Query 015329
Match_columns 409
No_of_seqs 532 out of 2813
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 05:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.5E-59 1.2E-63 451.9 44.2 364 42-406 435-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1E-57 2.2E-62 443.0 46.1 365 44-409 370-767 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.2E-54 1.1E-58 414.0 36.3 351 46-408 89-474 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.6E-52 1E-56 400.5 37.1 350 42-408 121-506 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.2E-50 2.7E-55 399.5 35.8 353 42-408 49-436 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.6E-50 5.7E-55 397.2 36.9 351 42-406 251-667 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 6.1E-22 1.3E-26 199.3 42.2 338 54-404 475-812 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 6.8E-22 1.5E-26 198.9 42.5 337 57-407 546-882 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.5E-22 5.4E-27 182.3 35.3 300 88-395 43-352 (389)
10 PRK11788 tetratricopeptide rep 99.9 9.6E-23 2.1E-27 185.0 32.3 301 54-362 45-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 2.8E-20 6.1E-25 177.2 41.0 348 47-406 45-397 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 3.6E-17 7.9E-22 156.4 40.5 292 54-353 137-494 (615)
13 PRK15174 Vi polysaccharide exp 99.8 7.5E-17 1.6E-21 153.9 39.5 333 54-395 15-352 (656)
14 PRK11447 cellulose synthase su 99.8 1.1E-16 2.3E-21 163.0 40.8 335 53-396 278-706 (1157)
15 KOG4626 O-linked N-acetylgluco 99.8 2.3E-17 5.1E-22 145.2 28.1 336 53-402 125-497 (966)
16 PRK10049 pgaA outer membrane p 99.8 9.8E-16 2.1E-20 149.3 39.9 341 48-396 53-462 (765)
17 TIGR00990 3a0801s09 mitochondr 99.8 2.9E-15 6.3E-20 143.4 38.4 306 83-395 130-501 (615)
18 PRK10049 pgaA outer membrane p 99.8 8.3E-15 1.8E-19 142.9 41.7 343 45-396 16-428 (765)
19 KOG4422 Uncharacterized conser 99.8 4.5E-15 9.7E-20 125.5 33.5 355 29-391 99-552 (625)
20 PRK14574 hmsH outer membrane p 99.8 2.3E-14 4.9E-19 137.7 42.5 335 50-394 40-449 (822)
21 PRK11447 cellulose synthase su 99.8 3.3E-15 7.1E-20 152.3 38.9 323 54-389 361-739 (1157)
22 PRK14574 hmsH outer membrane p 99.7 1.2E-13 2.6E-18 132.8 40.7 336 54-396 112-519 (822)
23 KOG4626 O-linked N-acetylgluco 99.7 2.3E-15 5.1E-20 132.8 26.5 303 55-371 195-500 (966)
24 PRK09782 bacteriophage N4 rece 99.7 2.6E-13 5.7E-18 133.1 40.1 324 58-395 356-711 (987)
25 KOG4422 Uncharacterized conser 99.7 4.6E-14 1E-18 119.5 29.1 319 83-407 119-479 (625)
26 COG2956 Predicted N-acetylgluc 99.7 8.3E-14 1.8E-18 113.8 27.2 293 55-355 46-347 (389)
27 PF13429 TPR_15: Tetratricopep 99.7 2E-16 4.4E-21 136.3 12.2 258 86-351 14-273 (280)
28 PRK10747 putative protoheme IX 99.7 6.3E-13 1.4E-17 119.9 34.3 285 92-390 96-390 (398)
29 PF13429 TPR_15: Tetratricopep 99.7 2.5E-16 5.4E-21 135.8 11.7 261 52-319 16-276 (280)
30 PRK09782 bacteriophage N4 rece 99.7 1.9E-12 4.2E-17 127.1 39.0 330 53-394 385-744 (987)
31 PRK10747 putative protoheme IX 99.7 7E-13 1.5E-17 119.6 32.5 287 56-354 96-389 (398)
32 TIGR00540 hemY_coli hemY prote 99.7 9.5E-13 2E-17 119.4 33.2 291 91-390 95-399 (409)
33 TIGR00540 hemY_coli hemY prote 99.7 8.7E-13 1.9E-17 119.6 31.5 290 56-354 96-398 (409)
34 KOG1126 DNA-binding cell divis 99.7 9.6E-14 2.1E-18 123.9 24.0 290 95-396 334-626 (638)
35 KOG2076 RNA polymerase III tra 99.6 3E-12 6.4E-17 118.2 33.1 326 56-388 151-510 (895)
36 COG2956 Predicted N-acetylgluc 99.6 4E-12 8.8E-17 104.1 26.9 295 83-389 39-346 (389)
37 KOG1155 Anaphase-promoting com 99.6 7.7E-12 1.7E-16 107.3 28.8 288 93-390 240-536 (559)
38 COG3071 HemY Uncharacterized e 99.6 5.9E-11 1.3E-15 100.2 31.9 289 92-392 96-392 (400)
39 COG3071 HemY Uncharacterized e 99.6 6.2E-11 1.3E-15 100.1 30.6 288 56-355 96-390 (400)
40 KOG1126 DNA-binding cell divis 99.6 3.3E-12 7.2E-17 114.3 23.7 280 59-356 334-621 (638)
41 KOG2003 TPR repeat-containing 99.5 2.3E-11 5E-16 104.2 26.8 192 197-394 501-693 (840)
42 TIGR02521 type_IV_pilW type IV 99.5 3.6E-11 7.8E-16 100.8 26.9 203 185-391 30-233 (234)
43 KOG2002 TPR-containing nuclear 99.5 6.3E-11 1.4E-15 110.5 28.6 284 112-401 449-756 (1018)
44 KOG1155 Anaphase-promoting com 99.5 3.8E-10 8.3E-15 97.1 29.2 309 54-392 237-555 (559)
45 TIGR02521 type_IV_pilW type IV 99.5 6.6E-11 1.4E-15 99.2 24.0 200 115-319 31-231 (234)
46 KOG4318 Bicoid mRNA stability 99.4 1.8E-11 3.8E-16 112.9 19.6 253 65-341 11-286 (1088)
47 PF13041 PPR_2: PPR repeat fam 99.4 4.2E-13 9.1E-18 81.8 6.4 49 184-232 1-49 (50)
48 KOG2003 TPR repeat-containing 99.4 3.9E-10 8.5E-15 96.8 26.0 275 90-376 429-709 (840)
49 KOG2076 RNA polymerase III tra 99.4 3.4E-09 7.4E-14 98.5 33.8 335 49-388 177-553 (895)
50 KOG2002 TPR-containing nuclear 99.4 2.5E-09 5.5E-14 100.1 32.9 327 56-390 142-481 (1018)
51 PF12569 NARP1: NMDA receptor- 99.4 1.2E-09 2.5E-14 100.0 30.6 290 52-353 12-332 (517)
52 PF13041 PPR_2: PPR repeat fam 99.4 7E-13 1.5E-17 80.9 6.4 42 258-299 5-46 (50)
53 KOG0495 HAT repeat protein [RN 99.4 1.4E-08 2.9E-13 91.4 35.4 336 49-396 521-886 (913)
54 KOG1129 TPR repeat-containing 99.4 8.1E-11 1.7E-15 96.8 19.6 237 154-398 227-466 (478)
55 PRK12370 invasion protein regu 99.4 3.4E-10 7.4E-15 106.8 26.7 252 129-392 275-537 (553)
56 PRK12370 invasion protein regu 99.4 4.4E-10 9.5E-15 106.0 27.0 233 147-389 253-501 (553)
57 KOG0495 HAT repeat protein [RN 99.4 4.4E-08 9.5E-13 88.3 35.9 332 50-392 412-784 (913)
58 PF12569 NARP1: NMDA receptor- 99.4 3.5E-09 7.5E-14 96.9 29.6 294 87-392 11-336 (517)
59 KOG0547 Translocase of outer m 99.3 4.8E-09 1.1E-13 91.1 27.2 292 54-353 125-489 (606)
60 KOG1129 TPR repeat-containing 99.3 3.8E-10 8.2E-15 92.9 19.1 230 119-355 227-458 (478)
61 KOG1915 Cell cycle control pro 99.3 5.3E-08 1.1E-12 84.5 31.9 321 57-390 86-500 (677)
62 PRK11189 lipoprotein NlpI; Pro 99.3 4.1E-09 8.9E-14 91.2 25.7 95 189-285 67-161 (296)
63 KOG4318 Bicoid mRNA stability 99.3 3.6E-10 7.7E-15 104.5 19.2 251 101-376 11-286 (1088)
64 KOG1173 Anaphase-promoting com 99.2 2.4E-08 5.2E-13 88.4 25.7 273 115-394 244-522 (611)
65 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.8E-13 92.2 23.7 238 116-353 200-477 (508)
66 COG3063 PilF Tfp pilus assembl 99.2 6.1E-08 1.3E-12 76.4 24.0 203 188-394 37-240 (250)
67 KOG1915 Cell cycle control pro 99.2 5.6E-07 1.2E-11 78.3 32.1 330 56-395 153-541 (677)
68 COG3063 PilF Tfp pilus assembl 99.2 3.5E-08 7.5E-13 77.7 22.6 194 120-318 40-234 (250)
69 cd05804 StaR_like StaR_like; a 99.2 3E-07 6.5E-12 82.5 32.4 308 82-394 8-340 (355)
70 KOG0547 Translocase of outer m 99.2 8.7E-08 1.9E-12 83.5 27.0 302 85-393 120-494 (606)
71 KOG1840 Kinesin light chain [C 99.2 4E-08 8.7E-13 89.1 25.9 244 145-388 194-477 (508)
72 PF04733 Coatomer_E: Coatomer 99.2 3.9E-09 8.5E-14 90.1 18.4 253 125-394 11-269 (290)
73 PRK11189 lipoprotein NlpI; Pro 99.2 7.8E-08 1.7E-12 83.3 25.7 225 129-364 40-273 (296)
74 KOG1174 Anaphase-promoting com 99.1 2.5E-07 5.5E-12 79.0 26.9 293 93-395 209-505 (564)
75 KOG1173 Anaphase-promoting com 99.1 1.3E-07 2.8E-12 83.9 26.0 285 79-373 243-534 (611)
76 KOG2047 mRNA splicing factor [ 99.1 2.7E-06 5.8E-11 77.0 33.3 100 294-394 480-583 (835)
77 PF04733 Coatomer_E: Coatomer 99.1 2E-08 4.2E-13 85.8 18.6 80 272-353 183-263 (290)
78 KOG1156 N-terminal acetyltrans 99.1 2.4E-06 5.2E-11 77.3 31.9 96 294-392 374-470 (700)
79 KOG2047 mRNA splicing factor [ 99.1 3.5E-06 7.6E-11 76.2 32.3 341 43-392 137-617 (835)
80 KOG3785 Uncharacterized conser 99.1 5.9E-07 1.3E-11 75.4 25.7 88 51-141 29-117 (557)
81 KOG1174 Anaphase-promoting com 99.1 7.7E-07 1.7E-11 76.2 26.5 289 58-356 210-501 (564)
82 cd05804 StaR_like StaR_like; a 99.0 9.5E-07 2.1E-11 79.3 29.0 91 156-248 120-213 (355)
83 KOG2376 Signal recognition par 99.0 1.3E-05 2.9E-10 71.9 32.1 113 293-408 378-504 (652)
84 KOG4340 Uncharacterized conser 98.9 9.6E-07 2.1E-11 72.4 22.0 291 47-351 13-335 (459)
85 KOG1125 TPR repeat-containing 98.9 3.8E-07 8.3E-12 81.3 21.2 237 35-282 276-524 (579)
86 KOG0548 Molecular co-chaperone 98.9 4.7E-06 1E-10 73.9 27.6 202 189-394 227-459 (539)
87 KOG4162 Predicted calmodulin-b 98.9 1.3E-05 2.9E-10 74.1 31.3 345 45-396 324-789 (799)
88 KOG4340 Uncharacterized conser 98.9 1.1E-06 2.4E-11 72.1 21.5 293 82-387 12-336 (459)
89 PRK04841 transcriptional regul 98.9 1.9E-05 4.2E-10 80.2 34.4 310 85-394 414-764 (903)
90 KOG1156 N-terminal acetyltrans 98.8 6.5E-05 1.4E-09 68.4 32.0 329 56-394 53-438 (700)
91 PF12854 PPR_1: PPR repeat 98.8 5.4E-09 1.2E-13 57.1 4.1 30 287-316 3-32 (34)
92 KOG1128 Uncharacterized conser 98.8 3.3E-06 7.2E-11 77.5 23.6 231 120-373 403-635 (777)
93 KOG1070 rRNA processing protei 98.8 8.3E-06 1.8E-10 80.1 27.0 249 133-387 1443-1697(1710)
94 PF12854 PPR_1: PPR repeat 98.8 9.6E-09 2.1E-13 56.2 4.2 32 321-352 2-33 (34)
95 TIGR03302 OM_YfiO outer membra 98.8 2.1E-06 4.5E-11 72.1 20.4 189 184-392 31-234 (235)
96 PLN02789 farnesyltranstransfer 98.8 1.5E-05 3.3E-10 69.2 25.9 144 120-268 42-188 (320)
97 KOG0624 dsRNA-activated protei 98.8 5.6E-05 1.2E-09 63.6 27.0 307 54-394 48-374 (504)
98 PRK10370 formate-dependent nit 98.8 4.5E-06 9.8E-11 67.4 20.2 119 234-355 52-173 (198)
99 PRK14720 transcript cleavage f 98.7 1.4E-05 3E-10 77.5 26.3 170 78-285 29-198 (906)
100 PRK04841 transcriptional regul 98.7 5.3E-05 1.1E-09 77.0 32.5 302 89-390 383-720 (903)
101 KOG4162 Predicted calmodulin-b 98.7 7.6E-05 1.6E-09 69.3 29.2 206 76-284 319-541 (799)
102 KOG1128 Uncharacterized conser 98.7 7.9E-06 1.7E-10 75.1 22.7 240 77-338 395-635 (777)
103 PRK10370 formate-dependent nit 98.7 6.4E-06 1.4E-10 66.5 20.2 124 269-395 52-178 (198)
104 PLN02789 farnesyltranstransfer 98.7 1.9E-05 4.2E-10 68.5 24.3 213 153-373 40-267 (320)
105 KOG3081 Vesicle coat complex C 98.7 1.3E-05 2.8E-10 64.9 20.4 155 228-393 115-274 (299)
106 KOG0985 Vesicle coat protein c 98.7 7.7E-05 1.7E-09 71.3 28.2 300 48-390 988-1308(1666)
107 TIGR03302 OM_YfiO outer membra 98.7 7E-06 1.5E-10 68.9 20.0 189 147-355 30-232 (235)
108 KOG3081 Vesicle coat complex C 98.7 9.4E-05 2E-09 60.1 24.7 251 88-355 16-271 (299)
109 KOG1070 rRNA processing protei 98.7 2.9E-05 6.3E-10 76.5 25.7 224 114-344 1457-1689(1710)
110 KOG3785 Uncharacterized conser 98.6 0.00015 3.2E-09 61.4 25.7 161 87-250 29-214 (557)
111 KOG1914 mRNA cleavage and poly 98.6 0.00038 8.2E-09 62.3 32.3 148 256-406 366-520 (656)
112 PRK14720 transcript cleavage f 98.6 5.6E-05 1.2E-09 73.4 25.8 232 114-372 30-268 (906)
113 KOG1125 TPR repeat-containing 98.6 1.2E-05 2.6E-10 72.0 19.4 255 121-384 291-565 (579)
114 KOG2053 Mitochondrial inherita 98.6 0.00068 1.5E-08 64.3 33.7 189 56-251 21-256 (932)
115 COG5010 TadD Flp pilus assembl 98.6 3.7E-05 7.9E-10 62.3 20.1 123 189-314 103-225 (257)
116 KOG2376 Signal recognition par 98.6 0.00055 1.2E-08 62.0 32.1 127 257-387 377-517 (652)
117 COG5010 TadD Flp pilus assembl 98.6 1.8E-05 3.9E-10 64.1 18.0 165 79-249 66-230 (257)
118 PRK15359 type III secretion sy 98.6 4.2E-06 9.1E-11 63.9 13.8 97 296-394 29-125 (144)
119 KOG0624 dsRNA-activated protei 98.5 0.00039 8.4E-09 58.7 26.7 267 44-320 69-370 (504)
120 KOG0548 Molecular co-chaperone 98.5 0.00023 5.1E-09 63.5 25.4 336 54-400 12-431 (539)
121 PRK15179 Vi polysaccharide bio 98.5 0.00013 2.9E-09 70.0 25.2 147 218-368 83-229 (694)
122 KOG0985 Vesicle coat protein c 98.5 0.00082 1.8E-08 64.7 28.7 303 40-388 1016-1339(1666)
123 COG4783 Putative Zn-dependent 98.5 0.00021 4.6E-09 63.2 23.4 185 184-393 272-457 (484)
124 PRK15359 type III secretion sy 98.5 4E-05 8.6E-10 58.5 16.9 93 261-355 29-121 (144)
125 KOG2053 Mitochondrial inherita 98.4 0.00024 5.2E-09 67.2 24.7 223 126-356 20-256 (932)
126 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.6E-10 60.9 14.0 104 291-396 17-120 (135)
127 KOG3060 Uncharacterized conser 98.4 0.00041 8.9E-09 56.1 22.4 188 163-355 25-220 (289)
128 KOG3617 WD40 and TPR repeat-co 98.4 0.00026 5.7E-09 66.4 24.0 229 55-318 739-994 (1416)
129 KOG3060 Uncharacterized conser 98.4 0.00017 3.7E-09 58.2 19.4 190 56-250 24-220 (289)
130 PRK15179 Vi polysaccharide bio 98.4 0.00032 6.9E-09 67.5 25.1 236 114-373 27-267 (694)
131 COG4783 Putative Zn-dependent 98.3 0.0015 3.3E-08 58.0 25.0 116 196-315 316-432 (484)
132 KOG3616 Selective LIM binding 98.3 0.00082 1.8E-08 62.5 24.1 190 54-279 716-905 (1636)
133 TIGR02552 LcrH_SycD type III s 98.3 7.4E-05 1.6E-09 56.6 15.1 17 300-316 94-110 (135)
134 KOG3616 Selective LIM binding 98.3 0.00027 5.8E-09 65.6 20.3 107 195-314 741-847 (1636)
135 TIGR00756 PPR pentatricopeptid 98.3 1.9E-06 4.1E-11 47.8 4.5 33 188-220 2-34 (35)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 8E-05 1.7E-09 66.1 16.5 116 228-350 176-292 (395)
137 PF13812 PPR_3: Pentatricopept 98.3 1.8E-06 4E-11 47.5 4.1 32 188-219 3-34 (34)
138 PF10037 MRP-S27: Mitochondria 98.3 2.2E-05 4.8E-10 69.9 12.9 122 183-304 63-186 (429)
139 TIGR00756 PPR pentatricopeptid 98.3 2.1E-06 4.6E-11 47.5 4.4 31 259-289 3-33 (35)
140 PF09976 TPR_21: Tetratricopep 98.2 0.00015 3.1E-09 55.6 15.7 128 257-387 13-144 (145)
141 PF10037 MRP-S27: Mitochondria 98.2 2.5E-05 5.4E-10 69.6 12.5 125 215-339 60-186 (429)
142 PF04840 Vps16_C: Vps16, C-ter 98.2 0.003 6.5E-08 54.9 26.1 124 256-399 177-309 (319)
143 KOG3617 WD40 and TPR repeat-co 98.2 0.00026 5.5E-09 66.5 18.3 240 78-352 724-993 (1416)
144 PF08579 RPM2: Mitochondrial r 98.2 3.7E-05 7.9E-10 53.8 9.9 38 195-232 34-72 (120)
145 PF08579 RPM2: Mitochondrial r 98.2 3.9E-05 8.5E-10 53.6 9.9 79 225-303 29-116 (120)
146 KOG1127 TPR repeat-containing 98.2 0.00039 8.4E-09 66.7 19.3 183 59-249 473-658 (1238)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00029 6.3E-09 62.6 17.4 127 187-320 170-297 (395)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00035 7.6E-09 53.5 15.7 115 234-351 24-143 (145)
149 KOG1914 mRNA cleavage and poly 98.1 0.0066 1.4E-07 54.7 27.3 111 292-404 367-480 (656)
150 cd00189 TPR Tetratricopeptide 98.1 0.00013 2.8E-09 50.9 11.6 94 296-391 5-98 (100)
151 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00018 3.8E-09 53.0 12.6 102 293-394 4-109 (119)
152 PRK10866 outer membrane biogen 98.0 0.0032 6.9E-08 52.7 20.6 182 188-389 34-240 (243)
153 PF14938 SNAP: Soluble NSF att 98.0 0.0011 2.4E-08 57.1 18.4 199 189-391 38-264 (282)
154 PF05843 Suf: Suppressor of fo 98.0 0.00038 8.3E-09 59.7 14.6 133 258-393 3-139 (280)
155 PF01535 PPR: PPR repeat; Int 98.0 1.3E-05 2.8E-10 42.9 3.5 29 188-216 2-30 (31)
156 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.3E-10 42.6 3.4 19 262-280 6-24 (31)
157 PF12895 Apc3: Anaphase-promot 97.9 2.6E-05 5.6E-10 53.4 5.3 81 304-386 2-83 (84)
158 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00086 1.9E-08 49.2 13.9 98 258-355 4-105 (119)
159 cd00189 TPR Tetratricopeptide 97.9 0.00041 8.8E-09 48.3 11.5 92 190-283 4-95 (100)
160 PF06239 ECSIT: Evolutionarily 97.9 0.00045 9.7E-09 54.8 12.0 86 220-305 46-152 (228)
161 PF06239 ECSIT: Evolutionarily 97.8 0.00024 5.3E-09 56.3 9.9 88 185-272 46-154 (228)
162 PRK02603 photosystem I assembl 97.8 0.0017 3.6E-08 51.4 14.4 88 257-345 36-125 (172)
163 PRK02603 photosystem I assembl 97.8 0.0032 7E-08 49.8 16.0 88 186-274 35-124 (172)
164 PLN03088 SGT1, suppressor of 97.8 0.00084 1.8E-08 59.8 13.9 102 263-368 9-110 (356)
165 PF05843 Suf: Suppressor of fo 97.8 0.0006 1.3E-08 58.5 12.6 132 82-215 3-136 (280)
166 PRK15363 pathogenicity island 97.7 0.0017 3.6E-08 49.2 12.9 92 261-354 40-131 (157)
167 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.3E-09 50.3 6.1 81 269-351 2-83 (84)
168 KOG1127 TPR repeat-containing 97.7 0.0078 1.7E-07 58.2 20.0 164 186-354 492-658 (1238)
169 PF04840 Vps16_C: Vps16, C-ter 97.7 0.029 6.3E-07 48.9 23.8 126 223-374 179-304 (319)
170 PF13432 TPR_16: Tetratricopep 97.7 0.00024 5.3E-09 45.7 6.8 61 333-394 4-64 (65)
171 CHL00033 ycf3 photosystem I as 97.7 0.0018 4E-08 51.0 13.0 64 257-320 36-101 (168)
172 PRK15363 pathogenicity island 97.7 0.0028 6E-08 48.1 12.9 94 296-391 40-133 (157)
173 PLN03088 SGT1, suppressor of 97.6 0.0026 5.7E-08 56.7 14.9 87 160-249 12-98 (356)
174 PF13414 TPR_11: TPR repeat; P 97.6 0.00035 7.6E-09 45.6 6.9 67 325-392 2-69 (69)
175 PRK10153 DNA-binding transcrip 97.6 0.011 2.3E-07 55.4 18.9 140 252-395 333-487 (517)
176 CHL00033 ycf3 photosystem I as 97.6 0.0039 8.5E-08 49.1 14.0 122 273-395 16-154 (168)
177 PRK10866 outer membrane biogen 97.6 0.034 7.3E-07 46.6 19.7 57 296-352 180-238 (243)
178 COG4235 Cytochrome c biogenesi 97.5 0.011 2.3E-07 49.7 15.8 106 290-397 155-263 (287)
179 PRK10803 tol-pal system protei 97.5 0.0025 5.3E-08 53.9 12.3 102 292-395 144-251 (263)
180 KOG0550 Molecular chaperone (D 97.5 0.021 4.6E-07 49.9 17.6 53 195-250 178-232 (486)
181 KOG0553 TPR repeat-containing 97.5 0.0013 2.8E-08 54.7 10.0 101 264-368 89-189 (304)
182 COG4700 Uncharacterized protei 97.5 0.025 5.5E-07 43.8 15.9 152 50-207 62-214 (251)
183 KOG2796 Uncharacterized conser 97.5 0.023 5.1E-07 46.5 16.5 141 224-367 180-325 (366)
184 PF14559 TPR_19: Tetratricopep 97.5 0.00044 9.6E-09 45.0 5.9 55 338-393 3-57 (68)
185 PF13525 YfiO: Outer membrane 97.4 0.037 8.1E-07 45.1 18.1 182 191-381 10-198 (203)
186 PF14559 TPR_19: Tetratricopep 97.4 0.00054 1.2E-08 44.5 5.8 52 92-144 3-54 (68)
187 PRK10153 DNA-binding transcrip 97.4 0.015 3.3E-07 54.4 17.0 64 290-355 419-482 (517)
188 PF14938 SNAP: Soluble NSF att 97.4 0.012 2.7E-07 50.7 15.4 149 201-351 89-262 (282)
189 PF12688 TPR_5: Tetratrico pep 97.4 0.017 3.6E-07 42.2 13.6 89 193-283 8-102 (120)
190 PF12688 TPR_5: Tetratrico pep 97.3 0.014 3E-07 42.6 12.7 88 264-353 9-102 (120)
191 KOG0553 TPR repeat-containing 97.3 0.0024 5.3E-08 53.2 9.8 99 54-157 91-189 (304)
192 PF12921 ATP13: Mitochondrial 97.2 0.013 2.8E-07 43.2 11.8 100 115-235 2-102 (126)
193 KOG2280 Vacuolar assembly/sort 97.2 0.22 4.7E-06 47.3 23.9 311 48-384 441-793 (829)
194 PF13432 TPR_16: Tetratricopep 97.2 0.0028 6.2E-08 40.6 7.1 55 194-249 5-59 (65)
195 KOG2796 Uncharacterized conser 97.1 0.027 5.8E-07 46.2 13.5 142 188-332 179-325 (366)
196 PF13525 YfiO: Outer membrane 97.1 0.095 2.1E-06 42.7 17.3 49 297-345 147-197 (203)
197 PF03704 BTAD: Bacterial trans 97.1 0.021 4.5E-07 43.7 12.7 70 258-328 64-138 (146)
198 PF12921 ATP13: Mitochondrial 97.1 0.013 2.8E-07 43.2 10.8 81 256-336 2-98 (126)
199 PF13371 TPR_9: Tetratricopept 97.1 0.0026 5.7E-08 42.0 6.5 60 334-394 3-62 (73)
200 PF13414 TPR_11: TPR repeat; P 97.1 0.0033 7.1E-08 40.9 6.8 63 186-249 3-66 (69)
201 PRK10803 tol-pal system protei 97.1 0.016 3.5E-07 49.0 12.4 97 259-355 146-246 (263)
202 COG4700 Uncharacterized protei 97.0 0.11 2.4E-06 40.5 18.4 131 218-350 86-217 (251)
203 KOG1130 Predicted G-alpha GTPa 96.9 0.02 4.4E-07 50.0 11.6 132 257-388 196-342 (639)
204 COG4235 Cytochrome c biogenesi 96.9 0.099 2.2E-06 44.1 15.3 102 253-356 153-257 (287)
205 KOG2041 WD40 repeat protein [G 96.9 0.042 9E-07 51.4 13.8 206 112-351 689-903 (1189)
206 PF13281 DUF4071: Domain of un 96.9 0.3 6.6E-06 43.2 19.4 79 189-267 144-228 (374)
207 PF03704 BTAD: Bacterial trans 96.8 0.018 3.9E-07 44.1 10.0 72 293-365 64-140 (146)
208 smart00299 CLH Clathrin heavy 96.7 0.17 3.6E-06 38.4 15.3 41 192-233 13-53 (140)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.42 9E-06 42.7 26.8 134 257-394 398-535 (660)
210 PRK15331 chaperone protein Sic 96.7 0.1 2.3E-06 39.9 12.7 87 266-354 47-133 (165)
211 COG1729 Uncharacterized protei 96.7 0.053 1.1E-06 45.0 11.9 105 293-398 144-252 (262)
212 PF09205 DUF1955: Domain of un 96.6 0.16 3.4E-06 37.1 14.3 141 125-288 12-152 (161)
213 KOG1538 Uncharacterized conser 96.6 0.42 9.1E-06 44.7 18.3 244 77-354 553-845 (1081)
214 KOG2280 Vacuolar assembly/sort 96.6 0.7 1.5E-05 44.0 23.6 284 85-387 442-770 (829)
215 PRK15331 chaperone protein Sic 96.6 0.22 4.8E-06 38.2 14.5 86 232-319 48-133 (165)
216 PF13371 TPR_9: Tetratricopept 96.6 0.022 4.7E-07 37.4 7.8 55 300-355 4-58 (73)
217 PF13170 DUF4003: Protein of u 96.5 0.26 5.7E-06 42.5 15.9 130 131-262 78-223 (297)
218 KOG1130 Predicted G-alpha GTPa 96.5 0.032 6.9E-07 48.8 10.0 130 223-352 197-341 (639)
219 PF13424 TPR_12: Tetratricopep 96.5 0.01 2.3E-07 39.6 5.8 22 295-316 9-30 (78)
220 PF04053 Coatomer_WDAD: Coatom 96.5 0.16 3.4E-06 46.6 14.9 159 88-281 269-427 (443)
221 PF13424 TPR_12: Tetratricopep 96.4 0.011 2.3E-07 39.6 5.7 64 326-389 5-74 (78)
222 PF10300 DUF3808: Protein of u 96.4 0.44 9.5E-06 44.4 17.4 163 224-389 191-375 (468)
223 KOG2041 WD40 repeat protein [G 96.4 0.97 2.1E-05 42.9 23.3 292 58-384 748-1080(1189)
224 PF09205 DUF1955: Domain of un 96.4 0.25 5.5E-06 36.1 13.9 139 232-392 13-151 (161)
225 COG3118 Thioredoxin domain-con 96.3 0.1 2.2E-06 43.8 11.6 150 87-244 141-295 (304)
226 KOG3941 Intermediate in Toll s 96.3 0.11 2.4E-06 43.3 11.2 51 183-233 64-119 (406)
227 COG3118 Thioredoxin domain-con 96.2 0.48 1E-05 40.0 14.9 208 61-279 84-295 (304)
228 KOG3941 Intermediate in Toll s 96.2 0.055 1.2E-06 44.9 9.3 106 147-272 64-174 (406)
229 COG4105 ComL DNA uptake lipopr 96.1 0.63 1.4E-05 38.5 21.3 189 188-394 37-237 (254)
230 KOG0550 Molecular chaperone (D 96.1 0.92 2E-05 40.2 20.2 254 54-320 59-350 (486)
231 PF04053 Coatomer_WDAD: Coatom 96.0 0.46 9.9E-06 43.7 15.3 57 290-355 346-402 (443)
232 PF13281 DUF4071: Domain of un 96.0 1.1 2.3E-05 39.9 20.6 102 112-214 138-254 (374)
233 PF04184 ST7: ST7 protein; In 96.0 0.23 5E-06 45.0 12.7 59 155-213 264-322 (539)
234 PF08631 SPO22: Meiosis protei 96.0 0.94 2E-05 39.0 24.9 101 187-290 85-191 (278)
235 PF04184 ST7: ST7 protein; In 95.9 1.3 2.8E-05 40.4 17.8 189 195-398 177-383 (539)
236 COG4649 Uncharacterized protei 95.9 0.57 1.2E-05 36.1 14.0 125 54-179 68-196 (221)
237 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.24 5.1E-06 44.7 12.6 65 254-320 73-141 (453)
238 KOG1920 IkappaB kinase complex 95.7 1.9 4.1E-05 43.6 18.8 101 232-350 950-1050(1265)
239 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.26 5.6E-06 44.4 12.1 63 186-250 75-141 (453)
240 PF13512 TPR_18: Tetratricopep 95.6 0.55 1.2E-05 35.2 11.6 113 265-395 19-133 (142)
241 PF10300 DUF3808: Protein of u 95.6 0.38 8.3E-06 44.8 13.4 164 83-249 191-375 (468)
242 smart00299 CLH Clathrin heavy 95.6 0.71 1.5E-05 34.9 15.3 126 225-373 11-137 (140)
243 PF13170 DUF4003: Protein of u 95.5 1.5 3.3E-05 37.9 19.4 132 202-335 78-226 (297)
244 KOG4555 TPR repeat-containing 95.4 0.42 9.1E-06 34.9 10.0 52 302-354 54-105 (175)
245 COG5107 RNA14 Pre-mRNA 3'-end 95.3 2 4.4E-05 38.6 20.3 146 186-337 397-546 (660)
246 KOG1538 Uncharacterized conser 95.3 2.6 5.6E-05 39.8 17.2 118 192-320 709-846 (1081)
247 KOG2610 Uncharacterized conser 95.3 0.93 2E-05 39.0 13.3 154 197-353 114-274 (491)
248 PF13512 TPR_18: Tetratricopep 95.3 0.54 1.2E-05 35.2 10.7 80 299-378 18-99 (142)
249 PF07079 DUF1347: Protein of u 95.3 2.2 4.7E-05 38.5 24.1 75 319-395 253-332 (549)
250 KOG0543 FKBP-type peptidyl-pro 95.2 0.42 9.1E-06 42.1 11.4 128 262-392 214-357 (397)
251 KOG4555 TPR repeat-containing 95.2 0.86 1.9E-05 33.4 11.8 93 194-287 51-146 (175)
252 COG0457 NrfG FOG: TPR repeat [ 95.1 1.5 3.3E-05 35.9 29.4 202 188-392 61-267 (291)
253 COG1729 Uncharacterized protei 94.9 0.45 9.8E-06 39.7 10.4 92 53-144 150-244 (262)
254 KOG2114 Vacuolar assembly/sort 94.8 1.2 2.5E-05 43.3 13.8 247 119-393 338-593 (933)
255 PF13428 TPR_14: Tetratricopep 94.7 0.076 1.6E-06 30.8 4.1 33 363-395 3-35 (44)
256 KOG2114 Vacuolar assembly/sort 94.7 1.7 3.7E-05 42.2 14.6 177 82-282 336-516 (933)
257 COG3898 Uncharacterized membra 94.6 3 6.5E-05 36.9 32.3 309 58-390 67-392 (531)
258 PF13428 TPR_14: Tetratricopep 94.6 0.17 3.6E-06 29.3 5.4 28 117-144 3-30 (44)
259 PF13929 mRNA_stabil: mRNA sta 94.6 2.6 5.5E-05 35.8 16.6 64 217-280 198-262 (292)
260 KOG0543 FKBP-type peptidyl-pro 94.5 1.3 2.7E-05 39.3 12.5 127 226-355 213-355 (397)
261 KOG1585 Protein required for f 94.4 2.4 5.3E-05 34.9 16.7 91 294-385 153-251 (308)
262 COG3629 DnrI DNA-binding trans 94.4 0.72 1.6E-05 39.1 10.5 61 257-318 154-214 (280)
263 COG3629 DnrI DNA-binding trans 94.3 0.7 1.5E-05 39.2 10.2 79 291-370 153-236 (280)
264 KOG1920 IkappaB kinase complex 94.2 7.3 0.00016 39.7 20.9 116 253-386 932-1051(1265)
265 PF02284 COX5A: Cytochrome c o 94.1 1.3 2.8E-05 30.8 10.0 48 344-391 28-75 (108)
266 COG2909 MalT ATP-dependent tra 94.1 6.4 0.00014 38.8 23.2 226 123-351 423-684 (894)
267 PF07163 Pex26: Pex26 protein; 94.1 0.77 1.7E-05 38.4 9.8 125 49-173 40-181 (309)
268 PF08631 SPO22: Meiosis protei 94.0 3.6 7.7E-05 35.4 25.2 164 222-388 85-273 (278)
269 PF02259 FAT: FAT domain; Int 93.8 4.6 0.0001 36.0 20.5 65 255-319 145-212 (352)
270 KOG1550 Extracellular protein 93.8 4.9 0.00011 38.6 16.3 184 166-356 228-427 (552)
271 KOG1585 Protein required for f 93.8 3.3 7.1E-05 34.2 14.5 195 186-406 31-238 (308)
272 PF00637 Clathrin: Region in C 93.7 0.0015 3.3E-08 49.9 -6.0 82 228-316 14-95 (143)
273 PF07035 Mic1: Colon cancer-as 93.7 2.6 5.7E-05 32.7 14.9 134 136-284 15-148 (167)
274 PRK09687 putative lyase; Provi 93.6 4.2 9.2E-05 35.0 29.6 236 147-408 34-279 (280)
275 KOG4570 Uncharacterized conser 93.6 1.2 2.5E-05 38.1 10.1 47 236-282 115-161 (418)
276 PF10602 RPN7: 26S proteasome 93.5 1.6 3.6E-05 34.5 10.7 63 187-249 37-101 (177)
277 KOG4570 Uncharacterized conser 93.5 1.3 2.9E-05 37.7 10.4 127 192-320 25-164 (418)
278 cd00923 Cyt_c_Oxidase_Va Cytoc 93.5 0.65 1.4E-05 31.9 6.9 45 309-353 25-69 (103)
279 KOG2610 Uncharacterized conser 93.4 4.9 0.00011 34.9 15.0 156 162-320 115-276 (491)
280 PF13176 TPR_7: Tetratricopept 93.4 0.23 5E-06 27.2 4.1 25 189-213 2-26 (36)
281 KOG1941 Acetylcholine receptor 93.3 3.7 8.1E-05 35.9 12.9 230 89-318 15-273 (518)
282 COG3898 Uncharacterized membra 93.2 5.8 0.00013 35.2 29.8 286 56-355 96-392 (531)
283 KOG1941 Acetylcholine receptor 93.1 5.6 0.00012 34.9 19.0 230 53-283 15-273 (518)
284 PF07719 TPR_2: Tetratricopept 93.1 0.36 7.8E-06 25.7 4.6 31 363-393 3-33 (34)
285 PF07035 Mic1: Colon cancer-as 92.9 3.6 7.8E-05 32.0 14.8 134 242-389 15-148 (167)
286 KOG2066 Vacuolar assembly/sort 92.5 11 0.00024 36.7 23.9 157 49-213 361-532 (846)
287 PF13176 TPR_7: Tetratricopept 92.4 0.37 8.1E-06 26.3 4.0 22 330-351 3-24 (36)
288 PF13929 mRNA_stabil: mRNA sta 92.3 6.4 0.00014 33.5 22.7 136 272-407 144-289 (292)
289 PF00515 TPR_1: Tetratricopept 92.3 0.52 1.1E-05 25.2 4.5 31 363-393 3-33 (34)
290 COG0457 NrfG FOG: TPR repeat [ 92.1 5.7 0.00012 32.3 28.7 224 129-355 37-265 (291)
291 PRK11906 transcriptional regul 92.0 9.7 0.00021 34.8 15.9 159 222-386 252-432 (458)
292 COG4105 ComL DNA uptake lipopr 91.9 6.6 0.00014 32.7 21.1 56 296-351 172-229 (254)
293 PF13174 TPR_6: Tetratricopept 91.8 0.31 6.8E-06 25.7 3.3 29 365-393 4-32 (33)
294 PF09613 HrpB1_HrpK: Bacterial 91.8 4.8 0.0001 31.0 11.7 111 264-382 18-130 (160)
295 PF10602 RPN7: 26S proteasome 91.8 3.3 7.2E-05 32.8 10.3 97 292-388 37-140 (177)
296 PF09613 HrpB1_HrpK: Bacterial 91.6 5.1 0.00011 30.8 11.7 72 88-162 18-89 (160)
297 PF11207 DUF2989: Protein of u 91.1 3.1 6.7E-05 33.3 9.2 72 274-346 124-198 (203)
298 PRK11906 transcriptional regul 91.0 12 0.00027 34.2 16.9 79 239-319 322-400 (458)
299 TIGR03504 FimV_Cterm FimV C-te 90.8 0.43 9.3E-06 27.5 3.2 25 367-391 5-29 (44)
300 COG4649 Uncharacterized protei 90.5 6.9 0.00015 30.5 15.2 88 302-389 105-195 (221)
301 PRK15180 Vi polysaccharide bio 90.2 15 0.00032 33.7 13.5 123 194-320 297-420 (831)
302 PF13762 MNE1: Mitochondrial s 90.0 6 0.00013 29.9 9.5 80 189-268 42-127 (145)
303 PF13431 TPR_17: Tetratricopep 89.5 0.51 1.1E-05 25.4 2.8 24 358-381 10-33 (34)
304 PF13374 TPR_10: Tetratricopep 89.4 1.1 2.4E-05 25.1 4.4 28 187-214 3-30 (42)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 3.8 8.2E-05 28.3 7.2 46 274-319 25-70 (103)
306 PF02284 COX5A: Cytochrome c o 89.2 5.9 0.00013 27.7 8.2 49 133-181 28-76 (108)
307 KOG0890 Protein kinase of the 89.1 43 0.00093 37.5 24.1 147 55-210 1394-1542(2382)
308 COG2976 Uncharacterized protei 89.0 10 0.00022 30.2 14.6 131 256-393 54-191 (207)
309 PF07079 DUF1347: Protein of u 88.5 19 0.00042 32.8 30.2 351 44-402 77-536 (549)
310 KOG1550 Extracellular protein 88.5 24 0.00053 33.9 22.4 49 60-108 228-277 (552)
311 PF13374 TPR_10: Tetratricopep 88.4 1.4 3.1E-05 24.6 4.4 25 328-352 4-28 (42)
312 COG1747 Uncharacterized N-term 88.0 23 0.00049 33.0 21.1 162 187-355 67-234 (711)
313 KOG4234 TPR repeat-containing 87.9 5.2 0.00011 31.9 8.2 92 264-356 103-198 (271)
314 KOG4077 Cytochrome c oxidase, 87.9 3.4 7.3E-05 30.1 6.5 38 314-351 72-109 (149)
315 PF13431 TPR_17: Tetratricopep 87.9 0.8 1.7E-05 24.7 2.8 21 325-345 12-32 (34)
316 PF13181 TPR_8: Tetratricopept 87.8 1.4 3E-05 23.4 3.9 30 363-392 3-32 (34)
317 KOG4648 Uncharacterized conser 87.2 2.2 4.7E-05 36.9 6.3 78 264-351 105-183 (536)
318 PF00515 TPR_1: Tetratricopept 87.2 2.2 4.7E-05 22.6 4.4 27 188-214 3-29 (34)
319 KOG0276 Vesicle coat complex C 86.9 13 0.00028 35.2 11.2 97 198-315 649-745 (794)
320 PF02259 FAT: FAT domain; Int 86.6 23 0.0005 31.6 21.9 67 219-285 144-213 (352)
321 PF00637 Clathrin: Region in C 86.2 0.62 1.3E-05 35.4 2.5 51 88-138 15-65 (143)
322 KOG3807 Predicted membrane pro 86.1 11 0.00023 32.7 9.7 56 159-214 284-339 (556)
323 PF11207 DUF2989: Protein of u 86.1 11 0.00024 30.2 9.3 79 301-381 117-198 (203)
324 PF07719 TPR_2: Tetratricopept 85.6 2.9 6.2E-05 22.0 4.4 27 188-214 3-29 (34)
325 TIGR02561 HrpB1_HrpK type III 84.0 17 0.00036 27.7 11.7 17 198-214 56-72 (153)
326 KOG0276 Vesicle coat complex C 83.8 18 0.0004 34.2 10.7 99 232-351 648-746 (794)
327 KOG2063 Vacuolar assembly/sort 83.1 56 0.0012 33.1 17.0 26 153-178 507-532 (877)
328 PF13181 TPR_8: Tetratricopept 83.0 4.3 9.3E-05 21.3 4.3 27 188-214 3-29 (34)
329 PF07163 Pex26: Pex26 protein; 82.9 25 0.00053 29.9 10.2 88 155-244 88-181 (309)
330 TIGR02561 HrpB1_HrpK type III 82.9 19 0.0004 27.4 11.0 53 267-321 21-74 (153)
331 COG4455 ImpE Protein of avirul 81.9 13 0.00028 30.3 8.0 77 293-370 3-81 (273)
332 PRK09687 putative lyase; Provi 80.9 36 0.00077 29.4 27.9 136 220-371 141-277 (280)
333 PHA02875 ankyrin repeat protei 80.9 46 0.00099 30.6 14.0 76 90-173 9-88 (413)
334 PF13762 MNE1: Mitochondrial s 80.5 23 0.00049 26.9 10.5 79 260-338 43-127 (145)
335 COG1747 Uncharacterized N-term 79.7 54 0.0012 30.7 23.8 165 114-286 65-235 (711)
336 TIGR03504 FimV_Cterm FimV C-te 79.5 5.3 0.00012 23.0 3.9 23 297-319 5-27 (44)
337 PF07721 TPR_4: Tetratricopept 79.4 3.7 8E-05 20.3 3.0 18 121-138 7-24 (26)
338 smart00028 TPR Tetratricopepti 79.1 5 0.00011 20.0 3.8 26 365-390 5-30 (34)
339 COG4785 NlpI Lipoprotein NlpI, 78.8 35 0.00075 28.0 16.0 66 183-249 95-161 (297)
340 PRK10564 maltose regulon perip 78.3 6.3 0.00014 33.7 5.6 45 181-225 251-296 (303)
341 PF04097 Nic96: Nup93/Nic96; 77.7 74 0.0016 31.2 19.4 86 230-320 267-356 (613)
342 PF14853 Fis1_TPR_C: Fis1 C-te 77.5 7.4 0.00016 23.5 4.3 29 366-394 6-34 (53)
343 COG3947 Response regulator con 77.3 46 0.001 28.6 15.2 58 329-387 282-339 (361)
344 PF13934 ELYS: Nuclear pore co 77.2 32 0.0007 28.5 9.5 123 78-208 76-198 (226)
345 KOG4234 TPR repeat-containing 77.1 37 0.0008 27.4 10.1 90 195-285 104-197 (271)
346 KOG3364 Membrane protein invol 77.0 28 0.00061 26.0 8.9 70 325-394 31-104 (149)
347 COG4785 NlpI Lipoprotein NlpI, 76.9 40 0.00086 27.6 13.1 164 114-287 98-268 (297)
348 COG2976 Uncharacterized protei 76.9 37 0.0008 27.2 13.9 93 157-251 96-189 (207)
349 PF11846 DUF3366: Domain of un 76.8 15 0.00032 29.6 7.4 35 358-392 141-175 (193)
350 KOG2066 Vacuolar assembly/sort 76.3 84 0.0018 31.1 24.9 152 87-248 363-532 (846)
351 KOG4648 Uncharacterized conser 75.4 24 0.00052 30.9 8.3 87 195-284 106-193 (536)
352 PRK15180 Vi polysaccharide bio 75.2 70 0.0015 29.6 13.8 88 160-250 333-420 (831)
353 COG4455 ImpE Protein of avirul 75.0 45 0.00098 27.3 10.3 78 82-160 3-82 (273)
354 PF11848 DUF3368: Domain of un 75.0 15 0.00032 21.7 5.1 34 196-229 12-45 (48)
355 PF14689 SPOB_a: Sensor_kinase 74.8 8.2 0.00018 24.3 4.2 26 363-388 25-50 (62)
356 PF11848 DUF3368: Domain of un 74.0 14 0.00031 21.7 4.9 34 125-158 12-45 (48)
357 KOG2908 26S proteasome regulat 73.5 64 0.0014 28.4 10.3 69 259-327 78-156 (380)
358 COG3947 Response regulator con 73.5 59 0.0013 28.0 15.0 159 202-364 149-356 (361)
359 KOG0687 26S proteasome regulat 73.5 63 0.0014 28.3 14.4 97 293-391 106-211 (393)
360 PF14669 Asp_Glu_race_2: Putat 72.9 47 0.001 26.6 14.0 57 330-386 136-206 (233)
361 KOG4077 Cytochrome c oxidase, 72.3 16 0.00036 26.7 5.6 46 134-179 68-113 (149)
362 PF10579 Rapsyn_N: Rapsyn N-te 72.1 18 0.00039 24.0 5.3 18 330-347 47-64 (80)
363 PF04910 Tcf25: Transcriptiona 71.9 76 0.0017 28.6 17.6 54 299-352 111-165 (360)
364 PF10345 Cohesin_load: Cohesin 71.9 1E+02 0.0023 30.2 30.4 184 63-247 40-251 (608)
365 PF08311 Mad3_BUB1_I: Mad3/BUB 71.8 38 0.00082 25.0 7.9 41 133-173 81-122 (126)
366 PF07575 Nucleopor_Nup85: Nup8 71.5 1E+02 0.0022 29.9 16.5 65 325-391 404-468 (566)
367 PRK11619 lytic murein transgly 71.3 1.1E+02 0.0024 30.2 30.0 313 53-389 42-374 (644)
368 KOG4507 Uncharacterized conser 71.3 38 0.00083 32.1 9.0 133 60-197 589-721 (886)
369 KOG2659 LisH motif-containing 70.2 56 0.0012 26.9 8.8 99 76-174 22-127 (228)
370 PF04097 Nic96: Nup93/Nic96; 69.5 1.2E+02 0.0026 29.8 24.1 59 49-109 116-181 (613)
371 KOG2396 HAT (Half-A-TPR) repea 69.0 1E+02 0.0022 28.9 22.4 244 133-389 300-558 (568)
372 PF11846 DUF3366: Domain of un 68.9 20 0.00043 28.8 6.4 32 183-214 141-172 (193)
373 PF10579 Rapsyn_N: Rapsyn N-te 68.7 13 0.00027 24.7 4.0 17 120-136 48-64 (80)
374 PF14689 SPOB_a: Sensor_kinase 67.9 16 0.00034 23.0 4.4 25 329-353 26-50 (62)
375 KOG2297 Predicted translation 67.2 85 0.0018 27.3 15.1 21 256-276 321-341 (412)
376 KOG4567 GTPase-activating prot 67.2 65 0.0014 27.9 8.9 70 276-350 263-342 (370)
377 COG0735 Fur Fe2+/Zn2+ uptake r 67.0 48 0.001 25.2 7.7 63 278-341 8-70 (145)
378 PF10345 Cohesin_load: Cohesin 66.8 1.3E+02 0.0029 29.4 28.8 195 78-282 28-251 (608)
379 KOG4567 GTPase-activating prot 66.7 68 0.0015 27.8 8.9 42 242-283 264-305 (370)
380 PF06552 TOM20_plant: Plant sp 66.6 22 0.00048 28.0 5.7 63 97-162 52-125 (186)
381 cd00280 TRFH Telomeric Repeat 66.5 57 0.0012 25.9 7.8 21 334-354 119-139 (200)
382 KOG4507 Uncharacterized conser 66.5 21 0.00046 33.7 6.5 94 302-396 618-711 (886)
383 PF09477 Type_III_YscG: Bacter 66.5 44 0.00096 23.8 7.5 40 58-99 20-59 (116)
384 PF08424 NRDE-2: NRDE-2, neces 66.3 94 0.002 27.5 17.3 117 239-357 49-185 (321)
385 PF11663 Toxin_YhaV: Toxin wit 65.7 9.3 0.0002 28.3 3.4 29 234-264 108-136 (140)
386 cd08819 CARD_MDA5_2 Caspase ac 65.6 40 0.00087 22.9 6.7 64 206-275 22-85 (88)
387 cd00280 TRFH Telomeric Repeat 65.1 42 0.00091 26.6 6.9 98 58-159 30-152 (200)
388 PF11817 Foie-gras_1: Foie gra 64.8 51 0.0011 27.8 8.2 58 330-387 182-244 (247)
389 PRK10941 hypothetical protein; 64.6 90 0.0019 26.8 9.6 57 155-214 186-243 (269)
390 PF09454 Vps23_core: Vps23 cor 64.4 21 0.00046 22.7 4.4 47 325-372 7-53 (65)
391 PRK10564 maltose regulon perip 63.4 16 0.00036 31.3 4.9 39 115-153 257-295 (303)
392 PF11838 ERAP1_C: ERAP1-like C 63.1 1.1E+02 0.0023 26.9 17.1 109 237-350 146-261 (324)
393 cd08819 CARD_MDA5_2 Caspase ac 62.4 47 0.001 22.6 6.9 62 276-343 22-83 (88)
394 COG0735 Fur Fe2+/Zn2+ uptake r 62.4 52 0.0011 25.1 7.1 62 104-166 10-71 (145)
395 COG5187 RPN7 26S proteasome re 62.3 1E+02 0.0022 26.5 9.3 103 290-394 114-225 (412)
396 KOG1464 COP9 signalosome, subu 62.3 99 0.0021 26.3 14.5 207 40-247 22-258 (440)
397 PF03745 DUF309: Domain of unk 61.9 37 0.00081 21.3 5.7 48 90-137 9-61 (62)
398 TIGR02508 type_III_yscG type I 61.9 53 0.0012 23.1 7.8 87 58-153 19-105 (115)
399 KOG1464 COP9 signalosome, subu 61.4 1E+02 0.0022 26.2 21.6 200 76-276 22-251 (440)
400 KOG0545 Aryl-hydrocarbon recep 61.3 99 0.0021 26.0 9.7 19 264-282 186-204 (329)
401 COG5159 RPN6 26S proteasome re 61.3 1.1E+02 0.0023 26.4 11.6 128 192-319 9-153 (421)
402 PF12862 Apc5: Anaphase-promot 61.2 51 0.0011 22.7 6.8 21 369-389 49-69 (94)
403 PRK10941 hypothetical protein; 60.3 1.1E+02 0.0023 26.3 9.3 59 334-393 189-247 (269)
404 COG5108 RPO41 Mitochondrial DN 60.3 75 0.0016 30.8 8.8 92 155-249 33-131 (1117)
405 PRK14956 DNA polymerase III su 60.0 1.6E+02 0.0034 27.9 11.1 102 167-292 183-284 (484)
406 KOG0686 COP9 signalosome, subu 59.8 1.4E+02 0.003 27.2 13.6 62 82-143 152-215 (466)
407 PF11663 Toxin_YhaV: Toxin wit 59.5 11 0.00025 27.8 2.9 28 340-369 109-136 (140)
408 KOG1258 mRNA processing protei 58.8 1.7E+02 0.0037 28.0 25.0 323 44-375 113-489 (577)
409 PF07678 A2M_comp: A-macroglob 58.5 1.1E+02 0.0024 25.7 9.6 29 290-318 131-159 (246)
410 COG5187 RPN7 26S proteasome re 57.6 1.3E+02 0.0027 26.0 13.7 108 175-284 104-220 (412)
411 KOG2297 Predicted translation 57.1 1.3E+02 0.0029 26.2 15.9 20 326-345 321-340 (412)
412 PF04762 IKI3: IKI3 family; I 56.9 1.5E+02 0.0033 30.7 11.3 194 85-282 699-927 (928)
413 COG5108 RPO41 Mitochondrial DN 56.0 63 0.0014 31.3 7.6 74 85-161 33-114 (1117)
414 PF09986 DUF2225: Uncharacteri 56.0 1.1E+02 0.0025 25.1 10.8 52 343-394 142-198 (214)
415 PF10366 Vps39_1: Vacuolar sor 55.7 73 0.0016 22.8 7.0 27 328-354 41-67 (108)
416 KOG2582 COP9 signalosome, subu 55.7 1.5E+02 0.0033 26.5 15.5 142 196-356 193-346 (422)
417 PHA03100 ankyrin repeat protei 55.6 1.8E+02 0.0039 27.3 11.9 215 85-325 37-277 (480)
418 smart00386 HAT HAT (Half-A-TPR 55.3 27 0.00058 17.6 3.5 18 375-392 1-18 (33)
419 PF10475 DUF2450: Protein of u 55.2 1.4E+02 0.0031 25.9 10.1 113 228-351 105-222 (291)
420 PRK14958 DNA polymerase III su 55.2 1.7E+02 0.0037 27.9 10.7 86 167-255 181-279 (509)
421 PF12862 Apc5: Anaphase-promot 54.6 68 0.0015 22.1 7.0 23 332-354 47-69 (94)
422 smart00804 TAP_C C-terminal do 54.2 13 0.00028 23.5 2.2 24 58-81 39-62 (63)
423 COG0790 FOG: TPR repeat, SEL1 54.2 1.4E+02 0.0031 25.7 23.2 22 376-397 252-273 (292)
424 PF11817 Foie-gras_1: Foie gra 53.6 1.1E+02 0.0024 25.8 8.4 61 293-353 180-245 (247)
425 TIGR02508 type_III_yscG type I 53.0 79 0.0017 22.3 8.8 51 300-356 48-98 (115)
426 PF03943 TAP_C: TAP C-terminal 52.3 11 0.00023 22.6 1.5 25 57-81 26-50 (51)
427 PRK08691 DNA polymerase III su 51.9 1.8E+02 0.004 28.9 10.3 46 167-214 181-226 (709)
428 KOG1258 mRNA processing protei 51.5 2.3E+02 0.005 27.2 28.0 328 55-395 90-475 (577)
429 PF10475 DUF2450: Protein of u 51.3 1.7E+02 0.0036 25.5 10.0 25 288-312 194-218 (291)
430 PF04190 DUF410: Protein of un 51.1 1.6E+02 0.0034 25.2 19.5 26 185-210 89-114 (260)
431 PF11838 ERAP1_C: ERAP1-like C 51.0 1.7E+02 0.0037 25.6 19.7 110 202-316 146-262 (324)
432 COG2987 HutU Urocanate hydrata 50.9 62 0.0014 29.6 6.5 43 131-173 241-288 (561)
433 KOG2908 26S proteasome regulat 50.9 1.8E+02 0.0039 25.8 10.9 79 223-301 77-166 (380)
434 KOG2034 Vacuolar sorting prote 50.9 2.9E+02 0.0062 28.1 23.4 74 88-173 366-439 (911)
435 PRK13342 recombination factor 50.8 2.1E+02 0.0045 26.5 17.4 168 97-284 154-333 (413)
436 PF02847 MA3: MA3 domain; Int 50.4 90 0.0019 22.2 7.2 19 193-211 9-27 (113)
437 KOG0687 26S proteasome regulat 49.7 1.8E+02 0.004 25.6 14.6 97 186-284 104-209 (393)
438 PF02847 MA3: MA3 domain; Int 49.6 93 0.002 22.1 7.2 21 262-282 8-28 (113)
439 PF09868 DUF2095: Uncharacteri 48.9 73 0.0016 22.8 5.3 40 120-160 66-105 (128)
440 PF09454 Vps23_core: Vps23 cor 48.7 41 0.0009 21.4 3.8 49 289-338 6-54 (65)
441 TIGR01228 hutU urocanate hydra 48.6 89 0.0019 29.1 7.2 66 95-173 209-279 (545)
442 PF07064 RIC1: RIC1; InterPro 48.5 1.7E+02 0.0037 24.9 13.6 28 45-72 83-110 (258)
443 PRK09857 putative transposase; 48.5 1.8E+02 0.0039 25.3 9.0 26 333-358 247-272 (292)
444 PF12926 MOZART2: Mitotic-spin 48.2 85 0.0018 21.3 7.7 42 207-248 29-70 (88)
445 PF14929 TAF1_subA: TAF RNA Po 48.1 2.6E+02 0.0057 26.9 13.5 100 94-198 323-423 (547)
446 COG2909 MalT ATP-dependent tra 47.6 3.2E+02 0.007 27.8 28.0 223 161-386 426-684 (894)
447 PF09797 NatB_MDM20: N-acetylt 47.3 2.2E+02 0.0047 25.7 19.3 123 261-386 185-311 (365)
448 COG0819 TenA Putative transcri 47.0 98 0.0021 25.5 6.7 32 280-311 98-129 (218)
449 KOG1586 Protein required for f 46.3 1.8E+02 0.0038 24.4 18.0 22 302-323 165-186 (288)
450 PRK06645 DNA polymerase III su 46.2 2.2E+02 0.0048 27.2 9.8 86 167-255 190-291 (507)
451 PF05944 Phage_term_smal: Phag 46.0 75 0.0016 23.7 5.4 33 114-146 47-79 (132)
452 PF00244 14-3-3: 14-3-3 protei 45.5 1.8E+02 0.0039 24.3 10.5 59 191-249 6-65 (236)
453 PF09868 DUF2095: Uncharacteri 45.4 1E+02 0.0022 22.1 5.6 34 333-367 68-101 (128)
454 PF03745 DUF309: Domain of unk 45.1 77 0.0017 19.9 5.8 32 303-334 11-42 (62)
455 PF10366 Vps39_1: Vacuolar sor 44.8 1.1E+02 0.0025 21.8 7.4 27 293-319 41-67 (108)
456 TIGR01503 MthylAspMut_E methyl 44.8 58 0.0013 30.0 5.5 241 59-319 7-268 (480)
457 KOG2422 Uncharacterized conser 44.7 3E+02 0.0064 26.5 16.4 52 301-352 352-404 (665)
458 KOG1308 Hsp70-interacting prot 44.4 21 0.00047 31.2 2.7 90 56-148 126-215 (377)
459 KOG0686 COP9 signalosome, subu 44.3 2.5E+02 0.0055 25.6 15.1 24 189-212 153-176 (466)
460 PF06552 TOM20_plant: Plant sp 44.2 1.6E+02 0.0035 23.4 9.0 27 273-301 97-123 (186)
461 PRK11639 zinc uptake transcrip 43.8 1.4E+02 0.0031 23.4 7.1 46 121-166 31-76 (169)
462 PRK07003 DNA polymerase III su 43.3 3.7E+02 0.0081 27.3 14.4 46 167-214 181-226 (830)
463 PF04090 RNA_pol_I_TF: RNA pol 43.2 1.5E+02 0.0033 24.0 7.1 66 326-392 41-107 (199)
464 KOG2396 HAT (Half-A-TPR) repea 42.9 3E+02 0.0064 26.0 27.6 82 60-144 87-169 (568)
465 PRK11639 zinc uptake transcrip 42.5 1.7E+02 0.0036 23.0 8.0 44 227-270 31-74 (169)
466 PRK14963 DNA polymerase III su 42.3 2.5E+02 0.0055 26.8 9.6 86 167-255 178-275 (504)
467 PF15297 CKAP2_C: Cytoskeleton 42.1 2.5E+02 0.0055 25.0 8.9 63 308-372 120-186 (353)
468 PF12069 DUF3549: Protein of u 41.9 2.5E+02 0.0055 25.0 12.6 138 226-373 171-310 (340)
469 PRK07764 DNA polymerase III su 41.8 3.1E+02 0.0066 28.2 10.5 27 261-288 253-279 (824)
470 smart00777 Mad3_BUB1_I Mad3/BU 41.7 1.4E+02 0.0031 22.0 8.1 42 132-173 80-122 (125)
471 PRK14951 DNA polymerase III su 41.3 3.6E+02 0.0078 26.6 11.7 85 167-254 186-283 (618)
472 PRK14963 DNA polymerase III su 41.1 2.3E+02 0.0051 27.0 9.2 86 59-147 176-273 (504)
473 PRK13800 putative oxidoreducta 40.6 4.5E+02 0.0097 27.4 24.7 277 29-339 620-897 (897)
474 PF01475 FUR: Ferric uptake re 40.4 91 0.002 22.6 5.3 41 228-268 14-54 (120)
475 smart00544 MA3 Domain in DAP-5 40.2 1.4E+02 0.0029 21.3 8.9 61 294-356 5-67 (113)
476 COG4259 Uncharacterized protei 40.1 1.3E+02 0.0028 21.1 5.4 28 366-393 77-104 (121)
477 PRK09857 putative transposase; 40.1 2.5E+02 0.0055 24.4 8.9 66 259-325 209-274 (292)
478 KOG0403 Neoplastic transformat 39.8 3.1E+02 0.0068 25.5 15.3 253 115-376 345-631 (645)
479 PRK05414 urocanate hydratase; 39.6 1.1E+02 0.0023 28.8 6.3 43 131-173 241-288 (556)
480 cd07153 Fur_like Ferric uptake 39.3 98 0.0021 22.2 5.3 48 297-344 6-53 (116)
481 cd07153 Fur_like Ferric uptake 39.0 1.1E+02 0.0025 21.8 5.6 13 238-250 17-29 (116)
482 KOG2063 Vacuolar assembly/sort 39.0 4.6E+02 0.0099 27.1 17.0 117 117-233 506-638 (877)
483 COG4003 Uncharacterized protei 39.0 1.2E+02 0.0026 20.3 4.9 30 120-150 36-65 (98)
484 PF14561 TPR_20: Tetratricopep 38.6 1.3E+02 0.0028 20.6 8.4 31 325-355 21-51 (90)
485 PF05944 Phage_term_smal: Phag 38.4 1.7E+02 0.0037 21.9 7.2 45 69-114 38-82 (132)
486 PHA02875 ankyrin repeat protei 38.2 3.2E+02 0.0069 25.1 15.7 213 50-291 5-230 (413)
487 PF08424 NRDE-2: NRDE-2, neces 37.8 2.9E+02 0.0063 24.4 17.9 119 272-392 47-185 (321)
488 PF01475 FUR: Ferric uptake re 37.3 91 0.002 22.6 4.9 44 332-375 13-56 (120)
489 PF07678 A2M_comp: A-macroglob 37.2 2.2E+02 0.0047 24.0 7.7 83 307-391 115-222 (246)
490 PRK08691 DNA polymerase III su 37.2 4.4E+02 0.0096 26.4 12.0 86 272-360 180-279 (709)
491 PRK06645 DNA polymerase III su 37.1 2.8E+02 0.006 26.5 8.9 88 59-149 188-291 (507)
492 TIGR03362 VI_chp_7 type VI sec 37.0 82 0.0018 27.5 5.2 17 124-140 222-238 (301)
493 PF09670 Cas_Cas02710: CRISPR- 36.9 3.3E+02 0.0071 24.8 12.6 55 230-285 140-198 (379)
494 COG4259 Uncharacterized protei 36.6 1.5E+02 0.0033 20.8 6.1 43 99-141 56-98 (121)
495 cd08790 DED_DEDD Death Effecto 36.5 1E+02 0.0022 21.4 4.4 58 126-186 35-92 (97)
496 KOG2659 LisH motif-containing 36.5 2.5E+02 0.0054 23.3 11.0 98 252-351 22-128 (228)
497 PF15297 CKAP2_C: Cytoskeleton 36.3 3.2E+02 0.0068 24.4 8.4 70 92-161 114-186 (353)
498 PRK09462 fur ferric uptake reg 36.2 1.9E+02 0.0042 21.9 7.5 13 274-286 35-47 (148)
499 KOG0991 Replication factor C, 35.5 2.7E+02 0.0058 23.4 14.0 123 260-387 163-299 (333)
500 COG2137 OraA Uncharacterized p 35.0 2.3E+02 0.0049 22.4 13.3 124 207-352 39-164 (174)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-59 Score=451.86 Aligned_cols=364 Identities=13% Similarity=0.142 Sum_probs=351.3
Q ss_pred CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHH
Q 015329 42 VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRI 121 (409)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (409)
|+...+..++..+.+.++.+.|.++|+.|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|...+..++..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 566677888899999999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc-CCCCcCHHHHHHHHHHHHhcC
Q 015329 122 MMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK-FHIQFDIFSFNIVIKAFCEMG 200 (409)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g 200 (409)
|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|... .|+.||..+|++++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999888653 688999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329 201 ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMG 280 (409)
Q Consensus 201 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 280 (409)
++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 015329 281 LMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360 (409)
Q Consensus 281 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 360 (409)
+|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406 (409)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (409)
..||+.++.+|.+.|++++|.+++++|.+.+..++..+++.++.+|
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-57 Score=443.03 Aligned_cols=365 Identities=16% Similarity=0.189 Sum_probs=347.0
Q ss_pred CCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCC-------------------------------CccchHHHHHHHHhc
Q 015329 44 KPLEPPALVKLKAERDPEKLFQLFKANAHNRIVI-------------------------------ENKYAFEDTVSRLAG 92 (409)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~li~~~~~ 92 (409)
.+.+...+..+.+.|+.+.|+++|++|.+.+.+. ||..+|+.++.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4456667777888899999999999998777332 678889999999999
Q ss_pred CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 015329 93 ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAF 172 (409)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 172 (409)
.|++++|.++|+.|.+.+..++..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|..+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329 173 LMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK--LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
|++| ...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.
T Consensus 530 f~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 530 YGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9877 4569999999999999999999999999999999986 678999999999999999999999999999999999
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015329 251 GCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQ 330 (409)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 330 (409)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhccC
Q 015329 331 TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS 409 (409)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k~ 409 (409)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.+..++..+|..++.+|++.
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999863
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-54 Score=413.98 Aligned_cols=351 Identities=16% Similarity=0.170 Sum_probs=259.6
Q ss_pred CChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHH
Q 015329 46 LEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLY 125 (409)
Q Consensus 46 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (409)
.+...+..+.+.|++++|+++|++|...+++.||..+|+.++.+|++.++++.+.+++..|.+.+..++..+++.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56777888999999999999999998876678899999999999999999999999999988888888888877788877
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc--------------------------
Q 015329 126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK-------------------------- 179 (409)
Q Consensus 126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------- 179 (409)
++.|+++.|.++|++|. .||..+||.++.+|++.|++++|..+|++|.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 77777777777777775 467777777777777777777777777666322
Q ss_pred --------CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329 180 --------FHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG 251 (409)
Q Consensus 180 --------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 251 (409)
.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|.++||.+|.+|++.|++++|+++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 23334444556666677777777777777776643 466777777777777777777777777777777
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQT 331 (409)
Q Consensus 252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 331 (409)
+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777776653 46667777
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCCchhHHHHHHhhcc
Q 015329 332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR-RVPHFSSNQLSAFKSILSK 408 (409)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~k 408 (409)
||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .+..++..+|..++++|++
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 7777777777777777777777777777777777777777777777777777777754 3555556666666666665
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.6e-52 Score=400.48 Aligned_cols=350 Identities=13% Similarity=0.143 Sum_probs=313.2
Q ss_pred CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHH
Q 015329 42 VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRI 121 (409)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (409)
++...+..++..+.+.++.+.+.+++..|.+.| +.||..+|+.++..|++.|++++|.++|++|.. ++..+|+.+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~l 195 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTI 195 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHH
Confidence 556678888888999999999999999998888 889999999999999999999999999999863 577889999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCC-----------------------------------HHhHHHHHHHHHccCCH
Q 015329 122 MMLYGKAGMIKHAMDTFYDMHLYGCKRT-----------------------------------VKSLNAALKVLTESRDL 166 (409)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------------------------------~~~~~~ll~~~~~~~~~ 166 (409)
+.+|++.|++++|+++|++|.+.|+.|+ ..+|+.|+.+|++.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 9999999999999999999977766555 44557788899999999
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNL 246 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 246 (409)
++|..+|++|.. +|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..
T Consensus 276 ~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 276 EDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 999999988854 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015329 247 MVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR 326 (409)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 326 (409)
|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999999999999999999999986 578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHh
Q 015329 327 KIYQTMIHYLCQEGDFNLAYIMCKDSMK-KNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSI 405 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (409)
.||+.++.+|++.|.+++|.++|++|.+ .|+.|+..+|+.++.+|.+.|++++|.++++++ ...++..++..|+.+
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999976 588999999999999999999999999888765 334556677888877
Q ss_pred hcc
Q 015329 406 LSK 408 (409)
Q Consensus 406 ~~k 408 (409)
|.+
T Consensus 504 ~~~ 506 (697)
T PLN03081 504 CRI 506 (697)
T ss_pred HHH
Confidence 754
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-50 Score=399.50 Aligned_cols=353 Identities=19% Similarity=0.162 Sum_probs=209.4
Q ss_pred CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchH-----------------------------------HHH
Q 015329 42 VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAF-----------------------------------EDT 86 (409)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------------------------~~l 86 (409)
++.+.++..+..+.+.|++++|+.+|+.|.+.+ +.|+..+| +.+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 344556677788888888888888888887765 55555554 444
Q ss_pred HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329 87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL 166 (409)
Q Consensus 87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 166 (409)
+..|++.|+++.|.++|++|.. ++..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++++|...+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 5555666666666666666642 356677777777777777777777777777777777766666555555555444
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNL 246 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 246 (409)
+.+.+++..+ .+.|+.||..+||.++.+|++.|+++.|.++|++|. .+|.++||++|.+|++.|++++|+++|++
T Consensus 204 ~~~~~~~~~~-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 204 ARGREVHAHV-VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhHHHHHHHH-HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444444333 233445555555555555555555555555555553 24555555555555555555555555555
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015329 247 MVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR 326 (409)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 326 (409)
|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 555555555555555555555555555555555555555555555555555555555555555555555554 2355
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329 327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (409)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||..++.+|++.|+++.|.++++.+.+.+..++..+++.|+++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cc
Q 015329 407 SK 408 (409)
Q Consensus 407 ~k 408 (409)
+|
T Consensus 435 ~k 436 (857)
T PLN03077 435 SK 436 (857)
T ss_pred HH
Confidence 54
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-50 Score=397.17 Aligned_cols=351 Identities=13% Similarity=0.111 Sum_probs=195.5
Q ss_pred CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHH
Q 015329 42 VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRI 121 (409)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (409)
++...|+..+..+.+.|++++|+++|++|...+ +.||..||+.++.+|++.|+++.+.+++..+.+.+..++..+|+.|
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 344455566666666666666666666666555 5666666666666666666666666666666666655566666666
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC
Q 015329 122 MMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI 201 (409)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 201 (409)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|..+|++| ...|+.||..+|+.++.+|++.|+
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCCCceeHHHHHHHHhccch
Confidence 666666666666666666554 355555666666666666666666666544 333555555555555555555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 015329 202 LDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL 281 (409)
Q Consensus 202 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 281 (409)
++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|+.|.+ +|..+|+.+|.+|++.|+.++|..+|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555432 2334444444444444444444444444
Q ss_pred HHHcCCCcCH-----------------------------------------------------------------HHHHH
Q 015329 282 MQRFGIEPDE-----------------------------------------------------------------VTYNL 296 (409)
Q Consensus 282 ~~~~~~~p~~-----------------------------------------------------------------~~~~~ 296 (409)
|.+ ++.||. .+||.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~ 559 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNI 559 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHH
Confidence 432 234444 44455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCC
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM-KKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g 375 (409)
+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.+|.+.|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 555555555555555555555555555555555555555555555555555555555 3455555555555555555555
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329 376 QPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406 (409)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (409)
++++|.+++++|. ..++..++.+|+.+|
T Consensus 640 ~~~eA~~~~~~m~---~~pd~~~~~aLl~ac 667 (857)
T PLN03077 640 KLTEAYNFINKMP---ITPDPAVWGALLNAC 667 (857)
T ss_pred CHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 5555555555552 233344555555554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=6.1e-22 Score=199.28 Aligned_cols=338 Identities=15% Similarity=0.043 Sum_probs=195.3
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
+...+++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++.+....+. +...+..+...+.+.|++++
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHH
Confidence 334455555555555544433 222333444444445555555555555554433222 33444445555555555555
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ 213 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 213 (409)
|..+|+++...+ +.+...+..+...+...|+++.+..+++.+... .+.+...|..+...|...|++++|...|+++.
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554433 334444555555555566666666555544332 23345556666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHH
Q 015329 214 KLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVT 293 (409)
Q Consensus 214 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 293 (409)
+.... +...+..+...+.+.|++++|..+++.+.+.. +.+..++..+...+...|++++|..+++.+.+.+. .+...
T Consensus 629 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 705 (899)
T TIGR02917 629 ALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALG 705 (899)
T ss_pred HhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHH
Confidence 54322 45556666666666666666666666666542 33456666666666666666666666666665542 35556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329 294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK 373 (409)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 373 (409)
+..+...+...|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|..
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 6666667777777777777777776653 344556666777777777777777777766653 5566677777777777
Q ss_pred CCChHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 015329 374 NNQPCKANTIMALVQRRVPHFSSNQLSAFKS 404 (409)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 404 (409)
.|++++|.+.++++.+..|+. ...+..+..
T Consensus 783 ~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~ 812 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAPDN-AVVLNNLAW 812 (899)
T ss_pred CcCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 777777777777777766543 333343333
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=6.8e-22 Score=198.92 Aligned_cols=337 Identities=10% Similarity=0.014 Sum_probs=183.7
Q ss_pred cCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 015329 57 ERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMD 136 (409)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (409)
.|+.++|...|+.+...+ +.+...+..++..+.+.|++++|..+++.+....+ .+...+..+..+|...|++++|.+
T Consensus 546 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 334444444444443332 12223333444444444444444444444433221 133444444555555555555555
Q ss_pred HHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329 137 TFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG 216 (409)
Q Consensus 137 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 216 (409)
.|+++.+.. +.+...+..+...+...|+++.|..+++++... .+.+..++..+...+...|++++|.++++.+.+.+
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555544432 223344444555555555555555555443322 11234445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHH
Q 015329 217 VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNL 296 (409)
Q Consensus 217 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 296 (409)
. .+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|++++|...++.+.+... .+...+..
T Consensus 700 ~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~ 775 (899)
T TIGR02917 700 P-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTA 775 (899)
T ss_pred c-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 2 244455555555566666666666666655542 3335555566666666666666666666655432 25566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
+...|...|++++|.++|+++.+... .+..+++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+...|+
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 66667777777777777777666532 356666667777777777 66777777666543 3445566667777788888
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 015329 377 PCKANTIMALVQRRVPHFSSNQLSAFKSILS 407 (409)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (409)
+++|.++++++.+.+|. ++..+..+..+|.
T Consensus 853 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 882 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPE-AAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence 88888888888887765 4555555655554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.5e-22 Score=182.28 Aligned_cols=300 Identities=9% Similarity=0.047 Sum_probs=188.3
Q ss_pred HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC---HHhHHHHHHHHHccC
Q 015329 88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT---VKSLNAALKVLTESR 164 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~ 164 (409)
..+...|++++|...|+++....+. +..++..+...+...|++++|.++++.+...+..++ ..++..+...|...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3345556666666666666655332 344555666666677777777777766655321111 234566666677777
Q ss_pred CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChhhH
Q 015329 165 DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV----ITYTTLISAFYKDNRPEIG 240 (409)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a 240 (409)
+++.|..+|+++.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|
T Consensus 122 ~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 777777777665433 1234556677777777777777777777777665433221 2344555666677777777
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 241 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777776643 33455666666777777777777777777766533222455667777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHhcCCCCC
Q 015329 321 RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK---NNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 321 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+....++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 355555667777777777777777777776665 4677677766666554 4467777777777765544433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=9.6e-23 Score=184.99 Aligned_cols=301 Identities=11% Similarity=0.035 Sum_probs=250.7
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC---hhHHHHHHHHHHhcCC
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR---EGFIMRIMMLYGKAGM 130 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 130 (409)
....++++.|++.|+.+.+.+ +.+..++..+...+...|++++|..+++.+...+.... ...+..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 446789999999999999886 34556788899999999999999999999987643322 2456778999999999
Q ss_pred hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHH
Q 015329 131 IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYL 207 (409)
Q Consensus 131 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~ 207 (409)
+++|.++|+++.+.. +.+..+++.++..+.+.|++++|...++.+.......+. ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998764 456788999999999999999999999877654322222 2245677788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 015329 208 VMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI 287 (409)
Q Consensus 208 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 287 (409)
.|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99999986432 566788888999999999999999999987643333567889999999999999999999999887
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCHH
Q 015329 288 EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ---EGDFNLAYIMCKDSMKKNWVPSVD 362 (409)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 362 (409)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.++++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 456666788999999999999999999998876 6899999988888775 568999999999999988777765
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.8e-20 Score=177.20 Aligned_cols=348 Identities=8% Similarity=-0.035 Sum_probs=280.7
Q ss_pred ChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329 47 EPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG 126 (409)
Q Consensus 47 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (409)
...++..+.+.|+++.|+.+++...... +-+...+..++.++...|++++|...++.+....+. +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3455667788999999999999998886 334455666677778899999999999999987554 5667778899999
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 015329 127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY 206 (409)
Q Consensus 127 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 206 (409)
..|++++|.+.|++..+.. +.+...+..+...+...|+.++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P--~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP--PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC--CCHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999998764 44567888999999999999999999876644422 223333333 3478899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH----HHHHHHHH
Q 015329 207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ----ANKLMGLM 282 (409)
Q Consensus 207 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~ 282 (409)
..++.+.+....++...+..+..++.+.|++++|+..++...+.. +.+...+..+...+...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999998876544455556666788899999999999999999874 5567788889999999999986 89999999
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH-
Q 015329 283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV- 361 (409)
Q Consensus 283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~- 361 (409)
.+.... +...+..+...+.+.|++++|...+++..+.... +...+..+..++...|++++|...++++.+.+ |+.
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~ 352 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS 352 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence 887433 6778899999999999999999999999987433 56677788899999999999999999988763 544
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329 362 DTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406 (409)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (409)
..+..+..++...|+.++|.+.+++..+..|......+..-+..|
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~ 397 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLAL 397 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHH
Confidence 334445678899999999999999999998887666665555444
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=3.6e-17 Score=156.36 Aligned_cols=292 Identities=10% Similarity=0.025 Sum_probs=154.0
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
+.+.++++.|+..|+...... |+...|..+..++.+.|++++|++.++......+. ....+..+..+|...|++++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 456799999999999998765 67788889999999999999999999998877543 45666678888888888888
Q ss_pred HHHHHHHhhhcC----------------------------CCC-CHHhHHHHHH--------------------------
Q 015329 134 AMDTFYDMHLYG----------------------------CKR-TVKSLNAALK-------------------------- 158 (409)
Q Consensus 134 a~~~~~~m~~~~----------------------------~~~-~~~~~~~ll~-------------------------- 158 (409)
|+.-|......+ ..| +...+..+..
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 876553322110 000 0000000000
Q ss_pred ----HH------HccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 159 ----VL------TESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTL 227 (409)
Q Consensus 159 ----~~------~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 227 (409)
.. ...+.+++|...|+.........| +...|+.+...+...|++++|+..|++..+.... ....|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 00 011234455555544433221222 2334444555555555555555555555543211 23344444
Q ss_pred HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 015329 228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHL 307 (409)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (409)
...+...|++++|...|+...+.. +.+...|..+...+...|++++|...|++..+.... +...+..+...+.+.|++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCH
Confidence 455555555555555555554432 223444444455555555555555555554443211 233344444444444555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 308 DMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 308 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
++|...|+...+.. .-+...++.+...+...|++++|.+.|++.+
T Consensus 450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 450 ASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555544444331 1123344444444444444444444444433
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=7.5e-17 Score=153.89 Aligned_cols=333 Identities=12% Similarity=0.016 Sum_probs=263.3
Q ss_pred hhhcCChHHHHHHHHHhhcCCC-CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329 54 LKAERDPEKLFQLFKANAHNRI-VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK 132 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (409)
+.++.+++..--+|....+... ...+..-...++..+.+.|++++|..+++......+. +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 3455666665555555433321 1123344666788899999999999999999877665 4555555777788899999
Q ss_pred HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015329 133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEM 212 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 212 (409)
.|.+.|+++.+.. +.+...+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999998875 4566788889999999999999999998775541 234667888999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH
Q 015329 213 QKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV 292 (409)
Q Consensus 213 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 292 (409)
...... +...+..+ ..+...|++++|...++.+.+....++...+..+..++.+.|++++|...++++.+.... +..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH
Confidence 776544 23333333 347889999999999999887643344555566678889999999999999999987533 677
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDM----AKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL 368 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 368 (409)
.+..+...+...|++++ |...|++..+.... +...+..+...+...|++++|...+++.++.. +.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 88889999999999986 89999999876433 67789999999999999999999999998864 45567788888
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 369 EGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.++.+.|++++|.+.++.+.+..|...
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 999999999999999999998887654
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=1.1e-16 Score=162.99 Aligned_cols=335 Identities=10% Similarity=-0.008 Sum_probs=241.4
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh-hHH----------H--
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE-GFI----------M-- 119 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~----------~-- 119 (409)
.+...|++++|+..|+...+.. +.+..++..+...+.+.|++++|+..|++..+..+.... ..+ .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3456799999999999998876 346778888999999999999999999998866543221 111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHH---------
Q 015329 120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFN--------- 190 (409)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 190 (409)
.....+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|...|++..+...- +...+.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~--~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG--NTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhc
Confidence 22446778999999999999988764 445667778888999999999999998776544211 122222
Q ss_pred ---------------------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329 191 ---------------------------------IVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP 237 (409)
Q Consensus 191 ---------------------------------~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 237 (409)
.+...+...|++++|++.|++..+.... +...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 2334455678999999999998886543 566777788889999999
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc--------------------------------
Q 015329 238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF-------------------------------- 285 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 285 (409)
++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999887643 223333333333333444444444443332100
Q ss_pred -------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 015329 286 -------GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWV 358 (409)
Q Consensus 286 -------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 358 (409)
..+.+...+..+...+.+.|++++|++.|+...+.... +...+..+...|...|++++|.+.++...+.. +
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 01234556667888888999999999999999887433 67788899999999999999999999877653 3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329 359 PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 359 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
.+...+..+..++...|++++|.++++.+.+..++.++
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 45566777788899999999999999999887655443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=2.3e-17 Score=145.20 Aligned_cols=336 Identities=14% Similarity=0.069 Sum_probs=249.7
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChh----------------
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREG---------------- 116 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------- 116 (409)
.+...|+.+.|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+.++. ...
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccc
Confidence 4556799999999999998876 446677888999999999999988888887765431 111
Q ss_pred ------------------HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHhcC
Q 015329 117 ------------------FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT-VKSLNAALKVLTESRDLKAIQAFLMEVP 177 (409)
Q Consensus 117 ------------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 177 (409)
.|..|...+..+|++..|++-|++.... .|+ ...|-.|...|...+.++.|...+....
T Consensus 202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 1333444455566666666666666543 333 3456666666666666666666654432
Q ss_pred ccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH
Q 015329 178 EKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL 256 (409)
Q Consensus 178 ~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 256 (409)
. ..|+ ...+..+...|...|++|.|++.|++..+.... =...|+.|.+++-..|++.+|+..++...... +...
T Consensus 280 ~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha 354 (966)
T KOG4626|consen 280 N---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA 354 (966)
T ss_pred h---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence 2 2333 455666666777778888888888887765322 25678889999999999999999999888763 4456
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR-KIYQTMIHY 335 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~ 335 (409)
.+.+.+...|...|.++.|..+|....+.... -...++.|...|-+.|++++|+..|++.+.. .|+. ..|+.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchH
Confidence 77888889999999999999999888775322 2456788999999999999999999988854 5654 578889999
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHH
Q 015329 336 LCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAF 402 (409)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 402 (409)
|-..|+++.|.+.+.+.+..+ +.-.+.++.|...|-..|+..+|+.-++...+..|+++....+.+
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 999999999999998887754 333567889999999999999999999999999988876554433
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=9.8e-16 Score=149.33 Aligned_cols=341 Identities=11% Similarity=0.000 Sum_probs=241.0
Q ss_pred hHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh
Q 015329 48 PPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK 127 (409)
Q Consensus 48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (409)
..+-..+...+++++|+++|+...+.. +.+...+..+...+...|++++|...++++....+. +.. +..+..++..
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~ 128 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHH
Confidence 334445667899999999999988775 345566777888889999999999999998876444 444 7778888899
Q ss_pred cCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHh--------------------------------
Q 015329 128 AGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLME-------------------------------- 175 (409)
Q Consensus 128 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------------------------------- 175 (409)
.|+.++|+..++++.+.. +.+...+..+..++...+..+.|...++.
T Consensus 129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 999999999999998764 33455556666666666665555444432
Q ss_pred --------------cCccCCCCcCHH-H----HHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcC
Q 015329 176 --------------VPEKFHIQFDIF-S----FNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PDVITYTTLISAFYKDN 235 (409)
Q Consensus 176 --------------~~~~~~~~~~~~-~----~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~ 235 (409)
+.......|+.. . ....+..+...|++++|+..|+.+.+.+.. |+. .-..+...|...|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g 286 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcC
Confidence 221111122211 1 111133456778899999999998876532 332 2223567888899
Q ss_pred ChhhHHHHHHHHHhcCCCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----------CcC---HHHHHHHH
Q 015329 236 RPEIGNGLWNLMVCKGCFP---NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-----------EPD---EVTYNLVI 298 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li 298 (409)
++++|+.+|+.+.+..... .......+..++...|++++|..+++.+.+... .|+ ...+..+.
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999887643111 123455666678889999999999988876531 123 22445667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 015329 299 KGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPC 378 (409)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 378 (409)
..+...|+.++|+++++++...... +...+..+...+...|++++|++.+++.++.. +.+...+......+.+.|+++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHH
Confidence 7888889999999999998876332 56778888888889999999999999888764 444667777777888899999
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 015329 379 KANTIMALVQRRVPHFSS 396 (409)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~ 396 (409)
+|..+++++.+..|+...
T Consensus 445 ~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 445 QMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 999999999988877643
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2.9e-15 Score=143.37 Aligned_cols=306 Identities=9% Similarity=-0.076 Sum_probs=240.9
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329 83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE 162 (409)
Q Consensus 83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 162 (409)
+......+.+.|++++|+..|++.....+ +..+|..+..+|.+.|++++|++.++..++.+ +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p--~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP--DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44567788899999999999999887644 56788889999999999999999999998764 4466789999999999
Q ss_pred cCCHHHHHHHHHhcCccCCCC-------------------------------cCHHHHHHH-------------------
Q 015329 163 SRDLKAIQAFLMEVPEKFHIQ-------------------------------FDIFSFNIV------------------- 192 (409)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~l------------------- 192 (409)
.|++++|...+.......+.. |........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999988876543221111100 000000000
Q ss_pred --------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH
Q 015329 193 --------IKAF------CEMGILDKAYLVMVEMQKLG-VKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL 256 (409)
Q Consensus 193 --------l~~~------~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 256 (409)
+..+ ...+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..++...+.. +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0000 12357889999999998765 223 45678888888999999999999999998863 3346
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL 336 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 336 (409)
..|..+...+...|++++|...|++..+... -+...|..+...+...|++++|...|++..+.... +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 6888888999999999999999999987743 26788889999999999999999999999887432 567788888999
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 337 CQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.+.|++++|+..|++.++.. +.+...+..+...+...|++++|++.+++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 99999999999999988753 55678899999999999999999999999998877643
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=8.3e-15 Score=142.88 Aligned_cols=343 Identities=9% Similarity=0.014 Sum_probs=252.6
Q ss_pred CCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH
Q 015329 45 PLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMML 124 (409)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (409)
......+..+.-.|+.++|++++....... +.+...+..+..++.+.|++++|.++|++.....+. +...+..+...
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~ 92 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344455666778899999999999997643 344556888999999999999999999998877443 56667788899
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH
Q 015329 125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK 204 (409)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 204 (409)
+...|++++|++.+++..+.. +.+.. +..+..++...|+.+.|...+++..... +-+...+..+...+...|..+.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHH
Confidence 999999999999999998774 44556 8888999999999999999998876552 2234445556666666666554
Q ss_pred HHH----------------------------------------------HHHHHHhC-CCCCCHH-HHH----HHHHHHH
Q 015329 205 AYL----------------------------------------------VMVEMQKL-GVKPDVI-TYT----TLISAFY 232 (409)
Q Consensus 205 a~~----------------------------------------------~~~~m~~~-g~~~~~~-~~~----~ll~~~~ 232 (409)
|++ .++.+.+. ...|+.. .+. ..+.++.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 444 34444422 1122211 111 1133456
Q ss_pred HcCChhhHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHhcCCHH
Q 015329 233 KDNRPEIGNGLWNLMVCKGCF-PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTYNLVIKGFCRSGHLD 308 (409)
Q Consensus 233 ~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~ 308 (409)
..|++++|+..|+.+.+.+.. |+. .-..+..+|...|++++|...|+++.+..... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 778999999999999887532 322 22225678899999999999999987653211 1345666777889999999
Q ss_pred HHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 015329 309 MAKKVYSAMLGRRL-----------MPN---RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN 374 (409)
Q Consensus 309 ~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 374 (409)
+|...++.+..... .|+ ...+..+...+...|++++|+++++++.... +-+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99999999886521 123 2345667778889999999999999988764 66778888889999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCc
Q 015329 375 NQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 375 g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
|++++|++.++++.+..|+...
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChH
Confidence 9999999999999999877654
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=4.5e-15 Score=125.51 Aligned_cols=355 Identities=13% Similarity=0.148 Sum_probs=204.4
Q ss_pred hhhcCCCcCCCCC-CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHH--HhcCCCchh-HHHHHH
Q 015329 29 AVSLNKFPNREPL-VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSR--LAGARRFDY-IEHLLE 104 (409)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~-a~~~~~ 104 (409)
.|+++.+.+++-. |........+..+...+....+.-+|+.|.+.+ +..++..--.++.. |....+.-- -++.|-
T Consensus 99 QP~l~~F~P~~l~~~~~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv 177 (625)
T KOG4422|consen 99 QPQLPVFRPRHLADPLQVETENNLLKMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFV 177 (625)
T ss_pred CccccccCchhcCCchhhcchhHHHHHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHh
Confidence 4445555444422 333345566777888889999999999998887 55555443333322 111111111 111111
Q ss_pred HhhhC-------------------CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC
Q 015329 105 HQKSL-------------------PQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD 165 (409)
Q Consensus 105 ~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 165 (409)
.|... -.+.++.++..+|.+.++--..+.|.++|++-.+...+.+..+||.+|.+..-.-+
T Consensus 178 ~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~ 257 (625)
T KOG4422|consen 178 GMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG 257 (625)
T ss_pred hccccccccccccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc
Confidence 11111 12336778888888888888888888888888777778888888888877654443
Q ss_pred HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh-H
Q 015329 166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK----AYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI-G 240 (409)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-a 240 (409)
.+++.+|.. ....||..|+|+++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++-++..+ +
T Consensus 258 ----K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 258 ----KKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred ----HHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 445555533 3567888888888888888887764 46677888888888888888888888887777644 3
Q ss_pred HHHHHHHHh----cCCCC----CHhhHHHHHHHHHhcCCHhHHHHHHH--------------------------------
Q 015329 241 NGLWNLMVC----KGCFP----NLATFNVRIQHLVNKRRSWQANKLMG-------------------------------- 280 (409)
Q Consensus 241 ~~~~~~m~~----~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~-------------------------------- 280 (409)
..++.++.. ..++| |...|...+..|....+.+-|..+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 344444332 22222 33444555555555555544444333
Q ss_pred ----------HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CH-------
Q 015329 281 ----------LMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG-DF------- 342 (409)
Q Consensus 281 ----------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~------- 342 (409)
.|.-.-.-|+..+...++++..-.|.++-.-++|.++...|...+...-.-++..+++.. +.
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 332222235555666666666667777766666666666553333333333333333222 00
Q ss_pred -hH-----HHHH-------HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 343 -NL-----AYIM-------CKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 343 -~~-----a~~~-------~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
.. |..+ -.+|.+. .......+.+...+.+.|+.++|-+++..+.+++
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 00 0000 1112222 2334455566666667777777777777664333
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=2.3e-14 Score=137.68 Aligned_cols=335 Identities=10% Similarity=0.024 Sum_probs=200.3
Q ss_pred HHHhhhhcCChHHHHHHHHHhhcCCCCCCcc--chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh
Q 015329 50 ALVKLKAERDPEKLFQLFKANAHNRIVIENK--YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK 127 (409)
Q Consensus 50 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (409)
......+.|+++.|++.|+...+.. |+. ..+ .++..+...|+.++|+..+++.. .+..........+...|..
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHH
Confidence 3445667889999999999998877 443 234 77788888899999999999887 2222233444445678888
Q ss_pred cCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 015329 128 AGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYL 207 (409)
Q Consensus 128 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 207 (409)
.|++++|+++|+++.+.. +-+...+..++..+...++.++|...++.+... .|+...+..++..+...++..+|++
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHH
Confidence 899999999999998875 445667777888888999999999998777655 4555555444444444566656888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHH------------------------------------------
Q 015329 208 VMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWN------------------------------------------ 245 (409)
Q Consensus 208 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------------------------------------------ 245 (409)
.++++.+.... +...+..+..++.+.|-...|.++..
T Consensus 191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 88888876432 44444444444444443333322221
Q ss_pred ------HHHhc-CCCCCH-h----hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 015329 246 ------LMVCK-GCFPNL-A----TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKV 313 (409)
Q Consensus 246 ------~m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (409)
.+... +..|.. . ..--.+-++...|++.++++.|+.+...|.+....+-..+.++|...+.+++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 11110 011211 1 11122335555666666666666666655443444555666666666666666666
Q ss_pred HHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----------CCC--HH-HHHHHHHHHHhC
Q 015329 314 YSAMLGRR-----LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW-----------VPS--VD-TISALLEGLKKN 374 (409)
Q Consensus 314 ~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~~~--~~-~~~~l~~~~~~~ 374 (409)
|+.+.... ..++......|..+|...+++++|..+++++.+.-- .|+ -. .+..++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 66654432 122333345566666666666666666666554210 111 11 223334555566
Q ss_pred CChHHHHHHHHHHHhcCCCC
Q 015329 375 NQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 375 g~~~~a~~~~~~~~~~~~~~ 394 (409)
|+..+|++.++++....|.+
T Consensus 430 gdl~~Ae~~le~l~~~aP~n 449 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPAN 449 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 66666666666665555444
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=3.3e-15 Score=152.25 Aligned_cols=323 Identities=9% Similarity=-0.021 Sum_probs=211.2
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHH--------
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLY-------- 125 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 125 (409)
+.+.+++++|++.|+.+.+.. +.+...+..+...+...|++++|++.|+++.+..+. +...+..+...|
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHH
Confidence 457799999999999998886 345667778889999999999999999998876543 334444444444
Q ss_pred ----------------------------------HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 015329 126 ----------------------------------GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA 171 (409)
Q Consensus 126 ----------------------------------~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 171 (409)
...|++++|++.|++..+.. +-+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 23444444444444444332 1223334444444444444444444
Q ss_pred HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHHcCChhhHHH
Q 015329 172 FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVI---------TYTTLISAFYKDNRPEIGNG 242 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---------~~~~ll~~~~~~~~~~~a~~ 242 (409)
.+++...... .+...+..+...+...|+.++|...++.+......++.. .+..+...+...|+.++|..
T Consensus 517 ~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 517 LMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 4444332211 122222222233344444444444444432211111110 11123345556667777776
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015329 243 LWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL 322 (409)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 322 (409)
+++. .+.+...+..+...+.+.|++++|+..|++..+.... +...+..+...|...|++++|.+.++...+...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 6651 2456667778889999999999999999999987533 678889999999999999999999998876522
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 323 MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW--VP---SVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 323 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
.+...+..+..++...|++++|.+++++++...- .| +...+..+...+...|++++|.+.++....
T Consensus 669 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 -DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred -CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2456677788889999999999999999887531 22 234566677889999999999999999864
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=1.2e-13 Score=132.79 Aligned_cols=336 Identities=12% Similarity=-0.001 Sum_probs=228.9
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
+...|++++|+++|+.+.+.. +.++..+..++..+...++.++|++.++.+....+. ...+..++..+...++..+
T Consensus 112 y~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcchHHH
Confidence 334577777777777777766 334455556667777777777777777777655332 2233333344444555555
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHh--------------------------------------
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLME-------------------------------------- 175 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------------------------------------- 175 (409)
|++.++++.+.+ +-+...+..+..++.+.|-...|.++..+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 777777777664 33455555566665555544444433321
Q ss_pred ----------cCccCCCCcCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhH
Q 015329 176 ----------VPEKFHIQFDI-----FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240 (409)
Q Consensus 176 ----------~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 240 (409)
+....+-.|.. ....-.+-++...|++.++++.|+.+...|.+....+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 11111111221 112234456777888899999999998888766777888889999999999999
Q ss_pred HHHHHHHHhcC-----CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-------------CcCHH-HHHHHHHHH
Q 015329 241 NGLWNLMVCKG-----CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-------------EPDEV-TYNLVIKGF 301 (409)
Q Consensus 241 ~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------~p~~~-~~~~li~~~ 301 (409)
+.++..+.... ..++......|..+|...+++++|..+++++.+... .||-. .+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999886643 123444457788899999999999999999877321 22322 234456677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 015329 302 CRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKAN 381 (409)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 381 (409)
...|+..+|++.++++...... |......+...+...|.+.+|.+.++...... +-+..+......++...|++++|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHH
Confidence 8889999999999998776433 78888888889999999999999997655542 555667777888888899999999
Q ss_pred HHHHHHHhcCCCCCc
Q 015329 382 TIMALVQRRVPHFSS 396 (409)
Q Consensus 382 ~~~~~~~~~~~~~~~ 396 (409)
.+.+.+.+..|+...
T Consensus 505 ~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 505 LLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhhCCCchh
Confidence 999988888877653
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.75 E-value=2.3e-15 Score=132.82 Aligned_cols=303 Identities=13% Similarity=0.035 Sum_probs=244.8
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHH
Q 015329 55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHA 134 (409)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (409)
...|+.++|...+....+.. +.=..+|+.|...+-.+|++.+|++-|++..+..+.. .+.|-.|...|...+.+++|
T Consensus 195 ka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHHHhcchHH
Confidence 34567777777777666554 1223457777777888899999999999998876543 45555699999999999999
Q ss_pred HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329 135 MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQ 213 (409)
Q Consensus 135 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 213 (409)
+..|.+..... +-...++..+...|...|..+.|...+++..+. .|+ ...|+.|..++-..|++.+|.+.|.+..
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999987653 334567888999999999999999999876554 454 6689999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HH
Q 015329 214 KLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD-EV 292 (409)
Q Consensus 214 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~ 292 (409)
..... .....+.|.+.+...|.+++|..+|....+-. +.-...++.+...|-+.|++++|+..|++.... .|+ ..
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAd 423 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFAD 423 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHH
Confidence 87543 56778889999999999999999999988752 334567899999999999999999999999865 554 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS-VDTISALLEGL 371 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~ 371 (409)
.|+.+-..|-..|+.+.|.+.+.+.+..+.. -...++.|...|-.+|++.+|+.-+++.++. +|| +..|..++.++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 8899999999999999999999998876322 3467889999999999999999999998876 454 34555555443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=2.6e-13 Score=133.13 Aligned_cols=324 Identities=10% Similarity=-0.013 Sum_probs=241.6
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhC-C-CCCChhHHHHHHHHHHhcCC---hH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL-P-QGRREGFIMRIMMLYGKAGM---IK 132 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~ 132 (409)
+...++...+..+.+.. +-+......+.-...+.|+.++|.++++..... + ...+......++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 45555556666666553 346666777777788999999999999988753 1 12234555578888888766 33
Q ss_pred HHHHH-------------------------HHHhhhcCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC
Q 015329 133 HAMDT-------------------------FYDMHLYGCKR--TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD 185 (409)
Q Consensus 133 ~a~~~-------------------------~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (409)
++..+ +...... -++ +...|..+..++.. ++.++|...+.+.... .|+
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd 508 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPD 508 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCc
Confidence 33322 1111111 133 56677888877776 7777788866555444 356
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++...+.+ +.+...+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 544444555667899999999999998664 3444556677788899999999999999998864 3333344444445
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329 266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA 345 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 345 (409)
....|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++....... +...++.+..++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 55669999999999999877 457888999999999999999999999999987433 667788888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 346 YIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 346 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
...+++.++.. +-+...+..+..++...|++++|+..++++.+..|...
T Consensus 663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 99999988864 56778899999999999999999999999999887653
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=4.6e-14 Score=119.50 Aligned_cols=319 Identities=16% Similarity=0.201 Sum_probs=239.1
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH--HHhcCChHHH-HHHHHHhhhcC--------------
Q 015329 83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMML--YGKAGMIKHA-MDTFYDMHLYG-------------- 145 (409)
Q Consensus 83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~m~~~~-------------- 145 (409)
=+.++. ++.+|.+.++.-+|+.|...+...++.+-..|++. |....++--| .+.|-.|...|
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 344444 45678999999999999999988888876666543 2222222211 12232232211
Q ss_pred -----CCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015329 146 -----CKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD 220 (409)
Q Consensus 146 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 220 (409)
.+-+..+|..+|.++++-...+.|..++++.... ..+.+..+||.+|.+-.- ....+++.+|....+.||
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 2457789999999999999999999999887554 457789999999875432 223788999999999999
Q ss_pred HHHHHHHHHHHHHcCChhh----HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHH-HHHHHHH----HHcCCCc--
Q 015329 221 VITYTTLISAFYKDNRPEI----GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA-NKLMGLM----QRFGIEP-- 289 (409)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~----~~~~~~p-- 289 (409)
..|||+++++..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+. ..++.++ ..+.++|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998865 578889999999999999999999999999888553 3333333 3333333
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 015329 290 --DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR----LMPNR---KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360 (409)
Q Consensus 290 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 360 (409)
|...|...+..|....+.+-|.++..-..... +.|+. .-|..+....+.....+.....|+.|+-.-+-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 45667778888889999998888776655431 23332 2355677788888999999999999998888899
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 015329 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILS 407 (409)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (409)
..+...++++....|.++-..++|..++..+....+.....++..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999888876666555555554443
No 26
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=8.3e-14 Score=113.79 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=214.3
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh---hHHHHHHHHHHhcCCh
Q 015329 55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE---GFIMRIMMLYGKAGMI 131 (409)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 131 (409)
.-.+++++|.++|-.|.+.+ +.+..+.-+|.+.|.+.|..|+|+.+.+.+...+.-... .....|..-|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 34569999999999998866 455666778889999999999999999999876543322 2233577789999999
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHHH
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYLV 208 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~ 208 (409)
+.|+++|..+.+.| ..-......|+..|-...+|++|..+-+++.+-.+-+.. ...|.-+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998765 455667888999999999998888887655443222222 33466677777778889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 015329 209 MVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE 288 (409)
Q Consensus 209 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (409)
+.+..+.+.+ .+..--.+.+.....|+++.|.+.|+...+.+..--..+...+..+|...|+.++....+..+.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9998886543 344444566778889999999999999988865555677788888999999999999999888776433
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHhC
Q 015329 289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE---GDFNLAYIMCKDSMKK 355 (409)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 355 (409)
+ ..-..+...-....-.+.|..++.+-... +|+...+..+|..-... |...+-+.+++.|...
T Consensus 282 ~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 A--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred c--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 33344444444455566666666665554 68888888888876432 3355556666666543
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2e-16 Score=136.32 Aligned_cols=258 Identities=10% Similarity=0.063 Sum_probs=66.0
Q ss_pred HHHHHhcCCCchhHHHHHHHhhhCC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC
Q 015329 86 TVSRLAGARRFDYIEHLLEHQKSLP-QGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR 164 (409)
Q Consensus 86 li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 164 (409)
+...+.+.|++++|.++++...... ...+..+|..+...+...++++.|.+.++++...+ +-+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3555556666666666664332222 23344555555555555666666666666665544 2233444444444 4555
Q ss_pred CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhhHHHH
Q 015329 165 DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG-VKPDVITYTTLISAFYKDNRPEIGNGL 243 (409)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 243 (409)
++++|..++....++ .++...+..++..+.+.|+++++.++++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 92 ~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555333222 1233444455555555555555555555554321 223444455555555555555555555
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015329 244 WNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM 323 (409)
Q Consensus 244 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 323 (409)
+++..+.. +.|......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|..+|++..+...
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p- 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP- 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence 55555542 2234445555555555555555555555544432 22333444555555555555555555555544321
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 324 PNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 324 p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
.|......+..++...|+.++|.++.++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp T-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 1444445555555555555555555444
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=6.3e-13 Score=119.92 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=220.0
Q ss_pred cCCCchhHHHHHHHhhhCCCCCChhHHH-HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHH--HHHHHHHccCCHHH
Q 015329 92 GARRFDYIEHLLEHQKSLPQGRREGFIM-RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLN--AALKVLTESRDLKA 168 (409)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~ 168 (409)
..|+++.|++.+........ .+..+. ....+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 36999999988887655432 233333 3345558999999999999999764 55554333 34678899999999
Q ss_pred HHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChhhHH
Q 015329 169 IQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV-------ITYTTLISAFYKDNRPEIGN 241 (409)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~ 241 (409)
|...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999998876553 335677888999999999999999999999997765322 13333444444555666777
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015329 242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR 321 (409)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 321 (409)
++|+.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 777776543 3557888899999999999999999999999885 445532 23444456699999999999998774
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 322 LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 322 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
.. |...+..+...|.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+.+++....
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33 6667889999999999999999999999886 699999999999999999999999999987543
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=2.5e-16 Score=135.77 Aligned_cols=261 Identities=12% Similarity=0.027 Sum_probs=115.3
Q ss_pred HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329 52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (409)
..+...|++++|+++++........+.+...|..+.......++++.|++.++.+...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 4456789999999999655433211344455566666777889999999999999877655 66677778777 799999
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVE 211 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 211 (409)
++|.+++....+. .++...+..++..+...++++.+..+++........+.+...|..+...+.+.|+.++|++.|++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887554 35667788899999999999999999987655444566788899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329 212 MQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE 291 (409)
Q Consensus 212 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 291 (409)
..+.... |......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|...|++..+.. +.|.
T Consensus 172 al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 9987543 67788899999999999999999999988764 5677788899999999999999999999998864 2378
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
.....+..++...|+.++|+++..+...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8888999999999999999999887654
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=1.9e-12 Score=127.12 Aligned_cols=330 Identities=8% Similarity=-0.045 Sum_probs=243.4
Q ss_pred hhhhcCChHHHHHHHHHhhcC-CCCCCccchHHHHHHHHhcCCCc---hhHHHH----------------------HHHh
Q 015329 53 KLKAERDPEKLFQLFKANAHN-RIVIENKYAFEDTVSRLAGARRF---DYIEHL----------------------LEHQ 106 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~---~~a~~~----------------------~~~~ 106 (409)
.+...|+.++|.++|+..... +.-..+......++..+.+.+.. .++..+ ++..
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 355788999999999998763 21233333444667777666552 222222 2222
Q ss_pred hhC-CC-CC--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCC
Q 015329 107 KSL-PQ-GR--REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHI 182 (409)
Q Consensus 107 ~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (409)
... +. +. ....+..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|...++++...
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--- 538 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--- 538 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---
Confidence 211 11 22 55667777777776 8999999988887765 466554444455557899999999999876443
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
+|+...+..+...+.+.|++++|...|+...+.+.. +...+..+.......|++++|...+++..+. .|+...|..+
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L 615 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR 615 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 445555677788899999999999999999986522 3333334444455669999999999999886 4678899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
..++.+.|+.++|...+++..+.... +...++.+..++...|+.++|+..++...+.... +...+..+..++...|++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999988533 6778888888999999999999999999887433 677889999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 343 NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 343 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
++|...+++.++.. +-+..+.........+..++++|.+-+++....++..
T Consensus 694 ~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 694 AATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 99999999998764 2333555566677777788888888887766655443
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=7e-13 Score=119.60 Aligned_cols=287 Identities=10% Similarity=0.009 Sum_probs=220.3
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccch-HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYA-FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHA 134 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (409)
..|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+..+.............+...|+++.|
T Consensus 96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 3599999998888765543 22333 4334566689999999999999998764432222222346788999999999
Q ss_pred HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCH------HHHHHHHHHHHhcCChhHHHHH
Q 015329 135 MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDI------FSFNIVIKAFCEMGILDKAYLV 208 (409)
Q Consensus 135 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~ 208 (409)
.+.++++.+.+ +-+......+...|.+.|+++++..++..+.+.....++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876 5567889999999999999999999998776554333331 2333444444455566667777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 015329 209 MVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE 288 (409)
Q Consensus 209 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (409)
++.+.+. .+.+......+...+...|+.++|..+++...+. .++... .++.+....++.+++.+..+...+....
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7766543 2347788888999999999999999999999884 455532 2344555669999999999999887533
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
|...+..+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677888999999999999999999999976 79999999999999999999999999998654
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=9.5e-13 Score=119.42 Aligned_cols=291 Identities=11% Similarity=-0.019 Sum_probs=211.5
Q ss_pred hcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCH--HhHHHHHHHHHccCCHHH
Q 015329 91 AGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV--KSLNAALKVLTESRDLKA 168 (409)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 168 (409)
...|+++.|.+.+....+..+. ....+-....++.+.|+++.|.+.|.+..+. .|+. ..--.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 4679999999999887765432 2223334567788899999999999998765 3444 334445888889999999
Q ss_pred HHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCChhhHHHHH
Q 015329 169 IQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYT-TLISAF---YKDNRPEIGNGLW 244 (409)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~ 244 (409)
|...++.+.+.. +-+...+..+...+.+.|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+
T Consensus 172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999998886653 335667889999999999999999999999998765 333332 122222 2233333334455
Q ss_pred HHHHhcC---CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 245 NLMVCKG---CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVT---YNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 245 ~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 5554432 12378888999999999999999999999999874 33331 1222222344578888999998887
Q ss_pred hCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 319 GRRLMPNR--KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 319 ~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
+.... |. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++....
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76222 33 5567889999999999999999995333334799999999999999999999999999986543
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=8.7e-13 Score=119.64 Aligned_cols=290 Identities=12% Similarity=0.018 Sum_probs=212.6
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccch-HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYA-FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHA 134 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (409)
..|+++.|.+.+....+.. |++.. +-....+....|+.+.|.+.++...+..+.....+.......+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 5799999999999887665 55444 3445678888999999999999987654433333444467888999999999
Q ss_pred HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHH-HHHHH---HHHhcCChhHHHHHHH
Q 015329 135 MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSF-NIVIK---AFCEMGILDKAYLVMV 210 (409)
Q Consensus 135 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~---~~~~~g~~~~a~~~~~ 210 (409)
.+.++.+.+.+ +-+..++..+...+...|+++.+...+..+.+. +.. +...+ ..-.. .....+..+.+.+.+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999876 556778999999999999999999999777554 332 22222 11111 1233333333444555
Q ss_pred HHHhCCC---CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhh---HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 211 EMQKLGV---KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLAT---FNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 211 ~m~~~g~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
.+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 5554322 1378888899999999999999999999999863 44332 12222233445788889999988877
Q ss_pred cCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 285 FGIEPDE--VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 285 ~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6322 34 566688899999999999999999644444578999999999999999999999999998643
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=9.6e-14 Score=123.95 Aligned_cols=290 Identities=11% Similarity=-0.061 Sum_probs=225.3
Q ss_pred CchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCCCHHhHHHHHHHHHccCCH-HHHHH
Q 015329 95 RFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG--CKRTVKSLNAALKVLTESRDL-KAIQA 171 (409)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~-~~a~~ 171 (409)
+..+|..+|+.+...- .-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+.-.. -.+..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 4568888888855443 3345677788999999999999999999997753 122556777777665444333 33344
Q ss_pred HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329 172 FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG 251 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 251 (409)
+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.+.. ..++|+.+..-+.....+|.|...|+......
T Consensus 413 Li~~~------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 413 LIDTD------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHhhC------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 44221 225679999999999999999999999999986433 78999999999999999999999999887652
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQT 331 (409)
Q Consensus 252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 331 (409)
+.+-..|.-+...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|++++++......+ |+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 223445555778999999999999999999887643 6777778888899999999999999999887655 4444445
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329 332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
.+..+...+++++|+..++++.+. ++-+...+..+...|.+.|+.+.|+.-|.-+.+.+|.-.-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 566777899999999999998775 2444456677779999999999999999999988876543
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=3e-12 Score=118.21 Aligned_cols=326 Identities=12% Similarity=0.036 Sum_probs=256.0
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM 135 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (409)
..|+.++|.+++.++.++. +-....|.+|...|-..|+.+++...+-.+-...+. +...|..+.....+.|++++|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHH
Confidence 3499999999999999987 567788999999999999999999887766655544 6799999999999999999999
Q ss_pred HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329 136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD----IFSFNIVIKAFCEMGILDKAYLVMVE 211 (409)
Q Consensus 136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 211 (409)
-.|.+.++.. +++...+-.-...|-+.|+...|..-|.++....+ +.| ...--.+++.+...++-+.|.+.++.
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999876 56666666678889999999888888877755433 112 22334456778888888999998888
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---------------------------CCHhhHHHHH
Q 015329 212 MQKL-GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF---------------------------PNLATFNVRI 263 (409)
Q Consensus 212 m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~ll 263 (409)
.... +-..+...+++++..+.+...++.+......+...... ++...+ -++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 8762 22346777889999999999999999988888762222 222221 122
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD 341 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 341 (409)
-++...+..+....+.....+..+.| +...|.-+..+|.+.|++.+|+.+|..+......-+...|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34445555566666666666666433 5678899999999999999999999999988555578899999999999999
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 342 FNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 342 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
+++|.+.|+..+... +-+...--.|-..+.+.|+.++|.+.++.+.
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999988764 4556667777788999999999999999876
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=4e-12 Score=104.09 Aligned_cols=295 Identities=8% Similarity=0.020 Sum_probs=216.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCH------HhHHHH
Q 015329 83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV------KSLNAA 156 (409)
Q Consensus 83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l 156 (409)
|..=++.+ -+.+.++|.++|-+|.+..+. +..+..+|.+.|.+.|.++.|+.+-..+.++ ||. .....|
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 44444444 346789999999999875432 5566668999999999999999999998864 442 234556
Q ss_pred HHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHH
Q 015329 157 LKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV----ITYTTLISAFY 232 (409)
Q Consensus 157 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~ 232 (409)
.+-|...|-+|.|+.+|..+.+.... -......|+..|-...+|++|+++-+++.+.|..+.. ..|--+...+.
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 77788899999999999877654322 2456788999999999999999999999987654332 23444555555
Q ss_pred HcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329 233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK 312 (409)
Q Consensus 233 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (409)
...+.+.|..++.+..+.+ +..+..--.+-+.....|++.+|.+.++.+.+.+..--..+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6788999999999988864 333444445667888899999999999999998666567788899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHh
Q 015329 313 VYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN---NQPCKANTIMALVQR 389 (409)
Q Consensus 313 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 389 (409)
.+..+.+... +...-..+-+.-....-.+.|...+.+-+.. +|+...+..++..-... |...+....++.|..
T Consensus 271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 9999887733 3333444444444455566777766665655 69999999999776553 345555666666653
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.7e-12 Score=107.26 Aligned_cols=288 Identities=12% Similarity=0.012 Sum_probs=219.8
Q ss_pred CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCCHHhHHHHHHHHHccCCH-HHH
Q 015329 93 ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC--KRTVKSLNAALKVLTESRDL-KAI 169 (409)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~-~~a 169 (409)
....+++.+=.+.....|...+...-+....+.-...++++|+.+|+++.+.+. --|..+|..++-.--.+... -.|
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 334555555555566666554454444555566678889999999999877641 12556777766555444444 444
Q ss_pred HHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 170 QAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
..++ .+ .+ . -..|+.++.+.|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-++...+
T Consensus 320 ~~v~-~i-dK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 320 QNVS-NI-DK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHH-Hh-cc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 4444 33 22 2 3357778888899999999999999999998655 678899999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015329 250 KGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIY 329 (409)
Q Consensus 250 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 329 (409)
-+ +.|-..|-.+.++|.-.+.+.-|+-.|++..+.... |...|.+|..+|.+.++.++|++.|.+....|-. +...+
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l 469 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSAL 469 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHH
Confidence 74 778999999999999999999999999999887432 8899999999999999999999999999987654 67889
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHh----CCC-CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 330 QTMIHYLCQEGDFNLAYIMCKDSMK----KNW-VP-SVDTISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
..+.+.|-+.++.++|...|..-++ .|. .| ......-|..-+.+.+++++|..........
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999999988877655 242 22 2222333457788889999988877666554
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=5.9e-11 Score=100.25 Aligned_cols=289 Identities=13% Similarity=0.084 Sum_probs=227.6
Q ss_pred cCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 015329 92 GARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA 171 (409)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 171 (409)
..|+|..|+++...-.+.+..| .-.|..-..+.-..|+.+.+-.++.+..+..-.++....-...+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4699999999999877665542 233344567777899999999999999876336677778888888999999988877
Q ss_pred HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChhhHHHHH
Q 015329 172 FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV-------ITYTTLISAFYKDNRPEIGNGLW 244 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~ 244 (409)
-+++..+.. +...........+|.+.|++.....++..|.+.|.-.|. .+|+.+++-....+..+.-...|
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 776664432 335677889999999999999999999999999876554 35777777766666666666677
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC
Q 015329 245 NLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLM 323 (409)
Q Consensus 245 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~ 323 (409)
+..... .+.++..-.+++.-+.++|+.++|.++.++..+.+-.|+ -...-.+.+.++.+.-.+..+.-.+. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 776554 355677777889999999999999999999999877655 22234456778888888877776665 33
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 324 PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 324 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
++..+.+|...|.+.+.|.+|...|+..++. .|+..+|..+..++.+.|+.++|.++.++......
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 4477889999999999999999999987776 69999999999999999999999999988764443
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=6.2e-11 Score=100.13 Aligned_cols=288 Identities=12% Similarity=0.027 Sum_probs=230.8
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM 135 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (409)
..|++.+|..+..+..+.+ ......|.....+.-+.|+.+.+..++.+..+.....+..+..+..+.....|++..|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 3699999999999987776 23344566677888899999999999999998866667777778888999999999999
Q ss_pred HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-------HHHHHHHHHHHHhcCChhHHHHH
Q 015329 136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-------IFSFNIVIKAFCEMGILDKAYLV 208 (409)
Q Consensus 136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~ 208 (409)
.-++++.+.+ +..........++|.+.|++..+..+...+.+. +.--| ..+|+.+++-....+..+.-...
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999998876 667788999999999999999999999877544 44333 34677788777777777776677
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 015329 209 MVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE 288 (409)
Q Consensus 209 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (409)
++..... .+-++..-..++.-+.+.|+.++|.++..+..+.+..|+. ...-.+.+-++...-.+..++-.+....
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 7776543 2335666677888889999999999999999988766662 2334556677777777777766554322
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
++-.+..|-..|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.++.++.+..
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4577888999999999999999999977765 789999999999999999999999999887643
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=3.3e-12 Score=114.31 Aligned_cols=280 Identities=10% Similarity=0.056 Sum_probs=219.6
Q ss_pred ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCC--CChhHHHHHHHHHHhcCChHHHHH
Q 015329 59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQG--RREGFIMRIMMLYGKAGMIKHAMD 136 (409)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 136 (409)
+.++|+..|.....+. .-+......+..+|-..+++++|+++|+.+++..+- ...++|.+.+.-+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 6678999999854443 445577788899999999999999999999865432 236677777765432 22222
Q ss_pred HHHH-hhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 137 TFYD-MHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 137 ~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
.+.+ +.+.. +-.+.+|.++.++|.-.++.+.|.+.|++... +.| ..++|+.+..-+....++|.|...|+..+.
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2222 22222 56778999999999999999999999976543 455 688999999999999999999999999875
Q ss_pred CCCCCCHHHHHH---HHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329 215 LGVKPDVITYTT---LISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE 291 (409)
Q Consensus 215 ~g~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 291 (409)
.|...|++ +...|.+.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.++|++++++......+ |+
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 45566654 5667899999999999999999875 557777788888999999999999999999877544 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
..--.-...+...++.++|+..++++.+. .| +...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 44445566677789999999999999986 44 45668888999999999999999998887754
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=2.3e-11 Score=104.22 Aligned_cols=192 Identities=11% Similarity=-0.009 Sum_probs=133.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 015329 197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQAN 276 (409)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 276 (409)
..+|++++|.+.|++.+...-.-....||+ .-.+-..|++++|+..|-.+..- +..+......+...|....+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 346788888888888876533222233332 23356678888888888776542 2336666777777888888888888
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 277 KLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 277 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
+++.+.... ++-|+...+.|...|-+.|+-..|.+.+-+-..- +.-|..+...|..-|....-+++++.+|++.. -
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 887665443 2336777888888888888888888776554322 34467777777777777777888888887643 3
Q ss_pred CCCCHHHHHHHHH-HHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 357 WVPSVDTISALLE-GLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 357 ~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
+.|+..-|..++. ++.+.|++++|.++++.+.+++|..
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 5788888888774 4456788888888888888877654
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=3.6e-11 Score=100.85 Aligned_cols=203 Identities=12% Similarity=0.021 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3566777888888889999999988888775432 56677778888888899999999888888764 445667777888
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFN 343 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 343 (409)
.+...|++++|...+++.......+ ....+..+...+...|++++|...+++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 8888999999999998887643222 3456667778888899999999999988876322 4667888888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
+|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999988776 35567777778888888999999999888776653
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.50 E-value=6.3e-11 Score=110.46 Aligned_cols=284 Identities=12% Similarity=0.102 Sum_probs=192.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCCH------HhHHHHHHHHHccCCHHHHHHHHHhcCccCCC
Q 015329 112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY---GCKRTV------KSLNAALKVLTESRDLKAIQAFLMEVPEKFHI 182 (409)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (409)
.+...+.+.+...+...|++..|...|...... ...++. .+--.+....-..++.+.|...|.++...
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--- 525 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--- 525 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---
Confidence 345566666666666666666666666665443 111222 11122333444445666666666555444
Q ss_pred CcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCCCHhhHH
Q 015329 183 QFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG-CFPNLATFN 260 (409)
Q Consensus 183 ~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~ 260 (409)
.|. +..|--++......+...+|..+++...+..- .+...++.+.+.+.+...+..|..-|....+.- ..+|+.+.-
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 222 22233333223334566677777777766432 355666667777777777777777666655432 224666555
Q ss_pred HHHHHHHh------------cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 015329 261 VRIQHLVN------------KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKI 328 (409)
Q Consensus 261 ~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 328 (409)
.|.+.|.+ .+..++|+.+|.+.+..... |...-|.+.-.++..|++.+|..+|....+.... +..+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCce
Confidence 55555543 34567889999998887643 7888888999999999999999999999987442 4567
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHH
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDSMKK-NWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSA 401 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 401 (409)
|-.+..+|...|++..|+++|+...+. .-..+..+...|.+++.+.|.+.+|.+.+.......|..+...++.
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 889999999999999999999987665 3456788899999999999999999999999999988877665543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.8e-10 Score=97.08 Aligned_cols=309 Identities=10% Similarity=0.017 Sum_probs=228.3
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCC--CChhHHHHHHHHHHhcCCh
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQG--RREGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 131 (409)
+....+.+++++-.+.....| ++.+...-+....+.-...+++.|+.+|+++.+..+- .+-++|..++-. ++.+-
T Consensus 237 ~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 334457888888888887777 6666655556666777889999999999999977331 124556555433 32221
Q ss_pred HHHHHHHHHhh-hcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 015329 132 KHAMDTFYDMH-LYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVM 209 (409)
Q Consensus 132 ~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~ 209 (409)
.+..+..-. .-+ +-.+.|+..+.+-|+-.++.++|..+|+...+- .| ....|+.+.+-|....+...|++.+
T Consensus 314 --kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL---Np~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 --KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL---NPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred --HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc---CcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 122221111 111 455678888999999999999999999766433 33 3566999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329 210 VEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP 289 (409)
Q Consensus 210 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 289 (409)
++..+.+.. |-..|-.|.++|.-.+.+.-|+-.|++..... +.|...|.++..+|.+.++.++|++.|+.....|- .
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-t 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-T 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-c
Confidence 999987654 88999999999999999999999999998863 66899999999999999999999999999988773 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLM-P-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDT 363 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 363 (409)
+...+..|...|-+.++.++|...|+...+. |.. | ......-|..-+.+.+++++|..........
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------- 536 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------- 536 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------
Confidence 6788999999999999999999999887652 333 2 1222233455567788888887665543321
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 364 ISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
.-..++|..+++++.+...
T Consensus 537 ----------~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 ----------ETECEEAKALLREIRKIQA 555 (559)
T ss_pred ----------CchHHHHHHHHHHHHHhcC
Confidence 2345677777777665443
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=6.6e-11 Score=99.23 Aligned_cols=200 Identities=8% Similarity=-0.054 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK 194 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 194 (409)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.+...+++..... +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 4455556666667777777777777665543 3345566666667777777777777665554331 223455666667
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVK-PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW 273 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 273 (409)
.+...|++++|.+.|++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 777777777777777777653221 233455556666777777777777777776653 334556667777777777777
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
+|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777776652 33555566666777777777777777766654
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=1.8e-11 Score=112.89 Aligned_cols=253 Identities=11% Similarity=0.099 Sum_probs=179.9
Q ss_pred HHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 015329 65 QLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY 144 (409)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 144 (409)
+++..+...| +.|+..||..+|..|+..|+++.|- +|.-|.....+....+++.++.+....++.+.+.
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 3445555566 8899999999999999999999988 9999987777888999999999999999977766
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHH---HHHHHHhcCc---cCC-----------------CCcCHHHHHHHHHHHHhcCC
Q 015329 145 GCKRTVKSLNAALKVLTESRDLKA---IQAFLMEVPE---KFH-----------------IQFDIFSFNIVIKAFCEMGI 201 (409)
Q Consensus 145 ~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~---~~~-----------------~~~~~~~~~~ll~~~~~~g~ 201 (409)
.|...||..|+.+|...||... +++.+..+.. ..| .-||.. ..+....-.|.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 6888999999999999999844 3332211110 111 112221 12223334455
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 015329 202 LDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL 281 (409)
Q Consensus 202 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 281 (409)
|+.+++++..+....... ++...++-+.. ......++.+......-.|++.+|..++.+-...|+.+.|..++.+
T Consensus 155 waqllkll~~~Pvsa~~~---p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNA---PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHhhCCcccccc---hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 555555555443321111 11112333222 2233344444333322258999999999999999999999999999
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329 282 MQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD 341 (409)
Q Consensus 282 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 341 (409)
|.+.|+..+.+-|..|+.+ .++...+..+++.|.+.|+.|+..|+...+-.+...|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999898888888876 78888899999999999999999999988888877655
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=4.2e-13 Score=81.84 Aligned_cols=49 Identities=35% Similarity=0.713 Sum_probs=31.2
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFY 232 (409)
Q Consensus 184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 232 (409)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=3.9e-10 Score=96.84 Aligned_cols=275 Identities=12% Similarity=0.041 Sum_probs=199.0
Q ss_pred HhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH--hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329 90 LAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG--KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK 167 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 167 (409)
+.+.|+++.|.++++-+.+..........+.|-..+. --.++..|.+.-+.....+ +-+......-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 4577788888888777765543333333333322222 2335666666655554332 223333222233344578899
Q ss_pred HHHHHHHhcCccCCCCcCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 015329 168 AIQAFLMEVPEKFHIQFDIFSFNIV---IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLW 244 (409)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 244 (409)
+|..++++.... |..+-.+| .-.+-..|++++|++.|-++...= .-+..+.-.+.+.|-...+..+|++++
T Consensus 508 ka~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 508 KAAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred HHHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 999999877554 43332222 235778899999999998876532 236777778888999999999999999
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015329 245 NLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP 324 (409)
Q Consensus 245 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 324 (409)
.+.... ++.|+...+-+...|-+.|+-.+|+..+-+-... ++.+..+...|...|....-+++++.+|++..- +.|
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 877664 5678899999999999999999998876654433 244788889999999999999999999998653 589
Q ss_pred CHHHHHHHHHHHH-HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 325 NRKIYQTMIHYLC-QEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 325 ~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
+..-|..||..|. +.|++.+|+.++++..+ .++-|..++..|++.+...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 9999999987775 58999999999999766 468899999999999988885
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.42 E-value=3.4e-09 Score=98.48 Aligned_cols=335 Identities=14% Similarity=0.113 Sum_probs=251.4
Q ss_pred HHHHh-hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh
Q 015329 49 PALVK-LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK 127 (409)
Q Consensus 49 ~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (409)
..|.. ....|+.++++..+-.+...+ +.|...|..+.....+.|.+++|.-.|....+..+. +-..+-.=+..|-+
T Consensus 177 ~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 177 YTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQK 253 (895)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHH
Confidence 33443 445689999999888776655 556688999999999999999999999999987655 34444446778999
Q ss_pred cCChHHHHHHHHHhhhcCCCCCHHhHHH----HHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329 128 AGMIKHAMDTFYDMHLYGCKRTVKSLNA----ALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD 203 (409)
Q Consensus 128 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 203 (409)
.|+...|.+.|.++....-+.|..-+.. .+..+...++.+.|.+.++......+-..+...+++++..|.+...++
T Consensus 254 ~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHH
Confidence 9999999999999987753233333333 345566677778888888766664444456667889999999999999
Q ss_pred HHHHHHHHHHhCCCCC---------------------------CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCC
Q 015329 204 KAYLVMVEMQKLGVKP---------------------------DVITYTTLISAFYKDNRPEIGNGLWNLMVCKG--CFP 254 (409)
Q Consensus 204 ~a~~~~~~m~~~g~~~---------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~ 254 (409)
.|......+......+ +..++ -++-++.+.+..+....+...+.+.+ ..-
T Consensus 334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d 412 (895)
T KOG2076|consen 334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSD 412 (895)
T ss_pred HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhh
Confidence 9999888887622222 22221 23334455666666666676676666 334
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
+...|.-+..+|...|++..|+.+|..+......-+...|-.+..+|-..|.+++|.+.|+..+..... +...--.|..
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Las 491 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLAS 491 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHH
Confidence 667888899999999999999999999988755557889999999999999999999999999876322 4455567778
Q ss_pred HHHHcCCHhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 335 YLCQEGDFNLAYIMCKDSMK--------KNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
.+.+.|+.++|.+.+..+.. .++.|+..........+.+.|+.++-..+...|.
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88899999999999988542 3466777777778888999999887666655554
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.42 E-value=2.5e-09 Score=100.09 Aligned_cols=327 Identities=10% Similarity=-0.011 Sum_probs=234.1
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM 135 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (409)
...+.+.|...|....+.. +++...+-.-.......|++-.|..+|..+....+...++....+..++.+.|+.+.|+
T Consensus 142 ~~~~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 142 GDKSMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred CCccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHH
Confidence 3444799999999998886 34444333333444567899999999999887766656666656667888999999999
Q ss_pred HHHHHhhhcCCCCCHHhHHHHHHHHHccCCH---HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015329 136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDL---KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEM 212 (409)
Q Consensus 136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 212 (409)
..|.+..+.+ +-+..++..|...-....+. ..+...+...-...+- ++...+.|.+.|.-.|++..+..+...+
T Consensus 220 ~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 220 LAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 9999998764 22333333333333333333 4455554433333333 5667888999999999999999999998
Q ss_pred HhCCCC--CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC
Q 015329 213 QKLGVK--PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD 290 (409)
Q Consensus 213 ~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 290 (409)
...... .-...|-.+..+|...|++++|...|.+..+..-..-+..+--+.+.|.+.|+.+.+...|+.+.+... -+
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~ 375 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NN 375 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-ch
Confidence 875321 123457788999999999999999998887754222234455678999999999999999999988742 25
Q ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH----HhCCCCCCHH
Q 015329 291 EVTYNLVIKGFCRSG----HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS----MKKNWVPSVD 362 (409)
Q Consensus 291 ~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~ 362 (409)
..+..+|...|+..+ ..++|..++.+..+.- .-|...|-.+...+-.. +...++.++... ...+-.+.++
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 667777777777665 4567777777766653 23677777777776544 443336665544 4456668889
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
..+.+.......|+++.|...|+.....
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 9999999999999999999999998766
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=1.2e-09 Score=100.00 Aligned_cols=290 Identities=12% Similarity=0.119 Sum_probs=207.7
Q ss_pred HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhc---
Q 015329 52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKA--- 128 (409)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 128 (409)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+...++. +...|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 4466789999999999886544 3334455667789999999999999999999988664 667777777766333
Q ss_pred --CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH-HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHH
Q 015329 129 --GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL-KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKA 205 (409)
Q Consensus 129 --~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 205 (409)
.+.+...++|+++... -|.......+.-.+.....+ ..+..++.....+ |+++ +|+.+-..|....+.+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHHHH
Confidence 3578888899988665 35444443333333332333 5566666555444 6543 566666667655555555
Q ss_pred HHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHh
Q 015329 206 YLVMVEMQKL----G----------VKPDVI--TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LATFNVRIQHLVN 268 (409)
Q Consensus 206 ~~~~~~m~~~----g----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 268 (409)
.+++...... | -.|+.. ++..+...|-..|++++|+++++..++. .|+ +..|..-...+-.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 6666655432 1 123443 4455667788899999999999999987 454 6778888899999
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHHcC
Q 015329 269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIY--------QTMIHYLCQEG 340 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g 340 (409)
.|++.+|.+.++...+.... |...-+..+..+.++|++++|.+++....+.+..|-...+ .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988754 8888888899999999999999999998877654422221 33467888999
Q ss_pred CHhHHHHHHHHHH
Q 015329 341 DFNLAYIMCKDSM 353 (409)
Q Consensus 341 ~~~~a~~~~~~m~ 353 (409)
++..|++.|....
T Consensus 320 ~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 320 DYGLALKRFHAVL 332 (517)
T ss_pred hHHHHHHHHHHHH
Confidence 9998887666544
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7e-13 Score=80.86 Aligned_cols=42 Identities=36% Similarity=0.517 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 299 (409)
+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=1.4e-08 Score=91.43 Aligned_cols=336 Identities=11% Similarity=0.021 Sum_probs=234.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhc
Q 015329 49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKA 128 (409)
Q Consensus 49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (409)
..-..+.+.+..+-|..+|....+-. +.+...|......=-..|..++...+|+++...-+ ..+..|.-....+-..
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKA 597 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhc
Confidence 33344556666777777777776553 44555666666666667777777777777765533 2555665556667777
Q ss_pred CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 015329 129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLV 208 (409)
Q Consensus 129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 208 (409)
|++..|..++....+.. +-+...|-..+..-....+++.|..+|..... ..|+...|.--++.---.++.++|.++
T Consensus 598 gdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred CCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 88888888888777664 33566777777777888888888888865433 455666666666666667778888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 015329 209 MVEMQKLGVKPD-VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI 287 (409)
Q Consensus 209 ~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 287 (409)
+++..+. -|+ ...|-.+...+-+.++.+.|...|..-.+. ++...-.|-.+...=-+.|.+..|..+++...-.+.
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 8777764 333 345666666777777777777777665543 334445566666666667778888888888776654
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------------------CCCCHHHHHHHHHHHHH
Q 015329 288 EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----R-------------------------LMPNRKIYQTMIHYLCQ 338 (409)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-------------------------~~p~~~~~~~li~~~~~ 338 (409)
+ +...|-..|+.-.+.|+.+.|..++.+.++. | +.-|......+...+..
T Consensus 751 k-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 751 K-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred C-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 3 6777777888888888888777766655443 1 23356666677777788
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329 339 EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
..++++|.+.|.+.++.+ +-+..+|..+...+.+.|.-+.-.++++......|....
T Consensus 830 e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred HHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence 888999999999988876 556678888889999999988889999988888777654
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=8.1e-11 Score=96.78 Aligned_cols=237 Identities=12% Similarity=0.085 Sum_probs=176.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 015329 154 NAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYT-TLISAFY 232 (409)
Q Consensus 154 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~ 232 (409)
+.+.++|.+.|-+..|++.++...+. .|-+.||-.|-+.|.+..++..|+.+|.+-.+. .|-.+||. -+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 56778888888888888888666555 456667878888888888888888888887765 34445543 3445666
Q ss_pred HcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329 233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK 312 (409)
Q Consensus 233 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (409)
..++.++|.++++...+.. +.++....++...|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|...+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 6788888888888887753 446666667777777788888888888888888876 77788888888888888888888
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 313 VYSAMLGRRLMPN--RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 313 ~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
-|.+....--.|+ ..+|-.+-...+..|++..|.+.|+-.+..+ ......++.|...-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8887766533333 3456667777777888888888888776654 456678888888888888888888888888887
Q ss_pred CCCCCchh
Q 015329 391 VPHFSSNQ 398 (409)
Q Consensus 391 ~~~~~~~~ 398 (409)
.|..-...
T Consensus 459 ~P~m~E~~ 466 (478)
T KOG1129|consen 459 MPDMAEVT 466 (478)
T ss_pred Cccccccc
Confidence 77654443
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=3.4e-10 Score=106.79 Aligned_cols=252 Identities=7% Similarity=-0.029 Sum_probs=155.7
Q ss_pred CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHH---------ccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc
Q 015329 129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLT---------ESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM 199 (409)
Q Consensus 129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 199 (409)
+.+++|.+.|++..+.. +-+...|..+..++. ..++.++|...+++..+.. +-+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 45778888888877653 223445555544433 2233577777776654432 22456677777778888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329 200 GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLM 279 (409)
Q Consensus 200 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 279 (409)
|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.+ +.+...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 8888888888888876533 56667777788888888888888888887763 222223333444566678888888888
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-C
Q 015329 280 GLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-W 357 (409)
Q Consensus 280 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~ 357 (409)
+++.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+.. -
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 88766532223445666777777888888888888876654 333 333445555666666 46666666655431 1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 358 VPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
.+....+ +-..+.-.|+.+.+..+ +++.+.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 1221222 33344455666666655 66665543
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=4.4e-10 Score=106.04 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=158.7
Q ss_pred CCCHHhHHHHHHHHH-----ccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHh---------cCChhHHHHHHHH
Q 015329 147 KRTVKSLNAALKVLT-----ESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCE---------MGILDKAYLVMVE 211 (409)
Q Consensus 147 ~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~ 211 (409)
..+...|...+++.. ..++.+.|..++++..+. .|+ ...|..+..+|.. .+++++|...+++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 345555555555532 124468888888766544 343 4455555554432 2447889999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329 212 MQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE 291 (409)
Q Consensus 212 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 291 (409)
..+.+.. +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +.
T Consensus 330 Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 8887544 67778888888888899999999999988874 445667788888888999999999999998877433 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVD-TISALLEG 370 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~ 370 (409)
..+..+...+...|++++|...+++..+....-+...+..+..++...|++++|...+.++... .|+.. ..+.+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHH
Confidence 2333344456667889999999888776532224455677777888899999999998886554 34433 34444456
Q ss_pred HHhCCChHHHHHHHHHHHh
Q 015329 371 LKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~ 389 (409)
|...| +.|...++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 485 YCQNS--ERALPTIREFLE 501 (553)
T ss_pred HhccH--HHHHHHHHHHHH
Confidence 66666 467666666554
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=4.4e-08 Score=88.26 Aligned_cols=332 Identities=8% Similarity=0.020 Sum_probs=167.3
Q ss_pred HHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHH----hhhCCCCCChhHHHHHHHHH
Q 015329 50 ALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEH----QKSLPQGRREGFIMRIMMLY 125 (409)
Q Consensus 50 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~ 125 (409)
+..++++...++.|-.+++.+.+. ++.+...|.+....=-..|+.+...++++. +...|...+..-|..=...|
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 334455555666666666666554 355666666655555566666666666554 23445555555555445555
Q ss_pred HhcCChHHHHHHHHHhhhcCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329 126 GKAGMIKHAMDTFYDMHLYGCKR--TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD 203 (409)
Q Consensus 126 ~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 203 (409)
-..|..-.+..+....+..|+.- ...||+.-.+.|.+.+.++-+..+|.....-+ +-+...|......=-..|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHH
Confidence 55555555555555555544432 12355555555555555555555553332221 112333444443334445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329 204 KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 283 (409)
....+|++....-.+ ....|-.....+-..|++..|..++.+..+.. +.+...|-..+..-....+++.|..+|.+..
T Consensus 568 sl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 555555555544222 33444444444555556666655555555543 2244455555555555555555555555554
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------------------------------HHH
Q 015329 284 RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-----------------------------------RKI 328 (409)
Q Consensus 284 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------------------------------~~~ 328 (409)
.. .|+...|.--+..--..++.++|.+++++.++. .|+ ...
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 43 334444444444444445555555555544433 222 223
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
|-.+...=-+.|++-.|..++++..-++ +-+...|-..|++-.+.|+.+.|..++.++.+..|
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3333333344455555555555544443 34455555555555566666666555555555443
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=3.5e-09 Score=96.92 Aligned_cols=294 Identities=15% Similarity=0.073 Sum_probs=206.9
Q ss_pred HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhH-HHHHHHHHcc--
Q 015329 87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSL-NAALKVLTES-- 163 (409)
Q Consensus 87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~-- 163 (409)
...+...|++++|++.++.-... ......+.......+.+.|+.++|..+|..+.+.+ |+...| ..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 35567889999999999876544 22246667778899999999999999999999986 555555 4454544222
Q ss_pred ---CCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329 164 ---RDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD-KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI 239 (409)
Q Consensus 164 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 239 (409)
.+.+....+++++.... |.......+.-.+.....+. .+...+..+...|++ .+|+.|-..|....+.+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 24578888887775553 33323222222222222333 455667777788865 456666666665555555
Q ss_pred HHHHHHHHHhc----C----------CCCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHH
Q 015329 240 GNGLWNLMVCK----G----------CFPNL--ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD-EVTYNLVIKGFC 302 (409)
Q Consensus 240 a~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~ 302 (409)
...++..+... + -.|+. .++.-+.+.|...|++++|+.++++..+. .|+ +..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 55555555432 1 12444 34466678888999999999999999887 454 677888889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHhC
Q 015329 303 RSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDT------I--SALLEGLKKN 374 (409)
Q Consensus 303 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------~--~~l~~~~~~~ 374 (409)
+.|++++|.+.++..+..+.. |..+=+..+..+.+.|++++|.+++....+.+..|.... | .-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988665 777778888999999999999999998877664333221 1 2234789999
Q ss_pred CChHHHHHHHHHHHhcCC
Q 015329 375 NQPCKANTIMALVQRRVP 392 (409)
Q Consensus 375 g~~~~a~~~~~~~~~~~~ 392 (409)
|++..|++.+..+.+...
T Consensus 319 ~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKHFD 336 (517)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999888887765543
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.8e-09 Score=91.06 Aligned_cols=292 Identities=9% Similarity=-0.009 Sum_probs=146.8
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCc-cchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIEN-KYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK 132 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (409)
+-+++.+++|++++.+.+... || +.-|....-+|...|+++++.+--......++.. ...+..=.+++-..|+++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHhhccHH
Confidence 557789999999999999876 77 7778888999999999999888877776554321 122222334444455555
Q ss_pred HHHH----------------------HHHHh---------hhcC--CCCCHHhHHHHHHHHHc-----------------
Q 015329 133 HAMD----------------------TFYDM---------HLYG--CKRTVKSLNAALKVLTE----------------- 162 (409)
Q Consensus 133 ~a~~----------------------~~~~m---------~~~~--~~~~~~~~~~ll~~~~~----------------- 162 (409)
+|+. ++++. .+.+ +-|+.....+....+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l 280 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL 280 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence 4442 22211 1011 22333333333332210
Q ss_pred --------cC---CHHHHHHHHHhcCccCCCCc--C---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015329 163 --------SR---DLKAIQAFLMEVPEKFHIQF--D---------IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD 220 (409)
Q Consensus 163 --------~~---~~~~a~~~~~~~~~~~~~~~--~---------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 220 (409)
.+ .+..+...+.+-....-..+ + ..+.....-.+.-.|+.-.|.+-|+..++....++
T Consensus 281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~ 360 (606)
T KOG0547|consen 281 AEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN 360 (606)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc
Confidence 00 11111111111100000011 1 22222222334445666666666666666543322
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 015329 221 VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300 (409)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 300 (409)
..|--+..+|....+.++....|+...+.+ +-|+.+|..-.+.+.-.+++++|..=|++....... +...|--+..+
T Consensus 361 -~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a 437 (606)
T KOG0547|consen 361 -SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCA 437 (606)
T ss_pred -hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHH
Confidence 224445555666666666666666665543 334455555555555555555555555555444221 33344444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+..+
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 44455555555555555443 22233445555555555555555555555443
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=3.8e-10 Score=92.91 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=193.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh
Q 015329 119 MRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE 198 (409)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 198 (409)
..+..+|.+.|.+.+|.+.|+..++. .|-+.||-.|-+.|.+..+++.|..++.+-.+.+ +-|+....-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHH
Confidence 36889999999999999999998775 6778899999999999999999999997766553 2344445567788889
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329 199 MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL 278 (409)
Q Consensus 199 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 278 (409)
.++.++|.++|+...+.... ++.....+...|.-.++++-|+..++.+.+.|+ -+...|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999986533 677777888888999999999999999999995 5788899999999999999999999
Q ss_pred HHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 279 MGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 279 ~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
|.+....-..|+ ...|-.+-......||+..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999877654454 346767777778899999999999998877544 6788999988889999999999999976654
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=5.3e-08 Score=84.51 Aligned_cols=321 Identities=10% Similarity=0.039 Sum_probs=199.3
Q ss_pred cCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 015329 57 ERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMD 136 (409)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (409)
+++.+.|..+|+++...+ ..+...|...+.+=.+...+..|..+++.....-+..+ .+|-..+..=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 456777999999998776 45666677788888899999999999998887644433 344445555556899999999
Q ss_pred HHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329 137 TFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG 216 (409)
Q Consensus 137 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 216 (409)
+|.+..+- .|+...|++.++.=.+...++.|..+++...- +.|++.+|--..+.=-+.|.+..+..+|+...+.=
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99998765 79999999999999999999999999976643 36888888888888888898888888888776521
Q ss_pred CCCCHHHHHHHHHHHH----HcCChhhHHHHHHHHHhc------------------------C-----------------
Q 015329 217 VKPDVITYTTLISAFY----KDNRPEIGNGLWNLMVCK------------------------G----------------- 251 (409)
Q Consensus 217 ~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~m~~~------------------------~----------------- 251 (409)
.|...-..+..+++ +++.++.|.-+|.-..+. |
T Consensus 238 --~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 238 --GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 12222222222222 233333333333222111 0
Q ss_pred --CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc----------------------------------------
Q 015329 252 --CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP---------------------------------------- 289 (409)
Q Consensus 252 --~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---------------------------------------- 289 (409)
.+-|-.+|--.+..-...|+.+...++|+.....-.+.
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 12244455555555555666666666666655432111
Q ss_pred ---CHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 015329 290 ---DEVTYNLVIKG----FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVD 362 (409)
Q Consensus 290 ---~~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 362 (409)
...||.-+=-. -.++.++..|.+++...+ |..|-..+|...|..-.+.+++|....++++.++-+ +-+..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 11111111111 123344455555554443 445566666666666666666666666666666554 44555
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
+|......-...|+.+.|..+|+.+...
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 6666655556666666666666655544
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=4.1e-09 Score=91.22 Aligned_cols=95 Identities=9% Similarity=-0.120 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
|..+...|...|++++|...|++..+.... +...|+.+...+...|++++|...|+...+.. +-+..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 444445555555555555555555554322 34555555555555555555555555555432 2233444445555555
Q ss_pred cCCHhHHHHHHHHHHHc
Q 015329 269 KRRSWQANKLMGLMQRF 285 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~ 285 (409)
.|++++|.+.|+...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555544
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=3.6e-10 Score=104.52 Aligned_cols=251 Identities=14% Similarity=0.048 Sum_probs=175.4
Q ss_pred HHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccC
Q 015329 101 HLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180 (409)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 180 (409)
.++-.+...|..|+..+|.++|.-|+..|+++.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556777888899999999999999999999999 9999988888888899999999998888776554
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhH---HHHHHHHHH----hCCCCCCHHHHHHHHHHH--------------HHcCChhh
Q 015329 181 HIQFDIFSFNIVIKAFCEMGILDK---AYLVMVEMQ----KLGVKPDVITYTTLISAF--------------YKDNRPEI 239 (409)
Q Consensus 181 ~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~----~~g~~~~~~~~~~ll~~~--------------~~~~~~~~ 239 (409)
.|...+|..|..+|...||+.. +.+.+.... ..|+......+-..+.++ .-.|.++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5678899999999999999765 222122111 233321111111111111 11222333
Q ss_pred HHHHHHHHHhcCCCCCHhhHH---HHHHHHHhcCC-HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329 240 GNGLWNLMVCKGCFPNLATFN---VRIQHLVNKRR-SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYS 315 (409)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (409)
+++++..+ |...-++ .+++-+..... +++...+-+...+ .|+..+|.+++.+-...|+++.|..++.
T Consensus 158 llkll~~~------Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 158 LLKLLAKV------PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHhhC------CcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33333222 2221111 12443333322 2222222222222 5899999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 316 AMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 316 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
+|.+.|+..+..-|..++-+ .++..-+..+++-|.+.|+.|+..|+...+..+.++|.
T Consensus 229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999988888888766 78888889999999999999999999999988888666
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.4e-08 Score=88.37 Aligned_cols=273 Identities=8% Similarity=-0.069 Sum_probs=207.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK 194 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 194 (409)
..+...-..-+...+++++..++++...+.. ++....+..-|.++...|+......+-.++.+.. +-.+.+|-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHH
Confidence 3444455566778999999999999998876 6777778777888999998866666655665542 335678999998
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ 274 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 274 (409)
.|...|+..+|.+.|.+....+.. =...|-....+|+-.|..++|+..+...-+. ++-..--+--+..-|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 899999999999999998764322 2457888889999999999999988776653 11111112224446778899999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC----CCCHHHHHHHHHHHHHcCCHhHHHHH
Q 015329 275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR--RL----MPNRKIYQTMIHYLCQEGDFNLAYIM 348 (409)
Q Consensus 275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----~p~~~~~~~li~~~~~~g~~~~a~~~ 348 (409)
|.++|.+...... -|+..++-+.-.....+.+.+|..+|+..... .+ ..-..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999988876532 26777777777777788999999999887632 11 11345678888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 349 CKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 349 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
++..+... +.+..++..+.-.|...|+++.|.+.|.+.....|..
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99888764 6788899999999999999999999999988877665
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=1.3e-08 Score=92.18 Aligned_cols=238 Identities=12% Similarity=0.071 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhc-----C-CCCCHHh-HHHHHHHHHccCCHHHHHHHHHhcCcc----CC-CC
Q 015329 116 GFIMRIMMLYGKAGMIKHAMDTFYDMHLY-----G-CKRTVKS-LNAALKVLTESRDLKAIQAFLMEVPEK----FH-IQ 183 (409)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~ 183 (409)
.+...+...|...|+++.|+.++....+. | ..|...+ .+.+...|...+++++|..+|+++... .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666777777777777777665443 1 1233332 334666667777776666666544221 11 12
Q ss_pred cC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCC-CCH-HHHHHHHHHHHHcCChhhHHHHHHHHHhcC---C
Q 015329 184 FD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKL-----GVK-PDV-ITYTTLISAFYKDNRPEIGNGLWNLMVCKG---C 252 (409)
Q Consensus 184 ~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~ 252 (409)
|. ..+++.|...|.+.|++++|...+++..+. |.. |.+ ..++.+...|+..+++++|..+++...+.- .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 445777777788888887777777665531 221 111 224556666777888888887777654321 1
Q ss_pred C----CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC--Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 015329 253 F----PNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GI--EP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLG-- 319 (409)
Q Consensus 253 ~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 319 (409)
. --..+++.+-..|...|++++|.+++++.... +. .+ ....++.|...|.+.+.+++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 1 12367788888888888888888888877542 11 11 244667777888888888888877776432
Q ss_pred --CCCC-CC-HHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 320 --RRLM-PN-RKIYQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 320 --~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
.|.. |+ ..+|..|...|...|+++.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2322 23 3567888888888888888888777654
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=6.1e-08 Score=76.39 Aligned_cols=203 Identities=11% Similarity=0.007 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV 267 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (409)
+..-+.-.|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|+...... +-+..+.|..---+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3455666788888888888888888887544 66778888888888888888888888887763 445667777777888
Q ss_pred hcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329 268 NKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 346 (409)
..|++++|...|+.....-.-+ -..+|..+.-+..+.|+.+.|.+.|++..+.... ...+...+.+...+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887643222 2456777777778888888888888888877433 3455677778888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 347 IMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
.+++.....+ .++..+....|+.-.+.|+.+.+-+.=..+.+..|..
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 8888766655 4888888888888888888888888877777777654
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=5.6e-07 Score=78.32 Aligned_cols=330 Identities=11% Similarity=0.022 Sum_probs=209.9
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM 135 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (409)
..|+...|.++|+.-.. ..|+..+|.+.|+.=.+-..++.|..+++...-. .|....|......=.++|++..|.
T Consensus 153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 34677777777775543 3477777777777777777777777777776543 245555555555566677777777
Q ss_pred HHHHHhhhc-CC-CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc-----------------------CC---------
Q 015329 136 DTFYDMHLY-GC-KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK-----------------------FH--------- 181 (409)
Q Consensus 136 ~~~~~m~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------~~--------- 181 (409)
.+|....+. |- ..+...+.+....=..+..++.+..+|+-..+. .|
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 766665432 10 001111111111111222223333322111000 00
Q ss_pred ----------CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHH-----HHHHHH---HHcCChhhHH
Q 015329 182 ----------IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV--ITYT-----TLISAF---YKDNRPEIGN 241 (409)
Q Consensus 182 ----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~-----~ll~~~---~~~~~~~~a~ 241 (409)
-+-|-.+|-..++.-...|+.+...++|++.... ++|-. ..|. -+=-++ ....+++.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1224455666666666667777777777777654 22211 1111 111111 2356777777
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHH----hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015329 242 GLWNLMVCKGCFPNLATFNVRIQHLV----NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAM 317 (409)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (409)
++++...+. ++....||.-+=-.|+ ++.++..|.+++.... |..|-..+|...|..-.+.++++.+..+|++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777763 4445556655444443 5677888888877665 55888899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 318 LGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-WVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 318 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
++-+.. |..+|......-...|+.+.|..+|.-.+.+. +......|.+.|+--...|.++.|..+++.+.+......
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 988655 67788888887788999999999999888763 334556788888888889999999999999988765543
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=3.5e-08 Score=77.75 Aligned_cols=194 Identities=9% Similarity=-0.089 Sum_probs=95.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc
Q 015329 120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM 199 (409)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 199 (409)
.|.-.|...|+...|.+-+++.++.+ +-+..+|..+...|.+.|+.+.|.+.|+..+.-. +-+..+.|.....+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhC
Confidence 34445555555555555555555443 2333455555555555555555555554332211 11234455555555555
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329 200 GILDKAYLVMVEMQKLGVK-PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL 278 (409)
Q Consensus 200 g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 278 (409)
|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++-.+.. +-...+.-.+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 5555555555555543111 123445555555555555555555555555442 22233444445555555555555555
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
++.....+. ++..+....|+.-...|+.+.+-++=..+.
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555554443 455555555555555555555554444443
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=3e-07 Score=82.51 Aligned_cols=308 Identities=10% Similarity=-0.059 Sum_probs=187.1
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCCC-CCCh-hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHH---H
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQ-GRRE-GFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNA---A 156 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l 156 (409)
.|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 455555666667777776666665543322 2221 222223445677899999999999987763 334444442 1
Q ss_pred HHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329 157 LKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN 235 (409)
Q Consensus 157 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 235 (409)
.......+..+.+...+... .+..|+ ......+...+...|++++|.+.+++..+.... +...+..+...+...|
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 11122234455566655331 122333 444556677889999999999999999987543 5677888889999999
Q ss_pred ChhhHHHHHHHHHhcCC-CCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcCHHHH-H--HHHHHHHhcCCHH
Q 015329 236 RPEIGNGLWNLMVCKGC-FPNL--ATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-EPDEVTY-N--LVIKGFCRSGHLD 308 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~g~~~ 308 (409)
++++|...++....... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999998877532 1232 3455678889999999999999999864432 1122211 1 2233334444433
Q ss_pred HHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhCCC
Q 015329 309 MAKKV--YSAMLGRRL--MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWV--------PSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 309 ~a~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--------~~~~~~~~l~~~~~~~g~ 376 (409)
.+.+. +........ ............++...|+.++|..+++.+...... ...........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33332 211111110 111122235666778889999999999887653211 112222223355678999
Q ss_pred hHHHHHHHHHHHhcCCCC
Q 015329 377 PCKANTIMALVQRRVPHF 394 (409)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~ 394 (409)
.++|.+.+..........
T Consensus 323 ~~~A~~~L~~al~~a~~~ 340 (355)
T cd05804 323 YATALELLGPVRDDLARI 340 (355)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999887665444
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=8.7e-08 Score=83.48 Aligned_cols=302 Identities=11% Similarity=-0.001 Sum_probs=205.5
Q ss_pred HHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-HHhHHHHHHHHHcc
Q 015329 85 DTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT-VKSLNAALKVLTES 163 (409)
Q Consensus 85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~ 163 (409)
...+-|.+.|.+++|++.|.+.....+. .+.+|.....+|...|+|+++.+--.+.++. .|+ +..+..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 3456678999999999999999876432 2788889999999999999999988777764 344 23555555556555
Q ss_pred CCHHHHHH----------------------HHH--------h-cC-ccCCCCcCHHHHHHHHHHHHh-------------
Q 015329 164 RDLKAIQA----------------------FLM--------E-VP-EKFHIQFDIFSFNIVIKAFCE------------- 198 (409)
Q Consensus 164 ~~~~~a~~----------------------~~~--------~-~~-~~~~~~~~~~~~~~ll~~~~~------------- 198 (409)
|+++++.. +++ + +. .+..+-|+....++....+-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 55533322 111 1 11 122334444333333332211
Q ss_pred ------------cC---ChhHHHHHHHHHHhC---CCCCC---------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329 199 ------------MG---ILDKAYLVMVEMQKL---GVKPD---------VITYTTLISAFYKDNRPEIGNGLWNLMVCKG 251 (409)
Q Consensus 199 ------------~g---~~~~a~~~~~~m~~~---g~~~~---------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 251 (409)
.+ .+..|.+.+.+-... ....+ ..+...-...+.-.|+.-.+..-|+..+...
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 01 122222222221110 01111 1222222233455799999999999999875
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQT 331 (409)
Q Consensus 252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 331 (409)
.. +...|--+...|....+.++.+..|.+..+.+.. |+.+|..=...+.-.+++++|..=|++.+..... +...|-.
T Consensus 357 ~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQ 433 (606)
T KOG0547|consen 357 PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQ 433 (606)
T ss_pred cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHH
Confidence 33 2333767778899999999999999999887644 5666666666667778999999999999877433 5556666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
+-.+.-+.+.+++++..|++.+++ ++..++.|+.....+...++++.|.+.++..++..+.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 666667899999999999997764 6778899999999999999999999999999988776
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=4e-08 Score=89.09 Aligned_cols=244 Identities=14% Similarity=0.119 Sum_probs=178.5
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc----CCC-CcCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 015329 145 GCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK----FHI-QFDIFS-FNIVIKAFCEMGILDKAYLVMVEMQKL--- 215 (409)
Q Consensus 145 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~--- 215 (409)
+.+.-..+...+...|...|+++.|+.+++...+. .|. .|...+ .+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33344457777999999999999999998654332 231 233333 555778899999999999999999752
Q ss_pred --CCC-C-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----C-CCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 216 --GVK-P-DVITYTTLISAFYKDNRPEIGNGLWNLMVCK-----G-CFPNL-ATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 216 --g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
|-. | -..+++.|..+|.+.|++++|...++...+- | ..|.+ ..++.+...|+..+++++|..+++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 322 1 1345677777899999999988877765431 1 12232 3456677888999999999999987744
Q ss_pred c---CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--C-CCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329 285 F---GIEPD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RL--M-PNRKIYQTMIHYLCQEGDFNLAYIMCK 350 (409)
Q Consensus 285 ~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~ 350 (409)
. -+.++ ..+++.|...|...|++++|.++++..+.. +. . -....++.|...|.+.+.+.+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 2 11222 467899999999999999999999988654 11 2 224567888999999999999998887
Q ss_pred HHHh----CC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 351 DSMK----KN--WVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 351 ~m~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
+... .| .+-...+|..|...|...|+++.|.++.+.+.
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6543 22 23345789999999999999999999988765
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=3.9e-09 Score=90.06 Aligned_cols=253 Identities=11% Similarity=0.113 Sum_probs=131.7
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH
Q 015329 125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK 204 (409)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 204 (409)
+.-.|++..++.-.+ .....-..+......+.+++...|..+.+.. ++... -.|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~--~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS--SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT--SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC--CChhHHHHHHHHHHHhCccchHH
Confidence 334556666554444 2211112223334455566666666543332 22221 14444444444433333233444
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329 205 AYLVMVEMQKLGVKPDVITYT-TLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 205 a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 283 (409)
++.-+++....+...+..++. .....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444333322221222222 2223344556777776665432 245555666777777777777777777776
Q ss_pred HcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 015329 284 RFGIEPDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP 359 (409)
Q Consensus 284 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 359 (409)
+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +-
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 542 22 333344444432 23577777777776554 45567777777777777777887777777776654 44
Q ss_pred CHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhcCCCC
Q 015329 360 SVDTISALLEGLKKNNQP-CKANTIMALVQRRVPHF 394 (409)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 394 (409)
++.++..++.+....|+. +.+.+++.+++...|.+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 566777777777777766 55667777777766654
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=7.8e-08 Score=83.28 Aligned_cols=225 Identities=11% Similarity=0.000 Sum_probs=131.0
Q ss_pred CChHHHHHHHHHhhhcC-CCCC--HHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHH
Q 015329 129 GMIKHAMDTFYDMHLYG-CKRT--VKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKA 205 (409)
Q Consensus 129 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 205 (409)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|++..... +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34556666666665432 1221 3446666667777777777777776554431 22456777777888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 206 YLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 206 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
.+.|++..+.... +..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888887775433 45666777777777888888888888777653 33221222222334566778888877665432
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 015329 286 GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR---RL--MP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP 359 (409)
Q Consensus 286 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 359 (409)
. .|+...+ .+. ....|+...+ +.+..+.+. .. .| ....|..+...+.+.|++++|...|++.++.+ ++
T Consensus 195 ~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 195 L-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred C-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 2 2222111 222 2234554433 233333321 11 11 23467777778888888888888888877665 33
Q ss_pred CHHHH
Q 015329 360 SVDTI 364 (409)
Q Consensus 360 ~~~~~ 364 (409)
+..-+
T Consensus 269 ~~~e~ 273 (296)
T PRK11189 269 NFVEH 273 (296)
T ss_pred hHHHH
Confidence 44333
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.5e-07 Score=79.03 Aligned_cols=293 Identities=12% Similarity=0.027 Sum_probs=206.6
Q ss_pred CCCchhHHHHHHHhhh-CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 015329 93 ARRFDYIEHLLEHQKS-LPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA 171 (409)
Q Consensus 93 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 171 (409)
.++-..+.+.+-.+.. ...+.+.+....+...+...|+.++|+..|++....+ +-+........-.+...|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 3444444444433332 2234467888899999999999999999999987543 2233333334444556777766666
Q ss_pred HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329 172 FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG 251 (409)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 251 (409)
+...+.... .-+...|-.-.......+++..|+.+-++.++.... +...|-.-...+...|++++|.-.|+......
T Consensus 288 L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 288 LMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 554443321 123444555555666778899999999888876533 55566655677888999999999999887753
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCCCCH-HH
Q 015329 252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI-KGF-CRSGHLDMAKKVYSAMLGRRLMPNR-KI 328 (409)
Q Consensus 252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li-~~~-~~~g~~~~a~~~~~~m~~~~~~p~~-~~ 328 (409)
+-+...|.-++.+|...|++.+|...-+...+.- .-+..+.+.+. ..| .....-++|.++++.-.+. .|+. ..
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 4578999999999999999999887666654321 22445554441 222 2233457888988877655 5553 35
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.+.+...|...|....+..+++..+.. .||....+.|.+.+...+.+++|.+.|....+.+|.+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 667778888899999999999988775 79999999999999999999999999999999887764
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.3e-07 Score=83.93 Aligned_cols=285 Identities=11% Similarity=-0.039 Sum_probs=212.2
Q ss_pred ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329 79 NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK 158 (409)
Q Consensus 79 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 158 (409)
+......-.+-+-..+++.+..++.+.+....+ +....+..-|.++...|+..+-..+=.+|.+.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 333444455667778899999999998886643 355555555567888888887777777777653 445678988888
Q ss_pred HHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329 159 VLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP 237 (409)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 237 (409)
-|.-.|...+|.++|.... .+.|. ...|-.+...|.-.|..++|+..+...-+.=.. ...-+--+.--|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccH
Confidence 8888899999999995432 23333 457888999999999999999998887763111 111122344557889999
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCC--cCHHHHHHHHHHHHhcCCHHHHH
Q 015329 238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIE--PDEVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--p~~~~~~~li~~~~~~g~~~~a~ 311 (409)
+.|.+.|.+.... .+-|+...+-+.-.....+.+.+|..+|+..+.. +-+ .-..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999988875 3567788888877777888999999999887621 111 13456888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329 312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK 373 (409)
Q Consensus 312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 373 (409)
..++..+....+ |..++.++.-.|...|+++.|.+.|.+.+-. .|+-.+...++..++.
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 999998877444 8889999999999999999999999987754 6887777766655444
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.11 E-value=2.7e-06 Score=76.96 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 015329 294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV-DTISALLEGLK 372 (409)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~ 372 (409)
|...++.--..|-++....+|+++.+..+. ++.........+-...-++++++++++-+..--.|+. ..|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 333444444455566666666666655443 2222222222223344466666666654332112333 45666665544
Q ss_pred h---CCChHHHHHHHHHHHhcCCCC
Q 015329 373 K---NNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 373 ~---~g~~~~a~~~~~~~~~~~~~~ 394 (409)
+ ....+.|..+|++..+.-|+.
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPPE 583 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCHH
Confidence 4 235888888888888865543
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=2e-08 Score=85.81 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHH
Q 015329 272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF-NLAYIMCK 350 (409)
Q Consensus 272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~ 350 (409)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44455555554332 2234444444444455555555555555444433221 333344444444444444 33334444
Q ss_pred HHH
Q 015329 351 DSM 353 (409)
Q Consensus 351 ~m~ 353 (409)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 433
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.08 E-value=2.4e-06 Score=77.28 Aligned_cols=96 Identities=10% Similarity=0.135 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR-KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 372 (409)
+-.++..|-+.|+++.|..+++..+.+ .|+. ..|..=.+.+...|++++|..++++..+-+ .+|...-..-..-..
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 345567778888899998888888865 5554 345555677888889999988888877665 455554445556667
Q ss_pred hCCChHHHHHHHHHHHhcCC
Q 015329 373 KNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~ 392 (409)
+.++.++|.+++....+.+.
T Consensus 451 rAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HccccHHHHHHHHHhhhccc
Confidence 78888888888888777664
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=3.5e-06 Score=76.22 Aligned_cols=341 Identities=12% Similarity=0.053 Sum_probs=202.9
Q ss_pred CCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCC-----------
Q 015329 43 DKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQ----------- 111 (409)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------- 111 (409)
...+|...+.-+...+-|+-++.++++..+-. | ..-+-.|..++..+++++|.+.+........
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q 211 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ 211 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhcC---H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence 34567777777777788888888888886544 3 3366677778888888888777766442210
Q ss_pred ---------------------------------CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329 112 ---------------------------------GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK 158 (409)
Q Consensus 112 ---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 158 (409)
..-...|.+|...|.+.|.+++|.++|++.... ..+..-|..+.+
T Consensus 212 lw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd 289 (835)
T KOG2047|consen 212 LWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFD 289 (835)
T ss_pred HHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHH
Confidence 001224788999999999999999999987653 334444445555
Q ss_pred HHHcc----------------CCH------HHHHHHHHhcCccCC-----------------------------------
Q 015329 159 VLTES----------------RDL------KAIQAFLMEVPEKFH----------------------------------- 181 (409)
Q Consensus 159 ~~~~~----------------~~~------~~a~~~~~~~~~~~~----------------------------------- 181 (409)
+|+.- ++. +....-|+.++.+..
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~t 369 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHH
Confidence 44321 111 111112222111110
Q ss_pred -------CCcC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHH
Q 015329 182 -------IQFD------IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD---VITYTTLISAFYKDNRPEIGNGLWN 245 (409)
Q Consensus 182 -------~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~ 245 (409)
+.|. ...|..+.+.|-..|+++.|..+|++..+...+-- ..+|-....+=.+..+++.|+++.+
T Consensus 370 yteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 370 YTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1111 13366667777777888888888887776543211 2334444444555667777777666
Q ss_pred HHHhcC-----------CC------CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329 246 LMVCKG-----------CF------PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD 308 (409)
Q Consensus 246 ~m~~~~-----------~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (409)
...... .+ .+...|...++.--..|-++....+|+.+.+..+. ++.........+-.+.-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHH
Confidence 554221 11 13345555566666677788888888888776654 3333222333344556678
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhCCChHHHHH
Q 015329 309 MAKKVYSAMLGRRLMPNR-KIYQTMIHYLCQ---EGDFNLAYIMCKDSMKKNWVPSVDTISALL--EGLKKNNQPCKANT 382 (409)
Q Consensus 309 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~ 382 (409)
++.++|++-+..=.-|+. ..|+..+.-+.+ ....+.|..+|++.++ |.+|...-+-.|+ ..--+.|....|+.
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888876655223444 456766665543 3458899999999888 6565443222222 22334678888888
Q ss_pred HHHHHHhcCC
Q 015329 383 IMALVQRRVP 392 (409)
Q Consensus 383 ~~~~~~~~~~ 392 (409)
+++++.....
T Consensus 608 iyerat~~v~ 617 (835)
T KOG2047|consen 608 IYERATSAVK 617 (835)
T ss_pred HHHHHHhcCC
Confidence 8888665543
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=5.9e-07 Score=75.37 Aligned_cols=88 Identities=8% Similarity=-0.078 Sum_probs=65.2
Q ss_pred HHhhhhcCChHHHHHHHHHhhcCCCCCCcc-chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329 51 LVKLKAERDPEKLFQLFKANAHNRIVIENK-YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG 129 (409)
Q Consensus 51 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (409)
+..+...+|+..|..+++.....+ .... .+---+..++.+.|++++|...+..+... ..++...+..|.-++.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHH
Confidence 777888899999999999876554 1222 22233456777999999999999988764 3446667777887778888
Q ss_pred ChHHHHHHHHHh
Q 015329 130 MIKHAMDTFYDM 141 (409)
Q Consensus 130 ~~~~a~~~~~~m 141 (409)
.+.+|..+-.+.
T Consensus 106 ~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 106 QYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHhhC
Confidence 999988876554
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.7e-07 Score=76.16 Aligned_cols=289 Identities=12% Similarity=0.047 Sum_probs=208.1
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT 137 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (409)
++...|...+-.+.....++.|......+.+.+...|+.++|+..|++....++- +........-.+.+.|+.+....+
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHH
Confidence 4445555555555555546788888999999999999999999999998865332 111122223345678899988888
Q ss_pred HHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 015329 138 FYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV 217 (409)
Q Consensus 138 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 217 (409)
...+.... +-+...|-.-+.......+++.|..+-+...+-. +.+...|-.-...+...|+.+.|.-.|+.......
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 88876543 3344455555566667778888887775443221 22344555555778899999999999999887643
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH-HHHH-hcCCHhHHHHHHHHHHHcCCCcC-HHHH
Q 015329 218 KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI-QHLV-NKRRSWQANKLMGLMQRFGIEPD-EVTY 294 (409)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~p~-~~~~ 294 (409)
-+...|.-|+.+|...|+..+|..+-+...+. ++.+..+.+.+. ..+. .-..-++|.+++++-... +|+ ....
T Consensus 366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 37899999999999999999998777665543 233555554442 2222 223356888888887765 555 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 295 NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 295 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
+.+...+...|..+.++.++++.... .||....+.|.+.+...+.+.+|++.|...++.+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 67778889999999999999998865 7899999999999999999999999999888764
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=9.5e-07 Score=79.28 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=40.8
Q ss_pred HHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHH
Q 015329 156 ALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV-KPDV--ITYTTLISAFY 232 (409)
Q Consensus 156 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~ll~~~~ 232 (409)
+...+...|+++.|...+++..... +.+...+..+...+...|++++|..++++...... .++. ..|..+...+.
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3344445555555555554443321 11233444445555555555555555555444221 1111 12333444455
Q ss_pred HcCChhhHHHHHHHHH
Q 015329 233 KDNRPEIGNGLWNLMV 248 (409)
Q Consensus 233 ~~~~~~~a~~~~~~m~ 248 (409)
..|++++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 5555555555555543
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.3e-05 Score=71.87 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCC
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYS--------AMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK------NWV 358 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~ 358 (409)
..-.++......|+++.|.+++. .+.+.+..| .+...++..+.+.++-+.|..++.+.+.- +-.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 33445556677899999999988 444444444 44566667777777766666666655431 111
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329 359 PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK 408 (409)
Q Consensus 359 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k 408 (409)
.-..++.-+...-.+.|+-++|..+++++.+.+++ +..++..++.+|++
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYAR 504 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHh
Confidence 11223444445556789999999999999987754 45566777777764
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=9.6e-07 Score=72.39 Aligned_cols=291 Identities=11% Similarity=0.056 Sum_probs=199.1
Q ss_pred ChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHH-HHHHHH
Q 015329 47 EPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIM-RIMMLY 125 (409)
Q Consensus 47 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 125 (409)
+...+-.+.+..++..|++++..-.+.. +.+....+.+..+|.+..++..|-..++++....+. ..-|. --.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHH
Confidence 3456777888899999999999887776 337777888999999999999999999999876443 22232 235666
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH--HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329 126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK--VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD 203 (409)
Q Consensus 126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 203 (409)
-+.+.+..|+.+...|.+. +....-..-+. .....+++..+..++++.... .+..+.+...-...+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHH
Confidence 7889999999999988752 22211111111 234567778888888666432 24555555555667899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-------------CCH--------------
Q 015329 204 KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-------------PNL-------------- 256 (409)
Q Consensus 204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~-------------- 256 (409)
.|.+-|+...+-|.--....|+..+-. .+.|+++.|++...++.++|++ ||+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 999999999885433367888876654 4678999999999999988754 121
Q ss_pred -hhHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 257 -ATFNVRIQHLVNKRRSWQANKLMGLMQR-FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 257 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
..+|.-...+.+.|+++.|.+-+-.|-- ...+.|++|...+.-.-. .+++.+..+-+.-+.....- -..||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 2233333455677888888888877721 122446677655543222 34455555555555555443 4678888888
Q ss_pred HHHHcCCHhHHHHHHHH
Q 015329 335 YLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 335 ~~~~~g~~~~a~~~~~~ 351 (409)
.||+..-++.|-.++-+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 99998888888877765
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=3.8e-07 Score=81.26 Aligned_cols=237 Identities=16% Similarity=0.099 Sum_probs=153.7
Q ss_pred CcCCCCCCCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC
Q 015329 35 FPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR 114 (409)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (409)
+...+|..+.+-....=..+.+.|+..+|.-.|+...+.+ +.+..+|-.|.......++-..|+..+++..+..+. +
T Consensus 276 F~e~Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-N 352 (579)
T KOG1125|consen 276 FSEENPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-N 352 (579)
T ss_pred ecccCcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-c
Confidence 3444455555544444556778888999999999998887 567788888888888888888899999998877554 6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH-----------HHHHccCCHHHHHHHHHhcCccCCCC
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL-----------KVLTESRDLKAIQAFLMEVPEKFHIQ 183 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (409)
......|.-.|...|.-.+|++.|+..+....+ |..+. ..+.....+..+.++|-++....+..
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 777778888899999999999999888654311 00000 01111122244444444554444544
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-HhhHHHH
Q 015329 184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LATFNVR 262 (409)
Q Consensus 184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 262 (409)
+|......|.-.|--.|++++|.+.|+..+..... |...||-|.-.++...+.++|+..|++.++. +|+ +.+...|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence 55556666666666667777777777777665433 5666777777777666777777777766663 343 2333444
Q ss_pred HHHHHhcCCHhHHHHHHHHH
Q 015329 263 IQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 263 l~~~~~~~~~~~a~~~~~~~ 282 (409)
.-+|...|.+++|.+.|-..
T Consensus 505 gIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHH
Confidence 44566666666666665544
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.7e-06 Score=73.88 Aligned_cols=202 Identities=12% Similarity=0.017 Sum_probs=139.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC--C----HhhHHHH
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP--N----LATFNVR 262 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~----~~~~~~l 262 (409)
...+.++..+..+++.|++.+....+.. -+..-++....+|...|.+.++...-....+.|-.- + ...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4556777777888999999998888765 355566667777888888877766666555544211 0 1122223
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 015329 263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTY-------------------------NLVIKGFCRSGHLDMAKKVYSAM 317 (409)
Q Consensus 263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m 317 (409)
-.+|.+.++++.+...|.+.......|+...- ..-...+.+.|++..|+..|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44677778888999888887665444443221 11123356788999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 318 LGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 318 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
++.... |...|..-.-+|.+.|.+..|++=.+.-++.+ ++....|..=..++.-..+++.|.+.|.+..+.+|..
T Consensus 385 Ikr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 385 IKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 888633 77889999999999999999888777766653 4444555555566666778999999999888887443
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.3e-05 Score=74.12 Aligned_cols=345 Identities=12% Similarity=-0.008 Sum_probs=205.6
Q ss_pred CCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC-hhHHHHHHH
Q 015329 45 PLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR-EGFIMRIMM 123 (409)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 123 (409)
.++..+...+...|+++.+.+.|+.....- -.....|..+...+...|.-..|..+++........|+ ...+...-.
T Consensus 324 ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 324 AIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 344455556677788888888888775443 23445677777777888887888888887665443333 233322223
Q ss_pred HH-HhcCChHHHHHHHHHhhh--cCC--CCCHHhHHHHHHHHHcc----CC-------HHHHHHHHHhcCccCCCCcCHH
Q 015329 124 LY-GKAGMIKHAMDTFYDMHL--YGC--KRTVKSLNAALKVLTES----RD-------LKAIQAFLMEVPEKFHIQFDIF 187 (409)
Q Consensus 124 ~~-~~~~~~~~a~~~~~~m~~--~~~--~~~~~~~~~ll~~~~~~----~~-------~~~a~~~~~~~~~~~~~~~~~~ 187 (409)
.| -+.+..++++++-.+... .+. ......|..+.-+|... .. ..++.+.+++.....+..|++.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 33 345566666666555544 111 12223344444444321 11 1445555555545545555544
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CC--------------
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK-GC-------------- 252 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~-------------- 252 (409)
.|-. --|+..++++.|++..++..+.+..-+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 482 f~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 482 FYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 4433 346667788888888888888755567888887777777777777777666544321 10
Q ss_pred ----CCCHh-----------------------------------------------------------------------
Q 015329 253 ----FPNLA----------------------------------------------------------------------- 257 (409)
Q Consensus 253 ----~~~~~----------------------------------------------------------------------- 257 (409)
.--..
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 00001
Q ss_pred ------------hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015329 258 ------------TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN 325 (409)
Q Consensus 258 ------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 325 (409)
.|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|......+.. +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-H 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-C
Confidence 11222233333444444444444333321 113334444444555667777888777777665322 4
Q ss_pred HHHHHHHHHHHHHcCCHhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329 326 RKIYQTMIHYLCQEGDFNLAYI--MCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
+.+..++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|.+-|....+.....+.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 5567788888888888777777 888888877 678888888889999999999998888887766654443
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.1e-06 Score=72.08 Aligned_cols=293 Identities=13% Similarity=0.070 Sum_probs=203.5
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHH-HHHHH
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNA-ALKVL 160 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~ 160 (409)
-+...+..+++..++++|++++..-....+. +..-...|..+|-...++..|-+.|+++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3677788889999999999999887766443 5666777889999999999999999999764 465555543 34566
Q ss_pred HccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 015329 161 TESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI--KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE 238 (409)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 238 (409)
.+.+.+..|..+...|.+. ++...-..-+ ......+|+-.+..+++.....| +..+.+...-...+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 6778888888888555432 2222111112 22345688888888888876432 3444444444556899999
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-------------cCHH--------HHHHH
Q 015329 239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-------------PDEV--------TYNLV 297 (409)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~~--------~~~~l 297 (409)
.|.+-|+...+-+--.....|+..+..| +.|+.+.|++...++.+.|++ ||+. .-+.+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999998865455567788777665 568899999999999887754 2221 12333
Q ss_pred HHH-------HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 298 IKG-------FCRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE 369 (409)
Q Consensus 298 i~~-------~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 369 (409)
+.+ +.+.|+.+.|.+.+.+|.-+ .-..|+.|...+.-.=. .+++.+..+-+.-++..+ +-...||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 333 45789999999999888654 23456677655433222 344555555555555554 456789999999
Q ss_pred HHHhCCChHHHHHHHHHH
Q 015329 370 GLKKNNQPCKANTIMALV 387 (409)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~ 387 (409)
.|+++.-++.|-.++.+-
T Consensus 319 lyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHhhhHHHhHHHHHHhhC
Confidence 999999999998887653
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=1.9e-05 Score=80.17 Aligned_cols=310 Identities=9% Similarity=0.030 Sum_probs=190.8
Q ss_pred HHHHHHhcCCCchhHHHHHHHhhhCCCC------CC--hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC----HHh
Q 015329 85 DTVSRLAGARRFDYIEHLLEHQKSLPQG------RR--EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT----VKS 152 (409)
Q Consensus 85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~ 152 (409)
.....+...|+++++..++......-.. +. ......+...+...|++++|...+++..+.--..+ ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3445556778888888888776432111 01 11122233456678999999999988765311111 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcc---CCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC--C-CH
Q 015329 153 LNAALKVLTESRDLKAIQAFLMEVPEK---FHI-QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK----LGVK--P-DV 221 (409)
Q Consensus 153 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~--~-~~ 221 (409)
.+.+...+...|+++.+...+++.... .|- .....++..+...+...|+++.|...+++... .|.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455666677889998888877654322 111 11233456667778889999999988887654 2211 1 12
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HHHH--
Q 015329 222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKG--CFP--NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD-EVTY-- 294 (409)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~-- 294 (409)
..+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.++|...+........... ...+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455566777899999988888765421 111 233444456677788999999988888754211111 1111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCC-HHH
Q 015329 295 ---NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN---RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWVPS-VDT 363 (409)
Q Consensus 295 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~ 363 (409)
...+..+...|+.+.|...+........... ...+..+..++...|++++|...+++.... |...+ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 1122445567889999888776554321111 111345667788899999999999887653 32222 245
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 364 ISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
...+..++.+.|+.++|.+.+.+..+...+.
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 6666788999999999999999987766444
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.84 E-value=6.5e-05 Score=68.37 Aligned_cols=329 Identities=10% Similarity=0.066 Sum_probs=191.8
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM 135 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (409)
.-|+-++|.+......+.+ .-+.+.|+.+.-.+....++++|++.|......+.. +..++.-+.-.-++.|+++...
T Consensus 53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHH
Confidence 4467777777777776655 345666777666666677777777777777766443 5566665555556667777777
Q ss_pred HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHH------HHhcCChhHHHHHH
Q 015329 136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKA------FCEMGILDKAYLVM 209 (409)
Q Consensus 136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~------~~~~g~~~~a~~~~ 209 (409)
+....+.+.. +-....|..+..++.-.|+...|..+.++........|+...+.-.... ..+.|.++.|.+.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777666542 2233456666677777777777777776664443334555554443332 33456666666655
Q ss_pred HHHHhCCCCCCHHHH-HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcCCHhHHH-HHHHHHHHcC
Q 015329 210 VEMQKLGVKPDVITY-TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV-NKRRSWQAN-KLMGLMQRFG 286 (409)
Q Consensus 210 ~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~ 286 (409)
..-... ..|-..+ ..-...+.+.+++++|..++..+... .||..-|...+..+. +-.+..++. .+|....+.-
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 544332 1132222 33445677888889999999888887 366666655554443 333344444 6666664421
Q ss_pred C---CcCH----------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-----------
Q 015329 287 I---EPDE----------------------------VTYNLVIKGFCRSGHLDMAKKVYSAMLGR--RL----------- 322 (409)
Q Consensus 287 ~---~p~~----------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----------- 322 (409)
. .|-. .++..+...|-.....+-..++.-.+... |-
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 0 0100 01111111111111111111111111111 11
Q ss_pred -CCCHHHHH--HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 323 -MPNRKIYQ--TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVD-TISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 323 -~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
.|+...|+ .+++.+-+.|+++.|..+++..+.. .|+.. .|..=.+.+...|+.++|..++++..+.+.++
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 45555554 4677788899999999999987765 56543 44455588889999999999999988776443
No 91
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=5.4e-09 Score=57.15 Aligned_cols=30 Identities=43% Similarity=0.908 Sum_probs=12.1
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015329 287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSA 316 (409)
Q Consensus 287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (409)
+.||..||+.||.+|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444433
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=3.3e-06 Score=77.50 Aligned_cols=231 Identities=11% Similarity=0.053 Sum_probs=168.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc
Q 015329 120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM 199 (409)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 199 (409)
.+...+...|-..+|..+|+++. .|..++.+|...|+..+|..+..+..++ +||...|..+.+.....
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccCh
Confidence 46677888899999999998875 4777888889999888888887666554 67888888777776666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329 200 GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLM 279 (409)
Q Consensus 200 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 279 (409)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-..-.+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677777777654321 11222222334688888888888776653 456677888888888889999999988
Q ss_pred HHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-C
Q 015329 280 GLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-W 357 (409)
Q Consensus 280 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~ 357 (409)
..-... .| +...||.+-.+|.+.|+..+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++.... .
T Consensus 543 ~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 887765 44 46689999999999999999999999988886 3356677777777888999999999888876532 1
Q ss_pred CCCHHHHHHHHHHHHh
Q 015329 358 VPSVDTISALLEGLKK 373 (409)
Q Consensus 358 ~~~~~~~~~l~~~~~~ 373 (409)
..|......++....+
T Consensus 620 ~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTVLE 635 (777)
T ss_pred cccchhhHHHHHHHHh
Confidence 2255555555544433
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=8.3e-06 Score=80.08 Aligned_cols=249 Identities=9% Similarity=0.032 Sum_probs=179.3
Q ss_pred HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHHHH
Q 015329 133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYLVM 209 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~ 209 (409)
.|.++-+..... +-+...|-..|....+.++.++|..+.++.....++.-. ...|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 444444444331 334567888888888888888888888776655433222 335667777666777788888999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329 210 VEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP 289 (409)
Q Consensus 210 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 289 (409)
+++.+.. -....|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.=.+-
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 9988752 23556788888999999999999999999875 33577888889999999999899999998887752221
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHH
Q 015329 290 -DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV--DTISA 366 (409)
Q Consensus 290 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ 366 (409)
........+..-.+.|+.+.+..+|+.......+ -...|+..|+.-.++|+.+.+..+|++.+..++.|-. ..|..
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 2233444555566889999999999988876433 4567999999999999999999999999988877654 45677
Q ss_pred HHHHHHhCCChHHHHHHHHHH
Q 015329 367 LLEGLKKNNQPCKANTIMALV 387 (409)
Q Consensus 367 l~~~~~~~g~~~~a~~~~~~~ 387 (409)
.+..--..|+-+.++.+=.++
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHH
Confidence 776666667755554443333
No 94
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=9.6e-09 Score=56.15 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 321 RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 321 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=2.1e-06 Score=72.08 Aligned_cols=189 Identities=12% Similarity=0.012 Sum_probs=128.9
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHh---h
Q 015329 184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-P-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLA---T 258 (409)
Q Consensus 184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~ 258 (409)
.....+..+...+...|+++.|...|+++...... | ...++..+..++.+.|++++|...++.+.+.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 35667788888899999999999999998875322 1 12466777888999999999999999998753 11221 3
Q ss_pred HHHHHHHHHhc--------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015329 259 FNVRIQHLVNK--------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQ 330 (409)
Q Consensus 259 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 330 (409)
+..+..++... |+.++|.+.++.+.+.... +...+..+..... .... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence 44455555544 6788888888888776322 2222222211100 0000 00 0112
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 331 TMIHYLCQEGDFNLAYIMCKDSMKKN--WVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
.+...+.+.|++.+|...+++.++.. -+.....+..+..++.+.|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45567889999999999999988762 123457888999999999999999999998887765
No 96
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=1.5e-05 Score=69.18 Aligned_cols=144 Identities=13% Similarity=0.020 Sum_probs=80.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC-CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh
Q 015329 120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR-DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE 198 (409)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 198 (409)
.+-..+...++.++|+.+.+++++.. +-+..+|+..-.++...| +++++..+++++.... +-+..+|+.....+.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHH
Confidence 34444556667777777777777653 233345555555555555 3466666665554431 1233445544444445
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 199 MGIL--DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 199 ~g~~--~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
.|+. ++++.+++++.+...+ +..+|+...-.+...|+++++++.++++++.+ ..|...|+.....+.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR 188 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence 5542 4566666666665444 56666666666666666666776666666654 3344555554444433
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=5.6e-05 Score=63.60 Aligned_cols=307 Identities=11% Similarity=0.044 Sum_probs=133.8
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCcc-chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHH---HHHHHHhcC
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENK-YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR---IMMLYGKAG 129 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~ 129 (409)
+...++...|+.-|..+.+.+ |+. .++-.-...|...|+-..|+.=+.......+ +++.+ -...+.+.|
T Consensus 48 lla~~Q~sDALt~yHaAve~d---p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp----DF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEGD---PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP----DFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc----cHHHHHHHhchhhhhcc
Confidence 445566666666666665444 222 2222233455566666666666666654422 22221 123456667
Q ss_pred ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 015329 130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVM 209 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 209 (409)
.++.|..=|+..++.. |+..+- ..++.+.-..+ ........+..+...|+...|+...
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~-----------------e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQ-----------------EHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHH-----------------HHHHHHHHHHHHhcCCchhhHHHHH
Confidence 7777777777666543 211110 00000000000 0001111223334445555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329 210 VEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP 289 (409)
Q Consensus 210 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 289 (409)
..+++..+ -|...|..-..+|...|++..|+.=++...+.. ..++.++--+-..+...|+.+.++...++-++. .|
T Consensus 179 ~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp 254 (504)
T KOG0624|consen 179 THLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP 254 (504)
T ss_pred HHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc
Confidence 55554322 244444444455555555555554444443332 223333334444444555555555544444433 22
Q ss_pred CHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 290 DEVT----YNLV---------IKGFCRSGHLDMAKKVYSAMLGRRLMPNR---KIYQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 290 ~~~~----~~~l---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
|... |..| +......+++-++.+-.+...+....... ..+..+-.++...|++.+|++...+.+
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 2211 1000 01112334444444444444443211111 122233334444555556655555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 354 KKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
+.. +.|..++.--..+|.-...++.|+.=++...+.++.+
T Consensus 335 ~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 335 DID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 432 2234455555555555555555555555555554433
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.75 E-value=4.5e-06 Score=67.41 Aligned_cols=119 Identities=8% Similarity=0.023 Sum_probs=66.9
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCC--HHHH
Q 015329 234 DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG-FCRSGH--LDMA 310 (409)
Q Consensus 234 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~a 310 (409)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444455555555555443 445566666666666666666666666666555422 44555555554 244454 3666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 311 KKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 311 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
.+++++..+.+.. +...+..+...+...|++++|...|+++++.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666655433 4455555566666666666666666666554
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=1.4e-05 Score=77.51 Aligned_cols=170 Identities=6% Similarity=0.061 Sum_probs=114.1
Q ss_pred CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329 78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL 157 (409)
Q Consensus 78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 157 (409)
.+...+..|+..+...+++++|.++.+......+. ...+|-.+...+.+.++.+.+.-+ .+ +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL---------------I 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh---------------h
Confidence 34466888889988999999999999977665444 334444344477777776666555 22 2
Q ss_pred HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329 158 KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP 237 (409)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 237 (409)
.......++..+..+...+..- .-+...+..+..+|-+.|+.+++..+|+++.+.... |..+.|.+...|... +.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 2233333443344444333221 124457778888888999999999999999887744 788888888888888 88
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
++|++++.+.... +...+++.++.++|.++...
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888888777654 45555666666666666654
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=5.3e-05 Score=77.01 Aligned_cols=302 Identities=11% Similarity=0.016 Sum_probs=185.5
Q ss_pred HHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--C----CCCH--HhHHHHHHHH
Q 015329 89 RLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG--C----KRTV--KSLNAALKVL 160 (409)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~--~~~~~ll~~~ 160 (409)
.+...|+++.+..+++.+.......+..........+...|+++++...+....+.- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777777665321111123333345556678899999999998875421 0 1111 1222233455
Q ss_pred HccCCHHHHHHHHHhcCccCCCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHH
Q 015329 161 TESRDLKAIQAFLMEVPEKFHIQF---DIFSFNIVIKAFCEMGILDKAYLVMVEMQKL----GVK-PDVITYTTLISAFY 232 (409)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~ 232 (409)
...|+++.+...+++......... .....+.+...+...|+++.|...+.+.... |.. ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678999999988876543211111 1234566677788899999999999888742 111 11234455667788
Q ss_pred HcCChhhHHHHHHHHHhc----CCC--C-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCc--CHHHHHHHHHHH
Q 015329 233 KDNRPEIGNGLWNLMVCK----GCF--P-NLATFNVRIQHLVNKRRSWQANKLMGLMQRFG--IEP--DEVTYNLVIKGF 301 (409)
Q Consensus 233 ~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~li~~~ 301 (409)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876542 211 1 22334455566777899999999998875431 112 233455566678
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCCCHH--HH--HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 015329 302 CRSGHLDMAKKVYSAMLGR--RLMPNRK--IY--QTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS---VDTISALLEGLK 372 (409)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~--~~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~ 372 (409)
...|+.++|.+.++..... ....... .. ...+..+...|+.+.|.+++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999999887543 1111111 10 1122444568999999998876544221111 112345668889
Q ss_pred hCCChHHHHHHHHHHHhc
Q 015329 373 KNNQPCKANTIMALVQRR 390 (409)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~ 390 (409)
..|+.++|...+++....
T Consensus 703 ~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 703 LLGQFDEAEIILEELNEN 720 (903)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 101
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.73 E-value=7.6e-05 Score=69.32 Aligned_cols=206 Identities=12% Similarity=0.098 Sum_probs=140.9
Q ss_pred CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCCHHhHH
Q 015329 76 VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG-CKRTVKSLN 154 (409)
Q Consensus 76 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~ 154 (409)
+..|...|..+.-++.+.|+++.+.+.|++....-.. ....|..+...|...|.-..|+.+++.-.... -++++..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5568888999999999999999999999998755333 56778889999999999999999998865432 123344444
Q ss_pred HHHHHHHcc-CCHHHHHHHHHhcCccCCC---CcCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCCC-C
Q 015329 155 AALKVLTES-RDLKAIQAFLMEVPEKFHI---QFDIFSFNIVIKAFCEMG-----------ILDKAYLVMVEMQKLGV-K 218 (409)
Q Consensus 155 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~m~~~g~-~ 218 (409)
..-..|.+. +..+++..+-.......+- ......|..+.-+|...- ...++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444445443 4445555554433221111 112344555554554321 24577888888887554 3
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 219 PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
|+...|-.+ -|+..++.+.|.+..++..+.+-.-+...|..+...+...+++.+|+++.+...+
T Consensus 478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 444333333 3567889999999999999986677889999998888888999988888876543
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=7.9e-06 Score=75.12 Aligned_cols=240 Identities=9% Similarity=-0.034 Sum_probs=186.4
Q ss_pred CCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHH
Q 015329 77 IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAA 156 (409)
Q Consensus 77 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 156 (409)
+|--..-..+...+...|-...|..+++.+ ..|..+|.+|...|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 333344556778888899999999999876 35677899999999999999999998873 7899999999
Q ss_pred HHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329 157 LKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR 236 (409)
Q Consensus 157 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 236 (409)
.+......-+++|..+.+....+ .-..+.....+.+++.++.+.|+.-.+.+. .-..+|-.+.-+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhh
Confidence 99887777779999998665433 222233334457899999999998887543 256788888888889999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015329 237 PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSA 316 (409)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (409)
+..|.+.|..-.... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999887752 4467899999999999999999999999999887 33666777777788899999999999998
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHH
Q 015329 317 MLGRR-LMPNRKIYQTMIHYLCQ 338 (409)
Q Consensus 317 m~~~~-~~p~~~~~~~li~~~~~ 338 (409)
+.... ..-|..+...++....+
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHh
Confidence 87651 12255555555555443
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.72 E-value=6.4e-06 Score=66.51 Aligned_cols=124 Identities=14% Similarity=0.065 Sum_probs=67.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HhHH
Q 015329 269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL-CQEGD--FNLA 345 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a 345 (409)
.++.+++...++...+.+. .|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4444555555555544432 25555566666666666666666666665555322 444555555542 44444 3566
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 346 YIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 346 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.+++++.++.+ +-+...+..+...+.+.|++++|+..|+++.+..++.+
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 66666655553 33455555555666666666666666666665555543
No 104
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=1.9e-05 Score=68.54 Aligned_cols=213 Identities=11% Similarity=-0.005 Sum_probs=123.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 153 LNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMG-ILDKAYLVMVEMQKLGVKPDVITYTTLISA 230 (409)
Q Consensus 153 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 230 (409)
+..+-..+...+..+.|.....+.... .|+ ..+|+.--..+...| ++++++..++++.+...+ +..+|+.....
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 344444455556667777777655443 333 334555555555566 467777777777766544 55556655444
Q ss_pred HHHcCCh--hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---C
Q 015329 231 FYKDNRP--EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS---G 305 (409)
Q Consensus 231 ~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g 305 (409)
+.+.|+. ++++.+++.+.+.. +-|..+|+...-++...|+++++++.++++.+.++. |...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 4555542 55666776666653 446667777777777777777777777777766544 555555555444443 2
Q ss_pred CH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329 306 HL----DMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE----GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK 373 (409)
Q Consensus 306 ~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 373 (409)
.. ++..++..+++..... |...|+.+...+... +...+|.+.+.+..+.+ ..+...+..|+..|..
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 3455555555554332 555666666666552 33455666666655543 3455566666666664
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.3e-05 Score=64.92 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=79.6
Q ss_pred HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----
Q 015329 228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR---- 303 (409)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 303 (409)
...|++.|++++|++...... +......=+..+.+..+.+-|...+++|.+-. +..|.+-|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344555666666665554411 22222222334445555666666666665431 34455555555433
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHH
Q 015329 304 SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCK-ANT 382 (409)
Q Consensus 304 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~ 382 (409)
.+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+.+. .-++.+...++.+-...|...+ ..+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 23455666666666542 34566666666666666666666666666666554 3445555555544444444333 334
Q ss_pred HHHHHHhcCCC
Q 015329 383 IMALVQRRVPH 393 (409)
Q Consensus 383 ~~~~~~~~~~~ 393 (409)
.+.+++...|.
T Consensus 264 ~l~QLk~~~p~ 274 (299)
T KOG3081|consen 264 NLSQLKLSHPE 274 (299)
T ss_pred HHHHHHhcCCc
Confidence 45555544443
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=7.7e-05 Score=71.30 Aligned_cols=300 Identities=13% Similarity=0.121 Sum_probs=179.5
Q ss_pred hHHHHhhhhcCChHHHHHHHHHhhcCC-CCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329 48 PPALVKLKAERDPEKLFQLFKANAHNR-IVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG 126 (409)
Q Consensus 48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (409)
...+.++...+-|.+-+++++.+.-.+ .+..+...-+.+|-...+..+ .++.+..+.+..-.. + .+...+.
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyDa---~----~ia~iai 1059 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYDA---P----DIAEIAI 1059 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCCc---h----hHHHHHh
Confidence 345667788888899999999885443 233444455666665555543 445555555442211 1 2445566
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 015329 127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY 206 (409)
Q Consensus 127 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 206 (409)
.++-+++|..+|++.. .+....+.|+.- .+..+.|..+-+..- ....|..+.++-.+.|.+.+|+
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHH
Confidence 7778888888888763 344444444442 345566666553221 3457788888888888888887
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 015329 207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFG 286 (409)
Q Consensus 207 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 286 (409)
+-|-+. -|+..|..+++...+.|.+++-.+.+...++..-.|... +.+|-+|++.++..+..+++.
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc------
Confidence 766553 266778888888888888888888877777665555444 467778888877766555432
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329 287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR--------------------RLMPNRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~ 346 (409)
.||......+.+-|...|.++.|.-+|.....- .-..+..+|..+-.+|...+.+.-|
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA- 1268 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA- 1268 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-
Confidence 344444444555555555555554444321100 0011344555555555444443322
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 347 IMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
+|...++.....-..-++..|-..|-+++.+.+++.....
T Consensus 1269 ----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1269 ----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred ----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 2333334455666777888888888888888887765433
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=7e-06 Score=68.91 Aligned_cols=189 Identities=10% Similarity=0.027 Sum_probs=130.6
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HH
Q 015329 147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV--IT 223 (409)
Q Consensus 147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~ 223 (409)
......+..+...+...|+++.|...+++......-.|. ...+..+..++.+.|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445667888888999999999999999887655332222 246778889999999999999999999986433222 24
Q ss_pred HHHHHHHHHHc--------CChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHH
Q 015329 224 YTTLISAFYKD--------NRPEIGNGLWNLMVCKGCFPNL-ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTY 294 (409)
Q Consensus 224 ~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 294 (409)
+..+..++.+. |++++|.+.++.+.+. .|+. ..+..+... .. ... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH--------HHH
Confidence 55555556554 7788999999999876 3433 232222111 11 000 000 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 295 NLVIKGFCRSGHLDMAKKVYSAMLGRRL--MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 295 ~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
..+...|.+.|++++|...++...+... ......+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678899999999999999887622 123567889999999999999999998886654
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=9.4e-05 Score=60.09 Aligned_cols=251 Identities=11% Similarity=0.023 Sum_probs=162.2
Q ss_pred HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329 88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK 167 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 167 (409)
+.+.-.|.+..++..-......+. ....-..+.++|...|.+.....-. +... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~~--~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSKT--DVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccccc--hhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhH
Confidence 555556888877776665554432 2333334677888888766544332 2221 333344443333333344443
Q ss_pred HHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 015329 168 AIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLM 247 (409)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 247 (409)
....-+.+.........+......-...|+..|++++|++...... +......=+..+.+..+.+.|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222333333333343334444567999999999999887722 3333333445567788999999999999
Q ss_pred HhcCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015329 248 VCKGCFPNLATFNVRIQHLVN----KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM 323 (409)
Q Consensus 248 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 323 (409)
.+-. +..|.+.+..++.+ .+.+.+|.-+|++|.++- .|+..+.+....++...|++++|..++++.......
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 9854 66777767776665 567889999999998742 678999999999999999999999999999988544
Q ss_pred CCHHHHHHHHHHHHHcCCHhHH-HHHHHHHHhC
Q 015329 324 PNRKIYQTMIHYLCQEGDFNLA-YIMCKDSMKK 355 (409)
Q Consensus 324 p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~ 355 (409)
++.+...+|.+-...|...++ .+.+..+...
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 677777777666666665444 4555555443
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=2.9e-05 Score=76.45 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=149.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCC---CCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCH-HH
Q 015329 114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLY-GCK---RTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDI-FS 188 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ 188 (409)
+...|-..|......++++.|.+++++.+.. +++ --...|.++++.-...|.-+...++|++..+-. |+ ..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC----DAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----chHHH
Confidence 4556666777777777777777777776532 111 112456677776666777777777776553321 33 34
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC--CHhhHHHHHHHH
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP--NLATFNVRIQHL 266 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~ 266 (409)
|..|...|.+.+.+++|.++|+.|.+.-- -....|...+..+.+.++-+.|..++.+..+. ++- ......-.++.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHH
Confidence 77777888888888888888888876422 36677888888888888878888888777664 111 344445555666
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHhH
Q 015329 267 VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR--KIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 344 (409)
.+.|+.+.+..+|+.......+ -...|+..++.-.+.|+.+.+..+|++....++.|-- ..|...+..=-..|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6778888888888887766433 5567888888888888888888888888877766533 345555554445565443
No 110
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=0.00015 Score=61.39 Aligned_cols=161 Identities=11% Similarity=0.078 Sum_probs=95.9
Q ss_pred HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329 87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL 166 (409)
Q Consensus 87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 166 (409)
+.-+....++.-|+.+++--...+......+-.-+..++.+.|++++|...|.-+.+.. .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44455667888888888876644433222333346778889999999999999987755 56666666666666666777
Q ss_pred HHHHHHHHhcCcc-------------CCC-----------CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 015329 167 KAIQAFLMEVPEK-------------FHI-----------QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVI 222 (409)
Q Consensus 167 ~~a~~~~~~~~~~-------------~~~-----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 222 (409)
.+|..+-....+. .+- .-+..---.+.......-.+++|+++|.+.... .|.-.
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 6666655322110 000 000011111222222233567888888887765 24445
Q ss_pred HHHHHH-HHHHHcCChhhHHHHHHHHHhc
Q 015329 223 TYTTLI-SAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 223 ~~~~ll-~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
..|.-+ -+|.+..-++-+.+++.-..+.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 555444 3456667777777887777665
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.00038 Score=62.30 Aligned_cols=148 Identities=10% Similarity=0.072 Sum_probs=113.6
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 015329 256 LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR-KIYQTMI 333 (409)
Q Consensus 256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li 333 (409)
.-+|...|..-.+...++.|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|+--.+. -+|. .--...+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHH
Confidence 3457777788888888999999999999988777 7788888888776 47889999999876554 2233 3345677
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC---CchhHHHHHHhh
Q 015329 334 HYLCQEGDFNLAYIMCKDSMKKNWVPSV--DTISALLEGLKKNNQPCKANTIMALVQRRVPHF---SSNQLSAFKSIL 406 (409)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 406 (409)
+-+...++-..+..+|++.+..++.++. ..|..++.--..-|+...+.++-++.....+.. .......+++.|
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 7788889999999999999888666554 689999999999999999999998887766622 224444555544
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=5.6e-05 Score=73.41 Aligned_cols=232 Identities=13% Similarity=0.085 Sum_probs=145.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHH-hHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHH
Q 015329 114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVK-SLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIV 192 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 192 (409)
....+..|+..|...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------hh
Confidence 4667788999999999999999999977665 44443 333333355555553332222 34
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329 193 IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS 272 (409)
Q Consensus 193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 272 (409)
+.......++.-+..+...|...+ -+...+-.+..+|-+.|+.+++..+|+++.+.. +-|+...|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 444444555544455555555543 245577888999999999999999999999987 67888999999999999 99
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329 273 WQANKLMGLMQRFGIEPDEVTYNLVIKGF-----CRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~ 346 (409)
++|..++.+....-+ +..-|+.+...+ ....+.+.-.++.+.+... |..--..++-.+...|-..++++++.
T Consensus 166 ~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 166 EKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 999999988765411 111112111111 1122333333444444333 33333444455556666677777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 347 IMCKDSMKKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 347 ~~~~~m~~~~~~~~~~~~~~l~~~~~ 372 (409)
.+++..++.. +-|.....-++.+|.
T Consensus 244 ~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 7777777654 345555566666554
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.2e-05 Score=72.05 Aligned_cols=255 Identities=10% Similarity=-0.023 Sum_probs=180.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhc
Q 015329 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEM 199 (409)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ 199 (409)
...-+.+.|++.+|.-.|+.....+ +-+...|..|.......++-..++.-+++..+ +.| +....-.|.-.|...
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhh
Confidence 3445678899999999999987765 55778999999999998888777776655433 244 466677788888888
Q ss_pred CChhHHHHHHHHHHhCCC------C--CCHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcCCCCCHhhHHHHHHHHHhcC
Q 015329 200 GILDKAYLVMVEMQKLGV------K--PDVITYTTLISAFYKDNRPEIGNGLWNLMV-CKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 200 g~~~~a~~~~~~m~~~g~------~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
|.-..|...|+......+ . ++...-.. ..+..........++|-++. ..+..+|+.....|--.|.-.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 988899998888754321 0 01110000 12222223334445555544 4454577788888888888899
Q ss_pred CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHH
Q 015329 271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR-KIYQTMIHYLCQEGDFNLAYIMC 349 (409)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~ 349 (409)
++++|.+.|+..+..... |..+||-|-..++...+.++|+..|.+.++. +|+. .+.-.|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999887433 7889999999999999999999999999877 4443 23444666788999999999888
Q ss_pred HHHHh---C------CCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329 350 KDSMK---K------NWVPSVDTISALLEGLKKNNQPCKANTIM 384 (409)
Q Consensus 350 ~~m~~---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 384 (409)
-+.+. + +-.++...|..|-.++.-.++.|.+.++.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 66543 2 11234578888888888888888666554
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.59 E-value=0.00068 Score=64.32 Aligned_cols=189 Identities=12% Similarity=0.037 Sum_probs=96.0
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHH--HhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSR--LAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
..+++..|+.......+.. |+.. |..++.+ +.+.|+.++|..+++.....+.. +..+...+-.+|.+.++.++
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4456666666666665554 3322 2222222 24556666666666555544333 55555555566666666666
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH----HHHHHHHH-----------------------------------
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL----KAIQAFLM----------------------------------- 174 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~----------------------------------- 174 (409)
|..+|++.... .|+..-...+..+|++.+.+ ..+.+++.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 66666665543 35555555555566655555 33333332
Q ss_pred -----hcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 015329 175 -----EVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMV-EMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMV 248 (409)
Q Consensus 175 -----~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 248 (409)
.+.++.|.--+..-.......+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 222222210011112222233344556666666662 22222222233444455666677777777777777777
Q ss_pred hcC
Q 015329 249 CKG 251 (409)
Q Consensus 249 ~~~ 251 (409)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 765
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=3.7e-05 Score=62.34 Aligned_cols=123 Identities=13% Similarity=-0.018 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
.+..++...+.|++..|...|.+..... .+|..+|+.+.-+|.+.|+.++|..-|.+..+.- .-+...++.+...|.-
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L 180 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHH
Confidence 3334444444444444444444444332 2244444444444444444444444444444431 2233334444444444
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015329 269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVY 314 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 314 (409)
.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 181 ~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 44444444444444433322 3333333444444444444444443
No 116
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00055 Score=61.96 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHH--------HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMG--------LMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR--RLMPNR 326 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~ 326 (409)
...-.+++.....|+++.|.+++. .+.+.+..|. +...++..+.+.++.+.|..+++..... .-.+..
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 344556677778999999999999 6666665554 4456677777777777777777665432 111122
Q ss_pred HH----HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329 327 KI----YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALV 387 (409)
Q Consensus 327 ~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 387 (409)
.. +..+...-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-+.+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 22 3333334457799999999999999865 78999999999999886 677777765543
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=1.8e-05 Score=64.10 Aligned_cols=165 Identities=8% Similarity=-0.086 Sum_probs=127.7
Q ss_pred ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329 79 NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK 158 (409)
Q Consensus 79 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 158 (409)
|... ..+-..+...|+-+....+........ +.+.......+....+.|++..|+..|++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 556677788888888888777755332 3356677778888999999999999999987765 778889999999
Q ss_pred HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 015329 159 VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE 238 (409)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 238 (409)
+|.+.|+++.|..-|.+..+-.+- +....|.+.-.|.-.|+++.|..++......+.. |..+-..+.......|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 999999999988888766444322 4556788888888889999999999988877654 6777777888888899999
Q ss_pred hHHHHHHHHHh
Q 015329 239 IGNGLWNLMVC 249 (409)
Q Consensus 239 ~a~~~~~~m~~ 249 (409)
+|..+...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99887765544
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=4.2e-06 Score=63.90 Aligned_cols=97 Identities=8% Similarity=-0.046 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 375 (409)
.+...+...|++++|...|+........ +...|..+..++...|++++|...|+...+.+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3445555566666666666665544322 45555555666666666666666666655543 445555556666666666
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q 015329 376 QPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~ 394 (409)
+.++|++.++...+..|+.
T Consensus 107 ~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 6666666666666555544
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.53 E-value=0.00039 Score=58.71 Aligned_cols=267 Identities=11% Similarity=-0.012 Sum_probs=144.6
Q ss_pred CCCChHHHHh---hhhcCChHHHHHHHHHhhcCCCCCCccchH-HHHHHHHhcCCCchhHHHHHHHhhhCCCCCC--hhH
Q 015329 44 KPLEPPALVK---LKAERDPEKLFQLFKANAHNRIVIENKYAF-EDTVSRLAGARRFDYIEHLLEHQKSLPQGRR--EGF 117 (409)
Q Consensus 44 ~~~~~~~l~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 117 (409)
+..|..+.++ +...|+...|+.-|....+.. ||-..- ..-...+.+.|.+++|..=|+.+....+... ...
T Consensus 69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 3344444443 334566666777777666554 554321 2234567899999999999999987755322 111
Q ss_pred H------------HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC
Q 015329 118 I------------MRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD 185 (409)
Q Consensus 118 ~------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (409)
+ ...+..+.-.|+...|++....+++.. +-|...|..-..+|...|++..|..=++... +.. .-+
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs-~Dn 222 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLS-QDN 222 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcc-ccc
Confidence 1 123445566788888888888887653 4566677777788888888877766553331 111 124
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH----H---------HHHHHHcCChhhHHHHHHHHHhcCC
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT----L---------ISAFYKDNRPEIGNGLWNLMVCKGC 252 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----l---------l~~~~~~~~~~~a~~~~~~m~~~~~ 252 (409)
..++--+-..+...|+.+.++...++.++. .||...+-. | +......++|.++++..+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 555556667777888888888888777764 344332211 1 0111223334444444443333321
Q ss_pred CCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 253 FPNL---ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 253 ~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
.... ..+..+-.++...+++.+|+..-.+.++. .| |+.++.--..+|.-..+++.|+.-|+...+.
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 1111 12223333444445555555555554443 22 2444444444555445555555555554443
No 120
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00023 Score=63.51 Aligned_cols=336 Identities=13% Similarity=0.063 Sum_probs=221.2
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
+...|+++.|+..|...+... ++|...|..-..+++..|++++|.+=-.+..+..+. =..-|.....++.-.|++++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHHH
Confidence 456799999999999999887 568888999999999999999998877776665432 25667788888899999999
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHH------hcCccC--CCCcCHHHHHHHHHHHHhc------
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLM------EVPEKF--HIQFDIFSFNIVIKAFCEM------ 199 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~--~~~~~~~~~~~ll~~~~~~------ 199 (409)
|+.-|.+-++.. +-+...++-+..++... . .+.+.|. .+.... ........|..++..+-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999987764 44555677777777211 1 1111110 000000 0000111233333322211
Q ss_pred ----CChhHHHHHHHH-----HHhCC-------CCC------------C----------HHHHHHHHHHHHHcCChhhHH
Q 015329 200 ----GILDKAYLVMVE-----MQKLG-------VKP------------D----------VITYTTLISAFYKDNRPEIGN 241 (409)
Q Consensus 200 ----g~~~~a~~~~~~-----m~~~g-------~~~------------~----------~~~~~~ll~~~~~~~~~~~a~ 241 (409)
.++..+.-++.. +...| ..| | ..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 011111111110 00011 111 0 112456777778888899999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH-------HHHHhcCCHHHHHHHH
Q 015329 242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI-------KGFCRSGHLDMAKKVY 314 (409)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li-------~~~~~~g~~~~a~~~~ 314 (409)
+-+....+.. -+..-++..-.+|...|.+.++...-....+.|.. ...-|+.+. .+|.+.++++.+...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9998888764 46666677778899999888887777776666543 333333333 3566677888999988
Q ss_pred HHHHhCCCCCCHHHHH-------------------------HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 315 SAMLGRRLMPNRKIYQ-------------------------TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE 369 (409)
Q Consensus 315 ~~m~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 369 (409)
.+.......|+...-. .-...+.+.|++..|...|.++++.. +-|...|..-.-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 8876654444332211 11345678899999999999999987 778889999999
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCCchhHH
Q 015329 370 GLKKNNQPCKANTIMALVQRRVPHFSSNQLS 400 (409)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (409)
+|.+.|.+..|.+=.+...+.+|++....++
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999999999888888888777655443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=0.00013 Score=70.02 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH
Q 015329 218 KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV 297 (409)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 297 (409)
..+...+-.|.....+.|.+++|+.+|+...+.. +-+......+...+.+.+++++|...+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3468888889999999999999999999998863 445667778888999999999999999999888543 66777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 298 IKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL 368 (409)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 368 (409)
..++.+.|++++|..+|++....+.. +..++..+..++-..|+.++|...|+...+.. .+....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 88899999999999999999985322 47788889999999999999999999987753 45555555544
No 122
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00082 Score=64.69 Aligned_cols=303 Identities=11% Similarity=0.116 Sum_probs=170.1
Q ss_pred CCCCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCC---------
Q 015329 40 PLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLP--------- 110 (409)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------- 110 (409)
++....-+..++..-+-.-++.++.++.+++...+ .|+ +...+...+-+++|..+|+......
T Consensus 1016 ~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD--a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~ 1087 (1666)
T KOG0985|consen 1016 VFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD--APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN 1087 (1666)
T ss_pred ccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC--chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34444444455544444457788888888876555 222 3334445555666666665532110
Q ss_pred ------------CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCc
Q 015329 111 ------------QGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPE 178 (409)
Q Consensus 111 ------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 178 (409)
.-..+.+|..+..+-.+.|.+.+|++-|-+. -|+..|..+++...+.|.+++..+++ .|.+
T Consensus 1088 i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL-~MaR 1160 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL-LMAR 1160 (1666)
T ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH-HHHH
Confidence 0112445555555555555555555555333 23344555666666666666666655 4434
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhh
Q 015329 179 KFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLAT 258 (409)
Q Consensus 179 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 258 (409)
+..-.|.+. ..|+-+|++.+++.+.++++. -|+......+.+-|...|.++.|.-+|. ++.-
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN 1222 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSN 1222 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------Hhhh
Confidence 433333332 245555666655555443321 2455555555555555565555555544 2334
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ 338 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 338 (409)
|..+...+...|++..|.+.-++. -+..||..+-.+|...+.+.-| .|....+.....-...++.-|-.
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHh
Confidence 556666666677777766655443 2567777777777766555433 33333444566678889999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 339 EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
.|-+++...+++..+... +.....|+-|.-.|.+- ++++..+-++..-
T Consensus 1292 rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred cCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 999999999888654321 23344666666666654 5666666665544
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00021 Score=63.17 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=132.5
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329 184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI 263 (409)
Q Consensus 184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 263 (409)
|+...+...+.+......-..+..++.+..+. .-...-|..-+. +...|++++|+..++.+... .+-|...+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 44555555555444443333333333333331 112333444433 45689999999999998876 355667777788
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
..+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|..++++....... |+..|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence 8999999999999999999887 455 555667788999999999999999998876433 888999999999999998
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 343 NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 343 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.++.....+ +|...|+++.|+..+....+....
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccC
Confidence 888876654 456678888888888888776643
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=4e-05 Score=58.52 Aligned_cols=93 Identities=10% Similarity=-0.147 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG 340 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 340 (409)
.....+...|++++|...|+........ +...|..+..++...|++++|...|+........ +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 3444555566666666666665554322 4555555555666666666666666666554322 4555555555666666
Q ss_pred CHhHHHHHHHHHHhC
Q 015329 341 DFNLAYIMCKDSMKK 355 (409)
Q Consensus 341 ~~~~a~~~~~~m~~~ 355 (409)
+.++|...|+..++.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666655554
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.00024 Score=67.21 Aligned_cols=223 Identities=11% Similarity=0.045 Sum_probs=112.7
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH--HccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329 126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL--TESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD 203 (409)
Q Consensus 126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 203 (409)
...+++..|.+-..++.+. .|+.. |..++.++ .+.|..++|..+++.. ...+.. |..|...+-..|...|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEAL-YGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhh-ccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 4566777777777776654 34432 33344443 4556666666666443 222222 6666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC----------Hh
Q 015329 204 KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR----------SW 273 (409)
Q Consensus 204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~ 273 (409)
+|..+|++.... .|+..-...+..+|.+.+.+.+-.++--+|-+. .+-+...|=++++.+...-. ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 777777777654 355555666666676666665433333333321 23344444444444443211 11
Q ss_pred HHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 274 QANKLMGLMQRFG-IEPDEVTYNLVIKGFCRSGHLDMAKKVYS-AMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 274 ~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
-|.+.++.+.+.+ ---+..-...-.......|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 2334444443332 11111111222233345566666666663 222222222333344455555666666666666666
Q ss_pred HHhCC
Q 015329 352 SMKKN 356 (409)
Q Consensus 352 m~~~~ 356 (409)
+..+|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 66554
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=1.2e-05 Score=60.91 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG 370 (409)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 370 (409)
......+...+...|++++|.+.++.+...+. .+...+..+...+...|++++|..+++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 34455566666777777777777777766532 255666777777777777777777777766654 4556666667777
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329 371 LKKNNQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
+...|++++|.+.++...+..|....
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccch
Confidence 77777777777777777777665543
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00041 Score=56.07 Aligned_cols=188 Identities=13% Similarity=0.092 Sum_probs=131.5
Q ss_pred cCCHHHHHHHHHhcCccC--C-CCcCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 015329 163 SRDLKAIQAFLMEVPEKF--H-IQFDIFS-FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE 238 (409)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~--~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 238 (409)
..+.+++.+++.++.... | ..++..+ |.-+.-+....|+.+.|..+++.+...-.. +..+-..-..-+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 455688888877664432 2 4455544 666667778889999999999998875321 2222211122234478899
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
+|+++++.+.+.+ +.|..++---+...-..|+..+|++-+.+..+.-+ .|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998876 56777777777777778888888888888777643 488899999999999999999999999988
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhC
Q 015329 319 GRRLMP-NRKIYQTMIHYLCQEG---DFNLAYIMCKDSMKK 355 (409)
Q Consensus 319 ~~~~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 355 (409)
-. .| +...+..+...+...| ++..+.++|.+.++.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 65 34 4444556666554443 456677888877765
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=0.00026 Score=66.43 Aligned_cols=229 Identities=11% Similarity=0.065 Sum_probs=147.1
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCC--------CCChhHHHHHHHHHH
Q 015329 55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQ--------GRREGFIMRIMMLYG 126 (409)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~ 126 (409)
...|+-+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|..... ......-....-...
T Consensus 739 vtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 35678888877777664 345799999999999999988877776653210 001122222334456
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 015329 127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY 206 (409)
Q Consensus 127 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 206 (409)
..|.+++|+.+|++-+. |..|=..|-..|.+++|.++- +-.++..+ ..||......+-..+|.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiA-E~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIA-ETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHH-hhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 78999999999988764 444556677889999999887 43333222 346666677777788899998
Q ss_pred HHHHHHHh----------CCC---------CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329 207 LVMVEMQK----------LGV---------KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV 267 (409)
Q Consensus 207 ~~~~~m~~----------~g~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (409)
+.|++... ..+ ..|...|.....-+-..|+.+.|+.+|...+. |-+++...|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 88875321 110 11223333333333345555555555554433 445566666
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 268 NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
-.|+.++|-.+-++ .-|....-.|.+.|-+.|++.+|..+|.+..
T Consensus 950 ~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 67777777766554 2255666678888999999999998887754
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00017 Score=58.22 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=117.4
Q ss_pred hcCChHHHHHHHHHhhcCCC---CCCccc-hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329 56 AERDPEKLFQLFKANAHNRI---VIENKY-AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~---~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (409)
..+++++.++++..+..... ..++.. .|..++-+....|+.+.|...++.+...-++ +..+-.-=.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence 34688888888888764421 234443 3667777888888888888888887755422 333322122234457888
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVE 211 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 211 (409)
++|+++|+.+.+.+ +.|..++-.=+...-..|..-.|.+-+.+..+. +..|...|.-+...|...|++++|.-.+++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 88888888888776 555566655555555555554444444444444 345777888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH---cCChhhHHHHHHHHHhc
Q 015329 212 MQKLGVKPDVITYTTLISAFYK---DNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 212 m~~~g~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~ 250 (409)
+.-..+. +...|..+.+.+.- ..+.+.+.+.|.+..+.
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7765322 33334444443333 23445566666666654
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=0.00032 Score=67.47 Aligned_cols=236 Identities=13% Similarity=0.063 Sum_probs=161.7
Q ss_pred ChhHHHHHHHHHHhcCChHHH-HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHH
Q 015329 114 REGFIMRIMMLYGKAGMIKHA-MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIV 192 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 192 (409)
.+....-+=.+.+.-|.-++| .+++.+..+ ++..........++..-......+ +..+...+..|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L 92 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLV 92 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHH
Confidence 344444444556667776666 344444432 333333333332222222122222 34468889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329 193 IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS 272 (409)
Q Consensus 193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 272 (409)
.....+.|.+++|..+++...+.... +......+...+.+.+++++|+...++..... +-+......+..++.+.|++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999999987433 56677788899999999999999999999874 45667778888899999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
++|..+|+++...+. -+..++..+..++-..|+.++|...|+...+.. .+....|+..+. ++..-..+++++
T Consensus 171 ~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~ 242 (694)
T PRK15179 171 EQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHc
Confidence 999999999998543 257888899999999999999999999998762 334455655443 334445555555
Q ss_pred HhC----CCCCCHHHHHHHHHHHHh
Q 015329 353 MKK----NWVPSVDTISALLEGLKK 373 (409)
Q Consensus 353 ~~~----~~~~~~~~~~~l~~~~~~ 373 (409)
.-. |....+......+.-|.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 243 GVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred CcccccCCCceeeeeHHHHHHHHhh
Confidence 333 333344455555554544
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.0015 Score=57.96 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=61.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHhH
Q 015329 196 FCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LATFNVRIQHLVNKRRSWQ 274 (409)
Q Consensus 196 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 274 (409)
+...|++++|+..++.+...-.. |...+....+.+.+.++.++|.+.++.+... .|+ ....-.+-.+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 33455556666666665554221 3444444445555666666666666655554 233 3344444555556666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329 275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYS 315 (409)
Q Consensus 275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (409)
|+.+++....... -|...|..|..+|...|+..++.....
T Consensus 393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 6666655554432 255556666666666665555554433
No 132
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.31 E-value=0.00082 Score=62.54 Aligned_cols=190 Identities=13% Similarity=0.117 Sum_probs=115.6
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
+...|+.+.|+.-|-+.. .....+.+..+...+.+|+.+++.++.... ...+|..+...|+..|+++.
T Consensus 716 l~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 445567777766665542 233456677777888888888887765432 45667777788888888888
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ 213 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 213 (409)
|.++|.+.- .++-.|..|.+.|.++.|.++-.+.+ |...+...|-+-..-+-+.|++.+|.++|-...
T Consensus 784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 888886542 35567778888888888887765543 223345556666666667777777777664432
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329 214 KLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLM 279 (409)
Q Consensus 214 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 279 (409)
.|+ ..|.+|-+.|..++.+++...-.... -..|...+..-|-..|+...|..-|
T Consensus 852 ----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 852 ----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 233 24566666676666666655432211 1123333444444455555555444
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=7.4e-05 Score=56.56 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=6.5
Q ss_pred HHHhcCCHHHHHHHHHH
Q 015329 300 GFCRSGHLDMAKKVYSA 316 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~ 316 (409)
.|...|++++|...|+.
T Consensus 94 ~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 94 CLLALGEPESALKALDL 110 (135)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33333333333333333
No 134
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.27 E-value=0.00027 Score=65.60 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ 274 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 274 (409)
+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|+++|-+. ..++-.|..|.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 34445556666666665554322 2334555556666666666666665432 123445556666666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015329 275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVY 314 (409)
Q Consensus 275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 314 (409)
|.++-.+.. |.+.....|-.-..-.-+.|++.+|.++|
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 665544332 22223333333333333444444444433
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.9e-06 Score=47.76 Aligned_cols=33 Identities=30% Similarity=0.710 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD 220 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 220 (409)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=8e-05 Score=66.13 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=52.9
Q ss_pred HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 015329 228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHL 307 (409)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (409)
+..+...++++.|..+++++.+.. |+. ...+...+...++-.+|.+++++..+... -+...+..-...+.+.+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCH
Confidence 333344455555555555555442 222 22344444444455555555555443321 1333444444444455555
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329 308 DMAKKVYSAMLGRRLMP-NRKIYQTMIHYLCQEGDFNLAYIMCK 350 (409)
Q Consensus 308 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 350 (409)
+.|+++.+++.+. .| +..+|..|..+|...|+++.|+..++
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5555555555443 22 22345555555555555555554444
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=1.8e-06 Score=47.47 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKP 219 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 219 (409)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 138
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.25 E-value=2.2e-05 Score=69.92 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=88.4
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHH
Q 015329 183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL--GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFN 260 (409)
Q Consensus 183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 260 (409)
+.+......+++.+....+++.+..++-+.... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345556667777777777777788877777754 222334455678888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS 304 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 304 (409)
.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777666666666666666666555
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2.1e-06 Score=47.54 Aligned_cols=31 Identities=35% Similarity=0.417 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEP 289 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 289 (409)
|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3344444444444444444444444444333
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=0.00015 Score=55.64 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR--KIYQTM 332 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l 332 (409)
..|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+........|+. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 3677777777777776653221 1223333456677778888888888888776522222 233445
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329 333 IHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALV 387 (409)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 387 (409)
...+...|++++|+..++..... ......+....+.|.+.|++++|+..|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777788888888887653332 233445566668888888888888877754
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.22 E-value=2.5e-05 Score=69.62 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH
Q 015329 215 LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG--CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV 292 (409)
Q Consensus 215 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 292 (409)
.+...+......+++.+....+.+.+..++....... ...-..|.+++++.|.+.|..+.++.+++.=...|+-||.+
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445577788888888888888888888888877652 22334556788888888888888888888888888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE 339 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 339 (409)
++|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999998888888888776666777777777766655
No 142
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.22 E-value=0.003 Score=54.93 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=91.8
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 256 LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHY 335 (409)
Q Consensus 256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 335 (409)
..+.+..|.-+...|+...|.++-++.. -|+..-|..-+.+++..++|++-.++-.. + -.+.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHH
Confidence 3456667778888999988888877765 57899999999999999999988876542 1 134668999999
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH---------HHHHHhcCCCCCchhH
Q 015329 336 LCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTI---------MALVQRRVPHFSSNQL 399 (409)
Q Consensus 336 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---------~~~~~~~~~~~~~~~~ 399 (409)
|.+.|+..+|..++.. + + +..-+..|++.|++.+|.+. +..+.+..+++.....
T Consensus 247 ~~~~~~~~eA~~yI~k-----~-~----~~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~~~~~ 309 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-----I-P----DEERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNNDQLI 309 (319)
T ss_pred HHHCCCHHHHHHHHHh-----C-C----hHHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCChHHH
Confidence 9999999999988776 1 1 24456778899998888665 3445555555544433
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=0.00026 Score=66.51 Aligned_cols=240 Identities=11% Similarity=0.066 Sum_probs=161.2
Q ss_pred CccchHHHHH--HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-C--------C
Q 015329 78 ENKYAFEDTV--SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY-G--------C 146 (409)
Q Consensus 78 ~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~--------~ 146 (409)
.|..|-..++ +.|..-|+.+.|.+-.+-++ +..+|..+.+.|.+.++.+-|.-.+..|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4555666665 45778899999988777765 6789999999999999999998888777431 1 1
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT 226 (409)
Q Consensus 147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 226 (409)
.++ .+=....-...+.|-.++|..+|++- + -|..|=+.|-..|.|++|.++-+.--+..++ .||..
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~c-k---------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~ 863 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQC-K---------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYN 863 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHH-H---------HHHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHH
Confidence 121 22222333345678889999998543 2 2445566788899999999987654443333 34444
Q ss_pred HHHHHHHcCChhhHHHHHHHH----------HhcC---------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 015329 227 LISAFYKDNRPEIGNGLWNLM----------VCKG---------CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI 287 (409)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~m----------~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 287 (409)
...-+-..++.+.|++.|++- .... -..|...|.-..+..-..|+.+.|+.+|+...+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 444445567777777766542 1111 123455555566666678888888888877652
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 288 EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
|-.+++..|-.|+.++|-++-++-- |....-.+.+.|-..|++.+|..+|.+.
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4567777788899999988876532 5555666778888888888888877654
No 144
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.18 E-value=3.7e-05 Score=53.77 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=16.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGV-KPDVITYTTLISAFY 232 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~ 232 (409)
.+...+++.....+|+.+.+.|+ .|+..+|+.++.+.+
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 33333444444444444444444 444444444444433
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.17 E-value=3.9e-05 Score=53.64 Aligned_cols=79 Identities=15% Similarity=0.323 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcC--------CHhHHHHHHHHHHHcCCCcCHHHHH
Q 015329 225 TTLISAFYKDNRPEIGNGLWNLMVCKGC-FPNLATFNVRIQHLVNKR--------RSWQANKLMGLMQRFGIEPDEVTYN 295 (409)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~ 295 (409)
...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455556666888888888888888888 788888888888777642 3456778888888888888888888
Q ss_pred HHHHHHHh
Q 015329 296 LVIKGFCR 303 (409)
Q Consensus 296 ~li~~~~~ 303 (409)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 146
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.15 E-value=0.00039 Score=66.67 Aligned_cols=183 Identities=9% Similarity=0.005 Sum_probs=104.7
Q ss_pred ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 015329 59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF 138 (409)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (409)
+...|+..|-+..+.+ .-=...|..|...|....+..+|.+.|+........ +......+...|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4555555555555444 111234666666666666666777777776655332 4445556667777777777777763
Q ss_pred HHhhhcC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 015329 139 YDMHLYG-CKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV 217 (409)
Q Consensus 139 ~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 217 (409)
-..-+.. ...-...|....-.|.+.++...+...|+...+- -+.|...|..++.+|.+.|++..|.++|.+....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 3322211 0011122333333455666666666666443322 1335667888888888888888888888877764
Q ss_pred CCCHHHHHHHH--HHHHHcCChhhHHHHHHHHHh
Q 015329 218 KPDVITYTTLI--SAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 218 ~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~ 249 (409)
.|+ .+|.... -.-+..|.+.+++..+.....
T Consensus 626 rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222 2333222 223557888888888877764
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=0.00029 Score=62.64 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
.....+++.+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++..... +.+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 335556677777889999999999999864 44 34457788888888899999999988653 45666777777788
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 267 VNKRRSWQANKLMGLMQRFGIEPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
.+.++.+.|+.+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.-.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8999999999999999887 454 558999999999999999999999877654
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00035 Score=53.51 Aligned_cols=115 Identities=8% Similarity=-0.011 Sum_probs=54.0
Q ss_pred cCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCCHH
Q 015329 234 DNRPEIGNGLWNLMVCKGCFPN---LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE--VTYNLVIKGFCRSGHLD 308 (409)
Q Consensus 234 ~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~ 308 (409)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .....|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555432 111 111222334455556666666666655554422211 12233445555556666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 309 MAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 309 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
+|+..++...... .....+....+.|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666654432221 2233444455555666666666665554
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.11 E-value=0.0066 Score=54.75 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG 370 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 370 (409)
.+|...+..-.+..-++.|..+|.+..+.+..+ ++.++++++.-|| .++..-|.++|+--+++ +.-++.-....+.-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 356667777778888999999999999987777 7777888888766 67888999999876654 23455556677788
Q ss_pred HHhCCChHHHHHHHHHHHhcCCC--CCchhHHHHHH
Q 015329 371 LKKNNQPCKANTIMALVQRRVPH--FSSNQLSAFKS 404 (409)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 404 (409)
+...|+-..+..+|+++.....+ -+..++..+++
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 88889999999999998877333 34455555554
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=0.00013 Score=50.92 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 375 (409)
.+...+...|++++|...++...+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 3444455555666666666555544211 22444555555555566666666665555443 233345555555666666
Q ss_pred ChHHHHHHHHHHHhcC
Q 015329 376 QPCKANTIMALVQRRV 391 (409)
Q Consensus 376 ~~~~a~~~~~~~~~~~ 391 (409)
+.+.|...+....+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 6666666665555443
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=0.00018 Score=53.00 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM--PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN--WVPSVDTISALL 368 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~ 368 (409)
++..+...+.+.|++++|.+.|..+...... .....+..+..++.+.|++++|...|+.+.... .......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555666667777777777776654211 113345556666777777777777777666532 111244566666
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 369 EGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
.++.+.|+.++|.+.++++.+..|+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 67777777777777777777766554
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0032 Score=52.72 Aligned_cols=182 Identities=11% Similarity=0.118 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITY---TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
.+-.....+...|++++|.+.|+.+...-... .... -.+..++.+.+++++|...+++..+..-.....-|...+.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 33334555677889999999999888754332 2222 3455777888899999999988887532222233333333
Q ss_pred HHHh--cC---------------CH---hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015329 265 HLVN--KR---------------RS---WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP 324 (409)
Q Consensus 265 ~~~~--~~---------------~~---~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 324 (409)
+.+. .+ |. .+|+.. +..++.-|-...-..+|...+..+...
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~---- 173 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR---- 173 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH----
Confidence 3331 11 11 122233 334444444444455665555554432
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK--NWVPSVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
-...--.+..-|.+.|.+..|..-++.+++. +.+........+..+|.+.|..++|.++...+..
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1111225566788899999999999998875 3445566778888999999999999988776643
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.0011 Score=57.12 Aligned_cols=199 Identities=12% Similarity=0.080 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC--CC-C--CHHHHHHHHHHHHHcCChhhHHHHHHHHHh----cCCCCC--Hh
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLG--VK-P--DVITYTTLISAFYKDNRPEIGNGLWNLMVC----KGCFPN--LA 257 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~ 257 (409)
|.-....|...|++++|.+.|.+..+.. .. + -...|......|. ..++++|...+++..+ .| .++ ..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHHHHH
Confidence 4445556666677777766666554211 01 0 1122333333333 3366666666665442 22 121 23
Q ss_pred hHHHHHHHHHhc-CCHhHHHHHHHHHHH----cCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCC
Q 015329 258 TFNVRIQHLVNK-RRSWQANKLMGLMQR----FGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL-----MPN 325 (409)
Q Consensus 258 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~----~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~ 325 (409)
.+..+...|... |++++|.+.|++..+ .| .+ -...+..+...+.+.|++++|.++|++...... ..+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 445555566666 788888888877643 22 11 133456667777888888888888887766522 122
Q ss_pred HH-HHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 326 RK-IYQTMIHYLCQEGDFNLAYIMCKDSMKK--NWVPS--VDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 326 ~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
.. .|...+-++...|++..|.+.+++.... ++..+ ......|+.+| +.|+.+...+.+.+..+..
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccC
Confidence 22 2233344556678888888888877654 33333 34556666666 5566666666665554443
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.97 E-value=0.00038 Score=59.71 Aligned_cols=133 Identities=10% Similarity=0.079 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG-FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL 336 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 336 (409)
+|-.++....+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344455555555555555555555543321 122222222222 11133444455555555443 222444455555555
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 337 CQEGDFNLAYIMCKDSMKKNWVPSV---DTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
...|+.+.|..+|++.+.. +.++. ..|..++..-.+.|+.+.+.++.+++.+..+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5555555555555554443 11111 25555555555555555555555555554433
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.3e-05 Score=42.91 Aligned_cols=29 Identities=34% Similarity=0.740 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLG 216 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 216 (409)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56667777777777777777777776655
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.92 E-value=1.5e-05 Score=42.58 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=6.7
Q ss_pred HHHHHHhcCCHhHHHHHHH
Q 015329 262 RIQHLVNKRRSWQANKLMG 280 (409)
Q Consensus 262 ll~~~~~~~~~~~a~~~~~ 280 (409)
+|++|++.|++++|.++|+
T Consensus 6 li~~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFD 24 (31)
T ss_pred HHHHHHccchHHHHHHHHH
Confidence 3333333333333333333
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=2.6e-05 Score=53.40 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 015329 304 SGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT 382 (409)
Q Consensus 304 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 382 (409)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ ..+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666655221 1333344456666666666666666655 2211 1122333444566666666666666
Q ss_pred HHHH
Q 015329 383 IMAL 386 (409)
Q Consensus 383 ~~~~ 386 (409)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00086 Score=49.24 Aligned_cols=98 Identities=10% Similarity=0.007 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIE--PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM--PNRKIYQTMI 333 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li 333 (409)
++......+.+.|++++|.+.|..+.+.... .....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666677777777777776654211 11234555666677777777777777776654211 1234556666
Q ss_pred HHHHHcCCHhHHHHHHHHHHhC
Q 015329 334 HYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6667777777777777776665
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.89 E-value=0.00041 Score=48.27 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 015329 190 NIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK 269 (409)
Q Consensus 190 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (409)
..+...+...|++++|..++++..+.... +...+..+...+...+++++|...++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444555555666666666555543221 23444445555555555555555555554432 22333444455555555
Q ss_pred CCHhHHHHHHHHHH
Q 015329 270 RRSWQANKLMGLMQ 283 (409)
Q Consensus 270 ~~~~~a~~~~~~~~ 283 (409)
|+.+.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555443
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.87 E-value=0.00045 Score=54.82 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHH-----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc----------------CCHhHHHHH
Q 015329 220 DVITYTTLISAFYK-----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK----------------RRSWQANKL 278 (409)
Q Consensus 220 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 278 (409)
|..+|..+++.|.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55555555555543 355555666666666666666666666666655431 123345555
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 015329 279 MGLMQRFGIEPDEVTYNLVIKGFCRSG 305 (409)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (409)
+++|...|+-||..|+..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 555555555555555555555554443
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.83 E-value=0.00024 Score=56.29 Aligned_cols=88 Identities=23% Similarity=0.357 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------------cCChhhHHHH
Q 015329 185 DIFSFNIVIKAFCEM-----GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK----------------DNRPEIGNGL 243 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~ 243 (409)
|..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 566666666666543 5566666677777777777777777777776643 1233678999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329 244 WNLMVCKGCFPNLATFNVRIQHLVNKRRS 272 (409)
Q Consensus 244 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 272 (409)
+++|...|+.||..++..+++.+.+.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999877654
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.0017 Score=51.41 Aligned_cols=88 Identities=9% Similarity=-0.003 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
..+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+....... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 4455566666667777777777777665433222 345666666667777777777777766654221 3444555555
Q ss_pred HHHHcCCHhHH
Q 015329 335 YLCQEGDFNLA 345 (409)
Q Consensus 335 ~~~~~g~~~~a 345 (409)
.+...|+...+
T Consensus 115 ~~~~~g~~~~a 125 (172)
T PRK02603 115 IYHKRGEKAEE 125 (172)
T ss_pred HHHHcCChHhH
Confidence 56555554433
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.0032 Score=49.80 Aligned_cols=88 Identities=9% Similarity=-0.024 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI 263 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 263 (409)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566666667777777777777777765432221 3455666666666677777766666666542 22344444445
Q ss_pred HHHHhcCCHhH
Q 015329 264 QHLVNKRRSWQ 274 (409)
Q Consensus 264 ~~~~~~~~~~~ 274 (409)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555443
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00084 Score=59.83 Aligned_cols=102 Identities=10% Similarity=-0.012 Sum_probs=80.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
...+...|++++|+..|+++.+.... +...|..+..+|.+.|++++|+..++..+..... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 45566789999999999999887543 6778888888999999999999999999877432 667788888899999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 343 NLAYIMCKDSMKKNWVPSVDTISALL 368 (409)
Q Consensus 343 ~~a~~~~~~m~~~~~~~~~~~~~~l~ 368 (409)
++|...|++.++.+ |+......++
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 99999999888763 4444443333
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.0006 Score=58.53 Aligned_cols=132 Identities=10% Similarity=0.020 Sum_probs=79.7
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH-HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMML-YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL 160 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 160 (409)
+|..++...-+.+..+.|.++|....+.+ ..+..+|...... |...++.+.|.++|+...+. ...+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666777777777777777777776432 2345555544444 33355666677777776554 345556677777777
Q ss_pred HccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015329 161 TESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKL 215 (409)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 215 (409)
...++.+.+..+|++......... ....|...++.=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777766654422222 2346777777777777777777777766653
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.0017 Score=49.22 Aligned_cols=92 Identities=10% Similarity=-0.030 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG 340 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 340 (409)
.+-.-+...|++++|.++|+-+...... +..-|-.|..++...|++++|+..|......++. |+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 3334444556666666666665554322 3444455555555566666666666665555432 4555555556666666
Q ss_pred CHhHHHHHHHHHHh
Q 015329 341 DFNLAYIMCKDSMK 354 (409)
Q Consensus 341 ~~~~a~~~~~~m~~ 354 (409)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555443
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=0.00011 Score=50.35 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=43.7
Q ss_pred cCCHhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 015329 269 KRRSWQANKLMGLMQRFGIE-PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYI 347 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 347 (409)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666655331 2333344466666677777777776666 222111 22333344666666777777776
Q ss_pred HHHH
Q 015329 348 MCKD 351 (409)
Q Consensus 348 ~~~~ 351 (409)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.74 E-value=0.0078 Score=58.23 Aligned_cols=164 Identities=13% Similarity=0.051 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCCCHhhHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG-CFPNLATFNVRIQ 264 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~ 264 (409)
...|..|...|+...+...|.+.|++..+.... +...+..+.+.|+...+++.|..+.-...+.. ...-...|...--
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 446788888888877888888888888776533 66777788888888888888888732222211 0001122223444
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCH
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHY--LCQEGDF 342 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~ 342 (409)
.|.+.++..+++.-|+......++ |...|..+..+|...|.+..|.++|.+.... .|+. +|...-.+ -+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 566777788888888877766543 7778888888888888888888888777654 3332 23332222 3456777
Q ss_pred hHHHHHHHHHHh
Q 015329 343 NLAYIMCKDSMK 354 (409)
Q Consensus 343 ~~a~~~~~~m~~ 354 (409)
.+|...+...+.
T Consensus 647 keald~l~~ii~ 658 (1238)
T KOG1127|consen 647 KEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.70 E-value=0.029 Score=48.88 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 015329 223 TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFC 302 (409)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (409)
+.+..|.-+...|+...|.++-.+. -.|+...|...+.+++..++|++...+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4455566677888888888776665 258999999999999999999987776433 124477888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 015329 303 RSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN 374 (409)
Q Consensus 303 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 374 (409)
+.|+..+|..+...+ . +..-+..|.+.|++.+|.+...+ .-|...+..+...+...
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~------~kd~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK------EKDIDLLKQILKRCPGN 304 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH------cCCHHHHHHHHHHCCCC
Confidence 999999999988762 1 35567888999999999876543 23555665555544333
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.00024 Score=45.74 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=42.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 333 IHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
...+...|++++|.+.|++.++.. +-+...+..+..++...|++++|...++++.+..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455667777777777777777664 4456667777777777777777777777777776653
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.0018 Score=50.98 Aligned_cols=64 Identities=16% Similarity=0.014 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
..|..+...+...|++++|...|+........+ ...++..+...|...|+.++|...++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444455555555555555554432221 1234455555555555555555555555443
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0028 Score=48.06 Aligned_cols=94 Identities=9% Similarity=-0.004 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 375 (409)
.+..-+...|++++|..+|+.+...... +..-|-.|.-++-..|++.+|+..|......+ +-|+..+..+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 4445567899999999999998877544 56667788888889999999999999998877 578899999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 015329 376 QPCKANTIMALVQRRV 391 (409)
Q Consensus 376 ~~~~a~~~~~~~~~~~ 391 (409)
+.+.|++.|+......
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887655
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.0026 Score=56.69 Aligned_cols=87 Identities=9% Similarity=-0.064 Sum_probs=38.5
Q ss_pred HHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329 160 LTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI 239 (409)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 239 (409)
+...|+++.|...|++..... +-+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 334444444444444433221 112334444444444555555555555544443221 33344444444444555555
Q ss_pred HHHHHHHHHh
Q 015329 240 GNGLWNLMVC 249 (409)
Q Consensus 240 a~~~~~~m~~ 249 (409)
|...|+...+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 174
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=0.00035 Score=45.62 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhcCC
Q 015329 325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN-QPCKANTIMALVQRRVP 392 (409)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 392 (409)
+..+|..+...+...|++++|+..|++.++.+ +.+...|..+..++.+.| ++++|++.+++..+.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45567777777777788888888777777764 445667777777777777 67788877777776654
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.011 Score=55.35 Aligned_cols=140 Identities=13% Similarity=-0.003 Sum_probs=88.8
Q ss_pred CCCCHhhHHHHHHHHHhcC-----CHhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 015329 252 CFPNLATFNVRIQHLVNKR-----RSWQANKLMGLMQRFGIEPD-EVTYNLVIKGFCRS--------GHLDMAKKVYSAM 317 (409)
Q Consensus 252 ~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~a~~~~~~m 317 (409)
.+.+...|...+.+..... +...|..+|++..+. .|+ ...|..+..++... .+...+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3556677777777654422 255777888887776 343 33444433333221 1123334444433
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 318 LGR-RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 318 ~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
... ....+...|..+.-.....|++++|...+++.++.+ |+...|..+...+...|+.++|.+.+++..+.+|..+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 332 123345667766666666788888888888888764 6777888888888888888888888888888877755
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.0039 Score=49.11 Aligned_cols=122 Identities=11% Similarity=0.008 Sum_probs=83.6
Q ss_pred hHHHHHHHHHH-HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHhHHHHHH
Q 015329 273 WQANKLMGLMQ-RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP--NRKIYQTMIHYLCQEGDFNLAYIMC 349 (409)
Q Consensus 273 ~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 349 (409)
..+...+..+. ..+..-....|..+...+...|++++|...|+........+ ...++..+...+...|++++|...+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444442 22222235566777888888999999999999998663332 2357888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH-------hCCChH-------HHHHHHHHHHhcCCCCC
Q 015329 350 KDSMKKNWVPSVDTISALLEGLK-------KNNQPC-------KANTIMALVQRRVPHFS 395 (409)
Q Consensus 350 ~~m~~~~~~~~~~~~~~l~~~~~-------~~g~~~-------~a~~~~~~~~~~~~~~~ 395 (409)
+...... +....++..+...+. ..|+++ +|..++++.....|+..
T Consensus 96 ~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 96 FQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9988753 344556666666666 778877 55555555666665543
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.034 Score=46.64 Aligned_cols=57 Identities=16% Similarity=-0.017 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGR--RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
.+...|.+.|.+..|..-++.+.+. +..........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4566688888888888888888876 44445566777888888888888888776654
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.011 Score=49.70 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE---GDFNLAYIMCKDSMKKNWVPSVDTISA 366 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ 366 (409)
|...|-.|..+|.+.|+.+.|..-|.+..+... +|...+..+..++..+ ....++..+|++++..+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 677787888888888888888888887776622 2555566665555433 22456777888777765 556666677
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCCch
Q 015329 367 LLEGLKKNNQPCKANTIMALVQRRVPHFSSN 397 (409)
Q Consensus 367 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 397 (409)
|...+...|++.+|...|+.|.+..|+.++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 7777888888888888888888777766543
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.51 E-value=0.0025 Score=53.86 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHH
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN--WVPSVDTIS 365 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~ 365 (409)
..|...+..+.+.|++++|...|+.+.+. .|+ ...+-.+..+|...|++++|...|+.+.+.- -+.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445567777777777777765 232 2455667777777888888888887776541 122344555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 366 ALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 366 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.+...+...|+.+.|.++++.+.+..|...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566677778888888888888887776654
No 180
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.021 Score=49.87 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCChhhHHHHHHHHHhc
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISA--FYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~ 250 (409)
++.-.|+.++|.+.--...+.. ....+...+++ +...++.+.+...|++-+..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc
Confidence 3444556666655555444432 11222223322 22345555566555555543
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.0013 Score=54.73 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=78.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFN 343 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 343 (409)
.-..+.+++.+|+..|.+..+.... |.+.|..=..+|.+.|.++.|++-.+..+..+.. -..+|..|-.+|...|++.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3456788999999999999887533 6777777888999999999999888877765322 3467888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 344 LAYIMCKDSMKKNWVPSVDTISALL 368 (409)
Q Consensus 344 ~a~~~~~~m~~~~~~~~~~~~~~l~ 368 (409)
+|.+.|++.++. .|+-.+|..=+
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHH
Confidence 999999887765 57666665444
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.47 E-value=0.025 Score=43.81 Aligned_cols=152 Identities=12% Similarity=0.008 Sum_probs=93.8
Q ss_pred HHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329 50 ALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG 129 (409)
Q Consensus 50 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (409)
+..++...-||+..+.-...-... .|+..--..+..++.+.|+..+|...|++...-....+..+...+.++....+
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 334444445666554444333332 36666666788888888888888888888877666667777777888888888
Q ss_pred ChHHHHHHHHHhhhcCC-CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 015329 130 MIKHAMDTFYDMHLYGC-KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYL 207 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 207 (409)
++..|...++++.+... ..++.+.-.+.+.+...|....++.-|+.... .-|+...-......+.+.|+.+++..
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 88888888888766531 11233444556667777777766666644322 23444333333344555665555443
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.023 Score=46.54 Aligned_cols=141 Identities=7% Similarity=-0.024 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH-----
Q 015329 224 YTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI----- 298 (409)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li----- 298 (409)
-+.++..+...|.+.-....+++.++...+.++.....+...-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345555566667777777777777776656677777777777778888888888888776543333443333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 299 KGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISAL 367 (409)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 367 (409)
..|.-.+++.+|...++++...+.. |+...|.-.-+..-.|+...|.+.++.|++. .|...+-+.+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 3345566777777777777665333 4444443333334467777888887777765 4555544433
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.46 E-value=0.00044 Score=44.96 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=31.4
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 338 QEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
..|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++.+....|+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4556666666666655543 335555555666666666666666666666655554
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.44 E-value=0.037 Score=45.05 Aligned_cols=182 Identities=13% Similarity=0.048 Sum_probs=96.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 191 IVIKAFCEMGILDKAYLVMVEMQKLGVK--PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 191 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
.....+...|++++|.+.|+.+...... --....-.++.++.+.|+++.|...++.+.+.--.....-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 3445567778888888888888764221 12334456667788888888888888887765211111222222222222
Q ss_pred cCCHhHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329 269 KRRSWQANKLMGLMQRFGI---EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA 345 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 345 (409)
........ ...... .--...+..++.-|-...-..+|...+..+.+. =...--.+...|.+.|.+..|
T Consensus 90 ~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHH
T ss_pred HHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHH
Confidence 11111110 000000 001234555666666666666776666655433 111222356678888888888
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChHHHH
Q 015329 346 YIMCKDSMKK--NWVPSVDTISALLEGLKKNNQPCKAN 381 (409)
Q Consensus 346 ~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 381 (409)
..-++.+++. +.+........++.+|.+.|..+.+.
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888775 11122345567778888888877554
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00054 Score=44.55 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=25.4
Q ss_pred cCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 015329 92 GARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY 144 (409)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 144 (409)
..|++++|.++|+.+....+. +..++..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555555444332 3444444555555555555555555555443
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.40 E-value=0.015 Score=54.40 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33455555444445566666666666666553 45566666666666666666666666665544
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.012 Score=50.68 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHc-CChhhHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHh
Q 015329 201 ILDKAYLVMVEMQK----LGVKPD--VITYTTLISAFYKD-NRPEIGNGLWNLMVCK----GCF-PNLATFNVRIQHLVN 268 (409)
Q Consensus 201 ~~~~a~~~~~~m~~----~g~~~~--~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~ 268 (409)
++++|.+.+++..+ .| .++ ...+..+...|-.. |++++|++.|++..+. |.. .-...+..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 55555555554442 12 111 22344555666666 8999999999887542 311 113456677889999
Q ss_pred cCCHhHHHHHHHHHHHcCCC-----cCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHH
Q 015329 269 KRRSWQANKLMGLMQRFGIE-----PDEV-TYNLVIKGFCRSGHLDMAKKVYSAMLGR--RLMPN--RKIYQTMIHYLCQ 338 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~li~~~~~ 338 (409)
.|++++|.++|+++...... .+.. .+-..+-++...||+..|.+.+++.... ++..+ ......|+.+|-
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~- 246 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE- 246 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-
Confidence 99999999999998765432 2222 2333444667789999999999998866 33323 344556677664
Q ss_pred cCC---HhHHHHHHHH
Q 015329 339 EGD---FNLAYIMCKD 351 (409)
Q Consensus 339 ~g~---~~~a~~~~~~ 351 (409)
.|+ ++.+..-|+.
T Consensus 247 ~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDS 262 (282)
T ss_dssp TT-CCCHHHHCHHHTT
T ss_pred hCCHHHHHHHHHHHcc
Confidence 444 4444444443
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.37 E-value=0.017 Score=42.16 Aligned_cols=89 Identities=16% Similarity=-0.003 Sum_probs=46.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHH
Q 015329 193 IKAFCEMGILDKAYLVMVEMQKLGVKPD--VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN----LATFNVRIQHL 266 (409)
Q Consensus 193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~ 266 (409)
..++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445556666666666666666655432 2234444555666666666666666665431 22 11111222344
Q ss_pred HhcCCHhHHHHHHHHHH
Q 015329 267 VNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~ 283 (409)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55566666665554443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.014 Score=42.61 Aligned_cols=88 Identities=14% Similarity=0.042 Sum_probs=45.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHH
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN----RKIYQTMIHYLC 337 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~ 337 (409)
.++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++.... .|+ ......+.-++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 344556666666666666666654432 223444555566666666666666665544 122 111122223445
Q ss_pred HcCCHhHHHHHHHHHH
Q 015329 338 QEGDFNLAYIMCKDSM 353 (409)
Q Consensus 338 ~~g~~~~a~~~~~~m~ 353 (409)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666666554433
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.0024 Score=53.17 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=68.6
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
+.+.+++++|++.|..+++.. +-|...|..-..+|.+.|.++.|++-.+......+. ....|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 556677778888888777765 455566667777788888888877777777665432 35566677777888888888
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHH
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAAL 157 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll 157 (409)
|++.|++.++. .|+-.+|-.=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 88887777653 56666654433
No 192
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.23 E-value=0.013 Score=43.20 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK 194 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 194 (409)
+.++.++|.++++.|+++....+++..= |+.++... ..+. ........|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 4566667777777777777777665442 22222110 0000 3345567788888888888
Q ss_pred HHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcC
Q 015329 195 AFCEMGILDKAYLVMVEMQK-LGVKPDVITYTTLISAFYKDN 235 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~ 235 (409)
+|+.+|++..|+++++...+ .+++.+..+|..|++-+...-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 88888888888888888775 567777888888887655443
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.22 Score=47.27 Aligned_cols=311 Identities=13% Similarity=0.031 Sum_probs=175.0
Q ss_pred hHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCc--hh-HHHHHHHhhhCCCCCChhHHHHHHHH
Q 015329 48 PPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRF--DY-IEHLLEHQKSLPQGRREGFIMRIMML 124 (409)
Q Consensus 48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~-a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (409)
.-++.++...+.+..|+++-.++...- ......|......+++..+. ++ +..+-+++. ... ...-.|..+.+.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIARR 516 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHHH
Confidence 345667778889999999999985432 12245666666666665332 22 333333332 222 233345566666
Q ss_pred HHhcCChHHHHHHHHHhhhcCCC----CCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCC---------CCc-CHHHHH
Q 015329 125 YGKAGMIKHAMDTFYDMHLYGCK----RTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH---------IQF-DIFSFN 190 (409)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~-~~~~~~ 190 (409)
...+|+++.|..+++.=...+-. .+..-+...+.-+.+.|+.+....++-.+..+.. ..| ....|.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~ 596 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR 596 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 67889999998887654332211 1233455666667777777666666544433210 011 111122
Q ss_pred HHHHH--------HHhcCChhHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHHHcCChhhH----------HHHHHH
Q 015329 191 IVIKA--------FCEMGILDKAYLVMV--EMQ----KLGVKPDVITYTTLISAFYKDNRPEIG----------NGLWNL 246 (409)
Q Consensus 191 ~ll~~--------~~~~g~~~~a~~~~~--~m~----~~g~~~~~~~~~~ll~~~~~~~~~~~a----------~~~~~~ 246 (409)
-+++- +...++-..+...|. ... ..|..|+ .....+.+.+.....-. +.+.+.
T Consensus 597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22220 111111111111111 100 0111222 22333444444332111 111222
Q ss_pred HH-hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015329 247 MV-CKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN 325 (409)
Q Consensus 247 m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 325 (409)
+. +.|.....-+.+--+.-+...|+..+|.++-++.+ -||...|..=+.+++..+++++-+++-+.+. .
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------s 743 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------S 743 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------C
Confidence 22 12333344556666777788899999998888776 6788999989999999999988877766544 2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329 326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIM 384 (409)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 384 (409)
+.-|.-++.+|.+.|+.++|.+++-+.- +.. -...+|.+.|++.+|.+.-
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 3457778999999999999999887521 111 4567888889888887653
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0028 Score=40.65 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
..+.+.|++++|.+.|++..+.... +...+..+..++...|++++|...|+.+.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555554422 445555555555555555555555555544
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.027 Score=46.22 Aligned_cols=142 Identities=10% Similarity=-0.025 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH----
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI---- 263 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll---- 263 (409)
.-+.++......|.+.-...++.+..+...+.++.....|++.-.+.||.+.|...|+...+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556677777788899999999999998767788899999999999999999999999887654445555554443
Q ss_pred -HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 264 -QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTM 332 (409)
Q Consensus 264 -~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 332 (409)
..|.-.+++..|...+.+....+.. |....|.=.-+..-.|+...|.+.++.|... .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 3556678889999999888766432 4444444444444568999999999999977 4444444433
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.14 E-value=0.095 Score=42.69 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGR--RLMPNRKIYQTMIHYLCQEGDFNLA 345 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a 345 (409)
+...|.+.|.+..|..-++.+++. +..-.......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455677777777777777777665 1111223345666677777766643
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.12 E-value=0.021 Score=43.74 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG-----RRLMPNRKI 328 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 328 (409)
....++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.+.|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666677777777777666654 22566666777777777777777766666532 266666654
No 198
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.11 E-value=0.013 Score=43.17 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=41.7
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHH---------------cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 256 LATFNVRIQHLVNKRRSWQANKLMGLMQR---------------FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
..++..+|.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34555566666666666655555554321 122345555555555555555555555555555444
Q ss_pred -CCCCCHHHHHHHHHHH
Q 015329 321 -RLMPNRKIYQTMIHYL 336 (409)
Q Consensus 321 -~~~p~~~~~~~li~~~ 336 (409)
++..+..+|..|++-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 4444445555555443
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0026 Score=41.95 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=36.9
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 334 HYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
..|.+.+++++|.++++.++..+ +.+...+.....++.+.|++++|.+.++...+..|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 34556666666666666666653 4455555556666666666666666666666666543
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.08 E-value=0.0033 Score=40.92 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhhHHHHHHHHHh
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN-RPEIGNGLWNLMVC 249 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~ 249 (409)
+..|..+...+...|++++|+..|++..+.... +...|..+..++.+.| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445555555666666666666666666554322 4455555555555555 45666655555543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.016 Score=48.96 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR--LMPNRKIYQTMIH 334 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~ 334 (409)
|...+..+.+.|++++|...|+.+.+...... ...+-.+..+|...|++++|...|+.+.+.- -......+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33433333445566666666666555422110 2344455555666666666666666665431 1112233334444
Q ss_pred HHHHcCCHhHHHHHHHHHHhC
Q 015329 335 YLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~~ 355 (409)
.+...|+.++|.++|++.++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666665543
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.11 Score=40.45 Aligned_cols=131 Identities=11% Similarity=0.042 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-cCHHHHHH
Q 015329 218 KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-PDEVTYNL 296 (409)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ 296 (409)
-|+...--.|.++....|+..+|...|++....-+..|....-.+.++....+++..|...++++.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666677777777777777777777776555667777777777777777777777777777665311 01223345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK 350 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 350 (409)
+.+.+...|.++.|..-|+..... .|+...-......+.+.|+.+++..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 566777777777777777777655 4444444344444566666665554333
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.91 E-value=0.02 Score=49.99 Aligned_cols=132 Identities=11% Similarity=-0.012 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHH----HcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQ----RFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RL-MPNR 326 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~ 326 (409)
..|..+-..|.-.|+++.|+...+.-+ +.|-+. -...+..+..++.-.|+++.|.+.|+.-... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666778888776554432 223221 2345667777777788888888877764332 21 1233
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----NWVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
...-+|...|.-..++++|+.++.+-+.. +..-....++.|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556677777777788887776543321 123355678888888888888888887776654
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.099 Score=44.06 Aligned_cols=102 Identities=9% Similarity=-0.025 Sum_probs=71.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 015329 253 FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS---GHLDMAKKVYSAMLGRRLMPNRKIY 329 (409)
Q Consensus 253 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~ 329 (409)
+-|...|-.|-.+|...|+.+.|..-|.+..+... ++...+..+..++... .+..++..+|+++...+.. |+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 55778888888888888888888888888766532 2455555555544332 2356778888888776433 66666
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 330 QTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
..|...+...|++.+|...|+.|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 677777888888888888888887763
No 205
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.042 Score=51.41 Aligned_cols=206 Identities=11% Similarity=0.097 Sum_probs=103.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCCHH--hHH--HH--HHHHHccCCHHHHHHHHHhcCccCCCCc
Q 015329 112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY-GCKRTVK--SLN--AA--LKVLTESRDLKAIQAFLMEVPEKFHIQF 184 (409)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~--~~~--~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (409)
.|.+..|..|.......-.++.|+..|-+.... |++.--. +.. .+ .....--|++++|++++-++-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr----- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----
Confidence 456677776666666666666676666555432 2211000 000 00 11112246667777776544322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV--KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
| ..+..+.+.|||-.+.++++.--. +. .--...|+.+.+.+.....|++|.+.|..-... ...
T Consensus 764 D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 764 D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 1 244556666777666665543111 00 011345666666666666666666665443211 123
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
+.++.+..++++...+...+ +-+....-.+..++...|.-++|.+.+-+.- .| ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 44444444444444333333 2244455566777777777777776664322 11 2345556666666
Q ss_pred hHHHHHHHH
Q 015329 343 NLAYIMCKD 351 (409)
Q Consensus 343 ~~a~~~~~~ 351 (409)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 666665543
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.85 E-value=0.3 Score=43.22 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLG---VKPDVITYTTLISAFYK---DNRPEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
...++-+|....+++..+++++.+.... +.-+...--...-++-+ .|+.++|++++..+......+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344556777788888888888877641 11122222233344445 67778888887775555556677777766
Q ss_pred HHHHH
Q 015329 263 IQHLV 267 (409)
Q Consensus 263 l~~~~ 267 (409)
...|-
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 66554
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.82 E-value=0.018 Score=44.09 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCCHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK-----KNWVPSVDTIS 365 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 365 (409)
....++..+...|++++|..+.+.+...... |...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4455666777788888888888887776433 667788888888888888888888776643 37777776543
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.72 E-value=0.17 Score=38.39 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=17.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329 192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK 233 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 233 (409)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33444444444444444444444332 233344444444443
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=0.42 Score=42.75 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFG-IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIY-QTMIH 334 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 334 (409)
..|...+.+..+....+.|..+|-+..+.| +.+++..+++++..++ .|+...|..+|+--... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456666777777777888888888888877 5667777888887665 46777888888754433 3454444 34555
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 335 YLCQEGDFNLAYIMCKDSMKKNWVPS--VDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
-+...++-+.|..+|+..+++ +..+ ...|..++.--..-|+...+..+-+.+.+..|.-
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 666778878888888755443 2223 4578888887788888888877777777766543
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=96.68 E-value=0.1 Score=39.93 Aligned_cols=87 Identities=7% Similarity=-0.117 Sum_probs=54.1
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329 266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA 345 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 345 (409)
+...|++++|..+|.-+.-.+.. +..-+..|..+|-..+++++|...|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 34567777777777776655433 4455566666666677777777777665544322 333455566667777777777
Q ss_pred HHHHHHHHh
Q 015329 346 YIMCKDSMK 354 (409)
Q Consensus 346 ~~~~~~m~~ 354 (409)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766555
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.053 Score=45.04 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRL--MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN--WVPSVDTISALL 368 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~ 368 (409)
.|+.-+..| +.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.- -+--++.+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666544 56778888888888887621 1123345567888888888888888888877641 122346777888
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCCchh
Q 015329 369 EGLKKNNQPCKANTIMALVQRRVPHFSSNQ 398 (409)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 398 (409)
.+..+.|+.++|...|+++.+..|..+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888889999999999999988888776543
No 212
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.64 E-value=0.16 Score=37.11 Aligned_cols=141 Identities=12% Similarity=0.064 Sum_probs=82.7
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH
Q 015329 125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK 204 (409)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 204 (409)
..-.|.+++..++..+.... -+..-+|.++--....-+-+.+.++++.+-.-+++.+ .|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHH
Confidence 34567788888888887653 3556677777666666666677777765544433222 233333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 205 AYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 205 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
....+-.+- .+.......++.....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 75 Vi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 75 VIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333332221 244556667777788888888888888877633 66777777888888888888888888888888
Q ss_pred cCCC
Q 015329 285 FGIE 288 (409)
Q Consensus 285 ~~~~ 288 (409)
.|++
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 7764
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.64 E-value=0.42 Score=44.71 Aligned_cols=244 Identities=7% Similarity=-0.016 Sum_probs=118.0
Q ss_pred CCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHH-------------HHHhcCC--hHHHHHHHHHh
Q 015329 77 IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMM-------------LYGKAGM--IKHAMDTFYDM 141 (409)
Q Consensus 77 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-------------~~~~~~~--~~~a~~~~~~m 141 (409)
.+.+..+.+-+..+...|.+++|.++- .......-|..|.. +|.+-.+ +-+.+.-++++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~ 626 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEER 626 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444555556667777777765542 11222222332222 3333322 22333344556
Q ss_pred hhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------
Q 015329 142 HLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVM------------ 209 (409)
Q Consensus 142 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------------ 209 (409)
++.|-.|+... +...++-.|.+.+|-++|.+ .|.. |..+..|-....+|.|.+++
T Consensus 627 k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~----~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 627 KKRGETPNDLL---LADVFAYQGKFHEAAKLFKR----SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH----cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 66665566542 34556667777777777733 2322 11223333333333333332
Q ss_pred HHHHh--CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH------HHhcCC---CCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329 210 VEMQK--LGVKPDVITYTTLISAFYKDNRPEIGNGLWNL------MVCKGC---FPNLATFNVRIQHLVNKRRSWQANKL 278 (409)
Q Consensus 210 ~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~ 278 (409)
++-.+ .+++-. .+..+.+...|+.++|..+.-+ +.+-+- ..+..+...+...+-+...+.-|-++
T Consensus 694 RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 694 RKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred HHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 21111 011111 1233444556666666554311 111111 12333444444445556666777777
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHHcCCHhHHHH
Q 015329 279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRK-----------IYQTMIHYLCQEGDFNLAYI 347 (409)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~ 347 (409)
|.+|-.. ..+++.....+++.+|..+-+...+. .||+. -|...-++|.++|+-.+|.+
T Consensus 770 F~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 770 FLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred HHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 7776421 34666777788888888877765543 23321 12233455666666666666
Q ss_pred HHHHHHh
Q 015329 348 MCKDSMK 354 (409)
Q Consensus 348 ~~~~m~~ 354 (409)
+++++..
T Consensus 839 vLeQLtn 845 (1081)
T KOG1538|consen 839 VLEQLTN 845 (1081)
T ss_pred HHHHhhh
Confidence 6666544
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.7 Score=44.03 Aligned_cols=284 Identities=12% Similarity=0.112 Sum_probs=167.0
Q ss_pred HHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329 85 DTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGM--IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE 162 (409)
Q Consensus 85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 162 (409)
.+|+-+...+.+..|+++-..+...... ...+|.....-+.+..+ -+++.+..++=..... .....|..+.+-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 3577788889999999998877533222 25667777777766632 2233333332222212 334567778888888
Q ss_pred cCCHHHHHHHHHhcCccCCCC----cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH----------
Q 015329 163 SRDLKAIQAFLMEVPEKFHIQ----FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLI---------- 228 (409)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll---------- 228 (409)
.|+.+.|..++ +...+.+.. .+..-+...+.-+.+.||.+....++-.+.+. .+...|...+
T Consensus 520 ~GR~~LA~kLl-e~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~~~p~a~~lY 595 (829)
T KOG2280|consen 520 EGRFELARKLL-ELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLRNQPLALSLY 595 (829)
T ss_pred cCcHHHHHHHH-hcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHhchhhhHHH
Confidence 99999999998 443332211 12233556677788888888888887777653 1222222211
Q ss_pred HHHHH------------cCChhhHHHHHH--HHH----hcCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHH
Q 015329 229 SAFYK------------DNRPEIGNGLWN--LMV----CKGCFPNLATFNVRIQHLVNKRR----------SWQANKLMG 280 (409)
Q Consensus 229 ~~~~~------------~~~~~~a~~~~~--~m~----~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~ 280 (409)
.-+++ .++-.++...|. ... ..|..|+. ...-..+.+... ..+-+.+.+
T Consensus 596 ~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~ 672 (829)
T KOG2280|consen 596 RQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQR 672 (829)
T ss_pred HHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 11111 111111111110 000 01222222 223334443332 112222333
Q ss_pred HHH-HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 015329 281 LMQ-RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP 359 (409)
Q Consensus 281 ~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 359 (409)
.+. +.|......+.+--+.-+...|+..+|.++-.+.+ -||-..|..=+.+++..+++++-+++-+.+.
T Consensus 673 ~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------ 742 (829)
T KOG2280|consen 673 TLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------ 742 (829)
T ss_pred HHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------
Confidence 332 22333444455666677778899999999888766 5788999999999999999999888766532
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329 360 SVDTISALLEGLKKNNQPCKANTIMALV 387 (409)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 387 (409)
.+.-|.-++.+|.+.|+.++|.+++-+.
T Consensus 743 sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 743 SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 2556778899999999999999987654
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.60 E-value=0.22 Score=38.21 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=49.1
Q ss_pred HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329 232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (409)
...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 35666666666666666543 234444455555555666666666666665444322 3333444555666666666666
Q ss_pred HHHHHHHh
Q 015329 312 KVYSAMLG 319 (409)
Q Consensus 312 ~~~~~m~~ 319 (409)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666655
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.58 E-value=0.022 Score=37.44 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=29.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
.|.+.+++++|.++++.+...+.. +...+.....++...|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555566666666655554322 4444555555555566666666665555544
No 217
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.54 E-value=0.26 Score=42.52 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=70.4
Q ss_pred hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc--cCCH----HHHHHHHHhcCccCCC--CcCHHHHHHHHHHHHhcCC-
Q 015329 131 IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE--SRDL----KAIQAFLMEVPEKFHI--QFDIFSFNIVIKAFCEMGI- 201 (409)
Q Consensus 131 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~----~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~- 201 (409)
+++.+.+++.|.+.|.+.+..+|-+....... ..++ ..+..+++.|.++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888887776554333333 2222 6677777777655443 3344455555443 2233
Q ss_pred ---hhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--hhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 202 ---LDKAYLVMVEMQKLGVKPDV--ITYTTLISAFYKDNR--PEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 202 ---~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
.+.++.+|+.+.+.|+..+- ...+.++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24556666666666654332 222333322221111 33566666666666666665555443
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.51 E-value=0.032 Score=48.83 Aligned_cols=130 Identities=9% Similarity=-0.039 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHH----hcCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CcCHH
Q 015329 223 TYTTLISAFYKDNRPEIGNGLWNLMV----CKGCF-PNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GI-EPDEV 292 (409)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~ 292 (409)
.|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+-.++.-.|+++.|.+.|+.-... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666677777766554422 22211 12345566666777777777777777654322 21 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
+.-+|..+|.-..++++|+.++.+-... ...-....|.+|..+|...|.-++|+.+...-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4445666666666777777766543221 11224456677777777777777776655543
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.47 E-value=0.01 Score=39.64 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 015329 295 NLVIKGFCRSGHLDMAKKVYSA 316 (409)
Q Consensus 295 ~~li~~~~~~g~~~~a~~~~~~ 316 (409)
+.+...|...|++++|+..|++
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333344444444444444433
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.46 E-value=0.16 Score=46.60 Aligned_cols=159 Identities=12% Similarity=0.055 Sum_probs=82.8
Q ss_pred HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329 88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK 167 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 167 (409)
+...-.++++++.++.+.-.-. +..+......++..+-+.|-.+.|+++-.+-. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3444556666665555421111 11234556667777777777777776654332 2244556677777
Q ss_pred HHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 015329 168 AIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLM 247 (409)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 247 (409)
.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+..
T Consensus 336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 776665322 1455677777777777777777777666432 344555556666666666666555
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 015329 248 VCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL 281 (409)
Q Consensus 248 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 281 (409)
...|- ++....++.-.|+.++..+++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55541 44455555556666666655544
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.44 E-value=0.011 Score=39.61 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----C-CCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----N-WVPS-VDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
..+|+.+...|...|++++|+..|++.++. | -.|+ ..++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356888999999999999999999988753 2 1122 56788888999999999999999998764
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.36 E-value=0.44 Score=44.37 Aligned_cols=163 Identities=13% Similarity=0.058 Sum_probs=110.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC------HhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHHH
Q 015329 224 YTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN------LATFNVRIQHLVN----KRRSWQANKLMGLMQRFGIEPDEVT 293 (409)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~ 293 (409)
+..+++..+-.|+-+.+++.+.+-.+.+-... .-.|+.++..++. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34566666778999999998888766432211 2344555544443 45678899999999877 567666
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 015329 294 YNLV-IKGFCRSGHLDMAKKVYSAMLGR--RL-MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL- 368 (409)
Q Consensus 294 ~~~l-i~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~- 368 (409)
|... .+.+...|++++|.+.|++.... .. +.....+--+...+.-.++|++|.+.|..+.+.. ..+..+|..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5444 34567789999999999976642 11 1233345556677888999999999999998864 33455555544
Q ss_pred HHHHhCCCh-------HHHHHHHHHHHh
Q 015329 369 EGLKKNNQP-------CKANTIMALVQR 389 (409)
Q Consensus 369 ~~~~~~g~~-------~~a~~~~~~~~~ 389 (409)
.++...|+. ++|.+++.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445567777 888888887643
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.97 Score=42.86 Aligned_cols=292 Identities=12% Similarity=0.072 Sum_probs=134.5
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhC-CCCCChhHHHHHHHHHHhcCChHHHHH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL-PQGRREGFIMRIMMLYGKAGMIKHAMD 136 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (409)
|.+++|.+++-.+-+++ ..|....+.|++-.+.++++.-... ....-...++.+...++....|++|.+
T Consensus 748 g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443332 2445555666666665555442211 111124455666666666666666666
Q ss_pred HHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329 137 TFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG 216 (409)
Q Consensus 137 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 216 (409)
.|..-.. -...+.++....++++.+.+...+.++ ....-.+..++.+.|.-++|.+.|-+-..
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~------s~llp~~a~mf~svGMC~qAV~a~Lr~s~-- 880 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPED------SELLPVMADMFTSVGMCDQAVEAYLRRSL-- 880 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc------cchHHHHHHHHHhhchHHHHHHHHHhccC--
Confidence 6654321 123445555555555655555444433 33344555666666666666665533221
Q ss_pred CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-----------CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH-
Q 015329 217 VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC-----------FPNLATFNVRIQHLVNKRRSWQANKLMGLMQR- 284 (409)
Q Consensus 217 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~- 284 (409)
| ...+..|...++|.+|.++-+...-..+ -.+..+ ---|..+.+.|+.-+|-+++.+|.+
T Consensus 881 --p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 881 --P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred --c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHH
Confidence 1 1233455555556555554433211000 001111 1234556666666666666666632
Q ss_pred ---cCCCcCH----HHHHHH-HHHH----------HhcCCHHHHHHHHHHHHhC---CC----CCCHHHHH--HHHHHHH
Q 015329 285 ---FGIEPDE----VTYNLV-IKGF----------CRSGHLDMAKKVYSAMLGR---RL----MPNRKIYQ--TMIHYLC 337 (409)
Q Consensus 285 ---~~~~p~~----~~~~~l-i~~~----------~~~g~~~~a~~~~~~m~~~---~~----~p~~~~~~--~li~~~~ 337 (409)
.+.++-. +...++ +.-+ -+.|..++|..+++...-. .+ --....|. .|.+--.
T Consensus 953 e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql 1032 (1189)
T KOG2041|consen 953 EQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQL 1032 (1189)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 2332211 111111 1111 1234455555444332111 00 01223333 3334445
Q ss_pred HcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329 338 QEGDFNLAYIMCKDSMKK-NWVPSVDTISALLEGLKKNNQPCKANTIM 384 (409)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 384 (409)
..|.++.|++.--.+.+. .+-|....|..+.-+-+....+-..-+.|
T Consensus 1033 ~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1033 FEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 567777777654444332 35677777777665444444443333333
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.35 E-value=0.25 Score=36.10 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=80.4
Q ss_pred HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329 232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (409)
.-.|.++++.++..+..... +..-+|-+|.-....-+-+-..++++.+-+. .|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHH
Confidence 34678888888888877754 5555666665555555555555555554321 1211 233444433
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
..+-.+- .+...+...+..+...|.-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.++-+++
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3332211 244556667778888888888888888876543 7888888888888888888888888888887776
Q ss_pred C
Q 015329 392 P 392 (409)
Q Consensus 392 ~ 392 (409)
.
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.1 Score=43.83 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=101.5
Q ss_pred HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH---Hcc
Q 015329 87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL---TES 163 (409)
Q Consensus 87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~ 163 (409)
.......|++.+|..+|+........ +......++.+|...|+.+.|..++..+....-.........-|..+ ...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34567889999999999998876554 35555668999999999999999999986543222222222223334 444
Q ss_pred CCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhhHH
Q 015329 164 RDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL--GVKPDVITYTTLISAFYKDNRPEIGN 241 (409)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~ 241 (409)
++....+.-+. .. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..+++.+.-.|.-+.+.
T Consensus 220 ~~~~~l~~~~a---ad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 220 PEIQDLQRRLA---AD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCHHHHHHHHH---hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHH
Confidence 55555555442 22 126667777888999999999999887777653 444 6777788888887777555444
Q ss_pred HHH
Q 015329 242 GLW 244 (409)
Q Consensus 242 ~~~ 244 (409)
..+
T Consensus 293 ~~~ 295 (304)
T COG3118 293 LAY 295 (304)
T ss_pred HHH
Confidence 333
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.25 E-value=0.11 Score=43.28 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=37.3
Q ss_pred CcCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329 183 QFDIFSFNIVIKAFCEM-----GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK 233 (409)
Q Consensus 183 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 233 (409)
+.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 44777777777776543 5567777778888888888888888888876643
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.48 Score=39.99 Aligned_cols=208 Identities=13% Similarity=0.042 Sum_probs=130.5
Q ss_pred HHHHHHHHHhhcCCCCCCccchHH--HHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 015329 61 EKLFQLFKANAHNRIVIENKYAFE--DTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF 138 (409)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (409)
+.--.+--.+.-+. .|+...+. .-+..+-..-.-+...++++..... .....+ .-.......|++.+|..+|
T Consensus 84 D~~p~vAaqfgiqs--IPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~---~~e~~~-~~~~~~~~~e~~~~a~~~~ 157 (304)
T COG3118 84 DAEPMVAAQFGVQS--IPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA---EEEEAL-AEAKELIEAEDFGEAAPLL 157 (304)
T ss_pred CcchhHHHHhCcCc--CCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh---HHHHHH-HHhhhhhhccchhhHHHHH
Confidence 33333444443333 35554443 2345554444444566666665433 122222 2344567899999999999
Q ss_pred HHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 015329 139 YDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK 218 (409)
Q Consensus 139 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 218 (409)
+...... +-+...--.+..+|...|+.+.+..++..+..+..- ........-|..+.+.....+...+-.+.-. .
T Consensus 158 ~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---d 232 (304)
T COG3118 158 KQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATPEIQDLQRRLAA---D 232 (304)
T ss_pred HHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---C
Confidence 9988765 445667778999999999999999999777654221 1122233445666666666666666666555 3
Q ss_pred C-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329 219 P-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKG-CFPNLATFNVRIQHLVNKRRSWQANKLM 279 (409)
Q Consensus 219 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 279 (409)
| |...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.-.|..+.+..-+
T Consensus 233 Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 233 PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4 66666778888999999999988776665542 2345666777888887777444443333
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.19 E-value=0.055 Score=44.94 Aligned_cols=106 Identities=13% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCCHHhHHHHHHHHHcc-----CCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 015329 147 KRTVKSLNAALKVLTES-----RDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV 221 (409)
Q Consensus 147 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 221 (409)
+.|-.+|-..+..+... +.++-....++.| ..+|+..|..+|+.|++.+-+-. +.|.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgk----------------fiP~- 125 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGK----------------FIPQ- 125 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccc----------------cccH-
Confidence 55677777777777554 3334444444333 56788888888888887665422 1222
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329 222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS 272 (409)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 272 (409)
..|..+.-.|- .+-+-++.++++|...|+.||-.+-..+++++.+.+-.
T Consensus 126 nvfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 126 NVFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 12222222221 22334667777777777777777777777777766543
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.13 E-value=0.63 Score=38.53 Aligned_cols=189 Identities=11% Similarity=0.069 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGV--KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
.|+--+ .-.+.|++++|.+.|+.+....+ +-...+--.++-++.+.+++++|+...++..+.--.....-|-..|.+
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 344333 34567888888888888876432 123445555666777788888888888777764322223334444444
Q ss_pred HHhc-------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329 266 LVNK-------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ 338 (409)
Q Consensus 266 ~~~~-------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 338 (409)
.+.- .|...+..-+..+. .++.-|-+..=...|..-...+... =...=..+.+-|.+
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~k 179 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLK 179 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4421 12222222222221 1222222222122222222222111 00001234566888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 339 EGDFNLAYIMCKDSMKKNWVPS---VDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 339 ~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
.|.+-.|..-+++|++. .+-+ ...+-.+..+|...|..++|.+.-+-+..+.|+.
T Consensus 180 r~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 180 RGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred hcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 88888888888888876 3333 3455666688889999999988877666665554
No 230
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.92 Score=40.17 Aligned_cols=254 Identities=10% Similarity=-0.014 Sum_probs=144.0
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
..+..++..|++.+..+++.. +-+...|..-...+...|+++++.--.+.-.+...... ......-+++...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~-k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS-KGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-ccccchhhhhhhhHHHHH
Confidence 445678888999999988876 33444566666667777888877766655544433211 122223333333444444
Q ss_pred HHHHHH---------------HhhhcCC-CCCHHhHHHHH-HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH--
Q 015329 134 AMDTFY---------------DMHLYGC-KRTVKSLNAAL-KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK-- 194 (409)
Q Consensus 134 a~~~~~---------------~m~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~-- 194 (409)
|.+.|+ ......- +|...+|..+- .++.-.++.+.+...--.+++-.. ...+..+++
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~----~n~~al~vrg~ 211 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA----TNAEALYVRGL 211 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc----chhHHHHhccc
Confidence 443333 2211111 23333443332 234455676666665434433311 122333333
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHHcCChhhHHHHHHHHHhc---CCCCCHhh
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKPDVITY-------------TTLISAFYKDNRPEIGNGLWNLMVCK---GCFPNLAT 258 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-------------~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~ 258 (409)
++.-.++.+.+...|++.+..+ |+...- ..=.+-..+.|++..|.+.|.+.+.. +..++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 4456778999999999998764 443321 12223345678888888888887753 24456666
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhC
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV---IKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
|.....+..+.|+..+|+.--+...+. |..-...+ ..++...+++++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 766777777888888888777766643 33222222 23445567788888888777665
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.00 E-value=0.46 Score=43.67 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 344455555555555555555555443321 333444444444444444444443333
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.99 E-value=1.1 Score=39.93 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=59.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC---CCCCHHhHHHHHHHHHc---cCCHHHHHHHHHhcCccCCCCcC
Q 015329 112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG---CKRTVKSLNAALKVLTE---SRDLKAIQAFLMEVPEKFHIQFD 185 (409)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~ 185 (409)
..+..+...++-+|....+++..+++.+.+.... +.-+..+-....-++-+ .|+.+.|..++..+... .-.++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~ 216 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPD 216 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCC
Confidence 3355666677778888888888888888887531 11122222233444555 67778888887663332 23455
Q ss_pred HHHHHHHHHHHHhc---------CChhHHHHHHHHHHh
Q 015329 186 IFSFNIVIKAFCEM---------GILDKAYLVMVEMQK 214 (409)
Q Consensus 186 ~~~~~~ll~~~~~~---------g~~~~a~~~~~~m~~ 214 (409)
..+|..+...|-.. ..+++|+..|.+.-+
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 66666666655321 124556666655544
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.96 E-value=0.23 Score=44.98 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329 155 AALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ 213 (409)
Q Consensus 155 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 213 (409)
.+..++.+.|+.++|.+.++++++.....-.......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555566666666555555443221123345555566666666666666655544
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.95 E-value=0.94 Score=39.00 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329 187 FSFNIVIKAFCEMGILD---KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI 263 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 263 (409)
.++..++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+.+.+++..|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34666667777666544 445555555443222 24445455566666777777777777777652 22334444444
Q ss_pred HHH---HhcCCHhHHHHHHHHHHHcCCCcC
Q 015329 264 QHL---VNKRRSWQANKLMGLMQRFGIEPD 290 (409)
Q Consensus 264 ~~~---~~~~~~~~a~~~~~~~~~~~~~p~ 290 (409)
..+ .... ...+...+..+....+.|.
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 444 2222 3344444544443333333
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.93 E-value=1.3 Score=40.42 Aligned_cols=189 Identities=14% Similarity=0.028 Sum_probs=97.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKPDVI-TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW 273 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 273 (409)
-.-+..+...-++.-.+..+. .||.. .|..| +--......++++++++..+.|- ..+. +.....
T Consensus 177 ~AWRERnp~aRIkaA~eALei--~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE----~~lg-------~s~~~~ 241 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEI--NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGE----ASLG-------KSQFLQ 241 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHH----Hhhc-------hhhhhh
Confidence 333444555555555555543 33332 22222 22234557788888888766541 1110 000000
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
..-..++........+-..+=..+..++-+.|+.++|.+.+++|.+.... -+..+...|+.++...+.+.++..++.+.
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 00011112222222222333344566667788888888888888765221 23446677888888888888888888775
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhCCC---------------hHHHHHHHHHHHhcCCCCCchh
Q 015329 353 MKKNWVPS-VDTISALLEGLKKNNQ---------------PCKANTIMALVQRRVPHFSSNQ 398 (409)
Q Consensus 353 ~~~~~~~~-~~~~~~l~~~~~~~g~---------------~~~a~~~~~~~~~~~~~~~~~~ 398 (409)
-+...+.+ ..+|+..+-.....++ -..|.+.+.++.+.+|..++-.
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 43322222 2345554433222222 1345677888888887766543
No 236
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.57 Score=36.15 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=60.0
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCC-ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChh-HHHH--HHHHHHhcC
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIE-NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREG-FIMR--IMMLYGKAG 129 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~~ 129 (409)
+++.+.+++|+.-|..+.+.| ... .....-.........|+...|...|+++-.....|... -... -...+..+|
T Consensus 68 lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 445566777777777666554 111 01111122334456666666666666665443222211 1111 122344556
Q ss_pred ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc
Q 015329 130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK 179 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 179 (409)
.++....-.+-+...+-+.....-..|.-+-.+.|++..+..+|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66666555555544332223333344555555566666666666555443
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.90 E-value=0.24 Score=44.66 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=44.5
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE----VTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 254 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566777777777777777777777777665 3332 34667777777777777777777777664
No 238
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.74 E-value=1.9 Score=43.64 Aligned_cols=101 Identities=9% Similarity=0.025 Sum_probs=51.7
Q ss_pred HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329 232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (409)
...+.+++|--.|+..-+. .-.+.+|..+|+|.+|..+-.++....-+ -..+-..|+.-+...++.-+|-
T Consensus 950 ~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 950 REELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHH
Confidence 3445555555555443321 23455666677777776666655321100 0111245556666667766666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329 312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK 350 (409)
Q Consensus 312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 350 (409)
++..+.... ....+..|++...+++|..+..
T Consensus 1020 ~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1020 KILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence 666665543 2233444455555666655543
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.71 E-value=0.26 Score=44.42 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV----ITYTTLISAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555556666666666666666555542 221 23555555556666666666555555543
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.60 E-value=0.55 Score=35.17 Aligned_cols=113 Identities=12% Similarity=0.009 Sum_probs=62.9
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGI--EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
...+.|++++|.+.|+.+...-. +-....--.|+.+|.+.|++++|...+++.++....--..-|...+.+++.....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 34566778888888877766521 1134455567777778888888888888777764332223355555555433322
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 343 NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 343 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
+.. +..+. +..-|. +....|..-|+.+.+..|+..
T Consensus 99 ~~~---~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 99 EGS---LQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhH---Hhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 211 11111 111121 224477777777777776653
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.58 E-value=0.38 Score=44.76 Aligned_cols=164 Identities=10% Similarity=-0.060 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh------hHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCCHHh
Q 015329 83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE------GFIMRIMMLYGK----AGMIKHAMDTFYDMHLYGCKRTVKS 152 (409)
Q Consensus 83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 152 (409)
+..+++..+=.|+-+.+++++....+.+.-..+ -.|..++..+.. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 455666666677777777777665543221111 113333333332 45677777777777765 466665
Q ss_pred HHH-HHHHHHccCCHHHHHHHHHhcCccCC-C-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 153 LNA-ALKVLTESRDLKAIQAFLMEVPEKFH-I-QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLIS 229 (409)
Q Consensus 153 ~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 229 (409)
|.. -.+.+...|+++.|...++....... . +.....+--+.-.+.-.++|++|.+.|..+.+..- -+..+|.-+.-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 543 33455666777888777764332111 1 12234455566677778889999999998887532 24444444433
Q ss_pred H-HHHcCCh-------hhHHHHHHHHHh
Q 015329 230 A-FYKDNRP-------EIGNGLWNLMVC 249 (409)
Q Consensus 230 ~-~~~~~~~-------~~a~~~~~~m~~ 249 (409)
+ +...++. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 3345666 788888877643
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.58 E-value=0.71 Score=34.89 Aligned_cols=126 Identities=14% Similarity=0.067 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329 225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS 304 (409)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 304 (409)
..++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+..+.++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555566666666666666655 355566666666666543 3333333332 11223334456666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329 305 GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE-GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK 373 (409)
Q Consensus 305 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 373 (409)
+-++++..++.++.. +...+..+... ++++.|.+++.+- + +...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~---~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---N---NPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---C---CHHHHHHHHHHHHc
Confidence 666666666655431 22233333333 6666666665541 1 34466666655543
No 243
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.45 E-value=1.5 Score=37.90 Aligned_cols=132 Identities=9% Similarity=0.074 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----ChhhHHHHHHHHHhcCC---CCCHhhHHHHHHHHHhcCCH
Q 015329 202 LDKAYLVMVEMQKLGVKPDVITYTTLISAFYK--DN----RPEIGNGLWNLMVCKGC---FPNLATFNVRIQHLVNKRRS 272 (409)
Q Consensus 202 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~ 272 (409)
++..+.+++.|.+.|+.-+..+|-+....... .. ....+..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888888888777776654333332 22 24568888999988641 2344555555443 33333
Q ss_pred ----hHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 273 ----WQANKLMGLMQRFGIEPDE--VTYNLVIKGFCRSGH--LDMAKKVYSAMLGRRLMPNRKIYQTMIHY 335 (409)
Q Consensus 273 ----~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 335 (409)
+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 4567778888887776542 233333332222211 45778888889988888877776655433
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.43 E-value=0.42 Score=34.92 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=23.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 302 CRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
+..|+.+.|++.|...+..-. -....||.=.+++.-.|+.++|+.=+++.++
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344445555555444443311 1334444444444444555544444444443
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.35 E-value=2 Score=38.64 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhH-HHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLG-VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATF-NVRI 263 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll 263 (409)
...|...|+.-.+..-++.|..+|-++.+.| +.+++..++++|.-++ .|+..-|..+|+.-... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4568888888888888999999999999988 6678888899988665 58899999999876654 3444443 5567
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC 337 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 337 (409)
..+...++-+.|..+|+.....= ..+ ...|..+|..-..-|+...+..+=+.|.+. .|...+...+..-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 77788899999999999543220 112 467889999889999999888888888765 455545444544444
No 246
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.34 E-value=2.6 Score=39.81 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=72.7
Q ss_pred HHHHHHhcCChhHHHHHHH------HHHhCCCCC---CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 192 VIKAFCEMGILDKAYLVMV------EMQKLGVKP---DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~------~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
....+...|+.++|..+.- -+.+.+-+. +..+...+..-+.+...+..|-++|..|-.. ..+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 3445566777777765422 222222222 3334444444445566777888888877542 356
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEV-----------TYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
++.....+++++|..+-+..-+. .||++ -|.-.-.+|.+.|+-.+|.++++.+...
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 67778889999998887765433 23322 2344556788889999999998887654
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.93 Score=39.01 Aligned_cols=154 Identities=10% Similarity=-0.011 Sum_probs=85.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH--hhH--HHHHHHHHhcCCH
Q 015329 197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL--ATF--NVRIQHLVNKRRS 272 (409)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~--~~ll~~~~~~~~~ 272 (409)
...|++.+|-..++++.+.-+ .|...+.-.=.+|...|+.+.-...++++.-.- .+|. .+| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 345666676666777766532 366666666667777777777666666665431 1222 222 2223344456777
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 015329 273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR---RLMPNRKIYQTMIHYLCQEGDFNLAYIMC 349 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 349 (409)
++|++.-++..+.+ +.|.-...+....+--.|+..++.++..+-... +-..-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777666554 225555556666666667777777666554332 11111122223333344556777777777
Q ss_pred HHHH
Q 015329 350 KDSM 353 (409)
Q Consensus 350 ~~m~ 353 (409)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6533
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.29 E-value=0.54 Score=35.24 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=50.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 299 KGFCRSGHLDMAKKVYSAMLGRR--LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
....+.|++++|.+.|+.+...- -.-....--.++.+|.+.|++++|...+++.++..-.....-|...+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 33456788888888888887761 1113345566788888888888888888888776411112345555555554433
Q ss_pred hH
Q 015329 377 PC 378 (409)
Q Consensus 377 ~~ 378 (409)
.+
T Consensus 98 ~~ 99 (142)
T PF13512_consen 98 DE 99 (142)
T ss_pred hh
Confidence 33
No 249
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.25 E-value=2.2 Score=38.48 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=47.0
Q ss_pred hCCCCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 319 GRRLMPNRKI-YQTMIHYLCQEGDFNLAYIMCKDSMKKNWV----PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 319 ~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
..-+.|+... ...++..+.. +.+++..+.+.+....+. --..++..++...++.++...|.+.+..++-..|.
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 3345565433 3344444443 455555555444332211 23457888999999999999999999988888776
Q ss_pred CC
Q 015329 394 FS 395 (409)
Q Consensus 394 ~~ 395 (409)
.+
T Consensus 331 ~s 332 (549)
T PF07079_consen 331 IS 332 (549)
T ss_pred ch
Confidence 65
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.42 Score=42.14 Aligned_cols=128 Identities=16% Similarity=0.082 Sum_probs=84.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHc-----CCCc---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015329 262 RIQHLVNKRRSWQANKLMGLMQRF-----GIEP---------DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRK 327 (409)
Q Consensus 262 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 327 (409)
--..|.+.|++..|..-|++.... +..+ -..++..+..+|.+.+++.+|++.-...+..+. +|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cchh
Confidence 347888999999999998886542 2221 123456677778888888888888888777643 3666
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCC-hHHHHHHHHHHHhcCC
Q 015329 328 IYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTI-SALLEGLKKNNQ-PCKANTIMALVQRRVP 392 (409)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 392 (409)
..-.=..+|...|+++.|...|+.+++. .|+-... .-|+..-.+... .+...++|..|...-.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6666777888888888888888888775 3444444 334433333333 3344677777765543
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.17 E-value=0.86 Score=33.36 Aligned_cols=93 Identities=15% Similarity=-0.012 Sum_probs=64.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHH---HHHHHHhcC
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNV---RIQHLVNKR 270 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~ 270 (409)
-+....|+++.|++.|.+....-.+ ....||.-..++.-.|+.++|+.=+++..+..-..+...+.+ -...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567788888888888888775433 677888888888888888888888877766432223333322 333566678
Q ss_pred CHhHHHHHHHHHHHcCC
Q 015329 271 RSWQANKLMGLMQRFGI 287 (409)
Q Consensus 271 ~~~~a~~~~~~~~~~~~ 287 (409)
+-+.|..=|+..-+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888877766663
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.12 E-value=1.5 Score=35.88 Aligned_cols=202 Identities=11% Similarity=-0.019 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH-H
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKL-GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ-H 265 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~ 265 (409)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3344444444444444444444444321 111233333334444444444444554444444432111 111111111 4
Q ss_pred HHhcCCHhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 015329 266 LVNKRRSWQANKLMGLMQRFGI--EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFN 343 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 343 (409)
+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 4555555555555555533211 01222222223334455555666655555554411112344555555555555566
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 344 LAYIMCKDSMKKNWVPS-VDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 344 ~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
.+...+....... |+ ...+..+...+...+..+.+...+....+..+
T Consensus 220 ~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 220 EALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6666555554432 22 23333333333344556666655555555444
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=0.45 Score=39.69 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=59.1
Q ss_pred hhhhcCChHHHHHHHHHhhcCCC-CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcC
Q 015329 53 KLKAERDPEKLFQLFKANAHNRI-VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR--EGFIMRIMMLYGKAG 129 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 129 (409)
.+...|++..|.+.|....+..+ -.-...++--|..++...|++++|..+|..+.+..+... ++.+.-|..+..+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 34455567888888877766641 111223455677777788888888888777765433221 455555777777778
Q ss_pred ChHHHHHHHHHhhhc
Q 015329 130 MIKHAMDTFYDMHLY 144 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~ 144 (409)
+.++|..+|+++.+.
T Consensus 230 ~~d~A~atl~qv~k~ 244 (262)
T COG1729 230 NTDEACATLQQVIKR 244 (262)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888777654
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=1.2 Score=43.27 Aligned_cols=247 Identities=13% Similarity=0.051 Sum_probs=118.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHH----HHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329 119 MRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLN----AALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK 194 (409)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 194 (409)
..-+....+...++-|+.+-+.-. .+..+.. ...+-+.+.|++++|...|-+-... +.|. .++.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHH
Confidence 344555566666666666544432 2222222 2333344567776666555332211 2221 2445
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ 274 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 274 (409)
-|....++..-..+++.+.+.|+. +...-+.|+++|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 555555666666666777776665 55555667777777777776665555443 2211 1113345555555665565
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
|..+-.+... +......++ -..|++++|++++..+.-....++...|...+ . ....++-..++-+...
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILIELIT 549 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHHHHHh
Confidence 5554444321 223333333 34567777777776543221112222222211 1 2334444444444433
Q ss_pred CCCCCCHHHHHH-----HHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 355 KNWVPSVDTISA-----LLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 355 ~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
...++....... +-....-.++++....+++.|.+..++
T Consensus 550 ~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~ 593 (933)
T KOG2114|consen 550 ELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPD 593 (933)
T ss_pred hcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCC
Confidence 322222222221 112234455666666666666555443
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.71 E-value=0.076 Score=30.75 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
++..+...|...|++++|+++++++.+..|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 455556666666666666666666666665543
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=1.7 Score=42.18 Aligned_cols=177 Identities=11% Similarity=0.128 Sum_probs=95.8
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHH----HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIM----RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL 157 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 157 (409)
....-+..+.+..-++.|..+-+.-. .+..+.. .....+.+.|++++|...|-+-... +.|. .++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 34555666666666666766654432 1233333 3334455677888887777665432 1222 245
Q ss_pred HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329 158 KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP 237 (409)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 237 (409)
.-|.........-.+++.+.++ |+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5555555666666666555433 433 34445667778888887777666655543 2211 11134455556666666
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329 238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 282 (409)
++|..+-..... +......++ -..+++++|+++++.+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 666554443322 233333333 3467777777777765
No 257
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.63 E-value=3 Score=36.91 Aligned_cols=309 Identities=16% Similarity=0.143 Sum_probs=193.0
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHH--hcCCCchhHHHHHHHhhhCCCCCChhHHHHHH--HHHHhcCChHH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRL--AGARRFDYIEHLLEHQKSLPQGRREGFIMRIM--MLYGKAGMIKH 133 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~ 133 (409)
..|..+...|..-++.. .|..|-..+ ...|+-..|.++-.+..+.-. .+..-+..|+ ++-.-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~lls-sDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLLS-SDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHhcCchHH
Confidence 45666666666655443 244444333 356788888888776653322 2333333344 34556899999
Q ss_pred HHHHHHHhhhcCCCCCHHh--HHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 015329 134 AMDTFYDMHLYGCKRTVKS--LNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMV 210 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~ 210 (409)
|.+-|+.|.. .|.... ..-|.-..-+.|+.+.+.++-++...+ .|. ...+...+...|..|+|+.|+++++
T Consensus 139 Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 139 ARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999985 233222 233444445678889998887654333 333 5678899999999999999999999
Q ss_pred HHHhCC-CCCCHHH--HHHHHHHHHH---cCChhhHHHHHHHHHhcCCCCCHhhH-HHHHHHHHhcCCHhHHHHHHHHHH
Q 015329 211 EMQKLG-VKPDVIT--YTTLISAFYK---DNRPEIGNGLWNLMVCKGCFPNLATF-NVRIQHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 211 ~m~~~g-~~~~~~~--~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~ 283 (409)
.-.... +.++..- -..|+.+-.. ..+...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 876533 3334322 2233332211 2344455544444433 45554322 234568889999999999999999
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH
Q 015329 284 RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV 361 (409)
Q Consensus 284 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 361 (409)
+....|+ .+ .+..+.+.|+. +..-+++..+. .++| +......+..+-...|++..|..--+...+. .|..
T Consensus 291 K~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre 362 (531)
T COG3898 291 KAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE 362 (531)
T ss_pred hcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh
Confidence 8855554 32 23334455553 33333333322 2333 5566777888888899998887766654443 6888
Q ss_pred HHHHHHHHHHHh-CCChHHHHHHHHHHHhc
Q 015329 362 DTISALLEGLKK-NNQPCKANTIMALVQRR 390 (409)
Q Consensus 362 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 390 (409)
..|..|.+.-.- .|+-.++...+.+..+.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888888766554 49999999998887654
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.61 E-value=0.17 Score=29.28 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 015329 117 FIMRIMMLYGKAGMIKHAMDTFYDMHLY 144 (409)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 144 (409)
.+..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666677777777777777776665
No 259
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.56 E-value=2.6 Score=35.81 Aligned_cols=64 Identities=6% Similarity=-0.019 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329 217 VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK-GCFPNLATFNVRIQHLVNKRRSWQANKLMG 280 (409)
Q Consensus 217 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 280 (409)
..++..+...+++.++..+++.+-.++|+..... +..-|...|..+|..-.+.||..-..++..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555555555556665555555555443 334455555566666666665554444444
No 260
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=1.3 Score=39.30 Aligned_cols=127 Identities=11% Similarity=0.078 Sum_probs=92.7
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhc-----CCC---------CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329 226 TLISAFYKDNRPEIGNGLWNLMVCK-----GCF---------PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE 291 (409)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 291 (409)
.-.+.+.+.|++..|..-|+..... +.. .-..++..+..+|.+.+++..|+..-...+..+ +.|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3457889999999999999886532 111 234667788889999999999999999998876 3477
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCH-hHHHHHHHHHHhC
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQ-TMIHYLCQEGDF-NLAYIMCKDSMKK 355 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~-~~a~~~~~~m~~~ 355 (409)
...--=-.+|...|+++.|+..|+.+++. .|+..... .++.+--+.... +...++|..|...
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 76666778999999999999999999987 55555444 444443343333 3446677777654
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=2.4 Score=34.89 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCC---CCCCHHHHH
Q 015329 294 YNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPNR-KIYQTMIHYLCQEGDFNLAYIMCKDSMKKN---WVPSVDTIS 365 (409)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~ 365 (409)
+..+-..+.+...+++|-..+.+-... .-.++. ..|...|-.+....++..|.+.+++-.+.+ -+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344445555566666655444332111 111222 234555555666778888888887643321 234566788
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q 015329 366 ALLEGLKKNNQPCKANTIMA 385 (409)
Q Consensus 366 ~l~~~~~~~g~~~~a~~~~~ 385 (409)
.|+.+| ..|+.+++.+++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 888877 5677787777654
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.39 E-value=0.72 Score=39.13 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444555555555555555555554443 1244555555555555555555555555443
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.26 E-value=0.7 Score=39.19 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCCHHHHH
Q 015329 291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK-----KNWVPSVDTIS 365 (409)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 365 (409)
..++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456778888899999999999999999887544 788899999999999999999999888765 47888888777
Q ss_pred HHHHH
Q 015329 366 ALLEG 370 (409)
Q Consensus 366 ~l~~~ 370 (409)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 76665
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.23 E-value=7.3 Score=39.74 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=66.5
Q ss_pred CCCHhhHHHHHH----HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 015329 253 FPNLATFNVRIQ----HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKI 328 (409)
Q Consensus 253 ~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 328 (409)
.|+...+..+.. .+.....+++|--.|+..-+ ..-.+.+|..+|++.+|..+...+....-. -..+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHH
Confidence 355555444444 44456667777666655432 124567777888888888887766533111 1112
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMAL 386 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 386 (409)
-..|+.-+...++.-+|-++..+.... |. -.+..|++...+++|.++...
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 256777788888888888888776542 11 112334444455555555443
No 265
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.15 E-value=1.3 Score=30.80 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-++.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 344444555555555666666666666666666666666666555443
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.15 E-value=6.4 Score=38.80 Aligned_cols=226 Identities=12% Similarity=0.003 Sum_probs=121.4
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCH-------HhHHHHHHH-HHccCCHHHHHHHHHhcCcc---CCCCcCHHHHHH
Q 015329 123 MLYGKAGMIKHAMDTFYDMHLYGCKRTV-------KSLNAALKV-LTESRDLKAIQAFLMEVPEK---FHIQFDIFSFNI 191 (409)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 191 (409)
.......++.+|..++.++...-..|+. ..|+.+-.. ....|+++.+.++.+..... ....+....+.+
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3455688999999999887554222222 123333222 23457777777766543322 223445667888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCCh--hhHHHHHHHHHhcC---C---CCCHhh
Q 015329 192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLI-----SAFYKDNRP--EIGNGLWNLMVCKG---C---FPNLAT 258 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~m~~~~---~---~~~~~~ 258 (409)
+..+..-.|++++|..+.....+..-.-+...+..+. ..+...|+. .+.+..|....... . .+-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 8888888999999998877766543233444443332 224445632 33333344333221 0 112234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH----HHcCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHH
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLM----QRFGIEPDEVT--YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP----NRKI 328 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~ 328 (409)
+..++.++.+ .+.+..-...- ......|-... +..|+..+...|+.++|...++++......+ +..+
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4445555544 33333222222 22222222222 2367778888999999999998887653322 2222
Q ss_pred HHHHHHHH--HHcCCHhHHHHHHHH
Q 015329 329 YQTMIHYL--CQEGDFNLAYIMCKD 351 (409)
Q Consensus 329 ~~~li~~~--~~~g~~~~a~~~~~~ 351 (409)
-...+... ...|+..++.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22233322 346777777766554
No 267
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=94.12 E-value=0.77 Score=38.44 Aligned_cols=125 Identities=10% Similarity=0.058 Sum_probs=71.1
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhcCC----CCCCccch--------HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChh
Q 015329 49 PALVKLKAERDPEKLFQLFKANAHNR----IVIENKYA--------FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREG 116 (409)
Q Consensus 49 ~~l~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~--------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (409)
..-..+.-..|+..|++..++..+.- ....+..+ ...=|.+++..+++.++..+.-+--+.+.+..+.
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk 119 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH
Confidence 33344555689999999988775431 00111111 1122677777777777777665555555555566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHH-----ccCCHHHHHHHH
Q 015329 117 FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLT-----ESRDLKAIQAFL 173 (409)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~ 173 (409)
+..-=|-.|.+.+++..+.++-.......-..+..-|..++..|. -.|.+++|+.+.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 666556667777777777777666654322223333555444443 346666666655
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.04 E-value=3.6 Score=35.45 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCChh---hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 015329 222 ITYTTLISAFYKDNRPE---IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI 298 (409)
Q Consensus 222 ~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 298 (409)
.+...++.+|...+..+ +|..+++.+.... .-.+..+..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 45667778888777665 4566666665442 223556666777777789999999999999876321 334455555
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HHHH---HHHcCC------HhHHHHHHHHHHhC-CCCCCHHH
Q 015329 299 KGF---CRSGHLDMAKKVYSAMLGRRLMPNRK-IYQT-MIHY---LCQEGD------FNLAYIMCKDSMKK-NWVPSVDT 363 (409)
Q Consensus 299 ~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~-li~~---~~~~g~------~~~a~~~~~~m~~~-~~~~~~~~ 363 (409)
..+ .. .....|...++.+....+.|... .... ++.- ..+.++ ++...+++....+. +.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 544 33 33456777777776665555553 2211 1111 112222 33444444432221 23344443
Q ss_pred HHHH-------HHHHHhCCChHHHHHHHHHHH
Q 015329 364 ISAL-------LEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 364 ~~~l-------~~~~~~~g~~~~a~~~~~~~~ 388 (409)
-.++ ...+.+.++++.|.+.++...
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3222 244667899999999998654
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.84 E-value=4.6 Score=36.05 Aligned_cols=65 Identities=9% Similarity=-0.071 Sum_probs=35.0
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
...+|..+...+.+.|.++.|...+..+...+... ++...-.-....-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666665533111 122222334444555666666666666555
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.82 E-value=4.9 Score=38.56 Aligned_cols=184 Identities=11% Similarity=-0.006 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCccCCCCcCHHHHHHHHHH-HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcC--
Q 015329 166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKA-FCEMGILDKAYLVMVEMQK-------LGVKPDVITYTTLISAFYKDN-- 235 (409)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~~-- 235 (409)
...+..+++...+...+.+-...=.....+ +....|.+.|+.+|+...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 356777775554432222111111122223 5566788999999988876 44 3334555666666643
Q ss_pred ---ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH--hcCCHHH
Q 015329 236 ---RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN-KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFC--RSGHLDM 309 (409)
Q Consensus 236 ---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~ 309 (409)
+.+.|..++....+.| .|+...+-..+.-... ..+...|.++|...-+.|.. ....+..++.... -..+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 5567888888888877 4455444333322222 24677899999998888753 2222222211111 2346788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 310 AKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 310 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
|..++.+..+.| .|-..--...+..+.. +.++.+.-.+..+.+.|
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 888888888876 3322222223333333 66666666555555554
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=3.3 Score=34.18 Aligned_cols=195 Identities=12% Similarity=-0.012 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
...|.--..+|....++++|...+.+..+. .+.+...|+ ..+.++.|.-+.++|.+.. --+..|+-....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 344666677788888888888877766531 121222222 2344556666666665531 223456666777
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcC
Q 015329 266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RLMPNRKIYQTMIHYLCQEG 340 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g 340 (409)
|..+|.++.|-..+++.-+. ...-++++|+++|.+.... ...--...+..+-..+++..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88888887777666655321 1223444555555443221 11112233555566677777
Q ss_pred CHhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHH---HhcCCCCCchhHHHHHHhh
Q 015329 341 DFNLAYIMCKDSMKK----NWVPSV-DTISALLEGLKKNNQPCKANTIMALV---QRRVPHFSSNQLSAFKSIL 406 (409)
Q Consensus 341 ~~~~a~~~~~~m~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~ 406 (409)
.+++|...+.+-... .-.++. ..|...|-.+.-..++..|.+.++.- -....+-+..+...|+.+|
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 777776655432211 111222 33555555666777899999888873 3333333455677777766
No 272
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.69 E-value=0.0015 Score=49.87 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=37.3
Q ss_pred HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 015329 228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHL 307 (409)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (409)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 3344444555555555555554443344555555555555555545555444411 112223344444555555
Q ss_pred HHHHHHHHH
Q 015329 308 DMAKKVYSA 316 (409)
Q Consensus 308 ~~a~~~~~~ 316 (409)
+++.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555544443
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.69 E-value=2.6 Score=32.75 Aligned_cols=134 Identities=8% Similarity=0.065 Sum_probs=64.9
Q ss_pred HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015329 136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL 215 (409)
Q Consensus 136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 215 (409)
+.++.+.+.+++|+...+..+++.+.+.|.+.....+++ .++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 344455566667777777777777777777666666652 2333343333333222211 222222222222221
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 216 GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 216 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012344555566666666666666554222 112223455555555555554455544443
No 274
>PRK09687 putative lyase; Provisional
Probab=93.65 E-value=4.2 Score=34.98 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=144.3
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCHH
Q 015329 147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL----DKAYLVMVEMQKLGVKPDVI 222 (409)
Q Consensus 147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~ 222 (409)
.++..+....+.++...|..+....+. .+.. .+|...-...+.++.+.|+. +++...+..+... .++..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~-~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAI-ELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHH-HHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 566666666777777777654444444 3322 22555555666777777763 4577777766433 35666
Q ss_pred HHHHHHHHHHHcCCh-----hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH
Q 015329 223 TYTTLISAFYKDNRP-----EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV 297 (409)
Q Consensus 223 ~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 297 (409)
+-...+.+++..+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+ .+|...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHH
Confidence 666666666665432 223333333332 33556666777788777764 55566655554 3455555556
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 298 IKGFCRSG-HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 298 i~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
+.++.+.+ +...+...+..+... +|..+-...+.++.+.|+ ..+...+-+.++.+ + .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence 66666543 244666666666643 477778888888888887 45666666666653 2 23467788888888
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329 377 PCKANTIMALVQRRVPHFSSNQLSAFKSILSK 408 (409)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k 408 (409)
. +|...+..+.+..+ +..+...-++++.+
T Consensus 251 ~-~a~p~L~~l~~~~~--d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 K-TLLPVLDTLLYKFD--DNEIITKAIDKLKR 279 (280)
T ss_pred H-hHHHHHHHHHhhCC--ChhHHHHHHHHHhc
Confidence 5 68888888887665 45555555665544
No 275
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=1.2 Score=38.06 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=23.5
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329 236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 282 (409)
++++++.++..=++.|+-||-.+++.+|+.+.+.+++.+|..+.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555554444444
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.53 E-value=1.6 Score=34.49 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--VITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466777788888888888888888776544332 23345566666667777777766665543
No 277
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=1.3 Score=37.70 Aligned_cols=127 Identities=15% Similarity=0.170 Sum_probs=74.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCCCHhh
Q 015329 192 VIKAFCEMGILDKAYLVMVEMQK----------LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG---CFPNLAT 258 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~~m~~----------~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~ 258 (409)
|.++|.....|+.-....-.+-. .|......+...++..-....+++.++..+-.++... ..|+...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 44555555555543333322222 2334445555555555555667777777776665432 1222222
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
..+++.+. .-++++++.++..=.+.|+-||.++++.+++.+.+.+++.+|..+...|...
T Consensus 105 -~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 105 -HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred -HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22333322 3356677777777778888888888888888888888888888777776654
No 278
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.45 E-value=0.65 Score=31.86 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 309 MAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 309 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555566666666666666666666666555433
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=4.9 Score=34.86 Aligned_cols=156 Identities=6% Similarity=-0.106 Sum_probs=107.9
Q ss_pred ccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHcCChh
Q 015329 162 ESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL-G--VKPDVITYTTLISAFYKDNRPE 238 (409)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--~~~~~~~~~~ll~~~~~~~~~~ 238 (409)
..|++.+|-..++++.++ .+.|...++..=.+|.-+|+.+.....+++.... + ++-..+.-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 445554444445466554 4567888888889999999999999999988754 2 2212333334445566789999
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329 239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF---GIEPDEVTYNLVIKGFCRSGHLDMAKKVYS 315 (409)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (409)
+|++.-++..+.+ +.|.-.-.+....+...|+..++.+++.+-... +--.-.+-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998888765 567777888888888999999999887765322 101112334444455667799999999998
Q ss_pred HHHhC
Q 015329 316 AMLGR 320 (409)
Q Consensus 316 ~m~~~ 320 (409)
.-+-.
T Consensus 272 ~ei~k 276 (491)
T KOG2610|consen 272 REIWK 276 (491)
T ss_pred HHHHH
Confidence 74443
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.35 E-value=0.23 Score=27.19 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQ 213 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~ 213 (409)
|+.|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666667777777776666643
No 281
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.33 E-value=3.7 Score=35.92 Aligned_cols=230 Identities=9% Similarity=-0.059 Sum_probs=129.1
Q ss_pred HHhcCCCchhHHHHHHHhhhCCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHH----hhhcC-CCCCHHhHHHHHHHHH
Q 015329 89 RLAGARRFDYIEHLLEHQKSLPQG-R-REGFIMRIMMLYGKAGMIKHAMDTFYD----MHLYG-CKRTVKSLNAALKVLT 161 (409)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~~-~~~~~~~~~~ll~~~~ 161 (409)
-+....+.++|+..|.+....-.. . ...++..+..+.++.|.+++++..--. ..+.. -..-...|..+.+++-
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888887766532111 1 133455677778888888777653221 11110 0111234555555655
Q ss_pred ccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHH
Q 015329 162 ESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYLVMVEMQKLG-----VKPDVITYTTLISAFYK 233 (409)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~ll~~~~~ 233 (409)
+..++.+++.+-..-..-.|..|. -...-++..++...+.++++++.|+...+.. .-....+|-.|.+.|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 555565555554333333333331 1234445667777778888888888776532 11234567788888888
Q ss_pred cCChhhHHHHHHHHHh----cCCCCCHhhHHH-----HHHHHHhcCCHhHHHHHHHHHHH----cCCCc-CHHHHHHHHH
Q 015329 234 DNRPEIGNGLWNLMVC----KGCFPNLATFNV-----RIQHLVNKRRSWQANKLMGLMQR----FGIEP-DEVTYNLVIK 299 (409)
Q Consensus 234 ~~~~~~a~~~~~~m~~----~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~li~ 299 (409)
..|+++|.-+.....+ .++..-..-|.. +.-++...|+...|.+.-++..+ .|-.+ -......+.+
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 8888888776655433 222211122222 23355667777777776666533 34222 1233455666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 015329 300 GFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~ 318 (409)
.|...|+.+.|+.-|+...
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 7778888888877777655
No 282
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.20 E-value=5.8 Score=35.21 Aligned_cols=286 Identities=12% Similarity=0.064 Sum_probs=182.5
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHH--HhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSR--LAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
..||-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|...+...-.. +..|.-..-+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllG-LRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLG-LRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHh-HHHHHHHHHhcccHHH
Confidence 346777777666655422 34555555556544 345799999999999998653321111 2234444467889999
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHH--HHHHHHHHH---hcCChhHHHHH
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFS--FNIVIKAFC---EMGILDKAYLV 208 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~---~~g~~~~a~~~ 208 (409)
|.+.-++.-... +.-...+...+...+..|+++.+.++++......-+.++..- -..|+.+-. -..+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 988888776542 233457889999999999999999999876555555555432 222332211 12345555555
Q ss_pred HHHHHhCCCCCCHHHH-HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH-cC
Q 015329 209 MVEMQKLGVKPDVITY-TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR-FG 286 (409)
Q Consensus 209 ~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~ 286 (409)
-.+..+ +.||.+-- ..-..++.+.|+..++-.+++.+-+.. |.+..+ .+..+.+.|+. +.+-++...+ ..
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCc--HHHHHHHHHHHHh
Confidence 544444 34553322 233467889999999999999999874 444433 23334455553 4443443322 12
Q ss_pred CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHHhC
Q 015329 287 IEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC-QEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 287 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~ 355 (409)
++| +....-.+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++..++-+.++.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 244 455566677777888999888876666554 3788888988887764 459999999998887764
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.13 E-value=5.6 Score=34.89 Aligned_cols=230 Identities=9% Similarity=-0.022 Sum_probs=142.3
Q ss_pred hhhhcCChHHHHHHHHHhhcCC-CCCCccchHHHHHHHHhcCCCchhHHHHHH-Hh---hhCCC-CCChhHHHHHHHHHH
Q 015329 53 KLKAERDPEKLFQLFKANAHNR-IVIENKYAFEDTVSRLAGARRFDYIEHLLE-HQ---KSLPQ-GRREGFIMRIMMLYG 126 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~---~~~~~-~~~~~~~~~l~~~~~ 126 (409)
.+...++.++|+..+.....+- .....-.+|..+..+.++.|++++++..-- +| ..... ...-..|..+.+++-
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899998888776542 112223457777888899998887665422 12 11110 011233445666666
Q ss_pred hcCChHHHHHHHHHhhhc-CCCC---CHHhHHHHHHHHHccCCHHHHHHHHHhcCccC----CCCcCHHHHHHHHHHHHh
Q 015329 127 KAGMIKHAMDTFYDMHLY-GCKR---TVKSLNAALKVLTESRDLKAIQAFLMEVPEKF----HIQFDIFSFNIVIKAFCE 198 (409)
Q Consensus 127 ~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~ 198 (409)
+..++.+++.+-..-... |..| .-....++..++...+.++.+...|+...+-. +-......|..|-..|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 666677777666554332 2222 12334557777888888899988886543321 122235678899999999
Q ss_pred cCChhHHHHHHHHHHh----CCCCCCHH-HHHHH-----HHHHHHcCChhhHHHHHHHHH----hcCCCC-CHhhHHHHH
Q 015329 199 MGILDKAYLVMVEMQK----LGVKPDVI-TYTTL-----ISAFYKDNRPEIGNGLWNLMV----CKGCFP-NLATFNVRI 263 (409)
Q Consensus 199 ~g~~~~a~~~~~~m~~----~g~~~~~~-~~~~l-----l~~~~~~~~~~~a~~~~~~m~----~~~~~~-~~~~~~~ll 263 (409)
..|+++|.-+..+..+ .++. |.. -|..+ .-++...|..-+|.+.-++.. ..|-.+ .......+.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999999887776654 3443 333 23332 235566788888877776654 344222 233445667
Q ss_pred HHHHhcCCHhHHHHHHHHHH
Q 015329 264 QHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~ 283 (409)
+.|...|+.+.|+.-|+...
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 78889999999988777653
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.08 E-value=0.36 Score=25.70 Aligned_cols=31 Identities=10% Similarity=-0.105 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.+..+...+...|++++|++.+++..+..|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666677777777777777776666554
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.89 E-value=3.6 Score=32.00 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015329 242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR 321 (409)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 321 (409)
+.++.+.+.|++|+...+..++..+.+.|++.. +..+...++-+|....-..+-.+.. ....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 444555566667777777777777777776543 3334444444554443333322221 223333333333332
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 322 LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 322 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
=...+..++..+...|++-+|.++.+..... +......++++-.+.+|...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112555666677777777777776653221 112224455666666665555555555444
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=11 Score=36.69 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=91.4
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhc
Q 015329 49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKA 128 (409)
Q Consensus 49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (409)
..+.=+.+.+.+++|++.-+.....-.-..........|..+...|++++|-...-.|... +..-|...+..+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4455677788899999888876544310013345777889999999999999888887644 445555555555555
Q ss_pred CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc--------CCC-------CcCHHHHHHHH
Q 015329 129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK--------FHI-------QFDIFSFNIVI 193 (409)
Q Consensus 129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~-------~~~~~~~~~ll 193 (409)
++...... -+....-+.+...|..++..+.. .+......+..+.... ... .-+...-..|+
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 55443322 22222222345567777776665 3333333322221110 000 11223344578
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 015329 194 KAFCEMGILDKAYLVMVEMQ 213 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~ 213 (409)
..|...+++.+|++.+-.+.
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 88888899999988877665
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.36 E-value=0.37 Score=26.33 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHH
Q 015329 330 QTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~ 351 (409)
..|...|.+.|++++|.+++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 288
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.35 E-value=6.4 Score=33.53 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=82.1
Q ss_pred HhHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 015329 272 SWQANKLMGLMQR-FGIEPDEVTYNLVIKGFCR-SG-HLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEGDFNLAYI 347 (409)
Q Consensus 272 ~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~ 347 (409)
..+|+.+|+...- ..+--|..+...+++.... .+ ....-.++.+-+... |-.++..+...++..++..+++.+-++
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555553211 1233355566666665554 11 222223333333322 455677777778888888888888888
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH-----HHhcCCCCCchhHHHHHHhhc
Q 015329 348 MCKDSMKK-NWVPSVDTISALLEGLKKNNQPCKANTIMAL-----VQRRVPHFSSNQLSAFKSILS 407 (409)
Q Consensus 348 ~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 407 (409)
+|+.-... +..-|...|..++......|+..-..++.++ +++.+.+.++..-.+|-..+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 88775554 4456777788888888888888777777765 456666666666666555543
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.28 E-value=0.52 Score=25.16 Aligned_cols=31 Identities=10% Similarity=-0.125 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
+|..+..+|...|++++|++.+++..+..|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666665543
No 290
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.06 E-value=5.7 Score=32.33 Aligned_cols=224 Identities=13% Similarity=0.029 Sum_probs=127.7
Q ss_pred CChHHHHHHHHHhhhcCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 015329 129 GMIKHAMDTFYDMHLYGCK-RTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYL 207 (409)
Q Consensus 129 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 207 (409)
+....+...+......... .....+......+...+....+...+...............+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444455555554433211 124555566666666666655555554432210112234455566666666677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHHcCChhhHHHHHHHHHhcCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 208 VMVEMQKLGVKPDVITYTTLIS-AFYKDNRPEIGNGLWNLMVCKGC--FPNLATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 208 ~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777776643332 122222222 56777777777777777754211 12233333444445667788888888887766
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 285 FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 285 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
.........+..+...+...++.+.+...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 532213566677777777778888888888877765 232 334444444444666788888777776654
No 291
>PRK11906 transcriptional regulator; Provisional
Probab=91.97 E-value=9.7 Score=34.83 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=93.5
Q ss_pred HHH--HHHHHHHHHcC-----ChhhHHHHHHHHHh-cCCCCCH-hhHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 015329 222 ITY--TTLISAFYKDN-----RPEIGNGLWNLMVC-KGCFPNL-ATFNVRIQHLVN---------KRRSWQANKLMGLMQ 283 (409)
Q Consensus 222 ~~~--~~ll~~~~~~~-----~~~~a~~~~~~m~~-~~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 283 (409)
..| ...+.+..... ..+.|+.+|.+... ..+.|+- ..|..+-.++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55565554422 33567777887772 2234443 333333332221 123445666666666
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH-
Q 015329 284 RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV- 361 (409)
Q Consensus 284 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~- 361 (409)
+.+.. |......+..+..-.|+.+.|...|++.... .|| ..+|......+.-.|+.++|.+.+++.++. .|..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~ 406 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRR 406 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchhh
Confidence 66533 7777777777777778888888888888766 343 334444444555678888888888886654 3433
Q ss_pred --HHHHHHHHHHHhCCChHHHHHHHHH
Q 015329 362 --DTISALLEGLKKNNQPCKANTIMAL 386 (409)
Q Consensus 362 --~~~~~l~~~~~~~g~~~~a~~~~~~ 386 (409)
......++.|+.. ..+.|++++-+
T Consensus 407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 3333444456554 45667766644
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.87 E-value=6.6 Score=32.73 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGR--RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
.+.+.|.+.|.+..|..-+++|.+. ...-....+-.+..+|...|-.++|...-+-
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3456677777777777777777766 1111223455566777777777777766443
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.84 E-value=0.31 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 365 SALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 365 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
-.+..++.+.|++++|.+.|+++.+..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34456666777777777777777777664
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.81 E-value=4.8 Score=30.95 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=59.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCC
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN-LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ-EGD 341 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~ 341 (409)
..-.+.++.+++..++..+.-. .|...... .-...+...|++.+|..+|+++...+ |.......|+..|.. .|+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 3445677888888888888765 34322221 12233567888999999999887663 333333344444433 333
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 015329 342 FNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT 382 (409)
Q Consensus 342 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 382 (409)
.+ =..+-+++++.+ +|..+. .++..+....+...|.+
T Consensus 94 ~~-Wr~~A~evle~~--~d~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PS-WRRYADEVLESG--ADPDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred hH-HHHHHHHHHhcC--CChHHH-HHHHHHHHhccccchhh
Confidence 22 122223344443 344333 33444545555555444
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.79 E-value=3.3 Score=32.76 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCCHHHHHH
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN--RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK---NWVPSVDTISA 366 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~ 366 (409)
..+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|......|++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455666666677777777777766666533322 233455666666666666666655544322 11111111111
Q ss_pred HH--HHHHhCCChHHHHHHHHHHH
Q 015329 367 LL--EGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 367 l~--~~~~~~g~~~~a~~~~~~~~ 388 (409)
.. -.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 12334566777766665544
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.60 E-value=5.1 Score=30.82 Aligned_cols=72 Identities=15% Similarity=-0.039 Sum_probs=42.6
Q ss_pred HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329 88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE 162 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 162 (409)
..-.+.++.+++..++..+....+.. ..+-..-...+.+.|+|.+|..+|+++.+.+ |.......|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~-~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEF-PELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 34456678888888888777654432 2222223445667888888888888876542 443434444444443
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.10 E-value=3.1 Score=33.30 Aligned_cols=72 Identities=8% Similarity=-0.012 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329 274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR---RLMPNRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~ 346 (409)
.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34444444444443323333333333333 34555555555555443 22445555555555555555555543
No 298
>PRK11906 transcriptional regulator; Provisional
Probab=91.05 E-value=12 Score=34.22 Aligned_cols=79 Identities=6% Similarity=-0.102 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
+|.+.-+...+.+ +-|......+..+..-.++.+.+...|++....+.. ...+|........-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3334444444433 334444444444444444555555555555444211 12222222222333455555555555544
Q ss_pred h
Q 015329 319 G 319 (409)
Q Consensus 319 ~ 319 (409)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
No 299
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.79 E-value=0.43 Score=27.53 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=14.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 367 LLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 367 l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
+..+|...|+.+.|.++++++...+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4455666666666666666665443
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.52 E-value=6.9 Score=30.49 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=36.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 015329 302 CRSGHLDMAKKVYSAMLGRRLMPNRK-IYQTM--IHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPC 378 (409)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 378 (409)
...|+...|...|+++-.....|-.. -...| ...+...|.++....-.+-+-..+-+.-...-..|.-+-.+.|++.
T Consensus 105 a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 105 AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 34455555555555554442222221 11111 1122344555555444444333332222233344444444555555
Q ss_pred HHHHHHHHHHh
Q 015329 379 KANTIMALVQR 389 (409)
Q Consensus 379 ~a~~~~~~~~~ 389 (409)
.|.+.|..+..
T Consensus 185 ~A~~~F~qia~ 195 (221)
T COG4649 185 KAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHc
Confidence 55555555543
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.21 E-value=15 Score=33.74 Aligned_cols=123 Identities=15% Similarity=0.038 Sum_probs=81.8
Q ss_pred HHHHhcCChhHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329 194 KAFCEMGILDKA-YLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS 272 (409)
Q Consensus 194 ~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 272 (409)
.--...|++-.| .+++..+......|+..-..+.| +...|+++.+...+...... +-....+..+++....+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 334455666655 44555555554455555444443 45678888888887766543 334567778888888889999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
+.|..+-.-|....++ +..........-...|-++++...|++....
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9999888888877766 4444444444445567788888888887654
No 302
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.96 E-value=6 Score=29.91 Aligned_cols=80 Identities=8% Similarity=0.121 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGV-----KPDVITYTTLISAFYKDNR-PEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
.|.++......+++...+.+++.+..... ..+...|++++.+..+..- ---+..+|+.|++.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56666666666666666666666532100 1233445555555543333 22344555555555555555555555
Q ss_pred HHHHHh
Q 015329 263 IQHLVN 268 (409)
Q Consensus 263 l~~~~~ 268 (409)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555444
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.53 E-value=0.51 Score=25.42 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHH
Q 015329 358 VPSVDTISALLEGLKKNNQPCKAN 381 (409)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~a~ 381 (409)
+-+...|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555555555555553
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.39 E-value=1.1 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777766653
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.38 E-value=3.8 Score=28.28 Aligned_cols=46 Identities=9% Similarity=0.244 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
++.+-+..+....+.|++....+.+++|.+.+++..|.++|+..+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666666666666666666666665553
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.17 E-value=5.9 Score=27.69 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCC
Q 015329 133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH 181 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 181 (409)
+..+-++.+...++.|++.+..+.+++|-+.+++..|.++++.+..+.|
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 4444555555555566666666666666666666666666654444433
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.07 E-value=43 Score=37.49 Aligned_cols=147 Identities=8% Similarity=-0.012 Sum_probs=95.9
Q ss_pred hhcCChHHHHHHHHHhhcCCCCC-CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329 55 KAERDPEKLFQLFKANAHNRIVI-ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH 133 (409)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (409)
.+.+.+.+|+-.++.-.....-. ....-|..+...|+.-++.|....+..... .+..++. -|......|+++.
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEASGNWAD 1467 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHhhccHHH
Confidence 36789999999999842111001 122334444558999999998888876421 1334444 4455678999999
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHH-HHHHHHHhcCChhHHHHHHH
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFN-IVIKAFCEMGILDKAYLVMV 210 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~ 210 (409)
|...|+.+.+.+ ++...+++-++......+.++.+....+-.... ..+....++ .=+.+--+.++||.......
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999876 555778888888888888887777766433222 122233333 33455578888888777665
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.00 E-value=10 Score=30.23 Aligned_cols=131 Identities=9% Similarity=0.035 Sum_probs=80.0
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---
Q 015329 256 LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN--LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQ--- 330 (409)
Q Consensus 256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--- 330 (409)
...|..++.... .+.+ +.......+......-...++. .+...+...|++++|...++..... |....+.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 445555555543 3333 4444555555443221222222 3345678889999999988877654 2222333
Q ss_pred --HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 331 --TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 331 --~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.|.+.....|.+|+|+..++...+.++ .......-.+.+...|+.++|+.-+++..+.+..
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 345567788999999998886554432 2222333447888999999999999998888633
No 309
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.47 E-value=19 Score=32.79 Aligned_cols=351 Identities=13% Similarity=0.098 Sum_probs=175.5
Q ss_pred CCCChHHHHh--hhhcCChHHHHHHHHHhhcC--CCCC-----------CccchHHHHHHHHhcCCCchhHHHHHHHhhh
Q 015329 44 KPLEPPALVK--LKAERDPEKLFQLFKANAHN--RIVI-----------ENKYAFEDTVSRLAGARRFDYIEHLLEHQKS 108 (409)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~~~a~~~~~~~~~~--~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 108 (409)
+..+..++.. ..+.++..+|++.+..-..+ +.-+ +|-..=+..+..++..|++.++..+++.+..
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 4455555554 34678888888888766544 1011 1111123446778889999999988887764
Q ss_pred CC----CCCChhHHHHHHHHHHhc--------CCh-------HHHHHHHHHhhhcC------CCCCHHhHHHHHHHHHcc
Q 015329 109 LP----QGRREGFIMRIMMLYGKA--------GMI-------KHAMDTFYDMHLYG------CKRTVKSLNAALKVLTES 163 (409)
Q Consensus 109 ~~----~~~~~~~~~~l~~~~~~~--------~~~-------~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~ 163 (409)
.- ..-+...|+.++-.+++. ... +-+.-...+|.... +-|.......++....-.
T Consensus 157 ~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 157 RLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred HHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 32 235667777644333321 111 11222222222111 123223233333322211
Q ss_pred C--CHHHHHHHHHhcCccCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCC
Q 015329 164 R--DLKAIQAFLMEVPEKFHIQFDIF-SFNIVIKAFCEMGILDKAYLVMVEMQKLGVK----PDVITYTTLISAFYKDNR 236 (409)
Q Consensus 164 ~--~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~ 236 (409)
. ...-..+++... ++.-+.|+-. ....+...+.+ +.+++..+-+.+....+. -=..+|..++....+.++
T Consensus 237 p~e~l~~~mq~l~~W-e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 237 PKERLPPLMQILENW-ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CHhhccHHHHHHHHH-HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 112223333222 3334455422 23344444443 344444443333322111 124567777777777787
Q ss_pred hhhHHHHHHHHHhcCCCCCH---------------------hhHHH------------------------HHHH---HHh
Q 015329 237 PEIGNGLWNLMVCKGCFPNL---------------------ATFNV------------------------RIQH---LVN 268 (409)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~---------------------~~~~~------------------------ll~~---~~~ 268 (409)
-..|-+.+..+.-. .|+. ..++. ++.+ +=+
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 77777777666532 1211 11111 0000 011
Q ss_pred cCC-HhHHHHHHHHHHHcCCCcCHHHHHHH----HHHHHh---cCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHH-
Q 015329 269 KRR-SWQANKLMGLMQRFGIEPDEVTYNLV----IKGFCR---SGHLDMAKKVYSAMLGRRLMP----NRKIYQTMIHY- 335 (409)
Q Consensus 269 ~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l----i~~~~~---~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~- 335 (409)
.|. -++|+.+++.+.+-. .-|...-|.+ =.+|.+ ...+..-..+-+-+.+.|+.| +...-|.+.++
T Consensus 392 ~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred cCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 222 455666666655432 1122222222 122322 223344444444445557665 33445555544
Q ss_pred -HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHH
Q 015329 336 -LCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAF 402 (409)
Q Consensus 336 -~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 402 (409)
+...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+--+..-.+..+..++
T Consensus 471 yLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl 536 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKAL 536 (549)
T ss_pred HHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 4568999998876655554 5799999999999999999999999999877543322333343333
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.47 E-value=24 Score=33.91 Aligned_cols=49 Identities=6% Similarity=-0.047 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhcCCCCCCccchHHHHHHH-HhcCCCchhHHHHHHHhhh
Q 015329 60 PEKLFQLFKANAHNRIVIENKYAFEDTVSR-LAGARRFDYIEHLLEHQKS 108 (409)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~ 108 (409)
...|++.++.....+.+.+-...-...... .....+.+.|..+++.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 455777777766665221111111111112 3344566667666666644
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.36 E-value=1.4 Score=24.59 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 328 IYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555444
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.99 E-value=23 Score=32.96 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
...-+++..+..+..+.-+..+-.+|...| -+-..|-.++..|... ..++-..+|+++.+..+ |......-+..+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 344445555555555555555555555443 1344455555555444 44445555555554422 222222222222
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 015329 267 VNKRRSWQANKLMGLMQRFGIEP-----DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEG 340 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g 340 (409)
...++.+.+..+|.++...-++- -...|.-+...- ..+.+....+..++.+. |...-...+.-+-.-|....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 22344555555555443321110 011222222211 23344444444444333 33333333444444455555
Q ss_pred CHhHHHHHHHHHHhC
Q 015329 341 DFNLAYIMCKDSMKK 355 (409)
Q Consensus 341 ~~~~a~~~~~~m~~~ 355 (409)
++++|++++...++.
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 555555555544443
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.91 E-value=5.2 Score=31.95 Aligned_cols=92 Identities=10% Similarity=-0.004 Sum_probs=59.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEPD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE 339 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 339 (409)
.-+.+.|++++|..-|...++.-.... ...|..-..++.+.+.++.|++--...++.+.. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 356678888888888888876532211 233444455667778888888777777765432 222223334567777
Q ss_pred CCHhHHHHHHHHHHhCC
Q 015329 340 GDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 340 g~~~~a~~~~~~m~~~~ 356 (409)
..+++|++=|+.+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888877753
No 314
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.89 E-value=3.4 Score=30.07 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=18.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 314 YSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 314 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
+..+..-++.|++......+++|.+.+++..|.++|+-
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~ 109 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEA 109 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33333334445555555555555555555555555444
No 315
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.88 E-value=0.8 Score=24.65 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHcCCHhHH
Q 015329 325 NRKIYQTMIHYLCQEGDFNLA 345 (409)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a 345 (409)
|...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444455555555555555544
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.85 E-value=1.4 Score=23.36 Aligned_cols=30 Identities=10% Similarity=-0.105 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
+|..+...|...|+.++|.+.|++..+..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555555666666666666665554443
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.22 E-value=2.2 Score=36.95 Aligned_cols=78 Identities=6% Similarity=-0.050 Sum_probs=48.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
.-|.+.|.+++|++.|...... .| |.+++..-..+|.+...+..|..=-...... -...+.+|.+.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHH
Confidence 4678888888888888776654 44 6777777777888887777666544444432 12334555555444
Q ss_pred hHHHHHHHH
Q 015329 343 NLAYIMCKD 351 (409)
Q Consensus 343 ~~a~~~~~~ 351 (409)
.+++....+
T Consensus 175 R~~Lg~~~E 183 (536)
T KOG4648|consen 175 RESLGNNME 183 (536)
T ss_pred HHHHhhHHH
Confidence 444444333
No 318
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.15 E-value=2.2 Score=22.61 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666655
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.94 E-value=13 Score=35.16 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=45.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 015329 198 EMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANK 277 (409)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 277 (409)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+..+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3455555544443321 344455555555555555555555544332 3344444555555544444
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329 278 LMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYS 315 (409)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (409)
+-....+.|.. |....+|...|+++++.+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444444321 222333444555555555544
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.59 E-value=23 Score=31.55 Aligned_cols=67 Identities=9% Similarity=-0.080 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 219 PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP---NLATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
....+|..+...+.+.|.++.|...+..+...+... ++...-.-....-..|+..+|+..++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356678888999999999999999999998754222 3444445566677789999999999888773
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.16 E-value=0.62 Score=35.36 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=19.8
Q ss_pred HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 015329 88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF 138 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (409)
..+.+.+..+.....++.+...+...+..+.+.++..|++.+..+...+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333334444444444444443333333444444444444444333333333
No 322
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.14 E-value=11 Score=32.75 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=27.6
Q ss_pred HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 159 VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
+.-+.|+..+|.+.++++++...+..-......++.++....-+.++..++.+..+
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445666666666655555433221122344555555555555555555444443
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.12 E-value=11 Score=30.22 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=61.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCh
Q 015329 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK---NWVPSVDTISALLEGLKKNNQP 377 (409)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~ 377 (409)
+.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+.++. +-.+|+..+..|...+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455554 577888888887766657776666666665 67889999998887764 3478899999999999999999
Q ss_pred HHHH
Q 015329 378 CKAN 381 (409)
Q Consensus 378 ~~a~ 381 (409)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.63 E-value=2.9 Score=21.99 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777776665
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.99 E-value=17 Score=27.67 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=7.4
Q ss_pred hcCChhHHHHHHHHHHh
Q 015329 198 EMGILDKAYLVMVEMQK 214 (409)
Q Consensus 198 ~~g~~~~a~~~~~~m~~ 214 (409)
..|+|++|.++|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 34444444444444443
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.78 E-value=18 Score=34.20 Aligned_cols=99 Identities=10% Similarity=-0.037 Sum_probs=60.1
Q ss_pred HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329 232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (409)
.+.|+++.|.++..+. .+..-|..|-.+....+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3456666665544322 2566677777777777777777777766542 445666666667666555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
.+-....+.|.. |...-+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 555555554432 3334456667888877777654
No 327
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.11 E-value=56 Score=33.11 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=19.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhcCc
Q 015329 153 LNAALKVLTESRDLKAIQAFLMEVPE 178 (409)
Q Consensus 153 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 178 (409)
|..|+..|...|..++|.+++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66777777777777777777766654
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.96 E-value=4.3 Score=21.35 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666666666666666554
No 329
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.90 E-value=25 Score=29.95 Aligned_cols=88 Identities=9% Similarity=0.100 Sum_probs=52.1
Q ss_pred HHHHHHHccCCHHHHHHHHHh-cCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329 155 AALKVLTESRDLKAIQAFLME-VPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK 233 (409)
Q Consensus 155 ~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 233 (409)
.=|+++++.+++.++..+.-+ ...-..++|.+ ...-|-.|.+.|++..+.++-....+..-.-+...|..+.+.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347778888888555544322 11122344443 334444577888888888877777654323344457777766655
Q ss_pred -----cCChhhHHHHH
Q 015329 234 -----DNRPEIGNGLW 244 (409)
Q Consensus 234 -----~~~~~~a~~~~ 244 (409)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 57777777665
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.89 E-value=19 Score=27.42 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=33.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015329 267 VNKRRSWQANKLMGLMQRFGIE-PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR 321 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 321 (409)
...++++++..++..|.-...+ +...++-.. .+...|++++|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 3467778888888777655222 123333332 3466788888888888877763
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.86 E-value=13 Score=30.30 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK--NWVPSVDTISALLEG 370 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~ 370 (409)
|.+..++.+.+.+.+.+++...+.-.+.... |..+-..+++.++-.|++++|..-++-.-.. ...+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455667778888999999998887776433 5666778899999999999998776654332 234555677776654
No 332
>PRK09687 putative lyase; Provisional
Probab=80.92 E-value=36 Score=29.38 Aligned_cols=136 Identities=15% Similarity=0.042 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 015329 220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR-RSWQANKLMGLMQRFGIEPDEVTYNLVI 298 (409)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li 298 (409)
+..+-...+.++++.++ +++...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555655554 3444444444432 23334444444444432 12344444444442 33555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 299 KGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL 371 (409)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 371 (409)
.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|...+..+.+. .+|..+-...+.+|
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 666666663 4444444444432 2 233556666666663 566666666653 34655555555544
No 333
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.88 E-value=46 Score=30.58 Aligned_cols=76 Identities=18% Similarity=0.082 Sum_probs=35.2
Q ss_pred HhcCCCchhHHHHHHHhhhCCCCCChh--HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHH--hHHHHHHHHHccCC
Q 015329 90 LAGARRFDYIEHLLEHQKSLPQGRREG--FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVK--SLNAALKVLTESRD 165 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~ 165 (409)
.+..|+.+-+..+++. |..++.. .-.+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll~~----g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLLDI----GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3455666555555543 3222211 1123444445566654 333344445444322 11234445556677
Q ss_pred HHHHHHHH
Q 015329 166 LKAIQAFL 173 (409)
Q Consensus 166 ~~~a~~~~ 173 (409)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 76666666
No 334
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.55 E-value=23 Score=26.88 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCC-----CcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 260 NVRIQHLVNKRRSWQANKLMGLMQRFGI-----EPDEVTYNLVIKGFCRSGH-LDMAKKVYSAMLGRRLMPNRKIYQTMI 333 (409)
Q Consensus 260 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li 333 (409)
++++......+++...+.+++.+..... ..+...|.+++.+.++..- --.+..+|.-|.+.+.+++..-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444445555555555544421100 1133344555555443333 223344444444444455555555555
Q ss_pred HHHHH
Q 015329 334 HYLCQ 338 (409)
Q Consensus 334 ~~~~~ 338 (409)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55443
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.70 E-value=54 Score=30.67 Aligned_cols=165 Identities=9% Similarity=0.035 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
+.....+++..++.+..+.-...+-.+|...| .+-..|-.++.+|... ..+....+++++.+- .+. |+..-..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~-dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY-DFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cch-hHHHHHHHH
Confidence 44455556666666666666666666666654 4455566666666666 333344444332221 111 222223333
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCChhhHHHHHHHHHh-cCCCCCHhhHHHHHHHHH
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVK-----PDVITYTTLISAFYKDNRPEIGNGLWNLMVC-KGCFPNLATFNVRIQHLV 267 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~ 267 (409)
..| ..++.+.+...|.+....-+. .-...|.-+.... -.+.+..+.+...+.. .|...-...+.-+-.-|.
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 333 336666666666665543211 0011233333211 2334444444444433 222223334444445555
Q ss_pred hcCCHhHHHHHHHHHHHcC
Q 015329 268 NKRRSWQANKLMGLMQRFG 286 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~ 286 (409)
...++++|++++..+.+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5666666666666555543
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.45 E-value=5.3 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.426 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 33444444444445444444443
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.39 E-value=3.7 Score=20.32 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=8.6
Q ss_pred HHHHHHhcCChHHHHHHH
Q 015329 121 IMMLYGKAGMIKHAMDTF 138 (409)
Q Consensus 121 l~~~~~~~~~~~~a~~~~ 138 (409)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444555555554444
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.09 E-value=5 Score=19.97 Aligned_cols=26 Identities=12% Similarity=-0.175 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 365 SALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 365 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
..+...+...|+++.|...++...+.
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33444444455555555555444433
No 339
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.79 E-value=35 Score=27.95 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=33.3
Q ss_pred CcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 183 QFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 183 ~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
.|+ +..||.+.-.+...|+++.|.+.|+...+....-+-...|--|. +.--|++..|.+=+...-+
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 444 34466666666666666666666666665433322222222222 2234566666554444443
No 340
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.35 E-value=6.3 Score=33.75 Aligned_cols=45 Identities=31% Similarity=0.352 Sum_probs=35.1
Q ss_pred CCCcCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 015329 181 HIQFDIFS-FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYT 225 (409)
Q Consensus 181 ~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 225 (409)
.+.||..+ |+..|+...+.||+++|+.++++..+.|..--..+|-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34566655 7789999999999999999999999998774444443
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.74 E-value=74 Score=31.18 Aligned_cols=86 Identities=9% Similarity=-0.019 Sum_probs=32.9
Q ss_pred HHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHh---cC
Q 015329 230 AFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-EPDEVTYNLVIKGFCR---SG 305 (409)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~---~g 305 (409)
.+.-.|+++.|.+.+-. ..+...+.+.+.+.+..|.-.+-.+... ..+..... .|...-+..||..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 33445666666666655 1222344454444444333222111111 11111100 1111445667777765 35
Q ss_pred CHHHHHHHHHHHHhC
Q 015329 306 HLDMAKKVYSAMLGR 320 (409)
Q Consensus 306 ~~~~a~~~~~~m~~~ 320 (409)
+..+|.++|--+...
T Consensus 342 d~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 342 DPREALQYLYLICLF 356 (613)
T ss_dssp -HHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHHHc
Confidence 677777777666554
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.52 E-value=7.4 Score=23.54 Aligned_cols=29 Identities=21% Similarity=0.008 Sum_probs=17.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 366 ALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 366 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
.+.-++.+.|++++|.+..+.+.+..|.+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 34456666677777777766666666655
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.28 E-value=46 Score=28.59 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALV 387 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 387 (409)
++.....|..+|.+.+|.++.+..+..+ +.+...+..++..+...|+--.|.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445566677777777777776666554 555666666777777777755555555544
No 344
>PF13934 ELYS: Nuclear pore complex assembly
Probab=77.16 E-value=32 Score=28.51 Aligned_cols=123 Identities=14% Similarity=0.024 Sum_probs=0.0
Q ss_pred CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329 78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL 157 (409)
Q Consensus 78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 157 (409)
|....-..-.-.+...+++++|.+.+ ..+...+.+...++.++...|+.+.|+.+++...- ..+...-..+.
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~ 147 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLY 147 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHH
Q ss_pred HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 015329 158 KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLV 208 (409)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 208 (409)
.....++.+.+|..+-+......+-..-...+..++..+.+.+..++-..+
T Consensus 148 ~~~La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 148 FVALANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.10 E-value=37 Score=27.39 Aligned_cols=90 Identities=11% Similarity=-0.045 Sum_probs=41.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKPDV----ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
-+.++|++++|..-|.+.+........ ..|..-.-++.+.+.++.|+.--...++.+ +........-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 345566666666666666554322111 122222334445555555555444444432 111112222233555555
Q ss_pred CHhHHHHHHHHHHHc
Q 015329 271 RSWQANKLMGLMQRF 285 (409)
Q Consensus 271 ~~~~a~~~~~~~~~~ 285 (409)
.++.|+.=|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 566666666555554
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.98 E-value=28 Score=25.98 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 325 NRKIYQTMIHYLCQEGD---FNLAYIMCKDSMKKNWV-PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 325 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
+..+--.+..++.++.+ +.+.+.+++++.+..-+ -.......|.-++.+.++++.++++++.+.+..|++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 33333344444444433 33444555555542111 112233334445555566666666665555555443
No 347
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.93 E-value=40 Score=27.63 Aligned_cols=164 Identities=13% Similarity=-0.015 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
-+.+|+-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|+++.|.+=+.+.-....-.|-...|--+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 467888888888899999999999999887642222222333333 3345666544443323222322233233333222
Q ss_pred HHHHhcCChhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC------CCCHhhHHHHHHHH
Q 015329 194 KAFCEMGILDKAYLVM-VEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC------FPNLATFNVRIQHL 266 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~-~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~~~ll~~~ 266 (409)
-+.-++.+|..-+ ++... .|..-|...|-.+.- |+.. ...+++.+....- ..=+.||--+..-+
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 2233555665433 33332 244444443333221 2221 1222333322110 11246788888889
Q ss_pred HhcCCHhHHHHHHHHHHHcCC
Q 015329 267 VNKRRSWQANKLMGLMQRFGI 287 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~ 287 (409)
...|+.++|..+|+-....++
T Consensus 248 l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccccHHHHHHHHHHHHHHhH
Confidence 999999999999988876543
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.91 E-value=37 Score=27.25 Aligned_cols=93 Identities=9% Similarity=0.017 Sum_probs=46.4
Q ss_pred HHHHHccCCHHHHHHHHHhcCccCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329 157 LKVLTESRDLKAIQAFLMEVPEKFH-IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN 235 (409)
Q Consensus 157 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 235 (409)
...++.+++++.|...++....... -.....+--.|.+.....|.+|.|+..++.....+.. ......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 3445566666666666643322200 0001111222344555666666666666665544321 222334445566666
Q ss_pred ChhhHHHHHHHHHhcC
Q 015329 236 RPEIGNGLWNLMVCKG 251 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~ 251 (409)
+-++|..-|....+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 6666666666666553
No 349
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.84 E-value=15 Score=29.57 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 358 VPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
.|++.+|..++.++...|+.++|.+...++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 57777777777777777777777777777776665
No 350
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.30 E-value=84 Score=31.08 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=98.1
Q ss_pred HHHHhcCCCchhHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC
Q 015329 87 VSRLAGARRFDYIEHLLEHQKSLPQGR-REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD 165 (409)
Q Consensus 87 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 165 (409)
|+.+.+.+.+++|+.+.+......... ...+....|..+...|++++|-...-.|. .-+..-|..-+..+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccccc
Confidence 677788899999999888766443321 34566778888999999999999999887 3466677777777777777
Q ss_pred HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----------------hCCCCCCHHHHHHHH
Q 015329 166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ-----------------KLGVKPDVITYTTLI 228 (409)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----------------~~g~~~~~~~~~~ll 228 (409)
......+. -...-..+...|..++..|.. .+...-.++..+.. +..-. +...-..|+
T Consensus 439 l~~Ia~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIAPYL----PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVLA 512 (846)
T ss_pred cchhhccC----CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHHH
Confidence 65554443 222223456678888888776 22222222111110 00001 222334578
Q ss_pred HHHHHcCChhhHHHHHHHHH
Q 015329 229 SAFYKDNRPEIGNGLWNLMV 248 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~ 248 (409)
..|...+++..|+.++-...
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 88889999999988776554
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.40 E-value=24 Score=30.91 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=43.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW 273 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 273 (409)
-|.+.|.+++|++.|...... .| +.+++..-..+|.+.+.+..|+.=-......+ ..-...|+.-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 466666777777766665543 23 56666666666666666655554433333321 011222333333333344444
Q ss_pred HHHHHHHHHHH
Q 015329 274 QANKLMGLMQR 284 (409)
Q Consensus 274 ~a~~~~~~~~~ 284 (409)
+|.+=++..+.
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 44444444443
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.22 E-value=70 Score=29.65 Aligned_cols=88 Identities=8% Similarity=-0.007 Sum_probs=44.1
Q ss_pred HHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329 160 LTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI 239 (409)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 239 (409)
+...|+++.+...+...... +.....+...+++...+.|+++.|...-.-|....++ +........-..-..|-+++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 34455555555555332111 1223445555666666666666666666655555444 33333333333344455666
Q ss_pred HHHHHHHHHhc
Q 015329 240 GNGLWNLMVCK 250 (409)
Q Consensus 240 a~~~~~~m~~~ 250 (409)
+...|+++...
T Consensus 410 ~~~~wk~~~~~ 420 (831)
T PRK15180 410 SYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHhcc
Confidence 66666665543
No 353
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.01 E-value=45 Score=27.35 Aligned_cols=78 Identities=14% Similarity=0.051 Sum_probs=51.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCCCHHhHHHHHHH
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG--CKRTVKSLNAALKV 159 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~ 159 (409)
|....++.+.+.+++++++...++-.+..+. +...-..+++.++-.|+|++|..-++..-... ..+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455667778888888888887766655433 45555567888888888888887776654432 13344566666654
Q ss_pred H
Q 015329 160 L 160 (409)
Q Consensus 160 ~ 160 (409)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 354
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.00 E-value=15 Score=21.68 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=21.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 196 FCEMGILDKAYLVMVEMQKLGVKPDVITYTTLIS 229 (409)
Q Consensus 196 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 229 (409)
..+.|-++++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4455666666677777766776666666665554
No 355
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.81 E-value=8.2 Score=24.27 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
-.-.++.+|...|++++|.++++.+.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344455555555555555554443
No 356
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.04 E-value=14 Score=21.73 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=22.2
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329 125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK 158 (409)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 158 (409)
..+.|-+.++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466666677777777777776666666665554
No 357
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=73.53 E-value=64 Score=28.39 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLMQRF---GIEPDEVTY--NLVIKGFCRSGHLDMAKKVYSAMLG-----RRLMPNRK 327 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 327 (409)
...++...-+.+|.++|.++++++.+. --.|+.+.| ..+...+...|+..++.+++++..+ .++.|++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 334455555666777777777777442 124455444 3444555667777777777776665 35665443
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.49 E-value=59 Score=27.99 Aligned_cols=159 Identities=12% Similarity=0.045 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHH-------h-c------------------CCCCC
Q 015329 202 LDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMV-------C-K------------------GCFPN 255 (409)
Q Consensus 202 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-------~-~------------------~~~~~ 255 (409)
-.+|+++|.-+.++.-+ .++-..++.++....+..+|...+.... . . +..-|
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 36899999999875322 3455667788888888888887765432 1 0 12335
Q ss_pred HhhHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCcCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015329 256 LATFNVRIQHLVN-KRRSWQANKLMGLMQRFGIEPDE-----------------VTYNLVIKGFCRSGHLDMAKKVYSAM 317 (409)
Q Consensus 256 ~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~~-----------------~~~~~li~~~~~~g~~~~a~~~~~~m 317 (409)
..-|-..+..... ...++++.++....+. +.-|+. .+++.....|..+|.+.+|.++-+..
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5556555554433 2335555555555432 222221 12355567788999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCCHHHH
Q 015329 318 LGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK-----KNWVPSVDTI 364 (409)
Q Consensus 318 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 364 (409)
.... +.+...+-.++..+...|+--.+.+-++.+.+ -|+..+...+
T Consensus 306 ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 306 LTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred hhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 8764 23677788899999999998888887777643 2555555444
No 359
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.48 E-value=63 Score=28.29 Aligned_cols=97 Identities=7% Similarity=-0.007 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH-HHHHcCCHhHHHHHHHHHHhCCCCCCH----HH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPNRKIYQTMIH-YLCQEGDFNLAYIMCKDSMKKNWVPSV----DT 363 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~ 363 (409)
.+-.....||+.|+.+.|++.++...+. |.+.|+..+..=+. .|....-+.+-++..+.+.++|-..+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444555666777777666666554333 55555544332222 122222234444444555555433222 23
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 364 ISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
|..+. |....++.+|-.+|-+....+
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 33332 223345666666665554433
No 360
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=72.89 E-value=47 Score=26.56 Aligned_cols=57 Identities=5% Similarity=-0.057 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 015329 330 QTMIHYLCQEGDFNLAYIMCKDSMKKN--------------WVPSVDTISALLEGLKKNNQPCKANTIMAL 386 (409)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 386 (409)
-+++..|.+..++.++.++++.|.+.. ..+--...+.....+.++|..|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345667778888888888888876532 223445677888999999999999999984
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.35 E-value=16 Score=26.69 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=24.9
Q ss_pred HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc
Q 015329 134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK 179 (409)
Q Consensus 134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 179 (409)
..+.++.+...++.|++.+....++++-+.+++..|.++|+.+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444445555566666666666666666665565555444333
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.10 E-value=18 Score=24.00 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=8.2
Q ss_pred HHHHHHHHHcCCHhHHHH
Q 015329 330 QTMIHYLCQEGDFNLAYI 347 (409)
Q Consensus 330 ~~li~~~~~~g~~~~a~~ 347 (409)
..++.+|+..|++.++++
T Consensus 47 G~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 363
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.93 E-value=76 Score=28.60 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=28.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHH
Q 015329 299 KGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC-QEGDFNLAYIMCKDS 352 (409)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m 352 (409)
....+.|.+..|.++-+-+...+..-|+.....+|+.|+ ++++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 344555666666666665555544434444455555553 455555555555543
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.86 E-value=1e+02 Score=30.15 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=104.5
Q ss_pred HHHHHHHhhcCCCCCCccch--HHHHHHHHh-cCCCchhHHHHHHHhhhCCCCCC--h-hH--HHHHHHHHHhcCChHHH
Q 015329 63 LFQLFKANAHNRIVIENKYA--FEDTVSRLA-GARRFDYIEHLLEHQKSLPQGRR--E-GF--IMRIMMLYGKAGMIKHA 134 (409)
Q Consensus 63 a~~~~~~~~~~~~~~~~~~~--~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~--~-~~--~~~l~~~~~~~~~~~~a 134 (409)
|+..++.+.+....+|...+ +-.+...+. ...++++|+..+++........+ . .+ ...++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 67777777754434554433 444555555 67889999999997754332211 1 11 124566676666665 8
Q ss_pred HHHHHHhhhcC----CCCCHHhHHHH-HHHHHccCCHHHHHHHHHhcCccCC--CCcCHHHHHHHHHHHH--hcCChhHH
Q 015329 135 MDTFYDMHLYG----CKRTVKSLNAA-LKVLTESRDLKAIQAFLMEVPEKFH--IQFDIFSFNIVIKAFC--EMGILDKA 205 (409)
Q Consensus 135 ~~~~~~m~~~~----~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~--~~g~~~~a 205 (409)
...+++..+.- ..+-...|..+ +..+...++...|...++....... ..|-..++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 88888865432 11222333333 2233334788888888766544432 2334445555555444 44556777
Q ss_pred HHHHHHHHhCC---------CCCCHHHHHHHHHHHHH--cCChhhHHHHHHHH
Q 015329 206 YLVMVEMQKLG---------VKPDVITYTTLISAFYK--DNRPEIGNGLWNLM 247 (409)
Q Consensus 206 ~~~~~~m~~~g---------~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m 247 (409)
.+.++++.... -.|-..+|..+++.++. .|+++.+...++++
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777764321 13356677777776654 56666776665554
No 365
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.82 E-value=38 Score=25.03 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhcCCCCC-HHhHHHHHHHHHccCCHHHHHHHH
Q 015329 133 HAMDTFYDMHLYGCKRT-VKSLNAALKVLTESRDLKAIQAFL 173 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 173 (409)
.+.++|..|...|+-.. ..-|......+...|+++.|..++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665554332 334555555566666666666665
No 366
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.52 E-value=1e+02 Score=29.89 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
+...-..++..|.+.|-.+.|.++.+.+-.+-+ ...-|..-+..+.+.|+...+..+.+.+.+..
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~ 468 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEY 468 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 555566677777777777777777665543321 22345555666777777777766666665433
No 367
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.34 E-value=1.1e+02 Score=30.20 Aligned_cols=313 Identities=10% Similarity=-0.003 Sum_probs=155.7
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCh
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGR-REGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 131 (409)
...+.|+...+.++...+.... . ..-..|..+...+ ....+++....++.- +..| ....-...+..+.+.+++
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~p-L-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYP-L-YPYLEYRQLTQDL-MNQPAVQVTNFIRAN---PTLPPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCC-c-HhHHHHHHHHhcc-ccCCHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHccCH
Confidence 3556778888888777764322 1 1112233332222 122455555554443 3222 233444556666778888
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHH--HHH
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY--LVM 209 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~--~~~ 209 (409)
...++++..- +.+...-.....+....|+.+++......+-..... ....++.+.+.+.+.|.+.... +=+
T Consensus 116 ~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~--~p~~cd~l~~~~~~~g~lt~~d~w~R~ 188 (644)
T PRK11619 116 RGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS--LPNACDKLFSVWQQSGKQDPLAYLERI 188 (644)
T ss_pred HHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CChHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8777733221 345555566777888888876555544443222222 3446777777777766554432 112
Q ss_pred HHHHhCCCCCCHHHHHHHHHHH-----------HH-cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH--hcCCHhHH
Q 015329 210 VEMQKLGVKPDVITYTTLISAF-----------YK-DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV--NKRRSWQA 275 (409)
Q Consensus 210 ~~m~~~g~~~~~~~~~~ll~~~-----------~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a 275 (409)
+.+...| +...-..+..-+ .. ..+...+...+.. +.++...-..++.++. ...+.+.|
T Consensus 189 ~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A 260 (644)
T PRK11619 189 RLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENA 260 (644)
T ss_pred HHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHH
Confidence 2222222 111111111111 00 0111111111111 1223211121222222 34567888
Q ss_pred HHHHHHHHHcC-CCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 276 NKLMGLMQRFG-IEPDE--VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 276 ~~~~~~~~~~~-~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
..++....... ..+.. .....+.......+...++...++...... .+......-+..-.+.++++.+...+..|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 261 RLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 88888774433 22221 223334333333332556666666544332 24445555566666888888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 353 MKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
-... .-...-..-+.+++...|+.++|..+|+.+..
T Consensus 339 ~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 339 PMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5432 22333344455777778999999998888743
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.34 E-value=38 Score=32.15 Aligned_cols=133 Identities=8% Similarity=-0.051 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 015329 60 PEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFY 139 (409)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (409)
.+-+-.+|..|..-. .|--.+.+...-...-.|+...|.+.+.......+.....-...|.+...+.|....|..++.
T Consensus 589 ~e~~~~~~~~~~~~~--~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPN--APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHHhcCCC--CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 344555666664332 344444554444445567777777777665543333233333446677777777777888777
Q ss_pred HhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHH
Q 015329 140 DMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFC 197 (409)
Q Consensus 140 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 197 (409)
+.+... .-.+-++-.+.+++....+++.|.+.|++.++... .+..+-+.|...-|
T Consensus 667 q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~--~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 667 QALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT--KCPECENSLKLIRC 721 (886)
T ss_pred HHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC--CChhhHHHHHHHHH
Confidence 766543 33445666777778888888888887776665522 23445555554444
No 369
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=70.23 E-value=56 Score=26.92 Aligned_cols=99 Identities=7% Similarity=-0.033 Sum_probs=48.7
Q ss_pred CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCC-CCChhHHH--HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHh
Q 015329 76 VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQ-GRREGFIM--RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKS 152 (409)
Q Consensus 76 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 152 (409)
+.++..-++.|+--|.-...+.+|.+.|..-..... ..+...++ .-|......|+++.|++..+.+-..-+.-|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 445555566665555444455555555544332222 23333333 345666777888888877777643222233222
Q ss_pred HHHHHH----HHHccCCHHHHHHHHH
Q 015329 153 LNAALK----VLTESRDLKAIQAFLM 174 (409)
Q Consensus 153 ~~~ll~----~~~~~~~~~~a~~~~~ 174 (409)
+-.|.. -..+.|..++|..+.+
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222221 1234455555555553
No 370
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.54 E-value=1.2e+02 Score=29.82 Aligned_cols=59 Identities=8% Similarity=0.040 Sum_probs=36.6
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCc-------hhHHHHHHHhhhC
Q 015329 49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRF-------DYIEHLLEHQKSL 109 (409)
Q Consensus 49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~~ 109 (409)
+.+--+.+.|+.++|+++....... .......+...+..+....+- +....-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4456677899999999999665444 345556777788888765332 2445555554443
No 371
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.98 E-value=1e+02 Score=28.85 Aligned_cols=244 Identities=10% Similarity=0.063 Sum_probs=135.2
Q ss_pred HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC------CHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHH
Q 015329 133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESR------DLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKA 205 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a 205 (409)
...++|+...+. -|+...|+..|..|...- .+.....+++......+..++ ...|..+...++......+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~- 376 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE- 376 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH-
Confidence 334566665542 456666766666665432 235555566555444444444 3345555555555544332
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChh-hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC-HhH-HHHHHHH
Q 015329 206 YLVMVEMQKLGVKPDVITYTTLISAFYKD-NRPE-IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR-SWQ-ANKLMGL 281 (409)
Q Consensus 206 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~-a~~~~~~ 281 (409)
+-..+...++.-|...|-.-+....+. .+.+ .-...+..+...-..+-...|++.. .|+ ... ...++-.
T Consensus 377 --~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 377 --VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred --HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 222222223334555555444444322 1222 1223334444332233344444444 222 111 1222222
Q ss_pred HHHcCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHhHHHHHHHHHHhC-CC
Q 015329 282 MQRFGIEPDEVTY-NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ--EGDFNLAYIMCKDSMKK-NW 357 (409)
Q Consensus 282 ~~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~-~~ 357 (409)
....-..|+..|+ +.++.-+-+.|-..+|..++..+... ..|+...|..+|+.-.. +-+..-+.++++.|... |
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg- 527 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG- 527 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-
Confidence 2222234555544 56677778889999999999998876 35677888888875432 23477788888888664 5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 358 VPSVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
.|+..|...+.--...|..+.+-.++.++.+
T Consensus 528 -~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 -ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred -CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 7888888888777789999888888766543
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.95 E-value=20 Score=28.83 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=15.5
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
.|+...|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444455555555555444444443
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.73 E-value=13 Score=24.71 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=7.6
Q ss_pred HHHHHHHhcCChHHHHH
Q 015329 120 RIMMLYGKAGMIKHAMD 136 (409)
Q Consensus 120 ~l~~~~~~~~~~~~a~~ 136 (409)
.++++|+..|+++++++
T Consensus 48 ~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 48 YLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 374
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.88 E-value=16 Score=23.00 Aligned_cols=25 Identities=24% Similarity=0.096 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
--.+|.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345666666666666666655543
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.21 E-value=85 Score=27.26 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=15.3
Q ss_pred HhhHHHHHHHHHhcCCHhHHH
Q 015329 256 LATFNVRIQHLVNKRRSWQAN 276 (409)
Q Consensus 256 ~~~~~~ll~~~~~~~~~~~a~ 276 (409)
..+|.-++.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 455778888888888876543
No 376
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=67.17 E-value=65 Score=27.95 Aligned_cols=70 Identities=14% Similarity=0.308 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCCHhHH
Q 015329 276 NKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----------EGDFNLA 345 (409)
Q Consensus 276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 345 (409)
.++++.+...++.|.-+.+..+.-.+.+.=.+..++.+|+.+.... .-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4678888888888888888888888888888888999998887642 226666666553 3555555
Q ss_pred HHHHH
Q 015329 346 YIMCK 350 (409)
Q Consensus 346 ~~~~~ 350 (409)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55544
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.05 E-value=48 Score=25.25 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=30.8
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329 278 LMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD 341 (409)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 341 (409)
+.+.+.+.|++++..= ..++..+.+.++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444455555544332 23445555555555666666666655544444443334444444443
No 378
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.78 E-value=1.3e+02 Score=29.42 Aligned_cols=195 Identities=11% Similarity=0.094 Sum_probs=111.2
Q ss_pred CccchHHHHHHHHhcCCCchhHHHHHHHhh-hCCCCCCh--hHHHHHHHHHH-hcCChHHHHHHHHHhhhcCCCCCHH--
Q 015329 78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQK-SLPQGRRE--GFIMRIMMLYG-KAGMIKHAMDTFYDMHLYGCKRTVK-- 151 (409)
Q Consensus 78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-- 151 (409)
.+...|..+|.. |++.++.+. .....|.. .++-.+...+. ...+++.|...+.+....--+++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 344556666654 344455444 33333332 33445666655 7889999999999875432223222
Q ss_pred ---hHHHHHHHHHccCCHHHHHHHHHhcCccC---CCCcCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCH
Q 015329 152 ---SLNAALKVLTESRDLKAIQAFLMEVPEKF---HIQFDIFSFNIV-IKAFCEMGILDKAYLVMVEMQKLG---VKPDV 221 (409)
Q Consensus 152 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g---~~~~~ 221 (409)
.-..++..+.+.+... |....++..+.. +..+-...|..+ +..+...+++..|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 1234455555555554 777666543332 222334445554 334444589999999999887632 23344
Q ss_pred HHHHHHHHHHH--HcCChhhHHHHHHHHHhcC---------CCCCHhhHHHHHHHHH--hcCCHhHHHHHHHHH
Q 015329 222 ITYTTLISAFY--KDNRPEIGNGLWNLMVCKG---------CFPNLATFNVRIQHLV--NKRRSWQANKLMGLM 282 (409)
Q Consensus 222 ~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 282 (409)
.++-.++.+.. +.+..+++.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555544 3455677877777774322 2345677777777555 567766776665555
No 379
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=66.71 E-value=68 Score=27.85 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329 242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 283 (409)
++|+.|...++.|.-.++.-+...+.+.=.+.+++.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555555555555555555555555555554
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.57 E-value=22 Score=28.02 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=31.4
Q ss_pred hhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC----C-------hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329 97 DYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG----M-------IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE 162 (409)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 162 (409)
++|+.-|++.....+......|+ +..+|...+ + +++|.+.|++..+. .|+..+|+.-+....+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~-lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWC-LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh
Confidence 44555555555555543344443 544444322 2 44445555554443 6888888887777753
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.54 E-value=57 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=11.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHh
Q 015329 334 HYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~ 354 (409)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555444
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.51 E-value=21 Score=33.70 Aligned_cols=94 Identities=11% Similarity=-0.032 Sum_probs=69.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 015329 302 CRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKAN 381 (409)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 381 (409)
...|+...|...+.........-.......|.+...+.|....|..++.+.+... ...+-++..+.+++.-..+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3457788888877766544222122334556677777888888988888777665 556678888889999999999999
Q ss_pred HHHHHHHhcCCCCCc
Q 015329 382 TIMALVQRRVPHFSS 396 (409)
Q Consensus 382 ~~~~~~~~~~~~~~~ 396 (409)
+.|+.+.+..+....
T Consensus 697 ~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHHHHhcCCCChh
Confidence 999999988877644
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.50 E-value=44 Score=23.77 Aligned_cols=40 Identities=5% Similarity=-0.115 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYI 99 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 99 (409)
...++|..+.+|+...+. -...+--.-+..+.+.|++++|
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH
Confidence 455556666666655541 1111111223444555666655
No 384
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.30 E-value=94 Score=27.48 Aligned_cols=117 Identities=9% Similarity=-0.058 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 015329 239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR---SGHLDMAKKVYS 315 (409)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~ 315 (409)
.-+.++++..+.+ +.+......+|..+.+..+.++..+-++++...... +...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445555555542 345555555666666666666666666666655322 44455555544332 123444444444
Q ss_pred HHHhC------CC----CCCH-------HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 015329 316 AMLGR------RL----MPNR-------KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW 357 (409)
Q Consensus 316 ~m~~~------~~----~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 357 (409)
+.... +. .+-. .++..+...+..+|..+.|..+++.+++.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33221 10 0011 1122223334567888888888888777653
No 385
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.69 E-value=9.3 Score=28.28 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=15.5
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 234 DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 234 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
-|.-.+|..+|..|.+.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34455566666666666655543 444443
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.58 E-value=40 Score=22.92 Aligned_cols=64 Identities=14% Similarity=-0.005 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHH
Q 015329 206 YLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA 275 (409)
Q Consensus 206 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 275 (409)
-++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +| +..|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3445555555533 33333333222223455556666665555 32 23355555555555544433
No 387
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.06 E-value=42 Score=26.62 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHhhcCCCCCCccch--HHHHHHHHhc--CC--------------CchhHHHHHHHhhhCCCCCC--hhH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYA--FEDTVSRLAG--AR--------------RFDYIEHLLEHQKSLPQGRR--EGF 117 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~--~~--------------~~~~a~~~~~~~~~~~~~~~--~~~ 117 (409)
.++.+-.++++++.... ...+... -..++..+.+ .| -++.|+.+|+.+.+.-..+. ...
T Consensus 30 ~dFr~~rdi~e~ll~~~-~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~~~~lhe~ 108 (200)
T cd00280 30 EDFRRTRDIAEALLVGP-LKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSLPETLHEE 108 (200)
T ss_pred HHHHHHHHHHHHHHhcc-ccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 45666777888776553 2222211 1123333332 12 13568888888876544321 111
Q ss_pred HH-----HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHH
Q 015329 118 IM-----RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKV 159 (409)
Q Consensus 118 ~~-----~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 159 (409)
.. ..+-.|.+.|.+++|.+++++... .|+......-+..
T Consensus 109 i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~ 152 (200)
T cd00280 109 IRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHH
Confidence 11 244568899999999999999876 3454444433333
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.77 E-value=51 Score=27.79 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329 330 QTMIHYLCQEGDFNLAYIMCKDSMK----KN-WVPSVDTISALLEGLKKNNQPCKANTIMALV 387 (409)
Q Consensus 330 ~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 387 (409)
..+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455667777777777777776532 23 2344556666667777777777766654443
No 389
>PRK10941 hypothetical protein; Provisional
Probab=64.61 E-value=90 Score=26.76 Aligned_cols=57 Identities=7% Similarity=-0.029 Sum_probs=26.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 155 AALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 155 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
.+-.+|.+.++++.|..+.+.+..- .| |..-+.--.-.|.+.|.+..|..=++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l---~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQF---DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444555555555555555433222 22 223333344445555555555555555443
No 390
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=64.41 E-value=21 Score=22.71 Aligned_cols=47 Identities=6% Similarity=0.159 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 372 (409)
....++.++..+++-.-.++++..+.++.+.| ..+..+|-.-++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 33445555555555555555555555555555 234444444444443
No 391
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.37 E-value=16 Score=31.35 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSL 153 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 153 (409)
..+|+..|....+.||+++|+.++++.+..|+.--..+|
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556667777777777777777777777777654433333
No 392
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=63.07 E-value=1.1e+02 Score=26.95 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHhcCC----CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329 237 PEIGNGLWNLMVCKGC----FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK 312 (409)
Q Consensus 237 ~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (409)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3567777877776422 33555566677777777776655555555443 3356677788888888888888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHHcCCH--hHHHHHHH
Q 015329 313 VYSAMLGRR-LMPNRKIYQTMIHYLCQEGDF--NLAYIMCK 350 (409)
Q Consensus 313 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~ 350 (409)
+++.....+ +.+ ... ..++.++...+.. +.+.+++.
T Consensus 223 ~l~~~l~~~~v~~-~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRS-QDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-T-TTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCccccc-HHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888888764 443 333 3444444434433 55555544
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.36 E-value=47 Score=22.61 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 015329 276 NKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFN 343 (409)
Q Consensus 276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 343 (409)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| | ..|..++.++...|.-+
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchh
Confidence 3444455555432 33333333222234455555555555555 32 1 13555555555554433
No 394
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.36 E-value=52 Score=25.05 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=34.5
Q ss_pred HHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329 104 EHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL 166 (409)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 166 (409)
+.+.+.|...++.= ..++..+.+.++.-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 33444444444332 235666666666677777777777666555555544555555555543
No 395
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.32 E-value=1e+02 Score=26.54 Aligned_cols=103 Identities=5% Similarity=-0.028 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHH-HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH---
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPNRKIYQ-TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV--- 361 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--- 361 (409)
....+..+...|++.++.+.+.+..++..+. |.+.|+...- .|.-.|....-+++-++..+.|.++|-..+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 4567788889999999999999887776544 6666654322 2222334444477888889999998744333
Q ss_pred -HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 362 -DTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 362 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
.+|.-+. +....++.+|-.++......+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhcccccc
Confidence 3444443 233456888888877766555433
No 396
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.26 E-value=99 Score=26.32 Aligned_cols=207 Identities=10% Similarity=0.048 Sum_probs=121.6
Q ss_pred CCCCCCCChHHHHh-hhhcCChHHHHHHHHHhhcCCCCCC--ccchHHHHHHHHhcCCCchhHHHHHHHhhh-----CCC
Q 015329 40 PLVDKPLEPPALVK-LKAERDPEKLFQLFKANAHNRIVIE--NKYAFEDTVSRLAGARRFDYIEHLLEHQKS-----LPQ 111 (409)
Q Consensus 40 ~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~ 111 (409)
..|+..+.+..-.. -.+...|++|+.-|....+..+-+. .-.+...+|....+.|++++....+.++.. ...
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444443322 3345699999999998876542221 223455678888999999999888887762 112
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHhhh----c-CCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCC---C
Q 015329 112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHL----Y-GCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHI---Q 183 (409)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~ 183 (409)
..+....++++..-+...+.+.-.++|+.-.+ . +-+.-..|-..|...|...+++....+++.++...... .
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 33566677777777777776666665554322 1 00111223345677777778887777777655332110 0
Q ss_pred c-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCChhhHH-HHHHHH
Q 015329 184 F-------DIFSFNIVIKAFCEMGILDKAYLVMVEMQKL-GVKPDVITYTTLISAF-----YKDNRPEIGN-GLWNLM 247 (409)
Q Consensus 184 ~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~-----~~~~~~~~a~-~~~~~m 247 (409)
- -...|..-|..|....+-.+-..+|+..... ...|.+..... |+-| .+.|++++|- ..|+..
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHH
Confidence 0 1345777788888888877777888876642 22344444433 3333 3467777764 333433
No 397
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=61.90 E-value=37 Score=21.33 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=26.0
Q ss_pred HhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH-----HHhcCChHHHHHH
Q 015329 90 LAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMML-----YGKAGMIKHAMDT 137 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~ 137 (409)
+-..|++-+|.++++.+-.....+...++..+|+. ..+.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34567777777777776544333355555555544 2345666655554
No 398
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.86 E-value=53 Score=23.09 Aligned_cols=87 Identities=6% Similarity=-0.090 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT 137 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (409)
...++|..+-+|+...+. -...+--.-+..+...|++++|..+.+... .|+..-|.+| +-.+.|.-+.+..-
T Consensus 19 HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~AL--ce~rlGl~s~l~~r 90 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLAL--CEWRLGLGSALESR 90 (115)
T ss_pred hHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHH--HHHhhccHHHHHHH
Confidence 455666666666655441 011111112345556666666666654441 2233333222 22355555556666
Q ss_pred HHHhhhcCCCCCHHhH
Q 015329 138 FYDMHLYGCKRTVKSL 153 (409)
Q Consensus 138 ~~~m~~~~~~~~~~~~ 153 (409)
+.+|...| .|....|
T Consensus 91 l~rla~sg-~p~lq~F 105 (115)
T TIGR02508 91 LNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66665555 4443333
No 399
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.44 E-value=1e+02 Score=26.23 Aligned_cols=200 Identities=12% Similarity=0.110 Sum_probs=122.2
Q ss_pred CCCccchHHHHHHH-HhcCCCchhHHHHHHHhhhCCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHhhhc---CC--
Q 015329 76 VIENKYAFEDTVSR-LAGARRFDYIEHLLEHQKSLPQGRREG---FIMRIMMLYGKAGMIKHAMDTFYDMHLY---GC-- 146 (409)
Q Consensus 76 ~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~-- 146 (409)
..||+..=+..-.. -.+....++|+.-|++........... ....++..+.+.+++++..+.|.+|... .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 45666554433221 124457889999999888665443333 3446788999999999999999998532 22
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc----CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---
Q 015329 147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK----FHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKP--- 219 (409)
Q Consensus 147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--- 219 (409)
.-+....|.+++-.+...+.+....+++.-.+. .+-..=-.|-.-+.+.|...|++.+..++++++.+....-
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 234567788888887777777776666432111 0000001123456677888888888888888876532111
Q ss_pred --------CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCCCHhhHHHHHHHH-----HhcCCHhHHH
Q 015329 220 --------DVITYTTLISAFYKDNRPEIGNGLWNLMVCK-GCFPNLATFNVRIQHL-----VNKRRSWQAN 276 (409)
Q Consensus 220 --------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~-----~~~~~~~~a~ 276 (409)
=...|..=|..|...++-.+-..++++...- .-.|.+..... |+-| .+.|++++|-
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHH
Confidence 1345777778888888777777777765532 22344443332 3322 3456776664
No 400
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.32 E-value=99 Score=26.00 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=12.9
Q ss_pred HHHHhcCCHhHHHHHHHHH
Q 015329 264 QHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~ 282 (409)
+-+.+.|++.+|..-|.+.
T Consensus 186 N~lfk~~~ykEA~~~YreA 204 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREA 204 (329)
T ss_pred hhhhhhccHHHHHHHHHHH
Confidence 4556677777777777665
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.27 E-value=1.1e+02 Score=26.40 Aligned_cols=128 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYT-------TLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
+.+-..+.+++++|+..+.+....|+..|..+.+ .+...|...|+...--+......+.-...+..--.-++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHh-----cCCHhHHHHHHHHHHHcCCCcCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 265 HLVN-----KRRSWQANKLMGLMQRFGIEPDEVTY-----NLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 265 ~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
.+.. ...++..+.+.....+-..+-..... .-++..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.21 E-value=51 Score=22.69 Aligned_cols=21 Identities=14% Similarity=-0.032 Sum_probs=11.9
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 015329 369 EGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~ 389 (409)
......|++++|.+.+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 445555666666666665543
No 403
>PRK10941 hypothetical protein; Provisional
Probab=60.29 E-value=1.1e+02 Score=26.34 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=26.2
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 334 HYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.+|.+.++++.|+++.+.++.-. +.++.-+.--.-.|.+.|.+..|..=++...+..|+
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34444455555555544444432 223333333333444555555555544444444443
No 404
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=60.26 E-value=75 Score=30.82 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=56.9
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCccC-CCCcCHHHHHHHHHHHHhcCChh------HHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 155 AALKVLTESRDLKAIQAFLMEVPEKF-HIQFDIFSFNIVIKAFCEMGILD------KAYLVMVEMQKLGVKPDVITYTTL 227 (409)
Q Consensus 155 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~m~~~g~~~~~~~~~~l 227 (409)
.|+.+|...|++..+.++++...... |-+.-...+|..++...+.|.++ .|.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 78889999999988888886654332 22223556888888888888764 233333333 355678888888
Q ss_pred HHHHHHcCChhhHHHHHHHHHh
Q 015329 228 ISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~m~~ 249 (409)
+.+-..--+-....-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333333444444443
No 405
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.01 E-value=1.6e+02 Score=27.85 Aligned_cols=102 Identities=11% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNL 246 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 246 (409)
+....+++......|+..+......++. ...|+...|+.+++.....+. ...++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCC--CCcCHHHHHHHh---------------
Confidence 4445555555555566666665555443 345777888887776543210 112222221111
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH
Q 015329 247 MVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV 292 (409)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 292 (409)
|. .+...+..++.+....+....++.++.++.+.|..|...
T Consensus 244 ----g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 ----GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ----CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 22 245555566666555555567888888888888766543
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.77 E-value=1.4e+02 Score=27.20 Aligned_cols=62 Identities=10% Similarity=0.089 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLP--QGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHL 143 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 143 (409)
.+..+...|..+|+++.|.+.|...+.-- .+.....+..+|..-.-.|+|.+...+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34555566666666666666665533210 011223344455555555555555555555443
No 407
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.51 E-value=11 Score=27.83 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=14.6
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 340 GDFNLAYIMCKDSMKKNWVPSVDTISALLE 369 (409)
Q Consensus 340 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 369 (409)
|.-..|..+|++|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 444455556666666655554 4444443
No 408
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=58.78 E-value=1.7e+02 Score=27.99 Aligned_cols=323 Identities=13% Similarity=0.075 Sum_probs=178.0
Q ss_pred CCCChHHHHhhh-hcCChHHHHHHHHHhhcCCCCC-CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHH
Q 015329 44 KPLEPPALVKLK-AERDPEKLFQLFKANAHNRIVI-ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRI 121 (409)
Q Consensus 44 ~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (409)
..+|...+..+. ..++++...+.|+.+...-|.. -+...|...|..-..++++.....+++.+...+...-..+|...
T Consensus 113 vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f 192 (577)
T KOG1258|consen 113 VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRF 192 (577)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHH
Confidence 344555554444 4588888888888887664322 23345777787778888888999999888877554333333332
Q ss_pred HHHHHh-----cCChHHHHHHHHHhhh--------------------cCCCCCH---HhHHHHHHH-------HHccCCH
Q 015329 122 MMLYGK-----AGMIKHAMDTFYDMHL--------------------YGCKRTV---KSLNAALKV-------LTESRDL 166 (409)
Q Consensus 122 ~~~~~~-----~~~~~~a~~~~~~m~~--------------------~~~~~~~---~~~~~ll~~-------~~~~~~~ 166 (409)
....-. ....+++.++-..... .+ .|.. ...+.+... +-..-..
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~ 271 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKSEEE 271 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhhHhH
Confidence 222222 1223333332222211 00 1111 011111111 1111122
Q ss_pred HHHHHHHHhcCccC--CC----CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhH
Q 015329 167 KAIQAFLMEVPEKF--HI----QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240 (409)
Q Consensus 167 ~~a~~~~~~~~~~~--~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 240 (409)
......+++-..+. .+ +++..+|+..+..-.+.|+++.+.-+|++..----. =...|--.+......|+.+.|
T Consensus 272 ~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~ 350 (577)
T KOG1258|consen 272 EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLA 350 (577)
T ss_pred HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHH
Confidence 22233332222221 12 234677888999999999999999999987642111 122333444444455888888
Q ss_pred HHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHH-HHHHHHHHhcCCHHHHH---HHH
Q 015329 241 NGLWNLMVCKGCF--PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTY-NLVIKGFCRSGHLDMAK---KVY 314 (409)
Q Consensus 241 ~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~a~---~~~ 314 (409)
..++..-.+--++ |....+.+.+. -..|+++.|..+++.+.+.- |+..-. ..=+....+.|+.+.+. +++
T Consensus 351 ~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~ 426 (577)
T KOG1258|consen 351 NNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELY 426 (577)
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHH
Confidence 8888777665433 33333333332 33679999999999997763 443221 12233345677888777 444
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-----HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329 315 SAMLGRRLMPNRKIYQTMIHY-----LCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 315 ~~m~~~~~~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 375 (409)
........ +..+...+.-- +.-.++.+.|..++.++.+. ++++...|..+++.+...+
T Consensus 427 s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 427 SSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 44433322 22223322222 23357889999999988875 4777778888887766655
No 409
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=58.52 E-value=1.1e+02 Score=25.73 Aligned_cols=29 Identities=24% Similarity=0.262 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
+..+.-.+..++...|+...+.++++.+.
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 55555555566666666666666666664
No 410
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.61 E-value=1.3e+02 Score=26.05 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=66.0
Q ss_pred hcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCHHHHHHH-HHHHHHcCChhhHHHHHHHHHh
Q 015329 175 EVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK----LGVKPDVITYTTL-ISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 175 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~ 249 (409)
+..+..|-.--...+..+...|++.++.+.+.++..+..+ .|.+.|.....+- .-.|....-+++-++..+.|.+
T Consensus 104 ~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iE 183 (412)
T COG5187 104 EKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIE 183 (412)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 3334444444566788888999999999999888776654 4555554333222 2234444456778888888888
Q ss_pred cCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 250 KGCFPNL----ATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 250 ~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
.|...+. .+|.-+... ...++.+|-.++.+...
T Consensus 184 kGgDWeRrNRyK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 184 KGGDWERRNRYKVYKGIFKM--MRRNFKEAAILLSDILP 220 (412)
T ss_pred hCCCHHhhhhHHHHHHHHHH--HHHhhHHHHHHHHHHhc
Confidence 8865432 344333322 23467777777766643
No 411
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=57.11 E-value=1.3e+02 Score=26.15 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHcCCHhHH
Q 015329 326 RKIYQTMIHYLCQEGDFNLA 345 (409)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a 345 (409)
..+|..|+.+++..|+.+..
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34566677777777765544
No 412
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.86 E-value=1.5e+02 Score=30.75 Aligned_cols=194 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCchhHHHHHHHhh-hCCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH---
Q 015329 85 DTVSRLAGARRFDYIEHLLEHQK-SLPQGRR---EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL--- 157 (409)
Q Consensus 85 ~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--- 157 (409)
..+..+...++|.+|..+.+.-+ ..+.-.+ ..++..+=...-+-++.+.--.++..+.+. ..+...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc--cccccccccccccc
Q ss_pred ---------HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 158 ---------KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMG--ILDKAYLVMVEMQKLGVKPDVITYTT 226 (409)
Q Consensus 158 ---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~ 226 (409)
......++....-..+.+.+++ ..-...-+..++.+|++.+ +++.|+....++.+.+...-......
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alky 854 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKY 854 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhH
Q ss_pred HHHHHHHcCChhhHHHHHHH----HHhcCCCCCHhhHHHHHHHHHhc-------------CCHhHHHHHHHHH
Q 015329 227 LISAFYKDNRPEIGNGLWNL----MVCKGCFPNLATFNVRIQHLVNK-------------RRSWQANKLMGLM 282 (409)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~ll~~~~~~-------------~~~~~a~~~~~~~ 282 (409)
|+-..--..-++.|+.+|+- |....-+.|+.-|--+++-+-+. +++++|+.-+.++
T Consensus 855 l~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 855 LCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred heeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 413
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.01 E-value=63 Score=31.32 Aligned_cols=74 Identities=9% Similarity=-0.034 Sum_probs=39.4
Q ss_pred HHHHHHhcCCCchhHHHHHHHhhhCCCC--CChhHHHHHHHHHHhcCChH------HHHHHHHHhhhcCCCCCHHhHHHH
Q 015329 85 DTVSRLAGARRFDYIEHLLEHQKSLPQG--RREGFIMRIMMLYGKAGMIK------HAMDTFYDMHLYGCKRTVKSLNAA 156 (409)
Q Consensus 85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 156 (409)
.++.+|...|++-++.++++.....+.. .-...++..|+...+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 5667777777777777777766544322 12445555566666666543 2222222222 34455566555
Q ss_pred HHHHH
Q 015329 157 LKVLT 161 (409)
Q Consensus 157 l~~~~ 161 (409)
+.+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55443
No 414
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.96 E-value=1.1e+02 Score=25.06 Aligned_cols=52 Identities=8% Similarity=-0.093 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhCCCC----CCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 343 NLAYIMCKDSMKKNWV----PSVD-TISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 343 ~~a~~~~~~m~~~~~~----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
..|.+.|.+..+..-. .+.. ..-.+.....+.|+.++|.+.|.++.......
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3455555555443211 1222 33334466777888888888888777655433
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.69 E-value=73 Score=22.76 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 328 IYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777777777777777777655
No 416
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.65 E-value=1.5e+02 Score=26.46 Aligned_cols=142 Identities=9% Similarity=0.058 Sum_probs=69.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329 196 FCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK--------DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV 267 (409)
Q Consensus 196 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (409)
|...++++.|.-+|....- .|....-...+++|-+ .|+.-..-+-=.+...+-.+|-...|.-+.++|.
T Consensus 193 ciglk~fe~Al~~~e~~v~---~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~ 269 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT---TPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYL 269 (422)
T ss_pred eeccccHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHh
Confidence 4456688888888887764 2444443444444432 3433110000000000111233334666666665
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHHcCCHh
Q 015329 268 NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTM----IHYLCQEGDFN 343 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----i~~~~~~g~~~ 343 (409)
+...-+ ...+..+-. ..+.+-++..-+...+..+.++.+.-=..+|.++ |...+..+..+
T Consensus 270 ~~~~~e-Lr~lVk~~~---------------~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~q 333 (422)
T KOG2582|consen 270 KDSSTE-LRTLVKKHS---------------ERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQ 333 (422)
T ss_pred cCCcHH-HHHHHHHHH---------------HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchH
Confidence 543322 111111111 1234556666677777776666444444455544 33334556777
Q ss_pred HHHHHHHHHHhCC
Q 015329 344 LAYIMCKDSMKKN 356 (409)
Q Consensus 344 ~a~~~~~~m~~~~ 356 (409)
+|.+..-+|.+.|
T Consensus 334 evek~Ilqmie~~ 346 (422)
T KOG2582|consen 334 EVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHhccC
Confidence 7877777777654
No 417
>PHA03100 ankyrin repeat protein; Provisional
Probab=55.61 E-value=1.8e+02 Score=27.28 Aligned_cols=215 Identities=10% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHHHHHhcCCCchhHHHHHHHhhhCCCCCCh--hHHHHHHHH-----HHhcCChHHHHHHHHHhhhcCCCCCHH---hHH
Q 015329 85 DTVSRLAGARRFDYIEHLLEHQKSLPQGRRE--GFIMRIMML-----YGKAGMIKHAMDTFYDMHLYGCKRTVK---SLN 154 (409)
Q Consensus 85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~ 154 (409)
..+...++.|+.+-+..+++. |..++. ......+.. ....|..+ +.+.+.+.|..++.. -.+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~----g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDN----GADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHc----CCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc
Confidence 345555677777666666544 332221 111223333 44444433 344445555444322 233
Q ss_pred HHHHHHH-ccCCHHHHHHHHHhcCccCCCCcCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH--HHHHH
Q 015329 155 AALKVLT-ESRDLKAIQAFLMEVPEKFHIQFDIF--SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITY--TTLIS 229 (409)
Q Consensus 155 ~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~ 229 (409)
.+..+.. ..|+.+-+..+++. |..++.. .-...+..++..|. .-.++++.+.+.|..++.... .+.+.
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll~~-----g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLLDN-----GANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred hhhHHHhcccChHHHHHHHHHc-----CCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHH
Confidence 3333332 67777777766632 2222211 12234455555562 123445556666765543221 23344
Q ss_pred HHHHcCChhhHHHHHHHHHhcCCCCCHhhH--------HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH---HHHHHH
Q 015329 230 AFYKDNRPEIGNGLWNLMVCKGCFPNLATF--------NVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV---TYNLVI 298 (409)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~li 298 (409)
..+..|+.+ +.+.+.+.|..++.... ...+...+..|+ ...++++.+.+.|..++.. -.+.|
T Consensus 182 ~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL- 254 (480)
T PHA03100 182 IAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPL- 254 (480)
T ss_pred HHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHH-
Confidence 455566443 44455556655543211 334444445555 1134445555666554322 22333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015329 299 KGFCRSGHLDMAKKVYSAMLGRRLMPN 325 (409)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~~~~p~ 325 (409)
...+..|+.+ +++.+.+.|..++
T Consensus 255 ~~A~~~~~~~----iv~~Ll~~gad~n 277 (480)
T PHA03100 255 HYAVYNNNPE----FVKYLLDLGANPN 277 (480)
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCC
Confidence 3334455544 3444445555444
No 418
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.31 E-value=27 Score=17.62 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=11.0
Q ss_pred CChHHHHHHHHHHHhcCC
Q 015329 375 NQPCKANTIMALVQRRVP 392 (409)
Q Consensus 375 g~~~~a~~~~~~~~~~~~ 392 (409)
|+.+.|.++++++.+..+
T Consensus 1 ~~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 1 GDIERARKIYERALEKFP 18 (33)
T ss_pred CcHHHHHHHHHHHHHHCC
Confidence 345666666666665554
No 419
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=55.16 E-value=1.4e+02 Score=25.91 Aligned_cols=113 Identities=13% Similarity=-0.010 Sum_probs=56.4
Q ss_pred HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 015329 228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHL 307 (409)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 307 (409)
+....+.++.......+..+. ....-...++.....|++..|++++.+..+.= . +..-|+.+=..- .++
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~L 173 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HHH
Confidence 344444444444444444441 45555666777778888888888887765420 0 000111111100 122
Q ss_pred HHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 308 DMAKKVYSAMLGR-----RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 308 ~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
++-....+++.+. -...|+..|..++.+|.-.|+...+.+-+..
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2222222222221 1145777888888888877776665544443
No 420
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.16 E-value=1.7e+02 Score=27.90 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C------------CCHHHHHHHHHHHHH
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV-K------------PDVITYTTLISAFYK 233 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~------------~~~~~~~~ll~~~~~ 233 (409)
+.....+..+..+.|+..+......++.. ..|+...|..+++++...|- . ++......+++++ .
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-A 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 44444444454555666666555555443 35778888888776654331 1 1222233344443 3
Q ss_pred cCChhhHHHHHHHHHhcCCCCC
Q 015329 234 DNRPEIGNGLWNLMVCKGCFPN 255 (409)
Q Consensus 234 ~~~~~~a~~~~~~m~~~~~~~~ 255 (409)
.|+.+.++.+++.|...|..|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 4778888888888888876654
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.64 E-value=68 Score=22.07 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHh
Q 015329 332 MIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
+.......|+.++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445667888888887777654
No 422
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=54.17 E-value=13 Score=23.45 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHhhcCCCCCCccc
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKY 81 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~ 81 (409)
=|++.|+..|..+...+.++|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 488999999999998887777654
No 423
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.16 E-value=1.4e+02 Score=25.66 Aligned_cols=22 Identities=5% Similarity=-0.221 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCch
Q 015329 376 QPCKANTIMALVQRRVPHFSSN 397 (409)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~ 397 (409)
+...|...+......+.+....
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHH
Confidence 5556666666666555554433
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.62 E-value=1.1e+02 Score=25.77 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGR----RL-MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
....+..-|.+.|++++|.++|+.+... |. .+...+...+..++.+.|+.+....+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3345667788888899988888887432 32 2344555667777777888887777655543
No 425
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.97 E-value=79 Score=22.29 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
.+.+.|++++|..+.+.+ ..||...|..+-. .+.|.-+++..-+.+|-..|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 445566666666655443 2455555544432 34555555555555555444
No 426
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=52.26 E-value=11 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=18.6
Q ss_pred cCChHHHHHHHHHhhcCCCCCCccc
Q 015329 57 ERDPEKLFQLFKANAHNRIVIENKY 81 (409)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (409)
.=|++.|+..|..+...+.++|+.+
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHhc
Confidence 3588999999999999988888764
No 427
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.92 E-value=1.8e+02 Score=28.89 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
+....++.....+.|+..+......+++.. .|++..++.+++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 555555555555556666666655555433 4777777777766554
No 428
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=51.46 E-value=2.3e+02 Score=27.22 Aligned_cols=328 Identities=10% Similarity=0.045 Sum_probs=186.0
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHh-cCCCchhHHHHHHHhhhC-CCC-CChhHHHHHHHHHHhcCCh
Q 015329 55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLA-GARRFDYIEHLLEHQKSL-PQG-RREGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~ 131 (409)
.+-|..+.+.++|++..+. ++-+...|......+. ..|+.+.....|+..... |.. .+..+|...|..-..++++
T Consensus 90 ~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 3668999999999999765 4566667776665444 567777888888887743 222 2477888888888899999
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc---c------CCHHHHHHHHHhcCcc-------------------CCC-
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTE---S------RDLKAIQAFLMEVPEK-------------------FHI- 182 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~------~~~~~a~~~~~~~~~~-------------------~~~- 182 (409)
.....+|++.++. | ..-|+.....|.+ . ...+.+.++-.....+ .+-
T Consensus 168 k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~ 243 (577)
T KOG1258|consen 168 KRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDP 243 (577)
T ss_pred HHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCc
Confidence 9999999999863 2 2223332222211 1 1122222222111110 000
Q ss_pred CcC-HHHHHHHHHH-------HHhcCChhHHHHHHHHHHhCC---C----CCCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 015329 183 QFD-IFSFNIVIKA-------FCEMGILDKAYLVMVEMQKLG---V----KPDVITYTTLISAFYKDNRPEIGNGLWNLM 247 (409)
Q Consensus 183 ~~~-~~~~~~ll~~-------~~~~g~~~~a~~~~~~m~~~g---~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 247 (409)
.+. ....+.+-.. +-..-........|+.-.+.- + .++..+|+..+.--.+.|+.+.+.-.|+..
T Consensus 244 s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~erc 323 (577)
T KOG1258|consen 244 SKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERC 323 (577)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHH
Confidence 000 0111111111 111112222222233322211 1 224567888888888899999998888876
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015329 248 VCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN 325 (409)
Q Consensus 248 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 325 (409)
.-- +..=...|--.+......|+.+-|..++....+-.++- ....+.+.+ .-..|+++.|..+++.+.+.- |+
T Consensus 324 li~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg 398 (577)
T KOG1258|consen 324 LIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PG 398 (577)
T ss_pred HhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--Cc
Confidence 532 11122334444444555588888888887776654432 233332222 334689999999999998873 44
Q ss_pred HH-HHHHHHHHHHHcCCHhHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 326 RK-IYQTMIHYLCQEGDFNLAY---IMCKDSMKKNWVPSVDTISALLEG-----LKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 326 ~~-~~~~li~~~~~~g~~~~a~---~~~~~m~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.. .-..-+....+.|+.+.+. +++....+ | .-+..+...+..- +.-.++.+.|..++.++.+..++..
T Consensus 399 ~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 399 LVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 32 2223344556778888777 44443322 2 2233333333322 3336789999999999998876653
No 429
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.26 E-value=1.7e+02 Score=25.51 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=17.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329 288 EPDEVTYNLVIKGFCRSGHLDMAKK 312 (409)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~~~~a~~ 312 (409)
..|+..|..++.+|.-.|+.+.+.+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 3577778888888877777665543
No 430
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.08 E-value=1.6e+02 Score=25.17 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMV 210 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~ 210 (409)
|...+..+...|.+.|++.+|...|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56667777778888888877776653
No 431
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.98 E-value=1.7e+02 Score=25.62 Aligned_cols=110 Identities=13% Similarity=0.100 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 015329 202 LDKAYLVMVEMQKLGV----KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANK 277 (409)
Q Consensus 202 ~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 277 (409)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777776422 345555566666666777766655565555543 366667788888888888888888
Q ss_pred HHHHHHHcC-CCcCHHHHHHHHHHHHhcCCH--HHHHHHHHH
Q 015329 278 LMGLMQRFG-IEPDEVTYNLVIKGFCRSGHL--DMAKKVYSA 316 (409)
Q Consensus 278 ~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~ 316 (409)
+++.....+ +++.. . ..++.++...+.. +.+++.+..
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 888887754 44333 2 3344444433333 666666553
No 432
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=50.90 E-value=62 Score=29.57 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhhhcCCCCCHHh----HHHHHHHHHccCCH-HHHHHHH
Q 015329 131 IKHAMDTFYDMHLYGCKRTVKS----LNAALKVLTESRDL-KAIQAFL 173 (409)
Q Consensus 131 ~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~~-~~a~~~~ 173 (409)
...|.+++.++.++|++||..| ..-.+.+|+-.|-. +++.++.
T Consensus 241 ~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr 288 (561)
T COG2987 241 LGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELR 288 (561)
T ss_pred eccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHH
Confidence 4568889999999999988754 44566677777655 6666554
No 433
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.88 E-value=1.8e+02 Score=25.80 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCCCHhhHH--HHHHHHHhcCCHhHHHHHHHHHHH-----cCCCcCHH
Q 015329 223 TYTTLISAFYKDNRPEIGNGLWNLMVCK---GCFPNLATFN--VRIQHLVNKRRSWQANKLMGLMQR-----FGIEPDEV 292 (409)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~ 292 (409)
....++...-+.++.++|++.++++.+. --.|+...|- .+...+...||..++.+++.+..+ .|++|+++
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3445556666778999999999998753 2356666553 455677789999999999999887 67777554
Q ss_pred H-HHHHHHHH
Q 015329 293 T-YNLVIKGF 301 (409)
Q Consensus 293 ~-~~~li~~~ 301 (409)
+ |..+-.-|
T Consensus 157 ~~fY~lssqY 166 (380)
T KOG2908|consen 157 SSFYSLSSQY 166 (380)
T ss_pred hhHHHHHHHH
Confidence 3 44444333
No 434
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.86 E-value=2.9e+02 Score=28.13 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=41.3
Q ss_pred HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329 88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK 167 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 167 (409)
..|.+.|+++.|.++-+.- +..-..++..-...|.+.+++..|-++|.++.+ .|..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHH
Confidence 4566677777776664332 111133444455667788888888888887742 2334444444455554
Q ss_pred HHHHHH
Q 015329 168 AIQAFL 173 (409)
Q Consensus 168 ~a~~~~ 173 (409)
....++
T Consensus 434 ~L~~~L 439 (911)
T KOG2034|consen 434 ALRTFL 439 (911)
T ss_pred HHHHHH
Confidence 444444
No 435
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.80 E-value=2.1e+02 Score=26.47 Aligned_cols=168 Identities=16% Similarity=0.045 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhC---CC-CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 015329 97 DYIEHLLEHQKSL---PQ-GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAF 172 (409)
Q Consensus 97 ~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 172 (409)
++...+++..... +. ..+......++..+ .|+...++.+++.....+...+......++.......+-..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~---- 227 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDG---- 227 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCc----
Q ss_pred HHhcCccCCCCcCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChhhHHHHH
Q 015329 173 LMEVPEKFHIQFDIFSFNIVIKAFCEM---GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN-----RPEIGNGLW 244 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~ 244 (409)
..+..+++++.+. ++.+.|+.++.+|.+.|..|....-..++.++-..| ....|...+
T Consensus 228 --------------~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 228 --------------DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred --------------cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 245 NLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 245 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
+.....|.+--.......+-.++..-+...+..-+....+
T Consensus 294 ~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 294 DAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 436
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=50.43 E-value=90 Score=22.22 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=8.1
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 015329 193 IKAFCEMGILDKAYLVMVE 211 (409)
Q Consensus 193 l~~~~~~g~~~~a~~~~~~ 211 (409)
+..|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444444
No 437
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.65 E-value=1.8e+02 Score=25.59 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCHHHHHHHHHH-HHHcCChhhHHHHHHHHHhcCCCCCH----
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQK----LGVKPDVITYTTLISA-FYKDNRPEIGNGLWNLMVCKGCFPNL---- 256 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~---- 256 (409)
...+-.....||+.||.+.|++.+.+-.+ .|.+.|+..+.+-+.. |....-+.+-++..+.+.+.|...+-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34566667789999999999998877654 4677777766554433 33333345556666667777654432
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
.+|..+-. ....++.+|-.+|-+...
T Consensus 184 KvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 34444332 335688888888877654
No 438
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=49.56 E-value=93 Score=22.14 Aligned_cols=21 Identities=5% Similarity=-0.050 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 015329 262 RIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 262 ll~~~~~~~~~~~a~~~~~~~ 282 (409)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555443
No 439
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.91 E-value=73 Score=22.85 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH
Q 015329 120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL 160 (409)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 160 (409)
+++....++...++|+++++-|.+.| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 46667778888888888888888877 55555444444333
No 440
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.70 E-value=41 Score=21.40 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329 289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ 338 (409)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 338 (409)
|....++.++..+++-.-++.++..+.+..+.|.- +..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 44455666666666666667777777777666643 55556555555554
No 441
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=48.57 E-value=89 Score=29.09 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=40.9
Q ss_pred CchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHh----HHHHHHHHHccCC-HHHH
Q 015329 95 RFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKS----LNAALKVLTESRD-LKAI 169 (409)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~-~~~a 169 (409)
++++|+++.++.++.+...+. |-.-.|.++|.++.+.|+.||..| ....+.+|+-.|- ++++
T Consensus 209 ~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~ 275 (545)
T TIGR01228 209 SLDEALARAEEAKAEGKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDA 275 (545)
T ss_pred CHHHHHHHHHHHHHcCCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHH
Confidence 445555555555544433222 234578889999999999987654 3344556777764 4776
Q ss_pred HHHH
Q 015329 170 QAFL 173 (409)
Q Consensus 170 ~~~~ 173 (409)
.++.
T Consensus 276 ~~lr 279 (545)
T TIGR01228 276 DKLR 279 (545)
T ss_pred HHHH
Confidence 6665
No 442
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=48.48 E-value=1.7e+02 Score=24.90 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=15.8
Q ss_pred CCChHHHHhhhhcCChHHHHHHHHHhhc
Q 015329 45 PLEPPALVKLKAERDPEKLFQLFKANAH 72 (409)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 72 (409)
...+.+++.+.+.+....|+++.+.+..
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 4445555555555566666666665543
No 443
>PRK09857 putative transposase; Provisional
Probab=48.46 E-value=1.8e+02 Score=25.35 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=12.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCC
Q 015329 333 IHYLCQEGDFNLAYIMCKDSMKKNWV 358 (409)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~~ 358 (409)
..-+...|.-+++.++..+|+..|+.
T Consensus 247 AEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 247 AERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333334334455555555555544
No 444
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=48.25 E-value=85 Score=21.31 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 015329 207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMV 248 (409)
Q Consensus 207 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 248 (409)
++|+-....|+..|...|..+++...-.=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555556666666666666655544445555555555554
No 445
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=48.14 E-value=2.6e+02 Score=26.92 Aligned_cols=100 Identities=10% Similarity=-0.038 Sum_probs=43.5
Q ss_pred CCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHH-hHHHHHHHHHccCCHHHHHHH
Q 015329 94 RRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVK-SLNAALKVLTESRDLKAIQAF 172 (409)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~ 172 (409)
|++++|+..++.....+...-+.-....+.-++.......-...|++....+ |+-. +...++..+.. ...+.++
T Consensus 323 ~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~--P~~~~~le~l~~~~~~---~~~~~~L 397 (547)
T PF14929_consen 323 GRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKD--PTMSYSLERLILLHQK---DYSAEQL 397 (547)
T ss_pred ccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCC--CcHHHHHHHHHhhhhh---HHHHHHH
Confidence 5666666666654433221111111122222333445555666666665542 3322 22222222222 3344444
Q ss_pred HHhcCccCCCCcCHHHHHHHHHHHHh
Q 015329 173 LMEVPEKFHIQFDIFSFNIVIKAFCE 198 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~ll~~~~~ 198 (409)
++-+.......|...+|--+...+.+
T Consensus 398 le~i~~~l~~~~s~~iwle~~~~~l~ 423 (547)
T PF14929_consen 398 LEMIALHLDLVPSHPIWLEFVSCFLK 423 (547)
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHh
Confidence 43332333444666666666666665
No 446
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.59 E-value=3.2e+02 Score=27.81 Aligned_cols=223 Identities=9% Similarity=-0.031 Sum_probs=117.7
Q ss_pred HccCCHHHHHHHHHhcCccCC---CCcCH---HHHHHHHH-HHHhcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 015329 161 TESRDLKAIQAFLMEVPEKFH---IQFDI---FSFNIVIK-AFCEMGILDKAYLVMVEMQKL----GVKPDVITYTTLIS 229 (409)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~---~~~~~---~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~ 229 (409)
....++++|..+..+.....+ ..+.. ..++.+-. .....|++++|+++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345666777776655432221 12221 12444322 344568899999888777653 23345666777888
Q ss_pred HHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH-----HHHHhcCCHhH--HHHHHHHHHHc-----CC-CcCHHHHHH
Q 015329 230 AFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI-----QHLVNKRRSWQ--ANKLMGLMQRF-----GI-EPDEVTYNL 296 (409)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~~~~~~--a~~~~~~~~~~-----~~-~p~~~~~~~ 296 (409)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|+... ....|...... ++ .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887776543233433333222 23445663322 22333333221 11 112334455
Q ss_pred HHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHhCCC----CCCHHHHHH
Q 015329 297 VIKGFCRSGHLDMAKKV----YSAMLGRRLMPNRKIY--QTMIHYLCQEGDFNLAYIMCKDSMKKNW----VPSVDTISA 366 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~ 366 (409)
+..++.+ .+.+..- +.--......|-...+ ..|+......|++++|...++++..... .++-.+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555554 3333322 2222222222222222 2567778889999999999888765432 223323222
Q ss_pred HHH--HHHhCCChHHHHHHHHH
Q 015329 367 LLE--GLKKNNQPCKANTIMAL 386 (409)
Q Consensus 367 l~~--~~~~~g~~~~a~~~~~~ 386 (409)
.+. .-...|+.+.+...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 332 23446777777776665
No 447
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=47.25 E-value=2.2e+02 Score=25.73 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHh---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 261 VRIQHLVNKRRSW---QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC 337 (409)
Q Consensus 261 ~ll~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 337 (409)
.++..+...++.. +|..+++...... +-|...--.++..|...|-.+.|.+.|..+.-+.+.-|.-.|.. ..-+.
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~-~~r~~ 262 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLI-LDRLS 262 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHH-HHHHh
Confidence 3444444455444 4556666665553 23555556778888888999999998887765555544443332 22234
Q ss_pred HcCCHhHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 015329 338 QEGDFNLAY-IMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMAL 386 (409)
Q Consensus 338 ~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 386 (409)
..|....+. ..+.....--..-...+-..+..+| +.|.+.+..++.+-
T Consensus 263 ~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af-~~gsysKi~ef~~F 311 (365)
T PF09797_consen 263 TLGPFKSAPENLLENALKFYDNSEKETPEFIIKAF-ENGSYSKIEEFIEF 311 (365)
T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhHHHHHHH
Confidence 445555554 5555443321111223333344444 66777766666543
No 448
>COG0819 TenA Putative transcription activator [Transcription]
Probab=47.02 E-value=98 Score=25.54 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=20.4
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329 280 GLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 280 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (409)
+.+.+....|....|+..+...+..|++.+..
T Consensus 98 ~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~ 129 (218)
T COG0819 98 DELLKTEPSPANKAYTRYLLDTAYSGSFAELL 129 (218)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhcCCHHHHH
Confidence 33444555666777777777777777765543
No 449
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.31 E-value=1.8e+02 Score=24.41 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=14.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC
Q 015329 302 CRSGHLDMAKKVYSAMLGRRLM 323 (409)
Q Consensus 302 ~~~g~~~~a~~~~~~m~~~~~~ 323 (409)
+..+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677777777776655443
No 450
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=46.24 E-value=2.2e+02 Score=27.15 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------C----------CCCHHHHHHHHHH
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG------V----------KPDVITYTTLISA 230 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~----------~~~~~~~~~ll~~ 230 (409)
++...+++...++.|+..+......++. ...|++..|...++.+...+ + ..+....-.++++
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 5555555555556666666666655554 34578888888887764321 1 1122222334444
Q ss_pred HHHcCChhhHHHHHHHHHhcCCCCC
Q 015329 231 FYKDNRPEIGNGLWNLMVCKGCFPN 255 (409)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~~~~~~ 255 (409)
. ..|+..+|+.+++.+...|..|.
T Consensus 268 i-~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 268 I-IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred H-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 3 34778888888888888776554
No 451
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=46.05 E-value=75 Score=23.73 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 015329 114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC 146 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 146 (409)
...++..++-.+...|+++.|+++.+-..+.|.
T Consensus 47 qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 47 QDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred cCchHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 345666677777888888888888888888774
No 452
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.53 E-value=1.8e+02 Score=24.34 Aligned_cols=59 Identities=8% Similarity=-0.048 Sum_probs=35.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChhhHHHHHHHHHh
Q 015329 191 IVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK-DNRPEIGNGLWNLMVC 249 (409)
Q Consensus 191 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~ 249 (409)
.+++.+-+.|+++++.+.++++...+...+..--+.+-.+|-. .|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3566777788888888888888887766666666665555532 2444455555555443
No 453
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=45.43 E-value=1e+02 Score=22.13 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=18.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 333 IHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISAL 367 (409)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 367 (409)
|+-+.++...++|+++++-|.+.| ..+...-+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 444455566666666666666665 4444443333
No 454
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.09 E-value=77 Score=19.91 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=13.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 303 RSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 303 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
+.|++=+|-++++.+-.....+....+..+|+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 44555555555555543322223334444443
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.83 E-value=1.1e+02 Score=21.79 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777888888888888888887766
No 456
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.80 E-value=58 Score=30.03 Aligned_cols=241 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 015329 59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF 138 (409)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (409)
+.++-++.-++..+.+ ..-+..-+...+...-........-+.+....+.+.. +++-.+--+.+++-.+++
T Consensus 7 ~~~~f~~~r~evl~~w-~t~~~vd~~eav~y~k~~p~~k~f~~~L~~a~~~g~~--------l~QPR~G~~~~~e~i~lL 77 (480)
T TIGR01503 7 TDEEFHKIREEVLQQW-PTGKDVDLQDAVDYHKSIPAHKNFAEKLELAKKKGKT--------MAQPRAGVALLDEHIELL 77 (480)
T ss_pred CHHHHHHHHHHHhhcC-CccccCCHHHHHHHHHhCCccccHHHHHHHHHhcCCE--------eecCCCCCCcHHHHHHHH
Q ss_pred HHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCc------------cCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 015329 139 YDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPE------------KFHIQFDIFSFNIVIKAFCEMGILDKAY 206 (409)
Q Consensus 139 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 206 (409)
+.+.+.| .+| ....-++.|.+.++++.|..-+++-.+ ..|+.......+.+=.-.--..--.++.
T Consensus 78 ~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpDar 154 (480)
T TIGR01503 78 RTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPDAR 154 (480)
T ss_pred HHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCcHH
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHH-------HhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329 207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLM-------VCKGCFPNLATFNVRIQHLVNKRRSWQANKLM 279 (409)
Q Consensus 207 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m-------~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 279 (409)
.+++-+...|+.....-.-+.---|.+.=-.++++.-|+.+ .+.|+..|..+|..|...++=-. ..-|..++
T Consensus 155 lL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLvPPs-isiav~il 233 (480)
T TIGR01503 155 LLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPPS-ISNAIGII 233 (480)
T ss_pred HHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCccChH-HHHHHHHH
Q ss_pred HHH--HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 280 GLM--QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 280 ~~~--~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
+-+ .+.|++ .+--+|.+.|+..+=...+..+.+
T Consensus 234 E~Lla~eqGVk-------sisvgy~Q~Gn~~QDiaai~aL~~ 268 (480)
T TIGR01503 234 EGLLAAEQGVK-------NITVGYGQVGNLTQDIAALRALEE 268 (480)
T ss_pred HHHHHHHcCCe-------EEEeccccCCChHHHHHHHHHHHH
No 457
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.67 E-value=3e+02 Score=26.54 Aligned_cols=52 Identities=8% Similarity=0.090 Sum_probs=26.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHH
Q 015329 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC-QEGDFNLAYIMCKDS 352 (409)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m 352 (409)
..+.|.+..|+++-+-+.+....-|+.....+|+.|+ +..++.-.++++++.
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555555555555555443334444445555543 344555555555444
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.36 E-value=21 Score=31.21 Aligned_cols=90 Identities=6% Similarity=-0.076 Sum_probs=43.5
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM 135 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (409)
..|.++.|++.|...+..+ ++....|..-.+++.+.++...|++=+......+..... -|-.=-.+..-.|+|++|-
T Consensus 126 n~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~-~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK-GYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCccccc-ccchhhHHHHHhhchHHHH
Confidence 3455666666666655554 344444555555555666666665555555544332111 1111111222345566666
Q ss_pred HHHHHhhhcCCCC
Q 015329 136 DTFYDMHLYGCKR 148 (409)
Q Consensus 136 ~~~~~m~~~~~~~ 148 (409)
..|....+.++.+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6555555544433
No 459
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.28 E-value=2.5e+02 Score=25.64 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEM 212 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m 212 (409)
+.-+...|...|+++.|++.|.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 334444444455555555554443
No 460
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=44.20 E-value=1.6e+02 Score=23.40 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 015329 273 WQANKLMGLMQRFGIEPDEVTYNLVIKGF 301 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 301 (409)
++|.+.|++..+. +|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3344444444333 55666666555544
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.84 E-value=1.4e+02 Score=23.40 Aligned_cols=46 Identities=15% Similarity=0.023 Sum_probs=26.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL 166 (409)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 166 (409)
++..+...++.-.|.++++.+.+.+...+..|.-..|..+.+.|-+
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4444444555666677777776666555555555555555555544
No 462
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=43.29 E-value=3.7e+02 Score=27.29 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
+.....++.+..+.++.-+......+.+ ...|++.+|+.++++...
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 4555555555455555555555544443 335777777777666543
No 463
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.23 E-value=1.5e+02 Score=23.97 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCChHHHHHHHHHHHhcCC
Q 015329 326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL-EGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
....+.++..|...|+++.|.+.|.-+++.. ..|......+. ..+.+.+.-....++++.+....+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
No 464
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=42.86 E-value=3e+02 Score=26.03 Aligned_cols=82 Identities=6% Similarity=0.094 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHH-HHHHHHhcCChHHHHHHH
Q 015329 60 PEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR-IMMLYGKAGMIKHAMDTF 138 (409)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~ 138 (409)
+.....+|+.+... +..|...|...+..+.+.+.+.+...+|.+|....+. +++.|.. -..-|-.+.+++.|..+|
T Consensus 87 ~~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHH
Confidence 44566666666544 3568888888888887777788888888888755433 4444432 233344455578888877
Q ss_pred HHhhhc
Q 015329 139 YDMHLY 144 (409)
Q Consensus 139 ~~m~~~ 144 (409)
.+-+..
T Consensus 164 lrgLR~ 169 (568)
T KOG2396|consen 164 LRGLRF 169 (568)
T ss_pred HHHhhc
Confidence 776554
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.46 E-value=1.7e+02 Score=23.01 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=21.4
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 227 LISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
++..+...++.-.|.++++.+.+.+...+..|....|..+.+.|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33434344444555555555555554444444444444444444
No 466
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.28 E-value=2.5e+02 Score=26.77 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHHHc
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD------------VITYTTLISAFYKD 234 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~------------~~~~~~ll~~~~~~ 234 (409)
++...++.....+.|+..+......++.. ..|++..+...++.+...+-..+ ......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 55555555555555666666555555443 34777777777777654431112 12233344544 45
Q ss_pred CChhhHHHHHHHHHhcCCCCC
Q 015329 235 NRPEIGNGLWNLMVCKGCFPN 255 (409)
Q Consensus 235 ~~~~~a~~~~~~m~~~~~~~~ 255 (409)
++.++|+.+++.+...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 788888888888888875443
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.07 E-value=2.5e+02 Score=25.01 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 308 DMAKKVYSAMLGRRLMPNR----KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 308 ~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 372 (409)
+++..++.++++. .|+. .-|-+++......|.++.++.+|++.+..|-.|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555566655544 3333 2345555666666777777777777777776666666555555544
No 468
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=41.94 E-value=2.5e+02 Score=24.98 Aligned_cols=138 Identities=10% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH-HHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329 226 TLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ-ANKLMGLMQRFGIEPDEVTYNLVIKGFCRS 304 (409)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 304 (409)
-+.+.|++.++.+.+..+-+.+... |+.. ..++..++-...=.+. +..+++.+... ||......++++.+..
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~l---P~~v-l~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~ 243 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHL---PPEV-LYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSA 243 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhC---ChHH-HHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCC
Confidence 4667888888888877766666553 3333 3444444444332332 34444444443 7889999999999887
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329 305 GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL-CQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK 373 (409)
Q Consensus 305 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 373 (409)
.........+..+.......+..+...+..-| ....+.+....+++.+-.. +|...|+.+..-++.
T Consensus 244 ~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~---~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 244 PASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQ---DDQALFNQLFADLVM 310 (340)
T ss_pred CchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcc---cHHHHHHHHHHHHHh
Confidence 77666666677777664444555444333222 2334555555555554443 335566665554444
No 469
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=41.83 E-value=3.1e+02 Score=28.20 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRFGIE 288 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (409)
.++.+.. .++...++.+++++.+.|..
T Consensus 253 ~lidAL~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 253 EAVDALA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 3444433 45566666677777666654
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.66 E-value=1.4e+02 Score=22.02 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhcCCCCCH-HhHHHHHHHHHccCCHHHHHHHH
Q 015329 132 KHAMDTFYDMHLYGCKRTV-KSLNAALKVLTESRDLKAIQAFL 173 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~ 173 (409)
++..++|..|...||-... .-|......+-..|++..|..+|
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3356666666666654333 23455555666667777776666
No 471
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.32 E-value=3.6e+02 Score=26.57 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------------CCHHHHHHHHHHHHH
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-------------PDVITYTTLISAFYK 233 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-------------~~~~~~~~ll~~~~~ 233 (409)
+....++.....+.|+..+......++. ...|++..++.++++....|.. .+......+++++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 4555555555455566666666655554 3347777777777665433210 12222233334333
Q ss_pred cCChhhHHHHHHHHHhcCCCC
Q 015329 234 DNRPEIGNGLWNLMVCKGCFP 254 (409)
Q Consensus 234 ~~~~~~a~~~~~~m~~~~~~~ 254 (409)
.|+...++.+++++.+.|..+
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 366666666666666665443
No 472
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.06 E-value=2.3e+02 Score=27.01 Aligned_cols=86 Identities=13% Similarity=-0.002 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhH------------HHHHHHHHH
Q 015329 59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGF------------IMRIMMLYG 126 (409)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~l~~~~~ 126 (409)
..++..+.+....+..++..+..+...++... .|+...+...++.+...+...+... ...++.+.
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-
Confidence 34444444444433333545555555444432 3666666666666543322222111 22234443
Q ss_pred hcCChHHHHHHHHHhhhcCCC
Q 015329 127 KAGMIKHAMDTFYDMHLYGCK 147 (409)
Q Consensus 127 ~~~~~~~a~~~~~~m~~~~~~ 147 (409)
..++++.|+.+++++...|..
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred HcCCHHHHHHHHHHHHHcCCC
Confidence 446677777777777666643
No 473
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.61 E-value=4.5e+02 Score=27.44 Aligned_cols=277 Identities=10% Similarity=-0.006 Sum_probs=0.0
Q ss_pred hhhcCCCcCCCCCCCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhh
Q 015329 29 AVSLNKFPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKS 108 (409)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 108 (409)
.+....+...-..+++..-...+..+.+.++++..-.+...+ .+ ++...-...+.++.+.+........+..+..
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL--~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~ 694 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAAL--GD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG 694 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHH--cC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc
Q ss_pred CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHH
Q 015329 109 LPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFS 188 (409)
Q Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (409)
. .+..+-...+.++...+ ......+...+. .+|..+-...+.++.+.+..+.....+..- +...
T Consensus 695 ~---~d~~VR~~A~~aL~~~~-~~~~~~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~--------~~~V 758 (897)
T PRK13800 695 S---PDPVVRAAALDVLRALR-AGDAALFAAALG----DPDHRVRIEAVRALVSVDDVESVAGAATDE--------NREV 758 (897)
T ss_pred C---CCHHHHHHHHHHHHhhc-cCCHHHHHHHhc----CCCHHHHHHHHHHHhcccCcHHHHHHhcCC--------CHHH
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329 189 FNIVIKAFCEMGILDK-AYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV 267 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~-a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (409)
-.....++...+..+. +...+..+.+ .+|...-...+.++.+.|..+.+...+....+ .++...-...+.++.
T Consensus 759 R~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~ 832 (897)
T PRK13800 759 RIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALA 832 (897)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHH
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 015329 268 NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE 339 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 339 (409)
..+..+....+...+. .|+...-...+.++.+.+....+...+....+. .|...-.....++...
T Consensus 833 ~l~~~~a~~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D---~d~~Vr~~A~~aL~~~ 897 (897)
T PRK13800 833 GAAADVAVPALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTD---SDADVRAYARRALAHA 897 (897)
T ss_pred hccccchHHHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHhhC
No 474
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.45 E-value=91 Score=22.60 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=16.0
Q ss_pred HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
++.+...+..-.|.++++.+.+.+...+..|.-..|..+.+
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 33333334444444444444444433333333333333333
No 475
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=40.16 E-value=1.4e+02 Score=21.32 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-C-HhHHHHHHHHHHhCC
Q 015329 294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG-D-FNLAYIMCKDSMKKN 356 (409)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~-~~~a~~~~~~m~~~~ 356 (409)
...++.-|...|++++|.+.+.++.... -.......++..+...+ . -+....++..+.+.+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 3456777888899999999998876432 23344455555555443 2 334455666666555
No 476
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.07 E-value=1.3e+02 Score=21.12 Aligned_cols=28 Identities=11% Similarity=-0.050 Sum_probs=14.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 366 ALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 366 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.|--.|.+.|+.+.|.+-|+.-+..+|.
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 3444455556666655555554444433
No 477
>PRK09857 putative transposase; Provisional
Probab=40.06 E-value=2.5e+02 Score=24.44 Aligned_cols=66 Identities=8% Similarity=0.055 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN 325 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 325 (409)
+..++......++.++..++++.+.+.. .........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4455555556666666666666665542 22333334555666666666677788888888777644
No 478
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=39.80 E-value=3.1e+02 Score=25.45 Aligned_cols=253 Identities=9% Similarity=-0.029 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK 194 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 194 (409)
......+|+-|...|+..+..+.++++-.-...|-...+-.-+..=.++..-+-+-.++..+.-. +-++...-+....
T Consensus 345 kk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e--~fsteDv~~~F~m 422 (645)
T KOG0403|consen 345 KKDLTPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE--VFSTEDVEKGFDM 422 (645)
T ss_pred HHhhHHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc--cCCHHHHHHHHHH
Q ss_pred HHHhcC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh-hHHHHHHHHH---------------------
Q 015329 195 AFCEMG----ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE-IGNGLWNLMV--------------------- 248 (409)
Q Consensus 195 ~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~--------------------- 248 (409)
.+-... +.-.|-+.+.....+.+. |.+..+.-+..+...-... .+.+.++...
T Consensus 423 LLesaedtALD~p~a~~elalFlARAVi-DdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~ 501 (645)
T KOG0403|consen 423 LLESAEDTALDIPRASQELALFLARAVI-DDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGG 501 (645)
T ss_pred HHhcchhhhccccccHHHHHHHHHHHHh-hcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCC
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 015329 249 CKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKI 328 (409)
Q Consensus 249 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 328 (409)
...+..-..-...++.-|...|+..+|...++++.---+. ....+.+++.+.-+.|+-...+.+++...+. ...|
T Consensus 502 g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT 576 (645)
T KOG0403|consen 502 GWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLIT 576 (645)
T ss_pred cchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----Ccee
Q ss_pred HHHHHHHHHHcCC--------HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 329 YQTMIHYLCQEGD--------FNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 329 ~~~li~~~~~~g~--------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
-+.|-++|.+..+ +..|.+.|+...+.+ ..+-..+..|...|-..++
T Consensus 577 ~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~-~~~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 577 TNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVEEC-FQNGIISKQLRDLCPSRLR 631 (645)
T ss_pred HHHhhhhhhhhhccCcccccCCCcHHHHHHHHHHHH-HHcCchhHHhhhcchhhhc
No 479
>PRK05414 urocanate hydratase; Provisional
Probab=39.62 E-value=1.1e+02 Score=28.79 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhhcCCCCCHHh----HHHHHHHHHccCC-HHHHHHHH
Q 015329 131 IKHAMDTFYDMHLYGCKRTVKS----LNAALKVLTESRD-LKAIQAFL 173 (409)
Q Consensus 131 ~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~-~~~a~~~~ 173 (409)
...|.++|.++.+.|+.||..| ....+.+|+-.|- ++++.++.
T Consensus 241 ~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr 288 (556)
T PRK05414 241 LGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELR 288 (556)
T ss_pred eccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHH
Confidence 4578889999999999998754 3334447777774 37776665
No 480
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.33 E-value=98 Score=22.17 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=32.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 344 (409)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 455555556666788888888777766677776666777777776554
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.05 E-value=1.1e+02 Score=21.84 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHhc
Q 015329 238 EIGNGLWNLMVCK 250 (409)
Q Consensus 238 ~~a~~~~~~m~~~ 250 (409)
-.|.++++.+.+.
T Consensus 17 ~sa~ei~~~l~~~ 29 (116)
T cd07153 17 LTAEEIYERLRKK 29 (116)
T ss_pred CCHHHHHHHHHhc
Confidence 3334444444333
No 482
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.96 E-value=4.6e+02 Score=27.07 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCC-CHHhHHHHHHHHHccCCH--HHHHHHHHhcCccC---CCCc----
Q 015329 117 FIMRIMMLYGKAGMIKHAMDTFYDMHLYG--CKR-TVKSLNAALKVLTESRDL--KAIQAFLMEVPEKF---HIQF---- 184 (409)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~-~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~---~~~~---- 184 (409)
-|..|+..|...|+.++|+++|.+..+.. ... ...-+..+++-+.+.+.. +.+.++-+-...+. |++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46779999999999999999999997632 011 112233344444444433 33333221111110 0000
Q ss_pred CH---HH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329 185 DI---FS-FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK 233 (409)
Q Consensus 185 ~~---~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 233 (409)
|. .+ =...+-.|+.....+-+...++.+....-..+..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 00 00 001122345555666667777777655444556666666666654
No 483
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.95 E-value=1.2e+02 Score=20.29 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=19.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCH
Q 015329 120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV 150 (409)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 150 (409)
+++..+.++.-.++|+++++-|.+.| ..+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~ 65 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITP 65 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCH
Confidence 45566667777777777777777666 3443
No 484
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.57 E-value=1.3e+02 Score=20.62 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
|...--.+...+...|++++|++.+-++++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455556666667777777777766666655
No 485
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=38.36 E-value=1.7e+02 Score=21.91 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=32.4
Q ss_pred HhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC
Q 015329 69 ANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR 114 (409)
Q Consensus 69 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (409)
.....|...+|. .+..++-.+...|+++.|.++.+.+.+.+....
T Consensus 38 g~L~~g~g~qd~-Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P 82 (132)
T PF05944_consen 38 GVLASGSGAQDD-VLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMP 82 (132)
T ss_pred HHHHcCCCCcCc-hHHhhHhhhhcccCHHHHHHHHHHHHHcCCCcc
Confidence 334444344554 556677778899999999999999998876544
No 486
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.24 E-value=3.2e+02 Score=25.05 Aligned_cols=213 Identities=12% Similarity=-0.002 Sum_probs=95.3
Q ss_pred HHHhhhhcCChHHHHHHHHHhhcCCCCCCccch--HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC---hhHHHHHHHH
Q 015329 50 ALVKLKAERDPEKLFQLFKANAHNRIVIENKYA--FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR---EGFIMRIMML 124 (409)
Q Consensus 50 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 124 (409)
.|......|+.+.+..+++. | ..++... ..+.+...+..|+.+-+.-+++. |..++ .... +.+..
T Consensus 5 ~L~~A~~~g~~~iv~~Ll~~----g-~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~~~-t~L~~ 74 (413)
T PHA02875 5 ALCDAILFGELDIARRLLDI----G-INPNFEIYDGISPIKLAMKFRDSEAIKLLMKH----GAIPDVKYPDIE-SELHD 74 (413)
T ss_pred HHHHHHHhCCHHHHHHHHHC----C-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCccccCCCcc-cHHHH
Confidence 34555566776655555543 2 2232211 22344555566776655444433 22111 1111 23445
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHH--HHHHHHHHHhcCCh
Q 015329 125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFS--FNIVIKAFCEMGIL 202 (409)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~ 202 (409)
.+..|+.+.+..+++.-....-..+.. -.+.+...+..|+.+-+..+++. |..|+... -.+.+...+..|+.
T Consensus 75 A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~iv~~Ll~~-----gad~~~~~~~g~tpLh~A~~~~~~ 148 (413)
T PHA02875 75 AVEEGDVKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLDIMKLLIAR-----GADPDIPNTDKFSPLHLAVMMGDI 148 (413)
T ss_pred HHHCCCHHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHHHHHHHHhC-----CCCCCCCCCCCCCHHHHHHHcCCH
Confidence 567777776655554321100000101 12334445566777766666632 22222111 12234445566776
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhh---HHHHHHHHHhcCCHhHHH
Q 015329 203 DKAYLVMVEMQKLGVKPD---VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLAT---FNVRIQHLVNKRRSWQAN 276 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~ 276 (409)
+-+..+ .+.|..++ ..-++.+. ..+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+
T Consensus 149 ~~v~~L----l~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~--- 216 (413)
T PHA02875 149 KGIELL----IDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID--- 216 (413)
T ss_pred HHHHHH----HhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH---
Confidence 554443 34443322 22233333 334455543 4455566665554322 124444445566654
Q ss_pred HHHHHHHHcCCCcCH
Q 015329 277 KLMGLMQRFGIEPDE 291 (409)
Q Consensus 277 ~~~~~~~~~~~~p~~ 291 (409)
+.+.+.+.|..++.
T Consensus 217 -iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 -IVRLFIKRGADCNI 230 (413)
T ss_pred -HHHHHHHCCcCcch
Confidence 44445556666553
No 487
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.83 E-value=2.9e+02 Score=24.45 Aligned_cols=119 Identities=5% Similarity=-0.058 Sum_probs=81.3
Q ss_pred HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHhHHHHH
Q 015329 272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ---EGDFNLAYIM 348 (409)
Q Consensus 272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~ 348 (409)
.+.-+.++++..+.+. -+......++..+.+..+.++..+-|+++...... +...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3455678888877743 36777788889999999999999999999887332 67778877776654 2345566666
Q ss_pred HHHHHhC------CC----CCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 349 CKDSMKK------NW----VPS-------VDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 349 ~~~m~~~------~~----~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
|.+.++. +. .+. ...+..+...+...|..+.|..+++-+.+.+.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5554332 21 011 12333344556779999999999999988775
No 488
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.28 E-value=91 Score=22.60 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=20.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329 332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 375 (409)
++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444444455555555555554445554444445554444
No 489
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=37.21 E-value=2.2e+02 Score=24.00 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----C--------CC------------CCH
Q 015329 307 LDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----N--------WV------------PSV 361 (409)
Q Consensus 307 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--------~~------------~~~ 361 (409)
+++|..+++.-... ..+..+...+..++...|+-..+.++++.+... + .. .++
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 45666666655333 336665555666667777778888887776532 0 00 023
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 362 DTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
++=...+-++.+.++.+.+..+.+-+.++.
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~qr 222 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQR 222 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 333344456666699999999999887654
No 490
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.16 E-value=4.4e+02 Score=26.39 Aligned_cols=86 Identities=7% Similarity=0.012 Sum_probs=55.0
Q ss_pred HhHHHHHHHHH-HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CCHHHHHHHHHHHH
Q 015329 272 SWQANKLMGLM-QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR---LM----------PNRKIYQTMIHYLC 337 (409)
Q Consensus 272 ~~~a~~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~----------p~~~~~~~li~~~~ 337 (409)
.++....+... .+.|+..+......++... .|++..++.+++.+...| +. .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 34445555544 4567777887777777654 599999999998876642 11 12223334444444
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCC
Q 015329 338 QEGDFNLAYIMCKDSMKKNWVPS 360 (409)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~~~ 360 (409)
.++...++.+++++...|+.+.
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4778888888888888775433
No 491
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=37.09 E-value=2.8e+02 Score=26.55 Aligned_cols=88 Identities=9% Similarity=0.055 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCC----CCC------------hhHHHHHH
Q 015329 59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQ----GRR------------EGFIMRIM 122 (409)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~------------~~~~~~l~ 122 (409)
+.++..+.++...+..++..+......++.. ..|+...|..+++++..... ..+ ......|+
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Confidence 4445555555554443355566666555553 34777788887777643211 111 11222344
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCC
Q 015329 123 MLYGKAGMIKHAMDTFYDMHLYGCKRT 149 (409)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~m~~~~~~~~ 149 (409)
.+. ..|+.+.|+.+++++...|..|.
T Consensus 266 ~ai-~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 266 EYI-IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 443 44788888888888887775543
No 492
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=37.03 E-value=82 Score=27.51 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=8.2
Q ss_pred HHHhcCChHHHHHHHHH
Q 015329 124 LYGKAGMIKHAMDTFYD 140 (409)
Q Consensus 124 ~~~~~~~~~~a~~~~~~ 140 (409)
.+...+.++.|+..++.
T Consensus 222 ~l~~~~gl~~Al~~L~~ 238 (301)
T TIGR03362 222 ALAAEGGLEAALQRLQQ 238 (301)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 34444455555555544
No 493
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.90 E-value=3.3e+02 Score=24.84 Aligned_cols=55 Identities=2% Similarity=-0.050 Sum_probs=36.3
Q ss_pred HHHHcCChhhHHHHHHHHHhcCCCCCHh--hHHHHHHHHHh--cCCHhHHHHHHHHHHHc
Q 015329 230 AFYKDNRPEIGNGLWNLMVCKGCFPNLA--TFNVRIQHLVN--KRRSWQANKLMGLMQRF 285 (409)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 285 (409)
.+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778888888888888876 444444 44444555543 55677788888776654
No 494
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.62 E-value=1.5e+02 Score=20.83 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=22.5
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 015329 99 IEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDM 141 (409)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 141 (409)
.++-++++...+....+.....|--.|++.|+.+.|.+-|+.=
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 3344444444444444455555555566666666666555543
No 495
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.53 E-value=1e+02 Score=21.45 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=39.8
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCH
Q 015329 126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDI 186 (409)
Q Consensus 126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (409)
.+..+++.|.++|..+.+.|. .+...+..+...+...++.+-. .++ ...++..+.|+.
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L-~~~ke~~~~~~~ 92 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYV-TLKRRRAVCPDL 92 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHh-ccCCcCCCCCch
Confidence 456778888999999988883 4444445677777777777777 555 454555666664
No 496
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.48 E-value=2.5e+02 Score=23.32 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=56.5
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015329 252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTY--NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR 326 (409)
Q Consensus 252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 326 (409)
+.++..-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++ ..-|......|++++|.+....+.-.-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 345555666666666655556666555543 334444 33333 34566678888998888888876544333343
Q ss_pred HHHHHHHH----HHHHcCCHhHHHHHHHH
Q 015329 327 KIYQTMIH----YLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 327 ~~~~~li~----~~~~~g~~~~a~~~~~~ 351 (409)
..+-.+.. -..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33322221 23567777777777765
No 497
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.28 E-value=3.2e+02 Score=24.45 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=48.0
Q ss_pred cCCCc-hhHHHHHHHhhhCCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHH
Q 015329 92 GARRF-DYIEHLLEHQKSLPQGR--REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLT 161 (409)
Q Consensus 92 ~~~~~-~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 161 (409)
..|.. +++..+++.+.+.-+.. -..+|..++......|.++.++.+|++....|-.|-...-..+++.+.
T Consensus 114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34443 46777777666442221 146777888888888888888888888888887776666666666554
No 498
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.19 E-value=1.9e+02 Score=21.94 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHcC
Q 015329 274 QANKLMGLMQRFG 286 (409)
Q Consensus 274 ~a~~~~~~~~~~~ 286 (409)
.|.++++.+.+.+
T Consensus 35 sa~eI~~~l~~~~ 47 (148)
T PRK09462 35 SAEDLYKRLIDMG 47 (148)
T ss_pred CHHHHHHHHHhhC
Confidence 3344444443333
No 499
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.46 E-value=2.7e+02 Score=23.41 Aligned_cols=123 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC-----------CCCHH
Q 015329 260 NVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RL-----------MPNRK 327 (409)
Q Consensus 260 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~-----------~p~~~ 327 (409)
.+.+--|.+..+..-..++.+-....+++-+..-...++ +...|+...|+..++.-... |. .|.+.
T Consensus 163 RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~ 240 (333)
T KOG0991|consen 163 RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPL 240 (333)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChH
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH--HHHHHH
Q 015329 328 IYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKAN--TIMALV 387 (409)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~ 387 (409)
....++..|. .+++++|.+++.++-+.| .......+.+.+.+-... ..+-. ++++++
T Consensus 241 ~v~~ml~~~~-~~~~~~A~~il~~lw~lg-ysp~Dii~~~FRv~K~~~-~~E~~rlE~ikei 299 (333)
T KOG0991|consen 241 LVKKMLQACL-KRNIDEALKILAELWKLG-YSPEDIITTLFRVVKNMD-VAESLRLEFIKEI 299 (333)
T ss_pred HHHHHHHHHH-hccHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHH
No 500
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=35.03 E-value=2.3e+02 Score=22.45 Aligned_cols=124 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 015329 207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFG 286 (409)
Q Consensus 207 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 286 (409)
++-..+.+.+..++. ...++..+.+.|..-|...-.+.+..-.+.| ..-..+..++.+.|
T Consensus 39 ELr~kL~k~~~~~~~------------------Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG 98 (174)
T COG2137 39 ELRRKLAKKEFSEEI------------------IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG 98 (174)
T ss_pred HHHHHHHhccCCHHH------------------HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHH
Q 015329 287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR-LMPNRKIYQTMIHYLCQEGD-FNLAYIMCKDS 352 (409)
Q Consensus 287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m 352 (409)
+ +..+....+..+......+.|...+..-.... ..++..-...+...+...|- ++.+..++..+
T Consensus 99 i--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 99 I--DDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred C--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Done!