Query 015329
Match_columns 409
No_of_seqs 532 out of 2813
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 10:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.1E-34 3.8E-39 267.1 24.4 206 168-374 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 3.3E-33 1.1E-37 257.3 24.4 206 203-408 7-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 6.4E-31 2.2E-35 251.1 38.6 287 114-408 304-596 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.9E-31 1.7E-35 251.9 34.2 352 47-408 87-528 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-25 3.7E-30 203.3 39.1 341 53-405 42-382 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-25 8E-30 201.1 39.2 343 52-407 7-350 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3E-23 1E-27 191.0 36.5 306 78-394 24-362 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.3E-22 4.6E-27 186.6 36.7 335 49-394 31-414 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.3E-21 4.6E-26 182.9 32.3 236 152-394 239-482 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 5.5E-20 1.9E-24 163.6 37.5 305 81-395 4-340 (359)
11 3fp2_A TPR repeat-containing p 99.9 3.1E-20 1.1E-24 174.7 32.2 332 53-396 34-497 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 3.2E-19 1.1E-23 158.6 35.2 310 52-372 11-351 (359)
13 3hym_B Cell division cycle pro 99.9 3.7E-19 1.3E-23 156.4 31.8 293 77-377 19-321 (330)
14 3hym_B Cell division cycle pro 99.9 3.4E-19 1.2E-23 156.6 30.3 285 114-406 21-314 (330)
15 2gw1_A Mitochondrial precursor 99.9 1.6E-19 5.5E-24 168.8 29.6 343 53-406 15-459 (514)
16 1fch_A Peroxisomal targeting s 99.9 3.2E-19 1.1E-23 159.5 26.8 290 92-388 37-357 (368)
17 1fch_A Peroxisomal targeting s 99.9 4.1E-19 1.4E-23 158.8 27.0 290 56-351 37-355 (368)
18 3fp2_A TPR repeat-containing p 99.8 7.5E-18 2.6E-22 158.4 32.5 304 80-391 25-408 (537)
19 3spa_A Mtrpol, DNA-directed RN 99.8 4.9E-20 1.7E-24 175.1 14.6 114 222-335 128-245 (1134)
20 4eqf_A PEX5-related protein; a 99.8 8.4E-19 2.9E-23 156.7 21.3 267 115-386 65-352 (365)
21 4eqf_A PEX5-related protein; a 99.8 2.3E-18 8E-23 153.8 23.2 270 78-351 63-352 (365)
22 3spa_A Mtrpol, DNA-directed RN 99.8 3.2E-20 1.1E-24 176.4 10.9 119 186-304 127-249 (1134)
23 3mkr_A Coatomer subunit epsilo 99.8 3.7E-17 1.3E-21 140.7 28.2 255 124-395 8-269 (291)
24 3cv0_A Peroxisome targeting si 99.8 8.2E-18 2.8E-22 147.6 24.0 154 231-387 148-312 (327)
25 3cv0_A Peroxisome targeting si 99.8 1.1E-17 3.9E-22 146.6 24.7 266 79-351 20-311 (327)
26 3mkr_A Coatomer subunit epsilo 99.8 9.6E-17 3.3E-21 138.1 26.3 251 52-320 7-264 (291)
27 1b89_A Protein (clathrin heavy 99.8 2.7E-18 9.3E-23 151.4 14.0 282 56-383 15-304 (449)
28 2xm6_A Protein corresponding t 99.8 4.6E-14 1.6E-18 131.1 42.2 305 57-390 56-396 (490)
29 2xm6_A Protein corresponding t 99.8 4.7E-14 1.6E-18 131.0 40.8 308 57-393 92-435 (490)
30 2ooe_A Cleavage stimulation fa 99.7 1.3E-13 4.3E-18 129.4 38.8 185 204-393 256-457 (530)
31 1b89_A Protein (clathrin heavy 99.7 2.2E-16 7.6E-21 139.3 18.3 267 43-348 31-304 (449)
32 2pl2_A Hypothetical conserved 99.7 1.7E-15 6E-20 124.5 22.4 201 183-389 2-213 (217)
33 3uq3_A Heat shock protein STI1 99.7 2.3E-15 7.7E-20 127.2 23.6 225 117-391 7-237 (258)
34 2ho1_A Type 4 fimbrial biogene 99.7 1.5E-14 5.3E-19 121.7 26.9 206 186-395 37-243 (252)
35 3uq3_A Heat shock protein STI1 99.7 1.7E-14 5.9E-19 121.7 25.5 231 80-354 5-235 (258)
36 2vq2_A PILW, putative fimbrial 99.7 3.9E-14 1.3E-18 116.9 26.3 207 185-395 7-216 (225)
37 1xi4_A Clathrin heavy chain; a 99.7 3E-13 1E-17 133.2 35.6 316 48-408 989-1326(1630)
38 2q7f_A YRRB protein; TPR, prot 99.7 1.1E-14 3.8E-19 121.8 21.9 207 185-396 22-228 (243)
39 1ouv_A Conserved hypothetical 99.7 4.7E-13 1.6E-17 114.2 31.8 223 152-393 8-254 (273)
40 4g1t_A Interferon-induced prot 99.7 3.5E-14 1.2E-18 131.2 26.3 337 53-395 60-464 (472)
41 3u4t_A TPR repeat-containing p 99.7 6.2E-14 2.1E-18 119.4 24.5 161 121-285 9-171 (272)
42 2pl2_A Hypothetical conserved 99.7 2.6E-14 8.8E-19 117.5 21.2 196 149-351 4-210 (217)
43 2ooe_A Cleavage stimulation fa 99.6 1.5E-12 5E-17 122.2 35.3 205 185-393 271-495 (530)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-13 4.8E-18 115.8 25.6 200 81-285 38-238 (252)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.8E-14 1.3E-18 120.9 21.2 248 126-384 16-269 (275)
46 4g1t_A Interferon-induced prot 99.6 1.6E-12 5.4E-17 120.1 33.5 311 77-394 48-405 (472)
47 2vq2_A PILW, putative fimbrial 99.6 1.5E-13 5.1E-18 113.3 24.0 198 118-319 11-210 (225)
48 2h6f_A Protein farnesyltransfe 99.6 4.3E-13 1.5E-17 119.3 27.8 248 115-371 97-363 (382)
49 1ouv_A Conserved hypothetical 99.6 1.7E-12 5.9E-17 110.6 30.5 223 115-356 6-252 (273)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.2E-14 7.4E-19 122.4 18.6 246 93-349 18-269 (275)
51 3u4t_A TPR repeat-containing p 99.6 6.5E-13 2.2E-17 113.1 27.7 228 52-285 11-250 (272)
52 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.7E-18 115.7 20.5 197 153-355 26-222 (243)
53 2h6f_A Protein farnesyltransfe 99.6 3.6E-13 1.2E-17 119.8 24.8 237 150-394 97-352 (382)
54 3sf4_A G-protein-signaling mod 99.6 1.7E-14 5.7E-19 130.4 15.8 299 79-377 8-363 (406)
55 4a1s_A PINS, partner of inscut 99.6 1.7E-13 5.7E-18 124.2 20.4 279 82-392 50-374 (411)
56 4a1s_A PINS, partner of inscut 99.6 8.2E-14 2.8E-18 126.3 18.1 270 53-355 57-372 (411)
57 1xi4_A Clathrin heavy chain; a 99.6 1.1E-11 3.6E-16 122.5 32.7 288 52-382 1057-1376(1630)
58 3ro2_A PINS homolog, G-protein 99.6 1.2E-13 4E-18 121.2 17.6 136 257-392 184-334 (338)
59 3sf4_A G-protein-signaling mod 99.6 4.6E-13 1.6E-17 120.9 20.9 276 115-391 9-337 (406)
60 3ro2_A PINS homolog, G-protein 99.5 4E-13 1.4E-17 117.8 19.7 274 82-355 7-332 (338)
61 3vtx_A MAMA; tetratricopeptide 99.5 2.9E-12 1E-16 102.2 22.4 166 185-354 4-169 (184)
62 3vtx_A MAMA; tetratricopeptide 99.5 5.7E-12 1.9E-16 100.5 23.0 170 220-393 4-173 (184)
63 2ond_A Cleavage stimulation fa 99.5 2.7E-11 9.4E-16 105.1 29.1 186 203-393 81-273 (308)
64 3ulq_A Response regulator aspa 99.5 1.9E-12 6.5E-17 116.2 22.2 300 90-391 22-369 (383)
65 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-12 5.6E-17 119.0 20.9 312 53-396 12-393 (452)
66 2ond_A Cleavage stimulation fa 99.5 6.3E-11 2.2E-15 102.8 28.5 218 132-355 33-270 (308)
67 3ulq_A Response regulator aspa 99.5 3.9E-12 1.3E-16 114.1 21.3 298 54-354 22-367 (383)
68 3nf1_A KLC 1, kinesin light ch 99.5 3.7E-13 1.3E-17 116.8 13.9 166 118-283 30-222 (311)
69 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-12 5.6E-17 112.7 17.6 243 149-392 26-309 (311)
70 3q15_A PSP28, response regulat 99.5 2.4E-11 8.1E-16 108.8 25.0 310 77-389 7-364 (378)
71 4abn_A Tetratricopeptide repea 99.5 2.7E-12 9.1E-17 118.3 19.0 209 96-312 84-313 (474)
72 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-11 1.1E-15 110.3 26.0 308 59-391 89-422 (452)
73 4abn_A Tetratricopeptide repea 99.5 2.7E-12 9.1E-17 118.3 18.7 192 186-382 102-313 (474)
74 3as5_A MAMA; tetratricopeptide 99.4 1.9E-11 6.4E-16 97.2 19.9 167 225-395 12-178 (186)
75 1hz4_A MALT regulatory protein 99.4 1.8E-10 6.2E-15 102.8 27.0 302 84-393 18-352 (373)
76 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.9E-15 103.5 25.3 266 54-320 24-322 (373)
77 3as5_A MAMA; tetratricopeptide 99.4 6.5E-11 2.2E-15 94.0 20.8 163 188-354 10-172 (186)
78 3q15_A PSP28, response regulat 99.4 5.5E-11 1.9E-15 106.4 22.1 298 54-354 22-364 (378)
79 4gyw_A UDP-N-acetylglucosamine 99.4 6.6E-11 2.2E-15 113.6 21.5 166 185-354 8-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.4 9.6E-11 3.3E-15 112.5 21.5 167 220-390 8-174 (723)
81 4i17_A Hypothetical protein; T 99.3 2.4E-10 8.4E-15 94.3 20.5 200 184-395 5-214 (228)
82 4i17_A Hypothetical protein; T 99.3 7.3E-10 2.5E-14 91.4 22.6 197 147-356 4-210 (228)
83 3mv2_B Coatomer subunit epsilo 99.3 1.6E-09 5.6E-14 91.7 24.7 60 190-249 104-164 (310)
84 3edt_B KLC 2, kinesin light ch 99.3 5.3E-11 1.8E-15 101.5 15.2 228 162-390 13-281 (283)
85 3edt_B KLC 2, kinesin light ch 99.3 1.1E-10 3.8E-15 99.4 15.4 123 91-213 12-154 (283)
86 4e6h_A MRNA 3'-END-processing 99.2 5.1E-08 1.7E-12 92.7 33.2 211 191-406 348-584 (679)
87 4e6h_A MRNA 3'-END-processing 99.2 2.7E-08 9.3E-13 94.5 30.7 341 47-393 69-536 (679)
88 2fo7_A Synthetic consensus TPR 99.2 1.4E-09 4.7E-14 81.2 17.8 132 258-392 3-134 (136)
89 3mv2_B Coatomer subunit epsilo 99.2 1.4E-08 4.7E-13 86.0 25.1 61 225-285 104-165 (310)
90 1qqe_A Vesicular transport pro 99.2 1.3E-09 4.6E-14 93.6 17.7 198 193-392 44-271 (292)
91 1qqe_A Vesicular transport pro 99.2 2.5E-09 8.4E-14 91.9 18.7 164 188-353 79-267 (292)
92 2fo7_A Synthetic consensus TPR 99.2 4.5E-09 1.5E-13 78.3 17.5 127 189-318 4-130 (136)
93 3qky_A Outer membrane assembly 99.1 4.2E-09 1.4E-13 88.8 17.4 167 186-354 15-223 (261)
94 3qky_A Outer membrane assembly 99.1 1.1E-08 3.8E-13 86.2 18.9 174 220-395 14-229 (261)
95 3urz_A Uncharacterized protein 99.1 1.3E-08 4.6E-13 82.5 18.6 110 190-302 8-133 (208)
96 2pzi_A Probable serine/threoni 99.1 5.1E-09 1.7E-13 100.8 17.8 174 197-376 402-583 (681)
97 3rjv_A Putative SEL1 repeat pr 99.0 3E-08 1E-12 80.7 19.3 177 205-393 5-200 (212)
98 3urz_A Uncharacterized protein 99.0 1.4E-08 4.9E-13 82.3 17.2 165 223-394 6-190 (208)
99 3dra_A Protein farnesyltransfe 99.0 3.2E-07 1.1E-11 78.3 25.8 219 132-389 50-286 (306)
100 2vsy_A XCC0866; transferase, g 99.0 1.4E-08 4.8E-13 95.9 19.1 154 199-356 2-158 (568)
101 2pzi_A Probable serine/threoni 99.0 3E-09 1E-13 102.4 13.8 185 91-282 402-602 (681)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 9.4E-08 3.2E-12 78.5 21.0 189 185-396 3-219 (225)
103 2r5s_A Uncharacterized protein 99.0 1.4E-08 4.7E-13 80.0 14.2 157 192-352 12-170 (176)
104 2vsy_A XCC0866; transferase, g 99.0 2E-08 6.8E-13 94.9 17.7 155 163-322 2-159 (568)
105 4ga2_A E3 SUMO-protein ligase 99.0 5.6E-09 1.9E-13 79.8 11.3 138 234-375 10-148 (150)
106 3qou_A Protein YBBN; thioredox 99.0 1.3E-07 4.3E-12 80.9 20.8 165 114-283 116-282 (287)
107 3dra_A Protein farnesyltransfe 99.0 1.7E-06 6E-11 73.8 27.6 227 87-319 39-286 (306)
108 2r5s_A Uncharacterized protein 99.0 3.1E-08 1.1E-12 78.0 15.7 157 121-282 12-170 (176)
109 1hh8_A P67PHOX, NCF-2, neutrop 99.0 7.2E-08 2.5E-12 78.3 18.1 128 223-355 8-150 (213)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.2E-07 4.2E-12 77.8 19.4 188 149-356 3-214 (225)
111 3qou_A Protein YBBN; thioredox 98.9 6.5E-08 2.2E-12 82.7 18.3 164 185-352 116-281 (287)
112 4ga2_A E3 SUMO-protein ligase 98.9 5.7E-09 1.9E-13 79.8 10.2 119 198-319 9-128 (150)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 6.2E-08 2.1E-12 83.8 17.8 218 163-383 4-254 (307)
114 3rjv_A Putative SEL1 repeat pr 98.9 1.1E-07 3.9E-12 77.2 18.0 163 185-356 17-198 (212)
115 3u3w_A Transcriptional activat 98.8 3.9E-07 1.3E-11 78.1 19.3 162 192-353 81-264 (293)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 1.4E-07 4.9E-12 81.5 16.0 194 151-347 37-253 (307)
117 3u3w_A Transcriptional activat 98.8 1.2E-06 4E-11 75.1 21.7 163 227-389 81-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.6E-07 1.9E-11 73.0 18.1 127 189-320 9-150 (213)
119 2uy1_A Cleavage stimulation fa 98.8 1.4E-05 4.6E-10 73.7 28.9 310 58-389 28-412 (493)
120 4f3v_A ESX-1 secretion system 98.8 8.3E-07 2.8E-11 74.2 18.7 198 198-403 18-248 (282)
121 2qfc_A PLCR protein; TPR, HTH, 98.8 2.3E-06 7.8E-11 73.3 21.7 166 188-353 77-264 (293)
122 1a17_A Serine/threonine protei 98.8 5.8E-07 2E-11 69.5 16.1 129 257-388 14-144 (166)
123 2c2l_A CHIP, carboxy terminus 98.7 5.5E-08 1.9E-12 82.9 11.0 196 185-391 3-200 (281)
124 1a17_A Serine/threonine protei 98.7 7.2E-07 2.5E-11 68.9 16.6 128 187-317 14-143 (166)
125 3q7a_A Farnesyltransferase alp 98.7 1.1E-05 3.7E-10 69.8 24.7 140 126-270 65-215 (349)
126 4gco_A Protein STI-1; structur 98.7 4E-07 1.4E-11 67.1 13.9 101 292-394 14-114 (126)
127 3gw4_A Uncharacterized protein 98.7 9.2E-07 3.2E-11 71.0 17.0 155 198-353 4-174 (203)
128 1na0_A Designed protein CTPR3; 98.7 1E-06 3.4E-11 64.2 15.6 98 186-285 9-106 (125)
129 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.5E-11 74.3 18.9 168 222-389 76-265 (293)
130 4gco_A Protein STI-1; structur 98.7 9.3E-07 3.2E-11 65.1 14.9 98 186-285 13-110 (126)
131 2e2e_A Formate-dependent nitri 98.7 2.8E-07 9.6E-12 72.4 12.9 120 233-355 22-144 (177)
132 1na0_A Designed protein CTPR3; 98.7 1E-06 3.4E-11 64.3 15.2 24 329-352 80-103 (125)
133 3gyz_A Chaperone protein IPGC; 98.7 3.3E-07 1.1E-11 69.8 12.6 97 294-392 39-135 (151)
134 3q7a_A Farnesyltransferase alp 98.7 3.2E-05 1.1E-09 66.9 26.2 175 91-271 65-257 (349)
135 2vgx_A Chaperone SYCD; alterna 98.7 1.3E-07 4.3E-12 72.0 9.6 99 293-393 23-121 (148)
136 3gyz_A Chaperone protein IPGC; 98.7 1.3E-06 4.5E-11 66.4 15.0 104 255-362 35-138 (151)
137 2vyi_A SGTA protein; chaperone 98.7 1.3E-06 4.3E-11 64.3 14.8 117 257-376 13-129 (131)
138 2vyi_A SGTA protein; chaperone 98.7 1.5E-06 5E-11 64.0 15.0 118 186-306 12-129 (131)
139 4f3v_A ESX-1 secretion system 98.7 9.7E-07 3.3E-11 73.8 15.2 189 56-250 18-237 (282)
140 3gw4_A Uncharacterized protein 98.7 4.2E-07 1.4E-11 73.0 12.9 159 232-391 3-177 (203)
141 2lni_A Stress-induced-phosphop 98.6 1.3E-06 4.6E-11 64.5 14.6 117 185-304 15-131 (133)
142 2lni_A Stress-induced-phosphop 98.6 9.9E-07 3.4E-11 65.2 13.6 92 259-352 19-110 (133)
143 1p5q_A FKBP52, FK506-binding p 98.6 1.5E-06 5.2E-11 76.0 15.6 132 220-353 146-292 (336)
144 2e2e_A Formate-dependent nitri 98.6 7.4E-07 2.5E-11 70.0 12.1 121 197-320 21-144 (177)
145 1p5q_A FKBP52, FK506-binding p 98.6 2.2E-06 7.4E-11 75.0 16.2 132 185-318 146-292 (336)
146 2kck_A TPR repeat; tetratricop 98.6 9.6E-07 3.3E-11 63.0 11.6 102 292-395 7-111 (112)
147 3upv_A Heat shock protein STI1 98.6 1.3E-06 4.5E-11 64.1 12.5 97 293-391 6-102 (126)
148 3sz7_A HSC70 cochaperone (SGT) 98.6 2E-06 6.9E-11 66.5 14.1 99 255-355 10-108 (164)
149 2vgx_A Chaperone SYCD; alterna 98.5 1.2E-06 4.1E-11 66.6 11.5 87 229-317 29-115 (148)
150 2xcb_A PCRH, regulatory protei 98.5 1.4E-06 4.7E-11 65.7 11.8 95 296-392 23-117 (142)
151 2c2l_A CHIP, carboxy terminus 98.5 9.5E-07 3.2E-11 75.2 11.9 63 186-249 38-100 (281)
152 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-05 3.6E-10 58.0 16.0 93 297-391 10-102 (118)
153 3q49_B STIP1 homology and U bo 98.5 1.7E-06 5.8E-11 64.5 11.8 99 291-391 9-107 (137)
154 1elw_A TPR1-domain of HOP; HOP 98.5 4.2E-06 1.5E-10 60.1 13.7 112 255-369 3-114 (118)
155 3dss_A Geranylgeranyl transfer 98.5 0.00011 3.9E-09 63.1 23.8 185 203-393 91-307 (331)
156 3upv_A Heat shock protein STI1 98.5 7.8E-06 2.7E-10 59.9 14.6 97 187-285 5-101 (126)
157 2fbn_A 70 kDa peptidylprolyl i 98.5 5.7E-07 2E-11 72.1 8.7 88 292-381 89-176 (198)
158 2uy1_A Cleavage stimulation fa 98.4 0.00013 4.4E-09 67.2 24.9 100 76-178 11-117 (493)
159 1hxi_A PEX5, peroxisome target 98.4 2.6E-06 8.8E-11 62.1 10.8 95 297-393 23-117 (121)
160 4gcn_A Protein STI-1; structur 98.4 7.9E-06 2.7E-10 60.1 13.5 57 261-318 13-69 (127)
161 3dss_A Geranylgeranyl transfer 98.4 0.00011 3.7E-09 63.2 22.2 203 187-394 27-271 (331)
162 4gcn_A Protein STI-1; structur 98.4 8.5E-06 2.9E-10 59.9 13.5 98 187-285 9-112 (127)
163 4b4t_Q 26S proteasome regulato 98.4 3E-05 1E-09 70.2 19.6 119 269-387 108-242 (434)
164 2fbn_A 70 kDa peptidylprolyl i 98.4 1.1E-05 3.9E-10 64.4 14.8 98 186-284 38-150 (198)
165 1elr_A TPR2A-domain of HOP; HO 98.4 6.9E-06 2.4E-10 60.3 12.3 98 187-285 5-108 (131)
166 2dba_A Smooth muscle cell asso 98.4 2.3E-05 7.7E-10 59.0 15.3 95 257-354 29-127 (148)
167 2dba_A Smooth muscle cell asso 98.4 1.4E-05 4.7E-10 60.2 13.9 103 290-395 27-133 (148)
168 2xcb_A PCRH, regulatory protei 98.4 1E-05 3.5E-10 60.8 13.0 97 187-285 19-115 (142)
169 2kck_A TPR repeat; tetratricop 98.3 6.2E-06 2.1E-10 58.6 11.1 96 188-285 8-106 (112)
170 3q49_B STIP1 homology and U bo 98.3 1.7E-05 5.9E-10 58.9 13.9 98 185-284 8-105 (137)
171 3sz7_A HSC70 cochaperone (SGT) 98.3 2.2E-05 7.6E-10 60.5 14.8 99 185-285 10-108 (164)
172 1elr_A TPR2A-domain of HOP; HO 98.3 1.2E-05 4.1E-10 59.0 12.7 108 257-367 5-118 (131)
173 4b4t_Q 26S proteasome regulato 98.3 2E-05 6.8E-10 71.4 16.6 198 52-249 12-244 (434)
174 2xev_A YBGF; tetratricopeptide 98.3 2.4E-05 8.1E-10 57.4 12.7 90 263-354 9-104 (129)
175 3rkv_A Putative peptidylprolyl 98.2 1.1E-05 3.8E-10 62.1 11.2 99 256-355 11-126 (162)
176 3ro3_A PINS homolog, G-protein 98.2 6.9E-06 2.4E-10 62.8 10.0 98 293-390 51-158 (164)
177 3ro3_A PINS homolog, G-protein 98.2 1.4E-05 4.7E-10 61.1 11.5 97 258-354 51-157 (164)
178 1wao_1 Serine/threonine protei 98.2 3.9E-06 1.3E-10 77.1 9.3 119 229-350 14-134 (477)
179 1hxi_A PEX5, peroxisome target 98.2 1.8E-05 6.2E-10 57.6 11.0 95 189-285 20-114 (121)
180 3k9i_A BH0479 protein; putativ 98.2 3.4E-06 1.2E-10 61.0 6.6 86 269-355 3-90 (117)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.7E-05 9.1E-10 71.2 13.8 123 221-346 268-405 (457)
182 2if4_A ATFKBP42; FKBP-like, al 98.2 8.1E-06 2.8E-10 71.4 9.6 156 220-396 178-334 (338)
183 1wao_1 Serine/threonine protei 98.2 2.2E-05 7.4E-10 72.1 12.7 124 189-315 9-134 (477)
184 2xev_A YBGF; tetratricopeptide 98.1 9E-05 3.1E-09 54.2 13.8 94 298-393 9-108 (129)
185 3k9i_A BH0479 protein; putativ 98.1 4.9E-06 1.7E-10 60.2 6.5 55 118-173 30-84 (117)
186 1ihg_A Cyclophilin 40; ppiase 98.1 5.4E-05 1.8E-09 67.0 13.5 91 290-382 272-362 (370)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 7.2E-05 2.5E-09 68.3 14.5 131 186-318 268-413 (457)
188 1dce_A Protein (RAB geranylger 98.1 0.0004 1.4E-08 65.0 19.4 177 198-379 40-244 (567)
189 3rkv_A Putative peptidylprolyl 98.0 0.00011 3.8E-09 56.3 13.0 99 186-285 11-126 (162)
190 1ihg_A Cyclophilin 40; ppiase 98.0 8.1E-05 2.8E-09 65.8 13.4 139 187-347 224-362 (370)
191 2hr2_A Hypothetical protein; a 98.0 7.5E-05 2.6E-09 56.3 10.4 100 295-394 15-135 (159)
192 1dce_A Protein (RAB geranylger 97.9 0.0012 4E-08 61.9 19.7 158 236-397 44-228 (567)
193 1klx_A Cysteine rich protein B 97.9 0.00023 7.7E-09 53.0 12.2 110 271-391 10-127 (138)
194 2l6j_A TPR repeat-containing p 97.9 2.5E-05 8.6E-10 55.4 5.9 63 292-355 5-67 (111)
195 2hr2_A Hypothetical protein; a 97.8 0.00041 1.4E-08 52.3 12.2 63 187-249 12-85 (159)
196 1klx_A Cysteine rich protein B 97.8 0.00069 2.4E-08 50.3 13.6 50 304-356 74-127 (138)
197 2if4_A ATFKBP42; FKBP-like, al 97.8 8.7E-05 3E-09 64.8 9.8 149 186-355 179-328 (338)
198 3n71_A Histone lysine methyltr 97.8 8.7E-05 3E-09 67.9 10.0 126 265-390 318-464 (490)
199 2kat_A Uncharacterized protein 97.7 0.00014 4.7E-09 52.1 8.0 80 274-355 3-82 (115)
200 3n71_A Histone lysine methyltr 97.7 0.00023 8E-09 65.1 11.1 124 231-354 319-463 (490)
201 2kat_A Uncharacterized protein 97.7 0.00023 8E-09 50.9 8.6 59 82-141 21-79 (115)
202 2l6j_A TPR repeat-containing p 97.7 8E-05 2.7E-09 52.7 6.0 92 255-349 3-101 (111)
203 1na3_A Designed protein CTPR2; 97.6 0.00084 2.9E-08 45.2 10.5 57 296-353 14-70 (91)
204 1na3_A Designed protein CTPR2; 97.6 0.001 3.6E-08 44.7 10.7 64 186-250 9-72 (91)
205 3ma5_A Tetratricopeptide repea 97.4 0.00054 1.9E-08 47.6 7.2 64 290-354 6-69 (100)
206 1zu2_A Mitochondrial import re 97.4 0.00043 1.5E-08 52.1 6.5 51 343-394 63-124 (158)
207 3ma5_A Tetratricopeptide repea 97.3 0.0013 4.4E-08 45.6 8.7 64 255-319 6-69 (100)
208 1zu2_A Mitochondrial import re 97.3 0.001 3.5E-08 50.1 8.2 86 198-285 14-120 (158)
209 2kc7_A BFR218_protein; tetratr 97.2 0.0029 1E-07 43.4 9.2 88 297-394 6-94 (99)
210 2kc7_A BFR218_protein; tetratr 97.2 0.00078 2.7E-08 46.5 6.0 58 262-320 6-64 (99)
211 1wy6_A Hypothetical protein ST 97.1 0.044 1.5E-06 39.4 16.0 150 116-288 6-157 (172)
212 3bee_A Putative YFRE protein; 97.0 0.0085 2.9E-07 40.7 10.0 69 324-393 4-75 (93)
213 1pc2_A Mitochondria fission pr 97.0 0.0065 2.2E-07 45.2 9.7 85 308-394 15-104 (152)
214 3ly7_A Transcriptional activat 97.0 0.024 8.2E-07 49.1 14.6 67 325-393 276-342 (372)
215 3mkq_A Coatomer beta'-subunit; 96.9 0.068 2.3E-06 52.4 19.4 153 88-280 607-760 (814)
216 3mkq_A Coatomer beta'-subunit; 96.9 0.019 6.3E-07 56.5 15.2 154 158-351 607-761 (814)
217 3ly7_A Transcriptional activat 96.9 0.024 8.3E-07 49.0 13.5 64 220-285 276-339 (372)
218 3qwp_A SET and MYND domain-con 96.8 0.011 3.9E-07 53.0 11.5 91 298-388 294-398 (429)
219 1wy6_A Hypothetical protein ST 96.8 0.082 2.8E-06 38.0 14.1 140 55-218 18-157 (172)
220 3qww_A SET and MYND domain-con 96.8 0.0076 2.6E-07 54.1 10.1 85 304-388 311-409 (433)
221 3qww_A SET and MYND domain-con 96.6 0.0059 2E-07 54.9 8.4 87 268-354 310-410 (433)
222 2v5f_A Prolyl 4-hydroxylase su 96.6 0.017 5.7E-07 40.2 9.2 65 290-354 4-74 (104)
223 3qwp_A SET and MYND domain-con 96.6 0.013 4.3E-07 52.7 10.3 93 262-354 293-399 (429)
224 3mkq_B Coatomer subunit alpha; 96.5 0.14 4.8E-06 39.0 14.0 99 196-315 15-113 (177)
225 3mkq_B Coatomer subunit alpha; 96.4 0.16 5.5E-06 38.7 13.4 130 229-388 13-142 (177)
226 1nzn_A CGI-135 protein, fissio 96.2 0.055 1.9E-06 38.7 9.4 89 304-394 14-107 (126)
227 3bee_A Putative YFRE protein; 96.0 0.18 6.2E-06 34.0 11.2 48 272-320 25-72 (93)
228 4b4t_P 26S proteasome regulato 96.0 0.85 2.9E-05 41.1 19.0 49 94-142 30-83 (445)
229 2v5f_A Prolyl 4-hydroxylase su 95.9 0.099 3.4E-06 36.2 9.9 66 185-250 4-75 (104)
230 1pc2_A Mitochondria fission pr 95.7 0.05 1.7E-06 40.4 7.7 85 61-149 15-103 (152)
231 3u64_A Protein TP_0956; tetrat 95.5 0.15 5.1E-06 42.4 10.5 84 273-358 180-272 (301)
232 3u64_A Protein TP_0956; tetrat 95.1 1.2 4.1E-05 37.1 18.2 129 162-295 133-281 (301)
233 3lvg_A Clathrin heavy chain 1; 95.1 1.1E-05 3.7E-10 71.2 -15.7 265 43-346 53-324 (624)
234 1v54_E Cytochrome C oxidase po 94.6 0.62 2.1E-05 31.5 9.6 47 344-390 28-74 (109)
235 4h7y_A Dual specificity protei 94.5 0.81 2.8E-05 33.7 10.9 53 270-323 74-126 (161)
236 3o48_A Mitochondria fission 1 94.3 0.69 2.4E-05 33.2 10.1 74 321-394 35-111 (134)
237 4h7y_A Dual specificity protei 94.3 1.1 3.9E-05 32.9 12.8 64 305-370 74-137 (161)
238 4ady_A RPN2, 26S proteasome re 94.1 5 0.00017 39.5 22.6 256 90-354 384-657 (963)
239 4gns_B Protein CSD3, chitin bi 93.9 0.49 1.7E-05 45.4 11.3 53 334-387 345-397 (754)
240 1nzn_A CGI-135 protein, fissio 93.9 0.47 1.6E-05 33.9 8.5 84 270-355 15-103 (126)
241 1y8m_A FIS1; mitochondria, unk 93.5 1.5 5.3E-05 31.8 11.9 72 323-394 36-110 (144)
242 2y69_E Cytochrome C oxidase su 93.0 1.4 4.9E-05 31.5 9.6 48 344-391 71-118 (152)
243 4fhn_B Nucleoporin NUP120; pro 92.7 9.8 0.00034 38.9 22.2 80 224-305 902-985 (1139)
244 4ady_A RPN2, 26S proteasome re 92.5 8.9 0.0003 37.8 22.7 273 54-337 384-672 (963)
245 2ff4_A Probable regulatory pro 92.2 2.6 8.9E-05 37.1 12.9 70 258-328 173-247 (388)
246 4gns_B Protein CSD3, chitin bi 92.1 0.9 3.1E-05 43.6 10.2 128 117-247 250-397 (754)
247 2wpv_A GET4, UPF0363 protein Y 92.1 4.9 0.00017 33.9 20.4 188 60-283 13-215 (312)
248 2ff4_A Probable regulatory pro 91.9 0.98 3.3E-05 39.8 9.8 69 225-294 175-248 (388)
249 3lpz_A GET4 (YOR164C homolog); 91.7 5.7 0.00019 33.8 21.0 167 81-283 36-214 (336)
250 3lvg_A Clathrin heavy chain 1; 91.7 0.089 3E-06 47.1 2.7 226 33-276 72-324 (624)
251 1v54_E Cytochrome C oxidase po 91.3 2 6.7E-05 29.1 8.2 50 130-179 25-74 (109)
252 4b4t_P 26S proteasome regulato 91.0 8.4 0.00029 34.6 21.0 262 128-389 29-323 (445)
253 4fhn_B Nucleoporin NUP120; pro 91.0 6.1 0.00021 40.4 15.6 193 83-283 815-1048(1139)
254 3ffl_A Anaphase-promoting comp 88.8 2.8 9.7E-05 31.4 8.3 59 48-106 24-89 (167)
255 2y69_E Cytochrome C oxidase su 88.4 3.6 0.00012 29.5 8.0 50 130-179 68-117 (152)
256 1zbp_A Hypothetical protein VP 88.3 5.8 0.0002 32.5 10.5 118 88-214 5-128 (273)
257 1qsa_A Protein (soluble lytic 87.5 19 0.00065 33.8 25.8 311 53-389 15-347 (618)
258 3ffl_A Anaphase-promoting comp 86.7 8.4 0.00029 28.9 10.0 64 80-143 20-91 (167)
259 4b4t_R RPN7, 26S proteasome re 85.9 14 0.00049 32.9 12.9 98 188-285 133-237 (429)
260 1zbp_A Hypothetical protein VP 85.0 3 0.0001 34.1 7.2 55 300-355 6-60 (273)
261 3o48_A Mitochondria fission 1 84.4 9.3 0.00032 27.4 10.0 68 288-355 37-107 (134)
262 1y8m_A FIS1; mitochondria, unk 83.5 11 0.00037 27.5 9.8 72 77-150 36-110 (144)
263 3esl_A Checkpoint serine/threo 82.4 9.3 0.00032 29.7 8.6 44 130-173 94-138 (202)
264 4b4t_R RPN7, 26S proteasome re 80.3 26 0.00087 31.2 12.2 98 223-320 133-237 (429)
265 3lpz_A GET4 (YOR164C homolog); 79.7 28 0.00095 29.7 20.0 167 118-319 38-215 (336)
266 1wdy_A 2-5A-dependent ribonucl 77.7 8.9 0.00031 31.3 8.1 17 88-104 10-26 (285)
267 4a1g_A Mitotic checkpoint seri 77.7 19 0.00064 26.6 9.2 51 98-148 83-134 (152)
268 3txn_A 26S proteasome regulato 76.3 39 0.0013 29.6 23.1 58 191-248 104-166 (394)
269 3esl_A Checkpoint serine/threo 73.2 31 0.001 26.8 10.7 75 181-255 72-149 (202)
270 2wvi_A Mitotic checkpoint seri 71.6 29 0.001 25.9 9.0 51 98-148 78-129 (164)
271 3kea_A K1L; tropism, ANK repea 69.4 46 0.0016 27.3 10.6 17 88-104 67-83 (285)
272 4aez_C MAD3, mitotic spindle c 68.8 33 0.0011 27.2 8.5 52 97-148 131-183 (223)
273 3ltm_A Alpha-REP4; protein eng 68.4 39 0.0013 26.1 19.9 17 79-95 32-48 (211)
274 2uwj_G Type III export protein 68.2 25 0.00084 23.7 7.8 51 300-356 48-98 (115)
275 3hra_A Ankyrin repeat family p 68.2 22 0.00075 27.1 7.8 15 159-173 78-92 (201)
276 3txn_A 26S proteasome regulato 67.9 63 0.0021 28.3 24.1 161 226-389 104-283 (394)
277 2p58_C Putative type III secre 67.6 26 0.00087 23.7 8.7 51 300-356 49-99 (116)
278 4b4t_S RPN3, 26S proteasome re 67.5 49 0.0017 30.1 10.5 27 115-141 231-257 (523)
279 1k1a_A B-cell lymphoma 3-encod 67.5 40 0.0014 26.5 9.5 17 90-106 16-32 (241)
280 2uwj_G Type III export protein 67.0 26 0.00089 23.6 7.1 86 58-153 20-105 (115)
281 3eu9_A Huntingtin-interacting 66.7 19 0.00066 28.3 7.4 18 87-104 46-63 (240)
282 2wpv_A GET4, UPF0363 protein Y 66.1 59 0.002 27.4 20.3 80 290-388 133-215 (312)
283 2p58_C Putative type III secre 65.9 28 0.00095 23.5 8.0 79 58-145 21-99 (116)
284 2nsz_A Programmed cell death p 64.5 23 0.0008 25.2 6.5 64 189-253 10-75 (129)
285 2d2s_A Exocyst complex compone 63.4 55 0.0019 26.2 9.2 91 261-354 23-119 (235)
286 1bpo_A Protein (clathrin); cla 62.2 85 0.0029 28.1 10.6 112 58-175 343-454 (494)
287 3jxi_A Vanilloid receptor-rela 60.9 3.9 0.00013 33.3 2.1 194 193-393 9-254 (260)
288 4aez_C MAD3, mitotic spindle c 60.9 60 0.0021 25.7 9.4 73 179-254 110-183 (223)
289 3eiq_C Programmed cell death p 59.2 87 0.003 27.0 17.7 66 258-324 219-286 (358)
290 2ion_A PDCD4, programmed cell 57.1 20 0.00068 26.5 5.2 64 189-253 12-77 (152)
291 3qil_A Clathrin heavy chain 1; 57.0 22 0.00076 24.9 4.9 56 43-102 31-86 (125)
292 2wvi_A Mitotic checkpoint seri 56.9 59 0.002 24.3 11.1 74 180-256 57-131 (164)
293 1k1a_A B-cell lymphoma 3-encod 56.7 47 0.0016 26.0 8.1 53 121-173 12-66 (241)
294 4a1g_A Mitotic checkpoint seri 56.1 58 0.002 24.0 10.3 70 182-254 64-134 (152)
295 2ijq_A Hypothetical protein; s 54.9 61 0.0021 24.1 7.4 60 83-143 36-103 (161)
296 2d2s_A Exocyst complex compone 54.4 82 0.0028 25.2 9.2 89 192-283 24-118 (235)
297 3eu9_A Huntingtin-interacting 54.1 30 0.001 27.2 6.4 16 90-105 16-31 (240)
298 3kea_A K1L; tropism, ANK repea 54.1 53 0.0018 26.9 8.1 15 265-279 167-181 (285)
299 1wgl_A TOLL-interacting protei 53.9 16 0.00055 21.8 3.4 37 111-149 21-57 (59)
300 1oai_A Nuclear RNA export fact 53.4 11 0.00038 22.5 2.6 25 57-81 33-57 (59)
301 1ug3_A EIF4GI, eukaryotic prot 53.2 28 0.00097 29.8 6.3 96 152-249 13-113 (339)
302 2keb_A DNA polymerase subunit 52.4 49 0.0017 22.1 5.8 32 133-164 27-58 (101)
303 3pvs_A Replication-associated 52.0 1.3E+02 0.0045 26.8 11.8 30 183-214 191-220 (447)
304 2zu6_B Programmed cell death p 51.8 1.1E+02 0.0036 25.7 9.8 181 189-371 6-247 (307)
305 3aji_A 26S proteasome non-ATPa 51.7 72 0.0024 24.8 8.3 16 90-105 13-28 (231)
306 1ug3_A EIF4GI, eukaryotic prot 51.6 1.1E+02 0.0039 26.0 11.1 15 361-375 272-286 (339)
307 4ets_A Ferric uptake regulatio 51.3 30 0.001 25.8 5.4 45 121-165 38-84 (162)
308 4gq2_M Nucleoporin NUP120; bet 50.3 1.2E+02 0.0041 30.3 11.0 109 86-200 816-950 (950)
309 2ion_A PDCD4, programmed cell 49.7 75 0.0026 23.4 8.4 22 261-282 14-35 (152)
310 2nsz_A Programmed cell death p 47.7 72 0.0025 22.6 9.8 24 260-283 11-34 (129)
311 3hra_A Ankyrin repeat family p 47.5 18 0.0006 27.7 3.9 14 160-173 12-25 (201)
312 3jxi_A Vanilloid receptor-rela 46.1 18 0.00062 29.1 3.9 57 49-106 7-72 (260)
313 3t8k_A Uncharacterized protein 45.8 53 0.0018 24.9 6.3 27 194-220 43-69 (186)
314 3t8k_A Uncharacterized protein 45.3 45 0.0016 25.3 5.9 64 227-290 41-108 (186)
315 1wdy_A 2-5A-dependent ribonucl 45.3 1.2E+02 0.004 24.3 11.8 116 51-174 9-126 (285)
316 3eyy_A Putative iron uptake re 43.6 89 0.003 22.6 6.9 34 237-270 33-66 (145)
317 2rfa_A Transient receptor pote 43.3 62 0.0021 25.2 6.7 21 301-321 161-181 (232)
318 3eyy_A Putative iron uptake re 42.7 87 0.003 22.7 6.7 60 281-342 9-68 (145)
319 2fe3_A Peroxide operon regulat 42.6 93 0.0032 22.5 8.2 58 212-270 13-70 (145)
320 2xig_A Ferric uptake regulatio 42.5 96 0.0033 22.6 8.7 58 212-270 18-75 (150)
321 4fke_A Aminopeptidase N; zinc 42.5 2.7E+02 0.0091 27.7 16.6 158 189-353 689-858 (909)
322 1wty_A Hypothetical protein TT 41.9 85 0.0029 21.8 6.3 75 272-353 4-79 (119)
323 2fe3_A Peroxide operon regulat 41.5 97 0.0033 22.4 7.6 45 121-165 27-71 (145)
324 4g8k_A 2-5A-dependent ribonucl 41.4 1.4E+02 0.0048 24.9 9.0 49 232-291 281-329 (337)
325 3bqo_A Telomeric repeat-bindin 40.7 36 0.0012 26.2 4.3 47 97-143 95-145 (211)
326 1mzb_A Ferric uptake regulatio 40.6 97 0.0033 22.0 6.9 35 236-270 33-67 (136)
327 1mzb_A Ferric uptake regulatio 38.9 1E+02 0.0035 21.9 7.0 35 307-341 34-68 (136)
328 2f6m_A Suppressor protein STP2 38.8 52 0.0018 20.1 3.9 44 329-373 5-48 (65)
329 2ijq_A Hypothetical protein; s 38.7 1.2E+02 0.0041 22.6 8.6 54 301-354 42-103 (161)
330 3e3v_A Regulatory protein RECX 38.5 1.3E+02 0.0043 22.8 9.8 50 238-288 50-99 (177)
331 2w57_A Ferric uptake regulatio 37.8 1.1E+02 0.0037 22.3 6.6 35 236-270 32-66 (150)
332 2dzn_A Probable 26S proteasome 37.5 1.3E+02 0.0045 23.0 7.8 16 90-105 9-24 (228)
333 3c1d_A Protein ORAA, regulator 37.3 1.2E+02 0.0042 22.3 11.6 50 238-289 47-96 (159)
334 4ets_A Ferric uptake regulatio 37.2 64 0.0022 24.0 5.3 71 60-131 13-85 (162)
335 2r9g_A AAA ATPase, central reg 36.7 1.5E+02 0.005 23.0 10.3 36 234-270 27-62 (204)
336 2xig_A Ferric uptake regulatio 36.6 1.2E+02 0.0041 22.0 8.0 60 282-342 18-77 (150)
337 2keb_A DNA polymerase subunit 36.2 96 0.0033 20.7 6.3 31 310-340 28-58 (101)
338 2o03_A Probable zinc uptake re 35.4 73 0.0025 22.5 5.2 37 128-164 23-59 (131)
339 3mwm_A ZUR, putative metal upt 35.4 76 0.0026 22.8 5.3 43 87-129 20-62 (139)
340 2rfa_A Transient receptor pote 34.0 1.6E+02 0.0055 22.7 8.3 22 231-252 161-182 (232)
341 3bge_A Predicted ATPase; struc 33.4 1.7E+02 0.0057 22.7 8.5 32 304-335 20-51 (201)
342 2w57_A Ferric uptake regulatio 32.5 1.1E+02 0.0038 22.2 5.9 46 121-166 22-68 (150)
343 2b7e_A PRE-mRNA processing pro 32.3 51 0.0018 19.6 3.1 29 238-266 3-31 (59)
344 1bpo_A Protein (clathrin); cla 32.1 2.8E+02 0.0096 24.9 9.9 141 235-388 343-483 (494)
345 3twr_A Tankyrase-2; ankyrin re 31.8 1.2E+02 0.0041 21.9 6.2 14 160-173 15-28 (165)
346 3pvs_A Replication-associated 31.5 2.8E+02 0.0095 24.7 14.4 30 218-249 191-220 (447)
347 3e3v_A Regulatory protein RECX 31.3 1.7E+02 0.0057 22.1 8.6 51 97-148 50-100 (177)
348 2qx5_A Nucleoporin NIC96; mRNA 31.3 3.4E+02 0.012 25.7 11.6 27 47-73 356-385 (661)
349 3ygs_P Procaspase 9; apoptosis 30.0 1.2E+02 0.0042 20.1 5.4 36 236-275 52-87 (97)
350 3f3f_C Nucleoporin NUP85; stru 29.8 2.4E+02 0.0082 26.0 8.5 74 305-380 495-568 (570)
351 2o03_A Probable zinc uptake re 29.5 1.1E+02 0.0038 21.5 5.4 46 297-342 16-61 (131)
352 3bqo_A Telomeric repeat-bindin 29.1 51 0.0018 25.4 3.5 21 369-389 125-145 (211)
353 3ctd_A Putative ATPase, AAA fa 29.0 2.1E+02 0.0071 22.4 9.1 33 304-336 48-80 (213)
354 4b4t_S RPN3, 26S proteasome re 28.8 3.4E+02 0.012 24.8 12.5 67 150-216 231-300 (523)
355 2f6m_A Suppressor protein STP2 28.8 1E+02 0.0034 18.8 4.1 45 294-339 5-49 (65)
356 3b7b_A Euchromatic histone-lys 28.4 76 0.0026 24.8 4.9 14 160-173 84-97 (237)
357 1bd8_A P19INK4D CDK4/6 inhibit 28.3 43 0.0015 24.1 3.1 12 93-104 12-23 (156)
358 3rjo_A Endoplasmic reticulum a 28.1 3.1E+02 0.01 24.1 21.9 141 188-338 199-352 (419)
359 1zl8_A LIN-7; heterodimer, alp 28.0 41 0.0014 19.1 2.1 19 58-76 7-25 (53)
360 4fke_A Aminopeptidase N; zinc 28.0 4.5E+02 0.016 26.0 18.1 161 225-392 690-862 (909)
361 2pnn_A Transient receptor pote 27.5 83 0.0028 25.4 5.0 18 90-107 20-37 (273)
362 3f3f_C Nucleoporin NUP85; stru 27.4 2.1E+02 0.0073 26.3 7.8 52 151-205 517-568 (570)
363 3ph0_C ASCG; type III secretio 26.9 91 0.0031 18.3 3.4 17 58-74 20-36 (61)
364 3mwm_A ZUR, putative metal upt 26.9 94 0.0032 22.3 4.6 12 274-285 31-42 (139)
365 2etb_A Transient receptor pote 26.8 95 0.0032 24.6 5.2 57 192-249 5-71 (256)
366 3ljn_A Hypothetical protein; a 26.8 2.1E+02 0.007 24.2 7.7 16 371-386 251-266 (364)
367 3kae_A CDC27, possible protein 25.9 2.2E+02 0.0074 21.6 8.2 77 268-350 45-138 (242)
368 2pnn_A Transient receptor pote 25.9 30 0.001 28.1 2.0 54 194-247 18-80 (273)
369 3utm_A Tankyrase-1; tankyrase, 25.7 2.8E+02 0.0097 22.9 10.3 13 277-289 228-240 (351)
370 2chq_A Replication factor C sm 25.2 2.8E+02 0.0096 22.7 14.1 20 270-289 241-261 (319)
371 1n11_A Ankyrin; clathrin, BAND 25.0 1.1E+02 0.0037 26.8 5.7 214 85-315 16-233 (437)
372 2yru_A Steroid receptor RNA ac 25.0 1.6E+02 0.0053 20.5 5.1 20 300-319 70-89 (118)
373 3kae_A CDC27, possible protein 24.8 2.3E+02 0.0078 21.5 14.9 39 356-394 201-241 (242)
374 2xdt_A Endoplasmic reticulum a 24.6 5.2E+02 0.018 25.6 15.0 159 154-319 684-851 (897)
375 3ltm_A Alpha-REP4; protein eng 24.4 2.3E+02 0.0079 21.4 22.4 10 226-235 100-109 (211)
376 2cwy_A Hypothetical protein TT 24.3 1.2E+02 0.0042 20.0 4.4 49 92-142 13-66 (94)
377 3k1s_A PTS system, cellobiose- 23.5 1.5E+02 0.005 20.3 4.7 18 90-107 32-49 (109)
378 3lxu_X Tripeptidyl-peptidase 2 22.8 2.6E+02 0.0088 29.1 8.1 33 127-161 1296-1328(1354)
379 3d9h_A CDNA FLJ77766, highly s 22.8 2.9E+02 0.0098 22.3 7.6 8 302-309 230-237 (285)
380 3eiq_C Programmed cell death p 22.3 3.7E+02 0.013 23.0 16.8 72 49-124 59-132 (358)
381 2rg8_A Programmed cell death p 22.2 1.3E+02 0.0044 22.4 4.7 59 293-353 12-72 (165)
382 3aji_A 26S proteasome non-ATPa 22.0 2.5E+02 0.0084 21.5 6.8 51 122-173 10-60 (231)
383 3qye_A TBC1 domain family memb 20.9 3.7E+02 0.013 22.5 9.1 107 277-386 209-319 (331)
384 3ljn_A Hypothetical protein; a 20.5 3.6E+02 0.012 22.6 8.0 92 155-256 22-116 (364)
385 2rg8_A Programmed cell death p 20.2 96 0.0033 23.1 3.6 25 189-213 13-37 (165)
386 4g8k_A 2-5A-dependent ribonucl 20.1 3.7E+02 0.013 22.2 13.1 20 50-69 28-47 (337)
387 3hzj_A Rabgap1L, RAB GTPase-ac 20.0 3.5E+02 0.012 22.4 7.5 96 207-302 175-273 (310)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-34 Score=267.08 Aligned_cols=206 Identities=20% Similarity=0.232 Sum_probs=155.4
Q ss_pred HHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------h
Q 015329 168 AIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR---------P 237 (409)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---------~ 237 (409)
.++.+.+++ ++.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +
T Consensus 8 ~~e~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344444333 33343333 335777788888888888888888888888888888888888888876654 4
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015329 238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAM 317 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 317 (409)
+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 015329 318 LGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN 374 (409)
Q Consensus 318 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 374 (409)
.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|+.|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888888888777653
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.3e-33 Score=257.26 Aligned_cols=206 Identities=14% Similarity=0.123 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC---------H
Q 015329 203 DKAYLVMVEMQKLGVKPD-VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR---------S 272 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~ 272 (409)
..+..+.+++.+.+.... ...++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345566677777776544 346889999999999999999999999999999999999999999997665 6
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329 353 MKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK 408 (409)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k 408 (409)
.+.|+.||..||+.|+.+|++.|+.++|.+++++|++.+..++..++..++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-31 Score=251.07 Aligned_cols=287 Identities=8% Similarity=-0.044 Sum_probs=226.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
+..++..++..|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|+.++|..+++++... .+.+..+++.++
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 380 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVG 380 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHH
Confidence 44455566666777777777777777776554 345566777777777777777777777665432 234677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW 273 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 273 (409)
..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|+++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHH
Confidence 9999999999999999988875433 67788999999999999999999999988764 557888889999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHhHHHH
Q 015329 274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPN--RKIYQTMIHYLCQEGDFNLAYI 347 (409)
Q Consensus 274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~ 347 (409)
+|.++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999887653 37888999999999999999999999988776 66777 7889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329 348 MCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK 408 (409)
Q Consensus 348 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k 408 (409)
+|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..|.. ...+..+..+|..
T Consensus 538 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 538 ALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHTTC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHhc
Confidence 999888765 5578899999999999999999999999998887655 4455666666654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-31 Score=251.88 Aligned_cols=352 Identities=9% Similarity=-0.083 Sum_probs=283.4
Q ss_pred ChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329 47 EPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG 126 (409)
Q Consensus 47 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (409)
+...+..+.+.|++++|+.+|+.+.... |+..++..++.+|.+.|++++|.++|+.+... ..+..++..++.+|.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHH
Confidence 3455667778899999999999998544 67788888999999999999999999988644 346778888888888
Q ss_pred hcCChHHHHHHHHHhhh-c--------------CCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCC----------
Q 015329 127 KAGMIKHAMDTFYDMHL-Y--------------GCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH---------- 181 (409)
Q Consensus 127 ~~~~~~~a~~~~~~m~~-~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------- 181 (409)
+.|++++|.++|+++.. . |.+.+..+|+.++.+|.+.|++++|..+|+++.....
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 88888888888885322 1 2234577888888888888888888887766533211
Q ss_pred -----------------------------------------------------------CCcCHHHHHHHHHHHHhcCCh
Q 015329 182 -----------------------------------------------------------IQFDIFSFNIVIKAFCEMGIL 202 (409)
Q Consensus 182 -----------------------------------------------------------~~~~~~~~~~ll~~~~~~g~~ 202 (409)
.+++..+++.++.+|.+.|++
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence 125777888888888999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 282 (409)
++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++.+.+.. +.+..+|+.++..|.+.|++++|.++|+++
T Consensus 322 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 322 IDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999988876543 77788888888889999999999998888653 567889999999999999999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 015329 283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVD 362 (409)
Q Consensus 283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 362 (409)
.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..
T Consensus 400 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 400 STMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 87642 3678999999999999999999999999987743 377889999999999999999999999998764 55788
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCC----CCC--chhHHHHHHhhcc
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRRVP----HFS--SNQLSAFKSILSK 408 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~--~~~~~~l~~~~~k 408 (409)
+|..+...|.+.|++++|.++++++.+..+ .+. ...+..+..+|.+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999987632 222 4566777776654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.1e-25 Score=203.28 Aligned_cols=341 Identities=10% Similarity=-0.008 Sum_probs=290.3
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK 132 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (409)
.+...+++++|...++...+.. +.+..+|..+...+.+.|++++|...|+++....+. ....+..+..++.+.|+++
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDME 118 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSS
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHH
Confidence 3456799999999999988776 467788999999999999999999999999876443 5667888999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015329 133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEM 212 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 212 (409)
+|.+.|+++.+.+ +.+...+..+...+...|++++|..+|+++.... +.+..+|..+...+.+.|++++|...|+++
T Consensus 119 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 119 GAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998764 3445677888889999999999999998776542 235778999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH
Q 015329 213 QKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV 292 (409)
Q Consensus 213 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 292 (409)
.+.+.. +...|..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|...|+++.+.+.. +..
T Consensus 196 l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 272 (388)
T 1w3b_A 196 VTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPD 272 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHH
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH
Confidence 986543 67888999999999999999999999998864 446788999999999999999999999999987533 577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 372 (409)
+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..++.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 89999999999999999999999998864 3478899999999999999999999999998764 566889999999999
Q ss_pred hCCChHHHHHHHHHHHhcCCCCCchhHHHHHHh
Q 015329 373 KNNQPCKANTIMALVQRRVPHFSSNQLSAFKSI 405 (409)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (409)
+.|++++|.+.++++.+..|... ..+..+-..
T Consensus 351 ~~g~~~~A~~~~~~a~~~~p~~~-~a~~~lg~~ 382 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRISPTFA-DAYSNMGNT 382 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCH-HHHHhHHHH
Confidence 99999999999999998876643 334444333
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.3e-25 Score=201.06 Aligned_cols=343 Identities=12% Similarity=0.034 Sum_probs=293.9
Q ss_pred HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329 52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (409)
..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+..+ .+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 34567899999999999998776 34455677777888999999999999999887644 3677888999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMV 210 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 210 (409)
++|++.|+++.+.. +.+..+|..+..++...|+++.|...+++.... .| +...+..+...+...|++++|.+.|+
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998764 445668999999999999999999999877654 34 35567888899999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC
Q 015329 211 EMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD 290 (409)
Q Consensus 211 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 290 (409)
++.+.... +..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+.... +
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 99986543 67899999999999999999999999999875 456788999999999999999999999999887432 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG 370 (409)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 370 (409)
..++..+...|.+.|++++|.+.|+++.+.+.. +..+|..+..++.+.|++++|.+.|+++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 788999999999999999999999999987433 67889999999999999999999999998864 6788999999999
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 015329 371 LKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILS 407 (409)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 407 (409)
+.+.|++++|.+.++++.+..|+. ...+..+..+|.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~ 350 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQ 350 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence 999999999999999999887654 444555555554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3e-23 Score=190.97 Aligned_cols=306 Identities=10% Similarity=0.002 Sum_probs=219.8
Q ss_pred CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329 78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL 157 (409)
Q Consensus 78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 157 (409)
.+...+..+...+.+.|++++|..+|+.+....+. +...+..+..+|...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45556666777777777777777777777654332 45666667777777777777777777776654 44566777777
Q ss_pred HHHHccCCHHHHHHHHHhcCccCCCCcC-H---HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 015329 158 KVLTESRDLKAIQAFLMEVPEKFHIQFD-I---FSFNIV------------IKAFCEMGILDKAYLVMVEMQKLGVKPDV 221 (409)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 221 (409)
.+|...|+++.|...|+++... .|+ . ..+..+ ...+...|++++|...|+++.+.... +.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 7777777777777777665433 233 2 344444 34477888888888888888775433 67
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH----
Q 015329 222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV---- 297 (409)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---- 297 (409)
.++..+..+|.+.|++++|..+|+.+.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 778888888888888888888888887653 456778888888888888888888888888765322 34444443
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 015329 298 --------IKGFCRSGHLDMAKKVYSAMLGRRLMPN-----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTI 364 (409)
Q Consensus 298 --------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 364 (409)
...|.+.|++++|...|+.+.+. .|+ ...|..+..++.+.|++++|...++++.+.. +.+...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 67788888888888888888765 333 3467777888888888888888888877653 4467788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 365 SALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 365 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
..+..+|...|++++|.+.++++.+..|..
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 888888888888888888888888877654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.3e-22 Score=186.59 Aligned_cols=335 Identities=14% Similarity=0.035 Sum_probs=271.5
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhc
Q 015329 49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKA 128 (409)
Q Consensus 49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (409)
.....+.+.|++++|+++|+.+.+.. +.+..++..+..++...|++++|...|+.+....+. ....+..+..+|.+.
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHc
Confidence 33445678899999999999998775 456788999999999999999999999999877544 577888899999999
Q ss_pred CChHHHHHHHHHhhhcCCCCCH---HhHHHH------------HHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 129 GMIKHAMDTFYDMHLYGCKRTV---KSLNAA------------LKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 129 ~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
|++++|.+.|+++.+.+ +.+. ..+..+ ...+...|+++.|..+++++.... +.+...+..+.
T Consensus 108 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 184 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRA 184 (450)
T ss_dssp TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 99999999999998764 2233 555555 444889999999999998876542 34678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH-----------
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR----------- 262 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----------- 262 (409)
..|.+.|++++|.++|+++.+... .+..+|..+...+...|++++|...|+.+.+.. +.+...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 378899999999999999999999999998763 3344445444
Q ss_pred -HHHHHhcCCHhHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 263 -IQHLVNKRRSWQANKLMGLMQRFGIEPD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC 337 (409)
Q Consensus 263 -l~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 337 (409)
...+.+.|++++|...|+++.+.... + ...+..+...+.+.|++++|...++.+.+.. +.+...|..+..+|.
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 78999999999999999999886422 2 4578889999999999999999999998763 236889999999999
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhCC-----ChHHHHHHHHH-HHhcCCCC
Q 015329 338 QEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG------------LKKNN-----QPCKANTIMAL-VQRRVPHF 394 (409)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~ 394 (409)
..|++++|...++++++.. +-+...+..+..+ |...| +.+++.+.+++ ..+..|+.
T Consensus 341 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998863 3456666666532 43444 56778888886 55565553
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-21 Score=182.94 Aligned_cols=236 Identities=11% Similarity=-0.044 Sum_probs=131.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 152 SLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAF 231 (409)
Q Consensus 152 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 231 (409)
++..+...+...|+++.|..++++.... .|+...+..+...|...|++++|...|+++.+.... +..++..+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 314 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHH
Confidence 4444555555555555555555444332 122444555555555555555555555555544322 444555555556
Q ss_pred HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329 232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (409)
...|++++|...++...+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...|...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666655543 234455555666666666666666666666554321 3455556666666666666666
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 015329 312 KVYSAMLGRRLM-PN----RKIYQTMIHYLCQ---EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTI 383 (409)
Q Consensus 312 ~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 383 (409)
..++.+.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666665543111 11 2356666666666 666666666666665543 34555666666666666666666666
Q ss_pred HHHHHhcCCCC
Q 015329 384 MALVQRRVPHF 394 (409)
Q Consensus 384 ~~~~~~~~~~~ 394 (409)
++++.+..|..
T Consensus 472 ~~~a~~~~~~~ 482 (514)
T 2gw1_A 472 FEESADLARTM 482 (514)
T ss_dssp HHHHHHHCSSH
T ss_pred HHHHHHhcccc
Confidence 66666665543
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=5.5e-20 Score=163.57 Aligned_cols=305 Identities=9% Similarity=-0.012 Sum_probs=224.8
Q ss_pred chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH
Q 015329 81 YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL 160 (409)
Q Consensus 81 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 160 (409)
..+..+...+...|++++|...|+.+....+. +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 44555666667777777777777776654332 45566666777777777777777777766553 33556667777777
Q ss_pred HccCCHHHHHHHHHhcCccCCCCc----CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 015329 161 TESRDLKAIQAFLMEVPEKFHIQF----DIFSFNIV------------IKAFCEMGILDKAYLVMVEMQKLGVKPDVITY 224 (409)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 224 (409)
...|+++.|...+++.... .| +...+..+ ...+...|++++|.+.|+++.+.... +...+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 157 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELR 157 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHH
Confidence 7777777777777655432 23 23333333 57788899999999999998876543 67888
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHH---------
Q 015329 225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN--------- 295 (409)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--------- 295 (409)
..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...+++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 888889999999999999999988764 557788888889999999999999999988876432 333332
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 296 ---LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR----KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL 368 (409)
Q Consensus 296 ---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 368 (409)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 2356688899999999999998876322 23 234557788889999999999999988764 55788899999
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 369 EGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
..+...|++++|.+.++++.+..|...
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999998886653
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=3.1e-20 Score=174.74 Aligned_cols=332 Identities=8% Similarity=-0.018 Sum_probs=232.1
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK 132 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (409)
.+.+.|++++|++.|+.+.+.+ +.+..++..+..++.+.|++++|.+.++.+....+. +...+..+..++...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHH
Confidence 3556677777777777777665 345566777777777777777777777777665433 4556666777777777777
Q ss_pred HHHHHHHHh-----------------------------------------------------------------------
Q 015329 133 HAMDTFYDM----------------------------------------------------------------------- 141 (409)
Q Consensus 133 ~a~~~~~~m----------------------------------------------------------------------- 141 (409)
+|.+.|+.+
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 777666422
Q ss_pred --------------------------------------hhcCCCCC--------HHhHHHHHHHHHccCCHHHHHHHHHh
Q 015329 142 --------------------------------------HLYGCKRT--------VKSLNAALKVLTESRDLKAIQAFLME 175 (409)
Q Consensus 142 --------------------------------------~~~~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~ 175 (409)
.+. .|+ ..++..+...+...|+++.|...+++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 221 122 12344555666677777777777766
Q ss_pred cCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC
Q 015329 176 VPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN 255 (409)
Q Consensus 176 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 255 (409)
.... .|+...+..+...+...|++++|.+.|+++.+.... +..+|..+...+...|++++|...++...+.. +.+
T Consensus 269 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 343 (537)
T 3fp2_A 269 SINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PEN 343 (537)
T ss_dssp HHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC
Confidence 6544 445667777777888888888888888887765433 56777778888888888888888888887754 345
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHH
Q 015329 256 LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR-----LMPNRKIYQ 330 (409)
Q Consensus 256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~ 330 (409)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...|+.+.+.. .......+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 66777788888888888888888888877642 256677778888888888888888888876542 111223344
Q ss_pred HHHHHHHHc----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329 331 TMIHYLCQE----------GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 331 ~li~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
.....+... |++++|...|++..+.. +.+...+..+..+|.+.|++++|.+.++++.+..|....
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 455666666 88888888888887754 556788888889999999999999999999888776543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3.2e-19 Score=158.60 Aligned_cols=310 Identities=14% Similarity=0.061 Sum_probs=252.7
Q ss_pred HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329 52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (409)
..+...|++++|++.|+.+.+.. +.+..++..+...+...|++++|...++.+....+. ....+..+...+...|++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCCh
Confidence 34667899999999999998876 456678889999999999999999999999876543 567888899999999999
Q ss_pred HHHHHHHHHhhhcCCC---CCHHhHHHH------------HHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHH
Q 015329 132 KHAMDTFYDMHLYGCK---RTVKSLNAA------------LKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF 196 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 196 (409)
++|.+.|++..+.. + .+...+..+ ...+...|+++.|..++++..... +.+...+..+...+
T Consensus 88 ~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 88 DEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECF 164 (359)
T ss_dssp HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHH
Confidence 99999999998764 2 244455444 578899999999999998876552 34677899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHH------------HHHH
Q 015329 197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFN------------VRIQ 264 (409)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~ll~ 264 (409)
...|++++|...+++..+.... +..++..+...+...|++++|...++...+.. +.+...+. .+..
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543 78899999999999999999999999998864 33333333 2366
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEPDE----VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG 340 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 340 (409)
.+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...++...+... .+..++..+...+...|
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcC
Confidence 788999999999999999887533 33 2355677889999999999999999988632 27889999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 341 DFNLAYIMCKDSMKKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 341 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 372 (409)
++++|.+.|++..+.. +-+...+..+..+..
T Consensus 321 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 321 MYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 9999999999998864 344556666555543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.7e-19 Score=156.37 Aligned_cols=293 Identities=9% Similarity=-0.119 Sum_probs=207.7
Q ss_pred CCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHH
Q 015329 77 IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAA 156 (409)
Q Consensus 77 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 156 (409)
+.+...+..+...+...|++++|.++++.+....+. +...+..++..+...|++++|..+++++.+.. +.+..+|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345566667777777778888888888877765433 34455556677777888888888888877654 4456677777
Q ss_pred HHHHHccC-CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329 157 LKVLTESR-DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN 235 (409)
Q Consensus 157 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 235 (409)
...+...| +++.|...+++..... +.+...|..+...+...|++++|.+.|++..+.... +...+..+...+...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 77777777 7777777776654332 224566777888888888888888888888775433 4556666777888888
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCcCHHHHHHHHHHHHhcCCH
Q 015329 236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFG--------IEPDEVTYNLVIKGFCRSGHL 307 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~ 307 (409)
++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. ...+...+..+...|...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 8888888888887763 4466777788888888888888888888776532 122356777788888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCCh
Q 015329 308 DMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL-KKNNQP 377 (409)
Q Consensus 308 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~ 377 (409)
++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 8888888887765332 56677788888888888888888888777654 44666777777766 345543
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.4e-19 Score=156.61 Aligned_cols=285 Identities=8% Similarity=-0.071 Sum_probs=241.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
+..++..+...+...|++++|.++|+++.+.. +.+...+..++..+...|+++.|..+++++.... +.+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 55667778888999999999999999998775 5566778888899999999999999998876652 23567888999
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329 194 KAFCEMG-ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS 272 (409)
Q Consensus 194 ~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 272 (409)
..+...| ++++|.+.|++..+.... +...|..+...+...|++++|...++...+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 9999999 999999999999987543 67789999999999999999999999999874 44567778899999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHhH
Q 015329 273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR--------LMPNRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 344 (409)
++|...+++..+... .+...+..+...+...|++++|...+++..+.. ...+..++..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999988753 367889999999999999999999999987641 13346789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329 345 AYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406 (409)
Q Consensus 345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (409)
|...+++..+.. +.+...+..+..++.+.|++++|.+.++++.+..|.. ...+..+..+|
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-TFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-hHHHHHHHHHH
Confidence 999999998764 5577889999999999999999999999999888655 33444444444
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.6e-19 Score=168.81 Aligned_cols=343 Identities=9% Similarity=-0.003 Sum_probs=280.5
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK 132 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (409)
.+...|++++|++.|+.+.+.+ |+..+|..+..++.+.|++++|.+.++.+....+. +...+..+..+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHH
Confidence 4567899999999999999887 68899999999999999999999999999877543 5678888999999999999
Q ss_pred HHHHHHHHhhhcCCCCC---------------------------------------------------------------
Q 015329 133 HAMDTFYDMHLYGCKRT--------------------------------------------------------------- 149 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~--------------------------------------------------------------- 149 (409)
+|.+.|+++...+ +++
T Consensus 91 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 9999999997765 211
Q ss_pred ----------------HHhHHHHHHHHHc---cCCHHHHHHHHHhcCc-----cCCC-------CcCHHHHHHHHHHHHh
Q 015329 150 ----------------VKSLNAALKVLTE---SRDLKAIQAFLMEVPE-----KFHI-------QFDIFSFNIVIKAFCE 198 (409)
Q Consensus 150 ----------------~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~ll~~~~~ 198 (409)
...+......+.. .|+++.|..++++... .... +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 2222333333333 7889999999987755 1011 2245678889999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329 199 MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL 278 (409)
Q Consensus 199 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 278 (409)
.|++++|...|+++.+.+.. ..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999986543 8888999999999999999999999998864 45778899999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-
Q 015329 279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW- 357 (409)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~- 357 (409)
++++.+.... +...+..+...|...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+..-
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 9999887543 5678888999999999999999999999876322 567889999999999999999999999876421
Q ss_pred CCC----HHHHHHHHHHHHh---CCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329 358 VPS----VDTISALLEGLKK---NNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406 (409)
Q Consensus 358 ~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 406 (409)
.++ ...+..+...+.. .|++++|.+.++++.+..|.. ...+..+..+|
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~ 459 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGLAQMK 459 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 112 4488899999999 999999999999999887654 33444444444
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=3.2e-19 Score=159.50 Aligned_cols=290 Identities=9% Similarity=-0.068 Sum_probs=215.9
Q ss_pred cCCCchhHHH-HHHHhhhCCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329 92 GARRFDYIEH-LLEHQKSLPQGR---REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK 167 (409)
Q Consensus 92 ~~~~~~~a~~-~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 167 (409)
..|++++|.+ .+++.....+.. +...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 4477788887 777655433221 23445567788888888888888888887764 456677888888888888888
Q ss_pred HHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHH
Q 015329 168 AIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT---------------LISAFY 232 (409)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------ll~~~~ 232 (409)
.|...+++..... +.+..++..+...|...|++++|.+.|+++.+.... +...+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 8888887665442 335677888888888889999999988888876433 2222221 233344
Q ss_pred HcCChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329 233 KDNRPEIGNGLWNLMVCKGCFP-NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 233 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 311 (409)
..|++++|...++.+.+..... +..++..+...|...|++++|...++++.+... .+...+..+...|...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998864211 578889999999999999999999999987742 36788899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhCCChHHH
Q 015329 312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP-----------SVDTISALLEGLKKNNQPCKA 380 (409)
Q Consensus 312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a 380 (409)
..|+++.+... .+...+..+..+|.+.|++++|...|+++++.. +. ...+|..+..+|...|+.++|
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999887642 367889999999999999999999999887642 11 268899999999999999999
Q ss_pred HHHHHHHH
Q 015329 381 NTIMALVQ 388 (409)
Q Consensus 381 ~~~~~~~~ 388 (409)
..++++..
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 98877543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=4.1e-19 Score=158.79 Aligned_cols=290 Identities=9% Similarity=-0.082 Sum_probs=230.6
Q ss_pred hcCChHHHHH-HHHHhhcCCCCCC--ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329 56 AERDPEKLFQ-LFKANAHNRIVIE--NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK 132 (409)
Q Consensus 56 ~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (409)
-.++++.|++ .|+......+-.| +...+..+...+.+.|++++|...++.+....+. +...+..+..+|...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3478888998 8887765542222 4567888999999999999999999999987543 6778888999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHH---------------HHHHHH
Q 015329 133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNI---------------VIKAFC 197 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~ 197 (409)
+|.+.|+++.+.+ +.+..++..+...+...|+++.|...+++......-.+ ..+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA--HLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG--GGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999998875 55788999999999999999999999987755432211 12211 233344
Q ss_pred hcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 015329 198 EMGILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQAN 276 (409)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 276 (409)
..|++++|...|+++.+..... +..++..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999864322 57889999999999999999999999998864 456789999999999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHHcCCHhHHH
Q 015329 277 KLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP----------NRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 277 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~ 346 (409)
..++++.+... .+...+..+...|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|.
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999988753 367889999999999999999999999987652211 2688999999999999999999
Q ss_pred HHHHH
Q 015329 347 IMCKD 351 (409)
Q Consensus 347 ~~~~~ 351 (409)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88764
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=7.5e-18 Score=158.43 Aligned_cols=304 Identities=12% Similarity=0.018 Sum_probs=183.1
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHH
Q 015329 80 KYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKV 159 (409)
Q Consensus 80 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 159 (409)
...+..+...+.+.|++++|...|+++....+. +...+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 355777889999999999999999999877543 67888889999999999999999999998876 5577889999999
Q ss_pred HHccCCHHHHHHHHHhcCccCCC-----------------------------------CcCHH-----------------
Q 015329 160 LTESRDLKAIQAFLMEVPEKFHI-----------------------------------QFDIF----------------- 187 (409)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~----------------- 187 (409)
+...|+++.|...++.+....+. .|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999998887433111000 00000
Q ss_pred -------------HHHHHHHHHH--------hcCChhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCChhh
Q 015329 188 -------------SFNIVIKAFC--------EMGILDKAYLVMVEMQKLGVKPD-------VITYTTLISAFYKDNRPEI 239 (409)
Q Consensus 188 -------------~~~~ll~~~~--------~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~~~~~~~~~~ 239 (409)
....+...+. ..|++++|..+|+++.+.... + ..++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 0111111110 113455566666665554322 1 1234444455555566666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
|...++...+. .|+...+..+...+...|++++|...++++.+.... +..++..+...|...|++++|...++++.+
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666554 233555555555555666666666666665554322 445555555566666666666666665555
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 320 RRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 320 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 339 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 339 LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 4222 34455555556666666666666666555543 3344455555566666666666666665555443
No 19
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=175.11 Aligned_cols=114 Identities=10% Similarity=0.108 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 015329 222 ITYTTLISAFYKDNRPEIGNGLWNLMV---CKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI 298 (409)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 298 (409)
.||+++|++||+.|++++|.++|+.|. ..|+.||..|||++|.+||+.|++++|.++|++|.+.|+.||..|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345555555555555555555554433 22444555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 299 KGFCRSGHL-DMAKKVYSAMLGRRLMPNRKIYQTMIHY 335 (409)
Q Consensus 299 ~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~ 335 (409)
.++++.|+. ++|.++|++|.+.|+.||..+|++++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 555554442 3444555555555555555555544443
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=8.4e-19 Score=156.67 Aligned_cols=267 Identities=10% Similarity=-0.111 Sum_probs=206.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK 194 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 194 (409)
...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+...|+++.|...|++..... +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3446667888888899999999999888765 5567788888889999999988888887765542 235778888999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CCHhhHHHHHH
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVK---------PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PNLATFNVRIQ 264 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~ 264 (409)
.|...|++++|.+.|+++.+.... .....+..+...+...|++++|...++++.+.... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998874311 01223344577888899999999999999886421 16788999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 344 (409)
.|...|++++|...|+++.+... .+..+|..+..+|...|++++|...|+++.+.... +..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988753 36889999999999999999999999999876322 57889999999999999999
Q ss_pred HHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 015329 345 AYIMCKDSMKKN---WV--------PSVDTISALLEGLKKNNQPCKANTIMAL 386 (409)
Q Consensus 345 a~~~~~~m~~~~---~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 386 (409)
|...|+++++.. .. .+...|..+..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999887642 01 1357889999999999999998887765
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=2.3e-18 Score=153.79 Aligned_cols=270 Identities=10% Similarity=-0.087 Sum_probs=209.0
Q ss_pred CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329 78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL 157 (409)
Q Consensus 78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 157 (409)
.+...+..+...+.+.|++++|...|+.+....+. +...+..+...|...|++++|++.|++..+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34556778888888889999999999988876543 57777888888889999999999999888764 45677888888
Q ss_pred HHHHccCCHHHHHHHHHhcCccCCCCc--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 015329 158 KVLTESRDLKAIQAFLMEVPEKFHIQF--------DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PDVITYTTLI 228 (409)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll 228 (409)
..|...|+++.|...+++......-.+ ....+..+...+...|++++|.+.|+++.+.... .+..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 899999999888888877654311000 1223445678899999999999999999986432 2678899999
Q ss_pred HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329 229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD 308 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (409)
..+...|++++|...|++..+.. +.+..+|..+..+|...|++++|...|+++.+.... +..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998864 557889999999999999999999999999887432 5888999999999999999
Q ss_pred HHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 309 MAKKVYSAMLGRRLM-----------PNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 309 ~a~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
+|...|+++.+.... .+..+|..+..++...|+.+.+.++..+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998765211 1357789999999999999998887664
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=176.38 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQK---LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
..+||++|++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45677777777777777777777766553 366777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCH-hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329 263 IQHLVNKRRS-WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS 304 (409)
Q Consensus 263 l~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 304 (409)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 7777777663 56677777777777777777777666555443
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=3.7e-17 Score=140.74 Aligned_cols=255 Identities=11% Similarity=0.063 Sum_probs=158.8
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC
Q 015329 124 LYGKAGMIKHAMDTFYDMHLYGCKRT--VKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI 201 (409)
Q Consensus 124 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 201 (409)
-....|++..|+..++..... .|+ ......+.++|...|+++.|...++. .-+|+..++..+...+...|+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCc
Confidence 344566777777766665433 222 23444556677777777666665422 124456666667777777777
Q ss_pred hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329 202 LDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMG 280 (409)
Q Consensus 202 ~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 280 (409)
.++|++.++++...+..| +...+..+...+...|++++|++.++. +.+...+..+...+.+.|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777776655434 344455555667777777777777765 3456666777777777777777777777
Q ss_pred HHHHcCCCcCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 015329 281 LMQRFGIEPDEVTY---NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW 357 (409)
Q Consensus 281 ~~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 357 (409)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++.++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 776653 332211 112233334467777777777776652 3366667777777777777777777777766654
Q ss_pred CCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHhcCCCCC
Q 015329 358 VPSVDTISALLEGLKKNNQPCK-ANTIMALVQRRVPHFS 395 (409)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~ 395 (409)
+-+..++..++..+...|+.++ +.++++++.+..|+.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 4466677777777777777654 4567777777766653
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=8.2e-18 Score=147.56 Aligned_cols=154 Identities=10% Similarity=-0.060 Sum_probs=79.8
Q ss_pred HHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 015329 231 FYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMA 310 (409)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 310 (409)
+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 334445555555555554432 22444555555555555555555555555544431 1344555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhCCChHH
Q 015329 311 KKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP-----------SVDTISALLEGLKKNNQPCK 379 (409)
Q Consensus 311 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~ 379 (409)
...++++.+... .+...+..+...|...|++++|.+.++++.+..-.. +...+..+..++.+.|+.++
T Consensus 226 ~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 555555554321 134555555555666666666666665554432000 24555556666666666666
Q ss_pred HHHHHHHH
Q 015329 380 ANTIMALV 387 (409)
Q Consensus 380 a~~~~~~~ 387 (409)
|.+++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 66665543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.1e-17 Score=146.65 Aligned_cols=266 Identities=9% Similarity=-0.054 Sum_probs=221.5
Q ss_pred ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329 79 NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK 158 (409)
Q Consensus 79 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 158 (409)
+...+......+...|++++|..+++.+....+. +...+..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 5566778889999999999999999999876543 66778889999999999999999999998875 557788999999
Q ss_pred HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 015329 159 VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIV--------------IK-AFCEMGILDKAYLVMVEMQKLGVKPDVIT 223 (409)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 223 (409)
.+...|+++.|...+++....... +...+..+ .. .+...|++++|.+.++++.+.... +..+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ--YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT--TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence 999999999999999877654322 22233333 22 377889999999999999986543 7889
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 015329 224 YTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR 303 (409)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (409)
+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...|..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 45678899999999999999999999999988753 367889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 304 SGHLDMAKKVYSAMLGRRLMP-----------NRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 304 ~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
.|++++|.+.++++.+..... +...|..+..++...|++++|..++++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999988763221 467889999999999999999988764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=9.6e-17 Score=138.11 Aligned_cols=251 Identities=10% Similarity=-0.020 Sum_probs=143.8
Q ss_pred HhhhhcCChHHHHHHHHHhhcCCCCCCcc--chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329 52 VKLKAERDPEKLFQLFKANAHNRIVIENK--YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG 129 (409)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (409)
+...-.|+++.|++.++...... |+. .....+..++...|+++.|...++. . ..+....+..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~---p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS---PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS---HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccCC---chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 33445577777777776654433 332 2444556677777777776654433 1 2223445555666667777
Q ss_pred ChHHHHHHHHHhhhcCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 015329 130 MIKHAMDTFYDMHLYGCKR-TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLV 208 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 208 (409)
+.++|++.++++...++.| +...+..+...+...|++++|...+++ +.+...+..++..|.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777766655434 344455555666777777777777643 23555666666677777777777777
Q ss_pred HHHHHhCCCCCCHHHH---HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 209 MVEMQKLGVKPDVITY---TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 209 ~~~m~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77766543 332111 11222233345666666666666655 2445566666666666666666666666666555
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 015329 286 GIEPDEVTYNLVIKGFCRSGHLDM-AKKVYSAMLGR 320 (409)
Q Consensus 286 ~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 320 (409)
... +..++..++..+...|+.++ +.++++++.+.
T Consensus 230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 322 45555566666666666544 34555555544
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.7e-18 Score=151.42 Aligned_cols=282 Identities=9% Similarity=-0.002 Sum_probs=129.2
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM 135 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (409)
+.++.++|.++++.+ +++.+|..++.++.+.|++++|++.|.+. .+...|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 557789999999988 22348889999999999999999999653 35667888888999999999999
Q ss_pred HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015329 136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL 215 (409)
Q Consensus 136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 215 (409)
..++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 977766653 4557788889999999999988888773 256669999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHH
Q 015329 216 GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN 295 (409)
Q Consensus 216 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 295 (409)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 47889999999999999999999888 27889999999999999999996555442 22333455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHhCCCCC------CHHHHHHH
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE--GDFNLAYIMCKDSMKKNWVP------SVDTISAL 367 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~------~~~~~~~l 367 (409)
.++..|.+.|.+++|..+++...... .-....|+.+.-+|++- +++.+.++.|.. +-+++| +...|.-+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHH
Confidence 68889999999999999999888665 44677788887777764 344455554431 223333 34568888
Q ss_pred HHHHHhCCChHHHHHH
Q 015329 368 LEGLKKNNQPCKANTI 383 (409)
Q Consensus 368 ~~~~~~~g~~~~a~~~ 383 (409)
.-.|...++++.|...
T Consensus 289 ~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 289 VFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhchHHHHHHH
Confidence 8888888999888763
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=4.6e-14 Score=131.06 Aligned_cols=305 Identities=11% Similarity=0.022 Sum_probs=187.6
Q ss_pred cCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhc----CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh----c
Q 015329 57 ERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAG----ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK----A 128 (409)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 128 (409)
.+++++|++.|+...+.+ +..++..+...+.. .+++++|.++|++....+ +...+..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 577888888888877665 34566667777776 778888888888776553 44555556677776 6
Q ss_pred CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh----cC
Q 015329 129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE----SRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE----MG 200 (409)
Q Consensus 129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g 200 (409)
+++++|++.|++..+.| +...+..+...|.. .++.+.|..+|+...+. + +...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhcCCCCCc
Confidence 77888888888777654 45566666666765 66777777777655443 2 55666666677766 67
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCH
Q 015329 201 ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN----KRRS 272 (409)
Q Consensus 201 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~ 272 (409)
++++|.++|++..+.| +...+..+...|.. .+++++|...|+...+.| +...+..+-..|.. .++.
T Consensus 202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence 7777777777776653 44555566666654 566777777777666554 34444555555555 5666
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhH
Q 015329 273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS-----GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG---DFNL 344 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~ 344 (409)
++|...|++..+.| +...+..+...|... +++++|...|++..+.| +...+..+...|...| ++++
T Consensus 276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence 66666666665543 333444455555554 56666666666655543 3344444555554433 4555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhc
Q 015329 345 AYIMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANTIMALVQRR 390 (409)
Q Consensus 345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 390 (409)
|.++|++..+.| +...+..+...|.. .++.++|.+.+++..+.
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 555555555542 44455555555555 45555555555555544
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.7e-14 Score=131.00 Aligned_cols=308 Identities=11% Similarity=-0.023 Sum_probs=259.4
Q ss_pred cCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhc----CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh----c
Q 015329 57 ERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAG----ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK----A 128 (409)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 128 (409)
.+++++|++.|+...+.+ +...+..+...+.. .+++++|.++|+.....+ +...+..|...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 689999999999998776 45566777788877 789999999999988764 45666678888887 8
Q ss_pred CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh----cC
Q 015329 129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE----SRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE----MG 200 (409)
Q Consensus 129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g 200 (409)
+++++|++.|++..+.| +...+..+...|.. .++.+.|..+++...+. + +...+..+...|.. .+
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCC
Confidence 89999999999998864 67788888888887 89999999999776543 2 56778888888886 88
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-----CC
Q 015329 201 ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK-----RR 271 (409)
Q Consensus 201 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~ 271 (409)
++++|.++|++..+.| +...+..+...|.. .+++++|...|+...+.| +...+..+...|... ++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 9999999999998864 55677777788877 899999999999998875 566777788888887 89
Q ss_pred HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhH
Q 015329 272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSG---HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNL 344 (409)
Q Consensus 272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 344 (409)
+++|...|++..+.| +...+..+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999998875 4566777777787766 7899999999998873 67888899999988 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhcCCC
Q 015329 345 AYIMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 393 (409)
|.++|++..+.| +...+..+...|.+ .++.++|.+.+++..+.++.
T Consensus 386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 386 AAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999999876 57788889999988 89999999999999988854
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.3e-13 Score=129.45 Aligned_cols=185 Identities=8% Similarity=0.030 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCChh-------hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 015329 204 KAYLVMVEMQKLGVKPDVITYTTLISAFYK-------DNRPE-------IGNGLWNLMVCKGCFPNLATFNVRIQHLVNK 269 (409)
Q Consensus 204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (409)
.+..+|++...... -+...|..++..+.+ .|+++ +|..+|+...+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 44455555554322 245556666665554 57765 6777777776522234566777777777777
Q ss_pred CCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHhHHH
Q 015329 270 RRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHY-LCQEGDFNLAY 346 (409)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~ 346 (409)
|++++|..+|+++.+. .|+ ...|...+..+.+.|++++|.++|++..+.... +...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 7777777777777765 332 246777777777777777777777777765211 22333222222 23467777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 347 IMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.+|+..++.. +.+...|..++..+.+.|+.++|..+|++..+..+.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 7777776643 345667777777777777777777777777766543
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.2e-16 Score=139.32 Aligned_cols=267 Identities=6% Similarity=0.035 Sum_probs=136.1
Q ss_pred CCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHH
Q 015329 43 DKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIM 122 (409)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (409)
.+..|..+.....+.+++++|++.|.+. +|..+|..++.++...|++++|+..++...+. .+++.+...++
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 3457888888888999999999999653 57779999999999999999999988877764 33467788899
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCCh
Q 015329 123 MLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL 202 (409)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 202 (409)
.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccH
Confidence 99999999999998884 477789999999999999999999999655 3799999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 282 (409)
++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|++++|..+++..
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998 2789999999999999999999655543 2234444567999999999999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHhHHHHH
Q 015329 283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMP------NRKIYQTMIHYLCQEGDFNLAYIM 348 (409)
Q Consensus 283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~a~~~ 348 (409)
.... +-....|+-|.-.|++- ++++..+-++...+. .+.| +...|..++..|...++++.|...
T Consensus 234 L~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 8665 44677888887777765 344444444433332 3333 456688999999999999988764
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.7e-15 Score=124.51 Aligned_cols=201 Identities=13% Similarity=-0.008 Sum_probs=150.7
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
+++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345667777888888888888888888888876543 67777888888888888888888888887764 4466777778
Q ss_pred HHHHHhc-----------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 263 IQHLVNK-----------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQT 331 (409)
Q Consensus 263 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 331 (409)
..++... |++++|...+++..+.... +...+..+...|...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 9999999999998887433 57788888889999999999999999988877 58888899
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
+..+|...|++++|...|++.++.. +.+...+..+...+.+.|++++|.+.+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999988764 55778888888999999999999998887654
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-15 Score=127.16 Aligned_cols=225 Identities=13% Similarity=0.062 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHH
Q 015329 117 FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF 196 (409)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 196 (409)
.+..+...+...|++++|++.|++..+.. .+..++..+...+...|+++.|...+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~----------------------- 61 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTL----------------------- 61 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHH-----------------------
Confidence 44445555556666666666666555544 44445555555555555555555554
Q ss_pred HhcCChhHHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 197 CEMGILDKAYLVMVEMQKLGVK--PD----VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
++..+.... ++ ..++..+...+...|++++|...|+...+.. |+. ..+...|
T Consensus 62 -------------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~ 119 (258)
T 3uq3_A 62 -------------NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLR 119 (258)
T ss_dssp -------------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHH
T ss_pred -------------HHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHh
Confidence 444332110 01 2444444444555555555555555544431 221 2344445
Q ss_pred CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329 271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK 350 (409)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 350 (409)
++++|...++.+..... .+...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...++
T Consensus 120 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55666666665555421 13445555666666666666666666666554322 45566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 351 DSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 351 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
+.++.. +.+...+..+..++.+.|++++|.+.++++.+..
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 666543 3445666666667777777777777776666555
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=1.5e-14 Score=121.75 Aligned_cols=206 Identities=11% Similarity=0.022 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
...+..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 566888888999999999999999999876433 67888889999999999999999999998864 4477888889999
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329 266 LVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 344 (409)
|...|++++|..+++++.+.+..| +...+..+...|...|++++|.+.++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998743344 566788888999999999999999999887643 267888999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 345 AYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
|...++++.+.. +.+...+..+...+.+.|+.++|.++++++.+..|...
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999999988754 56778888889999999999999999999998876643
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.7e-14 Score=121.71 Aligned_cols=231 Identities=13% Similarity=0.006 Sum_probs=141.2
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHH
Q 015329 80 KYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKV 159 (409)
Q Consensus 80 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 159 (409)
...+..+...+...|++++|...++.+.... .+...+..+..+|...|++++|.+.|++..+.. |+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMR-------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccc--------
Confidence 4567888999999999999999999998776 578888889999999999999999999987542 1100
Q ss_pred HHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329 160 LTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI 239 (409)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 239 (409)
........++..+...|...|++++|.+.|++..+.. |+. ..+.+.|++++
T Consensus 73 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 73 --------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEK 123 (258)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHH
Confidence 0000012334444445555555555555555554421 221 22334455555
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
|...++.+.... +.+...+..+...+...|++++|...++++.+.... +...+..+...|...|++++|...++...+
T Consensus 124 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555432 223445555555666666666666666666554322 455566666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 320 RRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 320 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
... .+...|..+..++...|++++|...+++..+
T Consensus 202 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 202 KDP-NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 432 1455566666666666666666666665554
No 36
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=3.9e-14 Score=116.85 Aligned_cols=207 Identities=9% Similarity=-0.052 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
+...+..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|...++...+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4667888888899999999999999988876433 57788888888999999999999999988764 456778888888
Q ss_pred HHHhc-CCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 265 HLVNK-RRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 265 ~~~~~-~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 99999 99999999999988733334 3567888888999999999999999998876332 577888899999999999
Q ss_pred hHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 343 NLAYIMCKDSMKKNWV-PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 343 ~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+..|...
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 99999999888754 3 5777788888888999999999999999887776543
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=3e-13 Score=133.24 Aligned_cols=316 Identities=12% Similarity=0.056 Sum_probs=178.9
Q ss_pred hHHHHhhhhcCChHHHHHHHHHhhcCCC-CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329 48 PPALVKLKAERDPEKLFQLFKANAHNRI-VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG 126 (409)
Q Consensus 48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (409)
+.....+...|.+.+|+++++.+...+. +.-+...-+.++...++. +..+..+..+..... + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 4556677789999999999999985431 122333444455444443 223333333332211 0 112333444
Q ss_pred hcCChHHHHHHHHHhhhcC---------------------CCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC
Q 015329 127 KAGMIKHAMDTFYDMHLYG---------------------CKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD 185 (409)
Q Consensus 127 ~~~~~~~a~~~~~~m~~~~---------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (409)
..|.+++|.++|++..... -.-+..+|..+..++...|++++|...|... -|
T Consensus 1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD 1133 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD 1133 (1630)
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC
Confidence 4444444444444431000 0012445556666666666666665555221 14
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
...|..++.+|.+.|++++|.++|....+.. ++....+.++.+|++.+++++..... + .++...|..+...
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 4555556666666666666666665555432 22222233555566665555322221 1 2344455556666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329 266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA 345 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 345 (409)
|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.. +..+|..+-.+|...|++..|
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHH
Confidence 66666666666666653 256666666666666666666666542 456666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329 346 YIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK 408 (409)
Q Consensus 346 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k 408 (409)
...... +..++..+..++..|.+.|.+++|+++++.....+ +.....+..|-..|+|
T Consensus 1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 654332 34567788899999999999999999999888777 4445566666666665
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=1.1e-14 Score=121.80 Aligned_cols=207 Identities=11% Similarity=0.029 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
....|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777788888889999999999988876433 67788888888888999999999998888764 446778888888
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 344 (409)
.+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 88999999999999998887653 3677788888889999999999999998877633 367788888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329 345 AYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+..|....
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 999999887764 456778888889999999999999999999888766543
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=4.7e-13 Score=114.16 Aligned_cols=223 Identities=8% Similarity=-0.072 Sum_probs=126.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 152 SLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE----MGILDKAYLVMVEMQKLGVKPDVITYTTL 227 (409)
Q Consensus 152 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 227 (409)
++..+...+...|+++.|..+|++..+ +-+...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 344444444444455444444443322 1123344445555555 555666666665555543 44555555
Q ss_pred HHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329 228 ISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN----KRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299 (409)
Q Consensus 228 l~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 299 (409)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 566666666666655543 44555555555655 666666666666665544 3444555555
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 300 GFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL 371 (409)
Q Consensus 300 ~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 371 (409)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 5555 666666666666666553 34555666666666 666666666666666653 255566666666
Q ss_pred Hh----CCChHHHHHHHHHHHhcCCC
Q 015329 372 KK----NNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 372 ~~----~g~~~~a~~~~~~~~~~~~~ 393 (409)
.+ .++.++|.+.+++..+.+++
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 66 66677777777666666543
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.5e-14 Score=131.24 Aligned_cols=337 Identities=8% Similarity=-0.095 Sum_probs=213.6
Q ss_pred hhhhcCChHHHHHHHHHhhcC----CC---CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhC----C---CCCChhHH
Q 015329 53 KLKAERDPEKLFQLFKANAHN----RI---VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL----P---QGRREGFI 118 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~ 118 (409)
.....|+.++|++.|+...+. .+ -+....+|..+...|...|++++|...+++.... . ......++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 345679999999999877532 10 1123456888999999999999999998876532 1 11124556
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH---HccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 119 MRIMMLYGK--AGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL---TESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 119 ~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
..+..++.. .+++++|++.|++..+.. +-+...+..+..++ ...++.+.+...+++..+.. +.+...+..+.
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~ 216 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHH
Confidence 555555554 457899999999988764 33445555554443 34566666666665543331 22455565555
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 015329 194 KAFCE----MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK 269 (409)
Q Consensus 194 ~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (409)
..+.. .|++++|.+.+++....... +..++..+...|...|++++|...+++..+.. +-+..++..+..+|...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 55444 46788899999988876543 67788889999999999999999999988763 34556666665555432
Q ss_pred -------------------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--H
Q 015329 270 -------------------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRK--I 328 (409)
Q Consensus 270 -------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~ 328 (409)
+..+.|...+++..+.... +...+..+...|...|++++|.+.|++..+....+... .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 2356677777777665422 45567788889999999999999999988764433221 2
Q ss_pred HHHHHH-HHHHcCCHhHHHHHHHHHHhCC-----------------------CCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329 329 YQTMIH-YLCQEGDFNLAYIMCKDSMKKN-----------------------WVPSVDTISALLEGLKKNNQPCKANTIM 384 (409)
Q Consensus 329 ~~~li~-~~~~~g~~~~a~~~~~~m~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 384 (409)
+..+.. .....|++++|+..|++.++.. -+.+..+|..+..+|...|++++|++.+
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 222222 2346788999998888776532 1345678888999999999999999999
Q ss_pred HHHHhcCCCCC
Q 015329 385 ALVQRRVPHFS 395 (409)
Q Consensus 385 ~~~~~~~~~~~ 395 (409)
++..+.++..+
T Consensus 454 ~kALe~~~~~p 464 (472)
T 4g1t_A 454 ERGLESGSLIP 464 (472)
T ss_dssp -----------
T ss_pred HHHHhcCCCCC
Confidence 99998776554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=6.2e-14 Score=119.41 Aligned_cols=161 Identities=11% Similarity=-0.025 Sum_probs=66.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc--CHHHHHHHHHHHHh
Q 015329 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF--DIFSFNIVIKAFCE 198 (409)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 198 (409)
....+...|++++|++.|++..+.. +.+...+..+...+...|+++.|...+++.... +..+ ....|..+...|..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHH
Confidence 3344444455555555554444332 122223444444444444444444444333221 1111 12234444455555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329 199 MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL 278 (409)
Q Consensus 199 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 278 (409)
.|++++|++.|++..+.... +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555443222 33444444444444444444444444444331 22333333333122222344444444
Q ss_pred HHHHHHc
Q 015329 279 MGLMQRF 285 (409)
Q Consensus 279 ~~~~~~~ 285 (409)
|+++.+.
T Consensus 165 ~~~a~~~ 171 (272)
T 3u4t_A 165 FVKVLEL 171 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.6e-14 Score=117.47 Aligned_cols=196 Identities=10% Similarity=-0.059 Sum_probs=96.9
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 149 TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLI 228 (409)
Q Consensus 149 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 228 (409)
+...+..+...+.+.|++++|...+++..... +.+...+..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 33444444444444444444444444332221 113344444555555555555555555555543322 344444455
Q ss_pred HHHHHc-----------CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH
Q 015329 229 SAFYKD-----------NRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV 297 (409)
Q Consensus 229 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 297 (409)
..+... |++++|+..+++..+.. +-+...+..+..++...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 66666666666665542 2344555556666666666666666666666555 355556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 298 IKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
..+|...|++++|...|++..+.... +...+..+...+...|++++|.+.+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66666666666666666666554222 455556666666666666666666554
No 43
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=1.5e-12 Score=122.18 Aligned_cols=205 Identities=9% Similarity=-0.006 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329 185 DIFSFNIVIKAFCE-------MGILD-------KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 185 ~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 45566666666665 68987 89999999986212236888999999999999999999999999985
Q ss_pred CCCCC-H-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015329 251 GCFPN-L-ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK-GFCRSGHLDMAKKVYSAMLGRRLMPNRK 327 (409)
Q Consensus 251 ~~~~~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 327 (409)
.|+ . ..|...+..+.+.|+.++|..+|++..+.... +...|..... .+...|+.++|..+|+...+... -+..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~ 426 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPE 426 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHH
Confidence 444 2 58888999999999999999999999876322 2333332222 23468999999999999887632 2678
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 328 IYQTMIHYLCQEGDFNLAYIMCKDSMKKN-WVP--SVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.|..++..+.+.|+.++|..+|++.+..+ ..| ....|...+......|+.+.+.++.+++.+..|.
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 89999999999999999999999998864 233 2458888888889999999999999999988874
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.4e-13 Score=115.81 Aligned_cols=200 Identities=12% Similarity=0.013 Sum_probs=124.5
Q ss_pred chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH
Q 015329 81 YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL 160 (409)
Q Consensus 81 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 160 (409)
..+..+...+...|++++|.+.++.+....+. +...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44566667777777778887777777655332 45566667777777777777777777776653 33555666666666
Q ss_pred HccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329 161 TESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI 239 (409)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 239 (409)
...|++++|..++++... .+..| +...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 667777666666665544 22223 3445666666666666666666666666654322 45555666666666666666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
|...++...+.. +.+...+..+...+...|+.++|..+++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666665542 334455555556666666666666666666554
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=3.8e-14 Score=120.87 Aligned_cols=248 Identities=10% Similarity=-0.056 Sum_probs=179.3
Q ss_pred HhcCChHHHHHHHHHhhhcCC---CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCCh
Q 015329 126 GKAGMIKHAMDTFYDMHLYGC---KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL 202 (409)
Q Consensus 126 ~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 202 (409)
...|++++|++.|+++.+... +.+..++..+...+...|+++.|...+++..... +.+..++..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 456889999999999887532 1245678888888899999999999887765542 23577888888899999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 282 (409)
++|.+.|++..+.... +..++..+...+...|++++|...++.+.+.. |+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999998876433 57788888888999999999999999888753 44444455555667778899999999777
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 015329 283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP---NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP 359 (409)
Q Consensus 283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 359 (409)
..... ++...+ .++..+...++.++|...+.......... +...+..+...|...|++++|...|++.++.. |
T Consensus 171 ~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 66532 233333 36666777788888888888877652211 14677888888888999999999998888763 4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHH
Q 015329 360 SVDTISALLEGLKKNNQPCKANTIM 384 (409)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~a~~~~ 384 (409)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 223345666778888877665
No 46
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.6e-12 Score=120.09 Aligned_cols=311 Identities=8% Similarity=-0.108 Sum_probs=220.5
Q ss_pred CCccchHHHHHHHHhcCCCchhHHHHHHHhhhC--------CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC---
Q 015329 77 IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL--------PQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG--- 145 (409)
Q Consensus 77 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--- 145 (409)
......|+.+...+...|++++|++.|++.... .......+|..+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567999999999999999999999876532 112235577889999999999999999999875421
Q ss_pred ---CC-CCHHhHHHHHHHHHcc--CCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHhC
Q 015329 146 ---CK-RTVKSLNAALKVLTES--RDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKA---FCEMGILDKAYLVMVEMQKL 215 (409)
Q Consensus 146 ---~~-~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~ 215 (409)
.. ....++.....++... +++++|...|++.... .|+ ...+..+..+ +...++.++|++.|++..+.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 11 2345666666666554 4679999999876554 333 4444444444 45567888999999998876
Q ss_pred CCCCCHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329 216 GVKPDVITYTTLISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE 291 (409)
Q Consensus 216 g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 291 (409)
... +..++..+...+.. .+++++|...+++..... +.+...+..+...|...|++++|...+++..+.... +.
T Consensus 205 ~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 281 (472)
T 4g1t_A 205 NPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NA 281 (472)
T ss_dssp CSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH
T ss_pred CCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hH
Confidence 433 56666666655554 467889999999988764 567788899999999999999999999999887533 56
Q ss_pred HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 292 VTYNLVIKGFCRS-------------------GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 292 ~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
.++..+...|... +..++|...++...+.... +...+..+...|...|++++|.+.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 6666666655432 2356778888877765322 4556788899999999999999999999
Q ss_pred HhCCCCCCHH--HHHHHHH-HHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 353 MKKNWVPSVD--TISALLE-GLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 353 ~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
++....+... .+..+.. .....|+.++|++.+++..+..+..
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 8865332221 2233322 3457899999999999988776654
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.5e-13 Score=113.29 Aligned_cols=198 Identities=9% Similarity=-0.112 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHH
Q 015329 118 IMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFC 197 (409)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 197 (409)
+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|..++++..... +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444443332221 113344445555555
Q ss_pred hc-CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHH
Q 015329 198 EM-GILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA 275 (409)
Q Consensus 198 ~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 275 (409)
.. |++++|...|+++.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 55 55555555555555421112 13444455555555555555555555555432 22344555555555555555555
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 276 NKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
...++++.+.....+...+..+...+...|+.+++..+++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555443212444455555555555556555555555543
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=4.3e-13 Score=119.31 Aligned_cols=248 Identities=8% Similarity=-0.025 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC-HHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD-LKAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
...+..+...+...|++++|++.|++.++.. +-+..+|+.+..++...|+ +++|...+++..... +-+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 4456667777778888888888888887764 4456677888888888886 888888887665542 22566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-cCCH
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN-KRRS 272 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~ 272 (409)
.++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888888886544 77888888888888888888888888888864 4567788888888888 5554
Q ss_pred hHH-----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----
Q 015329 273 WQA-----NKLMGLMQRFGIEPDEVTYNLVIKGFCRSG--HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG----- 340 (409)
Q Consensus 273 ~~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 340 (409)
++| +..|++..+.... +...|+.+...+...| ++++|.+.+.++ +.. ..+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 666 4777777776433 5677777777787777 578888888887 332 335677788888887764
Q ss_pred ----CHhHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 015329 341 ----DFNLAYIMCKDS-MKKNWVPSVDTISALLEGL 371 (409)
Q Consensus 341 ----~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~ 371 (409)
.+++|.++++++ .+.+ +.....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 257888888887 5543 33334454444443
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.7e-12 Score=110.61 Aligned_cols=223 Identities=9% Similarity=-0.086 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHhcCccCCCCcCHHHHH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE----SRDLKAIQAFLMEVPEKFHIQFDIFSFN 190 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (409)
...+..+...|...|++++|++.|++..+ +-+...+..+...|.. .++++.|..+|++..+. + +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence 44455566666677777777777777665 2244566666666776 77777777777655433 2 566677
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329 191 IVIKAFCE----MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVR 262 (409)
Q Consensus 191 ~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 262 (409)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777764 56677777777777 788888888888877765 55666667
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 263 IQHLVN----KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 263 l~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888877764 45666777777877 888888888888887763 3566777777
Q ss_pred HHHH----cCCHhHHHHHHHHHHhCC
Q 015329 335 YLCQ----EGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 335 ~~~~----~g~~~~a~~~~~~m~~~~ 356 (409)
.|.. .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7877 788888888888877664
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.2e-14 Score=122.42 Aligned_cols=246 Identities=11% Similarity=-0.051 Sum_probs=141.7
Q ss_pred CCCchhHHHHHHHhhhCCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHH
Q 015329 93 ARRFDYIEHLLEHQKSLPQG---RREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAI 169 (409)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 169 (409)
.|++++|+..++++...... .+...+..+...|...|++++|.+.|++..+.+ +.+..+|..+...+...|+++.|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34455555555555443211 123344445555555566666666555555443 33455555566666666666666
Q ss_pred HHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 170 QAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
...+++..... +.+...+..+...|...|++++|.+.|+++.+.. |+.......+..+...|++++|...++....
T Consensus 97 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66655443321 1235566777777777777777777777777643 3333334444455666777788777766665
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015329 250 KGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR 326 (409)
Q Consensus 250 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 326 (409)
.. +++...+ .++..+...++.++|...+....+..... +...+..+...|.+.|++++|...|++..+.. |+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 42 3333333 35666667777777777777765442111 14667777888888888888888888887653 322
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHH
Q 015329 327 KIYQTMIHYLCQEGDFNLAYIMC 349 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~ 349 (409)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223344566677777776655
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=6.5e-13 Score=113.07 Aligned_cols=228 Identities=9% Similarity=-0.001 Sum_probs=138.6
Q ss_pred HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcC
Q 015329 52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR--EGFIMRIMMLYGKAG 129 (409)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 129 (409)
..+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.....+..+. ...+..+...|...|
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 34556677777777777776665 23444667777777777777777777777766332111 223566777777777
Q ss_pred ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 015329 130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVM 209 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 209 (409)
++++|++.|++..+.. +.+..++..+...+...|+++.|...+++.... .+.+...+..+...+...+++++|.+.|
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776654 334566777777777777777777777655443 1223445555552333445777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcC-CCCC------HhhHHHHHHHHHhcCCHhHHHHHH
Q 015329 210 VEMQKLGVKPDVITYTTLISAFYKDNR---PEIGNGLWNLMVCKG-CFPN------LATFNVRIQHLVNKRRSWQANKLM 279 (409)
Q Consensus 210 ~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~a~~~~ 279 (409)
++..+.... +...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|...+
T Consensus 166 ~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777664322 35555566666666666 666666666655431 1122 134555555666666666666666
Q ss_pred HHHHHc
Q 015329 280 GLMQRF 285 (409)
Q Consensus 280 ~~~~~~ 285 (409)
++..+.
T Consensus 245 ~~al~~ 250 (272)
T 3u4t_A 245 KNILAL 250 (272)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666554
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=1.1e-13 Score=115.72 Aligned_cols=197 Identities=11% Similarity=0.038 Sum_probs=97.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 153 LNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFY 232 (409)
Q Consensus 153 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 232 (409)
|..+...+...|+++.|..++++.... .+.+...+..+...+...|++++|.+.|++..+.... +..++..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 333334444444444444444333221 1113444445555555555555555555555543222 4455555555555
Q ss_pred HcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329 233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK 312 (409)
Q Consensus 233 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (409)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555542 33445555555566666666666666666555432 245555566666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 313 VYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 313 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
.++++.+... .+..++..+..+|...|++++|.+.++++.+.
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666655422 24555666666666666666666666666554
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=3.6e-13 Score=119.78 Aligned_cols=237 Identities=9% Similarity=-0.027 Sum_probs=199.2
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 150 VKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI-LDKAYLVMVEMQKLGVKPDVITYTTLI 228 (409)
Q Consensus 150 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ll 228 (409)
...|..+...+...|+++.|...+++..... +-+...|+.+...+...|+ +++|+..|++..+.... +...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 4567788888999999999999998776542 2257789999999999997 99999999999997655 788999999
Q ss_pred HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCCH
Q 015329 229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR-SGHL 307 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~ 307 (409)
.++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.... +...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999875 567889999999999999999999999999988644 78899999999999 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-----
Q 015329 308 DMA-----KKVYSAMLGRRLMPNRKIYQTMIHYLCQEG--DFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN----- 375 (409)
Q Consensus 308 ~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----- 375 (409)
++| +..+++.+..... +...|+.+...+...| ++++|.+.+.++ +. -+.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 5888888876433 6778888888888888 689999999987 43 3567788899999998874
Q ss_pred ----ChHHHHHHHHHH-HhcCCCC
Q 015329 376 ----QPCKANTIMALV-QRRVPHF 394 (409)
Q Consensus 376 ----~~~~a~~~~~~~-~~~~~~~ 394 (409)
..++|+++++++ .+.+|..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhCchh
Confidence 258999999999 6776543
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.7e-14 Score=130.42 Aligned_cols=299 Identities=8% Similarity=-0.069 Sum_probs=201.4
Q ss_pred ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCC-CH
Q 015329 79 NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR---EGFIMRIMMLYGKAGMIKHAMDTFYDMHLY----GCKR-TV 150 (409)
Q Consensus 79 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 150 (409)
....+......+...|++++|...|+++....+... ..++..+...|...|++++|.+.|++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334455566777778888888888887776543321 245666777788888888888887776432 1111 23
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC----HHHHHHHHHHHHhcCC--------------------hhHHH
Q 015329 151 KSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD----IFSFNIVIKAFCEMGI--------------------LDKAY 206 (409)
Q Consensus 151 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~ 206 (409)
.++..+...+...|+++.|...+++......-.++ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 46677777788888887777777654332111111 4467778888888888 88888
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CCC----HhhHHHHHHHHHhcCCHhHHH
Q 015329 207 LVMVEMQKL----GVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC-FPN----LATFNVRIQHLVNKRRSWQAN 276 (409)
Q Consensus 207 ~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~ 276 (409)
+.+++..+. +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888876542 1111 234677788888889999999998888765310 111 237778888889999999999
Q ss_pred HHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHhHHH
Q 015329 277 KLMGLMQRF----GIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL-MPN----RKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 277 ~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~ 346 (409)
..+++..+. +..+ ...++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887643 1111 145777888889999999999999988765411 112 456778888899999999999
Q ss_pred HHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCCh
Q 015329 347 IMCKDSMKK----NW-VPSVDTISALLEGLKKNNQP 377 (409)
Q Consensus 347 ~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~ 377 (409)
+.+++..+. +. .....++..+...+...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 998887653 21 12245666677777777765
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=1.7e-13 Score=124.25 Aligned_cols=279 Identities=10% Similarity=-0.052 Sum_probs=146.6
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE---GFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK 158 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 158 (409)
.+..+...+...|++++|...|+++....+.... ..+..+...|...|++++|.+.|++..+..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------
Confidence 3444556666677777777777766655332111 345556666666777777777666654320
Q ss_pred HHHccCCHHHHHHHHHhcCccCCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHH
Q 015329 159 VLTESRDLKAIQAFLMEVPEKFHI-QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL----G-VKPDVITYTTLISAFY 232 (409)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~ll~~~~ 232 (409)
...+- .....++..+...|...|++++|...|++..+. + ......++..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 00000 112233444444555555555555554444331 0 0011234444555555
Q ss_pred HcCC-----------------hhhHHHHHHHHHhc----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-c
Q 015329 233 KDNR-----------------PEIGNGLWNLMVCK----GC-FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-P 289 (409)
Q Consensus 233 ~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p 289 (409)
..|+ +++|...+++..+. +. .....++..+...|...|++++|...+++..+.... .
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 55555555443321 11 112235555666666666666666666665432100 0
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC----
Q 015329 290 D----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-----PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN---- 356 (409)
Q Consensus 290 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---- 356 (409)
+ ...+..+...|...|++++|...+++....... ....++..+...|...|++++|...+++.++..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 225566666677777777777777665543100 113456666667777777777777776665431
Q ss_pred -CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 357 -WVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 357 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
......++..+...|.+.|++++|.+.+++..+...
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 011133566666777777777777777777665543
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=8.2e-14 Score=126.26 Aligned_cols=270 Identities=9% Similarity=-0.048 Sum_probs=170.5
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCcc----chHHHHHHHHhcCCCchhHHHHHHHhhhC----CC-CCChhHHHHHHH
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENK----YAFEDTVSRLAGARRFDYIEHLLEHQKSL----PQ-GRREGFIMRIMM 123 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 123 (409)
.+...|++++|++.|+.+.+.. +.+. .++..+...+...|++++|...+++.... +. ......+..+..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3567799999999999998876 2222 46788889999999999999999987643 11 112455667888
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC--
Q 015329 124 LYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI-- 201 (409)
Q Consensus 124 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-- 201 (409)
.|...|++++|.+.|++..+.... .++ ......++..+...|...|+
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~---------------~~~----------------~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQ---------------LGD----------------RLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH---------------HTC----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHH---------------hhc----------------hHHHHHHHHHHHHHHHHcCccc
Confidence 888999999999998887642100 000 00012234444444444444
Q ss_pred ---------------hhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CC----H
Q 015329 202 ---------------LDKAYLVMVEMQKL----GV-KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PN----L 256 (409)
Q Consensus 202 ---------------~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~ 256 (409)
+++|++.+++..+. +. .....++..+...+...|++++|...+++..+.... ++ .
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 55555555444321 10 112235556666666677777777766665542100 01 2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-----PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR----L-MPNR 326 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~p~~ 326 (409)
.++..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++..+.. . ....
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 35666777777788888888777776543110 124566777778888888888888888776531 0 1123
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
.++..+...|...|++++|.+.+++..+.
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777788888888888888888877653
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=1.1e-11 Score=122.52 Aligned_cols=288 Identities=13% Similarity=0.085 Sum_probs=149.0
Q ss_pred HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329 52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (409)
..+...+.+++|..+|+...... ...+.++. ..+++++|.++.++.. ++.+|..+..++...|++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~------~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNT------SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHH------HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 33445677777777777652111 11111211 4455555555555431 345555555555555555
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVE 211 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 211 (409)
++|++.|.+. -|...|..++.++.+.|+++++.+++... .+.. ++....+.++.+|++.++++....+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA-rk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 5555555332 23444555555555555555555555222 2111 22222223455555555544322221
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc------
Q 015329 212 MQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF------ 285 (409)
Q Consensus 212 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 285 (409)
+ .++...|..+...|...|++++|...|... ..|..+..+|++.|++++|.+.+++....
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev 1256 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 1256 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHH
Confidence 1 123334444555555555555555555542 24445555555555555555444433110
Q ss_pred ------------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHhHH
Q 015329 286 ------------------GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE--GDFNLA 345 (409)
Q Consensus 286 ------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a 345 (409)
++..+...+..++..|.+.|.+++|+.+++...... .-....|+-+...|++. ++..++
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 112245556677778888888888888887766543 22444566666666553 445555
Q ss_pred HHHHHHHHhCCCCC------CHHHHHHHHHHHHhCCChHHHHH
Q 015329 346 YIMCKDSMKKNWVP------SVDTISALLEGLKKNNQPCKANT 382 (409)
Q Consensus 346 ~~~~~~m~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~ 382 (409)
.++|..-. ++++ +...|.-++..|.+.|+++.|..
T Consensus 1336 lk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1336 LELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55554322 2222 45678888888999999998873
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.2e-13 Score=121.20 Aligned_cols=136 Identities=9% Similarity=-0.061 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----H
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIE-PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PN----R 326 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~ 326 (409)
..+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++..+.... .+ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 34555556666666666666666655432 100 01235566666666777777777766665433100 11 3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-----WVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
.++..+...|...|++++|...+++..+.. ......++..+...|.+.|++++|.+.+++..+...
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 456666677777777777777776665431 011134566677777777777777777777766543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=4.6e-13 Score=120.92 Aligned_cols=276 Identities=9% Similarity=-0.062 Sum_probs=209.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC----HHhHHHHHHHHHccCCHHHHHHHHHhcCcc---CCCCc-CH
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT----VKSLNAALKVLTESRDLKAIQAFLMEVPEK---FHIQF-DI 186 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~ 186 (409)
...+......+...|++++|...|++..+.+ +.+ ..++..+...+...|+++.|...+++.... .+-.| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4445567788999999999999999998864 233 357888999999999999999988654322 22222 25
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------hhhHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PD----VITYTTLISAFYKDNR--------------------PEIGN 241 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~ 241 (409)
.++..+...|...|++++|...+++..+.... .+ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 56888899999999999999999988753110 12 4478888889999999 99999
Q ss_pred HHHHHHHhc----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHHhcCCHHHHH
Q 015329 242 GLWNLMVCK----GC-FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-EPD----EVTYNLVIKGFCRSGHLDMAK 311 (409)
Q Consensus 242 ~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~ 311 (409)
..+....+. +. .....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876542 11 11245788888999999999999999998865311 111 347888899999999999999
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhCCChHHHH
Q 015329 312 KVYSAMLGRRLM-PN----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN----W-VPSVDTISALLEGLKKNNQPCKAN 381 (409)
Q Consensus 312 ~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~ 381 (409)
..+++..+.... ++ ..++..+...|...|++++|...+++..+.. - .....++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987654111 11 5577888999999999999999999886541 1 111557888889999999999999
Q ss_pred HHHHHHHhcC
Q 015329 382 TIMALVQRRV 391 (409)
Q Consensus 382 ~~~~~~~~~~ 391 (409)
+.+++..+..
T Consensus 328 ~~~~~al~~~ 337 (406)
T 3sf4_A 328 HFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876553
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=4e-13 Score=117.77 Aligned_cols=274 Identities=8% Similarity=-0.060 Sum_probs=209.5
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCC-CCHHhH
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR---EGFIMRIMMLYGKAGMIKHAMDTFYDMHLY----GCK-RTVKSL 153 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~ 153 (409)
.+......+...|++++|...++++....+... ...+..+...|...|++++|.+.+++..+. +-. ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 455567788899999999999999987654322 356778889999999999999999987543 212 235578
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCccCCCCcC----HHHHHHHHHHHHhcCC--------------------hhHHHHHH
Q 015329 154 NAALKVLTESRDLKAIQAFLMEVPEKFHIQFD----IFSFNIVIKAFCEMGI--------------------LDKAYLVM 209 (409)
Q Consensus 154 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~ 209 (409)
..+...+...|+++.|...+++......-.++ ..++..+...|...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 88999999999999999999775443221222 4478888899999999 99999999
Q ss_pred HHHHhC----CCC-CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CC----HhhHHHHHHHHHhcCCHhHHHHHH
Q 015329 210 VEMQKL----GVK-PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PN----LATFNVRIQHLVNKRRSWQANKLM 279 (409)
Q Consensus 210 ~~m~~~----g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~ 279 (409)
++.... +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887642 111 12446778888999999999999999998875211 11 237788888999999999999999
Q ss_pred HHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 015329 280 GLMQRFGIE-PD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR----L-MPNRKIYQTMIHYLCQEGDFNLAYIMC 349 (409)
Q Consensus 280 ~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 349 (409)
++..+.... .+ ..++..+...|...|++++|...+++..+.. . .....++..+...|...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 988653111 11 5577888899999999999999999987641 1 111446778899999999999999999
Q ss_pred HHHHhC
Q 015329 350 KDSMKK 355 (409)
Q Consensus 350 ~~m~~~ 355 (409)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998764
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2.9e-12 Score=102.17 Aligned_cols=166 Identities=12% Similarity=-0.010 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
+...|..+...|.+.|++++|++.|++..+.... +..++..+...+.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445555666666666666666666665554332 45555555555555555555555555555442 233444444455
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 344 (409)
.+...++++.+...+.+..+.... +...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 555555555555555555444321 3444455555555555555555555555443221 34445555555555555555
Q ss_pred HHHHHHHHHh
Q 015329 345 AYIMCKDSMK 354 (409)
Q Consensus 345 a~~~~~~m~~ 354 (409)
|.+.|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=5.7e-12 Score=100.46 Aligned_cols=170 Identities=6% Similarity=-0.044 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329 220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299 (409)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 299 (409)
+..+|..+...+.+.|++++|+..|++..+.. +-+...+..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56778888888888888888888888888764 456777888888888888888888888888776533 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 015329 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCK 379 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 379 (409)
.+...++++.|...+.+....... +...+..+...|...|++++|++.|++.++.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888887766433 66778888888888888888888888887764 5567788888888888888888
Q ss_pred HHHHHHHHHhcCCC
Q 015329 380 ANTIMALVQRRVPH 393 (409)
Q Consensus 380 a~~~~~~~~~~~~~ 393 (409)
|++.+++..+..|.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 88888888877654
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=2.7e-11 Score=105.09 Aligned_cols=186 Identities=10% Similarity=-0.010 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-Hh-hHHHHHHHHHhcCCHhHHHHHH
Q 015329 203 DKAYLVMVEMQK-LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LA-TFNVRIQHLVNKRRSWQANKLM 279 (409)
Q Consensus 203 ~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~ 279 (409)
++|..+|++..+ .... +...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 556666666555 2221 3445555555555566666666666665553 232 22 5555555566666666666666
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-C
Q 015329 280 GLMQRFGIEPDEVTYNLVIKGFC-RSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-W 357 (409)
Q Consensus 280 ~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~ 357 (409)
++..+.+. .+...|........ ..|++++|..+|+...+.... +...|..++..+.+.|++++|..+|++.++.. +
T Consensus 158 ~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 66655432 12333322222211 246666666666666554211 45556666666666666666666666666542 2
Q ss_pred CC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 358 VP--SVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 358 ~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.| ....|..++..+.+.|+.+.|..+++++.+..|+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 33 3455666666666666666666666666666654
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.9e-12 Score=116.16 Aligned_cols=300 Identities=9% Similarity=-0.065 Sum_probs=200.6
Q ss_pred HhcCCCchhHHHHHHHhhhCCCC--CChh--HHHHHHHH--HHhcCChHHHH-----------HHHHHhhhcCCCCCH--
Q 015329 90 LAGARRFDYIEHLLEHQKSLPQG--RREG--FIMRIMML--YGKAGMIKHAM-----------DTFYDMHLYGCKRTV-- 150 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~m~~~~~~~~~-- 150 (409)
+.+.+++++|..+++++...-.. .+.. .|-.++.. ..-.+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 35678888888888877643211 2222 22223222 22233344444 666665432211110
Q ss_pred --HhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C----
Q 015329 151 --KSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF----DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-P---- 219 (409)
Q Consensus 151 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~---- 219 (409)
..+......+...|+++.|...+++......-.+ ...++..+...|...|+++.|+..+++..+.... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1122255667788999999888876543211112 2456888899999999999999999988752111 1
Q ss_pred -CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----CC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-C
Q 015329 220 -DVITYTTLISAFYKDNRPEIGNGLWNLMVCKG----CF-PNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GI-E 288 (409)
Q Consensus 220 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~ 288 (409)
...+++.+...|...|++++|...+++..+.. .. ....++..+...|...|++++|...+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 24577888899999999999999998876531 11 11247888899999999999999999998762 32 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCCCCCCH
Q 015329 289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPNRKIYQTMIHYLCQEGD---FNLAYIMCKDSMKKNWVPSV 361 (409)
Q Consensus 289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~ 361 (409)
....++..+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|+.++++. .......
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHH
Confidence 34677888999999999999999999987654 111122335667777888888 77888887764 1222334
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 362 DTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
..+..+...|...|++++|.+.+++..+..
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 567778899999999999999999886543
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.6e-12 Score=119.00 Aligned_cols=312 Identities=10% Similarity=-0.029 Sum_probs=180.9
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCc---hhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRF---DYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG 129 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (409)
.+.+.|++++|++.|+...+.+ +..++..+...+...|+. ++|..+|+..... +...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 3455677777888777776654 233344444555556666 7777777776643 3333334444344443
Q ss_pred -----ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC---------------------------------------
Q 015329 130 -----MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD--------------------------------------- 165 (409)
Q Consensus 130 -----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--------------------------------------- 165 (409)
++++|++.|++..+.|. ++ .+..|...|...+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 66777777777766542 22 33344444433222
Q ss_pred HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChh
Q 015329 166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMG---ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKD----NRPE 238 (409)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----~~~~ 238 (409)
.+.+..+++..... +...+..+...|...| +.++|+++|++..+.|.. +...+..+...|... ++++
T Consensus 161 ~~~a~~~~~~a~~~-----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 161 LDDVERICKAALNT-----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HHHHHHHHHHHTTT-----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 23333344332211 2336777777788888 888888888888887643 555555666666544 6788
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHH-H--HhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-----CHHHH
Q 015329 239 IGNGLWNLMVCKGCFPNLATFNVRIQH-L--VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSG-----HLDMA 310 (409)
Q Consensus 239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~a 310 (409)
+|...|+... .| +...+..+-.. + ...+++++|...|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 8888888877 43 45555555555 3 45788888888888888776 5566666666666 45 88888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHH
Q 015329 311 KKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANT 382 (409)
Q Consensus 311 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 382 (409)
.+.|++.. . -+...+..+...|.. ..++++|..+|++..+.|. ......|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 88888776 3 366667777766665 3378888888888877762 3345555566654 457888888
Q ss_pred HHHHHHhcCCCCCc
Q 015329 383 IMALVQRRVPHFSS 396 (409)
Q Consensus 383 ~~~~~~~~~~~~~~ 396 (409)
.++...+.+.+...
T Consensus 380 ~~~~A~~~g~~~a~ 393 (452)
T 3e4b_A 380 FSQLAKAQDTPEAN 393 (452)
T ss_dssp HHHHHHTTCCHHHH
T ss_pred HHHHHHHCCCHHHH
Confidence 88888877754433
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=6.3e-11 Score=102.79 Aligned_cols=218 Identities=10% Similarity=0.027 Sum_probs=143.5
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHH-------ccCCH-------HHHHHHHHhcCccCCCCc-CHHHHHHHHHHH
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLT-------ESRDL-------KAIQAFLMEVPEKFHIQF-DIFSFNIVIKAF 196 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~ 196 (409)
++|..+|++..... +-+...|..+...+. +.|+. +.|..+|++.... +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 56666666666542 445556666666554 24664 6777777655431 123 345677777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcCCHhH
Q 015329 197 CEMGILDKAYLVMVEMQKLGVKPDVI-TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV-NKRRSWQ 274 (409)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~ 274 (409)
.+.|++++|.++|++..+.... +.. +|..++..+.+.|++++|..+|++..+.+ +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 7778888888888877764322 232 67777777777788888888888777653 233444433332222 2588888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR-LMP--NRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
|..+|+...+.... +...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887765322 56777777788888888888888888887752 343 456777778877788888888888887
Q ss_pred HHhC
Q 015329 352 SMKK 355 (409)
Q Consensus 352 m~~~ 355 (409)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=3.9e-12 Score=114.12 Aligned_cols=298 Identities=7% Similarity=-0.068 Sum_probs=207.0
Q ss_pred hhhcCChHHHHHHHHHhhcCC-CCCCc--cchHHHHHH--HHhcCCCchhHH-----------HHHHHhhhCCCCCCh--
Q 015329 54 LKAERDPEKLFQLFKANAHNR-IVIEN--KYAFEDTVS--RLAGARRFDYIE-----------HLLEHQKSLPQGRRE-- 115 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~li~--~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 115 (409)
..+.++.++|..+++.+.+.- ....| ...|-.++. .....+.++.+. ++++.+...+...+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 456789999999999986542 11122 223333322 122223334444 666666543221111
Q ss_pred --hHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc----
Q 015329 116 --GFIMRIMMLYGKAGMIKHAMDTFYDMHLY----GCKR-TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF---- 184 (409)
Q Consensus 116 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 184 (409)
.++......+...|++++|.+.|++..+. +-.+ ...++..+...|...|+++.|...+++...-..-.+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 11223566788999999999999998753 1111 345788899999999999988888866543211111
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CC-C
Q 015329 185 -DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PD----VITYTTLISAFYKDNRPEIGNGLWNLMVCK----GC-F 253 (409)
Q Consensus 185 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~ 253 (409)
...+++.+...|...|++++|.+.|++..+.... .+ ..++..+...|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2457888999999999999999999988753111 11 247888999999999999999999998762 33 4
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-C
Q 015329 254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEPDEVTYNLVIKGFCRSGH---LDMAKKVYSAMLGRRLMP-N 325 (409)
Q Consensus 254 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p-~ 325 (409)
....++..+...|.+.|++++|...+++..+. +-......+..+...|...|+ +++|..++++. +..| .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 45677889999999999999999999988653 212123345677788888898 77777777765 2222 3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
...+..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44677889999999999999999998765
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=3.7e-13 Score=116.80 Aligned_cols=166 Identities=11% Similarity=-0.000 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-------CCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc------CCCCc
Q 015329 118 IMRIMMLYGKAGMIKHAMDTFYDMHLY-------GCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK------FHIQF 184 (409)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~ 184 (409)
+..+...+...|++++|.++|+++.+. ..+....++..+...+...|+++.|..++++.... ...+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 344444555555555555555554431 11112233444444444444444444444332211 01111
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------C
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKL------GVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCK------G 251 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~ 251 (409)
...++..+...|...|++++|.+.|++..+. +..| ....+..+...+...|++++|..+++...+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 2344555555666666666666666555432 1111 2233444555555555555555555554432 1
Q ss_pred CC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329 252 CF-PNLATFNVRIQHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 252 ~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 283 (409)
.. ....++..+...|...|++++|...++++.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 122344445555555555555555555544
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.6e-12 Score=112.70 Aligned_cols=243 Identities=11% Similarity=0.018 Sum_probs=167.2
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHhcCccC------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 015329 149 TVKSLNAALKVLTESRDLKAIQAFLMEVPEKF------HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL------G 216 (409)
Q Consensus 149 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g 216 (409)
+..++..+...+...|+++.|..++++..... ..+....++..+...|...|++++|...|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 45678888889999999999999987765421 12234566888888999999999999999988763 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc---
Q 015329 217 V-KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK------GC-FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF--- 285 (409)
Q Consensus 217 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 285 (409)
- .....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223567788888899999999999999888764 22 224566778888899999999999999988664
Q ss_pred ---CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-------CHHHHHHHHHHHHHcCCHhHHHH
Q 015329 286 ---GIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-------RLMP-------NRKIYQTMIHYLCQEGDFNLAYI 347 (409)
Q Consensus 286 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p-------~~~~~~~li~~~~~~g~~~~a~~ 347 (409)
+..| ...++..+...|...|++++|.+.++++.+. ...+ ....+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2223 3457788888899999999999999988753 1111 11222233334445556666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 348 MCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 348 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
.++...... +.+..++..+..+|.+.|++++|.+.+++..+..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 666655432 44567788899999999999999999999876543
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=2.4e-11 Score=108.79 Aligned_cols=310 Identities=7% Similarity=-0.081 Sum_probs=201.4
Q ss_pred CCccchHHHHHHHH--hcCCCchhHHHHHHHhhhCCC--CCChh--HHHHHHHH--HHhcCChHHHH---------HHHH
Q 015329 77 IENKYAFEDTVSRL--AGARRFDYIEHLLEHQKSLPQ--GRREG--FIMRIMML--YGKAGMIKHAM---------DTFY 139 (409)
Q Consensus 77 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~--~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~~ 139 (409)
.|+..+-..+-..| ...+++++|..+++++..... ..+.. +|-.++.. ..-.+.+..+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555555555555 778888888888887654211 11222 22333322 11122222222 5555
Q ss_pred HhhhcCCCCCH----HhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329 140 DMHLYGCKRTV----KSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF----DIFSFNIVIKAFCEMGILDKAYLVMVE 211 (409)
Q Consensus 140 ~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~ 211 (409)
.+.....+.+. ..+......+...|+++.|...+++........+ ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432211111 1223344556778999888888876543221112 245688888899999999999999988
Q ss_pred HHhCC----C-CC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329 212 MQKLG----V-KP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCK----GCF-PNLATFNVRIQHLVNKRRSWQANKLMG 280 (409)
Q Consensus 212 m~~~g----~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~ 280 (409)
..+.. . .+ ...+++.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77521 1 11 2456778888999999999999999887653 111 123567788889999999999999999
Q ss_pred HHHH-----cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---HhHHHHH
Q 015329 281 LMQR-----FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR----LMPNRKIYQTMIHYLCQEGD---FNLAYIM 348 (409)
Q Consensus 281 ~~~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~ 348 (409)
+..+ .. +....++..+...|.+.|++++|...+++..+.. -......+..+...+...|+ +.+|+..
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8876 33 2236778888999999999999999999887642 12223345556666667777 7778777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 349 CKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 349 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
+++. .........+..+...|...|++++|.+.+++..+
T Consensus 326 ~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7752 12223345667788999999999999999988764
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=2.7e-12 Score=118.34 Aligned_cols=209 Identities=8% Similarity=-0.103 Sum_probs=95.2
Q ss_pred chhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 015329 96 FDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI-KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLM 174 (409)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 174 (409)
++++.+.++....... .+...+..+...|...|++ ++|++.|++..+.. +-+..+|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444433322 2344445555555555555 55655555555443 2234455555555555555555555554
Q ss_pred hcCccCCCCcCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCh
Q 015329 175 EVPEKFHIQFDIFSFNIVIKAFCEM---------GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKD--------NRP 237 (409)
Q Consensus 175 ~~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--------~~~ 237 (409)
+.... .|+...+..+...|... |++++|++.|++..+.... +...|..+..+|... |++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 43322 23444444455555554 5555555555555443222 344444444444444 444
Q ss_pred hhHHHHHHHHHhcCCC---CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329 238 EIGNGLWNLMVCKGCF---PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK 312 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (409)
++|+..|++..+.. + .+...|..+..+|...|++++|...|++..+.... +...+..+...+...|++++|.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444431 1 23444444444444444444444444444433211 23334444444444444444443
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=3.3e-11 Score=110.30 Aligned_cols=308 Identities=8% Similarity=-0.038 Sum_probs=207.5
Q ss_pred ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchh---HHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329 59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDY---IEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM 135 (409)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (409)
++++|++.|+...+.+ +...+..+...|...+..++ +.+.+......+ .......|...|...+.++.+.
T Consensus 89 ~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred CHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 5667777777776655 22255556666655544333 333333333222 2344555677777777555555
Q ss_pred HHHHHhhhcCCCCCHHhHHHHHHHHHccC---CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc----CChhHHHHH
Q 015329 136 DTFYDMHLYGCKRTVKSLNAALKVLTESR---DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM----GILDKAYLV 208 (409)
Q Consensus 136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~ 208 (409)
+....+...-...+...+..+...|...| +.+++..+|+...+. | .++...+..+...|... +++++|+++
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 54333322222334448888999999999 889999999776544 3 44555556777777655 699999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH-H--HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-----CHhHHHHHHH
Q 015329 209 MVEMQKLGVKPDVITYTTLISA-F--YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR-----RSWQANKLMG 280 (409)
Q Consensus 209 ~~~m~~~g~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~ 280 (409)
|++.. . -+...+..+... + ...+++++|...|++..+.| +...+..+-..|. .| ++++|...|+
T Consensus 240 ~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99988 3 255666667666 3 46899999999999999887 6777777777777 55 9999999999
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHH
Q 015329 281 LMQRFGIEPDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDS 352 (409)
Q Consensus 281 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m 352 (409)
+.. .| +...+..|...|.. ..++++|...|+...+.|. ......|...|.. ..+.++|..+|+..
T Consensus 312 ~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 312 KAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 888 43 56677777777766 3499999999999988764 3455666666664 45899999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 353 MKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
.+.|. ++.......+......++.++|.++.++..+..
T Consensus 385 ~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 385 KAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 98873 333322222333333446778888887766543
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=2.7e-12 Score=118.34 Aligned_cols=192 Identities=10% Similarity=-0.002 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGIL-DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
...+..+...|...|++ ++|++.|++..+.... +...|..+...|...|++++|...|+...+. .|+...+..+..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 34444444444444454 5555554444443221 3444444444444555555555555444443 233444444444
Q ss_pred HHHhc---------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--CC
Q 015329 265 HLVNK---------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS--------GHLDMAKKVYSAMLGRRLM--PN 325 (409)
Q Consensus 265 ~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~--p~ 325 (409)
.|... |++++|...+++..+.... +...|..+..+|... |++++|.+.|++..+.... -+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 44444 5555555555555444221 344444444445444 4555555555555443210 14
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 015329 326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT 382 (409)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 382 (409)
...|..+..+|...|++++|.+.|++.++.. +.+...+..+..++...|++++|.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544432 2333444444455555555554443
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.9e-11 Score=97.18 Aligned_cols=167 Identities=10% Similarity=-0.105 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329 225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS 304 (409)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 304 (409)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 333444444444444444444443321 22344444555555555555555555555544421 2444555555556666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329 305 GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIM 384 (409)
Q Consensus 305 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 384 (409)
|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666554422 245556666666666677777777666666543 345566667777777777777777777
Q ss_pred HHHHhcCCCCC
Q 015329 385 ALVQRRVPHFS 395 (409)
Q Consensus 385 ~~~~~~~~~~~ 395 (409)
+++.+..|...
T Consensus 168 ~~~~~~~~~~~ 178 (186)
T 3as5_A 168 KKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHcCCCch
Confidence 77766655443
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.8e-10 Score=102.79 Aligned_cols=302 Identities=11% Similarity=-0.016 Sum_probs=197.6
Q ss_pred HHHHHHHhcCCCchhHHHHHHHhhhCCCCCChh----HHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCCH----HhHH
Q 015329 84 EDTVSRLAGARRFDYIEHLLEHQKSLPQGRREG----FIMRIMMLYGKAGMIKHAMDTFYDMHLYGC-KRTV----KSLN 154 (409)
Q Consensus 84 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~ 154 (409)
......+...|++++|...++.........+.. .+..+...+...|++++|.+.+++.....- ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334456667899999999999877654332322 345566778889999999999988765321 1121 2356
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCccC---CCC--c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHHHH
Q 015329 155 AALKVLTESRDLKAIQAFLMEVPEKF---HIQ--F-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK--P--DVITY 224 (409)
Q Consensus 155 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~--~~~~~ 224 (409)
.+...+...|+++.|...+++..... +.. | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 67778888899988888887654432 221 2 2345666778888889999999998888753221 1 23456
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-HhhHH-----HHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHHH
Q 015329 225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LATFN-----VRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTYN 295 (409)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~ 295 (409)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6777788888999999988888765321111 11121 22344678899999988888876543221 133456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGR----RLMPNR-KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG 370 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 370 (409)
.+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++..... +. .-.+..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence 6777888889999998888877543 222222 255666777888889999988888877642 10 112244
Q ss_pred HHhCCChHHHHHHHHHHHhcCCC
Q 015329 371 LKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
+...| +....+++.+....+.
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHcc--HHHHHHHHHHHhCCCC
Confidence 55555 6677777777777654
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=1.4e-10 Score=103.46 Aligned_cols=266 Identities=11% Similarity=-0.012 Sum_probs=173.1
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccc----hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCC-Ch----hHHHHHHHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKY----AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGR-RE----GFIMRIMML 124 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~l~~~ 124 (409)
....|++++|.+.++......+ ..+.. ++..+...+...|++++|.+.+++........ +. ..+..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3356888889998888776541 11111 35556677778889999888888776432111 11 224456777
Q ss_pred HHhcCChHHHHHHHHHhhhc----CCC--C-CHHhHHHHHHHHHccCCHHHHHHHHHhcCccC---CCCcCHHHHHHHHH
Q 015329 125 YGKAGMIKHAMDTFYDMHLY----GCK--R-TVKSLNAALKVLTESRDLKAIQAFLMEVPEKF---HIQFDIFSFNIVIK 194 (409)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ll~ 194 (409)
+...|++++|.+.+++..+. +.. | ...++..+...+...|+++.|...+++..... +......++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 88889999999888887653 211 2 23456667778888899988888887654332 21112356777788
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHHcCChhhHHHHHHHHHhcCCCC---CHhhHHHHHHH
Q 015329 195 AFCEMGILDKAYLVMVEMQKLGVKPD--VITYT----TLISAFYKDNRPEIGNGLWNLMVCKGCFP---NLATFNVRIQH 265 (409)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~ 265 (409)
.+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88888999999988888765311111 11111 22344668888999888888876543211 12245667778
Q ss_pred HHhcCCHhHHHHHHHHHHHc----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 266 LVNKRRSWQANKLMGLMQRF----GIEPDE-VTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88889999988888877542 222222 25566677788888899998888887754
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=6.5e-11 Score=94.01 Aligned_cols=163 Identities=15% Similarity=0.050 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV 267 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (409)
.+..+...+...|++++|.+.|+++.+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3444555555566666666666555543322 44555555555666666666666666655542 334555555666666
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 015329 268 NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYI 347 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 347 (409)
..|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666655432 2455556666666666666666666666655432 245566666666666666666666
Q ss_pred HHHHHHh
Q 015329 348 MCKDSMK 354 (409)
Q Consensus 348 ~~~~m~~ 354 (409)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=5.5e-11 Score=106.42 Aligned_cols=298 Identities=6% Similarity=-0.054 Sum_probs=203.5
Q ss_pred hhhcCChHHHHHHHHHhhcCC-CCC--CccchHHHHHHH--HhcCCCchhHH---------HHHHHhhhCCCCCCh----
Q 015329 54 LKAERDPEKLFQLFKANAHNR-IVI--ENKYAFEDTVSR--LAGARRFDYIE---------HLLEHQKSLPQGRRE---- 115 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~~li~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~---- 115 (409)
....++.++|.++++.+.+.- ... ++...|-.++.. ..-.+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~ 101 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY 101 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHH
Confidence 356789999999999875432 111 222333333322 12223333333 666666533221111
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CC----CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCC----Cc-C
Q 015329 116 GFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC-KR----TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHI----QF-D 185 (409)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~-~ 185 (409)
.++......+...|++++|++.|++..+... .+ ...++..+...|...|+++.|...+++...-..- .+ .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 1223345567899999999999999865321 12 2457888999999999999888888655432111 11 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCCCCH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKL----GVK-PDVITYTTLISAFYKDNRPEIGNGLWNLMVCK----GCFPNL 256 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~ 256 (409)
..+++.+...|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...+++..+. +.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 557889999999999999999999988752 111 12356788889999999999999999998761 223347
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC----CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGI----EPDEVTYNLVIKGFCRSGH---LDMAKKVYSAMLGRRLMP-NRKI 328 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~~ 328 (409)
.++..+...|.+.|++++|...+++..+... ......+..+...|...|+ +++|..+++. .+..| ....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence 7888899999999999999999999876422 2224456666677777888 7777777775 22222 2345
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
+..+...|...|++++|...|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888999999999999999998764
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=6.6e-11 Score=113.63 Aligned_cols=166 Identities=11% Similarity=-0.035 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
+..+|+.+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3667888888888999999999999888876433 57788888888888999999999888888764 445778888888
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 344 (409)
+|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 888899999999999888876433 5778888888888999999999999888876433 56778888888888999888
Q ss_pred HHHHHHHHHh
Q 015329 345 AYIMCKDSMK 354 (409)
Q Consensus 345 a~~~~~~m~~ 354 (409)
|.+.+++.++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=9.6e-11 Score=112.51 Aligned_cols=167 Identities=10% Similarity=-0.051 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329 220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299 (409)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 299 (409)
+..+|+.+...+.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999999874 446789999999999999999999999999887533 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 015329 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCK 379 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 379 (409)
+|.+.|++++|++.|++..+.... +...|+.+..+|...|++++|++.|++.++.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999887433 67889999999999999999999999998865 5567899999999999999999
Q ss_pred HHHHHHHHHhc
Q 015329 380 ANTIMALVQRR 390 (409)
Q Consensus 380 a~~~~~~~~~~ 390 (409)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=2.4e-10 Score=94.34 Aligned_cols=200 Identities=9% Similarity=0.001 Sum_probs=157.4
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329 184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI 263 (409)
Q Consensus 184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 263 (409)
.|...+......+...|++++|++.|++..+....++...+..+..++...|++++|+..++...+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888999999999999999999999987654677788779999999999999999999999864 44677889999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEPDE-------VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN---RKIYQTMI 333 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li 333 (409)
.+|...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999887432 44 45777888889999999999999999876 554 45677777
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 334 HYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.+|...| ...++++...+ ..+...|.... ....+.+++|...+++..+..|...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 7776544 34455555443 33455554443 3345678999999999999987663
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=7.3e-10 Score=91.44 Aligned_cols=197 Identities=9% Similarity=-0.091 Sum_probs=152.9
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT 226 (409)
Q Consensus 147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 226 (409)
..++..+......+...|+++.|...|++...... +++...+..+..++...|++++|++.|++..+.... +...|..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHH
Confidence 34668888999999999999999999987765421 257777777999999999999999999999987544 6778999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhcCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC---HHHHHH
Q 015329 227 LISAFYKDNRPEIGNGLWNLMVCKGCFPNL-------ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD---EVTYNL 296 (409)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ 296 (409)
+...+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 9999999999999999999998864 3344 45778888899999999999999999876 454 456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
+...|...| ..+++.+...+.. +...|..... ...+.+++|...+++.++..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 777775544 4455665555322 4445544433 34567899999999988763
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=1.6e-09 Score=91.67 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 190 NIVIKAFCEMGILDKAYLVMVEMQKLGV-KPDVITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 190 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444555555555544443332 11333444444444444444444444444444
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=5.3e-11 Score=101.46 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=155.3
Q ss_pred ccCCHHHHHHHHHhcCcc------CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCC-CCHHHHHHHH
Q 015329 162 ESRDLKAIQAFLMEVPEK------FHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL------GVK-PDVITYTTLI 228 (409)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~-~~~~~~~~ll 228 (409)
..|+++.|..++++.... ...+....++..+...|...|++++|...|++..+. +-. ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455665555555443321 111234667888999999999999999999998864 212 2356788889
Q ss_pred HHHHHcCChhhHHHHHHHHHhc------C-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc------CCCc-CHHHH
Q 015329 229 SAFYKDNRPEIGNGLWNLMVCK------G-CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF------GIEP-DEVTY 294 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~ 294 (409)
..+...|++++|...+.+..+. . .+....++..+...|...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 1 1234677888899999999999999999998765 2122 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHhH------HHHHHHHHHhCCCCCC
Q 015329 295 NLVIKGFCRSGHLDMAKKVYSAMLGR-------RLMP-NRKIYQTMIHYLCQEGDFNL------AYIMCKDSMKKNWVPS 360 (409)
Q Consensus 295 ~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p-~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~~~~~~ 360 (409)
..+...|...|++++|...+++..+. ...+ ....+..+...+...+.... +...++.... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88899999999999999999988753 1122 22233333333333333222 2222222111 11233
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 361 VDTISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
..++..+...|...|++++|.+++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888889999999999999999988764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=1.1e-10 Score=99.42 Aligned_cols=123 Identities=10% Similarity=-0.024 Sum_probs=60.5
Q ss_pred hcCCCchhHHHHHHHhhhC-------CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc------CC-CCCHHhHHHH
Q 015329 91 AGARRFDYIEHLLEHQKSL-------PQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY------GC-KRTVKSLNAA 156 (409)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 156 (409)
...|++++|+..+++.... ..+.....+..+...|...|++++|++.|++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3556677666666665431 11122445556667777777777777777766542 11 1122344455
Q ss_pred HHHHHccCCHHHHHHHHHhcCccC-----C-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329 157 LKVLTESRDLKAIQAFLMEVPEKF-----H-IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ 213 (409)
Q Consensus 157 l~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 213 (409)
...+...|+++.|..++++..... . .+....++..+...|...|++++|.+.|++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555554432220 0 01123334444444445555555555444444
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=5.1e-08 Score=92.69 Aligned_cols=211 Identities=10% Similarity=-0.028 Sum_probs=125.0
Q ss_pred HHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---------CCCC-----
Q 015329 191 IVIKAFCEMGILDKAY-LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG---------CFPN----- 255 (409)
Q Consensus 191 ~ll~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------~~~~----- 255 (409)
..+..+...|+.++|. ++|++..... +.+...|-..+...-+.|+++.|..+|+.+.+.. -.|+
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 3333344556666665 7777766532 2244455566666667777777777777766531 0121
Q ss_pred -------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCH
Q 015329 256 -------LATFNVRIQHLVNKRRSWQANKLMGLMQRF-GIEPDEVTYNLVIKGFCRS-GHLDMAKKVYSAMLGRRLMPNR 326 (409)
Q Consensus 256 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~ 326 (409)
...|...+....+.|+.+.|..+|....+. +. .....|...+..-.+. ++.+.|..+|+...+. ..-+.
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~ 504 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCch
Confidence 235666666666677777777777777664 21 1222332222222233 3477777777777665 22245
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 015329 327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP--SVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKS 404 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 404 (409)
..+...++.....|+.+.|..+|+..+...-.+ ....|..++..-.+.|+.+.+.++.+++.+..|+.+. ...+.+
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~--~~~f~~ 582 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK--LEEFTN 582 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH--HHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH--HHHHHH
Confidence 556666776677777888888887776653211 3356777777777778888888888888777765432 444444
Q ss_pred hh
Q 015329 405 IL 406 (409)
Q Consensus 405 ~~ 406 (409)
.|
T Consensus 583 ry 584 (679)
T 4e6h_A 583 KY 584 (679)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=2.7e-08 Score=94.52 Aligned_cols=341 Identities=9% Similarity=-0.022 Sum_probs=207.6
Q ss_pred ChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCC---chhHHHHHHHhhhCC-CCCChhHHHHHH
Q 015329 47 EPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARR---FDYIEHLLEHQKSLP-QGRREGFIMRIM 122 (409)
Q Consensus 47 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 122 (409)
|...+..+.+.++.+.+..+|+.+...- +.+...|...+..-.+.|. ++.+..+|+...... ..++..+|...+
T Consensus 69 W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl 146 (679)
T 4e6h_A 69 YVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI 146 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4455555666678888888888887774 4556667777777778888 889999999887654 135677887777
Q ss_pred HHHHhcCCh--------HHHHHHHHHhhh-cCC-CCC-HHhHHHHHHHHHc---------cCCHHHHHHHHHhcCccCCC
Q 015329 123 MLYGKAGMI--------KHAMDTFYDMHL-YGC-KRT-VKSLNAALKVLTE---------SRDLKAIQAFLMEVPEKFHI 182 (409)
Q Consensus 123 ~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~ 182 (409)
....+.++. +...++|+.... .|. .++ ...|...+..... .++.+.+..+|+....- ..
T Consensus 147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~ 225 (679)
T 4e6h_A 147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PM 225 (679)
T ss_dssp HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CC
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-cc
Confidence 666555543 334467776543 455 453 4677777765542 23457788888776531 11
Q ss_pred CcCHHHHHH---HHHHHH----------hcCChhHHHHHHHH--------------------------------------
Q 015329 183 QFDIFSFNI---VIKAFC----------EMGILDKAYLVMVE-------------------------------------- 211 (409)
Q Consensus 183 ~~~~~~~~~---ll~~~~----------~~g~~~~a~~~~~~-------------------------------------- 211 (409)
..-..+|.. +..... ...+++.|...+.+
T Consensus 226 ~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW 305 (679)
T 4e6h_A 226 DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIW 305 (679)
T ss_dssp SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHH
Confidence 111222211 111100 00111222222222
Q ss_pred -----------------------------HHhCCCCCCHHHHHHHHHHHHHcCChhhHH-HHHHHHHhcCCCCCHhhHHH
Q 015329 212 -----------------------------MQKLGVKPDVITYTTLISAFYKDNRPEIGN-GLWNLMVCKGCFPNLATFNV 261 (409)
Q Consensus 212 -----------------------------m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ 261 (409)
...... -....|-..+..+...|+.++|. .+|+..... ++.+...|-.
T Consensus 306 ~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~ 383 (679)
T 4e6h_A 306 LEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFS 383 (679)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 221110 12223333344445567777786 888887764 3455666677
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCC---------CcC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 262 RIQHLVNKRRSWQANKLMGLMQRFGI---------EPD------------EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 262 ll~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
.+....+.|++++|.++|+.+.+... .|+ ...|...+....+.|+.+.|..+|....+.
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77778888888888888888875310 131 235677777777788888899999888776
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 321 RLMPNRKIYQTMIHYLCQE-GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 321 ~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
-.......|...+..-.+. ++.+.|.++|+..++. ++-+...+...+......|+.+.|..+|+...+..++
T Consensus 464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 1112334444333333333 4588888888888775 4556666777788788888899999999988887764
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=1.4e-09 Score=81.18 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC 337 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 337 (409)
.|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++...+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 345555666666666666666666655432 2455566666666666777777777766665432 24556666666777
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329 338 QEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 338 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 392 (409)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 7777777777777766543 34566666677777777777777777777766554
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=1.4e-08 Score=86.00 Aligned_cols=61 Identities=7% Similarity=-0.168 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 225 TTLISAFYKDNRPEIGNGLWNLMVCKGC-FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
..+..++...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444444444555555555544433321 123344444444555555555555555554443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.3e-09 Score=93.58 Aligned_cols=198 Identities=11% Similarity=0.017 Sum_probs=139.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCCC-CHhhHHHH
Q 015329 193 IKAFCEMGILDKAYLVMVEMQKL----GVKPD-VITYTTLISAFYKDNRPEIGNGLWNLMVCK----GCFP-NLATFNVR 262 (409)
Q Consensus 193 l~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l 262 (409)
...|...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|+..+++..+. |-.. -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677888999998888877652 21111 467888888898999999998888877653 1110 13577888
Q ss_pred HHHHHhc-CCHhHHHHHHHHHHHcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHH
Q 015329 263 IQHLVNK-RRSWQANKLMGLMQRFGIEP-D----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR------KIYQ 330 (409)
Q Consensus 263 l~~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~ 330 (409)
...|... |++++|+..|++..+..... + ..++..+...|.+.|++++|...|++..+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888886 99999999999886542110 1 356788889999999999999999998876433221 2567
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hCCChHHHHHHHHHHHhcCC
Q 015329 331 TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV------DTISALLEGLK--KNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 392 (409)
.+..++...|++++|...|++.++. .|+. ..+..++.++. ..+++++|++.++.+.+..|
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 7788888999999999999987764 2321 23445566664 35668888888876665544
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=2.5e-09 Score=91.93 Aligned_cols=164 Identities=9% Similarity=-0.072 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHHc-CChhhHHHHHHHHHhcCCC-CC----H
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGV---KP--DVITYTTLISAFYKD-NRPEIGNGLWNLMVCKGCF-PN----L 256 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~-~~----~ 256 (409)
+|+.+...|.+.|++++|+..|++..+... .+ -..+++.+...|... |++++|+..|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444444444444444444444432110 00 023444555555553 5555555555554432100 00 2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE------VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN----- 325 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----- 325 (409)
.++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...|++..+. .|+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 34555566666666666666666666554322111 13455555566666666666666665543 121
Q ss_pred -HHHHHHHHHHHH--HcCCHhHHHHHHHHHH
Q 015329 326 -RKIYQTMIHYLC--QEGDFNLAYIMCKDSM 353 (409)
Q Consensus 326 -~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 353 (409)
...+..++.+|. ..+++++|...|+.+.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 112333444443 2345666666655443
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=4.5e-09 Score=78.29 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
|..+...+...|++++|..+|+++.+.+.. +...+..+...+...|++++|...++.+...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 444555555556666666666555543322 34445555555555555555555555555442 2234444445555555
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
.|++++|...++++.+... .+...+..+...+.+.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5555555555555544321 133444444455555555555555555444
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=4.2e-09 Score=88.83 Aligned_cols=167 Identities=11% Similarity=0.017 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CCCHhhHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD---VITYTTLISAFYKDNRPEIGNGLWNLMVCKGC--FPNLATFN 260 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~ 260 (409)
...+-.+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+...+... +.....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444555555555566666555555553221 1 34445555555555555555555555555320 11123344
Q ss_pred HHHHHHHh--------cCCHhHHHHHHHHHHHcCCCcCHHH-----------------HHHHHHHHHhcCCHHHHHHHHH
Q 015329 261 VRIQHLVN--------KRRSWQANKLMGLMQRFGIEPDEVT-----------------YNLVIKGFCRSGHLDMAKKVYS 315 (409)
Q Consensus 261 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~~~-----------------~~~li~~~~~~g~~~~a~~~~~ 315 (409)
.+..++.. .|++++|...|+++.+.... +... +..+...|.+.|++++|...|+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44445555 55566666666655544211 1111 1334444555555555555555
Q ss_pred HHHhCCCC-C-CHHHHHHHHHHHHHc----------CCHhHHHHHHHHHHh
Q 015329 316 AMLGRRLM-P-NRKIYQTMIHYLCQE----------GDFNLAYIMCKDSMK 354 (409)
Q Consensus 316 ~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~ 354 (409)
.+.+.... + ....+..+..+|... |++++|...|+++++
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 55543111 0 123344444444433 455555555555544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=1.1e-08 Score=86.21 Aligned_cols=174 Identities=6% Similarity=-0.013 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-Cc-CHHHH
Q 015329 220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN---LATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-EP-DEVTY 294 (409)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~ 294 (409)
+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+... .| ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 56667777888999999999999999999864 223 67788889999999999999999999988643 12 24567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHcCCHhHHHHHH
Q 015329 295 NLVIKGFCR--------SGHLDMAKKVYSAMLGRRLMPNRKIY-----------------QTMIHYLCQEGDFNLAYIMC 349 (409)
Q Consensus 295 ~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~ 349 (409)
..+..++.. .|++++|...|+++.+.... +.... ..+...|...|++++|...|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 778888888 99999999999999876322 22222 45678889999999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHhC----------CChHHHHHHHHHHHhcCCCCC
Q 015329 350 KDSMKKNW--VPSVDTISALLEGLKKN----------NQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 350 ~~m~~~~~--~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 395 (409)
+++++..- ......+..+..+|... |++++|...++++.+..|+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 99987531 11346777888888866 889999999999999988765
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=1.3e-08 Score=82.52 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCChhhHHHHHHHHHhcCCC
Q 015329 190 NIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT----------------LISAFYKDNRPEIGNGLWNLMVCKGCF 253 (409)
Q Consensus 190 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~ 253 (409)
......+...|++++|+..|++..+.... +...|.. +..++.+.|++++|+..|+...+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 33444566777777777777777664221 2233333 4445555555555555555555442 2
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 015329 254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFC 302 (409)
Q Consensus 254 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (409)
-+...+..+..++...|++++|...|++..+.... +...+..+..+|.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 34445555555555555555555555555544321 3444444444443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=5.1e-09 Score=100.85 Aligned_cols=174 Identities=8% Similarity=-0.171 Sum_probs=137.8
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 197 CEMGILDKAYLVMVEMQ--------KLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 197 ~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
...|++++|++.|++.. +... .+...+..+..++...|++++|...|++..+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999988 4322 256778888889999999999999999988863 4567888888889999
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 015329 269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIM 348 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 348 (409)
.|++++|...|++..+.... +...+..+..+|.+.|++++ .+.|++..+.... +...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887533 56778888889999999999 9999998876433 677888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 349 CKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 349 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
|++..+.+ +-+...+..+..++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99877653 2335667777777766554
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=3e-08 Score=80.65 Aligned_cols=177 Identities=9% Similarity=-0.092 Sum_probs=96.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHH
Q 015329 205 AYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR----RSWQANKLMG 280 (409)
Q Consensus 205 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~ 280 (409)
|+++|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+-..|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555542 44555555555555666666666666655544 34444455555544 4 5666666666
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHhHHHHHHHH
Q 015329 281 LMQRFGIEPDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYLCQ----EGDFNLAYIMCKD 351 (409)
Q Consensus 281 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~ 351 (409)
+..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 34444555555554 55666666666666655321 014555556666655 5566666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHhcCCC
Q 015329 352 SMKKNWVPSVDTISALLEGLKKN-N-----QPCKANTIMALVQRRVPH 393 (409)
Q Consensus 352 m~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 393 (409)
..+. ..+...+..|...|... | +.++|.+.+++..+.+.+
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 6554 12333455555555442 2 566666666666665543
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=1.4e-08 Score=82.32 Aligned_cols=165 Identities=10% Similarity=-0.045 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHH----------------HHHHHHhcCCHhHHHHHHHHHHHcC
Q 015329 223 TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNV----------------RIQHLVNKRRSWQANKLMGLMQRFG 286 (409)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~ 286 (409)
.+-.....+...|++++|+..|+...+.. +-+...|.. +..+|.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33444566788999999999999998863 234556666 8889999999999999999999885
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHHhCCCCCCH--H
Q 015329 287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD--FNLAYIMCKDSMKKNWVPSV--D 362 (409)
Q Consensus 287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~--~ 362 (409)
.. +...+..+...|...|++++|...|++..+.... +...+..+...|...|+ ...+...++... .|+. .
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQY 158 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhH
Confidence 33 7888999999999999999999999999987433 67788888888866554 344555555443 3443 3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
.+.....++...|++++|+..|++..+..|..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 44455667778899999999999999998864
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=3.2e-07 Score=78.35 Aligned_cols=219 Identities=7% Similarity=-0.071 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC--CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHH----Hhc---CCh
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR--DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF----CEM---GIL 202 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g~~ 202 (409)
++|+++++.++..+ +-...+|+.--..+...+ +++++..+++.+.....- +..+|+.--..+ ... +++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhccccCCH
Confidence 46666666666553 233344555555555555 555555555444433211 222233322222 222 444
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 282 (409)
++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ..+++++++++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~~~ 172 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVDKV 172 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHHHH
Confidence 5555555555544332 4444444444444444444 00444444444
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHhC
Q 015329 283 QRFGIEPDEVTYNLVIKGFCRSGH------LDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL-AYIMCKDSMKK 355 (409)
Q Consensus 283 ~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 355 (409)
.+..+. |...|+.-...+.+.|. ++++++.++.++..... |...|+..-..+.+.|+..+ +..+..+..+.
T Consensus 173 i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 173 IDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 444322 34444433333333333 55555555555554433 55555555555555555332 33344443332
Q ss_pred C--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 356 N--WVPSVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 356 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
+ -..+...+..+..+|.+.|+.++|.++++.+.+
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 1 123455556666666666666666666666554
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=1.4e-08 Score=95.94 Aligned_cols=154 Identities=8% Similarity=-0.015 Sum_probs=114.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329 199 MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL 278 (409)
Q Consensus 199 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 278 (409)
.|++++|++.|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876433 67888889999999999999999999998864 45678888899999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHhC
Q 015329 279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE---GDFNLAYIMCKDSMKK 355 (409)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 355 (409)
+++..+.... +...+..+..+|.+.|++++|.+.+++..+.... +...+..+..++... |++++|.+.+++.++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998887533 6778888999999999999999999998876433 677888888999888 9999999999988876
Q ss_pred C
Q 015329 356 N 356 (409)
Q Consensus 356 ~ 356 (409)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=3e-09 Score=102.44 Aligned_cols=185 Identities=8% Similarity=-0.113 Sum_probs=144.8
Q ss_pred hcCCCchhHHHHHHHhh--------hCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329 91 AGARRFDYIEHLLEHQK--------SLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE 162 (409)
Q Consensus 91 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 162 (409)
...|++++|++.+++.. ...+ .+...+..+...|...|++++|++.|++..+.+ +-+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999987 4433 356777788899999999999999999998764 4567889999999999
Q ss_pred cCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 015329 163 SRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNG 242 (409)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 242 (409)
.|++++|...|++..+.. +-+...|..+..+|.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998776542 2256778899999999999999 9999999986544 67889999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCC--------HhHHHHHHHHH
Q 015329 243 LWNLMVCKGCFPNLATFNVRIQHLVNKRR--------SWQANKLMGLM 282 (409)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~ 282 (409)
.|++..+.+ +-+...+..+..++...++ +++|.+.+..+
T Consensus 556 ~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999988753 3345667777777655444 44555544444
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=9.4e-08 Score=78.54 Aligned_cols=189 Identities=10% Similarity=0.081 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH----hh
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-P-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL----AT 258 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~ 258 (409)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+.+.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4455666777888999999999999999875332 1 13567778889999999999999999988763 322 13
Q ss_pred HHHHHHHHHh------------------cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 259 FNVRIQHLVN------------------KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 259 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
+..+..++.. .|++++|...|+++.+.... +...+..... . ..+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~----l------~~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKR----L------VFLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHH----H------HHHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHH----H------HHHHHHH---
Confidence 4444444443 34455555555555443211 1111111000 0 0000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329 321 RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS----VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS 396 (409)
Q Consensus 321 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 396 (409)
......+...|.+.|++++|...|+++++.. |+ ...+..+..++.+.|+.++|.+.++.+....|....
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0011345667889999999999999988763 33 256888889999999999999999999888776543
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=1.4e-08 Score=80.01 Aligned_cols=157 Identities=10% Similarity=-0.004 Sum_probs=67.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HHhcC
Q 015329 192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH-LVNKR 270 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~ 270 (409)
....+.+.|++++|...|++..+.... +...+..+...+...|++++|...++...... |+...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 334444455555555555444432211 33444444444555555555555554443321 122211111100 11111
Q ss_pred CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHH
Q 015329 271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP-NRKIYQTMIHYLCQEGDFNLAYIMC 349 (409)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 349 (409)
+..++...+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222344445554443211 34445555555555555555555555555443221 2334555555555555555555555
Q ss_pred HHH
Q 015329 350 KDS 352 (409)
Q Consensus 350 ~~m 352 (409)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=2e-08 Score=94.91 Aligned_cols=155 Identities=11% Similarity=-0.053 Sum_probs=120.0
Q ss_pred cCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 015329 163 SRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNG 242 (409)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 242 (409)
.|++++|...+++..+.. +-+...+..+...|...|++++|.+.|++..+.... +...+..+...+...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 467888999887765442 235778999999999999999999999999987543 68889999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 015329 243 LWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS---GHLDMAKKVYSAMLG 319 (409)
Q Consensus 243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 319 (409)
.+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998874 456788999999999999999999999999887533 678888999999999 999999999999987
Q ss_pred CCC
Q 015329 320 RRL 322 (409)
Q Consensus 320 ~~~ 322 (409)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 743
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=5.6e-09 Score=79.85 Aligned_cols=138 Identities=9% Similarity=-0.105 Sum_probs=60.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 015329 234 DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKV 313 (409)
Q Consensus 234 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 313 (409)
.|++++|+..+....... +-+...+..+...|.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHH
Confidence 344444444444443321 112233334444555555555555555555444321 344455555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329 314 YSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIM-CKDSMKKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 314 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g 375 (409)
|++..+.... +...|..+...|.+.|++++|.+. +++.++.. +-++.+|......+...|
T Consensus 88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 5555443221 344455555555555555443332 24433322 223334444334443333
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=1.3e-07 Score=80.95 Aligned_cols=165 Identities=10% Similarity=-0.064 Sum_probs=119.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHH-H
Q 015329 114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNI-V 192 (409)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l 192 (409)
+...+..+...+.+.|++++|.+.|++..+.. +-+...+..+...+...|++++|...+++.... .|+...... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 45556667788888899999999998887764 446677888888888888888888888776554 344433222 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCC
Q 015329 193 IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PNLATFNVRIQHLVNKRR 271 (409)
Q Consensus 193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~ 271 (409)
...+.+.++.+.|...|++....... +...+..+...+...|++++|...|..+.+..-. .+...+..+...+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 23466677778888888888776443 6777778888888888888888888888775311 125677778888888888
Q ss_pred HhHHHHHHHHHH
Q 015329 272 SWQANKLMGLMQ 283 (409)
Q Consensus 272 ~~~a~~~~~~~~ 283 (409)
.++|...|++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888877776654
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=1.7e-06 Score=73.83 Aligned_cols=227 Identities=9% Similarity=0.023 Sum_probs=159.8
Q ss_pred HHHHhcCCCc-hhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH---
Q 015329 87 VSRLAGARRF-DYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG--MIKHAMDTFYDMHLYGCKRTVKSLNAALKVL--- 160 (409)
Q Consensus 87 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--- 160 (409)
+.+..+.|.+ ++|+++++.+...++. ...+|+.--..+...| ++++++++++.+.... +-+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 3444455555 6899999999887654 5666776666677777 9999999999998875 45667787766655
Q ss_pred -Hcc---CCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 015329 161 -TES---RDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD--KAYLVMVEMQKLGVKPDVITYTTLISAFYKD 234 (409)
Q Consensus 161 -~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 234 (409)
... ++++.+..+++.+.... +-+..+|+.-...+.+.|.++ ++++.++++.+.... |...|+.-...+.+.
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 555 67888888888876653 346777888888888889988 999999999987765 888888776666666
Q ss_pred CC------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH-HHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcC
Q 015329 235 NR------PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ-ANKLMGLMQRFG--IEPDEVTYNLVIKGFCRSG 305 (409)
Q Consensus 235 ~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g 305 (409)
+. ++++++.++.+.... +-|...|+-.-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 65 667777777766654 4566667666666666666333 444555554332 1125566666666666667
Q ss_pred CHHHHHHHHHHHHh
Q 015329 306 HLDMAKKVYSAMLG 319 (409)
Q Consensus 306 ~~~~a~~~~~~m~~ 319 (409)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777766654
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=3.1e-08 Score=77.98 Aligned_cols=157 Identities=10% Similarity=-0.015 Sum_probs=69.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHH-HHhc
Q 015329 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKA-FCEM 199 (409)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~ 199 (409)
+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++....... +...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHHHHHhh
Confidence 4444555555555555555554432 23344555555555555555555555544433321 22221111111 1111
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHhHHHHH
Q 015329 200 GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP-NLATFNVRIQHLVNKRRSWQANKL 278 (409)
Q Consensus 200 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~ 278 (409)
++...|...|++..+.... +...+..+...+...|++++|...|+.+.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 1222344445554443222 34444555555555555555555555554432111 133444455555555555555555
Q ss_pred HHHH
Q 015329 279 MGLM 282 (409)
Q Consensus 279 ~~~~ 282 (409)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=7.2e-08 Score=78.32 Aligned_cols=128 Identities=8% Similarity=-0.137 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 015329 223 TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFC 302 (409)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 302 (409)
.+..+...+...|++++|...|++.. .|+...|..+...|...|++++|...+++..+... .+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34556667777888888888887663 55777788888888888888888888888776642 25677777888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 303 RSGHLDMAKKVYSAMLGRRLM--------------P-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 303 ~~g~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
..|++++|.+.|+...+.... | ....+..+..+|...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888887765322 1 1256677777778888888888888877765
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=1.2e-07 Score=77.85 Aligned_cols=188 Identities=11% Similarity=-0.039 Sum_probs=129.4
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHH
Q 015329 149 TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV--ITYT 225 (409)
Q Consensus 149 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~ 225 (409)
+...+..+...+...|+++.|...|+++.......|. ...+..+..+|.+.|++++|+..|+++.+....... ..+-
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667788899999999999999888766433332 457888899999999999999999999986433111 2444
Q ss_pred HHHHHHHH------------------cCChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 015329 226 TLISAFYK------------------DNRPEIGNGLWNLMVCKGCFPNL-ATFNVRIQHLVNKRRSWQANKLMGLMQRFG 286 (409)
Q Consensus 226 ~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 286 (409)
.+..++.. .|++++|...|+.+.+. .|+. ..+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 45555554 57899999999999886 3433 332221110 00111111
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP--NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
.....+...|.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112345677888999999999999988762221 12567788889999999999999999877763
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=6.5e-08 Score=82.73 Aligned_cols=164 Identities=9% Similarity=-0.023 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHH-HH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNV-RI 263 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll 263 (409)
+...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...++..... .|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 4455666666777777777777777777765433 5566667777777777777777777776554 233332222 22
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCH
Q 015329 264 QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~ 342 (409)
..+...++.+.|...+++..+... .+...+..+...+...|++++|...|.++.+.... .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 234556666667777777666542 25666667777777777777777777777665322 1245666777777777777
Q ss_pred hHHHHHHHHH
Q 015329 343 NLAYIMCKDS 352 (409)
Q Consensus 343 ~~a~~~~~~m 352 (409)
++|...+++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 7777666654
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=5.7e-09 Score=79.84 Aligned_cols=119 Identities=5% Similarity=-0.071 Sum_probs=54.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 015329 198 EMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANK 277 (409)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 277 (409)
..|++++|+..++........ +...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 344445555544444332111 12233334444555555555555555554432 2344455555555555555555555
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHh
Q 015329 278 LMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKV-YSAMLG 319 (409)
Q Consensus 278 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~ 319 (409)
.|++..+.... +...+..+...|.+.|+.++|.+. +++..+
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555444221 344455555555555555443332 344443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=6.2e-08 Score=83.80 Aligned_cols=218 Identities=9% Similarity=0.004 Sum_probs=149.9
Q ss_pred cCCHHHHHHHHHhcCcc-----CCCCcC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CHHHHHHHH
Q 015329 163 SRDLKAIQAFLMEVPEK-----FHIQFD----IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV---KP--DVITYTTLI 228 (409)
Q Consensus 163 ~~~~~~a~~~~~~~~~~-----~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~ll 228 (409)
.|++++|..++++..+. .++.++ ...|+.....|...|++++|.+.|.+..+... .+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888654321 112344 23577778889999999999999998875321 11 144788888
Q ss_pred HHHHHcCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---c--CHHHHHHHH
Q 015329 229 SAFYKDNRPEIGNGLWNLMVCK----GCFP-NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE---P--DEVTYNLVI 298 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---p--~~~~~~~li 298 (409)
..|.+.|++++|+..|++..+. |-.. -..++..+...|.. |++++|+..|++..+.... + ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8899999999999999887653 2111 13567778888888 9999999999988653211 1 145778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCC--HHHHHHHHH
Q 015329 299 KGFCRSGHLDMAKKVYSAMLGR----RLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN--WVPS--VDTISALLE 369 (409)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~--~~~~~~l~~ 369 (409)
..|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...|++.+ .. +... ......++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 8999999999999999988764 21111 2356667777778899999999999887 42 1111 123455556
Q ss_pred HHHhCCChHHHHHH
Q 015329 370 GLKKNNQPCKANTI 383 (409)
Q Consensus 370 ~~~~~g~~~~a~~~ 383 (409)
++ ..|+.+.+.++
T Consensus 242 ~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 242 AY-DEQDEEQLLRV 254 (307)
T ss_dssp HH-HTTCHHHHHHH
T ss_pred HH-HhcCHHHHHHH
Confidence 55 57787776664
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=1.1e-07 Score=77.22 Aligned_cols=163 Identities=14% Similarity=-0.066 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChhhHHHHHHHHHhcCCCCCHhhHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN----RPEIGNGLWNLMVCKGCFPNLATFN 260 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~ 260 (409)
+...+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|...|+...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56667777777777788888888888777754 45666666666666 5 7788888888777665 556666
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 261 VRIQHLVN----KRRSWQANKLMGLMQRFGIE-PDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQT 331 (409)
Q Consensus 261 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 331 (409)
.+-..|.. .+++++|...|++..+.|.. -+...+..|...|.. .+++++|...|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 67667766 77888888888888776532 125666777777777 77888888888888776 224445666
Q ss_pred HHHHHHHc-C-----CHhHHHHHHHHHHhCC
Q 015329 332 MIHYLCQE-G-----DFNLAYIMCKDSMKKN 356 (409)
Q Consensus 332 li~~~~~~-g-----~~~~a~~~~~~m~~~~ 356 (409)
|...|... | ++++|..+|+...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666543 3 7888888888877766
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=3.9e-07 Score=78.12 Aligned_cols=162 Identities=9% Similarity=-0.075 Sum_probs=87.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CC----HhhHHH
Q 015329 192 VIKAFCEMGILDKAYLVMVEMQKLGV-KPDV----ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PN----LATFNV 261 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ 261 (409)
.+..+...|++++|...+++..+... .++. ..+..+...+...+++++|+..++...+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 34555666666666666666655321 1121 12223444555555666666666666552211 11 224666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHH----c-CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 015329 262 RIQHLVNKRRSWQANKLMGLMQR----F-GIEPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPN-RKIYQ 330 (409)
Q Consensus 262 ll~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~ 330 (409)
+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666666652 1 11111 235566666677777777777666665432 22222 45666
Q ss_pred HHHHHHHHcCC-HhHHHHHHHHHH
Q 015329 331 TMIHYLCQEGD-FNLAYIMCKDSM 353 (409)
Q Consensus 331 ~li~~~~~~g~-~~~a~~~~~~m~ 353 (409)
.+..+|.+.|+ +++|.+.+++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66667777773 466766666554
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.4e-07 Score=81.49 Aligned_cols=194 Identities=9% Similarity=-0.022 Sum_probs=139.1
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHhcCcc---CCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC--H
Q 015329 151 KSLNAALKVLTESRDLKAIQAFLMEVPEK---FHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLG---VKPD--V 221 (409)
Q Consensus 151 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~--~ 221 (409)
..|+.....|...|+++.|...+.+...- .+-... ..+|+.+...|...|++++|+..|++..+.- -.+. .
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36788888899999999999998765433 221111 4578889999999999999999999876531 1111 4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---C--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCcC-H
Q 015329 222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF---P--NLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEPD-E 291 (409)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~ 291 (409)
.++..+...|.. |++++|+..|++..+.... + ...++..+...|.+.|++++|+..|++..+. +..++ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 567788888888 9999999999988764211 1 1467888899999999999999999998763 22121 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH---HHHHHHHHHHHHcCCHhHHHH
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PNR---KIYQTMIHYLCQEGDFNLAYI 347 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~---~~~~~li~~~~~~g~~~~a~~ 347 (409)
..+..+...+...|++++|...|++.. .... ++. .....++.++ ..|+.+.+.+
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 356677778888899999999999988 5211 111 2344455555 5677666555
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=1.2e-06 Score=75.13 Aligned_cols=163 Identities=10% Similarity=-0.012 Sum_probs=120.7
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhcC-CCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-cC----HHHHHH
Q 015329 227 LISAFYKDNRPEIGNGLWNLMVCKG-CFPNL----ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-PD----EVTYNL 296 (409)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 296 (409)
.+..+...|++++|..+++...+.. ..|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4567788999999999999987743 22332 23445677777788999999999999874322 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCC-HHHHH
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGR-----RLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWVPS-VDTIS 365 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~ 365 (409)
+...|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999988742 1122 2346788889999999999999998887643 22222 67888
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHHh
Q 015329 366 ALLEGLKKNNQ-PCKANTIMALVQR 389 (409)
Q Consensus 366 ~l~~~~~~~g~-~~~a~~~~~~~~~ 389 (409)
.+..++.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999995 6999998888764
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=5.6e-07 Score=72.96 Aligned_cols=127 Identities=6% Similarity=-0.164 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
+..+...+...|++++|...|++.. .|+...|..+...+...|++++|...++...+.. +.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555556666666666665542 3455556666666666666666666666655543 3345556666666666
Q ss_pred cCCHhHHHHHHHHHHHcCCC--------------c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 269 KRRSWQANKLMGLMQRFGIE--------------P-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
.|++++|...|++..+.... | ....+..+..+|.+.|++++|.+.|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666666553211 1 1255666777777777777777777777765
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=1.4e-05 Score=73.68 Aligned_cols=310 Identities=10% Similarity=-0.034 Sum_probs=181.0
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCC-chhHHHHHHHhhh-CCC-CCChhHHHHHHHHHH----hcCC
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARR-FDYIEHLLEHQKS-LPQ-GRREGFIMRIMMLYG----KAGM 130 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~-~~~-~~~~~~~~~l~~~~~----~~~~ 130 (409)
++.+.+.++|++....- |+...|...+....+.+. .+.+..+|+.... .|. ..+..+|...+..+. .+++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 78888999999888754 677788777776666553 3566777776653 232 235677776666543 3456
Q ss_pred hHHHHHHHHHhhhcCCCCCHHhHHHH------------------------------------------------HHHHHc
Q 015329 131 IKHAMDTFYDMHLYGCKRTVKSLNAA------------------------------------------------LKVLTE 162 (409)
Q Consensus 131 ~~~a~~~~~~m~~~~~~~~~~~~~~l------------------------------------------------l~~~~~ 162 (409)
++.+.++|++........-...|... +.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 77888888888763211001112111 111000
Q ss_pred c--CC-----HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329 163 S--RD-----LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN 235 (409)
Q Consensus 163 ~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 235 (409)
. +- .+.+..+|++..... +.+...|...+..+.+.|+++.|.++|++.... +.+...|. .|+...
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~ 256 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVM 256 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhc
Confidence 0 00 122334444433321 223555666666667777777777777777766 22222222 222222
Q ss_pred ChhhHHHHHHHHHhcC---------C---CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 015329 236 RPEIGNGLWNLMVCKG---------C---FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR 303 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~---------~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 303 (409)
+.++. ++.+.+.- . ......|...+....+.++.+.|..+|+.. +.. ..+...|......-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence 22221 22222110 0 011244555666666678899999999988 321 2244444332222222
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 015329 304 -SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT 382 (409)
Q Consensus 304 -~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 382 (409)
.++.+.|..+|+...+.- .-+...+...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+.+
T Consensus 332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 336999999999988752 1234556667777788899999999999862 256788888887788899999999
Q ss_pred HHHHHHh
Q 015329 383 IMALVQR 389 (409)
Q Consensus 383 ~~~~~~~ 389 (409)
++++..+
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=8.3e-07 Score=74.17 Aligned_cols=198 Identities=8% Similarity=-0.106 Sum_probs=135.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCChhhHHHHHHHHHhcCCCCC---------------
Q 015329 198 EMGILDKAYLVMVEMQKLGVKPDVITYTTL-------ISAFYKDNRPEIGNGLWNLMVCKGCFPN--------------- 255 (409)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------- 255 (409)
..++...|.+.|.+..+.... ....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888888888888876543 56667666 4555555555555555444433 1221
Q ss_pred -------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 015329 256 -------LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN--R 326 (409)
Q Consensus 256 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~ 326 (409)
....-.....+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345667778899999999998887654 443355556667888899999999997554431 111 2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHH
Q 015329 327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS--VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFK 403 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 403 (409)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....|. ......|.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~ 248 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence 3567778888899999999999998775433243 346667778888999999999999999988877 55555543
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=2.3e-06 Score=73.33 Aligned_cols=166 Identities=9% Similarity=-0.101 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC---CCC--Hh
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV-----ITYTTLISAFYKDNRPEIGNGLWNLMVCKGC---FPN--LA 257 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~ 257 (409)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|+..++...+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455666777788888888888777664322111 1223344455566677777777776654321 111 34
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHH---c-CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQR---F-GIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMP-NR 326 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 326 (409)
+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 666667777777777777777776652 1 1111 1246666666777777777777777665432 1111 14
Q ss_pred HHHHHHHHHHHHcCCHhHH-HHHHHHHH
Q 015329 327 KIYQTMIHYLCQEGDFNLA-YIMCKDSM 353 (409)
Q Consensus 327 ~~~~~li~~~~~~g~~~~a-~~~~~~m~ 353 (409)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566666667777777777 55555443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=5.8e-07 Score=69.51 Aligned_cols=129 Identities=11% Similarity=-0.010 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL 336 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 336 (409)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34455555666666666666666666554322 455666666666667777777777766665432 2455666666667
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhCCChHHHHHHHHHHH
Q 015329 337 CQEGDFNLAYIMCKDSMKKNWVPSVDTISAL--LEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~ 388 (409)
...|++++|...+++..+.. +.+...+..+ ...+.+.|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777666543 2334444322 233556677777777766554
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=5.5e-08 Score=82.87 Aligned_cols=196 Identities=9% Similarity=-0.021 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4566777888888888888888888888875433 67788888888888889999988888888763 446677888888
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 344 (409)
+|...|++++|...|++..+.+.. +...+...+....+. .++. -+..........+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888889999998888887654211 000111111111111 1111 1122222333334444433322 2 2688888
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhC-CChHHHHHHHHHHHhcC
Q 015329 345 AYIMCKDSMKKNWVPSVD-TISALLEGLKKN-NQPCKANTIMALVQRRV 391 (409)
Q Consensus 345 a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 391 (409)
|.+.+++..+. .|+.. ....+...+.+. +.+++|.++|.++.+..
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 88888877665 34443 333343444444 56788888888876543
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=7.2e-07 Score=68.94 Aligned_cols=128 Identities=8% Similarity=-0.035 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
..+..+...+...|++++|...|++..+.... +..++..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44566666677777777777777776664322 45666666666667777777777776666653 33455666666666
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 015329 267 VNKRRSWQANKLMGLMQRFGIEPDEVTY--NLVIKGFCRSGHLDMAKKVYSAM 317 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m 317 (409)
...|++++|...+++..+.... +...+ ......+.+.|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666654322 33333 22223345556666666655543
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=1.1e-05 Score=69.80 Aligned_cols=140 Identities=10% Similarity=-0.066 Sum_probs=73.0
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC-CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc-C-Ch
Q 015329 126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR-DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM-G-IL 202 (409)
Q Consensus 126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~ 202 (409)
.+.+..++|++++++++..+ +-+..+|+.--..+...+ .++++..+++.+.... +-+..+|+.-...+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCCh
Confidence 33444567777777777654 334455666655555555 3566666665554331 22344455555555554 4 56
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh--------hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE--------IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
++++++++.+.+...+ +..+|+--.-.+.+.|.++ ++++.++.+.+.. +-|...|+.....+.+.+
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6666666666655433 5555554444444444444 4555555554442 334444444444444444
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=4e-07 Score=67.07 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL 371 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 371 (409)
..+......|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34556666777777777777777777665332 56677777777777777777777777776654 45566777777777
Q ss_pred HhCCChHHHHHHHHHHHhcCCCC
Q 015329 372 KKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
...|++++|.+.|++..+..|.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCC
Confidence 77777777777777777776654
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=9.2e-07 Score=70.96 Aligned_cols=155 Identities=10% Similarity=-0.108 Sum_probs=74.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CC-CCCHhhHHHHHHHHHhcCCH
Q 015329 198 EMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK----GC-FPNLATFNVRIQHLVNKRRS 272 (409)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~ 272 (409)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +. .....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123444555555555555555555555554431 11 11234455555566666666
Q ss_pred hHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCC
Q 015329 273 WQANKLMGLMQRF----GIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLM-PNRKIYQTMIHYLCQEGD 341 (409)
Q Consensus 273 ~~a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~ 341 (409)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666555332 1111 1234555555666666666666666655432 100 011224555566666666
Q ss_pred HhHHHHHHHHHH
Q 015329 342 FNLAYIMCKDSM 353 (409)
Q Consensus 342 ~~~a~~~~~~m~ 353 (409)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=1e-06 Score=64.25 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
...+..+...+...|++++|.++|+++.+... .+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34555566666666666666666666655432 244555555566666666666666666655542 3344555555555
Q ss_pred HHhcCCHhHHHHHHHHHHHc
Q 015329 266 LVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~ 285 (409)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666555544
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=1.6e-06 Score=74.26 Aligned_cols=168 Identities=9% Similarity=-0.020 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CcC--H
Q 015329 222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-----LATFNVRIQHLVNKRRSWQANKLMGLMQRFGI---EPD--E 291 (409)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~ 291 (409)
..+...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566778899999999999998877532211 12344456677788999999999999875422 122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-C
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMPN-----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWVP-S 360 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~ 360 (409)
.+++.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++.++. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58899999999999999999999998732 11122 257889999999999999999999987653 1111 2
Q ss_pred HHHHHHHHHHHHhCCChHHH-HHHHHHHHh
Q 015329 361 VDTISALLEGLKKNNQPCKA-NTIMALVQR 389 (409)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 389 (409)
..+|..+..+|.+.|+.++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67888999999999999999 777877653
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=9.3e-07 Score=65.06 Aligned_cols=98 Identities=11% Similarity=-0.041 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
...+......|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..++...+.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 344666667777777777777777777665433 56666667777777777777777777766653 3455666666667
Q ss_pred HHhcCCHhHHHHHHHHHHHc
Q 015329 266 LVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~ 285 (409)
+...|++++|...|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777766665
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=2.8e-07 Score=72.41 Aligned_cols=120 Identities=7% Similarity=-0.006 Sum_probs=61.2
Q ss_pred HcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCH--HH
Q 015329 233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG-FCRSGHL--DM 309 (409)
Q Consensus 233 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 309 (409)
..|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455556666665555542 334455555555666666666666666655544321 34444455555 4455555 55
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 310 AKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 310 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
|...++...+.... +...+..+...|...|++++|...|++.++.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66555555544221 3445555555555555555555555555544
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=1e-06 Score=64.26 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=9.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHH
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDS 352 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m 352 (409)
+..+...+...|++++|...++++
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333333333333333333333333
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=3.3e-07 Score=69.77 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329 294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK 373 (409)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 373 (409)
+..+...+.+.|++++|...|+........ +...|..+..+|...|++++|...|++.++.. +.+...|..+..+|.+
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 334444444445555555555544443221 34444444444555555555555555444432 2234444444455555
Q ss_pred CCChHHHHHHHHHHHhcCC
Q 015329 374 NNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~ 392 (409)
.|++++|.+.|+++.+..+
T Consensus 117 lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 5555555555555544443
No 134
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=3.2e-05 Score=66.87 Aligned_cols=175 Identities=7% Similarity=-0.057 Sum_probs=119.6
Q ss_pred hcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHcc-C-CHH
Q 015329 91 AGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG-MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTES-R-DLK 167 (409)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~-~~~ 167 (409)
...+..++|+++++.+...++. ...+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 3444556899999998877654 5666665555556667 5999999999998765 55677888877777766 6 777
Q ss_pred HHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---
Q 015329 168 AIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD--------KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR--- 236 (409)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--- 236 (409)
.+..+++.+.... +-+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 8888887776553 335666766666666666666 889999999887655 78888887777777665
Q ss_pred ----hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 015329 237 ----PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR 271 (409)
Q Consensus 237 ----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 271 (409)
++++++.++...... +-|...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 455666666655543 3455555554444444443
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=1.3e-07 Score=72.02 Aligned_cols=99 Identities=13% Similarity=0.091 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 372 (409)
.+..+...+.+.|++++|...|+........ +...|..+..+|...|++++|...|++.++.. +.+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444444555555555555555555443221 44445555555555555555555555554432 233445555555555
Q ss_pred hCCChHHHHHHHHHHHhcCCC
Q 015329 373 KNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~ 393 (409)
..|++++|.+.+++..+..|.
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHCcC
Confidence 555555555555555554443
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1.3e-06 Score=66.41 Aligned_cols=104 Identities=7% Similarity=-0.083 Sum_probs=76.0
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|...|++..+.... +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 3456666777777888888888888888776432 6777777888888888888888888887776433 5567777788
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 015329 335 YLCQEGDFNLAYIMCKDSMKKNWVPSVD 362 (409)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 362 (409)
+|...|++++|...|++.++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888888888888888877765 35543
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=1.3e-06 Score=64.33 Aligned_cols=117 Identities=12% Similarity=0.010 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL 336 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 336 (409)
..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++...+... .+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 3344444444455555555555555444321 1344444445555555555555555555444321 1344444555555
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 337 CQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555544432 2234444444444444443
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.65 E-value=1.5e-06 Score=63.97 Aligned_cols=118 Identities=7% Similarity=-0.059 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
...+..+...+...|++++|...|++....... +...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 445566666666667777777776666654322 45556666666666666666666666665542 3344555555566
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 015329 266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGH 306 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 306 (409)
+...|++++|...+++..+.... +...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 66666666666666665554321 34445555555554443
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=9.7e-07 Score=73.77 Aligned_cols=189 Identities=10% Similarity=-0.079 Sum_probs=126.0
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCccchHHHH-------HHHHhcCCCchhHHHHHHHhhhCCC-----------------
Q 015329 56 AERDPEKLFQLFKANAHNRIVIENKYAFEDT-------VSRLAGARRFDYIEHLLEHQKSLPQ----------------- 111 (409)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~----------------- 111 (409)
..++++.|.+.|..+.+.+ +-....|..+ ...+.+.++..++...+.......+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 4689999999999998887 3444567666 4555555555666555555443111
Q ss_pred ---CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC--H
Q 015329 112 ---GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD--I 186 (409)
Q Consensus 112 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 186 (409)
.....+...+...+...|++++|.++|+.+...+ |+......+...+.+.+++++++..|+..... . .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHH
Confidence 0013344456777888899999999998887643 43335555666788888888888888543221 1 111 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--VITYTTLISAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
..+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3566777888888888888888888875332243 334555667777888888888888888775
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=4.2e-07 Score=72.99 Aligned_cols=159 Identities=9% Similarity=-0.055 Sum_probs=117.4
Q ss_pred HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCC
Q 015329 232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEP-DEVTYNLVIKGFCRSGH 306 (409)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~ 306 (409)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+. +..+ ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966655442 2246678888999999999999999999988652 2222 35677888889999999
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhCC
Q 015329 307 LDMAKKVYSAMLGR----RLMP--NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWV-PSVDTISALLEGLKKNN 375 (409)
Q Consensus 307 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g 375 (409)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. ....++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987654 2111 2345778888999999999999999987643 211 11234677889999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 015329 376 QPCKANTIMALVQRRV 391 (409)
Q Consensus 376 ~~~~a~~~~~~~~~~~ 391 (409)
++++|.+.+++..+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999876544
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=1.3e-06 Score=64.50 Aligned_cols=117 Identities=9% Similarity=-0.070 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 4556667777777777777777777777765332 55666666666667777777777777666643 334556666666
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329 265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS 304 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 304 (409)
++...|++++|...|++..+.... +...+..+...+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 666667777777666666554321 233444444444433
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=9.9e-07 Score=65.22 Aligned_cols=92 Identities=14% Similarity=-0.005 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329 259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ 338 (409)
Q Consensus 259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 338 (409)
+..+...+...|++++|...+++..+.... +...+..+...|...|++++|.+.+++..+.... +...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 333333333344444444444433332111 2333333333333444444444444433332111 23333333334444
Q ss_pred cCCHhHHHHHHHHH
Q 015329 339 EGDFNLAYIMCKDS 352 (409)
Q Consensus 339 ~g~~~~a~~~~~~m 352 (409)
.|++++|.+.|++.
T Consensus 97 ~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 97 MKDYTKAMDVYQKA 110 (133)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 44444444444433
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=1.5e-06 Score=75.99 Aligned_cols=132 Identities=7% Similarity=-0.042 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC--------------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN--------------LATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
+...+..+...+.+.|++++|...|++..+..-... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777778888888888888888888877531111 356666666667777777777777766665
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH-HHHHHHHH
Q 015329 286 GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA-YIMCKDSM 353 (409)
Q Consensus 286 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 353 (409)
... +...|..+..+|...|++++|...|++..+.... +...+..+..++...|+.++| ..+++.|.
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 422 5566666666666677777777777666655322 455566666666666666666 33444443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=7.4e-07 Score=69.96 Aligned_cols=121 Identities=5% Similarity=-0.019 Sum_probs=88.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HHhcCCH--h
Q 015329 197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH-LVNKRRS--W 273 (409)
Q Consensus 197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~--~ 273 (409)
...|++++|...+++..+.... +...|..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567788888888887765432 66778888888888888888888888887753 3456667777777 6778887 8
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
+|...+++..+.... +...+..+...|...|++++|...|+...+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888776432 5677777888888888888888888888776
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=2.2e-06 Score=75.01 Aligned_cols=132 Identities=11% Similarity=-0.061 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--------------VITYTTLISAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
+...+..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++...+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355677788888888888888888888887543321 478888888999999999999999998886
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015329 251 GCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMA-KKVYSAML 318 (409)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 318 (409)
. +.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.++| ..+|..|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 457788888899999999999999999998887533 677788888888888888888 44666654
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=9.6e-07 Score=63.00 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP--SVDTISALLE 369 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~ 369 (409)
..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34455666666777777777777776655322 55667777777777777888877777777653 33 5677777777
Q ss_pred HHHhC-CChHHHHHHHHHHHhcCCCCC
Q 015329 370 GLKKN-NQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 370 ~~~~~-g~~~~a~~~~~~~~~~~~~~~ 395 (409)
++.+. |++++|.+.++.+.+..|+.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888777776553
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.3e-06 Score=64.13 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 372 (409)
.+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|...+++.++.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444455555555555555555443221 34455555555555555555555555555443 334445555555555
Q ss_pred hCCChHHHHHHHHHHHhcC
Q 015329 373 KNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~ 391 (409)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 5555555555555555544
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=2e-06 Score=66.50 Aligned_cols=99 Identities=8% Similarity=-0.006 Sum_probs=74.5
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4566777777888888888888888888776432 6677777788888888888888888887766433 5677777888
Q ss_pred HHHHcCCHhHHHHHHHHHHhC
Q 015329 335 YLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~~ 355 (409)
+|...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877664
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=1.2e-06 Score=66.57 Aligned_cols=87 Identities=9% Similarity=-0.094 Sum_probs=32.4
Q ss_pred HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329 229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD 308 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (409)
..+...|++++|...|+...... +.+...|..+..+|...|++++|...|++..+.... +...+..+..+|...|+++
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 106 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQXGELA 106 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHH
Confidence 33333344444444443333321 223333333333334444444444444443333211 2233333333444444444
Q ss_pred HHHHHHHHH
Q 015329 309 MAKKVYSAM 317 (409)
Q Consensus 309 ~a~~~~~~m 317 (409)
+|...|+..
T Consensus 107 ~A~~~~~~a 115 (148)
T 2vgx_A 107 EAESGLFLA 115 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=1.4e-06 Score=65.67 Aligned_cols=95 Identities=9% Similarity=-0.046 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 375 (409)
.+...+.+.|++++|...|+........ +...|..+..+|...|++++|...|++.++.+ +.+...+..+..+|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3344444455555555555544443221 34444444445555555555555555544432 233344444445555555
Q ss_pred ChHHHHHHHHHHHhcCC
Q 015329 376 QPCKANTIMALVQRRVP 392 (409)
Q Consensus 376 ~~~~a~~~~~~~~~~~~ 392 (409)
++++|.+.++.+.+..|
T Consensus 101 ~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 101 DLDGAESGFYSARALAA 117 (142)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 55555555555544443
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=9.5e-07 Score=75.17 Aligned_cols=63 Identities=8% Similarity=-0.096 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
...|..+...|.+.|++++|+..+++..+.... +...+..+..++...|++++|...|+...+
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555554443222 344444455555555555555555554443
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=1.1e-05 Score=57.97 Aligned_cols=93 Identities=16% Similarity=0.070 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
+...+...|++++|...++....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 33333444444444444444333211 133333444444444444444444444433322 2233344444444444444
Q ss_pred hHHHHHHHHHHHhcC
Q 015329 377 PCKANTIMALVQRRV 391 (409)
Q Consensus 377 ~~~a~~~~~~~~~~~ 391 (409)
+++|.+.+++..+..
T Consensus 88 ~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 88 FEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 444444444444433
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=1.7e-06 Score=64.51 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG 370 (409)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 370 (409)
...+..+...+...|++++|...|+........ +...|..+..++...|++++|...+++.++.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444444444444555554444444443211 33444444444445555555555554444432 2234444444455
Q ss_pred HHhCCChHHHHHHHHHHHhcC
Q 015329 371 LKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~ 391 (409)
+...|++++|.+.++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 555555555555555444433
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=4.2e-06 Score=60.13 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=92.5
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
+...+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+++..+.... +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 456778888999999999999999999988753 26788888999999999999999999999876432 6788899999
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 335 YLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE 369 (409)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 369 (409)
++...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 9999999999999999988764 344555544433
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=0.00011 Score=63.06 Aligned_cols=185 Identities=6% Similarity=-0.068 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC-HhHHHHHH
Q 015329 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN--RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR-SWQANKLM 279 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~ 279 (409)
++++.+++.+.....+ +..+|+.-...+.+.+ .+++++.+++.+.+.. +-|...|+.-.-.+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3444444444443322 4444444333333434 2444455555444432 3344444444444444444 34455555
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc------
Q 015329 280 GLMQRFGIEPDEVTYNLVIKGFCRS--------------GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE------ 339 (409)
Q Consensus 280 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------ 339 (409)
..+.+..+. |...|+.....+.+. +.++++++.+......... |...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 555444322 344443333333322 2345566666655554322 445554333333332
Q ss_pred -----CCHhHHHHHHHHHHhCCCCCCH-HHHHHHH---HHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 340 -----GDFNLAYIMCKDSMKKNWVPSV-DTISALL---EGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 340 -----g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
+.++++++.++++.+. .|+. -++..++ .+....|..+++...+.++++.+|-
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 3456777777777664 3433 1221111 1222456677778888888777643
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=7.8e-06 Score=59.92 Aligned_cols=97 Identities=12% Similarity=-0.037 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
..+..+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..++...+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 44555566666666666666666666654322 45566666666666666666666666666543 33455556666666
Q ss_pred HhcCCHhHHHHHHHHHHHc
Q 015329 267 VNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~ 285 (409)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=5.7e-07 Score=72.11 Aligned_cols=88 Identities=13% Similarity=-0.073 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL 371 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 371 (409)
..+..+..+|.+.|++++|...++...+... .+...+..+..+|...|++++|...|++.++.. +-+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 4555566666666666666666666665422 245566666666666666666666666665543 33455555555555
Q ss_pred HhCCChHHHH
Q 015329 372 KKNNQPCKAN 381 (409)
Q Consensus 372 ~~~g~~~~a~ 381 (409)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 158
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.44 E-value=0.00013 Score=67.16 Aligned_cols=100 Identities=7% Similarity=-0.032 Sum_probs=70.1
Q ss_pred CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHhhhc-CC-CCCHHh
Q 015329 76 VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGM-IKHAMDTFYDMHLY-GC-KRTVKS 152 (409)
Q Consensus 76 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-~~-~~~~~~ 152 (409)
+..-..+|...+..+-. |+++.+..+|+.....- |+...|...+....+.+. .+....+|+..... |. ..+...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 33444667777777755 88999999999998753 488898888877777663 45677788877653 43 346678
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHhcCc
Q 015329 153 LNAALKVLTE----SRDLKAIQAFLMEVPE 178 (409)
Q Consensus 153 ~~~ll~~~~~----~~~~~~a~~~~~~~~~ 178 (409)
|...+..+.. .++.+.+..+|+....
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 8888876543 3567889999977754
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.43 E-value=2.6e-06 Score=62.14 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 376 (409)
+...+.+.|++++|...|+...+.... +...|..+..++...|++++|+..|++.++.. +-+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334455555555555555555544221 44555555555555555555555555555543 3344455555555555566
Q ss_pred hHHHHHHHHHHHhcCCC
Q 015329 377 PCKANTIMALVQRRVPH 393 (409)
Q Consensus 377 ~~~a~~~~~~~~~~~~~ 393 (409)
+++|.+.++++.+..|.
T Consensus 101 ~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 66666666555555443
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=7.9e-06 Score=60.09 Aligned_cols=57 Identities=5% Similarity=-0.073 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
.+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|++.+++.+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444433211 33344444444444444444444444433
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=0.00011 Score=63.22 Aligned_cols=203 Identities=8% Similarity=-0.073 Sum_probs=149.8
Q ss_pred HHHHHHHHH---HHhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hhhHHHHHHHHHhcCC
Q 015329 187 FSFNIVIKA---FCEMGILD-KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR----------PEIGNGLWNLMVCKGC 252 (409)
Q Consensus 187 ~~~~~ll~~---~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~ 252 (409)
..|..++.. ..+.|.++ +|+++++.+...+.. +..+|+.--..+...+. +++++.+++.+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~- 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN- 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-
Confidence 344444432 34566665 789999998886543 45556544333333332 678889999988864
Q ss_pred CCCHhhHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHH
Q 015329 253 FPNLATFNVRIQHLVNKR--RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGH-LDMAKKVYSAMLGRRLMPNRKIY 329 (409)
Q Consensus 253 ~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~ 329 (409)
+-+..+|+.-.-.+...+ ++++++.+++.+.+.... |...|+.-.-.+...|. ++++++.++.+++..+. |...|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 567888888777777888 489999999999988654 88888877777788888 59999999999988665 88888
Q ss_pred HHHHHHHHHc--------------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----------CChHHHHHHH
Q 015329 330 QTMIHYLCQE--------------GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN-----------NQPCKANTIM 384 (409)
Q Consensus 330 ~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~ 384 (409)
+.....+... +.++++++.+++.+... +-|...|+.+-..+.+. +.++++++.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 8777666655 45788999999988765 56677776655555554 4578999999
Q ss_pred HHHHhcCCCC
Q 015329 385 ALVQRRVPHF 394 (409)
Q Consensus 385 ~~~~~~~~~~ 394 (409)
+++.+..|++
T Consensus 262 ~elle~~pd~ 271 (331)
T 3dss_A 262 KELQELEPEN 271 (331)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHhhCccc
Confidence 9999999876
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=8.5e-06 Score=59.92 Aligned_cols=98 Identities=8% Similarity=-0.017 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CCC----HhhHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC--FPN----LATFN 260 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 260 (409)
..+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..++...+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34566667777777777777777777665432 456666666777777777777777766654310 011 12444
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
.+..++...|++++|++.|++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555666666666666655543
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3e-05 Score=70.21 Aligned_cols=119 Identities=3% Similarity=-0.225 Sum_probs=52.4
Q ss_pred cCCHhHHHHHHHHHHH----cCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHH
Q 015329 269 KRRSWQANKLMGLMQR----FGIEPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR--RL--MP-NRKIYQTMIHYLCQ 338 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--~p-~~~~~~~li~~~~~ 338 (409)
.|+.+.+..++..... .+..+. ..++..+...|...|++++|..++++.... +. .+ ...++..++..|..
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4455555555544422 111111 234445555555555555555555544322 11 11 12344555555555
Q ss_pred cCCHhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329 339 EGDFNLAYIMCKDSMKK--NWVPS----VDTISALLEGLKKNNQPCKANTIMALV 387 (409)
Q Consensus 339 ~g~~~~a~~~~~~m~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 387 (409)
.|++++|..++++.... .+..+ ...+..+...+...|++++|...+.+.
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555555555544321 11111 123334444445555555555554444
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=1.1e-05 Score=64.39 Aligned_cols=98 Identities=8% Similarity=-0.047 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PD--------------VITYTTLISAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
...+..+...+...|++++|+..|++..+.... ++ ...|..+..++.+.|++++|+..++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666677777888888888888877764221 10 133334444444444444444444444433
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329 251 GCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 284 (409)
. +.+...+..+..+|...|++++|...|++..+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 22333344444444444444444444444433
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=6.9e-06 Score=60.26 Aligned_cols=98 Identities=7% Similarity=-0.022 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CCC----HhhHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC--FPN----LATFN 260 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 260 (409)
..+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++....... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3455566666666666666666666665432 2455556666666666666666666666554321 111 44455
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
.+..++...|++++|...|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555666666666666555554
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.3e-05 Score=58.97 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTM 332 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 332 (409)
..+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...++...+.... +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 33344444444444444444444444433 122 233344444444444444444444444333111 23334444
Q ss_pred HHHHHHcCCHhHHHHHHHHHHh
Q 015329 333 IHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 333 i~~~~~~g~~~~a~~~~~~m~~ 354 (409)
..++...|++++|...|++.++
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.4e-05 Score=60.19 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTIS 365 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 365 (409)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5778888899999999999999999999876 455 6778889999999999999999999988764 45678889
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329 366 ALLEGLKKNNQPCKANTIMALVQRRVPHFS 395 (409)
Q Consensus 366 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 395 (409)
.+..++...|++++|.+.+++..+..|...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 999999999999999999999998876553
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=1e-05 Score=60.79 Aligned_cols=97 Identities=8% Similarity=-0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
..+..+...+.+.|++++|...|++....... +...|..+..++...|++++|...|+...... +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34555556666777777777777776665432 55666666666666777777777776666653 33455566666666
Q ss_pred HhcCCHhHHHHHHHHHHHc
Q 015329 267 VNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~ 285 (409)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6667777666666666544
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=6.2e-06 Score=58.63 Aligned_cols=96 Identities=10% Similarity=0.012 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC--CHhhHHHHHHH
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP--NLATFNVRIQH 265 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~ 265 (409)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 3444555555555666666655555543322 34445555555555555555555555555432 22 34445555555
Q ss_pred HHhc-CCHhHHHHHHHHHHHc
Q 015329 266 LVNK-RRSWQANKLMGLMQRF 285 (409)
Q Consensus 266 ~~~~-~~~~~a~~~~~~~~~~ 285 (409)
+... |++++|.+.++...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555444
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=1.7e-05 Score=58.87 Aligned_cols=98 Identities=8% Similarity=-0.140 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3445555555556666666666666655554322 34455555555555555555555555555442 223445555555
Q ss_pred HHHhcCCHhHHHHHHHHHHH
Q 015329 265 HLVNKRRSWQANKLMGLMQR 284 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~ 284 (409)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555443
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=2.2e-05 Score=60.54 Aligned_cols=99 Identities=8% Similarity=-0.118 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ 264 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 264 (409)
+...+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|+...+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445556666666666666666666666654322 45555555555666666666666665555543 233455555555
Q ss_pred HHHhcCCHhHHHHHHHHHHHc
Q 015329 265 HLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~ 285 (409)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 555555555555555555443
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=1.2e-05 Score=58.96 Aligned_cols=108 Identities=9% Similarity=0.032 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 015329 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL--MPN----RKIYQ 330 (409)
Q Consensus 257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~ 330 (409)
..+..+...+...|++++|...|++..+... .+...+..+...|...|++++|...++...+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455666666667777777777776665532 2455666666666667777777776666655421 111 45556
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 331 TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISAL 367 (409)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 367 (409)
.+..++...|++++|.+.|++..+. .|+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6666666666666666666666554 2444444443
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2e-05 Score=71.44 Aligned_cols=198 Identities=7% Similarity=-0.043 Sum_probs=132.9
Q ss_pred HhhhhcCChHHHHHHHHHhhcCCCCCCcc---------------chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh-
Q 015329 52 VKLKAERDPEKLFQLFKANAHNRIVIENK---------------YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE- 115 (409)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 115 (409)
..+...|++++|++.|..+.+...-..+. .++..+...|...|++++|.+.+..+.........
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45678899999999999998765322222 13667888899999999999998887643222221
Q ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCC----C
Q 015329 116 ----GFIMRIMMLYGKAGMIKHAMDTFYDMHLY----GCKR-TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH----I 182 (409)
Q Consensus 116 ----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~ 182 (409)
.+.+.+-..+...|+++.|.+++...... +..+ ...++..+...+...|+++.|..++++...... -
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12223334455678889999888876532 2222 245677888889999999888888765433211 1
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL--GVK-P-D--VITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~-~-~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
.-...++..++..|...|++++|...+++.... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112556888888999999999999988877642 111 1 1 23455666667778888888877766643
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=2.4e-05 Score=57.41 Aligned_cols=90 Identities=8% Similarity=-0.001 Sum_probs=39.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 015329 263 IQHLVNKRRSWQANKLMGLMQRFGIEPDE---VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN---RKIYQTMIHYL 336 (409)
Q Consensus 263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~ 336 (409)
...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+...+.... + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 34444455555555555555443211 11 23344444444555555555555544443211 1 33344444444
Q ss_pred HHcCCHhHHHHHHHHHHh
Q 015329 337 CQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~ 354 (409)
...|++++|...|+++++
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444555555544444443
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.25 E-value=1.1e-05 Score=62.08 Aligned_cols=99 Identities=13% Similarity=0.008 Sum_probs=55.4
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc--------CC---------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329 256 LATFNVRIQHLVNKRRSWQANKLMGLMQRF--------GI---------EPDEVTYNLVIKGFCRSGHLDMAKKVYSAML 318 (409)
Q Consensus 256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 318 (409)
...+......+.+.|++++|...|.+..+. .. +.+...|..+..+|.+.|++++|...++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666777777777777777776543 00 0122345555555555666666666665555
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 319 GRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 319 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
+.... +...|..+..+|...|++++|...|++.++.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54322 4455555555555566666666555555543
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=6.9e-06 Score=62.81 Aligned_cols=98 Identities=9% Similarity=-0.039 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCC-CCHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWV-PSVD 362 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~ 362 (409)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555554332 0000 1234455555566666666666666555432 100 1123
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 363 TISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
++..+...+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666666777777777777665543
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.23 E-value=1.4e-05 Score=61.09 Aligned_cols=97 Identities=5% Similarity=-0.063 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHH
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLM-PNRK 327 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~ 327 (409)
++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3344444444555555555555444321 0000 1234455555666666666666666655432 111 1123
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 328 IYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666666777777777777766543
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=3.9e-06 Score=77.06 Aligned_cols=119 Identities=9% Similarity=0.007 Sum_probs=71.2
Q ss_pred HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329 229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD 308 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (409)
..+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34556677777777777776653 334666677777777777777777777777665422 4566666677777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHhHHHHHHH
Q 015329 309 MAKKVYSAMLGRRLMPNRKIYQTMIHY--LCQEGDFNLAYIMCK 350 (409)
Q Consensus 309 ~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 350 (409)
+|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776654221 22333333333 666677777776666
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=1.8e-05 Score=57.56 Aligned_cols=95 Identities=8% Similarity=-0.098 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
+..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334445556666666666666666654322 45555556666666666666666666665543 2344555555566666
Q ss_pred cCCHhHHHHHHHHHHHc
Q 015329 269 KRRSWQANKLMGLMQRF 285 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~ 285 (409)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666655543
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=3.4e-06 Score=61.01 Aligned_cols=86 Identities=12% Similarity=-0.009 Sum_probs=50.0
Q ss_pred cCCHhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329 269 KRRSWQANKLMGLMQRFGI--EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 346 (409)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4666666777766665431 113445566666666667777777666666655332 4555666666666666666666
Q ss_pred HHHHHHHhC
Q 015329 347 IMCKDSMKK 355 (409)
Q Consensus 347 ~~~~~m~~~ 355 (409)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=2.7e-05 Score=71.17 Aligned_cols=123 Identities=11% Similarity=-0.043 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC---------------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 221 VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN---------------LATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
...|..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4456666777777777777777777776642 112 355666666666666666666666666655
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329 286 GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 286 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 346 (409)
... +...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.+++.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 322 4555666666666666666666666666654221 3344555555555555555544
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.16 E-value=8.1e-06 Score=71.38 Aligned_cols=156 Identities=8% Similarity=-0.075 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329 220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299 (409)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 299 (409)
....+..+...+.+.|++++|...|++.... .|+... +...++..++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3556777778888899999999999988775 343321 122333333332221 136777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCChH
Q 015329 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG-LKKNNQPC 378 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~ 378 (409)
+|.+.|++++|...++..++... .+...|..+..+|...|++++|...|++.++.. +-+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887643 267888899999999999999999999877653 2234445544444 33456678
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 015329 379 KANTIMALVQRRVPHFSS 396 (409)
Q Consensus 379 ~a~~~~~~~~~~~~~~~~ 396 (409)
.+.+.+..+.+..|..+.
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 888889888887776554
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.15 E-value=2.2e-05 Score=72.13 Aligned_cols=124 Identities=8% Similarity=-0.025 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
+..+...+.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334455678899999999999999986433 68899999999999999999999999999874 4577889999999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 015329 269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG--FCRSGHLDMAKKVYS 315 (409)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 315 (409)
.|++++|...|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999886432 33444445444 888899999999988
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=9e-05 Score=54.20 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=45.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 015329 298 IKGFCRSGHLDMAKKVYSAMLGRRLMPNR---KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS---VDTISALLEGL 371 (409)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~ 371 (409)
...+...|++++|...|+...+.... +. ..+..+..++...|++++|...|++..+.. +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 33444555555555555555443211 11 244445555555555555555555554432 112 34445555555
Q ss_pred HhCCChHHHHHHHHHHHhcCCC
Q 015329 372 KKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.+.|++++|.+.++++.+..|.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHcCCHHHHHHHHHHHHHHCCC
Confidence 5555555555555555555443
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=4.9e-06 Score=60.16 Aligned_cols=55 Identities=9% Similarity=-0.098 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHH
Q 015329 118 IMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFL 173 (409)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 173 (409)
+..+..+|...|++++|++.|++..+.. +-+..++..+..++...|++++|...+
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3334444444444444444444443332 222333333444444444444444433
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=5.4e-05 Score=66.96 Aligned_cols=91 Identities=10% Similarity=-0.106 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE 369 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 369 (409)
+...|..+..+|.+.|++++|.+.+++.++.... +...|..+..+|...|++++|.+.|++.++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456677777777788888888888777765322 56677777777778888888888887776653 335556666666
Q ss_pred HHHhCCChHHHHH
Q 015329 370 GLKKNNQPCKANT 382 (409)
Q Consensus 370 ~~~~~g~~~~a~~ 382 (409)
++.+.++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=7.2e-05 Score=68.31 Aligned_cols=131 Identities=7% Similarity=-0.055 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--------------VITYTTLISAFYKDNRPEIGNGLWNLMVCKG 251 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 251 (409)
...|..+...|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677888889999999999999998887432211 5788888999999999999999999998874
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 015329 252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK-VYSAML 318 (409)
Q Consensus 252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 318 (409)
+.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.++.+++.+ ++..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999999999876432 55677788888888888877653 455444
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=0.0004 Score=65.00 Aligned_cols=177 Identities=6% Similarity=-0.083 Sum_probs=131.4
Q ss_pred hcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 198 EMGI-LDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR----------PEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 198 ~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
+.|+ -++|++.++++...+.. +..+|+.--..+...|+ ++++++.++.+.+.. +-+..+|+.-.-.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 45678888888886544 56667766666666666 888888898888864 55777888877778
Q ss_pred HhcC--CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----
Q 015329 267 VNKR--RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSG-HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE---- 339 (409)
Q Consensus 267 ~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---- 339 (409)
.+.+ +++++++.++++.+...+ +...|+.-...+.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 8888 679999999999887654 7788887777777888 888999999988887655 778888777776653
Q ss_pred ----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 015329 340 ----------GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCK 379 (409)
Q Consensus 340 ----------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 379 (409)
+.++++++.+++.+... +-+...|..+-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888887764 5566777777666666666443
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.04 E-value=0.00011 Score=56.34 Aligned_cols=99 Identities=7% Similarity=-0.020 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKL--------GV---------KPDVITYTTLISAFYKDNRPEIGNGLWNLMV 248 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------g~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 248 (409)
...+......+.+.|++++|+..|.+.... .. ..+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445677777888888888888888877653 00 0012334444444444444444444444444
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 249 CKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 249 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
+.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 432 223344444444444444444444444444433
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=8.1e-05 Score=65.83 Aligned_cols=139 Identities=6% Similarity=-0.175 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
..+..+...+.+.|++++|++.|++..+.- ++. ...... ....+. .+.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHH-HHHHHHHHHHHHHHH
Confidence 346667777888888888888888776520 000 000000 000001 012345666666677
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329 267 VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 346 (409)
.+.|++++|+..+++..+.... +...+..+..+|...|++++|.+.|++..+.... +...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777665322 4566666777777777777777777776655322 4555666666666666666554
Q ss_pred H
Q 015329 347 I 347 (409)
Q Consensus 347 ~ 347 (409)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.98 E-value=7.5e-05 Score=56.34 Aligned_cols=100 Identities=9% Similarity=-0.075 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCC
Q 015329 295 NLVIKGFCRSGHLDMAKKVYSAMLGRRLMP------N-----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----NWV 358 (409)
Q Consensus 295 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~ 358 (409)
......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344444555666666666666655442110 1 226777777777788888887777777664 113
Q ss_pred C-CHHHH----HHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 359 P-SVDTI----SALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 359 ~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
| +...| .....++...|++++|+..|++..+..|..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4 44566 777888888888888888888887776554
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.0012 Score=61.90 Aligned_cols=158 Identities=11% Similarity=-0.064 Sum_probs=129.1
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 015329 236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR----------SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSG 305 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 305 (409)
..++|++.++.+...+ +-+...|+.--.++...|+ ++++++.++.+.+...+ +...|+.-.-.+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3467799999998874 4466777776666777776 89999999999988655 7888888888888889
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--------
Q 015329 306 --HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG-DFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN-------- 374 (409)
Q Consensus 306 --~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------- 374 (409)
+++++++.++++.+.... |...|+.-...+.+.| .++++++.++++++.. +-+...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999998666 8888988888888888 8999999999998876 56788888877776663
Q ss_pred ------CChHHHHHHHHHHHhcCCCCCch
Q 015329 375 ------NQPCKANTIMALVQRRVPHFSSN 397 (409)
Q Consensus 375 ------g~~~~a~~~~~~~~~~~~~~~~~ 397 (409)
+.++++.+.++++....|.....
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~sa 228 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSA 228 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence 55799999999999998877544
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=0.00023 Score=53.00 Aligned_cols=110 Identities=9% Similarity=-0.155 Sum_probs=50.9
Q ss_pred CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHH
Q 015329 271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAY 346 (409)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 346 (409)
++++|...|++..+.| .++.. |-..|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444445555444444 12222 3333444444444555555544442 34444444444444 44555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhcC
Q 015329 347 IMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANTIMALVQRRV 391 (409)
Q Consensus 347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 391 (409)
++|++..+.| +...+..|...|.. .++.++|.+.+++..+.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554443 34444444444544 455555555555554443
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=2.5e-05 Score=55.44 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
..+..+...+...|++++|.+.|++..+.... +...+..+..++...|++++|.+.+++.++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555443211 3444555555555555555555555555443
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=0.00041 Score=52.33 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-P-----DV-----ITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
..+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..++..++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555666777788888888888877764322 1 11 1444444444444555544444444443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00069 Score=50.33 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCC
Q 015329 304 SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 304 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 356 (409)
.+++++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 344444444444444432 33344444444444 444455555554444443
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=8.7e-05 Score=64.81 Aligned_cols=149 Identities=9% Similarity=-0.075 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
...+..+...+.+.|++++|...|++.... .|+...+ ...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------QLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------TCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------hhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 556778888899999999999999998874 3443321 1223333332221 12367778888
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHhH
Q 015329 266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL-CQEGDFNL 344 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~ 344 (409)
|.+.|++++|...+++..+... -+...|..+..+|...|++++|...|++..+.... +...+..+.... ...+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998887643 26778888888999999999999999988765322 334444444442 33456677
Q ss_pred HHHHHHHHHhC
Q 015329 345 AYIMCKDSMKK 355 (409)
Q Consensus 345 a~~~~~~m~~~ 355 (409)
+..+|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77788777654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=8.7e-05 Score=67.87 Aligned_cols=126 Identities=6% Similarity=-0.133 Sum_probs=85.6
Q ss_pred HHHhcCCHhHHHHHHHHHHHc-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHH
Q 015329 265 HLVNKRRSWQANKLMGLMQRF-----GI-EP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RL-MPN-RKIYQ 330 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~ 330 (409)
.+...|++++|..++++.++. |. .| ...+++.|..+|...|++++|..++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888777542 11 12 2456788888888888888888888776542 22 222 34577
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 331 TMIHYLCQEGDFNLAYIMCKDSMKK-----N--WVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
.|...|...|++++|..++++.++. | .+....+...+-.++...+.+++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888776542 3 1222344556667777888888888888887653
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.72 E-value=0.00014 Score=52.08 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
.+...|++..+... .+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667777766542 25667777777788888888888888877765322 46677777777888888888888877766
Q ss_pred hC
Q 015329 354 KK 355 (409)
Q Consensus 354 ~~ 355 (409)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00023 Score=65.05 Aligned_cols=124 Identities=9% Similarity=-0.068 Sum_probs=93.2
Q ss_pred HHHcCChhhHHHHHHHHHhcC---C---CC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-Cc-CHHHHHH
Q 015329 231 FYKDNRPEIGNGLWNLMVCKG---C---FP-NLATFNVRIQHLVNKRRSWQANKLMGLMQRF-----GI-EP-DEVTYNL 296 (409)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~~---~---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~p-~~~~~~~ 296 (409)
+...|++++|+.++++..+.. + .| ...+++.+..+|...|++++|..++++..+. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456899999999998876431 1 12 3578899999999999999999999887542 32 23 2457889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGR-----RLM-PN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
|...|...|++++|..++++..+. |.. |+ ..+.+.+-.++...+.+++|+.++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887542 332 22 33456667778888999999999988865
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=0.00023 Score=50.85 Aligned_cols=59 Identities=10% Similarity=-0.131 Sum_probs=23.9
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 015329 82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDM 141 (409)
Q Consensus 82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 141 (409)
.+..+...+...|++++|...++......+. ....+..+..+|...|++++|.+.|++.
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444444444444444333221 2233333444444444444444444443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=8e-05 Score=52.75 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=58.7
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 015329 255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-------RK 327 (409)
Q Consensus 255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~ 327 (409)
+...+..+...+...|++++|...|++..+.... +...+..+..+|.+.|++++|.+.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3455666667777777777777777777665422 56667777777777777888877777777652 33 34
Q ss_pred HHHHHHHHHHHcCCHhHHHHHH
Q 015329 328 IYQTMIHYLCQEGDFNLAYIMC 349 (409)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~ 349 (409)
.+..+..++...|+.++|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4455555555555555554433
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.00084 Score=45.24 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 353 (409)
.+...+...|++++|...+++..+.... +...+..+..++...|++++|...+++..
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344444444444444443332111 23333344444444444444444444433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.001 Score=44.75 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
...+..+...+...|++++|+..|++..+.... +...+..+...+.+.|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344555555566666666666666665554322 3445555555555555555555555555543
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.40 E-value=0.00054 Score=47.56 Aligned_cols=64 Identities=8% Similarity=0.010 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|.+.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566777777777778888888888777766433 455677777777777888888777776654
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.36 E-value=0.00043 Score=52.08 Aligned_cols=51 Identities=6% Similarity=-0.020 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHhcCCCC
Q 015329 343 NLAYIMCKDSMKKNWVPSVDTISALLEGLKKN-----------NQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 343 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 394 (409)
++|+..|++.++.+ +-+...|..+..+|... |++++|++.|+++.+.+|..
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 35555555555443 33444555555555544 35666666666666666554
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.35 E-value=0.0013 Score=45.57 Aligned_cols=64 Identities=17% Similarity=0.033 Sum_probs=36.0
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
+...+..+..+|...|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555666666666666666665554322 344555556666666666666666655543
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.32 E-value=0.001 Score=50.07 Aligned_cols=86 Identities=5% Similarity=-0.184 Sum_probs=46.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh----------hHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329 198 EMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE----------IGNGLWNLMVCKGCFPNLATFNVRIQHLV 267 (409)
Q Consensus 198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (409)
+.+.+++|.+.++...+.... +...|..+..++...++++ +|+..|++..+.. +-+...|..+-.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 344566777777776665433 5666666666666665543 5555555555442 223444555555554
Q ss_pred hcC-----------CHhHHHHHHHHHHHc
Q 015329 268 NKR-----------RSWQANKLMGLMQRF 285 (409)
Q Consensus 268 ~~~-----------~~~~a~~~~~~~~~~ 285 (409)
..| ++++|...|++..+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 442 455555555554444
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.20 E-value=0.0029 Score=43.42 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRK-IYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN 375 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 375 (409)
....+.+.|++++|...++...+.... +.. .+..+..+|...|++++|.+.|++.++.. +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 345667778888888888887765322 456 77777788888888888888888877653 222233311 4
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q 015329 376 QPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~ 394 (409)
.+.++...+++..+..|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4556666666555544443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.18 E-value=0.00078 Score=46.45 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 262 RIQHLVNKRRSWQANKLMGLMQRFGIEPDEV-TYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 262 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
....+.+.|++++|...+++..+.... +.. .+..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344566777777777777777665422 445 6667777777777777777777777665
No 211
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.07 E-value=0.044 Score=39.36 Aligned_cols=150 Identities=12% Similarity=0.036 Sum_probs=102.0
Q ss_pred hHHHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 116 GFIMRIMML--YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 116 ~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
.+...|+.+ ..-.|.+++..++..+... .-+..-||.++--....-+-+.+.++++.+-.-+++.
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis---------- 72 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD---------- 72 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------
Confidence 344455554 4457888888888888775 3456677777777777777777777776665444332
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW 273 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 273 (409)
..|++..+...+-.+- .+...++..++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..
T Consensus 73 ----~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 73 ----KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp ----GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred ----hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchh
Confidence 2345555555444432 25566677777888888888888888886543 4677777778888888888888
Q ss_pred HHHHHHHHHHHcCCC
Q 015329 274 QANKLMGLMQRFGIE 288 (409)
Q Consensus 274 ~a~~~~~~~~~~~~~ 288 (409)
++.+++.+.-+.|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 888888888887764
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.05 E-value=0.0085 Score=40.71 Aligned_cols=69 Identities=6% Similarity=-0.085 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 324 PNRKIYQTMIHYLCQEGD---FNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 324 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
.|...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++.+..|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 355566666666654433 567777777776654 455666666667777777777777777777777666
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.01 E-value=0.0065 Score=45.17 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHH
Q 015329 308 DMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG---DFNLAYIMCKDSMKKNWVP--SVDTISALLEGLKKNNQPCKANT 382 (409)
Q Consensus 308 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 382 (409)
..+.+.|.+..+.|. ++..+...+..++++++ +++++..++++..+.+ .| ....+..+..+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555544443 46666666666666666 4556777777666653 23 34555556666677777777777
Q ss_pred HHHHHHhcCCCC
Q 015329 383 IMALVQRRVPHF 394 (409)
Q Consensus 383 ~~~~~~~~~~~~ 394 (409)
.++.+.+..|.+
T Consensus 93 y~~~lL~ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCCCC
Confidence 777777776655
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.024 Score=49.07 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329 325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH 393 (409)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (409)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++.+.+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 44455554444444555555555555555543 45444544455555555555555555555555543
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.93 E-value=0.068 Score=52.41 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=82.1
Q ss_pred HHHhcCCCchhHHH-HHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329 88 SRLAGARRFDYIEH-LLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL 166 (409)
Q Consensus 88 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 166 (409)
......+++++|.+ ++..+. +......++..+.+.|..+.|+++.++-. .-+......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445677777766 442211 02233556667777777777776553211 113344567777
Q ss_pred HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 015329 167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNL 246 (409)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 246 (409)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.
T Consensus 669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 7777776433 1456777777777777777777777776642 22334444445555554444444
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329 247 MVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMG 280 (409)
Q Consensus 247 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 280 (409)
....|. ++....+|.+.|++++|.+++.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 333321 2223333444455555444443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.91 E-value=0.019 Score=56.46 Aligned_cols=154 Identities=8% Similarity=-0.041 Sum_probs=90.0
Q ss_pred HHHHccCCHHHHHH-HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329 158 KVLTESRDLKAIQA-FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR 236 (409)
Q Consensus 158 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 236 (409)
......++++.|.. ++..+ + +......++..+.+.|.++.|.++.+.- . .-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~----~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-E------GKDSLTKIARFLEGQEYYEEALNISPDQ--------D----QKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-C------CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H----HHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcC-C------chHHHHHHHHHHHhCCChHHheecCCCc--------c----hheehhhhcCC
Confidence 34445667776666 44221 1 0222366666777777777777654211 1 11233455677
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015329 237 PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSA 316 (409)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 316 (409)
+++|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 77777764332 3566777777777788888887777777642 23444555556777666666555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329 317 MLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD 351 (409)
Q Consensus 317 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 351 (409)
....|. ++....+|.+.|++++|.+++.+
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 554431 34445556667777777777655
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.88 E-value=0.024 Score=49.04 Aligned_cols=64 Identities=8% Similarity=-0.101 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455544444444455555555555555543 44444444445555555555555555555544
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.80 E-value=0.011 Score=53.00 Aligned_cols=91 Identities=11% Similarity=0.011 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----C-CCC-CHHH
Q 015329 298 IKGFCRSGHLDMAKKVYSAMLGRR---LMP----NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----N-WVP-SVDT 363 (409)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~-~~~~ 363 (409)
+..+.+.|++++|..++++..+.. +.| ...+++.+..+|...|++++|+.++++.++. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888888776541 111 2356777788888888888888887776542 2 122 2346
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 364 ISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 364 ~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
++.|...|...|++++|..+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777788888888888888877754
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.79 E-value=0.082 Score=37.99 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=93.6
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHH
Q 015329 55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHA 134 (409)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (409)
.-.|..++-.++........ +..-|+-+|-.....-+-+-..++++.+.+.-. ...+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD-------------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-------------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-------------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcC-------------cHhhhcHHHH
Confidence 34577777777777765543 333466666666666665666666665543311 1345566666
Q ss_pred HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 135 MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 135 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
...+-.+ ..+....+..++.....|.-+...+++.++.. +.+|++...-.+..+|.+.|+..++.+++.+..+
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 6665555 23455667778888888888888888877433 3466777788888889999999999999888888
Q ss_pred CCCC
Q 015329 215 LGVK 218 (409)
Q Consensus 215 ~g~~ 218 (409)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 8875
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.78 E-value=0.0076 Score=54.11 Aligned_cols=85 Identities=5% Similarity=-0.114 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----C-CCC-CHHHHHHHHH
Q 015329 304 SGHLDMAKKVYSAMLGR---RLMP----NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----N-WVP-SVDTISALLE 369 (409)
Q Consensus 304 ~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~-~~~~~~~l~~ 369 (409)
.|++++|..++++..+. -+.| ...+++.+..+|...|++++|..++++.++. | -.| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777765442 1111 2345677777777777777777777766542 2 122 2345777777
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 015329 370 GLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~ 388 (409)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7778888888877777654
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.64 E-value=0.0059 Score=54.85 Aligned_cols=87 Identities=7% Similarity=-0.101 Sum_probs=66.2
Q ss_pred hcCCHhHHHHHHHHHHHc-----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHH
Q 015329 268 NKRRSWQANKLMGLMQRF-----GI-EPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RL-MPN-RKIYQTMI 333 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~li 333 (409)
..|++++|..++++.++. |. .|+ ..+++.|..+|...|++++|..++++.++. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999887652 21 122 467889999999999999999999887643 32 233 34688999
Q ss_pred HHHHHcCCHhHHHHHHHHHHh
Q 015329 334 HYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~ 354 (409)
..|...|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.64 E-value=0.017 Score=40.21 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR------LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
+...+..|...+.+.|+++.|...|+...+.- -.+...++..+..++.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444455555556666666666665554320 112344555555555555555555555555554
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.61 E-value=0.013 Score=52.73 Aligned_cols=93 Identities=11% Similarity=0.000 Sum_probs=70.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HH
Q 015329 262 RIQHLVNKRRSWQANKLMGLMQRFG---IEP----DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RL-MPN-RK 327 (409)
Q Consensus 262 ll~~~~~~~~~~~a~~~~~~~~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~ 327 (409)
.+..+.+.|++++|..++++..+.. +.| ...+++.|..+|...|++++|+.++++.+.. |. .|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667889999999999887531 112 2457888999999999999999999887643 22 233 34
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329 328 IYQTMIHYLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 328 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 354 (409)
+++.|...|...|++++|..++++.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 688899999999999999999887764
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.14 Score=39.05 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHH
Q 015329 196 FCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA 275 (409)
Q Consensus 196 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 275 (409)
..+.|+++.|.++.+.+ -+...|..|.+.....|+++-|++.|..... +..+.-.|.-.|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665554 1455666666666666666666666655433 33444445555555555
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329 276 NKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYS 315 (409)
Q Consensus 276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 315 (409)
.++-+.....|- ++.....+...|+++++.++|.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 544444433331 2333444445566666666554
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.16 Score=38.72 Aligned_cols=130 Identities=9% Similarity=0.059 Sum_probs=95.4
Q ss_pred HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329 229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD 308 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 308 (409)
....+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456789999999997765 4788999999999999999999999988752 344555667788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 309 MAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 309 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
+..++-+.....|- ++.....+.-.|+++++.++|.+. |-.|... ......|-.+.|.++.+.+-
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 87777666655531 566677778899999999998652 2122211 11223678889999988764
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.18 E-value=0.055 Score=38.65 Aligned_cols=89 Identities=11% Similarity=0.001 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChH
Q 015329 304 SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL---AYIMCKDSMKKNWVP--SVDTISALLEGLKKNNQPC 378 (409)
Q Consensus 304 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~ 378 (409)
...+..+.+-|.+....|. ++..+--.+..+++++.+... ++.+++++.+.+ .| .......|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344555555665554443 567776677777777776555 777888777654 23 3445566667888888888
Q ss_pred HHHHHHHHHHhcCCCC
Q 015329 379 KANTIMALVQRRVPHF 394 (409)
Q Consensus 379 ~a~~~~~~~~~~~~~~ 394 (409)
+|.+.++.+.+..|.+
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8888888888888766
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.01 E-value=0.18 Score=33.97 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
.++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455555554444321 3444444444444555555555555554443
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.85 Score=41.07 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=27.5
Q ss_pred CCchhHHHHHHHhhh-----CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 015329 94 RRFDYIEHLLEHQKS-----LPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMH 142 (409)
Q Consensus 94 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 142 (409)
|+++.|.+.+-.+.+ .....+......++..|...|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 556666665544432 1122234555566777777777777666665543
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.93 E-value=0.099 Score=36.15 Aligned_cols=66 Identities=12% Similarity=-0.109 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG------VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK 250 (409)
Q Consensus 185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 250 (409)
+..-+..+...+.+.|+++.|..+|+...+.- .......+..+..++.+.|+++.|...++...+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455566666777777777777776665421 1123455556666666666666666666666553
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.67 E-value=0.05 Score=40.40 Aligned_cols=85 Identities=9% Similarity=-0.000 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCC---CchhHHHHHHHhhhCC-CCCChhHHHHHHHHHHhcCChHHHHH
Q 015329 61 EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGAR---RFDYIEHLLEHQKSLP-QGRREGFIMRIMMLYGKAGMIKHAMD 136 (409)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (409)
..+.+.|....+.+ .++..+.-.+..++++++ ++++++.+++.+.+.. +....+.+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34555566555555 367777777888888888 6779999999888764 21234555568888899999999999
Q ss_pred HHHHhhhcCCCCC
Q 015329 137 TFYDMHLYGCKRT 149 (409)
Q Consensus 137 ~~~~m~~~~~~~~ 149 (409)
.++.+++. .|+
T Consensus 93 y~~~lL~i--eP~ 103 (152)
T 1pc2_A 93 YVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHH--CTT
T ss_pred HHHHHHhc--CCC
Confidence 99999876 454
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.47 E-value=0.15 Score=42.41 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHh
Q 015329 273 WQANKLMGLMQRFGIEPD---EVTYNLVIKGFCR-----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE-GDFN 343 (409)
Q Consensus 273 ~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 343 (409)
..|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3455555555554 333 4456666666666 367777777777766653322355555666666663 6677
Q ss_pred HHHHHHHHHHhCCCC
Q 015329 344 LAYIMCKDSMKKNWV 358 (409)
Q Consensus 344 ~a~~~~~~m~~~~~~ 358 (409)
++.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777776665433
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.13 E-value=1.2 Score=37.07 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=74.5
Q ss_pred ccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH-HHHhc--CC------hhHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 015329 162 ESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK-AFCEM--GI------LDKAYLVMVEMQKLGVKPD---VITYTTLIS 229 (409)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~--g~------~~~a~~~~~~m~~~g~~~~---~~~~~~ll~ 229 (409)
+.++.......+.+.... .+....|..++. .+... |+ ...|..++++..+. .|+ ...|..+..
T Consensus 133 ~~~~~~~~~~~l~~~~~~---dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~ 207 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRV---DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTK 207 (301)
T ss_dssp TSSCHHHHHHHHTTCCGG---GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCcc---ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHH
Confidence 344445555555443222 223444555554 33332 32 34566666666664 344 456777777
Q ss_pred HHHHc-----CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCC--cCHHHHH
Q 015329 230 AFYKD-----NRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK-RRSWQANKLMGLMQRFGIE--PDEVTYN 295 (409)
Q Consensus 230 ~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--p~~~~~~ 295 (409)
.|.+. |+.++|.+.|++..+.+-.-+..++......++.. |+.+++.+.+++....... |+....+
T Consensus 208 lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 208 FYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 77774 77778888887777754222356666666767663 7777777777777776555 5544433
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.07 E-value=1.1e-05 Score=71.24 Aligned_cols=265 Identities=5% Similarity=0.042 Sum_probs=160.9
Q ss_pred CCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHH
Q 015329 43 DKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIM 122 (409)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (409)
.+..|..+-.+-.+.+...+|++.|-.. -|+..|..+|.+..+.|.+++-...+...++... ++.+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 4455655555555556666665544332 3555677788888888888888888777665522 334445678
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCCh
Q 015329 123 MLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL 202 (409)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 202 (409)
-+|++.++..+-.+++ -.|+..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++
T Consensus 124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L~~y 186 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSCSGG
T ss_pred HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHHHHH
Confidence 8888888765543332 146666666777778888888888777744421 22233445566666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 282 (409)
..|.+.-++ .-++.||..+-.+|...+.+..|...--.+.- .......++..|-..|.+++.+.+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 666543222 23677888888888888888776544333322 1122334566777888888888877776
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHhHHH
Q 015329 283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMP------NRKIYQTMIHYLCQEGDFNLAY 346 (409)
Q Consensus 283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~a~ 346 (409)
.... ....-+|+-|.-.|++- ++++..+-++....+ ++.- ....|.-++-.|.+-.++|.|.
T Consensus 256 lglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5322 34667777777777765 455555555443332 1111 3344667777777777777664
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.61 E-value=0.62 Score=31.45 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329 344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390 (409)
Q Consensus 344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (409)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555433
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.53 E-value=0.81 Score=33.67 Aligned_cols=53 Identities=8% Similarity=-0.006 Sum_probs=27.7
Q ss_pred CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015329 270 RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM 323 (409)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 323 (409)
+|.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++...+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554432222 444444444445566666666666666555544
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.34 E-value=0.69 Score=33.20 Aligned_cols=74 Identities=12% Similarity=-0.027 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 321 RLMPNRKIYQTMIHYLCQEGDF---NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 321 ~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
+-.|+..+--.+..+++++.+. .+++.+++++.+.+-.-....+..|.-++.+.|++++|.+..+.+.+..|.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3445666655666666666553 3567777777665411234556666677778888888888888877777765
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.28 E-value=1.1 Score=32.92 Aligned_cols=64 Identities=6% Similarity=0.111 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 305 GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG 370 (409)
Q Consensus 305 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 370 (409)
+++++|.++|+.+++.+-.. ...|....+--.+.|++..|.+++...+..+ +-+...+...+.-
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHh
Confidence 56667777777665543233 5556555665666777777777777766655 2233444444433
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.05 E-value=5 Score=39.50 Aligned_cols=256 Identities=9% Similarity=-0.059 Sum_probs=124.6
Q ss_pred HhcCCCchhHHHHHHHhhhCCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHhhhcCC-------CCCHHhHHHHHHHH
Q 015329 90 LAGARRFDYIEHLLEHQKSLPQGRREGFIM--RIMMLYGKAGMIKHAMDTFYDMHLYGC-------KRTVKSLNAALKVL 160 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~ll~~~ 160 (409)
.+..|+.+++..+++.....+...++.+-. .+.-+....|..+++.+++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 456677777777766554321111222211 233344555655567776666544210 01111122222223
Q ss_pred H--ccCCHHHHHHHHHhcCccCCCCcCHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHc
Q 015329 161 T--ESRDLKAIQAFLMEVPEKFHIQFDIFSFN--IVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISA--FYKD 234 (409)
Q Consensus 161 ~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~ 234 (409)
+ -.++.+....+. .+..... +...... .+...++..|+-+....++..+.+.. +..+...+..+ +...
T Consensus 464 a~~GS~~eev~e~L~-~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALK-EVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHH-HHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHH-HHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 2 233433333333 3333211 1111112 22333456677777777777666531 33333333333 3456
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHH--HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329 235 NRPEIGNGLWNLMVCKGCFPNLATFN--VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK 312 (409)
Q Consensus 235 ~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 312 (409)
|+.+.+..+++.+.... .|....-. ++..+|+..|+.....++++.+.+.. ..++...-.+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888877642 22222111 23446677888777777888777542 2233333333334445677666777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHh
Q 015329 313 VYSAMLGRRLMPNRKIYQTMIHYLCQEGDF-NLAYIMCKDSMK 354 (409)
Q Consensus 313 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 354 (409)
+++.+.+.+ .|...--..+.-+....|.. .++..++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 776555542 33333333344444444443 567777777654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.49 Score=45.42 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329 334 HYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALV 387 (409)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 387 (409)
+-|...|+++.|+++.++....- +-+..+|..|..+|++.|+++.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34556777777777777766543 445677777777777777777777777664
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.87 E-value=0.47 Score=33.87 Aligned_cols=84 Identities=10% Similarity=-0.023 Sum_probs=49.3
Q ss_pred CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHhH
Q 015329 270 RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDM---AKKVYSAMLGRRLMP--NRKIYQTMIHYLCQEGDFNL 344 (409)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~ 344 (409)
.....+.+-|.+....|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555555544443 455555556666666665544 777777766653 12 23334445566777777777
Q ss_pred HHHHHHHHHhC
Q 015329 345 AYIMCKDSMKK 355 (409)
Q Consensus 345 a~~~~~~m~~~ 355 (409)
|.+.++.+++.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777765
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.52 E-value=1.5 Score=31.85 Aligned_cols=72 Identities=13% Similarity=-0.012 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHcCCH---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 323 MPNRKIYQTMIHYLCQEGDF---NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 323 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
.|+..+--.+..+++++.+. .+++.+++++.+.+-.-.......|.-++.+.|++++|.+..+.+.+..|.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 46666666666777776653 4567777777664322234455556678888888888888888888887766
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.00 E-value=1.4 Score=31.50 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329 344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV 391 (409)
Q Consensus 344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (409)
+..+-++.+...++.|++....+.+.+|.+.+++..|.++|+-++.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 344444455555555666666666666666666666666665555443
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.74 E-value=9.8 Score=38.93 Aligned_cols=80 Identities=8% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329 224 YTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN----LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299 (409)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 299 (409)
|..++..+-+.+.++.+.+.-....+.....+ ...|..++.++...|++++|...+-.+.....+ ......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 44455555555555555555444433211111 113455555555556666555555554433222 233344444
Q ss_pred HHHhcC
Q 015329 300 GFCRSG 305 (409)
Q Consensus 300 ~~~~~g 305 (409)
..|..|
T Consensus 980 ~lce~~ 985 (1139)
T 4fhn_B 980 QLTKQG 985 (1139)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 444433
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.50 E-value=8.9 Score=37.84 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=149.3
Q ss_pred hhhcCChHHHHHHHHHhhcCCCCCCccch--HHHHHHHHhcCCCchhHHHHHHHhhhCCCC--C---ChhHHH--HHHHH
Q 015329 54 LKAERDPEKLFQLFKANAHNRIVIENKYA--FEDTVSRLAGARRFDYIEHLLEHQKSLPQG--R---REGFIM--RIMML 124 (409)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~--~l~~~ 124 (409)
+...++.+++++++......+ -..+..+ -..+.-.++..|..+++..++......... . ...+.. .+.-+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 445677788888888766422 0122222 223334456667666788877765543210 0 111111 22222
Q ss_pred HHhcCC-hHHHHHHHHHhhhcCCCCCHHhHH--HHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC
Q 015329 125 YGKAGM-IKHAMDTFYDMHLYGCKRTVKSLN--AALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI 201 (409)
Q Consensus 125 ~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 201 (409)
.+-.|. -+++.+.+..+.... ........ .+...++-.|+.+....++..+.+.. .-+..-...+.-++.-.|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCC
Confidence 322332 245666666665422 11111122 23334556788787787775543321 1122223333345557899
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329 202 LDKAYLVMVEMQKLGVKPDVITYT---TLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL 278 (409)
Q Consensus 202 ~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 278 (409)
.+.+..+++.+.... .| ..-|. ++.-+|+..|+.....+++..+.... ..++.....+--+....|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 999999988888641 22 22233 33446777888888888998888642 23343333333355557887778888
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329 279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHL-DMAKKVYSAMLGRRLMPNRKIYQTMIHYLC 337 (409)
Q Consensus 279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 337 (409)
++.+.+.+ .|....-..+..+....|.. .++.+++..+... +|..+-...+.++.
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALS 672 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence 87776654 55555555555555555554 5788888888754 45555544444444
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.23 E-value=2.6 Score=37.10 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG-----RRLMPNRKI 328 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 328 (409)
....++..+...|++.++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34445555556666666666665555443 22555666666666666666666666665433 255555443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.9 Score=43.62 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHhhhcCCCCCHHh--HHHHHHHHHccCCH-HHHHHHHHhcCcc-----CCCCc-C-
Q 015329 117 FIMRIMMLYGKAGM-IKHAMDTFYDMHLYGCKRTVKS--LNAALKVLTESRDL-KAIQAFLMEVPEK-----FHIQF-D- 185 (409)
Q Consensus 117 ~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~-~~a~~~~~~~~~~-----~~~~~-~- 185 (409)
....|+..+...++ ++.|..+|+++.+.+ |...+ ...++..+...++- -++.+++.+..+. ....+ +
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34456666666666 577889999887764 33322 22333333333321 2233332222111 00111 1
Q ss_pred ---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 015329 186 ---------IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLM 247 (409)
Q Consensus 186 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 247 (409)
....+.=.+.+...|+++.|+++-++....-. -+-.+|..|..+|...|+++.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234557778999999999999887533 26789999999999999999999998887
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.05 E-value=4.9 Score=33.90 Aligned_cols=188 Identities=12% Similarity=0.076 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHH--
Q 015329 60 PEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT-- 137 (409)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 137 (409)
.++.++-++.-.+.|.+-.-...|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHH
Confidence 44444445544444433333445666777777888888888776542 2233455666655553
Q ss_pred --HHHhhhcCCCCCHHhHHHHHHHHHccCCH--------HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 015329 138 --FYDMHLYGCKRTVKSLNAALKVLTESRDL--------KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYL 207 (409)
Q Consensus 138 --~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 207 (409)
.+.+.+.+++++......++..+...... ..+..+-..... ...-+...+..+...|.+.|++.+|..
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 44555667788877777777776553321 333333322211 011266778888888888888888887
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc---CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329 208 VMVEMQKLGVKPDVITYTTLISAFYKD---NRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 208 ~~~~m~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 283 (409)
.|-. |-.-|...+..++--+... |...++ +...-..++ -|.-.|+...|..+|+...
T Consensus 156 H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 156 YFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 6642 1111344454444433333 322221 222222233 3445677888877777654
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.90 E-value=0.98 Score=39.83 Aligned_cols=69 Identities=13% Similarity=-0.002 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH-----HcCCCcCHHHH
Q 015329 225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ-----RFGIEPDEVTY 294 (409)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~ 294 (409)
..++..+...|+++++...+..+.... +-+...|..+|.++.+.|+..+|++.|+... +.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445667778889999888888887663 5577888899999999999999998888874 35888877653
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.70 E-value=5.7 Score=33.85 Aligned_cols=167 Identities=14% Similarity=0.036 Sum_probs=97.5
Q ss_pred chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH----HHhhhcCCCCCHHhHHHH
Q 015329 81 YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF----YDMHLYGCKRTVKSLNAA 156 (409)
Q Consensus 81 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l 156 (409)
.+|.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++- +.+.+.++++|......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666777788888888888876542 22334556655555543 555667778888777777
Q ss_pred HHHHHccCCH--------HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329 157 LKVLTESRDL--------KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLI 228 (409)
Q Consensus 157 l~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 228 (409)
+..+...... ..+..+-.... ....-|......+...|.+.+++.+|...|- .|-.++...|..++
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g--~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL 174 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFG--DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARME 174 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHS--SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHH
Confidence 7777665542 23333322110 0112266777888889999999999888773 23343446665555
Q ss_pred HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329 229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 283 (409)
-.+...+... .++...-..++ -|.-.++...|..+++...
T Consensus 175 ~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 175 YEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 4444433321 22333333333 3445677888877666654
No 250
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.68 E-value=0.089 Score=47.08 Aligned_cols=226 Identities=10% Similarity=0.104 Sum_probs=153.4
Q ss_pred CCCcCCCCCCCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCC
Q 015329 33 NKFPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQG 112 (409)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (409)
..+..-+...++..+..++....+.|.++.-+..+...++.. -++..=+.|+-+|++.+++.+.++++. .
T Consensus 72 eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-------~ 141 (624)
T 3lvg_A 72 EAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-------G 141 (624)
T ss_dssp TTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS-------C
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc-------C
Confidence 444555566788889999999999999999999988887654 455666789999999999887555432 2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--------------------CCCCHHhHHHHHHHHHccCCHHHHHHH
Q 015329 113 RREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG--------------------CKRTVKSLNAALKVLTESRDLKAIQAF 172 (409)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 172 (409)
++..-...+..-|...|.++.|.-+|..+.... -.-++.||..+-.+|...+++..|...
T Consensus 142 ~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 142 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence 344344557778888888888887776653211 124677899999999999988555444
Q ss_pred HHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-C
Q 015329 173 LMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK-G 251 (409)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~ 251 (409)
--.+..... -...++..|-..|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +
T Consensus 222 GLniIvhad------eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriN 293 (624)
T 3lvg_A 222 GLHIVVHAD------ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVN 293 (624)
T ss_dssp HHHHHCCSS------CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSC
T ss_pred cchhcccHH------HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc
Confidence 322222211 12336677888999999999988877422 34778888888877764 566666555543322 1
Q ss_pred CC------CCHhhHHHHHHHHHhcCCHhHHH
Q 015329 252 CF------PNLATFNVRIQHLVNKRRSWQAN 276 (409)
Q Consensus 252 ~~------~~~~~~~~ll~~~~~~~~~~~a~ 276 (409)
++ -....|.-++-.|..-.+++.|.
T Consensus 294 ipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 294 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 11 13466777777777777777654
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.34 E-value=2 Score=29.08 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc
Q 015329 130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK 179 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 179 (409)
+.-+..+-++.+...++.|++.+..+.+++|-+.+++..|.++++.+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555555566666666666666666665555555444433
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.00 E-value=8.4 Score=34.55 Aligned_cols=262 Identities=10% Similarity=0.044 Sum_probs=151.3
Q ss_pred cCChHHHHHHHHHhhh-----cCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHH--HHHHHHHHHhcC
Q 015329 128 AGMIKHAMDTFYDMHL-----YGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFS--FNIVIKAFCEMG 200 (409)
Q Consensus 128 ~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g 200 (409)
.|+++.|++.+-.+.+ .+..-+......++..|...++++.....+.-+..+.|..+...+ .+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3678889888877653 234456777888999999999998887777666556565444332 233333333344
Q ss_pred ChhHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCCC---HhhHHHHHHHHH
Q 015329 201 ILDKAY--LVMVEMQK--LG-VKP---DVITYTTLISAFYKDNRPEIGNGLWNLMVCK--GCFPN---LATFNVRIQHLV 267 (409)
Q Consensus 201 ~~~~a~--~~~~~m~~--~g-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~ 267 (409)
..+... .+.+.+.. .| +.. .......|...+...|++.+|..++..+... |.... ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333221 12211111 11 111 1122356778888899999999999988643 22211 356667788888
Q ss_pred hcCCHhHHHHHHHHHHH----cCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHH----HHHH
Q 015329 268 NKRRSWQANKLMGLMQR----FGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTM----IHYL 336 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l----i~~~ 336 (409)
..+++.+|..++.++.. ....|+ ...+...+..+...+++.+|...|.+.... ...-|...+..+ +.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999888742 222232 235566777778889999988888777543 112233323222 2222
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHh
Q 015329 337 CQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN--NQPCKANTIMALVQR 389 (409)
Q Consensus 337 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~ 389 (409)
.-.+..+.-..+.........-++...|..++.+|... .+++.+.+.++....
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 22222222223333322222235677888888888764 345666555544433
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.97 E-value=6.1 Score=40.45 Aligned_cols=193 Identities=13% Similarity=0.080 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC----------------
Q 015329 83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC---------------- 146 (409)
Q Consensus 83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------------- 146 (409)
...++..+...+..+.+.++..-... ++..--.+..+|...|++++|.+.|.+... |+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 33455666666777666665544322 111112245667777777777777765421 11
Q ss_pred -------CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCC-CcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329 147 -------KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHI-QFD--IFSFNIVIKAFCEMGILDKAYLVMVEMQKLG 216 (409)
Q Consensus 147 -------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 216 (409)
..-..-|..++..+.+.+.++.+.++-+......+- .++ ...|..+.+.+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 001133677888888888887777665433222211 111 2257888889999999999999888887654
Q ss_pred CCCCHHHHHHHHHHHHHcCCh------------hhHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCCHhHH-HHHHHH
Q 015329 217 VKPDVITYTTLISAFYKDNRP------------EIGNGLWNLMVCKG--CFPNLATFNVRIQHLVNKRRSWQA-NKLMGL 281 (409)
Q Consensus 217 ~~~~~~~~~~ll~~~~~~~~~------------~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~ 281 (409)
.+ ......++..+|..|.. +++.+++....+.. ....+.-|..|=..+...|++.+| .-+|+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 43 45566666666655543 55556665443321 111122345555555667777655 445555
Q ss_pred HH
Q 015329 282 MQ 283 (409)
Q Consensus 282 ~~ 283 (409)
+.
T Consensus 1047 ~~ 1048 (1139)
T 4fhn_B 1047 LS 1048 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.78 E-value=2.8 Score=31.42 Aligned_cols=59 Identities=5% Similarity=-0.165 Sum_probs=31.1
Q ss_pred hHHHHhhhhcCChHHHHHHHHHhhcCCCCCCcc-------chHHHHHHHHhcCCCchhHHHHHHHh
Q 015329 48 PPALVKLKAERDPEKLFQLFKANAHNRIVIENK-------YAFEDTVSRLAGARRFDYIEHLLEHQ 106 (409)
Q Consensus 48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~ 106 (409)
...+..+...+.++.|.-+.+.+.......|+. .++..+.+++...|++.+|...|++.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345556666666666666555543221111221 13344556666666666666666664
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.38 E-value=3.6 Score=29.54 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc
Q 015329 130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK 179 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 179 (409)
+.-+..+-++.+...++.|++.+....+++|-+.+++..|.++++.+..+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444555555555555666666666666666666666666666444444
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.32 E-value=5.8 Score=32.47 Aligned_cols=118 Identities=7% Similarity=-0.027 Sum_probs=69.9
Q ss_pred HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCCHHhHHHHHHHHHccCC
Q 015329 88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC--KRTVKSLNAALKVLTESRD 165 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~ 165 (409)
..+.+.|+++++++....-.+..+. +...-..+++.++-.|++++|.+-++...+..- .|....|..+|++=...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R-- 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR-- 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--
Confidence 4567888999988888877666443 677777789999999999999998888876531 12223444444432110
Q ss_pred HHHHHHHHHh--cCccCCCCcCHHHHHHHHHHH--HhcCChhHHHHHHHHHHh
Q 015329 166 LKAIQAFLME--VPEKFHIQFDIFSFNIVIKAF--CEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 166 ~~~a~~~~~~--~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~ 214 (409)
.++|.- ...-.+ .| ..-...++.+. ...|+.++|.++-....+
T Consensus 82 ----~~vfaG~~~P~~~g-~~-~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 82 ----KDFAQGAATAKVLG-EN-EELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHTTSCCCEECCC-SC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHcCCCCCCCCC-CC-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 112210 001111 11 22334444443 345888888888777765
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.45 E-value=19 Score=33.82 Aligned_cols=311 Identities=9% Similarity=-0.030 Sum_probs=164.3
Q ss_pred hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCh
Q 015329 53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR-EGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 131 (409)
...+.++...+..+...+.... +.| -..|..+...+. ....+++...++.- +..|- ...-...+..+.+.+++
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~~p-L~~-yl~y~~l~~~l~-~~~~~ev~~Fl~~~---~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKDYP-LYP-YLEYRQITDDLM-NQPAVTVTNFVRAN---PTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTTST-THH-HHHHHHHHHTGG-GCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhhcCCC-cHH-HHHHHHHHhCcc-cCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHHhCCCH
Confidence 3556688888877766664332 222 223444433332 22444555544443 32222 33444567777888888
Q ss_pred HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH--HHHHH
Q 015329 132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK--AYLVM 209 (409)
Q Consensus 132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~--a~~~~ 209 (409)
...++++.. . +.+...-.....+....|+...+......+-...... ...+..++..+.+.|.+.. ...=+
T Consensus 89 ~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~--p~~c~~l~~~~~~~g~lt~~~~~~R~ 161 (618)
T 1qsa_A 89 RGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ--PNACDKLFSVWRASGKQDPLAYLERI 161 (618)
T ss_dssp HHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC--CTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 877775543 1 4455555667777888888765555444432332333 3467788888887776544 22323
Q ss_pred HHHHhCCCCCCHHHHHHHH-----------HHHHH-cCChhhHHHHHHHHHhcCCCCCHh---hHHHHHHHHHhcCCHhH
Q 015329 210 VEMQKLGVKPDVITYTTLI-----------SAFYK-DNRPEIGNGLWNLMVCKGCFPNLA---TFNVRIQHLVNKRRSWQ 274 (409)
Q Consensus 210 ~~m~~~g~~~~~~~~~~ll-----------~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~ 274 (409)
+.+...|- ...-..++ ..... ..++..+...... ..++.. .+...+.-+.+ .+.+.
T Consensus 162 ~~al~~~~---~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~ 232 (618)
T 1qsa_A 162 RLAMKAGN---TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QDAEN 232 (618)
T ss_dssp HHHHHTTC---HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred HHHHHCCC---HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHH
Confidence 33333321 11111111 11110 0112222211111 122222 12222333333 47889
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329 275 ANKLMGLMQRFGIEPDEVTYNLVIK----GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK 350 (409)
Q Consensus 275 a~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 350 (409)
|...+....+.+ ..+......+-. .....+...++...+...... ..+.....-.+....+.|+++.|...|.
T Consensus 233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~ 309 (618)
T 1qsa_A 233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLA 309 (618)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999998886543 223333332322 233344355666666665543 2344445555555667899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329 351 DSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 351 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
.|-.... ....-..-+.+++...|+.++|..+|..+.+
T Consensus 310 ~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 310 RLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8765422 2333344445788889999999999998865
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.69 E-value=8.4 Score=28.90 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=45.8
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhhhCC---CCC-C----hhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 015329 80 KYAFEDTVSRLAGARRFDYIEHLLEHQKSLP---QGR-R----EGFIMRIMMLYGKAGMIKHAMDTFYDMHL 143 (409)
Q Consensus 80 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 143 (409)
..++..-+..+...|.++.|+-+.+.+.... ... + ..++..+..++...|++.+|...|++.++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3456666888889999999998888755322 111 1 12455678889999999999999999643
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.89 E-value=14 Score=32.86 Aligned_cols=98 Identities=11% Similarity=-0.077 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCCCHhh--HH
Q 015329 188 SFNIVIKAFCEMGILDKAYLVMVEMQKLG--VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK---GCFPNLAT--FN 260 (409)
Q Consensus 188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~--~~ 260 (409)
++..+...|.+.|+++.|.+.|.++.... ..--...+-.++..+...+++..+...+.+.... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 46677888889999999999998888632 2333556677778888888998888888876532 22222211 00
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRF 285 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~ 285 (409)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111233468888888887776543
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.99 E-value=3 Score=34.14 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=39.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
...+.|++++++.....-++.... |...-..+++.+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445678888888877777766433 6777777888888888888888777765554
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.44 E-value=9.3 Score=27.41 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=33.9
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329 288 EPDEVTYNLVIKGFCRSGH---LDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK 355 (409)
Q Consensus 288 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 355 (409)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444444344444444433 3345556665555432112334444555566666666666666666554
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.49 E-value=11 Score=27.46 Aligned_cols=72 Identities=11% Similarity=-0.029 Sum_probs=52.0
Q ss_pred CCccchHHHHHHHHhcCCCc---hhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCH
Q 015329 77 IENKYAFEDTVSRLAGARRF---DYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV 150 (409)
Q Consensus 77 ~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 150 (409)
.|+..+--....+++++... .+++.+++.+.+.++.......-.|.-++.+.|++++|.+..+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 45666655566777777654 468888888877655445555556888899999999999999999875 4543
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.39 E-value=9.3 Score=29.69 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHhhhcCCCCC-HHhHHHHHHHHHccCCHHHHHHHH
Q 015329 130 MIKHAMDTFYDMHLYGCKRT-VKSLNAALKVLTESRDLKAIQAFL 173 (409)
Q Consensus 130 ~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 173 (409)
...++.++|..|...||-.. ..-|......+...|++..|..+|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555556665555554332 233455555555556666665555
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.29 E-value=26 Score=31.22 Aligned_cols=98 Identities=6% Similarity=-0.065 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH---cCCCcCHHHH--H
Q 015329 223 TYTTLISAFYKDNRPEIGNGLWNLMVCK--GCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR---FGIEPDEVTY--N 295 (409)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~--~ 295 (409)
+...+...|.+.|+++.|.+.+.++... +...-...+-.++..+...+++..+...+.++.. .+..|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888999999999999888764 2233456677778888888899888888888743 2222322211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329 296 LVIKGFCRSGHLDMAKKVYSAMLGR 320 (409)
Q Consensus 296 ~li~~~~~~g~~~~a~~~~~~m~~~ 320 (409)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112233467777777777665543
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.66 E-value=28 Score=29.65 Aligned_cols=167 Identities=11% Similarity=0.011 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH----HHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329 118 IMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL----KAIQAFLMEVPEKFHIQFDIFSFNIVI 193 (409)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~ll 193 (409)
|.++..-|.+++++++|++++..-.. .+.+.|+. |.+.-++ +...+.++++|......++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llv-evy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLV-DTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHH-HHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHH-HHHHHcCCCCCHHHHHHHH
Confidence 34566678899999999998755321 11122222 2222222 2223334455555544555
Q ss_pred HHHHhcCChh-HHHHHH----HHHHhCC--CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 194 KAFCEMGILD-KAYLVM----VEMQKLG--VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 194 ~~~~~~g~~~-~a~~~~----~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
..+.....-+ .=..+. .+-.+.| ..-|......+...|.+.+++.+|...|- .|..+....|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 4444333211 001112 2222222 33466777788899999999999887762 23344446675555555
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329 267 VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 319 (409)
...+...+ +|...-..++ -|...+++..|..+++...+
T Consensus 178 ~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 55443222 2333333333 35556788888877666543
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.74 E-value=8.9 Score=31.34 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=7.9
Q ss_pred HHHhcCCCchhHHHHHH
Q 015329 88 SRLAGARRFDYIEHLLE 104 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~ 104 (409)
...++.|+++.+..+++
T Consensus 10 ~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33344555554444444
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.69 E-value=19 Score=26.58 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=27.2
Q ss_pred hHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 015329 98 YIEHLLEHQKSLPQGRR-EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKR 148 (409)
Q Consensus 98 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 148 (409)
++.++|..|...+++.. ..+|......+-..|++++|.++|..-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35555555555544433 4445555555555566666666665555544444
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.30 E-value=39 Score=29.58 Aligned_cols=58 Identities=9% Similarity=-0.015 Sum_probs=31.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 015329 191 IVIKAFCEMGILDKAYLVMVEMQKLGVKPD-----VITYTTLISAFYKDNRPEIGNGLWNLMV 248 (409)
Q Consensus 191 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 248 (409)
-++..|...|++.+|.+++.++.+.--..| ..+|..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 355666666666666666666654211111 2234444455666666666666665554
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.17 E-value=31 Score=26.84 Aligned_cols=75 Identities=13% Similarity=0.001 Sum_probs=50.7
Q ss_pred CCCcCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC
Q 015329 181 HIQFDIFSFNIVIKAFCE--MGILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN 255 (409)
Q Consensus 181 ~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 255 (409)
...-|..-....+...-. .+...++.++|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 72 rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 345565554444442222 444678888888888766542 455677777778888888888888888888776663
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.56 E-value=29 Score=25.94 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=28.3
Q ss_pred hHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 015329 98 YIEHLLEHQKSLPQGRR-EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKR 148 (409)
Q Consensus 98 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 148 (409)
.+..+|..|...+++.. ..+|......+-..|++.+|.++|..-++.+-.|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 35555666655554433 4455555555556666666666666655555444
No 271
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.40 E-value=46 Score=27.33 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=7.3
Q ss_pred HHHhcCCCchhHHHHHH
Q 015329 88 SRLAGARRFDYIEHLLE 104 (409)
Q Consensus 88 ~~~~~~~~~~~a~~~~~ 104 (409)
...+..|+.+-+..+++
T Consensus 67 ~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 67 HQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHTTSSSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33344455444444443
No 272
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.77 E-value=33 Score=27.18 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=26.8
Q ss_pred hhHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 015329 97 DYIEHLLEHQKSLPQGRR-EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKR 148 (409)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 148 (409)
+.+..+|..|...+++.. ..+|......+-..|++++|.++|..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345555555555444433 3444455555555555555555555555444344
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.43 E-value=39 Score=26.09 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=7.6
Q ss_pred ccchHHHHHHHHhcCCC
Q 015329 79 NKYAFEDTVSRLAGARR 95 (409)
Q Consensus 79 ~~~~~~~li~~~~~~~~ 95 (409)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33334444444544444
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.24 E-value=25 Score=23.74 Aligned_cols=51 Identities=8% Similarity=-0.078 Sum_probs=23.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
.+.+.|++++|..+.+.+. .||...|..+-. .+.|.-+++...+.++-..|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555555555443222 455554443322 34555555555554444443
No 275
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=68.19 E-value=22 Score=27.14 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=8.2
Q ss_pred HHHccCCHHHHHHHH
Q 015329 159 VLTESRDLKAIQAFL 173 (409)
Q Consensus 159 ~~~~~~~~~~a~~~~ 173 (409)
..+..|+.+-+..++
T Consensus 78 ~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 78 YAGAQGRTEILAYML 92 (201)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334456666555555
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.94 E-value=63 Score=28.31 Aligned_cols=161 Identities=6% Similarity=-0.039 Sum_probs=94.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhcCCCCC-----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCcCHHHHHHH-
Q 015329 226 TLISAFYKDNRPEIGNGLWNLMVCKGCFPN-----LATFNVRIQHLVNKRRSWQANKLMGLMQRF--GIEPDEVTYNLV- 297 (409)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l- 297 (409)
-++..|...|++.+|.+++..+.+.=-..| ...|-.-+..|...++..++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578889999999999999998876411112 244566677888999999999999887542 232344333222
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHHhC-C-C-CC---CHHHHHHHHHHHHHcCCHhHHHHHHH-HHHhCCCCCCHHHHHH
Q 015329 298 ---IKGFC-RSGHLDMAKKVYSAMLGR-R-L-MP---NRKIYQTMIHYLCQEGDFNLAYIMCK-DSMKKNWVPSVDTISA 366 (409)
Q Consensus 298 ---i~~~~-~~g~~~~a~~~~~~m~~~-~-~-~p---~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~ 366 (409)
...+. ..+++..|...|-+..+. . . .| +...|..+.. . -.++..+...++. +....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-L-l~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-I-MLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-H-HTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-H-HcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 12345 689999998887765422 1 1 11 1122322222 2 2333333333222 1111112466666777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 015329 367 LLEGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 367 l~~~~~~~g~~~~a~~~~~~~~~ 389 (409)
++.+| ..+++.+..++++....
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~ 283 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK 283 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH
Confidence 77766 56788777777776543
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.56 E-value=26 Score=23.69 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN 356 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 356 (409)
.+.+.|++++|..+.+.+. .||...|..+-. .+.|.-+++...+.++-..|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3455566666655554322 455555544432 34555555555554444444
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.48 E-value=49 Score=30.14 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHh
Q 015329 115 EGFIMRIMMLYGKAGMIKHAMDTFYDM 141 (409)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m 141 (409)
..+++.+++.|...+.++.|..+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 344455555555555555555555554
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.47 E-value=40 Score=26.51 Aligned_cols=17 Identities=6% Similarity=0.005 Sum_probs=8.7
Q ss_pred HhcCCCchhHHHHHHHh
Q 015329 90 LAGARRFDYIEHLLEHQ 106 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~~ 106 (409)
.+..|+.+.+..+++.+
T Consensus 16 A~~~g~~~~v~~Ll~~~ 32 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLF 32 (241)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 34455555555555543
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.02 E-value=26 Score=23.61 Aligned_cols=86 Identities=8% Similarity=-0.091 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT 137 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (409)
...++|..+-+|+...+. ...+--.-+..+...|++++|..+.+... .|+..-|.+ -+-.+.|.-+.+...
T Consensus 20 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~A--Lce~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFA--LCEWHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHH--HHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHH--HHHHhcccHHHHHHH
Confidence 466667777777765551 11111122345566677777666554432 223333322 233456666666666
Q ss_pred HHHhhhcCCCCCHHhH
Q 015329 138 FYDMHLYGCKRTVKSL 153 (409)
Q Consensus 138 ~~~m~~~~~~~~~~~~ 153 (409)
+.++...| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666555 4443333
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.71 E-value=19 Score=28.30 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=8.4
Q ss_pred HHHHhcCCCchhHHHHHH
Q 015329 87 VSRLAGARRFDYIEHLLE 104 (409)
Q Consensus 87 i~~~~~~~~~~~a~~~~~ 104 (409)
+...+..|+.+-+..+++
T Consensus 46 L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334445555554444443
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.07 E-value=59 Score=27.36 Aligned_cols=80 Identities=6% Similarity=-0.107 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 015329 290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE---GDFNLAYIMCKDSMKKNWVPSVDTISA 366 (409)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ 366 (409)
|+.....+...|.+.|++.+|..-|-. |-.-+...+..++.-+... |...++--+ .-..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHHH
Confidence 566777778888888888887776531 1111344555554444333 333332111 1111
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 015329 367 LLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 367 l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
+--|.-.|+...|..+++...
T Consensus 195 -VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHhcCHHHHHHHHHHHH
Confidence 223445677777777777654
No 283
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.93 E-value=28 Score=23.52 Aligned_cols=79 Identities=5% Similarity=-0.179 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT 137 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (409)
...++|..+-+|+...+. ...+--.-+..+...|++++|..+.+... .|+..-|.+| +-.+.|.-+.+...
T Consensus 21 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHH
Confidence 456666666666665541 11111112344556666666666654443 2233333222 22355666666666
Q ss_pred HHHhhhcC
Q 015329 138 FYDMHLYG 145 (409)
Q Consensus 138 ~~~m~~~~ 145 (409)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 65555554
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.49 E-value=23 Score=25.19 Aligned_cols=64 Identities=9% Similarity=0.157 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hhhHHHHHHHHHhcCCC
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR--PEIGNGLWNLMVCKGCF 253 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~ 253 (409)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455666777777777777777776421111 12223333333333321 24455556666555543
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.41 E-value=55 Score=26.19 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRF--GIEP----DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 334 (409)
--++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3567788888888888888877542 2221 111112223322333333334444444422 445666667777
Q ss_pred HHHHcCCHhHHHHHHHHHHh
Q 015329 335 YLCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 335 ~~~~~g~~~~a~~~~~~m~~ 354 (409)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 78888888888888766543
No 286
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=62.15 E-value=85 Score=28.11 Aligned_cols=112 Identities=11% Similarity=0.095 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 015329 58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT 137 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (409)
.+++.|+.+-.+.. .+.-...|..-++.+...|++++|.++-....+. .-.+..+.+.+-..=...|+..--+.+
T Consensus 343 ~n~~lA~~lA~R~~----LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRMAVRNN----LAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHHHHHTT----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHHhcC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 67777766665543 3444455776777888888888888877665433 233566655554444445666667777
Q ss_pred HHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHh
Q 015329 138 FYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLME 175 (409)
Q Consensus 138 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 175 (409)
|..+.+.| +.+..---.+.+.....|+.+..++++.+
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 77777766 45554444566666667777777777643
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.89 E-value=3.9 Score=33.30 Aligned_cols=194 Identities=10% Similarity=-0.033 Sum_probs=90.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH--HcCChhhHHHHHHHHHhcC---------CC-
Q 015329 193 IKAFCEMGILDKAYLVMVEMQKLGVKPDVI-------TYTTLISAFY--KDNRPEIGNGLWNLMVCKG---------CF- 253 (409)
Q Consensus 193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~~- 253 (409)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344566788888878888777666555533 2344444432 4567666666665543311 10
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 015329 254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVT----------------YNLVIKGFCRSGHLDMAKKVYSAM 317 (409)
Q Consensus 254 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----------------~~~li~~~~~~g~~~~a~~~~~~m 317 (409)
.|..-++ .+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+..+++..
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYV----ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccCCCC-HHHHHHHcCCHHHH----HHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 0112222 33344556776543 44444555544322 112333445567765544444310
Q ss_pred HhCCCCCC---HHHHHHHHHHHHHcCC----HhHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhCCChHHH
Q 015329 318 LGRRLMPN---RKIYQTMIHYLCQEGD----FNLAYIMCKDSMKKNWV----------PSVDTISALLEGLKKNNQPCKA 380 (409)
Q Consensus 318 ~~~~~~p~---~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a 380 (409)
..|..++ ..-.+.|..++..... .+...++++.+++.|.. .|..-.+. +...++.|+.+-+
T Consensus 164 -~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g~~~~v 241 (260)
T 3jxi_A 164 -HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP-LMMAAKTGKIGIF 241 (260)
T ss_dssp -SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH-HHHHHHTTCHHHH
T ss_pred -ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH-HHHHHHcCCHHHH
Confidence 0333332 2223344444332221 11123444444443321 22222233 3344567888888
Q ss_pred HHHHHHHHhcCCC
Q 015329 381 NTIMALVQRRVPH 393 (409)
Q Consensus 381 ~~~~~~~~~~~~~ 393 (409)
..++++-....++
T Consensus 242 ~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 242 QHIIRREIADAAA 254 (260)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHhCCCcccc
Confidence 8777766544433
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.89 E-value=60 Score=25.67 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=47.5
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC
Q 015329 179 KFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP 254 (409)
Q Consensus 179 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 254 (409)
...+.-|..-....+. |+.. .+.+.++|..|...|+-. -...|......+...|++.+|..||+.-++.+-.|
T Consensus 110 ~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 110 NPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344556555444443 2222 256778888888776543 35567777777778888888888888888776666
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.19 E-value=87 Score=26.97 Aligned_cols=66 Identities=8% Similarity=0.168 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 015329 258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGH--LDMAKKVYSAMLGRRLMP 324 (409)
Q Consensus 258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 324 (409)
....++.-|...|+.++|...++++..-... .......+..+.-+.++ .+...+++..+.+.|+-+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3566777888888888888888887532211 23344455555554333 345667777777766554
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.11 E-value=20 Score=26.47 Aligned_cols=64 Identities=9% Similarity=0.157 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hhhHHHHHHHHHhcCCC
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR--PEIGNGLWNLMVCKGCF 253 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~ 253 (409)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455667777777777777777776421110 12223333333333222 23455555555555433
No 291
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=56.99 E-value=22 Score=24.87 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=47.2
Q ss_pred CCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHH
Q 015329 43 DKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHL 102 (409)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 102 (409)
...++...+...+..++.+-|.+++++..+.| +...|.+.+-.|...=+.+-++++
T Consensus 31 kDkLykDAietAa~S~d~elaEeLL~yFVe~g----~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 31 KDSLYKDAMQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC----SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHHhccChHHHHHH
Confidence 45688899999999999999999999998877 667788888888888888877665
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.94 E-value=59 Score=24.30 Aligned_cols=74 Identities=8% Similarity=-0.017 Sum_probs=48.2
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH
Q 015329 180 FHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL 256 (409)
Q Consensus 180 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 256 (409)
.....|..-....|..--.. +...++|..|...|+-. -...|......+-..|++.+|.+||+.-++.+-.|-.
T Consensus 57 ~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 57 KRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34455666555555332222 44667888888776543 3455667777777788888888888888887766644
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.70 E-value=47 Score=26.04 Aligned_cols=53 Identities=6% Similarity=-0.005 Sum_probs=30.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHh--HHHHHHHHHccCCHHHHHHHH
Q 015329 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKS--LNAALKVLTESRDLKAIQAFL 173 (409)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~ 173 (409)
.+...+..|+.+.+..+++.+.+.|..++... -...+...+..|+.+-+..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 66 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH
Confidence 34445677888877777776666554443221 123344455667776666666
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.07 E-value=58 Score=23.97 Aligned_cols=70 Identities=7% Similarity=-0.045 Sum_probs=42.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC
Q 015329 182 IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP 254 (409)
Q Consensus 182 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 254 (409)
...|..-....+...-. .+++.++|..|...|+-. -...|......+...|++.+|.+||+.-++.+-.|
T Consensus 64 YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp GTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455544444432222 234677777777766532 34556666666777777777777777777766555
No 295
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.89 E-value=61 Score=24.10 Aligned_cols=60 Identities=8% Similarity=-0.091 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhCCCCC--ChhHHHHHHH-H-----HHhcCChHHHHHHHHHhhh
Q 015329 83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGR--REGFIMRIMM-L-----YGKAGMIKHAMDTFYDMHL 143 (409)
Q Consensus 83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~m~~ 143 (409)
|...+..+ ..|++-+|.++|+..-+....+ ...+|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 4489999999999887665555 5667777777 2 4568889889888888754
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.41 E-value=82 Score=25.20 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=51.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh--CCCCC----CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329 192 VIKAFCEMGILDKAYLVMVEMQK--LGVKP----DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~~m~~--~g~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (409)
-++.+....++++|.+++++..+ .+.+. +.......+..-.....-.-+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 35667778888888888877654 12221 111222233333333333444444555533 4456666777788
Q ss_pred HHhcCCHhHHHHHHHHHH
Q 015329 266 LVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~ 283 (409)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 888999999888886653
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.09 E-value=30 Score=27.15 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=9.1
Q ss_pred HhcCCCchhHHHHHHH
Q 015329 90 LAGARRFDYIEHLLEH 105 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~ 105 (409)
.++.|+++.+..+++.
T Consensus 16 A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 16 ATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHc
Confidence 3456666665555553
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.06 E-value=53 Score=26.93 Aligned_cols=15 Identities=7% Similarity=-0.112 Sum_probs=6.1
Q ss_pred HHHhcCCHhHHHHHH
Q 015329 265 HLVNKRRSWQANKLM 279 (409)
Q Consensus 265 ~~~~~~~~~~a~~~~ 279 (409)
..+..|+.+-+.-++
T Consensus 167 ~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 167 ITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 333444444333333
No 299
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=53.92 E-value=16 Score=21.84 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=20.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC
Q 015329 111 QGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT 149 (409)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 149 (409)
+..+..+...++.+ ..|+++.|+..+-.|...+..|+
T Consensus 21 P~ld~~~I~~vL~a--~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 21 PNMDQEVIRSVLEA--QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp SSSCHHHHHHHHTT--TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCCHHHHHHHHHH--cCCCHHHHHHHHHcCcCCCCCCC
Confidence 33445444444433 36677777777777765555554
No 300
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=53.39 E-value=11 Score=22.53 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=20.7
Q ss_pred cCChHHHHHHHHHhhcCCCCCCccc
Q 015329 57 ERDPEKLFQLFKANAHNRIVIENKY 81 (409)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (409)
.=|++.|+..|..+...+.++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 3589999999999988887877654
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.19 E-value=28 Score=29.75 Aligned_cols=96 Identities=9% Similarity=-0.049 Sum_probs=50.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHH---HHHH
Q 015329 152 SLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMG-ILDKAYLVMVEMQKLGVKPDVIT---YTTL 227 (409)
Q Consensus 152 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~---~~~l 227 (409)
....++.-|...|+.++|...++++... ... .......+..++-+.. ..+.+..++..+.+.|+-..... |..+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~ 90 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASP-SLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEI 90 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCG-GGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3567888899999999999999777321 111 1122222222222211 24556677777877665433322 2222
Q ss_pred HHHHHHc-CChhhHHHHHHHHHh
Q 015329 228 ISAFYKD-NRPEIGNGLWNLMVC 249 (409)
Q Consensus 228 l~~~~~~-~~~~~a~~~~~~m~~ 249 (409)
+..+-.. =|...|...+..+..
T Consensus 91 ~~~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 91 LELAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHG
T ss_pred HhhChHhhcCccchHHHHHHHHH
Confidence 2222222 245556666555543
No 302
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=52.41 E-value=49 Score=22.07 Aligned_cols=32 Identities=6% Similarity=0.143 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC
Q 015329 133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESR 164 (409)
Q Consensus 133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 164 (409)
.|.++.+++...|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34555555555666666666666655555444
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.99 E-value=1.3e+02 Score=26.82 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=17.9
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329 183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214 (409)
Q Consensus 183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 214 (409)
..+......++.. ..|+...+..+++.+..
T Consensus 191 ~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 191 VLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp ECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 3445555555544 45777777777776654
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.78 E-value=1.1e+02 Score=25.74 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN 268 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (409)
...++.-|...|+.++|...++++......|..+....-...=.+...-+.+-.++..+. .++-+.......+...+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHh
Q ss_pred cCC--------HhHHHHHHHHHHHcCCCcCHHHH----------------------------------------------
Q 015329 269 KRR--------SWQANKLMGLMQRFGIEPDEVTY---------------------------------------------- 294 (409)
Q Consensus 269 ~~~--------~~~a~~~~~~~~~~~~~p~~~~~---------------------------------------------- 294 (409)
..+ ++..-.++..+...|+-|-....
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--hHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 295 -----NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF--NLAYIMCKDSMKKNWVPSVDTISAL 367 (409)
Q Consensus 295 -----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~l 367 (409)
+.++.=|...|+.++|.+.++++..-... ...+...+..++-+.++- +....++..+.+.|+-+.......+
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHH
Q 015329 368 LEGL 371 (409)
Q Consensus 368 ~~~~ 371 (409)
.+.+
T Consensus 244 ~~vl 247 (307)
T 2zu6_B 244 ERIY 247 (307)
T ss_dssp HHHH
T ss_pred HHHH
No 305
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=51.68 E-value=72 Score=24.77 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=7.6
Q ss_pred HhcCCCchhHHHHHHH
Q 015329 90 LAGARRFDYIEHLLEH 105 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~ 105 (409)
.+..|+++....+++.
T Consensus 13 A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 13 LAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555544443
No 306
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=51.65 E-value=1.1e+02 Score=25.99 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhCC
Q 015329 361 VDTISALLEGLKKNN 375 (409)
Q Consensus 361 ~~~~~~l~~~~~~~g 375 (409)
...|..++..|+..+
T Consensus 272 l~~~~pll~~~~~~~ 286 (339)
T 1ug3_A 272 LKARAKLLQKYLCDE 286 (339)
T ss_dssp HHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHcCCc
Confidence 445788888888543
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.31 E-value=30 Score=25.83 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhc--CCCCCHHhHHHHHHHHHccCC
Q 015329 121 IMMLYGKAGMIKHAMDTFYDMHLY--GCKRTVKSLNAALKVLTESRD 165 (409)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~ 165 (409)
++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444444555555555444 333344444444444444443
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.29 E-value=1.2e+02 Score=30.32 Aligned_cols=109 Identities=15% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC------------------
Q 015329 86 TVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCK------------------ 147 (409)
Q Consensus 86 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~------------------ 147 (409)
++..|...|.++-+.++..-+... ....| .+..+|...|++++|.+.|.+.. .|+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t----~~~~y-v~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSD----PIAVY-LKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSS----HHHHH-HHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCC----hHHHH-HHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 555666666666555444333211 11222 25566777777777777776542 1111
Q ss_pred --C---CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCC-Cc--CHHHHHHHHHHHHhcC
Q 015329 148 --R---TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHI-QF--DIFSFNIVIKAFCEMG 200 (409)
Q Consensus 148 --~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~g 200 (409)
+ ...-|..++..+-+.+.++.+.++-+-....... .+ ....|+.+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 1124788899999999887777765433222110 11 1345777777777655
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.70 E-value=75 Score=23.35 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH
Q 015329 261 VRIQHLVNKRRSWQANKLMGLM 282 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~ 282 (409)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444445555555555444
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.72 E-value=72 Score=22.60 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHH
Q 015329 260 NVRIQHLVNKRRSWQANKLMGLMQ 283 (409)
Q Consensus 260 ~~ll~~~~~~~~~~~a~~~~~~~~ 283 (409)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555555555555555553
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.45 E-value=18 Score=27.70 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=7.4
Q ss_pred HHccCCHHHHHHHH
Q 015329 160 LTESRDLKAIQAFL 173 (409)
Q Consensus 160 ~~~~~~~~~a~~~~ 173 (409)
.+..|+.+.+..++
T Consensus 12 A~~~g~~~~v~~ll 25 (201)
T 3hra_A 12 AANQRDTKKVKEIL 25 (201)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 34455555555555
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.14 E-value=18 Score=29.14 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=29.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccc-------hHHHHHHHHh--cCCCchhHHHHHHHh
Q 015329 49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKY-------AFEDTVSRLA--GARRFDYIEHLLEHQ 106 (409)
Q Consensus 49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~~ 106 (409)
..+....+.|+.+....+++.+.+.+ ...+.. -.+.|..+.. +.|+.+-+..+++..
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34555666777777666666554433 222211 2233333322 556666666666653
No 313
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.80 E-value=53 Score=24.93 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=14.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVKPD 220 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~ 220 (409)
...+..|+.+.-.++.+.+.+.|..++
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 334445555544555555666655444
No 314
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.29 E-value=45 Score=25.30 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=30.7
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhcCCCCCHh---hHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCcC
Q 015329 227 LISAFYKDNRPEIGNGLWNLMVCKGCFPNLA---TFNVRIQHLVN-KRRSWQANKLMGLMQRFGIEPD 290 (409)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~ 290 (409)
.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3344445555555566666677776555432 12222222211 2233334555566666665543
No 315
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.29 E-value=1.2e+02 Score=24.32 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=50.0
Q ss_pred HHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCC
Q 015329 51 LVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGM 130 (409)
Q Consensus 51 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (409)
+....+.|+.+.+..+++.-..-+ ...+..-+ +.+...+..|+.+-+..+++.-..... .+..-. +.+...+..|+
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~-t~L~~A~~~~~ 84 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGW-TPLHNAVQMSREDIVELLLRHGADPVL-RKKNGA-TPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTCC-CHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCC-CHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCC-CHHHHHHHcCC
Confidence 445556677765555554432211 11111112 344555667776655555543211111 111111 22333345565
Q ss_pred hHHHHHHHHHhhhcCCCCCHHh--HHHHHHHHHccCCHHHHHHHHH
Q 015329 131 IKHAMDTFYDMHLYGCKRTVKS--LNAALKVLTESRDLKAIQAFLM 174 (409)
Q Consensus 131 ~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~ 174 (409)
.+ +++.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 85 ~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 85 VK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126 (285)
T ss_dssp HH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred HH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH
Confidence 44 3344444454433211 1123344455666666666653
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.60 E-value=89 Score=22.61 Aligned_cols=34 Identities=9% Similarity=-0.021 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 237 PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4445555555544443334444333344444433
No 317
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=43.28 E-value=62 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=11.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 015329 301 FCRSGHLDMAKKVYSAMLGRR 321 (409)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~~~ 321 (409)
.+..|+.+.+..+++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 344555555555555555544
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.73 E-value=87 Score=22.65 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=29.0
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 281 LMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 281 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34445555544322 2333333334 445666666665555445555544445555555543
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.61 E-value=93 Score=22.46 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=26.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 212 MQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 212 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344555433222 2333444444445555555555555443344444444444444444
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=42.54 E-value=96 Score=22.58 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 212 MQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 212 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
+.+.|++++ .--..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555533 2223344445455555566666666655544444555444455555544
No 321
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=42.52 E-value=2.7e+02 Score=27.67 Aligned_cols=158 Identities=9% Similarity=0.071 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCC---hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 015329 189 FNIVIKAFCEMGI---LDKAYLVMVEMQKLG----VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNV 261 (409)
Q Consensus 189 ~~~ll~~~~~~g~---~~~a~~~~~~m~~~g----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 261 (409)
-..++...|..|+ .+.|.+.|+.....+ +.||.. ..+...-.+.|..++-..+++...... +..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHH
Confidence 3456677777776 446777787776532 344432 233333445677776667777776643 3444566
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 015329 262 RIQHLVNKRRSWQANKLMGLMQRFG-IEPDEVTYNLVIKGFCRS-GHLDMAKKVYSAMLGR---RLMPNRKIYQTMIHYL 336 (409)
Q Consensus 262 ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~ 336 (409)
++.+++...+.....++++...... +++.. .. .++.+.... ...+.|++.+.+=.+. ....+...+..+|...
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQD-AT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7778777788877777777665432 33322 22 233333322 2234555555442111 1222333456667666
Q ss_pred HHcCCHhHHHHHHHHHH
Q 015329 337 CQEGDFNLAYIMCKDSM 353 (409)
Q Consensus 337 ~~~g~~~~a~~~~~~m~ 353 (409)
...-.-++-.+-+++..
T Consensus 842 ~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HTTCCSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 55433333333334433
No 322
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=41.85 E-value=85 Score=21.77 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329 272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEGDFNLAYIMCK 350 (409)
Q Consensus 272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 350 (409)
+.+|+.-+++.... .+|......++..+-.. ++.++++.....+. |+ .+.++...+....+.|-.+.. +.|.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 34444444444333 23444555555544332 44555555544432 44 234455555555555555443 3444
Q ss_pred HHH
Q 015329 351 DSM 353 (409)
Q Consensus 351 ~m~ 353 (409)
.|.
T Consensus 77 ~m~ 79 (119)
T 1wty_A 77 EML 79 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.52 E-value=97 Score=22.36 Aligned_cols=45 Identities=18% Similarity=0.064 Sum_probs=22.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC
Q 015329 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD 165 (409)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 165 (409)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 444444445555566666666555444444444444555554443
No 324
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.43 E-value=1.4e+02 Score=24.93 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=25.5
Q ss_pred HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329 232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE 291 (409)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 291 (409)
++.|+.+ +.+.+.+.|..++..+ .+...++.|+.+ +++.+.+.|-.||.
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 3455543 4445566676666554 333445566653 45556666766654
No 325
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=40.67 E-value=36 Score=26.22 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhhCCCCCChhHHH----HHHHHHHhcCChHHHHHHHHHhhh
Q 015329 97 DYIEHLLEHQKSLPQGRREGFIM----RIMMLYGKAGMIKHAMDTFYDMHL 143 (409)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~ 143 (409)
+.|+.+|+.+.+.........-. ..+..|.+.|.+++|.++|++...
T Consensus 95 ESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 95 ESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 46888888887654322222211 244568899999999999999644
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.58 E-value=97 Score=22.05 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=14.8
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544433333333333334443333
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.87 E-value=1e+02 Score=21.89 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329 307 LDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD 341 (409)
Q Consensus 307 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 341 (409)
.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 33444444444444333344443344444444443
No 328
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=38.80 E-value=52 Score=20.08 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329 329 YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK 373 (409)
Q Consensus 329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 373 (409)
++.++..++...-.+.++-.++++++.| ..+..+|-.-++.+.+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3444455544444555555555555555 4444444444444433
No 329
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.68 E-value=1.2e+02 Score=22.55 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=40.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHHcCCHhHHHHHHHHHHh
Q 015329 301 FCRSGHLDMAKKVYSAMLGRRLMP--NRKIYQTMIH-Y-----LCQEGDFNLAYIMCKDSMK 354 (409)
Q Consensus 301 ~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 354 (409)
+.+.|++-+|-++|+..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345599999999999998775555 5567777777 2 2357999999999988765
No 330
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=38.54 E-value=1.3e+02 Score=22.77 Aligned_cols=50 Identities=8% Similarity=0.093 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 015329 238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE 288 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (409)
+.+..++..+.+.|..-|...-...+....+.|.+ ....+-.++.+.|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 34556666777777666665556666666554433 235566667777775
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.79 E-value=1.1e+02 Score=22.29 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=15.5
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544443334444444444444443
No 332
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=37.55 E-value=1.3e+02 Score=23.04 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=8.1
Q ss_pred HhcCCCchhHHHHHHH
Q 015329 90 LAGARRFDYIEHLLEH 105 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~ 105 (409)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 9 ACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhc
Confidence 3445555555555544
No 333
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.33 E-value=1.2e+02 Score=22.30 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329 238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP 289 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 289 (409)
+.+..+++.+.+.|..-|...-...+....+.| .....+-.++...|+..
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 445566666666666555555555555555433 23445666666666653
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.17 E-value=64 Score=23.98 Aligned_cols=71 Identities=18% Similarity=0.065 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhC--CCCCChhHHHHHHHHHHhcCCh
Q 015329 60 PEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL--PQGRREGFIMRIMMLYGKAGMI 131 (409)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 131 (409)
.+.+++-++...+..+.+.+.. -..++..+...++.-.|.++++.+.+. ++..+..+.-.-+..+.+.|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445555555444433555442 233555565655666677777666654 4444444433344444444443
No 335
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.72 E-value=1.5e+02 Score=23.01 Aligned_cols=36 Identities=6% Similarity=-0.119 Sum_probs=19.6
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329 234 DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR 270 (409)
Q Consensus 234 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 270 (409)
-.+++.|+-.+.+|.+.| .|....-..++.+.-.-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 456666666666666666 554444444444444433
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.64 E-value=1.2e+02 Score=22.03 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=26.4
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 282 MQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 282 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344555433322 233344444444445555555555544444444444444444444443
No 337
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.22 E-value=96 Score=20.73 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329 310 AKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG 340 (409)
Q Consensus 310 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 340 (409)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555566666666666666665544
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.40 E-value=73 Score=22.52 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=15.0
Q ss_pred cCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC
Q 015329 128 AGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR 164 (409)
Q Consensus 128 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 164 (409)
.+..-.|.++++.+.+.+...+..|.-..++.+.+.|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444444444444333333333333344444433
No 339
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.37 E-value=76 Score=22.78 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=17.5
Q ss_pred HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329 87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG 129 (409)
Q Consensus 87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (409)
+..+...++.-.|.++++.+.+.++..+..+.-..+..+.+.|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444344445555555444433333333333333333333
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.00 E-value=1.6e+02 Score=22.68 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=11.3
Q ss_pred HHHcCChhhHHHHHHHHHhcCC
Q 015329 231 FYKDNRPEIGNGLWNLMVCKGC 252 (409)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~~~ 252 (409)
.+..|+.+-+..+++.+.+.|.
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhcCC
Confidence 3445555555555555555543
No 341
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.44 E-value=1.7e+02 Score=22.66 Aligned_cols=32 Identities=16% Similarity=-0.015 Sum_probs=15.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329 304 SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHY 335 (409)
Q Consensus 304 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 335 (409)
..+.+.|+-.+-+|++.|-.|....-..++-+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555555555555544433333333333
No 342
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.50 E-value=1.1e+02 Score=22.21 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=22.2
Q ss_pred HHHHHHhcC-ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329 121 IMMLYGKAG-MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL 166 (409)
Q Consensus 121 l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 166 (409)
++..+...+ ..-.|.++++.+.+.+...+..|.-.-|+.+.+.|-+
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 334443443 4455555665555554444444444445555444433
No 343
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.32 E-value=51 Score=19.64 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329 238 EIGNGLWNLMVCKGCFPNLATFNVRIQHL 266 (409)
Q Consensus 238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 266 (409)
++|++.|.+|++..-.+...||...|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554433334444555555544
No 344
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=32.10 E-value=2.8e+02 Score=24.90 Aligned_cols=141 Identities=14% Similarity=0.090 Sum_probs=87.6
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015329 235 NRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVY 314 (409)
Q Consensus 235 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 314 (409)
.+.+.|.++ ..+.|++--...|..-.+.+...|++++|-++-..... |+--+..|.+.+-..-...|...-.+.+|
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 555555443 34456655666677777888888888888877665433 33346777766665555567777778888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329 315 SAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388 (409)
Q Consensus 315 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (409)
..+.+.|- .+..----+++.-...|+.+-..+++.+ ..+..+...=..+ +..+...|..++.+..
T Consensus 419 ~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 419 GILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 88877753 3554444566666677777777666554 2344454433322 4446777777776653
No 345
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=31.77 E-value=1.2e+02 Score=21.86 Aligned_cols=14 Identities=7% Similarity=0.328 Sum_probs=6.9
Q ss_pred HHccCCHHHHHHHH
Q 015329 160 LTESRDLKAIQAFL 173 (409)
Q Consensus 160 ~~~~~~~~~a~~~~ 173 (409)
.++.|+.+.+..++
T Consensus 15 A~~~g~~~~v~~ll 28 (165)
T 3twr_A 15 AAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHhCCHHHHHHHH
Confidence 33445555555544
No 346
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.49 E-value=2.8e+02 Score=24.67 Aligned_cols=30 Identities=7% Similarity=-0.092 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329 218 KPDVITYTTLISAFYKDNRPEIGNGLWNLMVC 249 (409)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 249 (409)
..+......++.. ..|+..++..+++.+..
T Consensus 191 ~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 191 VLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp ECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 3455555555544 35677777766666654
No 347
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=31.32 E-value=1.7e+02 Score=22.07 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 015329 97 DYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKR 148 (409)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 148 (409)
+.+..+++.+...+.-.+..+....+....+.|.+ ....+-.++...||..
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH
Confidence 35666677777666665566666666666554432 2345566667777643
No 348
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.29 E-value=3.4e+02 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=18.3
Q ss_pred ChHHHHhhh---hcCChHHHHHHHHHhhcC
Q 015329 47 EPPALVKLK---AERDPEKLFQLFKANAHN 73 (409)
Q Consensus 47 ~~~~l~~~~---~~~~~~~a~~~~~~~~~~ 73 (409)
+..++..+. +..++..|+++|-.+...
T Consensus 356 ~arLI~~Yt~~F~~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 356 FANILANYTKSFRYSDPRVAVEYLVLITLN 385 (661)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Confidence 344444443 458999999999988433
No 349
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.96 E-value=1.2e+02 Score=20.05 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=19.8
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHH
Q 015329 236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA 275 (409)
Q Consensus 236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 275 (409)
..++|.++++.+...| ...|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4556666666665554 24455666666555554433
No 350
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.75 E-value=2.4e+02 Score=26.03 Aligned_cols=74 Identities=9% Similarity=0.005 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 015329 305 GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKA 380 (409)
Q Consensus 305 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 380 (409)
.+.+.......+++.+=.--+..-...++..|.+.|-.+.|.++++.+-.+-+ -+...+ .-+..|+|.|+++..
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHHHHcCChhhc
Confidence 34444555555555442122445566667777777777777777766544322 222333 334566666666544
No 351
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.52 E-value=1.1e+02 Score=21.54 Aligned_cols=46 Identities=7% Similarity=-0.012 Sum_probs=24.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329 297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF 342 (409)
Q Consensus 297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 342 (409)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3444444444555666666666555444555544455555555543
No 352
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.13 E-value=51 Score=25.42 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=10.2
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 015329 369 EGLKKNNQPCKANTIMALVQR 389 (409)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~ 389 (409)
..|.+.|.+++|.++|++..+
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 345555555555555555443
No 353
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.00 E-value=2.1e+02 Score=22.39 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 304 SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL 336 (409)
Q Consensus 304 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 336 (409)
..+.+.|+-.+-+|++.|-.|....-..++-+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345555555555555555444333333333333
No 354
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.79 E-value=3.4e+02 Score=24.78 Aligned_cols=67 Identities=7% Similarity=-0.007 Sum_probs=45.6
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCH--HHHH-HHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329 150 VKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDI--FSFN-IVIKAFCEMGILDKAYLVMVEMQKLG 216 (409)
Q Consensus 150 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~g 216 (409)
...+|.+++.|...+.++.|..+.....--....++. ..|. .+.+.+.-.+++.+|.+.|....+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3568899999999999999999986542111111222 2222 34566777899999999999887653
No 355
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.77 E-value=1e+02 Score=18.82 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 015329 294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE 339 (409)
Q Consensus 294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 339 (409)
++-++..++...-++.++..+++..+.|.. +...|-.-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 445556666655666777777777666643 556665555555543
No 356
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.40 E-value=76 Score=24.75 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=6.7
Q ss_pred HHccCCHHHHHHHH
Q 015329 160 LTESRDLKAIQAFL 173 (409)
Q Consensus 160 ~~~~~~~~~a~~~~ 173 (409)
.+..|+.+-+..++
T Consensus 84 A~~~~~~~~~~~Ll 97 (237)
T 3b7b_A 84 AAKKGHYEVVQYLL 97 (237)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33445555555444
No 357
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.25 E-value=43 Score=24.07 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=4.6
Q ss_pred CCCchhHHHHHH
Q 015329 93 ARRFDYIEHLLE 104 (409)
Q Consensus 93 ~~~~~~a~~~~~ 104 (409)
.|+.+.+..+++
T Consensus 12 ~g~~~~v~~ll~ 23 (156)
T 1bd8_A 12 RGDVQEVRRLLH 23 (156)
T ss_dssp HTCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 334333333333
No 358
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=28.09 E-value=3.1e+02 Score=24.05 Aligned_cols=141 Identities=9% Similarity=-0.022 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCC---hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHH
Q 015329 188 SFNIVIKAFCEMGI---LDKAYLVMVEMQKLG----VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFN 260 (409)
Q Consensus 188 ~~~~ll~~~~~~g~---~~~a~~~~~~m~~~g----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 260 (409)
.-..++...|..|+ .+.|.+.|+.....+ +.||... .+...- .+..++-..+++..... .+..--.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~--~~~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVG--AQSTEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHH--TTSHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeee--eCCHHHHHHHHHHHhcC---CCHHHHH
Confidence 34556677777776 456777787776532 4444322 111111 22233344555555553 2445566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhc-CCHHHHHHHHHH----HHhCCCCCCHHHHHHHHH
Q 015329 261 VRIQHLVNKRRSWQANKLMGLMQRFGI-EPDEVTYNLVIKGFCRS-GHLDMAKKVYSA----MLGRRLMPNRKIYQTMIH 334 (409)
Q Consensus 261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~-g~~~~a~~~~~~----m~~~~~~p~~~~~~~li~ 334 (409)
.++.+++...+.....++++......+ ++.. ... ++.+.+.. -..+.|++.+.+ +.+. +.++...+..++.
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD-~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~ 348 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQE-FPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVM 348 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGG-HHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhH-HHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHH
Confidence 777888778888888888877766543 4322 222 23333322 234455555443 2221 1223345666666
Q ss_pred HHHH
Q 015329 335 YLCQ 338 (409)
Q Consensus 335 ~~~~ 338 (409)
....
T Consensus 349 ~~~~ 352 (419)
T 3rjo_A 349 GTTN 352 (419)
T ss_dssp HTTT
T ss_pred HHhh
Confidence 5443
No 359
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=28.02 E-value=41 Score=19.10 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=11.8
Q ss_pred CChHHHHHHHHHhhcCCCC
Q 015329 58 RDPEKLFQLFKANAHNRIV 76 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~ 76 (409)
+|...|+++++...+.|.+
T Consensus 7 RDv~RaiELle~lq~sgev 25 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEV 25 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSS
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4556667777776666633
No 360
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.00 E-value=4.5e+02 Score=26.02 Aligned_cols=161 Identities=11% Similarity=0.096 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCh---hhHHHHHHHHHhcC----CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH
Q 015329 225 TTLISAFYKDNRP---EIGNGLWNLMVCKG----CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV 297 (409)
Q Consensus 225 ~~ll~~~~~~~~~---~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 297 (409)
..++...|..|.. +.|.+.|+.....+ ++||.. ..+...-.+.|+.++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4566777887765 46777787766532 445543 334444556777776666777766543 44445678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHH
Q 015329 298 IKGFCRSGHLDMAKKVYSAMLGRR-LMPNRKIYQTMIHYLCQEG-DFNLAYIMCKDSM---KKNWVPSVDTISALLEGLK 372 (409)
Q Consensus 298 i~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~---~~~~~~~~~~~~~l~~~~~ 372 (409)
+.+++...+.+...++++...... +++. ... .++.+..... ..+.|.+++.+=- ...+......+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888889888888888776543 3332 222 2333433322 2344555554311 1122233345667777766
Q ss_pred hCCChHHHHHHHHHHHhcCC
Q 015329 373 KNNQPCKANTIMALVQRRVP 392 (409)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~ 392 (409)
..-.-++-.+-++...+..+
T Consensus 843 ~~~~t~~~~~~~~~f~~~~~ 862 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKKNNM 862 (909)
T ss_dssp TTCCSHHHHHHHHHHHTTCS
T ss_pred HhcCCHHHHHHHHHHHhhCC
Confidence 65544444455555554443
No 361
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.55 E-value=83 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=10.4
Q ss_pred HhcCCCchhHHHHHHHhh
Q 015329 90 LAGARRFDYIEHLLEHQK 107 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~ 107 (409)
.++.|+.+.+..+++...
T Consensus 20 A~~~g~~~~v~~Ll~~~~ 37 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQ 37 (273)
T ss_dssp HHHTTCSSTTTTHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 345566666666665543
No 362
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.35 E-value=2.1e+02 Score=26.34 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHH
Q 015329 151 KSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKA 205 (409)
Q Consensus 151 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 205 (409)
.-...++..|.+.|-.+.+..+++.+..+. --+...+ ..+..|.++|+++.+
T Consensus 517 dd~e~vL~iCa~l~L~~~ar~I~k~~g~k~--l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 517 DDIEWMLSICVEWRLPEIAKEIYTTLGNQM--LSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHH--HHCccHH-HHHHHHHHcCChhhc
Confidence 344555555666666655555554432221 1122233 334455555555543
No 363
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=26.94 E-value=91 Score=18.32 Aligned_cols=17 Identities=6% Similarity=-0.091 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHhhcCC
Q 015329 58 RDPEKLFQLFKANAHNR 74 (409)
Q Consensus 58 ~~~~~a~~~~~~~~~~~ 74 (409)
...++|..+-+|+...+
T Consensus 20 HcH~EA~tIA~~L~~~~ 36 (61)
T 3ph0_C 20 HCHQEAASIADWLAQEE 36 (61)
T ss_dssp TCHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 45566666666665544
No 364
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.90 E-value=94 Score=22.26 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHc
Q 015329 274 QANKLMGLMQRF 285 (409)
Q Consensus 274 ~a~~~~~~~~~~ 285 (409)
.|.++++.+.+.
T Consensus 31 sa~eI~~~l~~~ 42 (139)
T 3mwm_A 31 SAQELHDMLKHK 42 (139)
T ss_dssp EHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh
Confidence 334444444333
No 365
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.84 E-value=95 Score=24.64 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=35.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHc---CChhhHHHHHHHHHh
Q 015329 192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDV-------ITYTTLISAFYKD---NRPEIGNGLWNLMVC 249 (409)
Q Consensus 192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~m~~ 249 (409)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 344566778888887788877776654433 334444444 444 777777766665544
No 366
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.84 E-value=2.1e+02 Score=24.18 Aligned_cols=16 Identities=0% Similarity=-0.070 Sum_probs=9.9
Q ss_pred HHhCCChHHHHHHHHH
Q 015329 371 LKKNNQPCKANTIMAL 386 (409)
Q Consensus 371 ~~~~g~~~~a~~~~~~ 386 (409)
.++.|+.+-+.-+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3455777766666664
No 367
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.91 E-value=2.2e+02 Score=21.60 Aligned_cols=77 Identities=9% Similarity=-0.021 Sum_probs=43.2
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--------------CH-HHHH
Q 015329 268 NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM--P--------------NR-KIYQ 330 (409)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--------------~~-~~~~ 330 (409)
-.|.+..++-++...- ..+..-|..| +|-+..++..|...++.+.+..+. | |. ..|+
T Consensus 45 yngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 45 LNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 4677777666554321 1122223332 456778888888888888866443 2 12 2334
Q ss_pred HHHHHHHHcCCHhHHHHHHH
Q 015329 331 TMIHYLCQEGDFNLAYIMCK 350 (409)
Q Consensus 331 ~li~~~~~~g~~~~a~~~~~ 350 (409)
.+...|...|+-++|...+.
T Consensus 119 l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhh
Confidence 44555555666666666655
No 368
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.90 E-value=30 Score=28.05 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=28.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHH--cCChhhHHHHHHHH
Q 015329 194 KAFCEMGILDKAYLVMVEMQKLGVKP-------DVITYTTLISAFYK--DNRPEIGNGLWNLM 247 (409)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~-------~~~~~~~ll~~~~~--~~~~~~a~~~~~~m 247 (409)
...++.|+.+.+..+++...+.+... +..-++.|..++.. .|+.+-+..+++.-
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 34456677777777777666554322 22334445444432 36665555555543
No 369
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=25.72 E-value=2.8e+02 Score=22.87 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=6.0
Q ss_pred HHHHHHHHcCCCc
Q 015329 277 KLMGLMQRFGIEP 289 (409)
Q Consensus 277 ~~~~~~~~~~~~p 289 (409)
++++.+.+.|..+
T Consensus 228 ~~~~~Ll~~g~~~ 240 (351)
T 3utm_A 228 QVAELLLRKGANV 240 (351)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHcCCCc
Confidence 3444445555443
No 370
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=25.21 E-value=2.8e+02 Score=22.68 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=13.0
Q ss_pred CCHhHHHHHHHHHHH-cCCCc
Q 015329 270 RRSWQANKLMGLMQR-FGIEP 289 (409)
Q Consensus 270 ~~~~~a~~~~~~~~~-~~~~p 289 (409)
|+.++|.+++..+.. .|..|
T Consensus 241 ~~~~~a~~~l~~l~~~~g~~~ 261 (319)
T 2chq_A 241 GNFMEARELLDRLMVEYGMSG 261 (319)
T ss_dssp TCHHHHHHHHHHHHHHSCCCH
T ss_pred CCHHHHHHHHHHHHHHcCCCH
Confidence 667777777777665 66543
No 371
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.03 E-value=1.1e+02 Score=26.83 Aligned_cols=214 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC
Q 015329 85 DTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR 164 (409)
Q Consensus 85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 164 (409)
+.+...+..|+.+-+..+++. ...+........+.+...+..|+.+-+.-+++. ...+......-.+.+...+..|
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCC
Q ss_pred CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 015329 165 DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLW 244 (409)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 244 (409)
..+-+..+++. ...+......-.+.+...+..|+.+.+..+++.-...... +...++.+..+..... .+++
T Consensus 92 ~~~~v~~Ll~~---ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~g~-----~~~v 162 (437)
T 1n11_A 92 HTNMVKLLLEN---NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGK-----VRVA 162 (437)
T ss_dssp CHHHHHHHHHH---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTC-----HHHH
T ss_pred CHHHHHHHHhC---CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHcCC-----HHHH
Q ss_pred HHHHhcCCCCCHh--hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHH--HHHHHHHHhcCCHHHHHHHHH
Q 015329 245 NLMVCKGCFPNLA--TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTY--NLVIKGFCRSGHLDMAKKVYS 315 (409)
Q Consensus 245 ~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~ 315 (409)
+.+.+.|..++.. .-.+.+...+..|+. ++++.+.+.|..++...+ ...+...+..|+.+-+..+++
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNL----DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCHHHHHHHTTCH----HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
No 372
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.97 E-value=1.6e+02 Score=20.55 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=10.6
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 015329 300 GFCRSGHLDMAKKVYSAMLG 319 (409)
Q Consensus 300 ~~~~~g~~~~a~~~~~~m~~ 319 (409)
.+...++++.|..+...+..
T Consensus 70 ~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 70 QELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33445556666555555543
No 373
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.78 E-value=2.3e+02 Score=21.48 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHH--HHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329 356 NWVPSVDTISAL--LEGLKKNNQPCKANTIMALVQRRVPHF 394 (409)
Q Consensus 356 ~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (409)
+..|...+|..- ...|...|..++...+|..+++.+|.+
T Consensus 201 n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 201 EHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp TSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 346777776443 366788999999999999999988754
No 374
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=24.57 E-value=5.2e+02 Score=25.55 Aligned_cols=159 Identities=8% Similarity=-0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCH---HHHHHHHHhcCccC---CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329 154 NAALKVLTESRDL---KAIQAFLMEVPEKF---HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTL 227 (409)
Q Consensus 154 ~~ll~~~~~~~~~---~~a~~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 227 (409)
..++...|..|.. +.|.+.|++.+... .++||....-.-... |.-++-..+++...+ ..+..--..+
T Consensus 684 ~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~----g~~~~~~~l~~~y~~---~~~~~ek~~l 756 (897)
T 2xdt_A 684 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA----QSTEGWDFLYSKYQF---SLSSTEKSQI 756 (897)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT----TSHHHHHHHHHHHTT---CCCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec----CCHHHHHHHHHHHHc---cCCHHHHHHH
Q ss_pred HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH---HHHcCCCcCHHHHHHHHHHHHhc
Q 015329 228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL---MQRFGIEPDEVTYNLVIKGFCRS 304 (409)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~p~~~~~~~li~~~~~~ 304 (409)
+.+++...+.....++++.....+..........+..........+.+++.+.+ -.......+..++..++......
T Consensus 757 l~aL~c~~~~~~l~~~L~~~~~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~~~~~~~~~~~i~~~~~~ 836 (897)
T 2xdt_A 757 EFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQ 836 (897)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHHCTTCHHHHHHHHHTTTT
T ss_pred HHHhccCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhc
Q ss_pred CCHHHHHHHHHHHHh
Q 015329 305 GHLDMAKKVYSAMLG 319 (409)
Q Consensus 305 g~~~~a~~~~~~m~~ 319 (409)
-..++-.+-++...+
T Consensus 837 ~~t~~~~~~~~~f~~ 851 (897)
T 2xdt_A 837 FSTRTRLEEVKGFFS 851 (897)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
No 375
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.43 E-value=2.3e+02 Score=21.43 Aligned_cols=10 Identities=10% Similarity=-0.097 Sum_probs=3.7
Q ss_pred HHHHHHHHcC
Q 015329 226 TLISAFYKDN 235 (409)
Q Consensus 226 ~ll~~~~~~~ 235 (409)
..+.++.+.+
T Consensus 100 ~a~~aL~~~~ 109 (211)
T 3ltm_A 100 SAAVALGQIG 109 (211)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 3333333333
No 376
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.26 E-value=1.2e+02 Score=19.99 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=28.7
Q ss_pred cCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH-----HHhcCChHHHHHHHHHhh
Q 015329 92 GARRFDYIEHLLEHQKSLPQGRREGFIMRIMML-----YGKAGMIKHAMDTFYDMH 142 (409)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~ 142 (409)
..|++-+|.++++..-.....+...++..||+. ..+.|+. |..++.+..
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~ 66 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAE 66 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 347888888888777655444445666655543 2245555 665555543
No 377
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=23.47 E-value=1.5e+02 Score=20.34 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=13.5
Q ss_pred HhcCCCchhHHHHHHHhh
Q 015329 90 LAGARRFDYIEHLLEHQK 107 (409)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~ 107 (409)
.++.|+|++|.+.+++..
T Consensus 32 ~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 457788888888887754
No 378
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.84 E-value=2.6e+02 Score=29.14 Aligned_cols=33 Identities=12% Similarity=0.001 Sum_probs=16.4
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHH
Q 015329 127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLT 161 (409)
Q Consensus 127 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 161 (409)
..+++..|++++.++.+. +|+...|..++..+.
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~ 1328 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAING 1328 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 455555555555555544 244444444444443
No 379
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.82 E-value=2.9e+02 Score=22.31 Aligned_cols=8 Identities=13% Similarity=0.385 Sum_probs=3.5
Q ss_pred HhcCCHHH
Q 015329 302 CRSGHLDM 309 (409)
Q Consensus 302 ~~~g~~~~ 309 (409)
+..|+.+-
T Consensus 230 ~~~~~~~~ 237 (285)
T 3d9h_A 230 VRTASEEL 237 (285)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 34455443
No 380
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.28 E-value=3.7e+02 Score=23.05 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=35.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCC--chhHHHHHHHhhhCCCCCChhHHHHHHHH
Q 015329 49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARR--FDYIEHLLEHQKSLPQGRREGFIMRIMML 124 (409)
Q Consensus 49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (409)
.++..+...++.++|...++.+.... . .......+|......++ -+.+-.++..+.. +.-....+...+...
T Consensus 59 ~ii~EYf~~~d~~Ea~~~l~eL~~p~-~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~l 132 (358)
T 3eiq_C 59 PIIQEYFEHGDTNEVAEMLRDLNLGE-M--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKL 132 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTTCCG-G--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCch-h--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 34455666788888888888875322 1 22223333433333332 2334555555553 333334444433333
No 381
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.23 E-value=1.3e+02 Score=22.41 Aligned_cols=59 Identities=7% Similarity=0.073 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--hHHHHHHHHHH
Q 015329 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF--NLAYIMCKDSM 353 (409)
Q Consensus 293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~ 353 (409)
....++.=|...|+.++|...++++...... ......+|..-...++. +.+-.++..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~--~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGG--GHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456777888889999999999887643222 22233334333333322 23455666653
No 382
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.01 E-value=2.5e+02 Score=21.50 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=23.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHH
Q 015329 122 MMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFL 173 (409)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 173 (409)
+...+..|+++....++..-...--.++..-+ ..+...+..|+.+.+..++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll 60 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLL 60 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSC-CHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCC-CHHHHHHHcCcHHHHHHHH
Confidence 34445667777666666553221001122111 2233344556666665555
No 383
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.94 E-value=3.7e+02 Score=22.50 Aligned_cols=107 Identities=7% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHH
Q 015329 277 KLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDS 352 (409)
Q Consensus 277 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m 352 (409)
++++.+.+.|+.|...++..++..|.+.=.++.+..+|+.+...|...-.....+++..+.. ..++++...+++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 015329 353 MKKNWVPSVDTISALLEGLKKNNQPCKANTIMAL 386 (409)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 386 (409)
.. ..+......++.--......+...++-.+
T Consensus 289 ~p---~~~~~di~~li~~A~~l~~s~~l~~~e~e 319 (331)
T 3qye_A 289 LP---NLGLVQMEKTINQVFEMDIAKQLQAYEVE 319 (331)
T ss_dssp TT---CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CC---CCCHHHHHHHHHHHHhCCchHHHHHHHHH
No 384
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.52 E-value=3.6e+02 Score=22.59 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=47.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329 155 AALKVLTESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAF 231 (409)
Q Consensus 155 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 231 (409)
..+...+..|+.+.+..+++. |..++ ..-++ .+...+..|+.+-+.-+ .+.|..++...-...+...
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIET-----GVSPTIQNRFGCT-ALHLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTCCC-HHHHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHc-----CCCccccCCCCCc-HHHHHHHcCCHHHHHHH----HHCCCCccccCCCCHHHHH
Confidence 344555567888887777743 22222 22233 34445556666544433 3334333331112233444
Q ss_pred HHcCChhhHHHHHHHHHhcCCCCCH
Q 015329 232 YKDNRPEIGNGLWNLMVCKGCFPNL 256 (409)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~~~~~~~ 256 (409)
+..|+.+-+..+++.....|..++.
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHcCCHHHHHHHHHhccccCCCHHH
Confidence 5667777777666666655655544
No 385
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.17 E-value=96 Score=23.13 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 015329 189 FNIVIKAFCEMGILDKAYLVMVEMQ 213 (409)
Q Consensus 189 ~~~ll~~~~~~g~~~~a~~~~~~m~ 213 (409)
...+++-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556677777777777777777765
No 386
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.14 E-value=3.7e+02 Score=22.19 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=11.6
Q ss_pred HHHhhhhcCChHHHHHHHHH
Q 015329 50 ALVKLKAERDPEKLFQLFKA 69 (409)
Q Consensus 50 ~l~~~~~~~~~~~a~~~~~~ 69 (409)
.|....+.|+.+.+..+++.
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34555566776665555544
No 387
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=20.02 E-value=3.5e+02 Score=22.42 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---cCCHhHHHHHHHHHH
Q 015329 207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN---KRRSWQANKLMGLMQ 283 (409)
Q Consensus 207 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~ 283 (409)
++++.+.+.|+.|...++..++..+.+.=..+.+.++|+.+...|...-....-+++..+.. ..+.++...++..-.
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~l 254 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQL 254 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q ss_pred HcCCCcCHHHHHHHHHHHH
Q 015329 284 RFGIEPDEVTYNLVIKGFC 302 (409)
Q Consensus 284 ~~~~~p~~~~~~~li~~~~ 302 (409)
-.....+...-..+-.|+.
T Consensus 255 p~~~~~~~d~~~ll~~A~~ 273 (310)
T 3hzj_A 255 PKRYRAEENARRLMEQACN 273 (310)
T ss_dssp HHTTCSHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHh
Done!