BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015329
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299
G ++ M+ PN ATF + V K A ++ M+ FGI+P +Y +
Sbjct: 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148
Query: 300 GFCRSGHLDMAKKVYSAM 317
GFCR G D A +V + M
Sbjct: 149 GFCRKGDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKV 313
PN ATF + V K A + + FGI+P +Y + GFCR G D A +V
Sbjct: 103 PNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 35/193 (18%)
Query: 68 KANAHNRIVIENKYAFEDTVSRLAGARRF-DYIEHLLEHQKSLPQGRREGFIMRIMMLYG 126
K ++N IV+ K A D + G+ +F D++ + R+G + + +
Sbjct: 28 KKGSYNNIVVHVKTAVADNLLFYLGSAKFIDFLAIEM----------RKGKVSFLWDVGS 77
Query: 127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDI 186
G +++ T D + Y + + N ++ V R L +A + VP +H
Sbjct: 78 GVGRVEYPDLTIDDSYWYRIEASRTGRNGSISV----RALDGPKASM--VPSTYH----- 126
Query: 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD---VITYTTLISAFYKDNRPEIGNGL 243
++ + + + A L + + K D VIT+T + Y DN+P GL
Sbjct: 127 ---SVSPPGYTILDVDANAMLFVGGLTGKIKKADAVRVITFTGCMGETYFDNKPI---GL 180
Query: 244 WNLMV----CKGC 252
WN CKGC
Sbjct: 181 WNFREKEGDCKGC 193
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 236 RPEIGNGLWNLMVCKGCFPNLA----TFNVR-IQHLVNKRRSWQANKLMGLMQRFGIEPD 290
R EIG + L+ CKG F + F VR ++HL + R+ +K G
Sbjct: 117 RKEIGELAYKLIPCKGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENG---------- 166
Query: 291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLG---RRLMPNRKIYQTMIHYLCQEGDFNLAYI 347
Y L + D+AK +S LG R+M + ++ G F++A
Sbjct: 167 ---YRLWV---------DIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIA-- 212
Query: 348 MCKDSMKKNWVPSVDTISALLEGLKKN 374
CK++ K + ++D +E LKKN
Sbjct: 213 -CKNAKK---IYAIDINPHAIELLKKN 235
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 36/147 (24%)
Query: 236 RPEIGNGLWNLMVCKGCFPNLA----TFNVR-IQHLVNKRRSWQANKLMGLMQRFGIEPD 290
R EIG + L+ CKG F + F VR ++HL + R+ +K G
Sbjct: 117 RKEIGELAYKLIPCKGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENG---------- 166
Query: 291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLG---RRLMPNRKIYQTMIHYLCQEGDFNLAYI 347
Y L + D+AK +S LG R+M + ++ G F++A
Sbjct: 167 ---YRLWV---------DIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIA-- 212
Query: 348 MCKDSMKKNWVPSVDTISALLEGLKKN 374
CK++ K + ++D +E L KN
Sbjct: 213 -CKNAKK---IYAIDINPHAIELLXKN 235
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 36/147 (24%)
Query: 236 RPEIGNGLWNLMVCKGCFPNLA----TFNVR-IQHLVNKRRSWQANKLMGLMQRFGIEPD 290
R EIG + L+ CKG F + F VR ++HL + R+ +K G
Sbjct: 117 RKEIGELAYKLIPCKGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENG---------- 166
Query: 291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLG---RRLMPNRKIYQTMIHYLCQEGDFNLAYI 347
Y L + D+AK +S LG R+ + ++ G F++A
Sbjct: 167 ---YRLWV---------DIAKVYFSPRLGGERARIXKKVSLNDVVVDXFAGVGPFSIA-- 212
Query: 348 MCKDSMKKNWVPSVDTISALLEGLKKN 374
CK++ K + ++D +E LKKN
Sbjct: 213 -CKNAKK---IYAIDINPHAIELLKKN 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,052,595
Number of Sequences: 62578
Number of extensions: 437173
Number of successful extensions: 1332
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 10
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)