. ..+++..+++.|+++++|+++++|+++..|.+. .....++++||.+++||+++++++.++
T Consensus 282 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~ 360 (580)
T 3etc_A 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNR 360 (580)
T ss_dssp HHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHH
Confidence 4 578899999999988 468999999999999999999999999999986 344567899999999999999999999
Q ss_pred HHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEec-----Ccccc
Q 015325 327 FASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG-----PTIMK 401 (409)
Q Consensus 327 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g-----~~v~~ 401 (409)
|.+.+ ++++++.||+||++..++. ........+++|+|+|+++++|+| ++|+++++|+.|||+|+| ++++.
T Consensus 361 ~~~~~-g~~i~~~YG~TE~~~~~~~--~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~ 436 (580)
T 3etc_A 361 FLEFT-GIKLMEGFGQTETVVTIAT--FPWMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFV 436 (580)
T ss_dssp HHHHH-SCCCEEEECCTTSSCCEEC--CTTSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCC
T ss_pred HHHHh-CCeEecccccccccceeec--CCCCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeec
Confidence 99988 8999999999999876655 233456778999999999999999 789999999999999997 78999
Q ss_pred ccCCCCC
Q 015325 402 GIFLPHF 408 (409)
Q Consensus 402 gY~~~~~ 408 (409)
|||++|+
T Consensus 437 gY~~~p~ 443 (580)
T 3etc_A 437 HYGKDPE 443 (580)
T ss_dssp EETTCHH
T ss_pred cccCCHh
Confidence 9999874
No 15
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.1e-57 Score=449.56 Aligned_cols=349 Identities=17% Similarity=0.133 Sum_probs=295.6
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~ 116 (409)
..++.+.|.++++++ ||++|+++. ++++||+||.++++++|++|++ .|+++|++|+++++|+++++++++||+
T Consensus 26 ~~tl~~~~~~~a~~~----Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 26 HPTVVARFSEMAALH----PHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 478999999999999 999999998 7899999999999999999999 999999999999999999999999999
Q ss_pred HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (409)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (409)
++|++++|+++.++.+++.++++++++++++++........ ........ ... ............++++++
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~~-----~~~---~~~~~~~~~~~~~~d~a~ 168 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--GLPCVPVR-----HLP---AAPASVARPCFAADQIAY 168 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--TSCEEEGG-----GCC---CCCCCSSCCCCCTTSEEE
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--CCceeeec-----cCC---cCCccccCCCCCCCCeEE
Confidence 99999999999999999999999999999997654322111 11111111 000 000111223346799999
Q ss_pred EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec--CCCHHHHH
Q 015325 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (409)
Q Consensus 197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~ 274 (409)
|+|||||||.||||+++|+++.+.+.. ...+ .+.+.+++++..|++|..+++.++.++..|+++++.+ .+++..++
T Consensus 169 iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 246 (620)
T 4dg8_A 169 INFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLR 246 (620)
T ss_dssp EEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHH
T ss_pred EEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHH
Confidence 999999999999999999999876654 3444 6889999999999999999988999999999999974 57999999
Q ss_pred HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (409)
Q Consensus 275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (409)
+.|+++++|++.++|+++..+.+.. ...+++||.+++|||++++++.+++.+.+++++++|.||+||++..++....
T Consensus 247 ~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 323 (620)
T 4dg8_A 247 QLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVV 323 (620)
T ss_dssp HHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEec
Confidence 9999999999999999999998743 2357899999999999999999999999889999999999999876554222
Q ss_pred --CCCCCCCCccccccCCceEEEecCCCCCC-CCCCCcceEEEecCccccccCCCCC
Q 015325 355 --PDECRRWGSTGRLSAGLEAKIVDPETGDS-LPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 355 --~~~~~~~~s~G~p~~~~~v~i~d~~~g~~-~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
........++|+|+++++++|+| +++++ ++.|+.|||+|+|+++++||||+|.
T Consensus 324 ~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~ 379 (620)
T 4dg8_A 324 TDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAA 379 (620)
T ss_dssp CTGGGGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHH
T ss_pred cccccCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChh
Confidence 22234567899999999999999 67766 8999999999999999999999863
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.5e-56 Score=438.23 Aligned_cols=354 Identities=23% Similarity=0.303 Sum_probs=301.2
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~ 116 (409)
++|+.+.|.++++++ ||++|++++ ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+
T Consensus 5 ~~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 77 (509)
T 3ivr_A 5 DFTLADVYRRNAALF----PDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77 (509)
T ss_dssp CCCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 389999999999999 999999998 8999999999999999999999 999999999999999999999999999
Q ss_pred HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh----c-CC-eEEEeCC--CcchhhhcccCCcccccccc
Q 015325 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L-KH-RTILIDS--PEFDSMTMSWNSKHELDRAK 188 (409)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~-~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 188 (409)
++|++++|+++.++.+++.+++++++++++|++.+....+.. . .. .++.++. ..+..+..... ........
T Consensus 78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (509)
T 3ivr_A 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS-DTPFSAPE 156 (509)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC-CSCCCCCC
T ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC-CCCCCcCC
Confidence 999999999999999999999999999999999886655221 1 11 2333322 12222222111 11222345
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCC
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~ 268 (409)
..++++++|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|.+++...+.++..|++.++...+
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~ 235 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF 235 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEeccc
Confidence 6789999999999999999999999999999998888888 789999999999999999997777777777777777788
Q ss_pred CHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccce
Q 015325 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (409)
Q Consensus 269 ~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 348 (409)
++..+++.|+++++|++.++|+++..+++.. ....+++||.++.+|++ ++.+++.+.+|++++++.||+||+++.
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~ 310 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGL 310 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence 9999999999999999999999999999875 34457899999999987 899999999999999999999999876
Q ss_pred ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 349 ~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
++.... .....++|+|+++++++|+| ++|+++++|+.|||+|+|++++.|||++|.
T Consensus 311 ~~~~~~---~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~ 366 (509)
T 3ivr_A 311 STFAPY---RDRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAA 366 (509)
T ss_dssp EEEEEG---GGSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHH
T ss_pred cccCcc---ccCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHH
Confidence 655322 12234599999999999999 789999999999999999999999999863
No 17
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9e-57 Score=442.60 Aligned_cols=358 Identities=20% Similarity=0.300 Sum_probs=298.3
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeC--CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A 114 (409)
+.|+.++|.++++++ |+++|+++. ..++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++|
T Consensus 17 ~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 378999999999999 999999952 225789999999999999999999 9999999999999999999999999
Q ss_pred HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CC-eEEEeCCC------cchhhhcccCCcc
Q 015325 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMTMSWNSKH 182 (409)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~~~~~~~~ 182 (409)
|+++|++++|+++.++.+++.+++++++++++|++.+....+... .. .++.++.. .+.++.....
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA--- 168 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC---
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC---
Confidence 999999999999999999999999999999999998766554321 12 23333321 1222222111
Q ss_pred cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh--hccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCC
Q 015325 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS--FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (409)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 260 (409)
......++++++|+|||||||.||||++||+++....... ...+ .+.+.|++++.+|++|.+++..++.++..|+
T Consensus 169 --~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~ 245 (541)
T 1v25_A 169 --DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 245 (541)
T ss_dssp --CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCEEEECSCTTSHHHHTHHHHHHHHTC
T ss_pred --CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCEEEEeccchhhhHHHHHHHHHhcCc
Confidence 1133457899999999999999999999999998776653 2344 5788999999999999999877888999999
Q ss_pred eEEEecC-CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325 261 TAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (409)
Q Consensus 261 ~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~ 339 (409)
++++.+. +++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.++| +.+ ++++++.
T Consensus 246 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~ 323 (541)
T 1v25_A 246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQG 323 (541)
T ss_dssp EEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeec
Confidence 9999864 799999999999999999999999999987654444567899999999999999999999 667 9999999
Q ss_pred cCcccccceecccCCCCC---------CCCCCccccccCCceEEEecCCCCCCCCC--CCcceEEEecCccccccCCCCC
Q 015325 340 YGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 340 yG~tE~~~~~~~~~~~~~---------~~~~~s~G~p~~~~~v~i~d~~~g~~~~~--g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
||+||++..++....... ....+++|+|+++++++|+| ++|++++. ++.|||+|+||+++.||||+|.
T Consensus 324 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~ 402 (541)
T 1v25_A 324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEE 402 (541)
T ss_dssp EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHH
T ss_pred ccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChh
Confidence 999999876665322110 02347899999999999999 88999985 3689999999999999999863
No 18
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.9e-56 Score=448.86 Aligned_cols=363 Identities=18% Similarity=0.204 Sum_probs=298.4
Q ss_pred CCCCHH-HHHhhccCCCCCCCCCCcEEEeCC----CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325 36 APISAV-DYVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (409)
Q Consensus 36 ~~~~~~-~~l~~~~~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~ 110 (409)
..+|+. ++|.++++++ ||++|+++.. .++++||+||.++++++|+.|++ +|+++||+|+|+++|++++++
T Consensus 73 ~~~n~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vv 147 (652)
T 1pg4_A 73 GTLNLAANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAV 147 (652)
T ss_dssp CEECHHHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHH
T ss_pred CChhHHHHHHHHHhccC----CCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHH
Confidence 335654 5565666777 9999999731 24789999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH---------HH----hhc---CC-eEEEeCCC----
Q 015325 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KL----AKL---KH-RTILIDSP---- 169 (409)
Q Consensus 111 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~----~~~---~~-~~~~~~~~---- 169 (409)
++|||+++|++++|+++.++.+++.+++++++++++|+++.... .+ ... .. .++.++..
T Consensus 148 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 227 (652)
T 1pg4_A 148 AMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227 (652)
T ss_dssp HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC
T ss_pred HHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999875321 11 111 11 34444321
Q ss_pred --------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHH-HhhccCCCCCCCCEEEEe
Q 015325 170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFASSPKRVSPAVMLFT 240 (409)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~d~~l~~ 240 (409)
.|+++...... ........++++++|+|||||||.||||+++|++++..+. .....+ ++.++|++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~ 304 (652)
T 1pg4_A 228 DWQEGRDLWWRDLIEKASP--EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWCT 304 (652)
T ss_dssp CCCBTTEEEHHHHHTTSCS--CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEEC
T ss_pred cccCCCceeHHHHHhhcCC--CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-CCCCCCEEEEc
Confidence 12333322111 1222334578999999999999999999999999876654 334445 68899999999
Q ss_pred CchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceee
Q 015325 241 MPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVA 313 (409)
Q Consensus 241 ~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~ 313 (409)
.|++|.++. +.++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|.+... ....++++||.++
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~ 384 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILG 384 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEE
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEE
Confidence 999999998 778999999999999875 589999999999999999999999999998754 3455789999999
Q ss_pred ecCCCCCHHHHHHHHHhCC--CCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcce
Q 015325 314 CGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391 (409)
Q Consensus 314 ~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Ge 391 (409)
+||++++++++++|.+.++ ++++++.||+||+++.++.........+.+++|+|++|++++|+| ++|++++.|+.||
T Consensus 385 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GE 463 (652)
T 1pg4_A 385 SVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGN 463 (652)
T ss_dssp EESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEE
T ss_pred EecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEE
Confidence 9999999999999999983 289999999999987665432222345678999999999999999 8899999999999
Q ss_pred EEEec--CccccccCCCC
Q 015325 392 LSIRG--PTIMKGIFLPH 407 (409)
Q Consensus 392 i~v~g--~~v~~gY~~~~ 407 (409)
|+|+| |+++.||||++
T Consensus 464 l~i~g~~p~~~~gY~~~~ 481 (652)
T 1pg4_A 464 LVITDSWPGQARTLFGDH 481 (652)
T ss_dssp EEECSCCTTCCCEETTCH
T ss_pred EEEccCCCchhhhhcCCH
Confidence 99999 79999999986
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.2e-56 Score=444.49 Aligned_cols=351 Identities=18% Similarity=0.173 Sum_probs=297.6
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~ 116 (409)
..++.++|.++++++ ||++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+
T Consensus 74 ~~~l~~~l~~~a~~~----pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 146 (570)
T 4gr5_A 74 GACVHELFEAQAARA----PDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVL 146 (570)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 368999999999999 999999998 8899999999999999999999 999999999999999999999999999
Q ss_pred HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (409)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (409)
++|++++|+++.++.+++.+++++++++++|++......+.. ...+....... ... ..........++++++
T Consensus 147 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~----~~~--~~~~~~~~~~~~d~a~ 218 (570)
T 4gr5_A 147 KAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEAA----SDA--PAGNLATGVGPEDVAC 218 (570)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC-------------CCCCCCCCCTTSEEE
T ss_pred HHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeecccc----ccc--cccccCCCCCCCCeEE
Confidence 999999999999999999999999999999999865443321 11222111100 000 0011223456799999
Q ss_pred EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec--CCCHHHHH
Q 015325 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (409)
Q Consensus 197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~ 274 (409)
|+|||||||.||||++||+++...... ...+ ++.++|++++..|++|..+.+.++.++..|+++++.+ .+++..++
T Consensus 219 i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 296 (570)
T 4gr5_A 219 VMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIG 296 (570)
T ss_dssp EECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHH
T ss_pred EEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHH
Confidence 999999999999999999999766544 3344 6889999999999999777778899999999999986 47899999
Q ss_pred HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (409)
Q Consensus 275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (409)
+.|+++++|++.++|+++..|.+... ..+++||.+++||++++.++.+++.+.++++++++.||+||+++..+....
T Consensus 297 ~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 373 (570)
T 4gr5_A 297 ELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373 (570)
T ss_dssp HHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeee
Confidence 99999999999999999999987642 347899999999999999999999999999999999999999876554221
Q ss_pred C--CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 355 P--DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 355 ~--~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
. .......++|+|+++++++|+| ++|+++++|+.|||+|+|++++.|||++|.
T Consensus 374 ~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~ 428 (570)
T 4gr5_A 374 VAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPA 428 (570)
T ss_dssp CGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHH
T ss_pred cccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCch
Confidence 1 1223456799999999999999 889999999999999999999999999863
No 20
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.8e-56 Score=434.73 Aligned_cols=353 Identities=22% Similarity=0.265 Sum_probs=296.5
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~ 117 (409)
+|+.++|.+.++++ ||++|+++...++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus 2 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 76 (504)
T 1t5h_X 2 QTVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHR 76 (504)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC----CCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57899999999999 999999987556899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEccCCCCCCHHHHHHHHhhcCCeEEEE--cCchHHHH-hhc-CCeEEEeCCCcchhhhcccC---CcccccccccC
Q 015325 118 LGVIISPANPVNTESEISRQIQLSNPVIAFA--TSSVVHKL-AKL-KHRTILIDSPEFDSMTMSWN---SKHELDRAKVC 190 (409)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 190 (409)
+|++++|+++.++.+++.+++++++++++++ +.+....+ ... ..+++. ++++..... ...........
T Consensus 77 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 151 (504)
T 1t5h_X 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQRE 151 (504)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCC
T ss_pred hCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcccccCCccCCCCCC
Confidence 9999999999999999999999999999999 76655544 322 223221 233322210 00011113456
Q ss_pred CCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCC--CCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC
Q 015325 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR 267 (409)
Q Consensus 191 ~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 267 (409)
++++++|+|||||||.||||++||+++...+......+ ++ .+.|++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 230 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE 230 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC
Confidence 78999999999999999999999999998888777766 56 788999999999999998 678999999999999999
Q ss_pred CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccc
Q 015325 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (409)
Q Consensus 268 ~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~ 345 (409)
+++..+++.|+++++|++.++|+++..|.+... ....++++||.+++||+++++++.++|++.+ +..+++.||+||+
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 309 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEA 309 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccc
Confidence 999999999999999999999999999987642 2445689999999999999999999999999 7899999999999
Q ss_pred cceecccCCCCCCCCCCccccccCCceEEEecCCCC---CCCCCCCcceEEEe-cCccccccCCCCC
Q 015325 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG---DSLPPGKEGELSIR-GPTIMKGIFLPHF 408 (409)
Q Consensus 346 ~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g---~~~~~g~~Gei~v~-g~~v~~gY~~~~~ 408 (409)
+. +.. .. ....+++|.|+++++++|+| +++ +++++|+.|||+|+ |++++.||||+|+
T Consensus 310 ~~-~~~-~~---~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~ 370 (504)
T 1t5h_X 310 MN-SLY-MR---QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370 (504)
T ss_dssp EE-EEE-EE---SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHH
T ss_pred cc-ccc-cc---CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCch
Confidence 32 222 11 34568899999999999999 666 99999999999999 9999999999863
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.8e-56 Score=439.06 Aligned_cols=356 Identities=19% Similarity=0.265 Sum_probs=301.3
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~ 117 (409)
.|+.+.|.+.++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||++
T Consensus 4 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQ----ADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTK 76 (521)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999998 8899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (409)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (409)
+|++++|+++.++.+++.+++++++++++|++++....+. ....+... .+....... ..........++++++|
T Consensus 77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~d~a~i 150 (521)
T 3l8c_A 77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--GISLVSLS--EIESAKLAE--MPYERTHSVKGDDNYYI 150 (521)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--TSEEEEHH--HHHHHHHHT--CCCCCSSCCCTTSEEEE
T ss_pred hCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--cCcccchh--hhhhccccc--CCcccCCCCCCCCcEEE
Confidence 9999999999999999999999999999999876433221 11222111 111111011 00112234567899999
Q ss_pred EcCCCCCCCcchhhhccHHHHHHHHHhhcc--CCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCC---CHHH
Q 015325 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFAS--SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF---DLKM 272 (409)
Q Consensus 198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~---~~~~ 272 (409)
+|||||||.||||++||+++...+...... + .....+++++..|++|..++..++.++..|+++++.+.. ++..
T Consensus 151 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 229 (521)
T 3l8c_A 151 IFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQ 229 (521)
T ss_dssp EECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHH
T ss_pred EEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHH
Confidence 999999999999999999999877766554 4 578899999999999999988889999999999998764 8999
Q ss_pred HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (409)
Q Consensus 273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (409)
+++.+.++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.|+++++++.||+||+++.++..
T Consensus 230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 309 (521)
T 3l8c_A 230 LFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAI 309 (521)
T ss_dssp HHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhcee
Confidence 99999999999999999999999988766667789999999999999999999999999999999999999998765542
Q ss_pred CCCC---CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 353 VGPD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 353 ~~~~---~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
.... ......++|+|+++++++|+| ++|+++++|+.|||+|+||+++.||||+|.
T Consensus 310 ~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~ 367 (521)
T 3l8c_A 310 EITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPE 367 (521)
T ss_dssp EECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHH
T ss_pred ecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCch
Confidence 2111 123457899999999999999 889999999999999999999999999863
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=6e-56 Score=438.10 Aligned_cols=347 Identities=18% Similarity=0.212 Sum_probs=293.0
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~ 117 (409)
.++.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus 39 ~~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 39 KTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 7899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC--CeEEEeCCCcchhhhcccCCcccccccccCCCCEE
Q 015325 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (409)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (409)
+|++++|+++.++.+++.+++++++++++|++.+....+.... ..+..++...+.. ... ........+++++
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~d~a 185 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI---REG---TNLHVPSKSTDLA 185 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT---SCC---SCCCCCCCTTSEE
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhcc---ccC---ccCCCCCCCCCeE
Confidence 9999999999999999999999999999999987766554332 2233332211110 000 1112234578999
Q ss_pred EEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHH
Q 015325 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (409)
Q Consensus 196 ~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~ 272 (409)
+|+|||||||.||||++||+++.+.+......+ ++.+.|++++..|++|..+++.++.++..|+++++.+. +++..
T Consensus 186 ~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 264 (563)
T 1amu_A 186 YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264 (563)
T ss_dssp EEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH
T ss_pred EEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHH
Confidence 999999999999999999999998888777777 68899999999999999998888999999999999875 68999
Q ss_pred HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (409)
Q Consensus 273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (409)
+++.++++++|++.++|+++..+... .+++||.+++||+++++++.++|++. +++++.||+||++..++..
T Consensus 265 ~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 265 FEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTW 335 (563)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheee
Confidence 99999999999999999999877543 35789999999999999999999764 6899999999998765543
Q ss_pred CCC-CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 353 VGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 353 ~~~-~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
... .......++|+|+++++++|+| ++|++++.|+.|||+|+|++++.|||++|+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe 391 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPE 391 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHH
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCch
Confidence 222 2223567899999999999999 899999999999999999999999999863
No 23
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.6e-55 Score=435.69 Aligned_cols=356 Identities=18% Similarity=0.236 Sum_probs=296.7
Q ss_pred CCH-HHHHhhccCC-----CCCCCCCCcEEEeCC---CCceeeHHHHHHHHHHHHHHhHhcc-CCCCCCEEEEEcCCCCc
Q 015325 38 ISA-VDYVSSLRAT-----LPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIE 107 (409)
Q Consensus 38 ~~~-~~~l~~~~~~-----~~~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~~-gv~~g~~V~i~~~~~~~ 107 (409)
+|+ .++|.+.+++ + |+++|+++.+ .++++||+||.++++++|++|++ . |+++||+|+|+++|+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~----p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKR----PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSS----CCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHH
T ss_pred ccHHHHHHHHHHhhccccCC----CCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHH
Confidence 555 5777777776 7 9999999732 13789999999999999999998 8 99999999999999999
Q ss_pred hHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CC-eEEEeCCC------cchhhh
Q 015325 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMT 175 (409)
Q Consensus 108 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~ 175 (409)
++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+... .. .++.++.. .+.++.
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLL 191 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHH
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHh
Confidence 9999999999999999999999999999999999999999998776555321 12 23333321 133332
Q ss_pred cccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHH--HHHHhhccCCCCCCCCEEEEeCchhhHHhHH-HH
Q 015325 176 MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FC 252 (409)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~ 252 (409)
..... ........++++++|+|||||||.||||++||+ ++. ..... ..+ ++.+.|++++..|++|.+++. .+
T Consensus 192 ~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~~~~ 266 (570)
T 3c5e_A 192 NEAST--THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-GLQASDIMWTISDTGWILNILCSL 266 (570)
T ss_dssp HHSCS--CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-SCCTTCEEEECCCTTSHHHHHHTT
T ss_pred hcccc--cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-CCCCCceEEEcCchHHHHHHHHHH
Confidence 22211 112234567899999999999999999999999 544 33333 555 688999999999999999984 78
Q ss_pred HHHHHhCCeEEEec--CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHh
Q 015325 253 FRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330 (409)
Q Consensus 253 ~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~ 330 (409)
+.++..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.. ....++++||.+++||+++++++.++|++.
T Consensus 267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 99999999999986 689999999999999999999999999999863 334567899999999999999999999998
Q ss_pred CCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEe-----cCccccccCC
Q 015325 331 FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-----GPTIMKGIFL 405 (409)
Q Consensus 331 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~-----g~~v~~gY~~ 405 (409)
+ ++++++.||+||++..++. ........+++|+|+++++++|+| ++|+++++|+.|||+|+ |++++.|||+
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~--~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~ 421 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMV--SKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEEC--CTTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETT
T ss_pred h-CCchhhccchhhcccceec--CcccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccC
Confidence 8 8999999999999865544 222345678999999999999999 78999999999999999 9999999999
Q ss_pred CCC
Q 015325 406 PHF 408 (409)
Q Consensus 406 ~~~ 408 (409)
+|.
T Consensus 422 ~~~ 424 (570)
T 3c5e_A 422 NPD 424 (570)
T ss_dssp CHH
T ss_pred Chh
Confidence 863
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.2e-55 Score=443.29 Aligned_cols=370 Identities=17% Similarity=0.228 Sum_probs=299.9
Q ss_pred CCCCCCCCCCCHHH-HHhhccCCCCCCCCCCcEEEeC----CCCceeeHHHHHHHHHHHHHHhH-hccCCCCCCEEEEEc
Q 015325 29 IDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLS 102 (409)
Q Consensus 29 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~~~~la~~L~-~~~gv~~g~~V~i~~ 102 (409)
..|.+ +..+|... .|.++++++ |+++|+++. ..++++||+||.++++++|+.|+ + +|+++||+|+|++
T Consensus 73 ~~wf~-~~~~n~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~ 146 (663)
T 1ry2_A 73 NAWFL-NGQLNACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYM 146 (663)
T ss_dssp CCBST-TCEECHHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECC
T ss_pred CCcCC-CCCccHHHHHHHHHhccC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEc
Confidence 34544 33466654 555666777 999999973 13578999999999999999999 8 9999999999999
Q ss_pred CCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH---------HHhh----c-CC-eEEEeC
Q 015325 103 TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLAK----L-KH-RTILID 167 (409)
Q Consensus 103 ~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~----~-~~-~~~~~~ 167 (409)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.... .+.+ . .. .++.++
T Consensus 147 ~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~ 226 (663)
T 1ry2_A 147 PMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYR 226 (663)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999875421 1111 1 11 233333
Q ss_pred CC-------------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHH-hhccCCCCCC
Q 015325 168 SP-------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVS 233 (409)
Q Consensus 168 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~ 233 (409)
.. .|.++...... ........++++++|+|||||||.||||+++|++++..... ....+ .+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~ 303 (663)
T 1ry2_A 227 KTNNPSVAFHAPRDLDWATEKKKYKT--YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-DTHQ 303 (663)
T ss_dssp SSCCSSCCCCSSSEEEHHHHHTTSCS--CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-CCCS
T ss_pred cCCCCccccCCCccccHHHHHhhcCC--CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-CCCC
Confidence 21 12222222111 12223446789999999999999999999999998766543 34445 6889
Q ss_pred CCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCC
Q 015325 234 PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDL 306 (409)
Q Consensus 234 ~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l 306 (409)
.|++++..|++|..+. +.++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|.+... ....++
T Consensus 304 ~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l 383 (663)
T 1ry2_A 304 EDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSL 383 (663)
T ss_dssp SCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCC
T ss_pred CcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCc
Confidence 9999999999999998 778999999999999864 589999999999999999999999999998754 345678
Q ss_pred CCcceeeecCCCCCHHHHHHHHHhCC--CCceecccCcccccceecccCC-CCCCCCCCccccccCCceEEEecCCCCCC
Q 015325 307 SSLETVACGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVDPETGDS 383 (409)
Q Consensus 307 ~~Lr~v~~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~s~G~p~~~~~v~i~d~~~g~~ 383 (409)
++||.+++|||++++++++++.+.++ ++++++.||+||+++.++.... .....+++++|+|++|++++|+|+++|++
T Consensus 384 ~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~ 463 (663)
T 1ry2_A 384 KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEE 463 (663)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTC
T ss_pred CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCc
Confidence 99999999999999999999999983 3899999999999876554222 12345678999999999999999549999
Q ss_pred CCC-CCcceEEEec--CccccccCCCC
Q 015325 384 LPP-GKEGELSIRG--PTIMKGIFLPH 407 (409)
Q Consensus 384 ~~~-g~~Gei~v~g--~~v~~gY~~~~ 407 (409)
++. |+.|||+|+| |+++.|||+++
T Consensus 464 v~~~g~~Gel~i~g~~p~~~~gy~~~~ 490 (663)
T 1ry2_A 464 LNTSHAEGVLAVKAAWPSFARTIWKNH 490 (663)
T ss_dssp EECSSCEEEEEESSCCTTSCCEETTCH
T ss_pred CCCCCcceEEEEecCCCchhcccccCh
Confidence 998 9999999999 58999999986
No 25
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=5e-55 Score=436.58 Aligned_cols=357 Identities=21% Similarity=0.279 Sum_probs=299.4
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~ 116 (409)
..++.++|.++++ ||++|++++ ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+
T Consensus 26 ~~~l~~~~~~~a~------pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l 96 (617)
T 3rg2_A 26 DLPLTDILTRHAA------SDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALL 96 (617)
T ss_dssp CCCTTHHHHTTTT------CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhhC------CCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 3889999998876 799999998 8899999999999999999999 999999999999999999999999999
Q ss_pred HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--------HHHh-h-cCCeEEE-eCCCc---chhhhcccCCcc
Q 015325 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA-K-LKHRTIL-IDSPE---FDSMTMSWNSKH 182 (409)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~-~~~~~~~-~~~~~---~~~~~~~~~~~~ 182 (409)
++|++++|+++..+.+++.++++++++++++++.... ..+. . .....+. .+... +.+.......
T Consensus 97 ~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 174 (617)
T 3rg2_A 97 KLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAE-- 174 (617)
T ss_dssp HHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCS--
T ss_pred hcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhccccc--
Confidence 9999999999999999999999999999999987543 1111 1 1222222 22211 2222221111
Q ss_pred cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHH--HHHHHHHhCC
Q 015325 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALME 260 (409)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~--~~~~~l~~G~ 260 (409)
........++++++|+|||||||.||||+++|+++.+.+......+ ++.+.+++++..|++|.+++. .++.++..|+
T Consensus 175 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~ 253 (617)
T 3rg2_A 175 DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG 253 (617)
T ss_dssp SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTC
T ss_pred ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CCCCcceEEEeccchhhhhhhHHHHHHHHHcCC
Confidence 1222345678999999999999999999999999999998888877 689999999999999998883 6899999999
Q ss_pred eEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCC--CCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (409)
Q Consensus 261 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 338 (409)
++++.+.+++..++..++++++|++.++|+++..+++.... ....+++||.+++||+++++++.++|.+.+ ++++++
T Consensus 254 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~ 332 (617)
T 3rg2_A 254 TVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQ 332 (617)
T ss_dssp EEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEE
Confidence 99999989999999999999999999999999998875332 233688999999999999999999999999 899999
Q ss_pred ccCcccccceecccCCCCCCCCCCcccccc-CCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~-~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
.||+||++..++.. .........++|+|+ ++++++|+| ++|++++.|+.|||+|+|+++++||||+|+
T Consensus 333 ~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~ 401 (617)
T 3rg2_A 333 VFGMAEGLVNYTRL-DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQ 401 (617)
T ss_dssp EEEETTEEEEECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHH
T ss_pred EeccCcceeecccC-CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChh
Confidence 99999987554431 111122335789997 788999999 899999999999999999999999999863
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.8e-55 Score=438.67 Aligned_cols=359 Identities=22% Similarity=0.262 Sum_probs=299.6
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeCC--CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A 114 (409)
..|+.+.|.++++++ |+++|+++.+ .++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++||
T Consensus 10 ~~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA 84 (590)
T 3kxw_A 10 CQSLVDVVRLRALHS----PNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLG 84 (590)
T ss_dssp CSSHHHHHHHHHHHC----TTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhC----CCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHH
Confidence 489999999999999 9999998632 24799999999999999999999 9999999999999999999999999
Q ss_pred HHHhCCeEccCCCCC---CHHHHHHHHhhcCCeEEEEcCchHHHHhhcCC-------eEEEeCCCcchhhhcccCCcccc
Q 015325 115 LLSLGVIISPANPVN---TESEISRQIQLSNPVIAFATSSVVHKLAKLKH-------RTILIDSPEFDSMTMSWNSKHEL 184 (409)
Q Consensus 115 ~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 184 (409)
|+++|++++|+++.. +.+++.++++.+++++++++.+....+..... .+..+. .+.+..... ...
T Consensus 85 ~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~ 159 (590)
T 3kxw_A 85 CLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA---LESIELNRS--SSW 159 (590)
T ss_dssp HHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---GGGCCGGGG--GGC
T ss_pred HHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---chhcccccc--ccC
Confidence 999999999999988 45789999999999999999877665543210 011111 111111111 122
Q ss_pred cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHH-HHHHHHhCCeEE
Q 015325 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAV 263 (409)
Q Consensus 185 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v 263 (409)
......++++++|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|.+|+.. ++.++..|++++
T Consensus 160 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v 238 (590)
T 3kxw_A 160 QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAI 238 (590)
T ss_dssp CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEE
T ss_pred CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEE
Confidence 23355678999999999999999999999999999999888888 7899999999999999999954 899999999999
Q ss_pred EecCC----CHHHHHHHHHHhcceeEeechHHHHHHHhCC---CCCCCCCCCcceeeecCCCCCHHHHHHHHHhCC----
Q 015325 264 VMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG---STDGYDLSSLETVACGAAPLGKDTIMAFASKFP---- 332 (409)
Q Consensus 264 ~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~---~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~---- 332 (409)
+.+.+ ++..+++.|+++++|++.++|+++..+.+.. .....++++||.+++||+++++++.++|.+.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~ 318 (590)
T 3kxw_A 239 MMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGF 318 (590)
T ss_dssp ECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred EeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence 99765 7899999999999999999999999887753 234567899999999999999999999999873
Q ss_pred -CCceecccCcccccceecccCC-------------------------CCCCCCCCccccccCCceEEEecCCCCCCCCC
Q 015325 333 -KVVLVQAYGLTESTAGVFRTVG-------------------------PDECRRWGSTGRLSAGLEAKIVDPETGDSLPP 386 (409)
Q Consensus 333 -~~~i~~~yG~tE~~~~~~~~~~-------------------------~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~ 386 (409)
+.++++.||+||+++.++.... ........++|+|+++ ++|+|+++++++++
T Consensus 319 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~ 396 (590)
T 3kxw_A 319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDF 396 (590)
T ss_dssp CGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCT
T ss_pred CccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCC
Confidence 4589999999999887664221 1112234678999998 88999777999999
Q ss_pred CCcceEEEecCccccccCCCCC
Q 015325 387 GKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 387 g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
|+.|||+|+||+++.||||+|+
T Consensus 397 g~~GEl~v~g~~v~~GY~~~p~ 418 (590)
T 3kxw_A 397 DQVGEIWVQSNSVAKGYWNQPE 418 (590)
T ss_dssp TBCEEEEEESTTSCCCBTTCHH
T ss_pred CCEEEEEEeCCcccccccCChh
Confidence 9999999999999999999863
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=9.8e-55 Score=424.73 Aligned_cols=348 Identities=21% Similarity=0.274 Sum_probs=287.0
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~ 117 (409)
||+.++|.++++++ ||++|+++. ++++||+||.++++++|+.|++ . +||+|+++++|+++++++++||++
T Consensus 1 mtl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~ 70 (501)
T 3ipl_A 1 MSLDFWLYKQAQQN----GHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWL 70 (501)
T ss_dssp --CCCHHHHHHHHH----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----CCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57788999999999 999999998 7899999999999999999998 5 899999999999999999999999
Q ss_pred hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCeEEEeC----C-------Ccc----hhhhccc
Q 015325 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILID----S-------PEF----DSMTMSW 178 (409)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~----~-------~~~----~~~~~~~ 178 (409)
+|++++|+++.++.+++.+++++++++++|++.+........ ........ . ..+ ......
T Consensus 71 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (501)
T 3ipl_A 71 ANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPK- 149 (501)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC---------------------------------
T ss_pred cCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhcccc-
Confidence 999999999999999999999999999999987644322110 00000000 0 000 000000
Q ss_pred CCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHh
Q 015325 179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAAL 258 (409)
Q Consensus 179 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~ 258 (409)
............++++++|+|||||||.||||++||+++...+......+ ++.++|++++..|++|.+++..++.++..
T Consensus 150 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~ 228 (501)
T 3ipl_A 150 ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIE 228 (501)
T ss_dssp CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred CCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEEeCcHHHHHHHHHHHHHHHc
Confidence 00001112345678999999999999999999999999999998888888 78999999999999999999779999999
Q ss_pred CCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325 259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (409)
Q Consensus 259 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 338 (409)
|+++++.+.+++..+++.|+++++|++.++|+++..|.+...... .+||.+++||+++++++.+++.+ + ++++++
T Consensus 229 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~ 303 (501)
T 3ipl_A 229 GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLPIYN 303 (501)
T ss_dssp TCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCCEEE
T ss_pred CceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCCEec
Confidence 999999999999999999999999999999999999998764433 27999999999999999999988 4 899999
Q ss_pred ccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
.||+||+++.++............++|+|+++++++|+|++ +|+.|||+|+|++++.|||+++.
T Consensus 304 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~ 367 (501)
T 3ipl_A 304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTD 367 (501)
T ss_dssp EEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTT
T ss_pred cccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChh
Confidence 99999998755442222223456789999999999999943 56789999999999999999875
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.6e-54 Score=428.89 Aligned_cols=358 Identities=18% Similarity=0.157 Sum_probs=291.7
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeCCC--------CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCch
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINSVT--------GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~ 108 (409)
.+|+.++|.+.++++ ||++|+++.+. .+++||+||.++++++|+.|++ .|+ +||+|+++++|++++
T Consensus 19 ~~tl~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 19 TVPPSHYIETWAKTH----PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp CCCTTHHHHHHHHHC----TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHH
T ss_pred cCCHHHHHHHHHHHC----CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHH
Confidence 389999999999999 99999987521 2789999999999999999999 899 799999999999999
Q ss_pred HHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-CCeEEEeCCCcchhhhcccCCccccccc
Q 015325 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRA 187 (409)
Q Consensus 109 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
++++|||+++|++++|+++.++.+++.+++++++++++|++++........ ...++......+.+....... .....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 170 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDT--SDILN 170 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCC--SCCCC
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccc--ccccc
Confidence 999999999999999999999999999999999999999987654433211 112222222222222221111 11223
Q ss_pred ccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC-------CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCC
Q 015325 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (409)
Q Consensus 188 ~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-------~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 260 (409)
...++++++|+|||||||.||||++||+++...+......+ ..+...+++++..|++|..++..++.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 34568899999999999999999999999987776543321 13678899999999999988888899999999
Q ss_pred eEEEecCCC-HHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325 261 TAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (409)
Q Consensus 261 ~~v~~~~~~-~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~ 339 (409)
++++.+.+. +..+++.++++++|++.++|+++..+... ..++++||.+++||+++++++.++|++.+ ++++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 325 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNV 325 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEe
Confidence 999987643 57788999999999999999999887543 34578999999999999999999999877 8999999
Q ss_pred cCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
||+||++..++.... .......++|+|+++++++|+|+++++++++|+.|||+|+|++++.||||+|.
T Consensus 326 YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~ 393 (562)
T 3ite_A 326 YGPTEVTIGCSAGRI-LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPD 393 (562)
T ss_dssp ECCGGGCSCSEEEEC-CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTT
T ss_pred eccchheeeeeeeee-cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcc
Confidence 999999876554322 22345678999999999999998889999999999999999999999999885
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.1e-54 Score=428.64 Aligned_cols=359 Identities=18% Similarity=0.228 Sum_probs=297.7
Q ss_pred CCCHHHHHhhccCCCCCCCCCCcEEEeCC-CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325 37 PISAVDYVSSLRATLPWRDDDTVALINSV-TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (409)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~ 115 (409)
..|+.++|.++++++ |+.+++.+.. .++++||+||.++++++|+.|++ +|+++||+|+++++|+++++++++||
T Consensus 20 ~~tl~~~l~~~a~~~----p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~ 94 (576)
T 3gqw_A 20 FPTLVDALDYAALSS----AGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-LNLKKGDRVALIAETSSEFVEAFFAC 94 (576)
T ss_dssp CSSHHHHHHHHTTSS----CEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCC----CCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 379999999999988 9988876542 24789999999999999999999 99999999999999999999999999
Q ss_pred HHhCCeEccCCCCCC-------HHHHHHHHhhcCCeEEEEcCchHHHHhhcC---CeEEEeCCCcchhhhcccCCccccc
Q 015325 116 LSLGVIISPANPVNT-------ESEISRQIQLSNPVIAFATSSVVHKLAKLK---HRTILIDSPEFDSMTMSWNSKHELD 185 (409)
Q Consensus 116 ~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (409)
+++|++++|+++.++ .+++.++++.+++++++++.+....+.... .....+.. .+.. ... .....
T Consensus 95 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~ 169 (576)
T 3gqw_A 95 QYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSH-AWFK---ALP-EADVA 169 (576)
T ss_dssp HHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEH-HHHH---TSC-CCCCC
T ss_pred HHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecch-hhhh---ccc-ccccc
Confidence 999999999999998 899999999999999999988766554221 11111110 0100 000 00122
Q ss_pred ccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhcc-CCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEE
Q 015325 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS-SPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAV 263 (409)
Q Consensus 186 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v 263 (409)
.....++++++|+|||||||.||||+++|+++...+...... + ++.++|++++.+|++|.+++ ..++.++..|++++
T Consensus 170 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~ 248 (576)
T 3gqw_A 170 LQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI-KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVD 248 (576)
T ss_dssp CCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS-CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEE
T ss_pred cCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc-CCCCcceEEEcCCccccccHHHHHHHHHhcCceEE
Confidence 234467899999999999999999999999999888777655 5 68899999999999999999 45778899999998
Q ss_pred EecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC---CCCCCCCCcceeeecCCCCCHHHHHHHHHhCC----
Q 015325 264 VMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFP---- 332 (409)
Q Consensus 264 ~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~---~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~---- 332 (409)
+.+. +++..+++.++++++|++.++|+++..+.+... ....++++||.+++||+++++++.++|.+.|+
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 328 (576)
T 3gqw_A 249 YLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNF 328 (576)
T ss_dssp ECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred EcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCC
Confidence 8864 588999999999999999999999988876543 23556899999999999999999999999875
Q ss_pred -CCceecccCcccccceecccCCCCCC--------------------------CCCCccccccCCceEEEecCCCCCCCC
Q 015325 333 -KVVLVQAYGLTESTAGVFRTVGPDEC--------------------------RRWGSTGRLSAGLEAKIVDPETGDSLP 385 (409)
Q Consensus 333 -~~~i~~~yG~tE~~~~~~~~~~~~~~--------------------------~~~~s~G~p~~~~~v~i~d~~~g~~~~ 385 (409)
++++++.||+||++..++........ ....++|+|+++++++|+| ++|++++
T Consensus 329 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~ 407 (576)
T 3gqw_A 329 DNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVA 407 (576)
T ss_dssp CGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCC
T ss_pred CcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCC
Confidence 78999999999998877653211110 0113789999999999999 9999999
Q ss_pred CCCcceEEEecCccccccCCCC
Q 015325 386 PGKEGELSIRGPTIMKGIFLPH 407 (409)
Q Consensus 386 ~g~~Gei~v~g~~v~~gY~~~~ 407 (409)
+|+.|||+|+|++++.|||++|
T Consensus 408 ~g~~GEl~v~g~~~~~gY~~~~ 429 (576)
T 3gqw_A 408 ERVVGHICISGPSLMSGYFGDQ 429 (576)
T ss_dssp TTBCEEEEEESTTSCCCBTTCH
T ss_pred CCCeEEEEEeCccccccccCCc
Confidence 9999999999999999999986
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.5e-53 Score=457.62 Aligned_cols=352 Identities=20% Similarity=0.215 Sum_probs=299.9
Q ss_pred CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~ 117 (409)
.++.++|.++++++ ||++|++++ ++++||+||.++++++|+.|++ .|+++|++|+|+++|+++++++++||++
T Consensus 464 ~~l~~~~~~~~~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailk 536 (1304)
T 2vsq_A 464 KPLTYWFKEAVNAN----PDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLK 536 (1304)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999988 7899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC--CeEEEeCCCcchhhhcccCCcccccccccCCCCEE
Q 015325 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (409)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (409)
+|++++|++|.++.+++.++++++++++++++.+.......+. ...+.++.. .... ... ........+++++
T Consensus 537 aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~---~~~~~~~~~~~~a 610 (1304)
T 2vsq_A 537 AGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--TRFE-EQA---SDPATAIDPNDPA 610 (1304)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--GGGG-SCS---SCCCCCCCTTSEE
T ss_pred HCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--cccc-ccc---CCCCCCCCCCCeE
Confidence 9999999999999999999999999999999986654433221 122333221 1111 111 1122345678999
Q ss_pred EEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHH
Q 015325 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (409)
Q Consensus 196 ~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~ 272 (409)
||+|||||||.||||+++|+++.+. ......+ .+.+.|+++...|++|..+.+.++.++..|+++++.+. .++..
T Consensus 611 yiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~ 688 (1304)
T 2vsq_A 611 YIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER 688 (1304)
T ss_dssp EEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHH
T ss_pred EEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHH
Confidence 9999999999999999999999865 4445555 68899999999999999888899999999999999864 68999
Q ss_pred HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (409)
Q Consensus 273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (409)
+.+.|+++++|++.++|+++..+.... ...+++||.+++|||+++.++.++|.+.+++.+++|.||+||++..++..
T Consensus 689 l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 765 (1304)
T 2vsq_A 689 LTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAH 765 (1304)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheee
Confidence 999999999999999999999998752 22357899999999999999999999998788999999999998766543
Q ss_pred CCCC--CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325 353 VGPD--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 353 ~~~~--~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
.... ......++|+|+++++++|+| ++++++|.|+.|||+|+|+++++||||+|.
T Consensus 766 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~ 822 (1304)
T 2vsq_A 766 VVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRAD 822 (1304)
T ss_dssp ECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHH
T ss_pred eccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcc
Confidence 2221 233456899999999999999 889999999999999999999999999863
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.6e-54 Score=422.84 Aligned_cols=343 Identities=19% Similarity=0.247 Sum_probs=282.6
Q ss_pred CCHHHHHhhccCCCCCCCCC-CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325 38 ISAVDYVSSLRATLPWRDDD-TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (409)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~ 116 (409)
.|+.+.|.++++++ |+ ++|++++ ++++||+||.++++++|+.|.. |++|+++++|+++++++++||+
T Consensus 22 ~tl~~~l~~~a~~~----p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~------~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 22 SSLFPALSPAPTGA----PADRPALRFG--ERSLTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp --CCTTTSSCCCSG----GGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhC----CCCCeEEEEC--CeeeeHHHHHHHHHHHHhhccC------CCEEEEEcCCCHHHHHHHHHHH
Confidence 67888888888888 65 9999998 8999999999999999987753 7899999999999999999999
Q ss_pred HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (409)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (409)
++|++++|+++.++.+++.+++++++++++|++.+............+..+... ..........++++++
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~d~a~ 159 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRA----------RGAVPEDGADDGDPAL 159 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTC----------CCCCCCCCCCTTSEEE
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccccc----------ccCCCCCCCCCCCeEE
Confidence 999999999999999999999999999999998642111111122222222100 0011223456789999
Q ss_pred EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHH
Q 015325 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLK 275 (409)
Q Consensus 197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~ 275 (409)
|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|..++ ..++.++..|+++++.+.+++..+++
T Consensus 160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 238 (505)
T 3nyq_A 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR 238 (505)
T ss_dssp EEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHH
T ss_pred EEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHH
Confidence 99999999999999999999999988888877 68899999999999999998 67899999999999999999999999
Q ss_pred HHHHhcceeEeechHHHHHHHhCCCC---CCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325 276 AVEEFRVTHAAVTPPIVVAMSKGGST---DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (409)
Q Consensus 276 ~i~~~~~t~l~~~p~~l~~l~~~~~~---~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (409)
.+ ++++|+++++|+++..+.+.... ....++++|.+++||+++++++.+++++.+ ++++++.||+||++..++.
T Consensus 239 ~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~- 315 (505)
T 3nyq_A 239 EL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSV- 315 (505)
T ss_dssp HH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEEC-
T ss_pred HH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhccccccc-
Confidence 99 89999999999999999874221 122467899999999999999999999998 8999999999999876554
Q ss_pred CCCCCCCCCCccccccCCceEEEecCCCCCCCCC---CCcceEEEecCccccccCCCCC
Q 015325 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGIFLPHF 408 (409)
Q Consensus 353 ~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~---g~~Gei~v~g~~v~~gY~~~~~ 408 (409)
........+++|+|+++++++|+| ++|++++. |+.|||+|+|++++.||||+|.
T Consensus 316 -~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~ 372 (505)
T 3nyq_A 316 -RADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPD 372 (505)
T ss_dssp -CTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHH
T ss_pred -CCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChh
Confidence 334455678999999999999999 88999886 8999999999999999999863
No 32
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=100.00 E-value=2.5e-33 Score=262.68 Aligned_cols=207 Identities=19% Similarity=0.167 Sum_probs=172.7
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhh---ccCCCCCCCCEEEEeCch-hhHHhHHHHHHHHHhCCeEEE
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~v~ 264 (409)
..++++++|+|||||||.||+|.++|+++........ ... +..++|++++..|+ +|..++...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR-PGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTS-TTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhh-CCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 4678899999999999999999999999998887543 333 57889999999999 99999977777799999 666
Q ss_pred ecCCCHH-----------------------HHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCH
Q 015325 265 MQRFDLK-----------------------MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (409)
Q Consensus 265 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~ 321 (409)
...+++. .+++.|+++++|++.++|+++..|++........+++||.+++||+++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 6677877 88889999999999999999999987743223446789999999999999
Q ss_pred HHHHHHH-HhCCCCceecccCcccccceecccCCCCCCCCCC-ccccc------cCCceEEEecCCCCCCCCCCCcceEE
Q 015325 322 DTIMAFA-SKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG-STGRL------SAGLEAKIVDPETGDSLPPGKEGELS 393 (409)
Q Consensus 322 ~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~-s~G~p------~~~~~v~i~d~~~g~~~~~g~~Gei~ 393 (409)
++.++++ +.||++++++.||+||+++.+... +. ++|+| +++++++|+|+++|+++++|+.|||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~--------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSL--------LITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC--------CBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecc--------ccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEE
Confidence 9999999 999999999999999998655331 12 58898 99999999997699999999999999
Q ss_pred EecC---ccccccCC
Q 015325 394 IRGP---TIMKGIFL 405 (409)
Q Consensus 394 v~g~---~v~~gY~~ 405 (409)
|++. ..+.+|+.
T Consensus 318 vt~l~~~~~l~ry~t 332 (369)
T 3hgu_A 318 VTHLSPWAFYPRVAE 332 (369)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEcCcccccccccC
Confidence 9973 23556654
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.97 E-value=2.1e-31 Score=255.16 Aligned_cols=204 Identities=21% Similarity=0.211 Sum_probs=171.7
Q ss_pred cCC-CCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh---hccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEE
Q 015325 189 VCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAV 263 (409)
Q Consensus 189 ~~~-~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v 263 (409)
..+ +++++++|||||||.||+|++||+++....... ...+ ++.++|+++...|+.|..+. ..++.++..|++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 345 789999999999999999999999997665554 3334 57899999999998765555 67788999999999
Q ss_pred EecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCC--CCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccC
Q 015325 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (409)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG 341 (409)
+.+.+++..+++.|+++++|++.++|+++..|.+....... .+++||.+++||+++++++.++|++.| ++++++.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence 99888999999999999999999999999999876433333 378999999999999999999999999 999999999
Q ss_pred cccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCc
Q 015325 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398 (409)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~ 398 (409)
+||+++.++.... ......|.|.++++++|+|+++|+++++|+.|||+|+|..
T Consensus 240 ~TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~ 292 (436)
T 3qov_A 240 MTEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD 292 (436)
T ss_dssp EGGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS
T ss_pred chhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC
Confidence 9999654332111 1223477788899999999999999999999999999853
No 34
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=1.5e-31 Score=248.86 Aligned_cols=195 Identities=19% Similarity=0.190 Sum_probs=169.9
Q ss_pred CCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCH
Q 015325 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL 270 (409)
Q Consensus 191 ~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~ 270 (409)
.++++||+|||||||.||||++||+++.+.+......+ ++.++|++++.+|++|.+|+..++.++..|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--
Confidence 47899999999999999999999999999998888888 789999999999999999998889999999999988642
Q ss_pred HHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceec
Q 015325 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350 (409)
Q Consensus 271 ~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~ 350 (409)
...++.|+++++|++.++|+++..|++.... ..++++||.+++||+++++++.+++++. ++++++.||+||+++.++
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 2346778999999999999999999987643 3468999999999999999999999874 899999999999988776
Q ss_pred ccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccC
Q 015325 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404 (409)
Q Consensus 351 ~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~ 404 (409)
... ......+.+|.+.||+++.+.+ .|||+++|+....|||
T Consensus 190 ~~~--~~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~~~g~~ 230 (358)
T 4gs5_A 190 LKA--LNGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVTNGQTV 230 (358)
T ss_dssp EEE--CSSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGGTTCCE
T ss_pred ccc--ccccccceeeccCCCeEEEecC-----------cCceEEecccccCcce
Confidence 532 2334567899999999998755 4999999998887776
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=1.8e-30 Score=248.80 Aligned_cols=203 Identities=24% Similarity=0.277 Sum_probs=169.3
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhh---ccCCCCCCCCEEEEeCch-hhHHhHHHHHHHHHhCCeEEE
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~v~ 264 (409)
..++++++++|||||||.||+|++||+++........ ..+ ++.++|++++..|+ +|..++...+.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 4568899999999999999999999999876654433 245 67899999999998 677777778899999999998
Q ss_pred ecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCC--CCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCc
Q 015325 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (409)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~--l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (409)
.+.++++.+++.|+++++|++.++|+++..|.+.......+ +++||.+++||+++++++.+++++.| ++++++.||+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 88889999999999999999999999999998754322222 47899999999999999999999999 9999999999
Q ss_pred ccccce-ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecC
Q 015325 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397 (409)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~ 397 (409)
||+++. ++. .... .....+.|.+++.++|+|+++|+++++|+.|||+|+|.
T Consensus 245 TE~~g~~~~~-~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~ 296 (437)
T 2y27_A 245 SEVMGPGVAS-ECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL 296 (437)
T ss_dssp TTTTEEEEEE-CCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES
T ss_pred hhhcCCeeEE-ecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC
Confidence 998543 332 1111 11126667799999999988899999999999999984
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=2.7e-30 Score=248.05 Aligned_cols=204 Identities=23% Similarity=0.257 Sum_probs=169.2
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc---cCCCCCCCCEEEEeCch-hhHHhHHHHHHHHHhCCeEEE
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~v~ 264 (409)
..++++++++|||||||.||+|++||+++......... .+ ++.++|++++..|+ +|..++...+.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 45688999999999999999999999998766544332 45 67899999999998 577777778899999999999
Q ss_pred ecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCC--CCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCc
Q 015325 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (409)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~--l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (409)
.+.++++.+++.|+++++|++.++|+++..|.+.......+ +++||.+++||+++++++.++|++.| ++++++.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 98889999999999999999999999999998754322222 47899999999999999999999999 9999999999
Q ss_pred ccccce-ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCc
Q 015325 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398 (409)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~ 398 (409)
||+++. +.. .... .....+.|.+++.++|+|+++|+++++|+.|||+|+|..
T Consensus 247 TE~~g~~~~~-~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t 299 (443)
T 2y4o_A 247 SEVMGPGVAC-ECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT 299 (443)
T ss_dssp TTTTEEEEEE-ECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS
T ss_pred hhhcCCeEEe-ccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC
Confidence 998543 332 1111 111256677899999999888999999999999999853
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.37 E-value=0.014 Score=56.42 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=48.9
Q ss_pred cceeeecCCCCCHHHHHHHHHhCCCCcee-cccCcccccceecccCCCCCCCCCCccccc-cCC-ceEEEecCCC---C-
Q 015325 309 LETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGRL-SAG-LEAKIVDPET---G- 381 (409)
Q Consensus 309 Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p-~~~-~~v~i~d~~~---g- 381 (409)
|..++.||- ..-..+++..+++.+++ ..|++||+ .+... ......+...+.. +|+ .-++.++.++ .
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~---~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~ 374 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGIN---LDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKND 374 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEEC---SCTTSCGGGCCEEECTTSSEEEEEECSTTCCSS
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeec---cCCCCCcccCceeecCCcEEEEEEeccccCCCc
Confidence 555666773 44445666666788888 89999995 22222 1111112223332 333 3345554221 1
Q ss_pred ----CCCCCCCcceEEEecCcccccc
Q 015325 382 ----DSLPPGKEGELSIRGPTIMKGI 403 (409)
Q Consensus 382 ----~~~~~g~~Gei~v~g~~v~~gY 403 (409)
..|..|+.+||+|+..+-.-.|
T Consensus 375 ~v~l~eVe~G~~YelViTt~~GL~RY 400 (581)
T 4eql_A 375 VVDLEDVKLGCTYEPVVTNFAGLYRM 400 (581)
T ss_dssp CEEGGGCCTTCEEEEEEECSSSCCSE
T ss_pred EeCHHHcCCCceEEEEEeeccceeeE
Confidence 4467999999999987533333
No 38
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=94.92 E-value=0.059 Score=52.03 Aligned_cols=30 Identities=37% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCC-CCcchhhhccHHHHH
Q 015325 190 CQSDVAAIMYSSGTT-GRVKGVMLTHRNLTA 219 (409)
Q Consensus 190 ~~~~~a~i~~TSGTT-G~pK~v~~s~~~l~~ 219 (409)
.++.+.++.-||||| |++|-|++|.+.+-.
T Consensus 96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 345567889999999 779999999887643
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=94.87 E-value=0.084 Score=51.25 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCC-CCcchhhhccHHHHH
Q 015325 190 CQSDVAAIMYSSGTT-GRVKGVMLTHRNLTA 219 (409)
Q Consensus 190 ~~~~~a~i~~TSGTT-G~pK~v~~s~~~l~~ 219 (409)
.++.+.++.-||||| |+||.|++|.+.+-.
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 456677899999999 789999999887643
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.81 E-value=0.88 Score=42.47 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=69.6
Q ss_pred ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC--chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (409)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~--~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (409)
..+|...+...+..++..+.. .|+.++|++...++-+. ..+...++++..|+..++++.. +.+.+.+.+++.++.+
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 185 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDI 185 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred EecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCE
Confidence 358999999888888888887 89999999998887543 2344567889999998887764 7888999999999999
Q ss_pred EEEcCchHHHH
Q 015325 146 AFATSSVVHKL 156 (409)
Q Consensus 146 ii~~~~~~~~~ 156 (409)
++........+
T Consensus 186 l~~~Ps~~~~l 196 (437)
T 2y27_A 186 IMVTPSYMLSI 196 (437)
T ss_dssp EEECHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 99887655443
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.39 E-value=1 Score=42.12 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=69.7
Q ss_pred ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC--chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (409)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~--~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (409)
..+|...+...+..++..+.. .|+.++|++...++-+. ..+...++++..|+..++++.. +.+.+.+.+++.++.+
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 187 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKI 187 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred EecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcE
Confidence 358999999888888888887 89999999998887543 2344567888999998887765 7888899999999999
Q ss_pred EEEcCchHHHH
Q 015325 146 AFATSSVVHKL 156 (409)
Q Consensus 146 ii~~~~~~~~~ 156 (409)
++........+
T Consensus 188 l~~~Ps~~~~l 198 (443)
T 2y4o_A 188 ILVTPSYMLNL 198 (443)
T ss_dssp EEECHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 99877655443
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.12 E-value=1.1 Score=41.78 Aligned_cols=87 Identities=17% Similarity=0.079 Sum_probs=70.2
Q ss_pred ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC--chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (409)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~--~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (409)
..+|.+.+...+..++..+.. .|+.++|++....+-+. ..+..+++++..|+..++.++. ..+.+...+++.++.+
T Consensus 104 v~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 181 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTA 181 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCE
T ss_pred EEECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCE
Confidence 458999999988888888887 89999999998887542 2344567889999998887755 6788899999999999
Q ss_pred EEEcCchHHHH
Q 015325 146 AFATSSVVHKL 156 (409)
Q Consensus 146 ii~~~~~~~~~ 156 (409)
++........+
T Consensus 182 ~~~~P~~~~~l 192 (436)
T 3qov_A 182 LHAIPSYAIRL 192 (436)
T ss_dssp EECCHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 99887665544
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=82.34 E-value=4.5 Score=36.50 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=62.8
Q ss_pred ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCc--hHHHHHHHHHhCCeEccCCCCCCHH-------------
Q 015325 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPANPVNTES------------- 132 (409)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~--~~~~~~A~~~~G~~~v~l~~~~~~~------------- 132 (409)
..+|...+...+..++..+.. .|+.++|++...++-+.. .+...++++..|+..++.+ .++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~ 185 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTAT 185 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHH
T ss_pred EEECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhh
Confidence 458999999888877777887 899999999998886333 2334555688998555433 3444
Q ss_pred ----------HHHHHHhhcCCeEEEEcCchHHHHh
Q 015325 133 ----------EISRQIQLSNPVIAFATSSVVHKLA 157 (409)
Q Consensus 133 ----------~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (409)
++.+.+++.++.+++........+.
T Consensus 186 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 186 VRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6666888899998888776665543
No 44
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=76.65 E-value=17 Score=34.60 Aligned_cols=98 Identities=9% Similarity=-0.067 Sum_probs=71.9
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
..++.++++.... | -.+|.+.+...+..+...+ .+..++|++...++-+.. .+..+++++..|+..+.++
T Consensus 34 ~~p~~~a~~~~~~---~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 34 NHSSKPCLINGAN---G----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAAN 105 (536)
T ss_dssp GSTTSEEEEETTT---C----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECC
T ss_pred cCCCceEEEECCC---C----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccC
Confidence 3467787764322 2 3478888876666555443 268899999998887643 3367899999999998886
Q ss_pred -CCCHHHHHHHHHHhcceeEeechHHHHH
Q 015325 267 -RFDLKMMLKAVEEFRVTHAAVTPPIVVA 294 (409)
Q Consensus 267 -~~~~~~~~~~i~~~~~t~l~~~p~~l~~ 294 (409)
...++.+...+++.++..++........
T Consensus 106 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 106 PFSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TTCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 4678999999999999999987654433
No 45
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=76.39 E-value=20 Score=34.20 Aligned_cols=104 Identities=8% Similarity=-0.010 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCCC-CCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 190 CQSDVAAIMYSSGT-TGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 190 ~~~~~a~i~~TSGT-TG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
.++.+|++....+. .+. .-.+|.+.+...+..+...+ .+..++|++...++-+..+ +..+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccC
Confidence 46778776543211 111 23578888876666655443 2688999999988876432 367899999999999886
Q ss_pred -CCCHHHHHHHHHHhcceeEeechHHHHHHH
Q 015325 267 -RFDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296 (409)
Q Consensus 267 -~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~ 296 (409)
....+.+...+++.+++.++..+.....+.
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 467899999999999999998877665543
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=75.27 E-value=16 Score=34.55 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=72.7
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
..++.+|++.- +-.+|++.+...+..+...+ .+..++|++...++-+.. .+..+++++..|+..+.++
T Consensus 18 ~~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 18 LFPDRTAFMVD---------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVN 87 (509)
T ss_dssp HSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECC
T ss_pred HCCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecC
Confidence 34677877641 23589998877666655544 267899999998887643 2367899999999999886
Q ss_pred -CCCHHHHHHHHHHhcceeEeechHHHHH
Q 015325 267 -RFDLKMMLKAVEEFRVTHAAVTPPIVVA 294 (409)
Q Consensus 267 -~~~~~~~~~~i~~~~~t~l~~~p~~l~~ 294 (409)
....+.+...+++.++..++..+.....
T Consensus 88 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 88 YRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 4688999999999999999998766554
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=74.88 E-value=16 Score=35.00 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=70.8
Q ss_pred CCcEEEeC---CC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH--HHHHHHHhCCeEccCCC
Q 015325 57 DTVALINS---VT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPANP 127 (409)
Q Consensus 57 ~~~a~~~~---~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~--~~~A~~~~G~~~v~l~~ 127 (409)
+.+|++.- .+ +..+|.+.+...+......+.. .++.++|++...++-...+-. .+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~- 268 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT- 268 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-
Confidence 67777642 11 2469999988777666554444 688899998888876544322 345666 998888776
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCchHHHHh
Q 015325 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (409)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (409)
..+.+.+...+++.++.+++........+.
T Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 269 KFDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 468889999999999999998877665553
No 48
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=72.78 E-value=42 Score=31.43 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=71.3
Q ss_pred CCCcEEEeC---CCC----ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCch-HHHHHHHHHhCCeEccCCC
Q 015325 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (409)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~-~~~~~A~~~~G~~~v~l~~ 127 (409)
|+.+|++.- .+| ..+|.+.+...+..+.. . +++.++|++...+|-...+ +..+++++..|+..+..+.
T Consensus 162 ~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 162 LDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---S-LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp TTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---H-TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---h-hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 677877642 112 46899988877665543 3 6889999998888765433 2336778889998887764
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCchHHHHh
Q 015325 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (409)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (409)
.+.+.+...+++.++.++.........+.
T Consensus 238 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 238 -FNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp -CCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 68899999999999999998877666554
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=72.12 E-value=39 Score=32.21 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=69.9
Q ss_pred CCCcEEEeC---CC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH---HHHHHHHhCCeEccC
Q 015325 56 DDTVALINS---VT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (409)
Q Consensus 56 p~~~a~~~~---~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~---~~~A~~~~G~~~v~l 125 (409)
++.+|++.- .+ +..+|.+.+...+...+. . +++.++|++...+|-...+-. .+++.+..|+..+..
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---I-CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---H-hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 677777632 11 246899988877666544 3 688999999998886655443 367888999888776
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCchHHHH
Q 015325 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (409)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (409)
+. .....+...+++.++.++.........+
T Consensus 266 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 295 (544)
T 3o83_A 266 PN-PEPLNCFSIIQRHQVNMASLVPSAVIMW 295 (544)
T ss_dssp SS-CCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCCEEEechHHHHHH
Confidence 64 5788888999999999999877654433
No 50
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=71.87 E-value=27 Score=33.30 Aligned_cols=100 Identities=7% Similarity=-0.093 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec-
Q 015325 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ- 266 (409)
Q Consensus 190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 266 (409)
.++.++++....+ ....+|.+.+...+..+...+ .+..++|++...++-+.. .+..+++++..|+..+.++
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEecCc
Confidence 4567776543211 123578888876665554443 167899999998887643 2367899999999999886
Q ss_pred CCCHHHHHHHHHHhcceeEeechHHHHHH
Q 015325 267 RFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295 (409)
Q Consensus 267 ~~~~~~~~~~i~~~~~t~l~~~p~~l~~l 295 (409)
....+.+...+++.++..++..+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 46789999999999999999988765544
No 51
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=70.81 E-value=38 Score=32.23 Aligned_cols=96 Identities=9% Similarity=0.066 Sum_probs=69.5
Q ss_pred CCCcEEEeC---CC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH---HHHHHHHhCCeEccC
Q 015325 56 DDTVALINS---VT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (409)
Q Consensus 56 p~~~a~~~~---~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~---~~~A~~~~G~~~v~l 125 (409)
|+.+|++.- .+ +..+|.+.+...+..... . +++.++|++...+|-...+-. .+++++..|+..+..
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---V-CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---H-HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---h-hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 677777632 11 246899988776655443 3 678899998888876654433 478889999988876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCchHHHH
Q 015325 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (409)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (409)
+. ...+.+...+++.++.+++........+
T Consensus 257 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 286 (539)
T 1mdb_A 257 PS-PSPDDAFPLIEREKVTITALVPPLAMVW 286 (539)
T ss_dssp SS-SSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 54 5788899999999999999887655444
No 52
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.31 E-value=31 Score=32.49 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec-
Q 015325 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ- 266 (409)
Q Consensus 190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 266 (409)
.++.+|++... + +..+|++.+...+..+...+ .+..++|++...++-+..+ +..+++++..|+..+.++
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 46777776432 1 23588888876666554443 1678899999988876443 367899999999999886
Q ss_pred CCCHHHHHHHHHHhcceeEee--chHHHHHH
Q 015325 267 RFDLKMMLKAVEEFRVTHAAV--TPPIVVAM 295 (409)
Q Consensus 267 ~~~~~~~~~~i~~~~~t~l~~--~p~~l~~l 295 (409)
...++.+...+++.+++.++. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 467899999999999999888 55544444
No 53
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=69.96 E-value=31 Score=32.59 Aligned_cols=97 Identities=14% Similarity=0.009 Sum_probs=71.3
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
..++.+|++.. | +...+|.+.+...+..+...+ .+..++|++...++-+.. .+..+++++..|+..+.++
T Consensus 28 ~~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~ 99 (517)
T 3r44_A 28 VSPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE-FCCLFYGAAKLGAVAVPIN 99 (517)
T ss_dssp HSTTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECC
T ss_pred hCCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecC
Confidence 34677877653 1 123588888876666555444 267899999999887643 2367899999999999886
Q ss_pred -CCCHHHHHHHHHHhcceeEeechHHHH
Q 015325 267 -RFDLKMMLKAVEEFRVTHAAVTPPIVV 293 (409)
Q Consensus 267 -~~~~~~~~~~i~~~~~t~l~~~p~~l~ 293 (409)
....+.+...+++.++..++.......
T Consensus 100 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (517)
T 3r44_A 100 TRLAAPEVSFILSDSGSKVVIYGAPSAP 127 (517)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred cccCHHHHHHHHHhcCceEEEECCchHH
Confidence 467899999999999999987765443
No 54
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=67.56 E-value=21 Score=33.31 Aligned_cols=105 Identities=12% Similarity=0.022 Sum_probs=74.5
Q ss_pred cCCCCEEEEEcCC--CCCCCcchhhhccHHHHHHHHHhhccCC--CCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEE
Q 015325 189 VCQSDVAAIMYSS--GTTGRVKGVMLTHRNLTAAVASSFASSP--KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV 264 (409)
Q Consensus 189 ~~~~~~a~i~~TS--GTTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~ 264 (409)
..++.+|++.... +.+| ....+|.+.+...+..+...+. +. ++|++...++-...+ +..+++++..|+..+.
T Consensus 36 ~~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 36 LQPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVP 111 (480)
T ss_dssp HSTTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEE
T ss_pred hCCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEe
Confidence 3567788765432 2223 2246899988777766655541 33 788888888876433 3678999999999998
Q ss_pred ecC----CCHHHHHHHHHHhcceeEeechHHHHHHHh
Q 015325 265 MQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297 (409)
Q Consensus 265 ~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~ 297 (409)
++. ...+.+...+++.++..++........+..
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 853 346789999999999999998877666544
No 55
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=65.93 E-value=37 Score=32.58 Aligned_cols=97 Identities=8% Similarity=-0.057 Sum_probs=70.9
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
..++.+|++.. .-.+|.+.+...+..+...+ .+..++|++...++-+.. .+..+++++..|+..+.++
T Consensus 51 ~~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 51 KRPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPID 120 (563)
T ss_dssp HCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred HCCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEeC
Confidence 34677776531 12478888876665554433 167889999988887643 2367899999999999886
Q ss_pred -CCCHHHHHHHHHHhcceeEeechHHHHHH
Q 015325 267 -RFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295 (409)
Q Consensus 267 -~~~~~~~~~~i~~~~~t~l~~~p~~l~~l 295 (409)
....+.+...+++.++..++..+.....+
T Consensus 121 ~~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 121 IEYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 46789999999999999999887655443
No 56
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=65.45 E-value=30 Score=33.05 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=66.2
Q ss_pred ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCch-HHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 015325 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (409)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~-~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 146 (409)
..+|.+.+...+......+.. .++.+++++...+|-...+ +...++.+..|+..+..+ ....+.+...+++.++.++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 285 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFG-NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSA 285 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEE
T ss_pred hhhhHHHHHHHHHHhhhhhcc-ccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEE
Confidence 468999887776665555544 6888999998888766433 344667788998888775 4678899999999999999
Q ss_pred EEcCchHHHHh
Q 015325 147 FATSSVVHKLA 157 (409)
Q Consensus 147 i~~~~~~~~~~ 157 (409)
+........+.
T Consensus 286 ~~~P~~~~~l~ 296 (550)
T 3rix_A 286 LLVPTLFSFFA 296 (550)
T ss_dssp EECHHHHHHHH
T ss_pred EeCcHHHHHHH
Confidence 98877665543
No 57
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=64.91 E-value=24 Score=33.50 Aligned_cols=96 Identities=10% Similarity=-0.089 Sum_probs=70.7
Q ss_pred CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec-
Q 015325 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ- 266 (409)
Q Consensus 190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 266 (409)
.++.+|++.. | ..+|++.+...+..+...+ .+..++|++...++-+..+ +..+++++..|+..+.++
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4566776532 1 3478888876666555443 1678899999988876443 357899999999998886
Q ss_pred CCCHHHHHHHHHHhcceeEeechHHHHHH
Q 015325 267 RFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295 (409)
Q Consensus 267 ~~~~~~~~~~i~~~~~t~l~~~p~~l~~l 295 (409)
...++.+...+++.++..++..+.....+
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 46789999999999999999887655443
No 58
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=64.71 E-value=36 Score=33.51 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc----cCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEe
Q 015325 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM 265 (409)
Q Consensus 190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 265 (409)
.++.+|++... ..+|. ...+|.+.+...+..+.. .. +..++|++...+|..-- .+..+++++..|+..+.+
T Consensus 95 ~pd~~Al~~~~-~~~~~--~~~~TY~eL~~~v~~lA~~L~~~~-Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPGQ--GYSITYKELLEEVCQVAQVLTYSM-GVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEEC-SSTTC--CEEEEHHHHHHHHHHHHHHHHHTS-CCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEc-CCCCc--eEEEEHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEee
Confidence 46778776542 21221 235788888766655443 34 67899999999998644 336889999999998888
Q ss_pred c-CCCHHHHHHHHHHhcceeEeechH
Q 015325 266 Q-RFDLKMMLKAVEEFRVTHAAVTPP 290 (409)
Q Consensus 266 ~-~~~~~~~~~~i~~~~~t~l~~~p~ 290 (409)
. .+.++.+...+++.++.+++....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 5 578999999999999999987653
No 59
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=63.67 E-value=36 Score=32.06 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=69.7
Q ss_pred CCCcEEEeC---CCC----ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCch-HHHHHHHHHhCCeEccCCC
Q 015325 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (409)
Q Consensus 56 p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~-~~~~~A~~~~G~~~v~l~~ 127 (409)
++.+|++.- .+| ..+|.+.+...+..... . .++.++|++...+|-+..+ +..+++++..|+..+.+++
T Consensus 143 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 143 GDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---D-FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp TTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---H-TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---h-cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 566776532 112 46899888776654443 3 6889999999988876543 3457888999999888776
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEcCchHHHH
Q 015325 128 V--NTESEISRQIQLSNPVIAFATSSVVHKL 156 (409)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (409)
. .....+...+++.++.+++........+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4678888999999999998887666544
No 60
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=63.49 E-value=34 Score=32.98 Aligned_cols=96 Identities=10% Similarity=0.052 Sum_probs=70.3
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
..++.+|++.... .|. ...+|.+.+...+..++..+ .+..++|++...++-..-+ +..+++++..|+..+.++
T Consensus 68 ~~pd~~Al~~~~~--~g~--~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 68 DSPEKLAMIWCDD--YGN--EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp HCTTCEEEEEEES--SSC--EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECC
T ss_pred hCCCCEEEEEEcC--CCC--EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCC
Confidence 3578888775432 121 24578888876665554443 2688999999998876442 357899999999999885
Q ss_pred -CCCHHHHHHHHHHhcceeEeech
Q 015325 267 -RFDLKMMLKAVEEFRVTHAAVTP 289 (409)
Q Consensus 267 -~~~~~~~~~~i~~~~~t~l~~~p 289 (409)
...++.+...+++.++..++..+
T Consensus 143 ~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 143 HMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TTCCHHHHHHHHHHHTCCEEEEES
T ss_pred ccCCHHHHHHHHHhcCCCEEEEec
Confidence 46889999999999999998754
No 61
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=61.55 E-value=45 Score=31.36 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCCcEEEe---CCCC----ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchH-HHHHHHHHhCCeEccCCC
Q 015325 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP-ILYFSLLSLGVIISPANP 127 (409)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~-~~~~A~~~~G~~~v~l~~ 127 (409)
++.+|++. +.+| ..+|.+.+...+..+.. . +++.++|++...++-+..+- ..+++++..|+..+.++.
T Consensus 142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---D-FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---H-STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---h-cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 56677653 1122 46899888776655543 3 67889999999888765443 347788999998887765
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEcCchHHHH
Q 015325 128 V--NTESEISRQIQLSNPVIAFATSSVVHKL 156 (409)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (409)
. .....+...+++.++.+++........+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4677888899999999998887666554
No 62
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=60.84 E-value=29 Score=33.43 Aligned_cols=102 Identities=8% Similarity=0.021 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--C-CCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--P-KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
.++.+|++.... .| ....+|.+.+...+..+...+ . +..++|++...++-+..+ +..+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 567787765421 12 124578888877666655543 1 578899999988876433 357899999999998886
Q ss_pred C-CCHHHHHHHHHHhcceeEeechHHHHHHH
Q 015325 267 R-FDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296 (409)
Q Consensus 267 ~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~ 296 (409)
. ..++.+...+++.++..++..+.....+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 4 67899999999999999998876655543
No 63
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=60.10 E-value=41 Score=27.61 Aligned_cols=91 Identities=10% Similarity=0.070 Sum_probs=52.5
Q ss_pred CEEEEeCc--hhhHHhH-HHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEee--c----hHH--HHHHHhCCCCC
Q 015325 235 AVMLFTMP--YFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAV--T----PPI--VVAMSKGGSTD 302 (409)
Q Consensus 235 d~~l~~~p--~~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~--~----p~~--l~~l~~~~~~~ 302 (409)
.+++...+ -.|..|. ......-..|..++... ...++.+.+.+.++++.++.+ + ++. +..+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 34444443 3566777 33344445666666653 467899999999999998877 2 221 22222221111
Q ss_pred CCCCCCcceeeecCCCCCHHHHHHH
Q 015325 303 GYDLSSLETVACGAAPLGKDTIMAF 327 (409)
Q Consensus 303 ~~~l~~Lr~v~~~G~~~~~~~~~~~ 327 (409)
... ..++ +++||.+++++..+++
T Consensus 173 ~~~-~~v~-v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 KLR-DSVK-CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp TCG-GGSE-EEEESSSCCHHHHHHH
T ss_pred CCC-CCCE-EEEECCCCCHHHHHHh
Confidence 110 1233 7889999998765543
No 64
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=59.68 E-value=50 Score=31.65 Aligned_cols=91 Identities=9% Similarity=-0.008 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec-
Q 015325 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ- 266 (409)
Q Consensus 190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 266 (409)
.++.+|++.. .-.+|.+.+...+..+...+ .+..++|++...++-+..+ +..+++++..|+..+.++
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 4677776541 12478888876666555443 2678999999988876443 368899999999999886
Q ss_pred CCCHHHHHHHHHHhcceeEeechH
Q 015325 267 RFDLKMMLKAVEEFRVTHAAVTPP 290 (409)
Q Consensus 267 ~~~~~~~~~~i~~~~~t~l~~~p~ 290 (409)
....+.+...+++.++..++....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRP 181 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTT
T ss_pred CChHHHHHHHHHhcCCCEEEecch
Confidence 467899999999999999987654
No 65
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=59.51 E-value=30 Score=35.83 Aligned_cols=96 Identities=13% Similarity=0.011 Sum_probs=71.6
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
..++.+|++...+| -.+|.+.+...+..+...+ .+..++|++...++-+.. .+..+++++..|+..+.++
T Consensus 73 ~~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 73 EFATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAAN 144 (979)
T ss_dssp GTTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEEC
T ss_pred hCCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeC
Confidence 35677887653222 3478888876666555443 268899999999887643 3367899999999999886
Q ss_pred -CCCHHHHHHHHHHhcceeEeechHHH
Q 015325 267 -RFDLKMMLKAVEEFRVTHAAVTPPIV 292 (409)
Q Consensus 267 -~~~~~~~~~~i~~~~~t~l~~~p~~l 292 (409)
...++.+...+++.++..++..+...
T Consensus 145 ~~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 145 PFFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TTSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 47889999999999999999876543
No 66
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=57.97 E-value=43 Score=32.12 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=68.7
Q ss_pred CCCcEEEeC---CC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH--HHHHHHHhCCeEccCC
Q 015325 56 DDTVALINS---VT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (409)
Q Consensus 56 p~~~a~~~~---~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~--~~~A~~~~G~~~v~l~ 126 (409)
|+.+|++.- .+ +..+|.+.+...+..... . +++.++|++...+|-...+-. .+++.+..|+..+..+
T Consensus 166 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 166 SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---S-FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp TTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---h-hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 677777642 11 246999998877766544 3 688999999998887765433 3678889999888876
Q ss_pred CCC---CHHHHHHHHhhcCCeEEEEcCchHHH
Q 015325 127 PVN---TESEISRQIQLSNPVIAFATSSVVHK 155 (409)
Q Consensus 127 ~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~ 155 (409)
+.. ....+...+++.++.++.........
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 273 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDY 273 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHH
Confidence 532 45677788899999988876654433
No 67
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=57.87 E-value=37 Score=31.95 Aligned_cols=79 Identities=6% Similarity=-0.037 Sum_probs=62.2
Q ss_pred hhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHHhcceeEee
Q 015325 211 MLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAV 287 (409)
Q Consensus 211 ~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~~ 287 (409)
.+|.+.+...+..+...+ .+..++|++...++-+.. .+..+++++..|+..+.++. ...+.+...+++.++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 478888876666555443 268899999998887643 23688999999999998864 67899999999999999988
Q ss_pred chH
Q 015325 288 TPP 290 (409)
Q Consensus 288 ~p~ 290 (409)
.+.
T Consensus 107 ~~~ 109 (503)
T 4fuq_A 107 DPS 109 (503)
T ss_dssp CGG
T ss_pred Cch
Confidence 764
No 68
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=57.31 E-value=1.2e+02 Score=29.33 Aligned_cols=96 Identities=8% Similarity=0.035 Sum_probs=68.8
Q ss_pred CCCcEEEeC---CC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH---HHHHHHHhCCeEccC
Q 015325 56 DDTVALINS---VT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (409)
Q Consensus 56 p~~~a~~~~---~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~---~~~A~~~~G~~~v~l 125 (409)
|+.+|++-- .+ +..+|.+.+...+..... . +++.+++++...++-...+-. .+++++..|+..+..
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~---~-~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE---I-CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---H-HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH---h-cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 577777632 11 246899888776655544 3 677899999998886654433 367888899888776
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCchHHHH
Q 015325 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (409)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (409)
+. .....+...+++.++.++.........+
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 64 5778888899999999998877654443
No 69
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=57.05 E-value=30 Score=30.72 Aligned_cols=92 Identities=11% Similarity=-0.016 Sum_probs=59.7
Q ss_pred CCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccC-CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (409)
Q Consensus 57 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g-v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~ 135 (409)
-++.+..++.+..-||++--. ...+.. ..+ .| +++|+.|.+....+-.-..+.+++...|..++.+-|........
T Consensus 35 ~~i~~K~E~~~ptGSfK~R~a-~~~i~~-a~~-~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 111 (334)
T 3tbh_A 35 AKVVLKMECENPMASVKDRLG-FAIYDK-AEK-EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111 (334)
T ss_dssp SEEEEEEGGGSTTSBTHHHHH-HHHHHH-HHH-TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CEEEEEeCCCCCccCcHHHHH-HHHHHH-HHH-cCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 456666664445557776422 223333 344 45 48888865555567777888888889998665554544445566
Q ss_pred HHHhhcCCeEEEEcCc
Q 015325 136 RQIQLSNPVIAFATSS 151 (409)
Q Consensus 136 ~~l~~~~~~~ii~~~~ 151 (409)
..++..++++++++..
T Consensus 112 ~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 112 CLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHCCCEEEEECCC
Confidence 7789999999999754
No 70
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=52.33 E-value=36 Score=33.34 Aligned_cols=96 Identities=13% Similarity=0.037 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec-
Q 015325 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ- 266 (409)
Q Consensus 190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~- 266 (409)
.++.+|++... ..+|. .-.+|.+.+...+..+...+ .+..++|++...+|..--+ ...+++++..|+..+.+.
T Consensus 89 ~pd~~Al~~~~-~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEEC-SSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEEc-CCCCc--eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 35777776432 22222 23578888876666655443 1678999999999886443 367899999999988885
Q ss_pred CCCHHHHHHHHHHhcceeEeech
Q 015325 267 RFDLKMMLKAVEEFRVTHAAVTP 289 (409)
Q Consensus 267 ~~~~~~~~~~i~~~~~t~l~~~p 289 (409)
.+.++.+...+++.++..++...
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 57899999999999999888754
No 71
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=51.82 E-value=38 Score=30.22 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=49.0
Q ss_pred eeeHHHHHHHH--HHHH-HHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCe-EccCCCCCCHHHHHHHHhhcCCe
Q 015325 69 RVSFSEFTRRT--NSLA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI-ISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 69 ~~Ty~el~~~~--~~la-~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
.+++.+..... -..| ..|.+..++++|++|+|....+.--..++..+...|+. ++..+..-..++....+++.+++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 46777654321 1222 23444258999999999987555444444444567884 44444444445555667888988
Q ss_pred EEEEc
Q 015325 145 IAFAT 149 (409)
Q Consensus 145 ~ii~~ 149 (409)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 77753
No 72
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=48.91 E-value=50 Score=29.42 Aligned_cols=93 Identities=11% Similarity=0.048 Sum_probs=64.5
Q ss_pred CCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHH
Q 015325 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR 136 (409)
Q Consensus 57 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~ 136 (409)
-++.+-.+.-+..-||++-- ..+.+.....+ --+++|.+..+....+-.-..+.++|.+.|..++.+=|.....+...
T Consensus 50 ~~IylK~E~lnptGSfK~Rg-A~~~i~~a~~~-g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~ 127 (344)
T 3vc3_A 50 AYVAVKQEMMQPTASIADRP-AYAMITDAEEK-NLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 127 (344)
T ss_dssp SEEEEEEGGGSTTSBTTHHH-HHHHHHHHHHT-TCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CEEEEEecCCCCCCCcHHHH-HHHHHHHHHHc-CCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHH
Confidence 35667766445566777522 23344444444 33677877667777788888889999999986666666556666777
Q ss_pred HHhhcCCeEEEEcCc
Q 015325 137 QIQLSNPVIAFATSS 151 (409)
Q Consensus 137 ~l~~~~~~~ii~~~~ 151 (409)
.++..++++++++..
T Consensus 128 ~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 128 TMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 899999999998653
No 73
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=46.63 E-value=42 Score=29.65 Aligned_cols=77 Identities=5% Similarity=0.023 Sum_probs=48.6
Q ss_pred eeeHHHHHHHH--HH-HHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325 69 RVSFSEFTRRT--NS-LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (409)
Q Consensus 69 ~~Ty~el~~~~--~~-la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (409)
.+++.+..... -. .-+.++. .++++|++|+|...-+.-..++++|....|+..+.++.+ .+ ...++++.+++.
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~-r~~~~~~~Ga~~ 211 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKV-SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QD-KLNLAKKIGADV 211 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HH-HHHHHHHTTCSE
T ss_pred CCCHHHHhhcccceeeEEeeecc-cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HH-HhhhhhhcCCeE
Confidence 46776643322 22 2234555 799999999999875566666666666667766655432 33 345677788887
Q ss_pred EEEc
Q 015325 146 AFAT 149 (409)
Q Consensus 146 ii~~ 149 (409)
++..
T Consensus 212 ~i~~ 215 (348)
T 4eez_A 212 TINS 215 (348)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7654
No 74
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=46.58 E-value=53 Score=30.92 Aligned_cols=78 Identities=10% Similarity=-0.120 Sum_probs=58.9
Q ss_pred hhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEee
Q 015325 211 MLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAV 287 (409)
Q Consensus 211 ~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~ 287 (409)
.+|.+.+...+..+...+ .+..++|++...++-... .+..+++++..|+..+.++ ...++.+...+++.++..++.
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 378888876666555443 157788888887776543 2367899999999988885 468899999999999998876
Q ss_pred ch
Q 015325 288 TP 289 (409)
Q Consensus 288 ~p 289 (409)
..
T Consensus 108 ~~ 109 (521)
T 3l8c_A 108 IE 109 (521)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 75
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=45.62 E-value=54 Score=30.29 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=57.3
Q ss_pred CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCC-CCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHH
Q 015325 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR 136 (409)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv-~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~ 136 (409)
++.+-.++.+..-||++-.. ...+.. ..+ .|+ ++|....+....+-.-..+.+++.+.|..++.+=|.........
T Consensus 139 ~I~lK~E~lnptGSfKdRgA-~~~i~~-A~~-~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~ 215 (430)
T 4aec_A 139 NIAAKLEIMEPCCSVKDRIG-YSMVTD-AEQ-KGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRV 215 (430)
T ss_dssp EEEEEEGGGSTTSBTTHHHH-HHHHHH-HHH-TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHH-HHHHHH-HHH-cCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHH
Confidence 55666654344446665321 222233 334 464 67755555555677778888889999986665555545556677
Q ss_pred HHhhcCCeEEEEcC
Q 015325 137 QIQLSNPVIAFATS 150 (409)
Q Consensus 137 ~l~~~~~~~ii~~~ 150 (409)
.++..++++++++.
T Consensus 216 ~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 216 LLKAFGAELVLTDP 229 (430)
T ss_dssp HHHHTTCEEEEECG
T ss_pred HHHHCCCEEEEECC
Confidence 88999999999974
No 76
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=45.62 E-value=69 Score=30.53 Aligned_cols=84 Identities=7% Similarity=-0.086 Sum_probs=63.0
Q ss_pred hhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC-CC-------HHHHHHHHHH
Q 015325 210 VMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FD-------LKMMLKAVEE 279 (409)
Q Consensus 210 v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~-------~~~~~~~i~~ 279 (409)
-.+|.+.+...+..+...+ .+..++|++...++-+..+ +..+++++..|+..+.++. .. .+.+...+++
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 3578888876666655443 1678999999998876432 3678999999999998853 33 5788889999
Q ss_pred hcceeEeechHHHHH
Q 015325 280 FRVTHAAVTPPIVVA 294 (409)
Q Consensus 280 ~~~t~l~~~p~~l~~ 294 (409)
.++..++........
T Consensus 127 ~~~~~ii~~~~~~~~ 141 (576)
T 3gqw_A 127 CQPAAIITGDEWLPL 141 (576)
T ss_dssp HCCSEEEECGGGHHH
T ss_pred cCCCEEEecHHHHHH
Confidence 999999887765443
No 77
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=42.62 E-value=47 Score=29.01 Aligned_cols=77 Identities=6% Similarity=0.028 Sum_probs=48.7
Q ss_pred ceeeHHHHHHHHHH---HHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCe
Q 015325 68 LRVSFSEFTRRTNS---LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 68 ~~~Ty~el~~~~~~---la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
..+++.+....... .-+.|.. .++++|++|+|....+.--..+...+...|+..+.+. +.++ ...+++.+++
T Consensus 124 ~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 124 EKLSFLQAASLPTAGLTALQALNQ-AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TTSCHHHHHHSHHHHHHHHHHHHH-TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHh-cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 34677775443221 2234555 8999999999997566555555555567798766553 3444 5567778887
Q ss_pred EEEEc
Q 015325 145 IAFAT 149 (409)
Q Consensus 145 ~ii~~ 149 (409)
.++..
T Consensus 199 ~~i~~ 203 (321)
T 3tqh_A 199 QCINY 203 (321)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 76643
No 78
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=40.31 E-value=1e+02 Score=28.85 Aligned_cols=76 Identities=13% Similarity=-0.033 Sum_probs=58.8
Q ss_pred hhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEeech
Q 015325 211 MLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTP 289 (409)
Q Consensus 211 ~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p 289 (409)
.+|.+.+...+..+...+ ...+++...++-+.. .+..+++++..|+..+.++ ....+.+...+++.++..++..+
T Consensus 48 ~~Ty~eL~~~~~~~A~~L---~~~~~V~i~~~~~~~-~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 48 SLTYAELAAAAGATAGRI---GGAGRVAVWATPAME-TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEHHHHHHHHHHHHTTC---C---CEEEECCSSHH-HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeHHHHHHHHHHHHhhc---cCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 589999999888888876 246777777776533 2367899999999999886 46789999999999999998865
Q ss_pred H
Q 015325 290 P 290 (409)
Q Consensus 290 ~ 290 (409)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 3
No 79
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=36.50 E-value=74 Score=28.52 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=39.6
Q ss_pred HHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCC-----CCCHHHHHHHHhhcC--CeEEEE
Q 015325 84 SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP-----VNTESEISRQIQLSN--PVIAFA 148 (409)
Q Consensus 84 ~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~ii~ 148 (409)
..|.. +++++||.|++-.+... ....++...|+.++.++. ..+.+.+...+..-+ +++|+.
T Consensus 68 ~al~~-l~~~~Gd~Vi~~~~~~~---~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 68 AAIQL-KKRKKGKYALMPSFTFP---ATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHH-HSCTTCCEEEEESSSCT---HHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHH-cCCCCcCEEEECCCCcH---HHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 33555 67899999887665443 344566788987665543 247888888774334 666664
No 80
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=36.31 E-value=1.1e+02 Score=29.05 Aligned_cols=98 Identities=12% Similarity=-0.033 Sum_probs=66.6
Q ss_pred cCCCCEEEEEcCCCCCCCcc--hhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEE
Q 015325 189 VCQSDVAAIMYSSGTTGRVK--GVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV 264 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK--~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~ 264 (409)
..++.+|++... +..+..+ .-.+|++.+...+..+...+ .+. ++|++...++-+..+ +..+++++..|+..+.
T Consensus 32 ~~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 32 THPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVP 108 (562)
T ss_dssp HCTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEE
T ss_pred HCCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEe
Confidence 356777766432 2222221 23578888876666555443 145 689998888876443 3578999999999998
Q ss_pred ec-CCCHHHHHHHHHHhcceeEeech
Q 015325 265 MQ-RFDLKMMLKAVEEFRVTHAAVTP 289 (409)
Q Consensus 265 ~~-~~~~~~~~~~i~~~~~t~l~~~p 289 (409)
++ ....+.+...+++.++..++...
T Consensus 109 l~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 109 IEAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred cCCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 86 46789999999999999877653
No 81
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=34.54 E-value=1.1e+02 Score=26.65 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=55.8
Q ss_pred CCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccC-CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (409)
Q Consensus 57 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g-v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~ 135 (409)
.++.+..+..+..-||++--.. ..+.. +.+ .| +++|+...+....+-.-..+.+++.+.|..++.+-|........
T Consensus 30 ~~v~~K~E~~~ptGSfK~R~a~-~~l~~-a~~-~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 106 (322)
T 1z7w_A 30 GRVAAKLEMMEPCSSVKDRIGF-SMISD-AEK-KGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERR 106 (322)
T ss_dssp SEEEEEEGGGSTTSBTHHHHHH-HHHHH-HHH-TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred ceEEEEecccCCCCchHHHHHH-HHHHH-HHH-cCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence 3566656543445566664222 22333 334 45 45664344445566677777888889998665544443445556
Q ss_pred HHHhhcCCeEEEEcCc
Q 015325 136 RQIQLSNPVIAFATSS 151 (409)
Q Consensus 136 ~~l~~~~~~~ii~~~~ 151 (409)
..++..++++++++.+
T Consensus 107 ~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 107 IILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEeCCC
Confidence 7788999999998753
No 82
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=34.32 E-value=87 Score=27.82 Aligned_cols=82 Identities=7% Similarity=0.058 Sum_probs=55.6
Q ss_pred ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCch-HHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 015325 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (409)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~-~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 146 (409)
..+|.+.+...+..++. . +++.++|++...+|-...+ +..++..+..|+..+..++... ....+++.++.++
T Consensus 55 V~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~ 127 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGK---A-LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFV 127 (358)
T ss_dssp EEEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEE
T ss_pred EEEeHHHHHHHHHHHHH---H-hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEE
Confidence 46999998876655544 3 6889999999888765432 3345566778887777665432 2345778888888
Q ss_pred EEcCchHHHH
Q 015325 147 FATSSVVHKL 156 (409)
Q Consensus 147 i~~~~~~~~~ 156 (409)
.........+
T Consensus 128 ~~~P~~l~~l 137 (358)
T 4gs5_A 128 AMVPMQLQSI 137 (358)
T ss_dssp EECHHHHHHH
T ss_pred EcChHHHHHh
Confidence 8776555444
No 83
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=34.26 E-value=1.5e+02 Score=25.76 Aligned_cols=61 Identities=11% Similarity=0.039 Sum_probs=40.7
Q ss_pred hHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 015325 86 LQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFAT 149 (409)
Q Consensus 86 L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 149 (409)
+.+..++++|++|+|....+.--.++...+...|+..+.+.. +.+++. .+++.+++.++..
T Consensus 140 l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 140 TNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred HHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 444248999999999986565555555555678987666654 344444 5677888877654
No 84
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=34.10 E-value=96 Score=27.21 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=46.8
Q ss_pred ceeeHHHHHHHH---HHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCe
Q 015325 68 LRVSFSEFTRRT---NSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 68 ~~~Ty~el~~~~---~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
..+++.+..... ...-+.|.. .++++|++|+|...-..-..++ ..+...|+..+.+.. +.+. ...+++.+++
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~a~-qla~~~Ga~Vi~~~~--~~~~-~~~~~~lGa~ 212 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKV-TDTRPGQWVVISGIGGLGHVAV-QYARAMGLRVAAVDI--DDAK-LNLARRLGAE 212 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHT-TTCCTTSEEEEECCSTTHHHHH-HHHHHTTCEEEEEES--CHHH-HHHHHHTTCS
T ss_pred CCCCHHHhhcccchhHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHH-HHHHHCCCeEEEEeC--CHHH-HHHHHHcCCC
Confidence 356777754221 112344555 7999999999987644444444 444567887666543 3334 3456778888
Q ss_pred EEEEc
Q 015325 145 IAFAT 149 (409)
Q Consensus 145 ~ii~~ 149 (409)
.++..
T Consensus 213 ~~i~~ 217 (340)
T 3s2e_A 213 VAVNA 217 (340)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77654
No 85
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=33.23 E-value=77 Score=20.99 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=31.4
Q ss_pred ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC
Q 015325 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (409)
Q Consensus 68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~ 120 (409)
..+.+.++.+ .+.+ .++.+++.|.+++..+.....+...+...|.
T Consensus 22 ~~ip~~~l~~-------~~~~-l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKE-------RIAT-AVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHH-------HHHH-HCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHH-------HHHH-hCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 4566666643 3455 6677888999999888776666666777775
No 86
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=33.22 E-value=1.2e+02 Score=29.51 Aligned_cols=90 Identities=4% Similarity=-0.193 Sum_probs=66.4
Q ss_pred cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (409)
Q Consensus 189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 266 (409)
..++.+|++.. . -.+|++.+...+..+...+ .+..++|++...++-+..+ +..+++++..|+..+.++
T Consensus 39 ~~Pd~~Av~~~-~--------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vva~lailkaGa~~vpld 108 (620)
T 4dg8_A 39 LHPHREAIRDR-F--------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRES-ITCLLAILLSGHHYLYID 108 (620)
T ss_dssp HCTTSEEEEET-T--------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHH-HHHHHHHHHTTCEEEECC
T ss_pred hCCCCeEEEcC-C--------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeC
Confidence 35677876531 1 2478888876666655544 1578899998888876432 367899999999999886
Q ss_pred C-CCHHHHHHHHHHhcceeEeec
Q 015325 267 R-FDLKMMLKAVEEFRVTHAAVT 288 (409)
Q Consensus 267 ~-~~~~~~~~~i~~~~~t~l~~~ 288 (409)
. ...+.+...+++.++..+...
T Consensus 109 ~~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 109 LKQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TTSCHHHHHHHHHHHTEEEEEEC
T ss_pred ccChHHHHHHHHHhCCCcEEEec
Confidence 4 677889999999999988744
No 87
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=32.25 E-value=66 Score=28.64 Aligned_cols=81 Identities=9% Similarity=-0.095 Sum_probs=46.7
Q ss_pred eeeHHHHHHHH--HHHH-HHhHhccCCCCC-CEEEEEcCCCCchHHHHHHHHHhCCeEccCCC-CCCHHHHHHHHhhcCC
Q 015325 69 RVSFSEFTRRT--NSLA-SYLQNVTRLSKN-DTAFVLSTNSIEIPILYFSLLSLGVIISPANP-VNTESEISRQIQLSNP 143 (409)
Q Consensus 69 ~~Ty~el~~~~--~~la-~~L~~~~gv~~g-~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~-~~~~~~l~~~l~~~~~ 143 (409)
.+++.+..... -..| +.|.+..++++| ++|+|....+.--..+...+...|+..+.+.. ....++....+++.++
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA 217 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCC
Confidence 57887754321 2223 334441389999 99999987554444444444567886555532 2222334445577888
Q ss_pred eEEEEc
Q 015325 144 VIAFAT 149 (409)
Q Consensus 144 ~~ii~~ 149 (409)
+.++..
T Consensus 218 ~~vi~~ 223 (364)
T 1gu7_A 218 TQVITE 223 (364)
T ss_dssp SEEEEH
T ss_pred eEEEec
Confidence 877754
No 88
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=31.99 E-value=1.4e+02 Score=25.88 Aligned_cols=90 Identities=9% Similarity=-0.021 Sum_probs=54.6
Q ss_pred CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCC-CCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHH
Q 015325 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR 136 (409)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv-~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~ 136 (409)
++.+..+.-+..-||++--.. ..+.. +.+ .|. ++|+.|+. ...+-.-..+.+++.+.|..++.+-|.........
T Consensus 32 ~i~~K~E~~~ptgSfK~R~a~-~~l~~-a~~-~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 107 (313)
T 2q3b_A 32 DIVAKLEFFNPANSVKDRIGV-AMLQA-AEQ-AGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRM 107 (313)
T ss_dssp EEEEEEGGGSTTSBTHHHHHH-HHHHH-HHH-TTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred EEEEEehhcCCCCcHHHHHHH-HHHHH-HHH-cCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 455655533445677764322 22333 344 453 66666655 44566666677788899986655444434445566
Q ss_pred HHhhcCCeEEEEcCc
Q 015325 137 QIQLSNPVIAFATSS 151 (409)
Q Consensus 137 ~l~~~~~~~ii~~~~ 151 (409)
.++..++++++++..
T Consensus 108 ~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 108 LLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEeCCC
Confidence 788999999998763
No 89
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=31.37 E-value=1e+02 Score=27.21 Aligned_cols=75 Identities=8% Similarity=-0.052 Sum_probs=45.4
Q ss_pred ceeeHHHHHHHH---HHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCe
Q 015325 68 LRVSFSEFTRRT---NSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 68 ~~~Ty~el~~~~---~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
..+++.+..... ...-+.|.+ .++++|++|+|... +.--..+...+...|+..+.+..+-. . ...+++.+++
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~--~-~~~~~~lGa~ 222 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKF-SKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEH--K-KQDALSMGVK 222 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSST--T-HHHHHHTTCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHH--H-HHHHHhcCCC
Confidence 356777754221 111244666 79999999999875 54444444444567887666554432 2 2345678888
Q ss_pred EEE
Q 015325 145 IAF 147 (409)
Q Consensus 145 ~ii 147 (409)
.++
T Consensus 223 ~v~ 225 (348)
T 3two_A 223 HFY 225 (348)
T ss_dssp EEE
T ss_pred eec
Confidence 777
No 90
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=31.30 E-value=1.3e+02 Score=26.47 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCCCc------hHHH-HHHHHHhCCeEccCCCC------------CCHHHHHHHHhhcCCeEEEEcC
Q 015325 91 RLSKNDTAFVLSTNSIE------IPIL-YFSLLSLGVIISPANPV------------NTESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 91 gv~~g~~V~i~~~~~~~------~~~~-~~A~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~ii~~~ 150 (409)
-+++||+|+|+.|.+.- -+-. .--+-..|..++.-+.- ...+++.+++.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 46889999999887531 1111 11223456655543321 2455677788888899999864
No 91
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=30.94 E-value=1.8e+02 Score=25.87 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=38.2
Q ss_pred cCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCC----CCHHHHHHHHhhc--CCeEEEEc
Q 015325 90 TRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV----NTESEISRQIQLS--NPVIAFAT 149 (409)
Q Consensus 90 ~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~ 149 (409)
+++++||.|++..+....... ++...|+.++.++.+ .+.+++...++.. ++++|+..
T Consensus 67 l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 67 AGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred cCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 456889998888776655543 345578876665542 4678888888764 56666654
No 92
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=30.30 E-value=1.1e+02 Score=26.72 Aligned_cols=63 Identities=8% Similarity=-0.117 Sum_probs=41.8
Q ss_pred HHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEE
Q 015325 84 SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFA 148 (409)
Q Consensus 84 ~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 148 (409)
+.|.+..++++|++|+|....+.--..+...+...|+..+.+.. +.+++..+.++.+++.++.
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG--GAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEE
Confidence 34423378999999999988665555555555678986665543 4555555547778776654
No 93
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=30.23 E-value=1.4e+02 Score=26.36 Aligned_cols=91 Identities=8% Similarity=-0.074 Sum_probs=55.5
Q ss_pred CCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCC-CCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (409)
Q Consensus 57 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv-~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~ 135 (409)
.++.+..+..+..-||++.-.. ..+.. +.+ .|. ++|+.|+... .+-.-..+.+++...|..++.+-|........
T Consensus 42 ~~v~~K~E~~~ptGSfKdR~a~-~~l~~-a~~-~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 117 (343)
T 2pqm_A 42 TRILVKLEYFNPMSSVKDRVGF-NIVYQ-AIK-DGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQ 117 (343)
T ss_dssp CEEEEEEGGGSTTSBTHHHHHH-HHHHH-HHH-HTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHH
T ss_pred cEEEEEeccCCCCCChHHHHHH-HHHHH-HHH-cCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 3566656644556677764322 22333 333 353 6777665554 36666667777888998555544443445556
Q ss_pred HHHhhcCCeEEEEcCc
Q 015325 136 RQIQLSNPVIAFATSS 151 (409)
Q Consensus 136 ~~l~~~~~~~ii~~~~ 151 (409)
..++..++++++++..
T Consensus 118 ~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 118 MIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHCCCEEEEECCC
Confidence 6788899999998763
No 94
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=29.75 E-value=1.6e+02 Score=26.44 Aligned_cols=88 Identities=10% Similarity=-0.052 Sum_probs=51.6
Q ss_pred CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHH
Q 015325 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137 (409)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~ 137 (409)
++.+..+.-+..-||++.-.. ..+.. +.+ .| ++.|+.. ..+-.-..+.+++.+.|..++.+-|..........
T Consensus 62 ~i~~K~E~~~ptGSfKdRga~-~~l~~-a~~-~g---~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 134 (372)
T 1p5j_A 62 SVYLKMDSAQPSGSFKIRGIG-HFCKR-WAK-QG---CAHFVCS-SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIER 134 (372)
T ss_dssp CEEEECGGGSGGGBTTHHHHH-HHHHH-HHH-TT---CCEEEEC-CSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCCCChHHHHHH-HHHHH-HHH-cC---CCEEEEe-CCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 466655543445566654321 22222 233 23 3444443 34666666777888999866554444445566677
Q ss_pred HhhcCCeEEEEcCch
Q 015325 138 IQLSNPVIAFATSSV 152 (409)
Q Consensus 138 l~~~~~~~ii~~~~~ 152 (409)
++..++++++++...
T Consensus 135 ~~~~GA~V~~~~~~~ 149 (372)
T 1p5j_A 135 LKNEGATCKVVGELL 149 (372)
T ss_dssp HHHTTCEEEECCSCH
T ss_pred HHhcCCEEEEECCCH
Confidence 889999999988643
No 95
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=29.21 E-value=1.7e+02 Score=25.57 Aligned_cols=74 Identities=8% Similarity=0.096 Sum_probs=43.8
Q ss_pred eeeHHHHHHH---HHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325 69 RVSFSEFTRR---TNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (409)
Q Consensus 69 ~~Ty~el~~~---~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (409)
.+++.+.... ....-+.|.. .++++|++|+|....++-..++.+| ...|+..+.+.. +.+.+. .+++.+++.
T Consensus 137 ~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~ 211 (339)
T 1rjw_A 137 NLSFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDI--GDEKLE-LAKELGADL 211 (339)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECS--CHHHHH-HHHHTTCSE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeC--CHHHHH-HHHHCCCCE
Confidence 4677664321 1112244566 6899999999998855555555444 467886665554 344443 445677765
Q ss_pred EE
Q 015325 146 AF 147 (409)
Q Consensus 146 ii 147 (409)
++
T Consensus 212 ~~ 213 (339)
T 1rjw_A 212 VV 213 (339)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 96
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=29.19 E-value=90 Score=27.91 Aligned_cols=60 Identities=7% Similarity=-0.036 Sum_probs=38.6
Q ss_pred HHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC-eEccCCCCCCHHHHHHHHhhcCCeEEEE
Q 015325 84 SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV-IISPANPVNTESEISRQIQLSNPVIAFA 148 (409)
Q Consensus 84 ~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 148 (409)
+.+.. .++++|++|+|... +.--..+...+...|+ ..+.++.+ .+ ...++++.+++.++.
T Consensus 173 ~~l~~-~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~--~~-~~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 173 HGVDL-SGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQ--AT-KRRLAEEVGATATVD 233 (370)
T ss_dssp HHHHH-HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC--HH-HHHHHHHHTCSEEEC
T ss_pred HHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC--HH-HHHHHHHcCCCEEEC
Confidence 34555 79999999999986 5544444455557888 55555432 33 344567778776654
No 97
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=29.15 E-value=74 Score=28.18 Aligned_cols=77 Identities=8% Similarity=-0.096 Sum_probs=46.6
Q ss_pred ceeeHHHHHHH--H-HHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC-eEccCCCCCCHHHHHHHHhhcCC
Q 015325 68 LRVSFSEFTRR--T-NSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV-IISPANPVNTESEISRQIQLSNP 143 (409)
Q Consensus 68 ~~~Ty~el~~~--~-~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~ 143 (409)
..+++.+.... . ....+.+.. .++++|++|+|+.. +.--..+...+...|+ ..+.++.+ . +...++++.++
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~-~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~--~-~~~~~~~~lGa 212 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAEL-ANIKLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSR--K-HCCDIALEYGA 212 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHH-TTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCC--H-HHHHHHHHHTC
T ss_pred CCCCHHHHhhccchhHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCC--H-HHHHHHHHhCC
Confidence 35677765422 1 112234555 89999999999975 5444444445566787 45555542 3 33456677888
Q ss_pred eEEEEc
Q 015325 144 VIAFAT 149 (409)
Q Consensus 144 ~~ii~~ 149 (409)
+.++..
T Consensus 213 ~~vi~~ 218 (352)
T 3fpc_A 213 TDIINY 218 (352)
T ss_dssp CEEECG
T ss_pred ceEEcC
Confidence 877753
No 98
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=29.07 E-value=1.4e+02 Score=25.77 Aligned_cols=91 Identities=11% Similarity=-0.016 Sum_probs=54.5
Q ss_pred CCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCC-CCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (409)
Q Consensus 57 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv-~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~ 135 (409)
.++.+..++.+..-||++.-.. ..+.. +.+ .|. ++|+.|+. ...+-.-..+.+++...|..++.+-|........
T Consensus 29 ~~i~~K~E~~~ptgSfK~R~a~-~~l~~-a~~-~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~ 104 (308)
T 2egu_A 29 ADVYLKLEFMNPGSSVKDRIAL-AMIEA-AEK-AGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERR 104 (308)
T ss_dssp CEEEEEEGGGSTTSBTHHHHHH-HHHHH-HHH-TTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHH
T ss_pred CEEEEEecccCCCCChHHHHHH-HHHHH-HHH-cCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 3566655544445677654332 22333 333 353 56665554 4455566667778888998665544433344555
Q ss_pred HHHhhcCCeEEEEcCc
Q 015325 136 RQIQLSNPVIAFATSS 151 (409)
Q Consensus 136 ~~l~~~~~~~ii~~~~ 151 (409)
..++..++++++++..
T Consensus 105 ~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 105 NLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEECCC
Confidence 6778999999998764
No 99
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=28.76 E-value=77 Score=27.95 Aligned_cols=77 Identities=8% Similarity=-0.035 Sum_probs=46.3
Q ss_pred eeHHHHHHHHH---HHHHHhHhcc--CCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCe
Q 015325 70 VSFSEFTRRTN---SLASYLQNVT--RLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 70 ~Ty~el~~~~~---~la~~L~~~~--gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
+++.+...... ..-+.|.+ . ++++|++|+|...-..-..++++|-..-|+..+.++. +.+ ...++++.+++
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~-~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~-~~~~~~~lGa~ 218 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISR-VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDD-RLALAREVGAD 218 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHT-TGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHH-HHHHHHHTTCS
T ss_pred CCHHHhhhhhhhHHHHHHHHHH-hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHH-HHHHHHHcCCC
Confidence 77777543321 12233444 4 7899999999986444555555555443666665543 333 34466788888
Q ss_pred EEEEcC
Q 015325 145 IAFATS 150 (409)
Q Consensus 145 ~ii~~~ 150 (409)
.++...
T Consensus 219 ~~i~~~ 224 (345)
T 3jv7_A 219 AAVKSG 224 (345)
T ss_dssp EEEECS
T ss_pred EEEcCC
Confidence 877654
No 100
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=28.20 E-value=1.4e+02 Score=26.18 Aligned_cols=78 Identities=12% Similarity=0.009 Sum_probs=45.3
Q ss_pred ceeeHHHHHH---HHHHHHHHhHhccCCCCCCEEEEEcCCC-CchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCC
Q 015325 68 LRVSFSEFTR---RTNSLASYLQNVTRLSKNDTAFVLSTNS-IEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNP 143 (409)
Q Consensus 68 ~~~Ty~el~~---~~~~la~~L~~~~gv~~g~~V~i~~~~~-~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 143 (409)
..+++.+... ..-.....+.+..++++|++|+|....+ +-..++.+ +...|+..+.+..+.. .+ ..+++.++
T Consensus 115 ~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~-a~~~Ga~Vi~~~~~~~--~~-~~~~~lga 190 (340)
T 3gms_A 115 DSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQL-SQILNFRLIAVTRNNK--HT-EELLRLGA 190 (340)
T ss_dssp TTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHH-HHHHTCEEEEEESSST--TH-HHHHHHTC
T ss_pred CCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHH-HHHcCCEEEEEeCCHH--HH-HHHHhCCC
Confidence 3567777542 1222233343337999999999998774 44444444 4567887666654322 22 23455677
Q ss_pred eEEEEc
Q 015325 144 VIAFAT 149 (409)
Q Consensus 144 ~~ii~~ 149 (409)
+.++..
T Consensus 191 ~~~~~~ 196 (340)
T 3gms_A 191 AYVIDT 196 (340)
T ss_dssp SEEEET
T ss_pred cEEEeC
Confidence 766643
No 101
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=27.96 E-value=1.5e+02 Score=25.93 Aligned_cols=57 Identities=7% Similarity=-0.029 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCC----CCHHHHHHHHhhcCCeEEEEc
Q 015325 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV----NTESEISRQIQLSNPVIAFAT 149 (409)
Q Consensus 92 v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~ 149 (409)
.++||.|++..+....+.....++...|+.++.++.+ .+.+++...++. ++++++..
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 3578888776554443333344445678766655542 466777777754 56666654
No 102
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=27.93 E-value=1.5e+02 Score=26.09 Aligned_cols=79 Identities=5% Similarity=-0.042 Sum_probs=48.2
Q ss_pred ceeeHHHHHHHHHH---HHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCe
Q 015325 68 LRVSFSEFTRRTNS---LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 68 ~~~Ty~el~~~~~~---la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
..+++.+....... ....|.+..++++|++|+|....+.--..+...+...|+..+.+.. +.+.+ ..+++.+++
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~ 214 (353)
T 4dup_A 138 KGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG--STGKC-EACERLGAK 214 (353)
T ss_dssp TTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC--CHHHH-HHHHhcCCC
Confidence 34677776433222 2233433378999999999966666555555666678987666553 33443 445667777
Q ss_pred EEEEc
Q 015325 145 IAFAT 149 (409)
Q Consensus 145 ~ii~~ 149 (409)
.++..
T Consensus 215 ~~~~~ 219 (353)
T 4dup_A 215 RGINY 219 (353)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 66643
No 103
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=27.51 E-value=45 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.9
Q ss_pred HHHHHHhHhccCCCCCCEEEEEcC
Q 015325 80 NSLASYLQNVTRLSKNDTAFVLST 103 (409)
Q Consensus 80 ~~la~~L~~~~gv~~g~~V~i~~~ 103 (409)
..+.+.|++ +||++||.|.|...
T Consensus 18 ~~l~~~L~~-LGi~~Gd~llVHsS 40 (268)
T 3ijw_A 18 KTITNDLRK-LGLKKGMTVIVHSS 40 (268)
T ss_dssp HHHHHHHHH-HTCCTTCEEEEEEC
T ss_pred HHHHHHHHH-cCCCCCCEEEEEec
Confidence 456778998 99999999999875
No 104
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=27.31 E-value=1.5e+02 Score=26.08 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEcCCCCch------HHHHHH-HHHhCCeEccCCC------------CCCHHHHHHHHhhcCCeEEEEcC
Q 015325 91 RLSKNDTAFVLSTNSIEI------PILYFS-LLSLGVIISPANP------------VNTESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 91 gv~~g~~V~i~~~~~~~~------~~~~~A-~~~~G~~~v~l~~------------~~~~~~l~~~l~~~~~~~ii~~~ 150 (409)
-+++||+|+|+.|.+.-- +-.-.. +-..|..++.-+. ....+++.+++.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 467889999988877532 111122 2235666554332 12455677777778889999864
No 105
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=26.94 E-value=2.1e+02 Score=24.60 Aligned_cols=89 Identities=11% Similarity=0.001 Sum_probs=54.7
Q ss_pred CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccC-CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHH
Q 015325 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR 136 (409)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g-v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~ 136 (409)
++.+..+..+..-||++.-. ...+.. +.+ .| +++|+.|+... .+-.-..+.+++.+.|..++.+-|.........
T Consensus 26 ~v~~K~E~~~ptGSfK~R~a-~~~i~~-a~~-~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 101 (303)
T 2v03_A 26 EVWLKLEGNNPAGSVKDRAA-LSMIVE-AEK-RGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRA 101 (303)
T ss_dssp EEEEEEGGGSTTSBTHHHHH-HHHHHH-HHH-TTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred EEEEEeccCCCCCCcHHHHH-HHHHHH-HHH-cCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 45555553344556766432 122333 333 35 36677666654 466666777788899986665544444455566
Q ss_pred HHhhcCCeEEEEcC
Q 015325 137 QIQLSNPVIAFATS 150 (409)
Q Consensus 137 ~l~~~~~~~ii~~~ 150 (409)
.++..++++++++.
T Consensus 102 ~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 102 AMRAYGAELILVTK 115 (303)
T ss_dssp HHHHTTCEEEEECT
T ss_pred HHHHcCCEEEEECC
Confidence 78899999999885
No 106
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.92 E-value=1.5e+02 Score=26.70 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=37.2
Q ss_pred cCCCCCCEEEEEcCCCCch------HHHHH-HHHHhCCeEccCCC------------CCCHHHHHHHHhhcCCeEEEEcC
Q 015325 90 TRLSKNDTAFVLSTNSIEI------PILYF-SLLSLGVIISPANP------------VNTESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 90 ~gv~~g~~V~i~~~~~~~~------~~~~~-A~~~~G~~~v~l~~------------~~~~~~l~~~l~~~~~~~ii~~~ 150 (409)
.-+++||+|+|+.|.+.-. +-.-. -+-..|..++.-+. ....+++.+++..-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3578899999999887521 11112 22246766554322 12455566677777889999864
No 107
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=26.92 E-value=1.6e+02 Score=26.90 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCCchHHHHH-HHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 015325 92 LSKNDTAFVLSTNSIEIPILYF-SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFAT 149 (409)
Q Consensus 92 v~~g~~V~i~~~~~~~~~~~~~-A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 149 (409)
+++||.|++..+........+- .+...|+.++.++.+ +.+.+...++. ++++|+.+
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e 174 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLE 174 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEE
Confidence 4677777555443322222221 455667776666655 55666665543 45666643
No 108
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.85 E-value=1.3e+02 Score=26.54 Aligned_cols=60 Identities=23% Similarity=0.079 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEcCCCCc------hHHHHHH-HHHhCCeEccCCC------------CCCHHHHHHHHhhcCCeEEEEcC
Q 015325 91 RLSKNDTAFVLSTNSIE------IPILYFS-LLSLGVIISPANP------------VNTESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 91 gv~~g~~V~i~~~~~~~------~~~~~~A-~~~~G~~~v~l~~------------~~~~~~l~~~l~~~~~~~ii~~~ 150 (409)
-+++||+|+|+.|.+.- -+-.-.. +-..|..++.-+. ....+++.+++.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 46788888888887742 1111122 2235665554221 12455577777778889999864
No 109
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=26.71 E-value=2.2e+02 Score=24.44 Aligned_cols=90 Identities=11% Similarity=-0.015 Sum_probs=52.6
Q ss_pred CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccC-CCCCC--EEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHH
Q 015325 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKND--TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134 (409)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g-v~~g~--~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l 134 (409)
++.+..++.+..-||++.-.. ..+.. +.+ .| +++|+ .|+. ...+-.-..+.+++.+.|..++.+-|.......
T Consensus 25 ~v~~K~E~~~ptGSfK~R~a~-~~l~~-a~~-~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k 100 (304)
T 1ve1_A 25 EVWVKLEGLNPGGSIKDRPAW-YMIKD-AEE-RGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEER 100 (304)
T ss_dssp EEEEEEGGGSTTSBTTHHHHH-HHHHH-HHH-TTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHH
T ss_pred EEEEEecccCCCCcHHHHHHH-HHHHH-HHH-cCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 455555533445566653222 22333 333 35 45666 4443 445556666677888999865554443334555
Q ss_pred HHHHhhcCCeEEEEcCc
Q 015325 135 SRQIQLSNPVIAFATSS 151 (409)
Q Consensus 135 ~~~l~~~~~~~ii~~~~ 151 (409)
...++..++++++++..
T Consensus 101 ~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 101 KRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHHHTTCEEEEECTT
T ss_pred HHHHHHcCCEEEEECCC
Confidence 66788899999998764
No 110
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=26.59 E-value=1.7e+02 Score=25.71 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=38.1
Q ss_pred CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCC-------CCHHHHHHHHhhcCCeEEEEc
Q 015325 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV-------NTESEISRQIQLSNPVIAFAT 149 (409)
Q Consensus 92 v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~ 149 (409)
+++||.|++..+. +.....++...|+.++.++.. .+.+.+...+++.++++|+..
T Consensus 106 ~~~gd~vl~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPV---YNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSC---CHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCC---cHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 4678887765543 333445667788877776653 688999998886677777653
No 111
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=26.17 E-value=49 Score=28.40 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.0
Q ss_pred HHHHHhHhccCCCCCCEEEEEcC
Q 015325 81 SLASYLQNVTRLSKNDTAFVLST 103 (409)
Q Consensus 81 ~la~~L~~~~gv~~g~~V~i~~~ 103 (409)
.+.+.|++ +||++||.|.|...
T Consensus 17 ~L~~~L~~-LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 17 SITEDLKA-LGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHH-HTCCTTCEEEEEEC
T ss_pred HHHHHHHH-cCCCCCCEEEEEec
Confidence 36677998 99999999999875
No 112
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=25.99 E-value=64 Score=19.49 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=15.1
Q ss_pred hHhccCCCCCCEEEEEcCCC
Q 015325 86 LQNVTRLSKNDTAFVLSTNS 105 (409)
Q Consensus 86 L~~~~gv~~g~~V~i~~~~~ 105 (409)
+++.+|+++||.|.+...++
T Consensus 20 ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 20 VRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHSCCCTTCEEEEEECSS
T ss_pred HHHHcCcCCCCEEEEEEECC
Confidence 44448999999998876554
No 113
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=25.79 E-value=50 Score=28.47 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=23.4
Q ss_pred CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcC
Q 015325 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLST 103 (409)
Q Consensus 67 ~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~ 103 (409)
++.+|-.+| .+.|++ +||++||.|.|...
T Consensus 19 ~~~~T~~~L-------~~~L~~-LGI~~Gd~llVHsS 47 (286)
T 3sma_A 19 RELVTRDRL-------ASDLAA-LGVRPGGVLLVHAS 47 (286)
T ss_dssp CCEECHHHH-------HHHHHH-HTCCTTCEEEEEEC
T ss_pred CCCcCHHHH-------HHHHHH-cCCCCCCEEEEEec
Confidence 566776665 567998 99999999999875
No 114
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.45 E-value=1.2e+02 Score=28.20 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCC----------------CCHHHHHHHHhhcCCeEEEEcCchHHHHh
Q 015325 94 KNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV----------------NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (409)
Q Consensus 94 ~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~----------------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 157 (409)
.|.+|+|+......+-++- .+..+|..++.+-.. .+..++++.++..+++++|..........
T Consensus 312 ~Gkrv~i~~~~~~~~~l~~-~L~elGm~vv~~~~~~~~~~~~~~~~~~v~~~D~~~le~~i~~~~pDllig~~~~~~~a~ 390 (458)
T 3pdi_B 312 SSARTAIAADPDLLLGFDA-LLRSMGAHTVAAVVPARAAALVDSPLPSVRVGDLEDLEHAARAGQAQLVIGNSHALASAR 390 (458)
T ss_dssp TTCEEEEECCHHHHHHHHH-HHHTTTCEEEEEEESSCCSCCTTTTSSCEEESHHHHHHHHHHHHTCSEEEECTTHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHH-HHHHCCCEEEEEEECCCChhhhhCccCcEEeCCHHHHHHHHHhcCCCEEEEChhHHHHHH
Confidence 3789999887543333333 337899876654321 13356777788889999998877666666
Q ss_pred hcCCeEEEeCC
Q 015325 158 KLKHRTILIDS 168 (409)
Q Consensus 158 ~~~~~~~~~~~ 168 (409)
+++...+.+.-
T Consensus 391 k~gip~~~~gf 401 (458)
T 3pdi_B 391 RLGVPLLRAGF 401 (458)
T ss_dssp HTTCCEEECSS
T ss_pred HcCCCEEEecC
Confidence 67777665553
No 115
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=25.33 E-value=1.1e+02 Score=23.04 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=6.0
Q ss_pred CCCcEEEeC
Q 015325 56 DDTVALINS 64 (409)
Q Consensus 56 p~~~a~~~~ 64 (409)
|.++|++.-
T Consensus 13 p~~IavIGa 21 (145)
T 2duw_A 13 TRTIALVGA 21 (145)
T ss_dssp CCCEEEESC
T ss_pred CCEEEEECc
Confidence 567777754
No 116
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=24.77 E-value=88 Score=27.85 Aligned_cols=77 Identities=9% Similarity=-0.047 Sum_probs=47.0
Q ss_pred ceeeHHHHHHHH--HHHH-HHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCe
Q 015325 68 LRVSFSEFTRRT--NSLA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 68 ~~~Ty~el~~~~--~~la-~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
..+++.+..... -..| ..|.+..++++|++|+|.. .+.--..+...+...|+..+.+.. +.+.+ ..+++.+++
T Consensus 160 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~ 235 (363)
T 3uog_A 160 KSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSS--SREKL-DRAFALGAD 235 (363)
T ss_dssp TTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEES--CHHHH-HHHHHHTCS
T ss_pred CCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEec--CchhH-HHHHHcCCC
Confidence 357777765322 1122 3342337899999999998 555445555555678987666543 33443 346777887
Q ss_pred EEEE
Q 015325 145 IAFA 148 (409)
Q Consensus 145 ~ii~ 148 (409)
.++.
T Consensus 236 ~vi~ 239 (363)
T 3uog_A 236 HGIN 239 (363)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7765
No 117
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=24.32 E-value=51 Score=23.05 Aligned_cols=33 Identities=30% Similarity=0.650 Sum_probs=24.8
Q ss_pred cCCceEEEecCCCCCCCC----CCC-cceEEEecCccc
Q 015325 368 SAGLEAKIVDPETGDSLP----PGK-EGELSIRGPTIM 400 (409)
Q Consensus 368 ~~~~~v~i~d~~~g~~~~----~g~-~Gei~v~g~~v~ 400 (409)
+|+=+|.|++.++|..+. +|+ .|+|++.|+.--
T Consensus 14 l~~E~V~IvNvnNG~RfeTYvI~GerSG~I~lNGAAAr 51 (97)
T 1uhe_A 14 REGMKVEIVDVNNGERFSTYVILGKKRGEICVNGAAAR 51 (97)
T ss_dssp CTTCEEEEEETTTCCEEEEECEEECSTTCEEEEGGGGG
T ss_pred CCCCEEEEEECCCCceEEEEEEeeccCCeEEEchHHHc
Confidence 577889999988887663 333 599999997543
No 118
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=24.16 E-value=3.5e+02 Score=23.84 Aligned_cols=55 Identities=5% Similarity=0.003 Sum_probs=38.7
Q ss_pred CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhc---CCeEEEEcC
Q 015325 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS---NPVIAFATS 150 (409)
Q Consensus 92 v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~ii~~~ 150 (409)
.++||.|++..+.. .....++...|+.++.++. .+.+.+...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p~~---~~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDH---ASIIDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCC---HHHHHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccC---HHHHHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 46889887776543 3344556778988887775 4678888888775 677777654
No 119
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=24.06 E-value=1.1e+02 Score=26.54 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=46.8
Q ss_pred ceeeHHHHHHH---HHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCe
Q 015325 68 LRVSFSEFTRR---TNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 68 ~~~Ty~el~~~---~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
..+++.+.... .....+.|.. .++++|++|+|... +.--..+...+...|+..+.+. +-. . ...+++.+++
T Consensus 114 ~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~--~-~~~~~~lGa~ 187 (315)
T 3goh_A 114 DNLSFERAAALPCPLLTAWQAFEK-IPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASL--S-QALAAKRGVR 187 (315)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHTT-SCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSC--C-HHHHHHHTEE
T ss_pred CCCCHHHHhhCccHHHHHHHHHhh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-Chh--h-HHHHHHcCCC
Confidence 35688876422 2223334544 79999999999998 6555555555566798766665 222 2 2345678888
Q ss_pred EEE
Q 015325 145 IAF 147 (409)
Q Consensus 145 ~ii 147 (409)
.++
T Consensus 188 ~v~ 190 (315)
T 3goh_A 188 HLY 190 (315)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
No 120
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.71 E-value=2.2e+02 Score=22.87 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=33.4
Q ss_pred HHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 015325 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 112 ~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (409)
...+...|.-++.+..+.+.+++...+++.++++|..+.
T Consensus 109 a~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 109 AMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp HHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 334557889999999999999999999999999998765
No 121
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=23.60 E-value=2.1e+02 Score=24.94 Aligned_cols=89 Identities=15% Similarity=0.030 Sum_probs=55.4
Q ss_pred CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccC-CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHH
Q 015325 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR 136 (409)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g-v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~ 136 (409)
++.+..+..+..-||++--. ...+... .+ .| +++|+.|+.. ..+-.-..+.+++.+.|..++.+-|.........
T Consensus 38 ~v~~K~E~~~ptGSfK~R~a-~~~l~~a-~~-~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 113 (325)
T 3dwg_A 38 RLWAKLEDRNPTGSIKDRPA-VRMIEQA-EA-DGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQ 113 (325)
T ss_dssp EEEEEETTSSTTSBTTHHHH-HHHHHHH-HH-TTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHH
T ss_pred EEEEEECCCCCCCChHHHHH-HHHHHHH-HH-cCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 56666664444556665221 1222333 33 35 4667776554 3566667777888899986665545444455667
Q ss_pred HHhhcCCeEEEEcC
Q 015325 137 QIQLSNPVIAFATS 150 (409)
Q Consensus 137 ~l~~~~~~~ii~~~ 150 (409)
.++..++++++++.
T Consensus 114 ~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 114 LLELYGAQIIFSAA 127 (325)
T ss_dssp HHHHHTCEEEEECS
T ss_pred HHHHCCCEEEEECC
Confidence 78899999999975
No 122
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=23.54 E-value=1.4e+02 Score=26.50 Aligned_cols=76 Identities=8% Similarity=-0.088 Sum_probs=43.9
Q ss_pred eeeHHHHHHH---HHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325 69 RVSFSEFTRR---TNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (409)
Q Consensus 69 ~~Ty~el~~~---~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (409)
.+++.+.... .....+.|.+ .++++|++|+|+..-.+-..++.+ +...|+..+.+..+-. . ...+++.+++.
T Consensus 152 ~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~ql-ak~~Ga~Vi~~~~~~~--~-~~~~~~lGa~~ 226 (360)
T 1piw_A 152 NIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLI-SKAMGAETYVISRSSR--K-REDAMKMGADH 226 (360)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHH-HHHHTCEEEEEESSST--T-HHHHHHHTCSE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEcCCHH--H-HHHHHHcCCCE
Confidence 4677764321 1222344666 799999999999983344444444 4457886555554322 2 22345567777
Q ss_pred EEEc
Q 015325 146 AFAT 149 (409)
Q Consensus 146 ii~~ 149 (409)
++..
T Consensus 227 v~~~ 230 (360)
T 1piw_A 227 YIAT 230 (360)
T ss_dssp EEEG
T ss_pred EEcC
Confidence 7654
No 123
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=23.46 E-value=1.5e+02 Score=26.45 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=39.4
Q ss_pred CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 015325 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 92 v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (409)
.++||.|.+-.+ .+.....++...|+..++++. .+.+++...++..+++++++..
T Consensus 140 ~~~gd~Vl~~~~---~~~~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 140 CQPNTNVYIDFF---AHMSLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp CCTTCEEEEETT---SCHHHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCEEEECCC---cCHHHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECC
Confidence 468998876443 344555677788988888765 4688888888876667777764
No 124
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=23.44 E-value=64 Score=20.20 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=15.1
Q ss_pred hHhccCCCCCCEEEEEcCCC
Q 015325 86 LQNVTRLSKNDTAFVLSTNS 105 (409)
Q Consensus 86 L~~~~gv~~g~~V~i~~~~~ 105 (409)
+++.+|+++||.|.+...++
T Consensus 30 iR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 30 LRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp HHHHTTCCTTCEEEEEEETT
T ss_pred HHHHcCCCCCCEEEEEEECC
Confidence 44448999999998876543
No 125
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.43 E-value=2.9e+02 Score=22.91 Aligned_cols=64 Identities=6% Similarity=-0.068 Sum_probs=32.0
Q ss_pred HHHhHhccCCCCCCEEEEEcCCCCc-hHHHH-----HHHHHhCCe-EccCCCCCCHHHH---HHHHhhcCCeEEEEcC
Q 015325 83 ASYLQNVTRLSKNDTAFVLSTNSIE-IPILY-----FSLLSLGVI-ISPANPVNTESEI---SRQIQLSNPVIAFATS 150 (409)
Q Consensus 83 a~~L~~~~gv~~g~~V~i~~~~~~~-~~~~~-----~A~~~~G~~-~v~l~~~~~~~~l---~~~l~~~~~~~ii~~~ 150 (409)
|+.|+. ++...|+++.++... +...+ -++...|.. .+..+.....+.- .+.+...+++.+|...
T Consensus 2 Ar~L~~----~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 2 SLTLYQ----KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ----------CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred chhhhc----CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 556665 456689999887443 22222 245566777 6666655554432 2333445666666544
No 126
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=23.39 E-value=2.8e+02 Score=24.03 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=35.5
Q ss_pred CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCC--CC----CCHHHHHHHHhh----cCCeEEEEc
Q 015325 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN--PV----NTESEISRQIQL----SNPVIAFAT 149 (409)
Q Consensus 92 v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~ii~~ 149 (409)
+++||.|++..+... ....++...|+.++.++ .+ .+.+++...+++ -++++++..
T Consensus 90 ~~~gd~vl~~~~~~~---~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHY---SSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCH---HHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcch---HHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 467898877765433 33344677888776666 32 367888888874 356666654
No 127
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=23.17 E-value=2.1e+02 Score=24.75 Aligned_cols=79 Identities=8% Similarity=-0.001 Sum_probs=47.6
Q ss_pred ceeeHHHHHHH---HHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCe
Q 015325 68 LRVSFSEFTRR---TNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 68 ~~~Ty~el~~~---~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
..+++.+.... .-.....+.+..++++|++|+|....+.--..+...+...|+..+.+.. +.+++. .+++.+++
T Consensus 111 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~~Ga~ 187 (325)
T 3jyn_A 111 DSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS--SPEKAA-HAKALGAW 187 (325)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES--SHHHHH-HHHHHTCS
T ss_pred CCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC--CHHHHH-HHHHcCCC
Confidence 35677775421 2222334444358999999999986665555555555667987665553 344443 45567777
Q ss_pred EEEEc
Q 015325 145 IAFAT 149 (409)
Q Consensus 145 ~ii~~ 149 (409)
.++..
T Consensus 188 ~~~~~ 192 (325)
T 3jyn_A 188 ETIDY 192 (325)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 76653
No 128
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=23.14 E-value=1.4e+02 Score=25.18 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=29.5
Q ss_pred HHHHHHhHhccCCCCCCEEEEEcCCCCc-hHHHHHHHHHhCC
Q 015325 80 NSLASYLQNVTRLSKNDTAFVLSTNSIE-IPILYFSLLSLGV 120 (409)
Q Consensus 80 ~~la~~L~~~~gv~~g~~V~i~~~~~~~-~~~~~~A~~~~G~ 120 (409)
..++..+.+ +|+.+++.|++++..+.. ...+.+.+...|.
T Consensus 72 ~~~~~~~~~-~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~ 112 (280)
T 1urh_A 72 ETFAVAMRE-LGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGV 112 (280)
T ss_dssp HHHHHHHHH-TTCCTTSEEEEECSSSCSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-cCCCCCCeEEEECCCCCccHHHHHHHHHHcCC
Confidence 456667777 899999999999987665 5555666666665
No 129
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=22.94 E-value=93 Score=28.79 Aligned_cols=79 Identities=11% Similarity=-0.023 Sum_probs=48.4
Q ss_pred ceeeHHHHHHH--HHHHHH-HhHh--ccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcC
Q 015325 68 LRVSFSEFTRR--TNSLAS-YLQN--VTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSN 142 (409)
Q Consensus 68 ~~~Ty~el~~~--~~~la~-~L~~--~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 142 (409)
..+++.+.... +...|. .|.. ..++++|++|+|....+.--..+...+...|+..+.+.. +.+.+ ..+++.+
T Consensus 197 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~--~~~~~-~~~~~lG 273 (456)
T 3krt_A 197 DHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS--SPQKA-EICRAMG 273 (456)
T ss_dssp TTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHHHT
T ss_pred CCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC--CHHHH-HHHHhhC
Confidence 34677775422 122222 2322 148999999999987665555555556678987666553 34444 4567788
Q ss_pred CeEEEEc
Q 015325 143 PVIAFAT 149 (409)
Q Consensus 143 ~~~ii~~ 149 (409)
++.++..
T Consensus 274 a~~vi~~ 280 (456)
T 3krt_A 274 AEAIIDR 280 (456)
T ss_dssp CCEEEET
T ss_pred CcEEEec
Confidence 8877654
No 130
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=22.84 E-value=88 Score=23.54 Aligned_cols=40 Identities=8% Similarity=-0.046 Sum_probs=23.4
Q ss_pred HHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC
Q 015325 80 NSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (409)
Q Consensus 80 ~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~ 120 (409)
.++...|.+ .|+.+++.|+++|..+.....+...+...|.
T Consensus 66 ~~l~~~l~~-~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~ 105 (148)
T 2fsx_A 66 AELRDRIPA-DADQHERPVIFLCRSGNRSIGAAEVATEAGI 105 (148)
T ss_dssp HHHHHHCC--------CCEEEECSSSSTHHHHHHHHHHTTC
T ss_pred HHHHHHHhh-ccCCCCCEEEEEcCCChhHHHHHHHHHHcCC
Confidence 445555555 5777788899988888777777777777775
No 131
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=22.55 E-value=3.4e+02 Score=24.91 Aligned_cols=96 Identities=7% Similarity=-0.044 Sum_probs=58.7
Q ss_pred CCcEEEeCCCCc-eeeHHHH--HHHHHHHHHHh-HhccCC-CCCC----------------EEEEEcCCCCchHHHHHHH
Q 015325 57 DTVALINSVTGL-RVSFSEF--TRRTNSLASYL-QNVTRL-SKND----------------TAFVLSTNSIEIPILYFSL 115 (409)
Q Consensus 57 ~~~a~~~~~~~~-~~Ty~el--~~~~~~la~~L-~~~~gv-~~g~----------------~V~i~~~~~~~~~~~~~A~ 115 (409)
.++.+-.+..+. .-||++- ...+.+++..+ ++ .|+ .+|+ +.++....+-.-..+.+++
T Consensus 101 ~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~-~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~a 179 (442)
T 3ss7_X 101 GQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALE-AGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMS 179 (442)
T ss_dssp SEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHH-TTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHH
T ss_pred CeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHH-cCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHH
Confidence 456666663333 5677763 23334444332 33 564 4554 3455555677777778889
Q ss_pred HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH
Q 015325 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV 153 (409)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 153 (409)
.+.|..++.+=|..........++..++++++++....
T Consensus 180 a~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~ 217 (442)
T 3ss7_X 180 ARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYG 217 (442)
T ss_dssp HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHH
T ss_pred HHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 99998555444444445566678899999999987643
No 132
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=22.55 E-value=1.7e+02 Score=25.68 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=48.3
Q ss_pred ceeeHHHHHHHHHH--HH-HHhHhccCCC------CCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHH
Q 015325 68 LRVSFSEFTRRTNS--LA-SYLQNVTRLS------KNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQI 138 (409)
Q Consensus 68 ~~~Ty~el~~~~~~--la-~~L~~~~gv~------~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l 138 (409)
..+++.+....... .| ..|.+..+++ +|++|+|....+.--..+...+...|+..+.+.. +.+. ...+
T Consensus 115 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~--~~~~-~~~~ 191 (346)
T 3fbg_A 115 KNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTAS--RNET-IEWT 191 (346)
T ss_dssp SSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC--SHHH-HHHH
T ss_pred CCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC--CHHH-HHHH
Confidence 35677765432111 22 2343336787 8999999966665555555555688987666654 3344 3445
Q ss_pred hhcCCeEEEEcC
Q 015325 139 QLSNPVIAFATS 150 (409)
Q Consensus 139 ~~~~~~~ii~~~ 150 (409)
++.+++.++...
T Consensus 192 ~~lGa~~vi~~~ 203 (346)
T 3fbg_A 192 KKMGADIVLNHK 203 (346)
T ss_dssp HHHTCSEEECTT
T ss_pred HhcCCcEEEECC
Confidence 667888777554
No 133
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=22.49 E-value=1.8e+02 Score=25.68 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=36.8
Q ss_pred hHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCC--CC---CCHHHHHHHHhhcCCeEEEEc
Q 015325 86 LQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN--PV---NTESEISRQIQLSNPVIAFAT 149 (409)
Q Consensus 86 L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~--~~---~~~~~l~~~l~~~~~~~ii~~ 149 (409)
++. +++++||.|++..+.... ...++...|+.++.++ ++ .+.+.+...++. ++++|+..
T Consensus 71 ~~~-~~~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 71 LMA-LGIGEGDEVITPSMTWVS---TLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHH-TTCCTTCEEEEESSSCHH---HHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHH-cCCCCCCEEEeCCCccHh---HHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 444 557889988776554333 3445667787665554 32 567788777764 56666654
No 134
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=22.47 E-value=1.2e+02 Score=26.83 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=45.1
Q ss_pred ceeeHHHHHHH---HHHHHHHhHhccCCC-CCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCC
Q 015325 68 LRVSFSEFTRR---TNSLASYLQNVTRLS-KNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNP 143 (409)
Q Consensus 68 ~~~Ty~el~~~---~~~la~~L~~~~gv~-~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 143 (409)
..+++.+.... ....-+.|.+ .+++ +|++|+|...-.+-..++.+| ...|+..+.+..+ .+.+....++.++
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~~~--~~~~~~~~~~lGa 226 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSH-FGLKQPGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSS--NKKREEALQDLGA 226 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHH-TSTTSTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESS--TTHHHHHHTTSCC
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCC--hHHHHHHHHHcCC
Confidence 34777764321 1111234566 7888 999999998533444444444 4568865555543 2344444447787
Q ss_pred eEEEEcC
Q 015325 144 VIAFATS 150 (409)
Q Consensus 144 ~~ii~~~ 150 (409)
+.++...
T Consensus 227 ~~vi~~~ 233 (357)
T 2cf5_A 227 DDYVIGS 233 (357)
T ss_dssp SCEEETT
T ss_pred ceeeccc
Confidence 7666544
No 135
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=22.46 E-value=1.6e+02 Score=26.19 Aligned_cols=77 Identities=4% Similarity=-0.109 Sum_probs=45.6
Q ss_pred eeeHHHHHHHH--HHHHH-HhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC-eEccCCCCCCHHHHHHHHhhcCCe
Q 015325 69 RVSFSEFTRRT--NSLAS-YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV-IISPANPVNTESEISRQIQLSNPV 144 (409)
Q Consensus 69 ~~Ty~el~~~~--~~la~-~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~ 144 (409)
.+++.+..... -..|. .+.+..++++|++|+|+.. +.--..+...+...|+ ..+.++.+-. . .+++++.+++
T Consensus 165 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~--~-~~~a~~lGa~ 240 (378)
T 3uko_A 165 TAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSK--K-YETAKKFGVN 240 (378)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTT--H-HHHHHTTTCC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH--H-HHHHHHcCCc
Confidence 46777754432 12222 2333378999999999976 5444444455556788 5666654432 2 3356778887
Q ss_pred EEEEc
Q 015325 145 IAFAT 149 (409)
Q Consensus 145 ~ii~~ 149 (409)
.++..
T Consensus 241 ~vi~~ 245 (378)
T 3uko_A 241 EFVNP 245 (378)
T ss_dssp EEECG
T ss_pred EEEcc
Confidence 76653
No 136
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=21.94 E-value=2.2e+02 Score=25.19 Aligned_cols=61 Identities=7% Similarity=-0.075 Sum_probs=36.8
Q ss_pred HhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEE
Q 015325 85 YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFA 148 (409)
Q Consensus 85 ~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 148 (409)
.|.+..++++|++|+|....+.--..+...+...|+..+.+..+ .+.+ ..+++.+++.++.
T Consensus 154 al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~--~~~~-~~~~~~Ga~~~~~ 214 (362)
T 2c0c_A 154 SLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSS--DEKS-AFLKSLGCDRPIN 214 (362)
T ss_dssp HHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESS--HHHH-HHHHHTTCSEEEE
T ss_pred HHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECC--HHHH-HHHHHcCCcEEEe
Confidence 34332579999999999854544444444445668866555542 3333 3455677776654
No 137
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.86 E-value=4.9e+02 Score=24.22 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCC-CCHHHHHHHHhhcCCeEEEEcC
Q 015325 94 KNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV-NTESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 94 ~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~-~~~~~l~~~l~~~~~~~ii~~~ 150 (409)
.|.+|+|+......+-++- .+..+|..++.+... ...+....+.+..+...++.++
T Consensus 331 ~GKrv~i~~~~~~~~~l~~-~L~ElGmevv~~gt~~~~~~d~~~~~~~l~~~~~i~~d 387 (483)
T 3pdi_A 331 EGKRVLLYTGGVKSWSVVS-ALQDLGMKVVATGTKKSTEEDKARIRELMGDDVKMLDE 387 (483)
T ss_dssp TTCEEEEECSSSCHHHHHH-HHHHHTCEEEEECBSSSCHHHHHHHHHHSCSSCCBCCS
T ss_pred cCCEEEEECCCchHHHHHH-HHHHCCCEEEEEecCCCCHHHHHHHHHhcCCCCEEEeC
Confidence 3789999987665544443 357899987766433 3444444444444444444443
No 138
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=21.79 E-value=1.4e+02 Score=26.05 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=39.1
Q ss_pred HHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCe-EccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 015325 83 ASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI-ISPANPVNTESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 83 a~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (409)
...+.. .++++|++|+|... +.--..+...+...|+. .+.++. +. +...++++.+++.++...
T Consensus 150 ~~~~~~-~~~~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~--~~-~k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 150 LHAFHL-AQGCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDI--SS-EKLALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHH-TTCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES--CH-HHHHHHHHTTCSEEEETT
T ss_pred HHHHHH-hccCCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEec--hH-HHHHHHHHcCCeEEEeCC
Confidence 334555 78999999999976 44444445555566754 344433 23 334567788888777544
No 139
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=21.53 E-value=1.2e+02 Score=21.22 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=24.3
Q ss_pred cCCceEEEecCCCCCCCC----CCC--cceEEEecCccc
Q 015325 368 SAGLEAKIVDPETGDSLP----PGK--EGELSIRGPTIM 400 (409)
Q Consensus 368 ~~~~~v~i~d~~~g~~~~----~g~--~Gei~v~g~~v~ 400 (409)
+|+-++.|++.++|..+. +|+ .|+|++.|+.--
T Consensus 15 ~~~E~V~IvNvnNG~Rf~TYvI~GerGSG~I~lNGAAAr 53 (96)
T 1vc3_B 15 LPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAAAH 53 (96)
T ss_dssp CTTCEEEEEETTTCCEEEEECEEECTTTTCEEEEGGGGG
T ss_pred CCCCEEEEEECCCCceEEEEEEEccCCCCeEEEchHHHc
Confidence 577889999988887663 333 388999997543
No 140
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.17 E-value=2.1e+02 Score=20.77 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccC--CCCCCHHHHHH
Q 015325 83 ASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA--NPVNTESEISR 136 (409)
Q Consensus 83 a~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l--~~~~~~~~l~~ 136 (409)
+.+|.+ .|+.++..+.|...+..+.+-++-=+++.|...+.+ .+..+..+.++
T Consensus 47 ~~~L~~-~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RR 101 (119)
T 1ofu_X 47 HEWLRR-AGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 101 (119)
T ss_dssp HHHHHH-TTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHH
T ss_pred HHHHHH-cCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 566777 888888777777777777777777777777633222 24555554443
No 141
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=21.05 E-value=1.5e+02 Score=26.27 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=51.6
Q ss_pred CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCC-CCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHH
Q 015325 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR 136 (409)
Q Consensus 58 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv-~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~ 136 (409)
++.+..++-+..-||++- .+..+...+.+ .|. .+.+.|+.. ..+-.-..+.+++.+.|..++.+=|.........
T Consensus 41 ~i~~K~E~~~ptGSfK~R--ga~~~i~~a~~-~g~~~~~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~ 116 (346)
T 3l6b_A 41 NLFFKCELFQKTGSFKIR--GALNAVRSLVP-DALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKL 116 (346)
T ss_dssp EEEEEEGGGSGGGBTHHH--HHHHHHHTTC------CCCSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHH
T ss_pred eEEEEeCCCCCCCCcHHH--HHHHHHHHHHH-hccccCCCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 456656544455566641 12222222222 232 233444433 3566667777889999986555545445556677
Q ss_pred HHhhcCCeEEEEcCch
Q 015325 137 QIQLSNPVIAFATSSV 152 (409)
Q Consensus 137 ~l~~~~~~~ii~~~~~ 152 (409)
.++..++++++++...
T Consensus 117 ~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 117 AIQAYGASIVYCEPSD 132 (346)
T ss_dssp HHHHTTCEEEEECSSH
T ss_pred HHHHCCCEEEEECCCH
Confidence 8899999999998654
No 142
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=20.98 E-value=2.5e+02 Score=30.10 Aligned_cols=91 Identities=9% Similarity=-0.044 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC
Q 015325 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR 267 (409)
Q Consensus 190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~ 267 (409)
.++.+|++ +. +-.+|.+.+...+..+...+ .+..+++++...++-+..+ +..+++.+..|+..+.++.
T Consensus 477 ~p~~~Av~-~~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vv~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALT-YS--------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLEL-VIGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEE-SS--------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEE-EC--------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEECC
Confidence 46677754 21 12478888876666555443 2678899999988876432 3688999999999998864
Q ss_pred -CCHHHHHHHHHHhcceeEeechH
Q 015325 268 -FDLKMMLKAVEEFRVTHAAVTPP 290 (409)
Q Consensus 268 -~~~~~~~~~i~~~~~t~l~~~p~ 290 (409)
...+.+...+++.++..+.....
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~ 570 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQE 570 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECST
T ss_pred CCHHHHHHHHHHHcCCCEEEECcc
Confidence 67789999999999999887654
No 143
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=20.90 E-value=1.7e+02 Score=26.31 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=34.7
Q ss_pred HhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC-eEccCCCCCCHHHHHHHHhhcCCeE
Q 015325 85 YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV-IISPANPVNTESEISRQIQLSNPVI 145 (409)
Q Consensus 85 ~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (409)
.|.. .++++|++|+|... +.--..++..+...|+ ..+.++. +.+. ..++++.+++.
T Consensus 177 al~~-~~~~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~ 233 (398)
T 1kol_A 177 GAVT-AGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDL--NPAR-LAHAKAQGFEI 233 (398)
T ss_dssp HHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES--CHHH-HHHHHHTTCEE
T ss_pred HHHH-cCCCCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcC--CHHH-HHHHHHcCCcE
Confidence 3455 79999999999884 5444444444456787 4444443 3333 34557788873
No 144
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=20.89 E-value=1.4e+02 Score=27.06 Aligned_cols=55 Identities=11% Similarity=-0.015 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEcCCCCchHHHHHHHHHhCC-eEccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 015325 91 RLSKNDTAFVLSTNSIEIPILYFSLLSLGV-IISPANPVNTESEISRQIQLSNPVIAFAT 149 (409)
Q Consensus 91 gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 149 (409)
++++|++|+|... +.--..++..+...|+ .++.++.+ . +...++++.+++.++..
T Consensus 210 ~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~--~-~~~~~~~~lGa~~vi~~ 265 (404)
T 3ip1_A 210 GIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPS--E-VRRNLAKELGADHVIDP 265 (404)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC--H-HHHHHHHHHTCSEEECT
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC--H-HHHHHHHHcCCCEEEcC
Confidence 7999999999986 5444444444456788 56655532 3 33445677788777643
No 145
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=20.51 E-value=4.3e+02 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCCCchHHHHHHHHHhCCeEcc
Q 015325 94 KNDTAFVLSTNSIEIPILYFSLLSLGVIISP 124 (409)
Q Consensus 94 ~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~ 124 (409)
.|.+|+|+......+-++-+ +..+|..++.
T Consensus 311 ~gkrv~i~~~~~~~~~l~~~-L~elG~~vv~ 340 (458)
T 1mio_B 311 QGKKVALLGDPDEIIALSKF-IIELGAIPKY 340 (458)
T ss_dssp TTCEEEEEECHHHHHHHHHH-HHTTTCEEEE
T ss_pred CCCEEEEEcCchHHHHHHHH-HHHCCCEEEE
Confidence 47899999876444333333 3488886664
No 146
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=20.42 E-value=1.8e+02 Score=25.57 Aligned_cols=76 Identities=9% Similarity=0.098 Sum_probs=43.2
Q ss_pred eeeHHHHHHH-H-HHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC-eEccCCCCCCHHHHHHHHhhcCCeE
Q 015325 69 RVSFSEFTRR-T-NSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV-IISPANPVNTESEISRQIQLSNPVI 145 (409)
Q Consensus 69 ~~Ty~el~~~-~-~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (409)
.+++.+..-. . ...-+.|.. .++++|++|+|...-.+-..++.+| ...|+ ..+.+.. +.+. ...+++.+++.
T Consensus 145 ~l~~~~aa~~~~~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~ 219 (356)
T 1pl8_A 145 NVTFEEGALIEPLSVGIHACRR-GGVTLGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDL--SATR-LSKAKEIGADL 219 (356)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCHHHHHhhchHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECC--CHHH-HHHHHHhCCCE
Confidence 4677764321 1 111233455 7999999999998533344444444 45787 5555543 2333 34566778876
Q ss_pred EEEc
Q 015325 146 AFAT 149 (409)
Q Consensus 146 ii~~ 149 (409)
++..
T Consensus 220 vi~~ 223 (356)
T 1pl8_A 220 VLQI 223 (356)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 6643
No 147
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=20.37 E-value=2e+02 Score=23.97 Aligned_cols=70 Identities=3% Similarity=-0.031 Sum_probs=43.3
Q ss_pred HHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhC----CeEccCCCCCC--HHHHHHHHhhcCCeEEEEcC
Q 015325 77 RRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG----VIISPANPVNT--ESEISRQIQLSNPVIAFATS 150 (409)
Q Consensus 77 ~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G----~~~v~l~~~~~--~~~l~~~l~~~~~~~ii~~~ 150 (409)
+..+++..+|++ . .+++|++.+.-+.++.++..-+.+++ ...+.++...+ .+....+.+..++++.+.+-
T Consensus 8 ~~~~~l~~~i~~-~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi~~~~i~i 83 (257)
T 2e18_A 8 KVIERILEFIRE-K---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVINI 83 (257)
T ss_dssp HHHHHHHHHHHH-H---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHHH-h---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEC
Confidence 344567777777 5 35678888888999987766665553 23455554432 33445556666776665543
No 148
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=20.29 E-value=3e+02 Score=24.22 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCC-----CCHHHHHHHHhhcCCeEEEEc
Q 015325 91 RLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV-----NTESEISRQIQLSNPVIAFAT 149 (409)
Q Consensus 91 gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~ii~~ 149 (409)
++++||.|++..+. +.....++...|+.++.++.+ .+.+++...++. ++++|+..
T Consensus 76 ~~~~g~~Vi~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVS---WSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSS---CHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCC---cHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 67889988776554 334444666788866554432 367788777754 55666653
No 149
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=20.12 E-value=2.8e+02 Score=23.89 Aligned_cols=91 Identities=12% Similarity=-0.017 Sum_probs=56.4
Q ss_pred CCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCC-CCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (409)
Q Consensus 57 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv-~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~ 135 (409)
.++.+..+..+..-||++.-.. ..+.. +.+ .|. ++|+.|+.. ..+-.-..+.+++.+.|..++.+-|........
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a~-~~i~~-a~~-~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~ 101 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIGA-NMVWQ-AEK-DGTLTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERK 101 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHHH-HHHHH-HHH-TTSSCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHH
T ss_pred CEEEEEeccCCCCCChHHHHHH-HHHHH-HHH-cCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence 4577766654556677765432 22333 333 454 566655554 356666677778889998555544433444556
Q ss_pred HHHhhcCCeEEEEcCc
Q 015325 136 RQIQLSNPVIAFATSS 151 (409)
Q Consensus 136 ~~l~~~~~~~ii~~~~ 151 (409)
..++..++++++++..
T Consensus 102 ~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 102 RLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEeCCC
Confidence 6788899999998764
No 150
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=20.11 E-value=1.6e+02 Score=24.76 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHhHhccCCCCCCEEEEEcCCCC-chHHHHHHHHHhCC
Q 015325 80 NSLASYLQNVTRLSKNDTAFVLSTNSI-EIPILYFSLLSLGV 120 (409)
Q Consensus 80 ~~la~~L~~~~gv~~g~~V~i~~~~~~-~~~~~~~A~~~~G~ 120 (409)
..++..+.+ +|+.+++.|++++..+. ....+.+.+...|.
T Consensus 67 ~~~~~~~~~-~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~ 107 (271)
T 1e0c_A 67 EQLESLFGE-LGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQ 107 (271)
T ss_dssp HHHHHHHHH-HTCCTTCEEEEECSSSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-cCCCCCCeEEEEcCCCCccHHHHHHHHHHcCC
Done!