BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015331
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 11/313 (3%)
Query: 8 VIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQ 67
+++GAGI GL+ ++AL + GI G AI++W N + + +G+ D +
Sbjct: 27 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 86
Query: 68 QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS 127
L+ M S + ++ S R G V R+ L + ++++
Sbjct: 87 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 146
Query: 128 KVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGCT 185
+V EE V DG+ +LI DG +S + W LGF + +AG + G
Sbjct: 147 RVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLV 206
Query: 186 DFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPDKTKQFVL 244
+ ++ F+G+G + +P + Y+FF+ P+ ++ + ++
Sbjct: 207 EIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA 266
Query: 245 SKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304
+ + + A+ T + I + + + + +G V + GDA H TPDIG
Sbjct: 267 GWAPPVQKLIAALDPQT-TNRIEIHDIE-------PFSRLVRGRVALLGDAGHSTTPDIG 318
Query: 305 QGGCAALEDGIIL 317
QGGCAA+ED ++L
Sbjct: 319 QGGCAAMEDAVVL 331
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 130/313 (41%), Gaps = 11/313 (3%)
Query: 8 VIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQ 67
+++GAGI GL+ ++AL + GI G AI++W N + +G D
Sbjct: 27 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXGDIXET 86
Query: 68 QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS 127
L+ S + ++ S R G V R+ L ++++
Sbjct: 87 FGGPLRRXAYRDFRSGENXTQFSLAPLIERTGSRPCPVSRAELQREXLDYWGRDSVQFGK 146
Query: 128 KVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFK-KPAFAGRSDIRGCT 185
+V EE V DG+ +LI DG +S + W LGF + +AG + G
Sbjct: 147 RVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLV 206
Query: 186 DFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW-CPSNQDKELEGNPDKTKQFVL 244
+ ++ F+G+G R P + Y+FF+ P+ ++ + ++
Sbjct: 207 EIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA 266
Query: 245 SKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304
+ + + A+ T + I + + + + +G V + GDA H TPDIG
Sbjct: 267 GWAPPVQKLIAALDPQT-TNRIEIHDIE-------PFSRLVRGRVALLGDAGHSTTPDIG 318
Query: 305 QGGCAALEDGIIL 317
QGGCAA ED ++L
Sbjct: 319 QGGCAAXEDAVVL 331
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 9 IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
+ G G AGLT ++AL + G G I LW N R L+ +G D +
Sbjct: 16 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 69 HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
LQG + ++ K N G R + RS L +AL R G I +
Sbjct: 73 ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 127
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
S+ V+ + G L G V + +++G DGV S V +GFK+ + + +
Sbjct: 128 SEAVAADPVGRL---TLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 179
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
+L + P+ ++ LG G + F P + +Y P N+++ G
Sbjct: 180 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILY-----SPCNENELYLG---LMA 228
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
+ +P ++ VE P +++ + RY + ++G V + GD
Sbjct: 229 PAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKAETTKLDSWTRGKVALVGD 288
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
A H M P + QG A+ + L++ + E S+
Sbjct: 289 AAHAMCPALAQGAGCAMVNAFSLSQDLEEGSS 320
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 9 IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
+ G G AGLT ++AL + G G I LW N R L+ +G D +
Sbjct: 16 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 69 HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
LQG + ++ K N G R + RS L +AL R G I +
Sbjct: 73 ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 127
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
S+ V+ + G L G V + +++G DGV S V +GFK+ + + +
Sbjct: 128 SEAVAADPVGRL---TLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 179
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
+L + P+ ++ LG G + F P + +Y P N+++ G
Sbjct: 180 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILY-----SPCNENELYLG---LMA 228
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
+ +P ++ VE P +++ + RY + ++G V + GD
Sbjct: 229 PAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGD 288
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
A H M P + QG A+ + L++ + E S+
Sbjct: 289 AAHAMCPALAQGAGCAMVNAFSLSQDLEEGSS 320
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 41/332 (12%)
Query: 9 IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
+ G G AGLT ++AL + G G I LW N R L+ +G D +
Sbjct: 52 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 108
Query: 69 HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
LQG + ++ K N G R + RS L +AL R G I +
Sbjct: 109 ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 163
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
S+ V+ + G + L G V + +++G DGV S V +GFK+ + + +
Sbjct: 164 SEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 215
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
+L + P+ ++ LG G + F P + +Y P N+++ G
Sbjct: 216 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILY-----SPCNENELYLGLMAPAA 267
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
+ +P ++ VE P +++ + RY + ++G V + GD
Sbjct: 268 D---PRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGD 324
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
A H M P + QG A+ + L++ + E S+
Sbjct: 325 AAHAMCPALAQGAGCAMVNAFSLSQDLEEGSS 356
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 9 IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
+ G G AGLT ++AL + G G I LW N R L+ +G D +
Sbjct: 16 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 69 HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
LQG + ++ K N G R + RS L +AL R G I +
Sbjct: 73 ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 127
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
S+ V+ + G L G V + +++G DGV S V +GFK+ + + +
Sbjct: 128 SEAVAADPVGRL---TLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 179
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
+L + P+ ++ LG G + F P + +Y P N+++ G
Sbjct: 180 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILY-----SPCNENELYLG---LMA 228
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
+ +P ++ VE P +++ + RY + ++G V + GD
Sbjct: 229 PAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKFETTKLDSWTRGKVALVGD 288
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
A H M P + QG A+ + L++ + E S+
Sbjct: 289 AAHAMCPALAQGAGCAMVNAFSLSQDLEEGSS 320
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 137/362 (37%), Gaps = 64/362 (17%)
Query: 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXT-GFAITLWTNAWRALDAV 59
M E DI+I GAGI GL+ +LALH+ GI G I + A AL +
Sbjct: 1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL 60
Query: 60 GISDSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS----LLMEALE 115
G+ +L I + SE GN + S+ R +L+ A+
Sbjct: 61 GLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGN--AYPQYSIHRGELQMILLAAVR 118
Query: 116 RELPSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGVNSVVAKWLGF- 170
L +R V +EE L+ DG VL+G DG++S V L
Sbjct: 119 ERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPD 178
Query: 171 KKP-AFAGRSDIRGCTDFKLRHGLEPKFQQFL-GKGFRYGFLPCNDQTVYW--------- 219
++P + G + RG T+ F +FL GK + ND+ +W
Sbjct: 179 QRPLSHGGITMWRGVTE----------FDRFLDGK----TMIVANDE--HWSRLVAYPIS 222
Query: 220 ---------FFNW---CPS----NQDKELEGNPDKTKQFVLSKCHDLPE---QVKAIVEN 260
NW PS D E + N D + VL D ++ ++
Sbjct: 223 ARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTR 282
Query: 261 TPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARC 320
L IL P+ R P WG +G + + GDA H M P G A+ DGI LA
Sbjct: 283 NQL--ILQYPMVDRDPLP-HWG---RGRITLLGDAAHLMYPMGANGASQAILDGIELAAA 336
Query: 321 IA 322
+A
Sbjct: 337 LA 338
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 132/332 (39%), Gaps = 41/332 (12%)
Query: 9 IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
+ G G AGLT ++AL + G G I LW N R L+ +G D +
Sbjct: 52 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 108
Query: 69 HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
LQG + ++ K N G R RS L +AL R G I +
Sbjct: 109 ---LQGSHTPPTYETWXHNKSVSKETFN--GLPWRIXTRSHLHDALVNRARALGVDISVN 163
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
S+ V+ + G + L G V + +++G DGV S V +GFK+ + + +
Sbjct: 164 SEAVAADPVGR---LTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 215
Query: 187 FKLRHGLEPKFQQFLGKGF------RYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTK 240
+L + P+ ++ LG G + F P + +Y P N+++ G
Sbjct: 216 IRL---IVPRXKKELGHGEWDNTIDXWNFWPRVQRILY-----SPCNENELYLGLXAPAA 267
Query: 241 QFVLSKCHDLPEQVKAIVENTP------LDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294
+ +P ++ VE P +++ + RY + ++G V + GD
Sbjct: 268 D---PRGSSVPIDLEVWVEXFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGD 324
Query: 295 AFHPMTPDIGQGGCAALEDGIILARCIAEAST 326
A H P + QG A + L++ + E S+
Sbjct: 325 AAHAXCPALAQGAGCAXVNAFSLSQDLEEGSS 356
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 115/288 (39%), Gaps = 64/288 (22%)
Query: 104 SVKRSLLMEALERELPSGTIRYSSKVVSVE--ESGLFKLVNLADGAVFKTKVLIGCDGVN 161
S+ R+ L E L + L + TI+++ V E E+G K+ ADG+ VL+G DG N
Sbjct: 108 SISRTELKEILNKGL-ANTIQWNKTFVRYEHIENGGIKIF-FADGSHENVDVLVGADGSN 165
Query: 162 SVVAK-WLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYG----FLPCNDQT 216
S V K +L F + G S I G R L P L + FR G +P ++
Sbjct: 166 SKVRKQYLPFIERFDVGVSXIIG------RARLTPALTALLPQNFRDGTPNSIVP---KS 216
Query: 217 VYWFF--NW-CPSNQDKE-----------------LEGNPDKTKQFVLSKCHDLPEQVKA 256
W F W P N E + PD F DL Q +
Sbjct: 217 PDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDL-VQSRX 275
Query: 257 IVENTPLDSIL-------VSPLRYR-----YPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304
I + L +++ +SPL R PW+ V + GDA H TP G
Sbjct: 276 ISWDPSLHTLVQQSDXENISPLHLRSXPHLLPWK-------SSTVTLLGDAIHNXTPXTG 328
Query: 305 QGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKR---NEI 349
G AL D ++L + +A ++ V KA D E+ R NEI
Sbjct: 329 SGANTALRDALLLTQKLASVASGHEELV---KAISDYEQQXRAYANEI 373
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 130/350 (37%), Gaps = 50/350 (14%)
Query: 6 DIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXT-GFAITLWTNAWRALDAVGISDS 64
DI+I GAGI GL+ +LALH+ GI G I + A AL +G+ +
Sbjct: 6 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65
Query: 65 LRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRS----LLMEALERELPS 120
L I + SE GN + S+ R +L+ A+ L
Sbjct: 66 LAATAIPTHELRYIDQSGATVWSEPRGVEAGN--AYPQYSIHRGELQXILLAAVRERLGQ 123
Query: 121 GTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGVNSVVAKWLGF-KKP-A 174
+R V +EE L+ DG VL+G DG++S V L ++P +
Sbjct: 124 QAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLS 183
Query: 175 FAGRSDIRGCTDFKLRHGLEPKF-----QQFLGKGFRYGFLPCNDQTVYWFFNW---CPS 226
G + RG T+F L+ K + + Y + NW PS
Sbjct: 184 HGGITXWRGVTEFD--RFLDGKTXIVANDEHWSRLVAYPISARHAAEGKSLVNWVCXVPS 241
Query: 227 NQ----DKELEGNPDKTKQFVLS----------KCHDLPEQVKAIVENTPLDSILVSPLR 272
D E + N D + VL DL + + I++ +D PL
Sbjct: 242 AAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPXVDR---DPLP 298
Query: 273 YRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIA 322
+ WG +G + + GDA H P G A+ DGI LA +A
Sbjct: 299 H-------WG---RGRITLLGDAAHLXYPXGANGASQAILDGIELAAALA 338
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 36/227 (15%)
Query: 9 IVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDSLRQQ 68
+ G G AGLT ++AL + G G I LW N R L+ +G D +
Sbjct: 16 VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 69 HIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEAL-ERELPSGT-IRYS 126
LQG + ++ K N G R + RS L +AL R G I +
Sbjct: 73 ---LQGSHTPPTYETWMHNKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVN 127
Query: 127 SKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTD 186
S+ V+ + G L G V + +++G DGV S V +GFK+ + + +
Sbjct: 128 SEAVAADPVGRL---TLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL----- 179
Query: 187 FKLRHGLEPKFQQFLGKG---------------FRYGFLPCNDQTVY 218
+L + P+ ++ LG G R + PCN+ +Y
Sbjct: 180 IRL---IVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELY 223
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 145/375 (38%), Gaps = 42/375 (11%)
Query: 4 DEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISD 63
D+++ I+G G GLT + L + GI F TL + +A+ +
Sbjct: 6 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA- 64
Query: 64 SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTI 123
L Q + L + + +++ + + +S K + + R+ L L L + T+
Sbjct: 65 GLLQTYYDL-ALPMGVNIADKKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTV 123
Query: 124 RYSSKVVSVEE-------------SGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGF 170
+ K+V +E S LV LA+G + K + + ++ V + F
Sbjct: 124 IWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFV----TDTEVEETGTF 179
Query: 171 KKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFL---PCNDQTVYWFFNW-CPS 226
A + +I F+L +G L + L P N+ +++ ++ P
Sbjct: 180 NIQADIHQPEINCPGFFQLCNG------NRLMASHQGNLLFANPNNNGALHFGISFKTPD 233
Query: 227 ---NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGN 283
NQ + N + F+L K D E+ K ++ T V +P E W +
Sbjct: 234 EWKNQTQVDFQNRNSVVDFLLKKFSDWDERYKELIHAT---LSFVGLATRIFPLEKPWKS 290
Query: 284 ISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKD-------K 336
+ + GDA H M P GQG + L D +IL+ +A+ K+
Sbjct: 291 KRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIY 350
Query: 337 AGEDKEEFKRNEIGL 351
E +EE +NEI +
Sbjct: 351 GKEAQEESTQNEIEM 365
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 145/375 (38%), Gaps = 42/375 (11%)
Query: 4 DEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISD 63
D+++ I+G G GLT + L + GI F TL + +A+ +
Sbjct: 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA- 84
Query: 64 SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTI 123
L Q + L + + +++ + + +S K + + R+ L L L + T+
Sbjct: 85 GLLQTYYDL-ALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTV 143
Query: 124 RYSSKVVSVEE-------------SGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGF 170
+ K+V +E S LV LA+G + K + + ++ V + F
Sbjct: 144 IWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFV----TDTEVEETGTF 199
Query: 171 KKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFL---PCNDQTVYWFFNW-CPS 226
A + +I F+L +G L + L P N+ +++ ++ P
Sbjct: 200 NIQADIHQPEINCPGFFQLCNG------NRLMASHQGNLLFANPNNNGALHFGISFKTPD 253
Query: 227 ---NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGN 283
NQ + N + F+L + D E+ K ++ T V +P E W +
Sbjct: 254 EWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTT---LSFVGLATRIFPLEKPWKS 310
Query: 284 ISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKD-------K 336
+ + GDA H M P GQG + L D +IL+ +A+ K+
Sbjct: 311 KRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIY 370
Query: 337 AGEDKEEFKRNEIGL 351
E +EE +NEI +
Sbjct: 371 GKEAQEESTQNEIEM 385
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 148/377 (39%), Gaps = 46/377 (12%)
Query: 4 DEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISD 63
D+++ I+G G GLT + L + GI F TL + +A+ +
Sbjct: 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAG 85
Query: 64 SLRQQH-IQLQGMVVASSVSCQPASEISFKTKGNRGGHEV-RSVKRSLLMEALERELPSG 121
L+ + + L V + + S + K + E+ R+ R++L+ +LE +
Sbjct: 86 LLQTYYDLALPMGVNIADAAGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEND---- 141
Query: 122 TIRYSSKVVSVEE-------------SGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL 168
T+ + K+V +E S LV LA+G + K + + ++ V +
Sbjct: 142 TVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFV----TDTEVEETG 197
Query: 169 GFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFL---PCNDQTVYWFFNW-C 224
F A + +I F+L +G L + L P N+ +++ ++
Sbjct: 198 TFNIQADIHQPEINCPGFFQLCNG------NRLMASHQGNLLFANPNNNGALHFGISFKT 251
Query: 225 PS---NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLW 281
P NQ + N + F+L + D E+ K ++ T V +P E W
Sbjct: 252 PDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTT---LSFVGLATRIFPLEKPW 308
Query: 282 GNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKD------ 335
+ + + GDA H M P GQG + L D +IL+ +A+ K+
Sbjct: 309 KSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMF 368
Query: 336 -KAGEDKEEFKRNEIGL 351
E +EE +NEI +
Sbjct: 369 IYGKEAQEESTQNEIEM 385
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 36/222 (16%)
Query: 107 RSLLMEALERELPSGTIRYSSKVVSVE--ESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164
R L++E ++ E + + + +++ +V+ E V L DG V + +V++G DG+ S V
Sbjct: 110 RRLVLEKIDGE-ATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYV 168
Query: 165 AKWL--------GFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT 216
+ L + P G + C + R ++ + G Y F P
Sbjct: 169 RRRLLDIDVERRPYPSPMLVGTFALAPCVAERNRLYVDSQ------GGLAY-FYPIGFDR 221
Query: 217 VYWFFNWCPSNQDKEL------EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSP 270
++ P + +EL E + ++FV + E + A+ + I +
Sbjct: 222 ARLVVSF-PREEARELMADTRGESLRRRLQRFVGDES---AEAIAAVTGTSRFKGIPIGY 277
Query: 271 LRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE 312
L W NV + GDA H + P GQG A+E
Sbjct: 278 LNLDRYW--------ADNVAMLGDAIHNVHPITGQGMNLAIE 311
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 145/375 (38%), Gaps = 42/375 (11%)
Query: 4 DEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISD 63
D+++ I+G G GLT + L + GI F TL + +A+ +
Sbjct: 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA- 84
Query: 64 SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTI 123
L Q + L + + +++ + + +S K + + R+ L L L + T+
Sbjct: 85 GLLQTYYDL-ALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTV 143
Query: 124 RYSSKVVSVEE-------------SGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGF 170
+ K+V +E S LV LA+G + K + + ++ V + F
Sbjct: 144 IWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFV----TDTEVEETGTF 199
Query: 171 KKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFL---PCNDQTVYWFFNW-CPS 226
A + +I F+L +G L + L P N+ +++ ++ P
Sbjct: 200 NIQADIHQPEINCPGFFQLCNG------NRLMASHQGNLLFANPNNNGALHFGISFKTPD 253
Query: 227 ---NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGN 283
NQ + N + F+L + D ++ K ++ T V +P E W +
Sbjct: 254 EWKNQTQVDFQNRNSVVDFLLKEFSDWDKRYKELIHTT---LSFVGLATRIFPLEKPWKS 310
Query: 284 ISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKD-------K 336
+ + GDA H M P GQG + L D +IL+ +A+ K+
Sbjct: 311 KRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIY 370
Query: 337 AGEDKEEFKRNEIGL 351
E +EE +NEI +
Sbjct: 371 GKEAQEESTQNEIEM 385
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 74/354 (20%), Positives = 131/354 (37%), Gaps = 61/354 (17%)
Query: 6 DIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISDS- 64
D+++VGAG+ GL+T++ L R G+ A L G++D
Sbjct: 7 DVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEV 66
Query: 65 LRQQHIQ-------------LQGMV-----------VASSVSCQPASEISFKTKGNRGGH 100
+R I+ ++G + VA++ C PA
Sbjct: 67 VRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQD------ 120
Query: 101 EVRSVKRSLLMEALERELPSGTIRYSSKVVSVEE------SGLFKLVNLADGAV-FKTKV 153
++ LL +A + G IR+ ++++S + +G+ + DG +
Sbjct: 121 ---KLEPILLAQARKH---GGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGY 174
Query: 154 LIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCT-DFKLRHGLEP---KFQQFLGKGFRYGF 209
L+G DG S+V + LG + + + G D L +EP + F+ F
Sbjct: 175 LVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTF 234
Query: 210 LPCNDQTVYWFF-NWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILV 268
P + + F + P ++ + P + + + D PE +V+ +
Sbjct: 235 GPTDRPDRHTLFVEYDPDEGERPEDFTPQRCVELI-GLALDAPEVKPELVDIQGWEMAAR 293
Query: 269 SPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIA 322
R+R +G V +AGDA P G G AA+ DG LA +A
Sbjct: 294 IAERWR-----------EGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLA 336
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 76/371 (20%), Positives = 136/371 (36%), Gaps = 38/371 (10%)
Query: 4 DEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISD 63
D+++ I+G G GLT + L + GI F TL + +A +
Sbjct: 6 DKNVAIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAXKKA- 64
Query: 64 SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTI 123
L Q + L + +++ + + +S K + + R+ L L L + T+
Sbjct: 65 GLLQTYYDL-ALPXGVNIADKKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTV 123
Query: 124 RYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRG 183
+ K+V +E + + ++I +G S V K F +++
Sbjct: 124 IWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKVRK--------FVTDTEVEE 175
Query: 184 CTDFKLRHGLE------PKFQQF-----LGKGFRYGFL---PCNDQTVYWFFNW-CPS-- 226
F ++ + P F Q L + L P N+ +++ ++ P
Sbjct: 176 TGTFNIQADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNNNGALHFGISFKTPDEW 235
Query: 227 -NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNIS 285
NQ + N + F+L K D E+ K ++ T V +P E W +
Sbjct: 236 KNQTQVDFQNRNSVVDFLLKKFSDWDERYKELIHTT---LSFVGLATRIFPLEKPWKSKR 292
Query: 286 KGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKD-------KAG 338
+ GDA H P GQG + L D +IL+ +A+ K+
Sbjct: 293 PLPITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQXFIYGK 352
Query: 339 EDKEEFKRNEI 349
E +EE +NEI
Sbjct: 353 EAQEESTQNEI 363
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 75/371 (20%), Positives = 136/371 (36%), Gaps = 38/371 (10%)
Query: 4 DEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISD 63
D+++ I+G G GLT + L + GI F TL + +A +
Sbjct: 27 DKNVAIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAXKKA- 85
Query: 64 SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTI 123
L Q + L + +++ + + +S K + + R+ L L L + T+
Sbjct: 86 GLLQTYYDL-ALPXGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTV 144
Query: 124 RYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRG 183
+ K+V +E + + ++I +G S V K F +++
Sbjct: 145 IWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKVRK--------FVTDTEVEE 196
Query: 184 CTDFKLRHGLE------PKFQQF-----LGKGFRYGFL---PCNDQTVYWFFNW-CPS-- 226
F ++ + P F Q L + L P N+ +++ ++ P
Sbjct: 197 TGTFNIQADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNNNGALHFGISFKTPDEW 256
Query: 227 -NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNIS 285
NQ + N + F+L + D E+ K ++ T V +P E W +
Sbjct: 257 KNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTT---LSFVGLATRIFPLEKPWKSKR 313
Query: 286 KGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKD-------KAG 338
+ GDA H P GQG + L D +IL+ +A+ K+
Sbjct: 314 PLPITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQXFIYGK 373
Query: 339 EDKEEFKRNEI 349
E +EE +NEI
Sbjct: 374 EAQEESTQNEI 384
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 68/190 (35%), Gaps = 17/190 (8%)
Query: 4 DEDIVIVGAGIAGLTTSLALHRLGIXXXXXXXXXXXXXTGFAITLWTNAWRALDAVGISD 63
D +++VGAG AGL + L G+ + D GI
Sbjct: 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILP 71
Query: 64 SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLME-ALER--ELPS 120
+ QG V + K +S S+L E AL R EL
Sbjct: 72 AFGPVETSTQGHFGGRPVDFGVLEGAHYGVKAV-----PQSTTESVLEEWALGRGAELLR 126
Query: 121 GTIRYSSKVVSVEESGLFKLVNLADGA-VFKTKVLIGCDGVNSVVAKWLGFKKPAFAGR- 178
G ++ + ++ E + V DG T+ ++GCDG S V K GF P +
Sbjct: 127 G---HTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASR 183
Query: 179 ----SDIRGC 184
+DIRGC
Sbjct: 184 EMFLADIRGC 193
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLME 112
++ S+S Q AS IS+K GN GG R R L E
Sbjct: 782 IIQYSLSGQEASAISWKLTGNLGGENYRDTVRGPLNE 818
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 7 IVIVGAGIAGLTTSLALHRLGI 28
++I+GAGIAGL + LH+ GI
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGI 32
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 7 IVIVGAGIAGLTTSLALHRLGI 28
++I+GAGIAGL + LH+ GI
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGI 32
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 7 IVIVGAGIAGLTTSLALHRLGI 28
++I+GAGIAGL + LH+ GI
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGI 32
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 7 IVIVGAGIAGLTTSLALHRLGI 28
++I+GAGIAGL + LH+ GI
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGI 32
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 7 IVIVGAGIAGLTTSLALHRLGI 28
++I+GAGIAGL + LH+ GI
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGI 32
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 4 DEDIVIVGAGIAGLTTSLALHRLGI 28
D D+VIVGAG +GLT + L + G+
Sbjct: 7 DRDVVIVGAGPSGLTAARELKKAGL 31
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 6 DIVIVGAGIAGLTTSLALHRLGI 28
D+ IVGAGI+GL + AL + G+
Sbjct: 7 DVAIVGAGISGLAAATALRKAGL 29
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 3 EDEDIVIVGAGIAGLTTSLALHRL 26
E+ D+VIVGAG AGL+ + L +L
Sbjct: 34 EEADVVIVGAGPAGLSAATRLKQL 57
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 327 EKPSGVTKDKAGEDKEEFKRNEIGLKRY 354
EKP G+T+ K GE+ E N GL RY
Sbjct: 380 EKPVGLTQVKIGEEYEVVITNYAGLYRY 407
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 48 LWTNAWRAL--DAVGISD--SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR 103
LW + A+ D VG ++ SL+ Q I+ G+ V+ VS A+ SF+ RGG
Sbjct: 437 LWQDPVPAVSHDLVGEAEIASLKSQ-IRASGLTVSQLVSTAWAAASSFRGSDKRGGANGG 495
Query: 104 SVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAV---FKTKVLIGCDGV 160
++ + E P G +R KV+ E + A G + F V++G
Sbjct: 496 RIRLQPQV-GWEVNDPDGDLR---KVIRTLEEIQESFNSAAPGNIKVSFADLVVLGGCAA 551
Query: 161 NSVVAKWLGFK--KPAFAGRSDI-RGCTDFKLRHGLEPK---FQQFLGKG 204
AK G P GR+D + TD + LEPK F+ +LGKG
Sbjct: 552 IEKAAKAAGHNITVPFTPGRTDASQEQTDVESFAVLEPKADGFRNYLGKG 601
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 48 LWTNAWRAL--DAVGISD--SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR 103
LW + A+ D VG ++ SL+ Q I+ G+ V+ VS A+ SF+ RGG
Sbjct: 437 LWQDPVPAVSHDLVGEAEIASLKSQ-IRASGLTVSQLVSTAWAAASSFRGSDKRGGANGG 495
Query: 104 SVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAV---FKTKVLIGCDGV 160
++ + E P G +R KV+ E + A G + F V++G
Sbjct: 496 RIRLQPQV-GWEVNDPDGDLR---KVIRTLEEIQESFNSAAPGNIKVSFADLVVLGGCAA 551
Query: 161 NSVVAKWLGFK--KPAFAGRSDI-RGCTDFKLRHGLEPK---FQQFLGKG 204
AK G P GR+D + TD + LEPK F+ +LGKG
Sbjct: 552 IEKAAKAAGHNITVPFTPGRTDASQEQTDVESFAVLEPKADGFRNYLGKG 601
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 48 LWTNAWRAL--DAVGISD--SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR 103
LW + A+ D VG ++ SL+ Q I+ G+ V+ VS A+ SF+ RGG
Sbjct: 440 LWQDPVPAVSHDLVGEAEIASLKSQ-IRASGLTVSQLVSTAWAAASSFRGSDKRGGANGG 498
Query: 104 SVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAV---FKTKVLIGCDGV 160
++ + E P G +R KV+ E + A G + F V++G
Sbjct: 499 RIRLQPQV-GWEVNDPDGDLR---KVIRTLEEIQESFNSAAPGNIKVSFADLVVLGGCAA 554
Query: 161 NSVVAKWLGFK--KPAFAGRSDI-RGCTDFKLRHGLEPK---FQQFLGKG 204
AK G P GR+D + TD + LEPK F+ +LGKG
Sbjct: 555 IEKAAKAAGHNITVPFTPGRTDASQEQTDVESFAVLEPKADGFRNYLGKG 604
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,110,950
Number of Sequences: 62578
Number of extensions: 505523
Number of successful extensions: 1326
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 63
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)