Query 015331
Match_columns 409
No_of_seqs 227 out of 2228
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06753 hypothetical protein; 100.0 1.1E-45 2.4E-50 349.8 40.0 362 5-401 1-367 (373)
2 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.3E-45 2.8E-50 349.4 34.7 356 4-390 2-368 (387)
3 KOG2614 Kynurenine 3-monooxyge 100.0 3.2E-46 6.9E-51 333.3 27.8 398 4-406 2-411 (420)
4 PRK06475 salicylate hydroxylas 100.0 8.2E-45 1.8E-49 346.1 37.7 369 5-401 3-388 (400)
5 PRK07588 hypothetical protein; 100.0 5.8E-45 1.3E-49 346.6 36.4 358 5-391 1-368 (391)
6 PRK08163 salicylate hydroxylas 100.0 1.1E-44 2.3E-49 345.8 38.1 377 1-404 1-387 (396)
7 PRK06847 hypothetical protein; 100.0 2.2E-43 4.7E-48 334.4 38.6 360 1-391 1-373 (375)
8 PRK06617 2-octaprenyl-6-methox 100.0 2.9E-44 6.3E-49 339.1 31.6 351 5-398 2-364 (374)
9 PRK08013 oxidoreductase; Provi 100.0 3.6E-44 7.7E-49 341.5 32.2 360 3-392 2-377 (400)
10 PRK08850 2-octaprenyl-6-methox 100.0 4.3E-44 9.4E-49 341.9 32.1 366 1-396 1-381 (405)
11 PRK05868 hypothetical protein; 100.0 3E-43 6.5E-48 331.0 36.8 354 5-387 2-367 (372)
12 TIGR03219 salicylate_mono sali 100.0 2E-43 4.4E-48 338.2 36.0 344 5-374 1-371 (414)
13 PRK06183 mhpA 3-(3-hydroxyphen 100.0 6.5E-43 1.4E-47 344.4 36.7 355 4-392 10-378 (538)
14 TIGR01989 COQ6 Ubiquinone bios 100.0 3.3E-43 7.1E-48 338.0 32.6 370 5-398 1-434 (437)
15 PRK07333 2-octaprenyl-6-methox 100.0 5.6E-43 1.2E-47 334.8 32.8 376 5-407 2-395 (403)
16 PRK07364 2-octaprenyl-6-methox 100.0 4.2E-43 9.1E-48 336.9 31.2 360 3-392 17-389 (415)
17 PRK05714 2-octaprenyl-3-methyl 100.0 6.1E-43 1.3E-47 334.3 31.3 363 4-396 2-384 (405)
18 PLN02927 antheraxanthin epoxid 100.0 8.8E-42 1.9E-46 333.2 38.5 354 3-373 80-443 (668)
19 PRK07045 putative monooxygenas 100.0 6.9E-42 1.5E-46 325.2 36.7 358 1-387 1-373 (388)
20 PRK08849 2-octaprenyl-3-methyl 100.0 1.7E-42 3.8E-47 328.3 32.5 361 1-399 1-376 (384)
21 PRK08773 2-octaprenyl-3-methyl 100.0 1.5E-42 3.2E-47 330.2 31.5 367 3-399 5-384 (392)
22 PRK07494 2-octaprenyl-6-methox 100.0 1.1E-42 2.3E-47 331.0 30.1 363 2-397 5-377 (388)
23 PRK09126 hypothetical protein; 100.0 1E-42 2.2E-47 331.7 29.9 364 1-395 1-378 (392)
24 PRK07538 hypothetical protein; 100.0 9.3E-42 2E-46 326.5 36.5 340 5-374 1-364 (413)
25 PRK06185 hypothetical protein; 100.0 7.2E-42 1.6E-46 327.4 33.6 363 2-395 4-382 (407)
26 PRK08244 hypothetical protein; 100.0 3.1E-41 6.8E-46 329.7 36.5 347 4-387 2-358 (493)
27 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.1E-41 2.4E-46 324.2 30.8 357 6-392 1-371 (385)
28 TIGR01984 UbiH 2-polyprenyl-6- 100.0 9.4E-42 2E-46 324.1 29.2 356 6-394 1-370 (382)
29 PRK07236 hypothetical protein; 100.0 1.3E-40 2.9E-45 315.9 36.7 335 3-374 5-373 (386)
30 PRK06184 hypothetical protein; 100.0 3.4E-41 7.3E-46 330.0 33.6 337 3-374 2-350 (502)
31 PRK06834 hypothetical protein; 100.0 1.2E-40 2.7E-45 322.3 36.2 345 1-390 1-354 (488)
32 PRK08020 ubiF 2-octaprenyl-3-m 100.0 5.7E-41 1.2E-45 319.5 32.7 367 1-399 1-383 (391)
33 PRK08243 4-hydroxybenzoate 3-m 100.0 1.4E-40 3E-45 316.2 35.1 357 4-396 2-377 (392)
34 PRK07190 hypothetical protein; 100.0 1.6E-40 3.5E-45 321.1 34.8 338 1-374 1-345 (487)
35 PF01494 FAD_binding_3: FAD bi 100.0 9.3E-42 2E-46 321.3 24.4 337 4-369 1-356 (356)
36 PRK08294 phenol 2-monooxygenas 100.0 2.2E-40 4.9E-45 328.8 35.0 350 1-374 29-410 (634)
37 PRK08132 FAD-dependent oxidore 100.0 9.3E-40 2E-44 322.9 39.1 354 3-390 22-389 (547)
38 PRK06996 hypothetical protein; 100.0 9E-41 2E-45 317.9 29.6 356 3-397 10-385 (398)
39 PTZ00367 squalene epoxidase; P 100.0 1.3E-39 2.9E-44 316.8 37.6 359 3-391 32-435 (567)
40 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1E-39 2.3E-44 309.2 35.6 358 4-397 2-378 (390)
41 PLN02985 squalene monooxygenas 100.0 2.1E-39 4.6E-44 314.3 38.2 361 3-391 42-421 (514)
42 PRK07608 ubiquinone biosynthes 100.0 2E-40 4.4E-45 315.6 30.5 359 3-394 4-376 (388)
43 PRK05732 2-octaprenyl-6-methox 100.0 3.9E-40 8.5E-45 314.5 30.9 360 3-392 2-377 (395)
44 PRK06126 hypothetical protein; 100.0 3E-39 6.4E-44 319.6 34.4 338 3-373 6-372 (545)
45 PRK11445 putative oxidoreducta 100.0 2E-32 4.4E-37 255.9 30.9 328 5-389 2-342 (351)
46 TIGR02032 GG-red-SF geranylger 100.0 5.9E-33 1.3E-37 254.6 26.3 288 5-321 1-295 (295)
47 TIGR02023 BchP-ChlP geranylger 100.0 8.8E-32 1.9E-36 255.4 32.5 312 5-369 1-328 (388)
48 PLN00093 geranylgeranyl diphos 100.0 1.6E-31 3.5E-36 255.5 33.9 320 3-369 38-377 (450)
49 PRK08255 salicylyl-CoA 5-hydro 100.0 1.7E-31 3.7E-36 271.5 26.1 320 5-374 1-337 (765)
50 TIGR02028 ChlP geranylgeranyl 100.0 1.4E-30 3.1E-35 246.9 30.1 318 5-369 1-338 (398)
51 COG0644 FixC Dehydrogenases (f 100.0 3E-30 6.5E-35 244.9 30.2 322 3-369 2-332 (396)
52 KOG1298 Squalene monooxygenase 100.0 5.2E-29 1.1E-33 219.1 26.9 362 3-391 44-421 (509)
53 PRK10015 oxidoreductase; Provi 100.0 9.9E-29 2.2E-33 236.0 31.3 331 1-361 1-355 (429)
54 PRK10157 putative oxidoreducta 100.0 2E-27 4.4E-32 227.3 31.5 328 1-362 1-356 (428)
55 TIGR01790 carotene-cycl lycope 100.0 2.3E-27 5E-32 225.8 29.8 304 6-364 1-321 (388)
56 KOG3855 Monooxygenase involved 100.0 9.2E-29 2E-33 219.8 15.4 361 4-388 36-461 (481)
57 PLN02697 lycopene epsilon cycl 99.9 3.2E-25 6.9E-30 214.0 30.8 314 4-363 108-441 (529)
58 PLN02463 lycopene beta cyclase 99.9 5.5E-25 1.2E-29 209.4 31.7 286 4-327 28-334 (447)
59 TIGR01789 lycopene_cycl lycope 99.9 4.4E-25 9.5E-30 206.7 25.3 303 6-368 1-313 (370)
60 PF04820 Trp_halogenase: Trypt 99.9 3.3E-25 7.2E-30 212.3 22.2 319 6-369 1-378 (454)
61 PF05834 Lycopene_cycl: Lycope 99.9 1.6E-22 3.5E-27 190.3 27.7 277 6-323 1-290 (374)
62 PF08491 SE: Squalene epoxidas 99.8 1.5E-18 3.3E-23 150.4 21.4 219 150-392 1-225 (276)
63 COG2081 Predicted flavoprotein 99.6 9.4E-15 2E-19 131.7 11.9 155 3-172 2-188 (408)
64 PRK11259 solA N-methyltryptoph 99.6 2.7E-13 5.9E-18 128.6 21.5 59 104-163 145-205 (376)
65 PRK04176 ribulose-1,5-biphosph 99.6 6.8E-14 1.5E-18 124.1 14.0 133 4-168 25-179 (257)
66 TIGR00292 thiazole biosynthesi 99.5 1.6E-13 3.5E-18 121.3 15.3 133 4-168 21-176 (254)
67 TIGR01377 soxA_mon sarcosine o 99.5 1.6E-12 3.5E-17 123.5 23.3 69 104-173 141-212 (380)
68 PRK12409 D-amino acid dehydrog 99.5 7.1E-12 1.5E-16 120.3 24.2 67 105-171 194-268 (410)
69 PF01266 DAO: FAD dependent ox 99.5 4.5E-13 9.8E-18 126.1 15.5 69 103-172 142-214 (358)
70 KOG2415 Electron transfer flav 99.5 1E-11 2.2E-16 111.7 23.0 306 3-327 75-424 (621)
71 PRK12266 glpD glycerol-3-phosp 99.5 3E-12 6.6E-17 125.4 21.0 163 1-163 3-217 (508)
72 PRK01747 mnmC bifunctional tRN 99.5 6.9E-12 1.5E-16 127.1 24.2 60 104-163 404-464 (662)
73 PRK13369 glycerol-3-phosphate 99.5 7.9E-12 1.7E-16 122.5 23.3 171 1-171 3-226 (502)
74 COG0579 Predicted dehydrogenas 99.5 4.9E-12 1.1E-16 118.0 19.3 170 3-172 2-222 (429)
75 PF03486 HI0933_like: HI0933-l 99.4 1.1E-12 2.3E-17 123.7 13.3 141 5-162 1-166 (409)
76 PF01946 Thi4: Thi4 family; PD 99.4 2.2E-12 4.7E-17 107.4 12.6 129 4-164 17-167 (230)
77 PRK11728 hydroxyglutarate oxid 99.4 1.8E-11 3.9E-16 116.7 19.6 67 104-171 145-214 (393)
78 TIGR00562 proto_IX_ox protopor 99.4 5E-10 1.1E-14 109.3 29.6 49 114-162 231-279 (462)
79 PRK00711 D-amino acid dehydrog 99.4 3.9E-11 8.4E-16 115.5 21.5 68 104-172 197-268 (416)
80 COG1635 THI4 Ribulose 1,5-bisp 99.4 8.7E-12 1.9E-16 103.0 14.1 133 4-168 30-184 (262)
81 TIGR01373 soxB sarcosine oxida 99.4 1.1E-10 2.4E-15 111.9 24.3 70 104-174 179-253 (407)
82 PRK05192 tRNA uridine 5-carbox 99.4 5.5E-12 1.2E-16 122.6 14.5 151 1-162 1-157 (618)
83 PLN02172 flavin-containing mon 99.4 4.3E-12 9.4E-17 122.1 12.9 156 2-162 8-173 (461)
84 TIGR03329 Phn_aa_oxid putative 99.4 2.4E-11 5.2E-16 118.1 17.9 58 104-163 179-238 (460)
85 PF13738 Pyr_redox_3: Pyridine 99.4 1.1E-12 2.5E-17 113.1 6.6 136 8-163 1-139 (203)
86 PRK11883 protoporphyrinogen ox 99.3 4.6E-10 1E-14 109.2 25.0 54 109-162 222-275 (451)
87 COG0665 DadA Glycine/D-amino a 99.3 1.9E-10 4E-15 109.7 21.7 65 104-169 152-220 (387)
88 COG3380 Predicted NAD/FAD-depe 99.3 3E-11 6.5E-16 102.9 13.3 137 6-160 3-158 (331)
89 PRK07233 hypothetical protein; 99.3 8.1E-10 1.7E-14 107.0 25.3 53 110-162 200-254 (434)
90 PRK12416 protoporphyrinogen ox 99.3 6.1E-10 1.3E-14 108.6 23.8 59 109-168 227-285 (463)
91 KOG2820 FAD-dependent oxidored 99.3 6.1E-11 1.3E-15 104.2 14.8 173 1-173 4-225 (399)
92 KOG1399 Flavin-containing mono 99.3 2.7E-11 5.8E-16 114.6 13.0 136 3-162 5-153 (448)
93 PF01134 GIDA: Glucose inhibit 99.3 3.1E-11 6.7E-16 111.4 11.7 144 6-160 1-150 (392)
94 PRK05257 malate:quinone oxidor 99.3 7.6E-11 1.7E-15 114.4 14.7 69 104-172 179-257 (494)
95 PRK13339 malate:quinone oxidor 99.3 9E-11 2E-15 113.1 15.0 70 103-172 179-258 (497)
96 TIGR03364 HpnW_proposed FAD de 99.3 3.7E-10 8.1E-15 106.7 18.7 55 104-163 141-198 (365)
97 PLN02612 phytoene desaturase 99.3 3.5E-09 7.6E-14 105.1 25.8 61 4-64 93-169 (567)
98 PLN02464 glycerol-3-phosphate 99.3 5.7E-10 1.2E-14 111.7 20.4 66 104-169 228-304 (627)
99 COG2072 TrkA Predicted flavopr 99.2 1.4E-10 3E-15 111.3 14.3 134 2-162 6-144 (443)
100 PLN02568 polyamine oxidase 99.2 7.8E-10 1.7E-14 108.5 19.7 53 108-160 242-294 (539)
101 COG0578 GlpA Glycerol-3-phosph 99.2 1.4E-09 3.1E-14 103.8 20.1 169 3-171 11-235 (532)
102 TIGR01320 mal_quin_oxido malat 99.2 3.3E-10 7.1E-15 110.0 15.7 70 103-172 173-251 (483)
103 PTZ00383 malate:quinone oxidor 99.2 4.9E-10 1.1E-14 108.5 15.5 66 104-170 207-282 (497)
104 PRK11101 glpA sn-glycerol-3-ph 99.2 3.3E-10 7E-15 112.1 14.0 69 104-172 145-222 (546)
105 TIGR01292 TRX_reduct thioredox 99.2 3.9E-10 8.4E-15 103.5 13.2 110 5-162 1-112 (300)
106 PF12831 FAD_oxidored: FAD dep 99.2 2.8E-11 6E-16 116.2 5.2 148 6-171 1-158 (428)
107 PLN02268 probable polyamine ox 99.2 2.6E-09 5.6E-14 103.4 18.8 41 120-160 210-250 (435)
108 PF00743 FMO-like: Flavin-bind 99.2 1.6E-10 3.5E-15 112.8 10.2 137 5-162 2-150 (531)
109 TIGR02734 crtI_fam phytoene de 99.1 2.1E-08 4.5E-13 98.9 24.5 59 110-168 221-282 (502)
110 COG1232 HemY Protoporphyrinoge 99.1 4E-08 8.6E-13 92.8 24.1 61 6-66 2-79 (444)
111 PLN02576 protoporphyrinogen ox 99.1 2.4E-08 5.3E-13 98.3 23.8 38 3-40 11-49 (496)
112 PLN02676 polyamine oxidase 99.1 7.8E-09 1.7E-13 100.7 20.0 56 107-162 223-286 (487)
113 PRK07208 hypothetical protein; 99.1 1.9E-08 4.1E-13 98.7 22.7 40 1-40 1-40 (479)
114 TIGR00275 flavoprotein, HI0933 99.1 5.5E-10 1.2E-14 106.3 11.3 148 8-171 1-180 (400)
115 COG0492 TrxB Thioredoxin reduc 99.1 1.4E-09 3.1E-14 98.4 12.9 112 3-163 2-116 (305)
116 PLN02487 zeta-carotene desatur 99.1 5.9E-08 1.3E-12 95.5 24.9 63 4-66 75-153 (569)
117 COG1231 Monoamine oxidase [Ami 99.1 1.4E-07 3E-12 87.4 25.5 200 120-326 220-448 (450)
118 TIGR02730 carot_isom carotene 99.1 4.1E-08 8.8E-13 96.5 22.7 62 108-169 229-293 (493)
119 PLN02661 Putative thiazole syn 99.1 2.8E-09 6.1E-14 97.0 13.2 128 4-163 92-245 (357)
120 PRK15317 alkyl hydroperoxide r 99.0 3.1E-09 6.7E-14 104.7 14.3 110 4-162 211-322 (517)
121 PRK08274 tricarballylate dehyd 99.0 2.2E-09 4.7E-14 104.8 13.0 38 1-38 1-38 (466)
122 TIGR03143 AhpF_homolog putativ 99.0 2.2E-09 4.8E-14 106.5 12.9 113 1-163 1-115 (555)
123 TIGR02732 zeta_caro_desat caro 99.0 3.4E-08 7.3E-13 96.1 20.7 60 6-65 1-76 (474)
124 PLN02976 amine oxidase 99.0 1.4E-07 3.1E-12 98.7 25.4 36 4-39 693-728 (1713)
125 TIGR02731 phytoene_desat phyto 99.0 3.3E-08 7.2E-13 96.2 20.0 59 6-64 1-75 (453)
126 PLN02529 lysine-specific histo 99.0 4.5E-08 9.7E-13 98.5 21.1 36 4-39 160-195 (738)
127 TIGR00136 gidA glucose-inhibit 99.0 5.1E-09 1.1E-13 102.0 13.7 147 5-162 1-154 (617)
128 TIGR03140 AhpF alkyl hydropero 99.0 5.5E-09 1.2E-13 102.8 13.9 111 3-162 211-323 (515)
129 PF06039 Mqo: Malate:quinone o 99.0 7.7E-09 1.7E-13 95.9 13.6 73 104-176 177-259 (488)
130 PF13454 NAD_binding_9: FAD-NA 99.0 7.6E-09 1.6E-13 84.9 12.2 140 8-160 1-155 (156)
131 PRK06481 fumarate reductase fl 99.0 1.3E-08 2.8E-13 100.0 16.0 38 3-40 60-97 (506)
132 KOG2853 Possible oxidoreductas 99.0 1.3E-07 2.9E-12 83.5 19.9 37 4-40 86-126 (509)
133 PLN02328 lysine-specific histo 99.0 5.3E-08 1.2E-12 98.5 20.1 36 4-39 238-273 (808)
134 TIGR01813 flavo_cyto_c flavocy 99.0 1.2E-08 2.5E-13 98.9 14.4 34 6-39 1-35 (439)
135 PRK05976 dihydrolipoamide dehy 98.9 4E-09 8.6E-14 103.0 10.6 36 1-36 1-36 (472)
136 PRK06467 dihydrolipoamide dehy 98.9 7.6E-09 1.6E-13 100.8 11.5 39 1-39 1-39 (471)
137 PRK06175 L-aspartate oxidase; 98.9 3.3E-08 7.1E-13 95.1 15.5 38 1-39 1-38 (433)
138 PLN03000 amine oxidase 98.9 4.3E-07 9.3E-12 92.1 23.7 36 4-39 184-219 (881)
139 KOG0685 Flavin-containing amin 98.9 1.2E-07 2.5E-12 87.9 17.6 38 3-40 20-58 (498)
140 PRK05335 tRNA (uracil-5-)-meth 98.9 1E-08 2.2E-13 95.8 10.5 124 5-162 3-138 (436)
141 KOG2844 Dimethylglycine dehydr 98.9 7.6E-08 1.6E-12 92.1 16.2 84 104-188 183-270 (856)
142 PRK06370 mercuric reductase; V 98.9 9.1E-09 2E-13 100.3 10.5 37 1-37 2-38 (463)
143 PRK10262 thioredoxin reductase 98.9 2.9E-08 6.2E-13 92.0 13.2 112 2-162 4-117 (321)
144 PRK07804 L-aspartate oxidase; 98.9 2.4E-08 5.2E-13 98.8 13.1 37 3-39 15-51 (541)
145 TIGR01812 sdhA_frdA_Gneg succi 98.9 4.5E-08 9.7E-13 97.8 14.9 34 6-39 1-34 (566)
146 PRK09897 hypothetical protein; 98.9 1.1E-08 2.5E-13 99.6 10.2 143 5-161 2-165 (534)
147 PRK06115 dihydrolipoamide dehy 98.9 1E-08 2.2E-13 99.8 9.8 37 1-38 1-37 (466)
148 PRK09231 fumarate reductase fl 98.9 4.7E-08 1E-12 97.4 14.5 57 108-164 133-198 (582)
149 PRK08401 L-aspartate oxidase; 98.9 3.7E-08 8E-13 95.8 13.4 34 5-38 2-35 (466)
150 TIGR00551 nadB L-aspartate oxi 98.8 5.6E-08 1.2E-12 95.2 14.1 57 108-164 128-191 (488)
151 PRK06069 sdhA succinate dehydr 98.8 7.5E-08 1.6E-12 96.2 15.2 39 2-40 3-44 (577)
152 PRK12834 putative FAD-binding 98.8 2.9E-08 6.2E-13 98.6 11.9 37 1-37 1-37 (549)
153 PRK06854 adenylylsulfate reduc 98.8 1E-07 2.2E-12 95.5 15.8 150 4-163 11-196 (608)
154 PF00890 FAD_binding_2: FAD bi 98.8 6E-08 1.3E-12 93.4 13.7 57 107-163 140-204 (417)
155 PRK06116 glutathione reductase 98.8 4.2E-08 9.2E-13 95.3 12.5 36 1-36 1-36 (450)
156 PRK05945 sdhA succinate dehydr 98.8 8.3E-08 1.8E-12 95.8 14.7 37 3-39 2-40 (575)
157 PRK07573 sdhA succinate dehydr 98.8 7.3E-08 1.6E-12 96.9 14.4 36 4-39 35-70 (640)
158 PRK07121 hypothetical protein; 98.8 1.5E-07 3.4E-12 92.3 16.2 37 3-39 19-55 (492)
159 PRK08010 pyridine nucleotide-d 98.8 5.7E-08 1.2E-12 94.1 12.9 36 2-37 1-36 (441)
160 PF00070 Pyr_redox: Pyridine n 98.8 1.5E-07 3.3E-12 67.6 11.8 80 6-146 1-80 (80)
161 PRK14694 putative mercuric red 98.8 1.5E-08 3.2E-13 98.9 8.3 35 3-37 5-39 (468)
162 TIGR01176 fum_red_Fp fumarate 98.8 1.4E-07 3.1E-12 93.8 15.4 57 108-164 132-197 (580)
163 PRK05249 soluble pyridine nucl 98.8 4E-08 8.6E-13 95.9 11.1 39 1-39 1-40 (461)
164 PTZ00363 rab-GDP dissociation 98.8 1.2E-07 2.6E-12 90.6 14.0 41 1-41 1-41 (443)
165 TIGR01424 gluta_reduc_2 glutat 98.8 2E-08 4.4E-13 97.3 8.8 33 4-36 2-34 (446)
166 PF13450 NAD_binding_8: NAD(P) 98.8 1.6E-08 3.4E-13 69.9 5.8 34 9-42 1-34 (68)
167 TIGR01350 lipoamide_DH dihydro 98.8 3.7E-07 8.1E-12 89.1 17.7 46 120-165 225-272 (461)
168 PRK06327 dihydrolipoamide dehy 98.8 4.8E-08 1E-12 95.4 11.1 35 1-35 1-35 (475)
169 PF07992 Pyr_redox_2: Pyridine 98.8 1E-08 2.3E-13 88.1 5.5 113 6-163 1-123 (201)
170 TIGR01421 gluta_reduc_1 glutat 98.7 4.4E-08 9.6E-13 94.9 10.1 35 3-37 1-35 (450)
171 PRK06416 dihydrolipoamide dehy 98.7 8.3E-08 1.8E-12 93.6 12.0 35 3-37 3-37 (462)
172 PRK07818 dihydrolipoamide dehy 98.7 2E-08 4.3E-13 97.9 7.2 37 1-37 1-37 (466)
173 COG1249 Lpd Pyruvate/2-oxoglut 98.7 3.4E-08 7.3E-13 94.2 8.1 38 1-38 1-38 (454)
174 PRK07803 sdhA succinate dehydr 98.7 3E-07 6.5E-12 92.4 14.9 36 4-39 8-43 (626)
175 PRK08071 L-aspartate oxidase; 98.7 1.9E-07 4.2E-12 91.7 13.2 36 3-39 2-37 (510)
176 PRK07843 3-ketosteroid-delta-1 98.7 8.6E-07 1.9E-11 88.1 17.8 37 3-39 6-42 (557)
177 PRK06452 sdhA succinate dehydr 98.7 3.3E-07 7.2E-12 91.2 14.8 36 3-38 4-39 (566)
178 PRK07251 pyridine nucleotide-d 98.7 7.6E-08 1.6E-12 93.2 9.6 37 2-38 1-37 (438)
179 PRK06263 sdhA succinate dehydr 98.7 3.3E-07 7.1E-12 91.0 14.2 34 4-38 7-40 (543)
180 PLN02507 glutathione reductase 98.7 1.8E-07 3.9E-12 91.7 11.6 32 4-35 25-56 (499)
181 PRK13748 putative mercuric red 98.7 2.8E-07 6.1E-12 92.2 13.1 34 3-36 97-130 (561)
182 PRK06134 putative FAD-binding 98.7 5.5E-07 1.2E-11 90.0 15.0 37 3-39 11-47 (581)
183 PRK08626 fumarate reductase fl 98.6 4.5E-07 9.9E-12 91.4 14.0 37 3-39 4-40 (657)
184 PRK12842 putative succinate de 98.6 1.1E-07 2.4E-12 95.0 9.5 37 3-39 8-44 (574)
185 PRK09078 sdhA succinate dehydr 98.6 6.2E-07 1.3E-11 89.8 14.2 35 4-38 12-46 (598)
186 COG0445 GidA Flavin-dependent 98.6 4.6E-08 9.9E-13 92.0 5.6 150 1-161 1-157 (621)
187 PRK08275 putative oxidoreducta 98.6 5.9E-07 1.3E-11 89.3 13.9 36 4-39 9-46 (554)
188 PTZ00139 Succinate dehydrogena 98.6 6.6E-07 1.4E-11 89.8 14.2 36 4-39 29-64 (617)
189 PRK08205 sdhA succinate dehydr 98.6 7.2E-07 1.6E-11 89.2 14.4 37 1-38 2-38 (583)
190 PF01593 Amino_oxidase: Flavin 98.6 1.5E-07 3.3E-12 91.0 9.3 45 120-164 223-267 (450)
191 PLN02815 L-aspartate oxidase 98.6 7.8E-07 1.7E-11 88.5 13.7 35 4-39 29-63 (594)
192 PLN00128 Succinate dehydrogena 98.6 8.1E-07 1.8E-11 89.2 13.7 36 4-39 50-85 (635)
193 PRK08958 sdhA succinate dehydr 98.6 1.3E-06 2.9E-11 87.2 14.7 37 3-39 6-42 (588)
194 TIGR00137 gid_trmFO tRNA:m(5)U 98.6 4.7E-07 1E-11 85.4 10.6 35 5-39 1-35 (433)
195 PRK09564 coenzyme A disulfide 98.6 7.3E-07 1.6E-11 86.6 12.4 110 6-163 2-116 (444)
196 PRK12837 3-ketosteroid-delta-1 98.6 2.2E-06 4.7E-11 84.5 15.7 36 3-39 6-41 (513)
197 PTZ00058 glutathione reductase 98.5 2.3E-07 4.9E-12 91.6 8.7 35 3-37 47-81 (561)
198 PRK07057 sdhA succinate dehydr 98.5 1.1E-06 2.5E-11 87.8 13.7 35 4-38 12-46 (591)
199 PRK07512 L-aspartate oxidase; 98.5 6.9E-07 1.5E-11 87.9 11.9 34 3-38 8-41 (513)
200 PRK08641 sdhA succinate dehydr 98.5 1.6E-06 3.5E-11 86.7 14.7 37 3-39 2-38 (589)
201 TIGR02053 MerA mercuric reduct 98.5 2.7E-07 5.9E-12 90.0 8.9 33 5-37 1-33 (463)
202 PRK14727 putative mercuric red 98.5 3.8E-07 8.2E-12 89.2 9.9 37 3-39 15-51 (479)
203 KOG2665 Predicted FAD-dependen 98.5 4.7E-07 1E-11 79.3 9.1 166 3-171 47-267 (453)
204 PRK12844 3-ketosteroid-delta-1 98.5 4E-06 8.7E-11 83.3 17.0 37 3-39 5-41 (557)
205 PRK09077 L-aspartate oxidase; 98.5 1.4E-06 3.1E-11 86.2 13.7 36 3-39 7-42 (536)
206 PRK04965 NADH:flavorubredoxin 98.5 2.3E-06 5E-11 81.2 14.6 107 5-171 142-250 (377)
207 TIGR03197 MnmC_Cterm tRNA U-34 98.5 6.1E-06 1.3E-10 78.5 17.4 61 103-163 130-191 (381)
208 KOG2852 Possible oxidoreductas 98.5 4.5E-06 9.7E-11 72.4 14.5 157 3-163 9-209 (380)
209 PRK13512 coenzyme A disulfide 98.5 1.1E-06 2.3E-11 85.1 12.1 111 6-163 3-118 (438)
210 KOG0042 Glycerol-3-phosphate d 98.5 1.8E-07 3.9E-12 87.6 6.4 56 3-58 66-122 (680)
211 PRK12839 hypothetical protein; 98.5 3.6E-06 7.8E-11 83.8 15.9 37 3-39 7-43 (572)
212 TIGR01811 sdhA_Bsu succinate d 98.5 2.2E-06 4.7E-11 85.8 14.3 32 7-38 1-32 (603)
213 PRK12779 putative bifunctional 98.5 3.7E-07 8.1E-12 95.2 9.0 35 4-38 306-340 (944)
214 TIGR02485 CobZ_N-term precorri 98.5 6.5E-07 1.4E-11 86.5 10.1 58 108-165 123-186 (432)
215 PRK09754 phenylpropionate diox 98.5 1.9E-06 4.1E-11 82.3 13.1 110 2-162 1-112 (396)
216 COG2907 Predicted NAD/FAD-bind 98.5 1.1E-06 2.4E-11 78.1 10.0 43 121-163 232-274 (447)
217 PRK06292 dihydrolipoamide dehy 98.5 8.9E-07 1.9E-11 86.4 10.6 34 3-36 2-35 (460)
218 PF13434 K_oxygenase: L-lysine 98.5 1.4E-07 3.1E-12 87.3 4.7 149 4-168 2-165 (341)
219 COG1233 Phytoene dehydrogenase 98.5 2.3E-07 5E-12 90.6 6.1 38 3-40 2-39 (487)
220 TIGR01423 trypano_reduc trypan 98.5 2.1E-06 4.7E-11 83.7 12.8 35 2-36 1-36 (486)
221 PTZ00052 thioredoxin reductase 98.5 8.2E-07 1.8E-11 87.1 9.8 36 1-36 2-37 (499)
222 PRK07395 L-aspartate oxidase; 98.5 2E-06 4.3E-11 85.3 12.4 36 3-39 8-43 (553)
223 PTZ00306 NADH-dependent fumara 98.4 2.8E-07 6E-12 98.8 6.8 37 3-39 408-444 (1167)
224 PRK12835 3-ketosteroid-delta-1 98.4 4E-06 8.8E-11 83.7 14.5 37 3-39 10-46 (584)
225 PRK09853 putative selenate red 98.4 1.1E-06 2.5E-11 90.7 10.7 36 4-39 539-574 (1019)
226 PRK07845 flavoprotein disulfid 98.4 1.1E-06 2.4E-11 85.6 10.0 33 5-37 2-34 (466)
227 PRK12845 3-ketosteroid-delta-1 98.4 9.5E-06 2.1E-10 80.6 16.3 36 3-39 15-50 (564)
228 PRK12843 putative FAD-binding 98.4 5.4E-06 1.2E-10 82.9 14.6 36 4-39 16-51 (578)
229 PRK13977 myosin-cross-reactive 98.4 7.6E-06 1.7E-10 79.6 15.1 37 4-40 22-62 (576)
230 PRK06912 acoL dihydrolipoamide 98.4 1.2E-06 2.7E-11 85.2 9.7 33 6-38 2-34 (458)
231 TIGR01372 soxA sarcosine oxida 98.4 3.3E-06 7.1E-11 89.4 13.2 37 3-39 162-198 (985)
232 COG2509 Uncharacterized FAD-de 98.4 4.6E-06 1E-10 77.1 12.4 54 109-162 174-230 (486)
233 PRK05249 soluble pyridine nucl 98.4 6.4E-06 1.4E-10 80.4 13.9 100 4-164 175-274 (461)
234 TIGR02061 aprA adenosine phosp 98.4 5.4E-06 1.2E-10 82.7 13.3 34 6-39 1-38 (614)
235 PRK06416 dihydrolipoamide dehy 98.4 6.3E-06 1.4E-10 80.5 13.6 99 5-164 173-274 (462)
236 COG4529 Uncharacterized protei 98.4 1.6E-06 3.5E-11 81.1 8.7 147 5-165 2-167 (474)
237 PLN02546 glutathione reductase 98.4 1.5E-06 3.3E-11 85.8 9.1 32 4-35 79-110 (558)
238 PTZ00153 lipoamide dehydrogena 98.4 3E-06 6.5E-11 85.0 11.0 33 4-36 116-148 (659)
239 KOG0029 Amine oxidase [Seconda 98.3 6.6E-07 1.4E-11 86.6 5.9 38 3-40 14-51 (501)
240 PRK09754 phenylpropionate diox 98.3 7.1E-06 1.5E-10 78.4 12.4 98 5-163 145-242 (396)
241 COG0029 NadB Aspartate oxidase 98.3 3.8E-06 8.2E-11 78.6 10.0 149 6-164 9-198 (518)
242 KOG2311 NAD/FAD-utilizing prot 98.3 1.2E-06 2.5E-11 81.0 6.4 148 3-161 27-185 (679)
243 KOG1335 Dihydrolipoamide dehyd 98.3 2.8E-06 6.1E-11 76.5 8.5 39 3-41 38-76 (506)
244 PTZ00318 NADH dehydrogenase-li 98.3 3E-06 6.4E-11 81.6 9.5 36 3-38 9-44 (424)
245 PRK04965 NADH:flavorubredoxin 98.3 6.4E-06 1.4E-10 78.2 11.6 107 5-162 3-111 (377)
246 PRK13800 putative oxidoreducta 98.3 7.2E-06 1.6E-10 86.1 13.0 35 4-38 13-47 (897)
247 KOG2404 Fumarate reductase, fl 98.3 9.3E-06 2E-10 71.6 11.1 35 6-40 11-45 (477)
248 PRK14989 nitrite reductase sub 98.3 5.6E-06 1.2E-10 85.7 11.4 110 1-163 1-114 (847)
249 TIGR01438 TGR thioredoxin and 98.3 3.4E-06 7.3E-11 82.4 9.3 33 4-36 2-34 (484)
250 COG1249 Lpd Pyruvate/2-oxoglut 98.3 1.5E-05 3.3E-10 76.2 13.3 100 4-164 173-274 (454)
251 PRK06116 glutathione reductase 98.3 1.3E-05 2.8E-10 78.0 13.2 99 5-164 168-267 (450)
252 PRK12778 putative bifunctional 98.3 1.8E-06 3.9E-11 89.1 7.5 35 4-38 431-465 (752)
253 PRK07846 mycothione reductase; 98.3 1.5E-05 3.3E-10 77.3 13.3 99 4-164 166-264 (451)
254 PRK07846 mycothione reductase; 98.2 2.3E-06 4.9E-11 83.0 7.1 32 4-37 1-32 (451)
255 COG1053 SdhA Succinate dehydro 98.2 7.1E-06 1.5E-10 80.7 10.2 39 2-40 4-42 (562)
256 COG3349 Uncharacterized conser 98.2 1.6E-06 3.5E-11 81.9 5.3 37 5-41 1-37 (485)
257 TIGR03452 mycothione_red mycot 98.2 3.6E-06 7.7E-11 81.7 7.9 33 3-37 1-33 (452)
258 TIGR03169 Nterm_to_SelD pyridi 98.2 8.2E-06 1.8E-10 77.1 9.9 105 6-163 1-108 (364)
259 PRK07845 flavoprotein disulfid 98.2 1.6E-05 3.4E-10 77.6 11.9 99 5-164 178-276 (466)
260 PLN02507 glutathione reductase 98.2 2.7E-05 5.9E-10 76.4 13.6 99 5-164 204-302 (499)
261 KOG3923 D-aspartate oxidase [A 98.2 4.1E-05 8.9E-10 66.9 12.9 37 3-39 2-45 (342)
262 TIGR01424 gluta_reduc_2 glutat 98.2 2.8E-05 6E-10 75.5 13.4 99 5-164 167-265 (446)
263 TIGR01421 gluta_reduc_1 glutat 98.2 3.1E-05 6.7E-10 75.2 13.2 99 5-164 167-267 (450)
264 TIGR02733 desat_CrtD C-3',4' d 98.2 2.7E-06 6E-11 83.7 5.8 35 5-39 2-36 (492)
265 PRK07251 pyridine nucleotide-d 98.1 4.3E-05 9.4E-10 74.0 13.9 99 4-164 157-255 (438)
266 COG3075 GlpB Anaerobic glycero 98.1 3.1E-06 6.7E-11 74.8 5.0 34 4-37 2-35 (421)
267 PRK07818 dihydrolipoamide dehy 98.1 4.3E-05 9.3E-10 74.7 13.6 99 5-164 173-275 (466)
268 PRK06912 acoL dihydrolipoamide 98.1 4.6E-05 9.9E-10 74.3 13.6 99 5-164 171-270 (458)
269 TIGR00031 UDP-GALP_mutase UDP- 98.1 3.7E-06 8E-11 78.6 5.4 35 5-39 2-36 (377)
270 TIGR02053 MerA mercuric reduct 98.1 4.9E-05 1.1E-09 74.2 13.1 99 5-164 167-268 (463)
271 TIGR03452 mycothione_red mycot 98.1 5.7E-05 1.2E-09 73.4 13.4 98 5-164 170-267 (452)
272 TIGR02374 nitri_red_nirB nitri 98.1 1.5E-05 3.3E-10 82.5 9.7 106 7-163 1-109 (785)
273 PRK05976 dihydrolipoamide dehy 98.1 5.4E-05 1.2E-09 74.1 13.1 99 5-164 181-283 (472)
274 TIGR03315 Se_ygfK putative sel 98.1 4.2E-06 9.2E-11 86.9 5.4 36 4-39 537-572 (1012)
275 PRK06327 dihydrolipoamide dehy 98.1 6.5E-05 1.4E-09 73.5 13.5 99 5-164 184-286 (475)
276 PRK06115 dihydrolipoamide dehy 98.1 8E-05 1.7E-09 72.7 13.7 100 4-164 174-278 (466)
277 PRK06370 mercuric reductase; V 98.0 5.9E-05 1.3E-09 73.6 12.7 99 5-164 172-273 (463)
278 COG1252 Ndh NADH dehydrogenase 98.0 3.6E-05 7.8E-10 72.0 10.0 109 3-163 2-112 (405)
279 PLN02852 ferredoxin-NADP+ redu 98.0 7.2E-06 1.6E-10 79.3 5.4 37 4-40 26-64 (491)
280 PRK12831 putative oxidoreducta 98.0 7.6E-06 1.7E-10 79.5 5.4 36 4-39 140-175 (464)
281 TIGR02374 nitri_red_nirB nitri 98.0 5E-05 1.1E-09 78.6 11.7 99 5-163 141-239 (785)
282 TIGR03385 CoA_CoA_reduc CoA-di 98.0 4.6E-05 9.9E-10 73.7 10.6 97 5-163 138-234 (427)
283 PRK08010 pyridine nucleotide-d 98.0 0.00013 2.8E-09 70.8 13.6 98 5-164 159-256 (441)
284 COG3634 AhpF Alkyl hydroperoxi 98.0 1.4E-05 3E-10 71.2 6.0 109 3-161 210-324 (520)
285 KOG0404 Thioredoxin reductase 98.0 5.2E-05 1.1E-09 63.5 8.9 118 1-162 5-124 (322)
286 PRK06467 dihydrolipoamide dehy 98.0 0.00012 2.5E-09 71.6 13.0 98 5-164 175-276 (471)
287 TIGR01423 trypano_reduc trypan 98.0 0.00013 2.7E-09 71.4 13.0 99 5-164 188-290 (486)
288 TIGR02352 thiamin_ThiO glycine 98.0 0.00044 9.6E-09 64.5 16.3 60 104-164 133-195 (337)
289 COG3486 IucD Lysine/ornithine 98.0 1.5E-05 3.4E-10 72.8 6.1 148 1-164 2-159 (436)
290 PTZ00052 thioredoxin reductase 97.9 0.00014 3E-09 71.6 13.2 98 5-164 183-280 (499)
291 PRK13512 coenzyme A disulfide 97.9 0.00011 2.4E-09 71.1 12.3 94 5-163 149-242 (438)
292 TIGR03377 glycerol3P_GlpA glyc 97.9 0.0013 2.8E-08 65.2 19.9 69 104-172 124-201 (516)
293 COG0562 Glf UDP-galactopyranos 97.9 1.5E-05 3.3E-10 70.4 5.3 36 5-40 2-37 (374)
294 COG1148 HdrA Heterodisulfide r 97.9 1.4E-05 2.9E-10 74.4 5.0 36 5-40 125-160 (622)
295 PRK06567 putative bifunctional 97.9 1.2E-05 2.6E-10 82.5 5.0 34 4-37 383-416 (1028)
296 PTZ00188 adrenodoxin reductase 97.9 1.6E-05 3.4E-10 76.0 5.4 37 4-40 39-76 (506)
297 PRK14989 nitrite reductase sub 97.9 0.00016 3.4E-09 75.2 13.1 106 5-170 146-255 (847)
298 PRK14694 putative mercuric red 97.9 0.00016 3.4E-09 70.7 12.5 97 5-164 179-275 (468)
299 PRK02106 choline dehydrogenase 97.9 1.4E-05 3.1E-10 79.8 5.2 37 1-37 2-39 (560)
300 KOG1276 Protoporphyrinogen oxi 97.9 2.2E-05 4.8E-10 72.0 5.7 64 4-67 11-95 (491)
301 TIGR01316 gltA glutamate synth 97.9 1.9E-05 4E-10 76.6 5.5 36 4-39 133-168 (449)
302 PTZ00058 glutathione reductase 97.9 0.0003 6.5E-09 69.8 13.9 100 4-164 237-338 (561)
303 TIGR01438 TGR thioredoxin and 97.9 0.00023 5E-09 69.7 13.0 98 5-164 181-281 (484)
304 PF00732 GMC_oxred_N: GMC oxid 97.9 1.3E-05 2.9E-10 73.3 4.2 34 5-38 1-35 (296)
305 PRK12769 putative oxidoreducta 97.9 1.8E-05 4E-10 80.4 5.4 36 4-39 327-362 (654)
306 PRK12775 putative trifunctiona 97.8 1.8E-05 3.9E-10 83.6 5.4 36 4-39 430-465 (1006)
307 PRK09564 coenzyme A disulfide 97.8 0.00014 3E-09 70.7 11.1 98 5-163 150-247 (444)
308 TIGR02462 pyranose_ox pyranose 97.8 3.1E-05 6.8E-10 75.8 6.5 37 5-41 1-37 (544)
309 PRK14727 putative mercuric red 97.8 0.00021 4.5E-09 70.0 12.1 97 5-164 189-285 (479)
310 PRK13748 putative mercuric red 97.8 0.00028 6.1E-09 70.8 13.1 98 4-164 270-367 (561)
311 PRK12810 gltD glutamate syntha 97.8 2.6E-05 5.7E-10 76.1 5.6 36 4-39 143-178 (471)
312 COG0446 HcaD Uncharacterized N 97.8 0.00019 4.1E-09 68.9 11.5 99 5-163 137-238 (415)
313 PRK05329 anaerobic glycerol-3- 97.8 2.7E-05 5.9E-10 74.1 5.2 34 4-37 2-35 (422)
314 PRK11749 dihydropyrimidine deh 97.8 3.1E-05 6.6E-10 75.5 5.3 36 4-39 140-175 (457)
315 PRK06292 dihydrolipoamide dehy 97.8 0.00043 9.4E-09 67.6 13.2 99 4-164 169-270 (460)
316 TIGR03378 glycerol3P_GlpB glyc 97.7 3.6E-05 7.8E-10 72.5 5.1 33 5-37 1-33 (419)
317 PRK12814 putative NADPH-depend 97.7 4.7E-05 1E-09 77.2 5.6 36 4-39 193-228 (652)
318 TIGR01318 gltD_gamma_fam gluta 97.7 5.1E-05 1.1E-09 73.9 5.4 36 4-39 141-176 (467)
319 PTZ00318 NADH dehydrogenase-li 97.7 0.00053 1.2E-08 66.1 12.3 92 6-162 175-280 (424)
320 PLN02546 glutathione reductase 97.7 0.00067 1.4E-08 67.3 12.7 100 4-164 252-352 (558)
321 PRK12770 putative glutamate sy 97.6 7.5E-05 1.6E-09 70.1 5.7 37 3-39 17-53 (352)
322 PRK12809 putative oxidoreducta 97.6 6.3E-05 1.4E-09 76.2 5.5 36 4-39 310-345 (639)
323 TIGR01292 TRX_reduct thioredox 97.6 0.00081 1.7E-08 61.5 12.1 92 5-162 142-238 (300)
324 TIGR03140 AhpF alkyl hydropero 97.6 0.00068 1.5E-08 67.1 11.8 92 5-162 353-450 (515)
325 PTZ00153 lipoamide dehydrogena 97.6 0.00097 2.1E-08 67.2 12.7 100 5-164 313-429 (659)
326 COG1252 Ndh NADH dehydrogenase 97.6 0.00049 1.1E-08 64.5 9.7 53 110-168 215-269 (405)
327 COG0493 GltD NADPH-dependent g 97.5 7.9E-05 1.7E-09 71.5 4.3 35 5-39 124-158 (457)
328 KOG2960 Protein involved in th 97.5 3.1E-05 6.8E-10 64.2 1.1 37 5-41 77-115 (328)
329 COG2303 BetA Choline dehydroge 97.5 8.3E-05 1.8E-09 73.6 4.3 37 1-37 4-40 (542)
330 COG1206 Gid NAD(FAD)-utilizing 97.5 0.00013 2.9E-09 64.7 5.0 35 4-38 3-37 (439)
331 PRK12771 putative glutamate sy 97.5 0.00013 2.7E-09 73.1 5.5 36 5-40 138-173 (564)
332 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00013 2.8E-09 71.4 5.3 35 5-39 144-178 (485)
333 COG3573 Predicted oxidoreducta 97.5 0.00019 4.2E-09 63.9 5.3 36 4-39 5-40 (552)
334 PF13434 K_oxygenase: L-lysine 97.5 0.0004 8.7E-09 64.5 7.7 131 4-160 190-339 (341)
335 KOG1800 Ferredoxin/adrenodoxin 97.4 0.00023 4.9E-09 64.5 4.8 36 4-39 20-57 (468)
336 PRK10262 thioredoxin reductase 97.4 0.0015 3.2E-08 60.5 10.4 33 5-37 147-179 (321)
337 PRK13984 putative oxidoreducta 97.3 0.00026 5.6E-09 71.6 5.4 36 4-39 283-318 (604)
338 PRK15317 alkyl hydroperoxide r 97.2 0.0028 6E-08 62.8 11.3 92 5-162 352-449 (517)
339 PLN02785 Protein HOTHEAD 97.2 0.00036 7.8E-09 69.6 5.0 35 3-38 54-88 (587)
340 TIGR01810 betA choline dehydro 97.2 0.00027 5.9E-09 70.3 4.0 32 6-37 1-33 (532)
341 PRK12770 putative glutamate sy 97.2 0.0035 7.5E-08 58.9 10.7 33 5-37 173-206 (352)
342 TIGR03467 HpnE squalene-associ 97.2 0.01 2.2E-07 57.1 14.1 43 120-162 211-254 (419)
343 TIGR03862 flavo_PP4765 unchara 97.1 0.0027 5.9E-08 59.5 9.5 65 106-172 84-162 (376)
344 TIGR03169 Nterm_to_SelD pyridi 97.1 0.0069 1.5E-07 57.2 12.0 47 110-162 197-243 (364)
345 KOG0399 Glutamate synthase [Am 97.1 0.00051 1.1E-08 70.3 4.3 36 5-40 1786-1821(2142)
346 KOG3851 Sulfide:quinone oxidor 97.0 0.00057 1.2E-08 60.6 3.6 36 3-38 38-75 (446)
347 TIGR01316 gltA glutamate synth 97.0 0.0099 2.1E-07 57.8 12.3 33 5-37 273-305 (449)
348 COG0569 TrkA K+ transport syst 97.0 0.0016 3.6E-08 56.6 6.1 58 5-62 1-65 (225)
349 KOG1336 Monodehydroascorbate/f 96.9 0.0059 1.3E-07 57.4 9.4 39 120-160 141-179 (478)
350 PRK11749 dihydropyrimidine deh 96.9 0.011 2.3E-07 57.8 11.6 33 5-37 274-307 (457)
351 PF06100 Strep_67kDa_ant: Stre 96.9 0.018 4E-07 54.9 12.4 36 4-39 2-41 (500)
352 KOG1335 Dihydrolipoamide dehyd 96.9 0.0068 1.5E-07 55.3 9.0 99 4-163 211-315 (506)
353 TIGR01372 soxA sarcosine oxida 96.8 0.0077 1.7E-07 64.3 10.8 96 5-169 318-420 (985)
354 KOG1336 Monodehydroascorbate/f 96.8 0.0074 1.6E-07 56.8 9.0 101 4-164 213-315 (478)
355 PLN02172 flavin-containing mon 96.7 0.0034 7.5E-08 60.9 6.6 34 4-37 204-237 (461)
356 KOG4254 Phytoene desaturase [C 96.7 0.0013 2.8E-08 61.1 3.4 49 120-168 278-327 (561)
357 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.0022 4.7E-08 52.6 4.2 32 6-37 1-32 (157)
358 KOG4716 Thioredoxin reductase 96.6 0.0024 5.1E-08 57.2 4.3 33 3-35 18-50 (503)
359 PF00996 GDI: GDP dissociation 96.6 0.0027 5.9E-08 60.4 4.8 41 1-41 1-41 (438)
360 TIGR03143 AhpF_homolog putativ 96.6 0.022 4.7E-07 57.0 11.4 33 5-37 144-176 (555)
361 PF03721 UDPG_MGDP_dh_N: UDP-g 96.6 0.002 4.2E-08 54.3 3.4 34 5-38 1-34 (185)
362 PRK12831 putative oxidoreducta 96.6 0.034 7.4E-07 54.3 12.5 33 5-37 282-314 (464)
363 PRK12810 gltD glutamate syntha 96.6 0.027 5.9E-07 55.1 11.8 32 5-36 282-314 (471)
364 KOG1346 Programmed cell death 96.5 0.013 2.8E-07 54.1 8.3 51 120-170 407-459 (659)
365 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0039 8.4E-08 52.3 4.2 33 6-38 1-33 (180)
366 KOG1238 Glucose dehydrogenase/ 96.4 0.0035 7.5E-08 61.3 4.3 37 3-39 56-93 (623)
367 PRK07530 3-hydroxybutyryl-CoA 96.3 0.006 1.3E-07 55.7 4.9 38 1-38 1-38 (292)
368 PF00743 FMO-like: Flavin-bind 96.3 0.0083 1.8E-07 59.2 6.2 35 4-38 183-217 (531)
369 PRK01438 murD UDP-N-acetylmura 96.2 0.0066 1.4E-07 59.6 5.2 33 5-37 17-49 (480)
370 KOG0405 Pyridine nucleotide-di 96.2 0.039 8.4E-07 49.9 9.3 34 3-36 19-52 (478)
371 PRK07819 3-hydroxybutyryl-CoA 96.2 0.0068 1.5E-07 55.0 4.8 38 1-38 1-39 (286)
372 PRK02705 murD UDP-N-acetylmura 96.2 0.0057 1.2E-07 59.7 4.7 34 6-39 2-35 (459)
373 PRK12814 putative NADPH-depend 96.1 0.09 1.9E-06 53.7 12.6 33 5-37 324-357 (652)
374 PF02558 ApbA: Ketopantoate re 96.0 0.011 2.4E-07 48.0 4.9 31 7-37 1-31 (151)
375 PRK05708 2-dehydropantoate 2-r 96.0 0.01 2.2E-07 54.4 4.9 34 4-37 2-35 (305)
376 PRK14618 NAD(P)H-dependent gly 96.0 0.01 2.2E-07 55.1 4.9 38 1-38 1-38 (328)
377 PRK06129 3-hydroxyacyl-CoA deh 95.9 0.0091 2E-07 54.9 4.4 34 5-38 3-36 (308)
378 PRK06249 2-dehydropantoate 2-r 95.9 0.012 2.6E-07 54.2 5.1 35 3-37 4-38 (313)
379 PRK12778 putative bifunctional 95.8 0.089 1.9E-06 54.8 11.5 33 5-37 571-604 (752)
380 PRK07066 3-hydroxybutyryl-CoA 95.8 0.015 3.3E-07 53.3 5.1 34 5-38 8-41 (321)
381 PRK14106 murD UDP-N-acetylmura 95.7 0.016 3.4E-07 56.5 5.3 35 3-37 4-38 (450)
382 PRK06130 3-hydroxybutyryl-CoA 95.7 0.016 3.5E-07 53.4 5.1 38 1-38 1-38 (311)
383 TIGR01350 lipoamide_DH dihydro 95.7 0.015 3.2E-07 56.9 5.0 36 4-39 170-205 (461)
384 TIGR02733 desat_CrtD C-3',4' d 95.6 1.1 2.3E-05 44.3 17.9 55 108-162 232-294 (492)
385 PLN02545 3-hydroxybutyryl-CoA 95.6 0.017 3.8E-07 52.7 4.9 38 1-38 1-38 (295)
386 COG1251 NirB NAD(P)H-nitrite r 95.6 0.03 6.5E-07 55.7 6.6 107 5-171 146-254 (793)
387 PRK06719 precorrin-2 dehydroge 95.6 0.023 5E-07 46.4 5.0 31 4-34 13-43 (157)
388 PRK08293 3-hydroxybutyryl-CoA 95.5 0.02 4.3E-07 52.1 4.9 34 5-38 4-37 (287)
389 PF01262 AlaDh_PNT_C: Alanine 95.5 0.023 5.1E-07 47.0 4.9 35 3-37 19-53 (168)
390 PRK06522 2-dehydropantoate 2-r 95.5 0.02 4.3E-07 52.6 4.7 32 6-37 2-33 (304)
391 PRK12921 2-dehydropantoate 2-r 95.4 0.02 4.3E-07 52.6 4.7 30 6-35 2-31 (305)
392 COG0446 HcaD Uncharacterized N 95.4 0.085 1.9E-06 50.5 9.2 42 120-164 67-108 (415)
393 TIGR01470 cysG_Nterm siroheme 95.4 0.028 6E-07 48.2 5.0 34 4-37 9-42 (205)
394 PTZ00082 L-lactate dehydrogena 95.3 0.03 6.6E-07 51.6 5.5 39 1-39 3-42 (321)
395 PRK09260 3-hydroxybutyryl-CoA 95.3 0.021 4.5E-07 52.0 4.4 33 6-38 3-35 (288)
396 PRK11064 wecC UDP-N-acetyl-D-m 95.3 0.022 4.9E-07 54.5 4.7 37 1-38 1-37 (415)
397 PF13241 NAD_binding_7: Putati 95.3 0.015 3.2E-07 43.8 2.8 35 3-37 6-40 (103)
398 PRK05808 3-hydroxybutyryl-CoA 95.2 0.028 6E-07 51.0 4.7 34 5-38 4-37 (282)
399 PRK06035 3-hydroxyacyl-CoA deh 95.2 0.025 5.3E-07 51.6 4.3 34 5-38 4-37 (291)
400 PRK08229 2-dehydropantoate 2-r 95.2 0.028 6.2E-07 52.5 4.9 32 5-36 3-34 (341)
401 PRK06718 precorrin-2 dehydroge 95.2 0.037 8E-07 47.3 5.1 32 4-35 10-41 (202)
402 PF00899 ThiF: ThiF family; I 95.2 0.031 6.7E-07 44.4 4.4 34 4-37 2-36 (135)
403 cd05292 LDH_2 A subgroup of L- 95.1 0.031 6.8E-07 51.3 4.9 33 6-38 2-36 (308)
404 COG1004 Ugd Predicted UDP-gluc 95.1 0.028 6E-07 52.0 4.4 34 5-38 1-34 (414)
405 TIGR02354 thiF_fam2 thiamine b 95.1 0.037 8E-07 47.2 4.9 34 4-37 21-55 (200)
406 PF13478 XdhC_C: XdhC Rossmann 95.1 0.027 5.8E-07 44.7 3.7 32 7-38 1-32 (136)
407 PRK07531 bifunctional 3-hydrox 95.1 0.031 6.7E-07 55.0 5.0 38 1-38 1-38 (495)
408 PRK04148 hypothetical protein; 95.0 0.026 5.6E-07 44.3 3.4 33 5-38 18-50 (134)
409 PF02254 TrkA_N: TrkA-N domain 95.0 0.039 8.5E-07 42.4 4.3 32 7-38 1-32 (116)
410 PRK14619 NAD(P)H-dependent gly 94.9 0.042 9.1E-07 50.5 5.2 37 2-38 2-38 (308)
411 TIGR01318 gltD_gamma_fam gluta 94.9 0.38 8.3E-06 47.1 12.1 34 5-38 283-317 (467)
412 PF00056 Ldh_1_N: lactate/mala 94.9 0.055 1.2E-06 43.3 5.1 34 5-38 1-37 (141)
413 PRK09853 putative selenate red 94.9 0.3 6.6E-06 51.6 11.6 33 5-37 669-703 (1019)
414 TIGR00518 alaDH alanine dehydr 94.8 0.04 8.7E-07 51.9 4.8 34 4-37 167-200 (370)
415 PRK15116 sulfur acceptor prote 94.8 0.05 1.1E-06 48.5 5.1 35 3-37 29-64 (268)
416 TIGR01763 MalateDH_bact malate 94.8 0.049 1.1E-06 49.8 5.2 34 5-38 2-36 (305)
417 PF01488 Shikimate_DH: Shikima 94.7 0.069 1.5E-06 42.4 5.3 34 4-37 12-46 (135)
418 PRK14620 NAD(P)H-dependent gly 94.7 0.044 9.5E-07 50.9 4.8 32 6-37 2-33 (326)
419 PRK09424 pntA NAD(P) transhydr 94.7 0.039 8.4E-07 53.8 4.4 35 4-38 165-199 (509)
420 TIGR03315 Se_ygfK putative sel 94.6 0.38 8.2E-06 51.1 11.7 33 5-37 667-701 (1012)
421 COG0492 TrxB Thioredoxin reduc 94.6 0.46 1E-05 43.4 10.9 36 4-39 143-178 (305)
422 TIGR03026 NDP-sugDHase nucleot 94.6 0.04 8.8E-07 52.9 4.3 33 6-38 2-34 (411)
423 cd00401 AdoHcyase S-adenosyl-L 94.6 0.049 1.1E-06 51.7 4.7 34 5-38 203-236 (413)
424 PRK12769 putative oxidoreducta 94.5 0.43 9.3E-06 48.9 11.8 33 5-37 469-502 (654)
425 PRK07417 arogenate dehydrogena 94.5 0.046 9.9E-07 49.5 4.1 32 6-37 2-33 (279)
426 PRK00094 gpsA NAD(P)H-dependen 94.3 0.061 1.3E-06 49.9 4.6 32 6-37 3-34 (325)
427 cd01080 NAD_bind_m-THF_DH_Cycl 94.2 0.088 1.9E-06 43.4 4.9 33 4-36 44-77 (168)
428 KOG2755 Oxidoreductase [Genera 94.2 0.038 8.3E-07 48.0 2.8 34 6-39 1-36 (334)
429 PRK12475 thiamine/molybdopteri 94.2 0.075 1.6E-06 49.3 5.0 34 4-37 24-58 (338)
430 PF03446 NAD_binding_2: NAD bi 94.2 0.065 1.4E-06 44.2 4.1 34 5-38 2-35 (163)
431 TIGR02964 xanthine_xdhC xanthi 94.2 0.088 1.9E-06 46.5 5.1 36 3-38 99-134 (246)
432 COG1251 NirB NAD(P)H-nitrite r 94.2 0.31 6.7E-06 48.9 9.2 110 4-164 3-115 (793)
433 TIGR03378 glycerol3P_GlpB glyc 94.1 0.21 4.5E-06 47.6 7.8 60 104-163 259-324 (419)
434 TIGR02356 adenyl_thiF thiazole 94.0 0.096 2.1E-06 44.8 5.0 35 3-37 20-55 (202)
435 COG3486 IucD Lysine/ornithine 93.9 0.38 8.2E-06 44.8 8.7 45 119-163 291-341 (436)
436 PLN02353 probable UDP-glucose 93.9 0.079 1.7E-06 51.5 4.6 34 5-38 2-37 (473)
437 COG5044 MRS6 RAB proteins gera 93.8 0.11 2.4E-06 47.5 5.1 37 4-40 6-42 (434)
438 TIGR01915 npdG NADPH-dependent 93.8 0.095 2.1E-06 45.5 4.7 32 6-37 2-34 (219)
439 PRK15057 UDP-glucose 6-dehydro 93.8 0.078 1.7E-06 50.3 4.3 32 6-38 2-33 (388)
440 PRK13984 putative oxidoreducta 93.8 0.72 1.6E-05 46.8 11.5 36 286-327 568-603 (604)
441 PRK05442 malate dehydrogenase; 93.8 0.1 2.2E-06 48.1 4.9 37 1-37 1-45 (326)
442 PRK07688 thiamine/molybdopteri 93.7 0.11 2.3E-06 48.3 5.1 34 4-37 24-58 (339)
443 COG0686 Ald Alanine dehydrogen 93.7 0.066 1.4E-06 47.8 3.4 35 4-38 168-202 (371)
444 TIGR02355 moeB molybdopterin s 93.7 0.11 2.5E-06 45.6 5.0 34 4-37 24-58 (240)
445 PRK06223 malate dehydrogenase; 93.7 0.11 2.3E-06 47.8 5.0 34 5-38 3-37 (307)
446 KOG2304 3-hydroxyacyl-CoA dehy 93.7 0.081 1.8E-06 44.9 3.7 38 1-38 8-45 (298)
447 COG1748 LYS9 Saccharopine dehy 93.7 0.1 2.2E-06 48.8 4.8 34 5-38 2-36 (389)
448 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.6 0.098 2.1E-06 51.4 4.8 36 3-38 4-39 (503)
449 PRK05690 molybdopterin biosynt 93.6 0.12 2.6E-06 45.7 4.9 34 4-37 32-66 (245)
450 TIGR00936 ahcY adenosylhomocys 93.6 0.12 2.6E-06 49.0 5.2 35 4-38 195-229 (406)
451 COG0771 MurD UDP-N-acetylmuram 93.6 0.088 1.9E-06 50.3 4.3 36 4-39 7-42 (448)
452 PRK00066 ldh L-lactate dehydro 93.6 0.14 3E-06 47.1 5.5 36 3-38 5-42 (315)
453 COG1893 ApbA Ketopantoate redu 93.5 0.092 2E-06 48.1 4.2 33 5-37 1-33 (307)
454 PRK08306 dipicolinate synthase 93.5 0.12 2.6E-06 47.1 4.9 35 4-38 152-186 (296)
455 PF10727 Rossmann-like: Rossma 93.4 0.052 1.1E-06 42.4 2.0 32 4-35 10-41 (127)
456 cd05291 HicDH_like L-2-hydroxy 93.3 0.13 2.7E-06 47.3 4.8 33 6-38 2-36 (306)
457 cd01487 E1_ThiF_like E1_ThiF_l 93.3 0.15 3.3E-06 42.5 4.8 32 6-37 1-33 (174)
458 PRK04308 murD UDP-N-acetylmura 93.2 0.15 3.3E-06 49.5 5.5 35 4-38 5-39 (445)
459 PF00670 AdoHcyase_NAD: S-aden 93.2 0.14 3.1E-06 41.5 4.3 34 4-37 23-56 (162)
460 PRK08268 3-hydroxy-acyl-CoA de 93.2 0.13 2.7E-06 50.8 4.9 34 5-38 8-41 (507)
461 PTZ00117 malate dehydrogenase; 93.2 0.16 3.5E-06 46.9 5.2 36 3-38 4-40 (319)
462 PRK08644 thiamine biosynthesis 93.1 0.17 3.7E-06 43.6 5.0 34 4-37 28-62 (212)
463 cd00757 ThiF_MoeB_HesA_family 93.1 0.16 3.4E-06 44.4 4.9 34 4-37 21-55 (228)
464 TIGR00561 pntA NAD(P) transhyd 93.1 0.13 2.9E-06 50.1 4.7 35 4-38 164-198 (511)
465 PRK03803 murD UDP-N-acetylmura 93.1 0.14 3E-06 49.9 5.0 37 1-37 3-39 (448)
466 PRK08328 hypothetical protein; 93.1 0.16 3.5E-06 44.4 4.9 34 4-37 27-61 (231)
467 KOG1346 Programmed cell death 93.1 0.4 8.6E-06 44.7 7.4 134 4-164 178-313 (659)
468 PRK03369 murD UDP-N-acetylmura 93.1 0.13 2.9E-06 50.5 4.8 33 5-37 13-45 (488)
469 PRK02472 murD UDP-N-acetylmura 93.0 0.15 3.2E-06 49.7 5.1 34 4-37 5-38 (447)
470 PRK12549 shikimate 5-dehydroge 93.0 0.16 3.5E-06 46.0 4.9 33 5-37 128-161 (284)
471 cd05293 LDH_1 A subgroup of L- 93.0 0.18 3.8E-06 46.3 5.2 36 3-38 2-39 (312)
472 KOG2495 NADH-dehydrogenase (ub 92.9 0.9 1.9E-05 42.7 9.5 35 3-37 54-88 (491)
473 cd05311 NAD_bind_2_malic_enz N 92.9 0.17 3.7E-06 44.1 4.8 34 4-37 25-61 (226)
474 cd01483 E1_enzyme_family Super 92.9 0.19 4.1E-06 40.3 4.8 32 6-37 1-33 (143)
475 PRK01710 murD UDP-N-acetylmura 92.9 0.15 3.2E-06 49.8 4.9 33 5-37 15-47 (458)
476 cd01075 NAD_bind_Leu_Phe_Val_D 92.9 0.2 4.3E-06 42.8 5.0 32 5-36 29-60 (200)
477 KOG1439 RAB proteins geranylge 92.9 0.058 1.3E-06 49.8 1.8 39 1-39 1-39 (440)
478 PRK07502 cyclohexadienyl dehyd 92.8 0.15 3.2E-06 46.9 4.5 33 5-37 7-41 (307)
479 COG1063 Tdh Threonine dehydrog 92.8 0.14 3.1E-06 48.0 4.4 33 6-38 171-204 (350)
480 TIGR02853 spore_dpaA dipicolin 92.8 0.17 3.6E-06 45.9 4.7 34 4-37 151-184 (287)
481 PRK09496 trkA potassium transp 92.7 0.14 3E-06 49.9 4.5 33 6-38 2-34 (453)
482 cd01492 Aos1_SUMO Ubiquitin ac 92.6 0.2 4.3E-06 42.7 4.7 34 4-37 21-55 (197)
483 PRK04690 murD UDP-N-acetylmura 92.6 0.16 3.6E-06 49.6 4.8 34 4-37 8-41 (468)
484 PRK05476 S-adenosyl-L-homocyst 92.6 0.21 4.4E-06 47.7 5.2 35 4-38 212-246 (425)
485 cd00755 YgdL_like Family of ac 92.6 0.21 4.6E-06 43.6 4.9 35 3-37 10-45 (231)
486 cd01339 LDH-like_MDH L-lactate 92.6 0.16 3.5E-06 46.5 4.4 32 7-38 1-33 (300)
487 PRK00421 murC UDP-N-acetylmura 92.6 0.15 3.2E-06 49.8 4.4 36 3-38 6-42 (461)
488 cd05191 NAD_bind_amino_acid_DH 92.5 0.33 7.2E-06 35.0 5.1 32 4-35 23-55 (86)
489 PLN02695 GDP-D-mannose-3',5'-e 92.4 0.21 4.5E-06 47.3 5.1 36 2-37 19-55 (370)
490 PRK00683 murD UDP-N-acetylmura 92.4 0.18 3.9E-06 48.5 4.7 34 5-38 4-37 (418)
491 PRK11559 garR tartronate semia 92.4 0.19 4.1E-06 45.9 4.6 34 5-38 3-36 (296)
492 cd01485 E1-1_like Ubiquitin ac 92.4 0.23 5E-06 42.3 4.8 34 4-37 19-53 (198)
493 TIGR01505 tartro_sem_red 2-hyd 92.4 0.16 3.4E-06 46.3 4.0 33 6-38 1-33 (291)
494 TIGR03736 PRTRC_ThiF PRTRC sys 92.4 0.22 4.8E-06 43.7 4.7 35 3-37 10-55 (244)
495 PRK05675 sdhA succinate dehydr 92.4 1.5 3.2E-05 44.2 11.2 57 108-164 126-191 (570)
496 cd01078 NAD_bind_H4MPT_DH NADP 92.4 0.25 5.4E-06 42.0 5.0 33 4-36 28-61 (194)
497 PRK11199 tyrA bifunctional cho 92.3 0.2 4.4E-06 47.3 4.8 32 5-36 99-131 (374)
498 PRK11730 fadB multifunctional 92.3 0.15 3.3E-06 52.5 4.2 34 5-38 314-347 (715)
499 PRK06849 hypothetical protein; 92.2 0.23 5.1E-06 47.3 5.2 38 1-38 1-39 (389)
500 PRK08223 hypothetical protein; 92.1 0.25 5.5E-06 44.3 4.9 34 4-37 27-61 (287)
No 1
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=349.77 Aligned_cols=362 Identities=23% Similarity=0.371 Sum_probs=274.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
++|+||||||+|+++|+.|+++|++|+|+||.+.+...++++.+++++++.|+.+|+.+.+...+.+.....+++.. +.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~-g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK-GT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC-CC
Confidence 48999999999999999999999999999999988888899999999999999999999988877777777776543 33
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
......+. .....+.++|..|.+.|.+.+++..++++++|++++.++++++|++.+|+++.+|+||+|||.+|.+
T Consensus 80 ~~~~~~~~-----~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 80 LLNKVKLK-----SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred EEeecccc-----cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 32222221 1223457999999999999988788999999999998888899999999999999999999999999
Q ss_pred HhHhCCCC-CcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHH
Q 015331 165 AKWLGFKK-PAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFV 243 (409)
Q Consensus 165 r~~lg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (409)
|+.++... ..+.+..++.+....... ........++..+..++++|..++..+|.+.+..+....... ....+.+
T Consensus 155 R~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l 230 (373)
T PRK06753 155 RQSVNADSKVRYQGYTCFRGLIDDIDL-KLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYS---SFGKPHL 230 (373)
T ss_pred HHHhCCCCCceEcceEEEEEEeccccc-cCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccc---cccHHHH
Confidence 99987543 334556666554432211 112223344555556889999999888877665332211111 1113556
Q ss_pred HHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHH
Q 015331 244 LSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAE 323 (409)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~ 323 (409)
.+.+..+++.+.++++..........+.....+ .++|..+|++|+|||||.++|+.|||+|+||+||..|++.|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~ 306 (373)
T PRK06753 231 QAYFNHYPNEVREILDKQSETGILHHDIYDLKP----LKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA 306 (373)
T ss_pred HHHHhcCChHHHHHHHhCCcccceeeccccccc----cccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh
Confidence 677778888888888765432222223222222 2367889999999999999999999999999999999999953
Q ss_pred HhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHhhhhhhhhh
Q 015331 324 ASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKIL 399 (409)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~ 399 (409)
...+++|+.|+++|++++..+++.|+..+. ..+....+|+.+|.......+....
T Consensus 307 ---------------------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 365 (373)
T PRK06753 307 ---------------------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMPNALAAGQT 365 (373)
T ss_pred ---------------------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCChhhhhhhh
Confidence 156899999999999999999999988776 6667888999999877655554444
Q ss_pred cc
Q 015331 400 EF 401 (409)
Q Consensus 400 ~~ 401 (409)
.|
T Consensus 366 ~~ 367 (373)
T PRK06753 366 KF 367 (373)
T ss_pred hh
Confidence 33
No 2
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.3e-45 Score=349.39 Aligned_cols=356 Identities=27% Similarity=0.330 Sum_probs=261.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC-CccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.+||+||||||+||++|+.|+++|++|+|||+. ......++++.++++++++|+++|+.+.+.....+......+....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999998 4556677999999999999999999888877666555554444322
Q ss_pred CcccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEc-CCCEEecCEEEEcC
Q 015331 83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLA-DGAVFKTKVLIGCD 158 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~-~g~~~~ad~vV~Ad 158 (409)
. . .+.+...........+.+.+..|.+.|.+.+. +++++++++|+.++.+++.++++++ +|++++||+||+||
T Consensus 82 ~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 82 R-R--LLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred c-e--eEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 2 1 22222222222445568999999999998773 4799999999999999999889988 99999999999999
Q ss_pred CCchHhHhHhCCC-CCc-ccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCCh
Q 015331 159 GVNSVVAKWLGFK-KPA-FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNP 236 (409)
Q Consensus 159 G~~s~vr~~lg~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (409)
|.+|.+|+.+++. ... .+....+......+ .+.......++.+...+.++|++++.....+.............+.
T Consensus 159 G~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T COG0654 159 GANSAVRRAAGIAEFSGRDYGQTALVANVEPE--EPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD 236 (387)
T ss_pred CCchHHHHhcCCCCccCCCCCceEEEEEeecC--CCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCH
Confidence 9999999999933 222 34555545444443 2222333334555556889999965544444444443333344555
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHH
Q 015331 237 DKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGII 316 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~ 316 (409)
+.+.+.+.+.+....+ ............+++.. .....|..+|++|+|||||.++|+.|||+|+|++||..
T Consensus 237 ~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~pl~~-----~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~ 307 (387)
T COG0654 237 EEFLRELQRRLGERDP----LGRVTLVSSRSAFPLSL-----RVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAA 307 (387)
T ss_pred HHHHHHHHHhcCcccc----cceEEEccccccccccc-----hhhhheecCcEEEEeeccccCCCccccchhhhhhhHHH
Confidence 5555566665542222 11111112222333332 34456778999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHH
Q 015331 317 LARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVL 390 (409)
Q Consensus 317 La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~ 390 (409)
|++.|.++.... .+ +.+|+.|+++|++++..++..+..+.. ..++...+|+..+..+
T Consensus 308 La~~L~~~~~~~----------------~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~ 368 (387)
T COG0654 308 LAEALAAAPRPG----------------AD-AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLL 368 (387)
T ss_pred HHHHHHHHhhcC----------------cc-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHhh
Confidence 999999987631 12 899999999999999999999975544 8899999999999975
No 3
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=3.2e-46 Score=333.25 Aligned_cols=398 Identities=37% Similarity=0.556 Sum_probs=304.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
+-+|+|||||++||++|++|+|+|++|+|+|+..+++..+.++.+..+++++|+.+|+.+.+.+.+.+..+.......++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 45899999999999999999999999999999999998899999999999999999999999999998876655555566
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCc------eEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSS------KVVSVEESGLFKLVNLADGAVFKTKVLIGC 157 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~------~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A 157 (409)
.....+.+..... +...+..|..+...|.+.++..++++.. ....++..+....|++.+|.++++|++|+|
T Consensus 82 ~~~~~~~~~~~~~---~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligC 158 (420)
T KOG2614|consen 82 KEVSRILYGEPDE---YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGC 158 (420)
T ss_pred CeeEecccCCchH---HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEc
Confidence 6666665554332 2344666777777888877766777664 445555566667789999999999999999
Q ss_pred CCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChh
Q 015331 158 DGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPD 237 (409)
Q Consensus 158 dG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
||++|.||++++...+.+.+..+++++..++.++++......+.+++.+++..|.....++|+...+..........+++
T Consensus 159 DGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~ 238 (420)
T KOG2614|consen 159 DGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPE 238 (420)
T ss_pred CchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHH
Confidence 99999999999998899999999999988887776644444445565566656655555555542222222222344566
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHH
Q 015331 238 KTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIIL 317 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~L 317 (409)
..++...+.+..++..+.++++....+.+...++..++|++.+..+...++++|+|||||.|.|+.|||+|+|++|+.+|
T Consensus 239 ~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VL 318 (420)
T KOG2614|consen 239 KLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVL 318 (420)
T ss_pred HHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHH
Confidence 77777777777889999999999988888888899999998888888888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhH--HHHHHHHHHHHHh
Q 015331 318 ARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKI--INFLRDKIFSVLL 391 (409)
Q Consensus 318 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~--~~~~r~~~~~~~~ 391 (409)
+++|.++... .|-..+.+.. -..+..-++.++..|..+|+.+...+..-++..+. ..++ ...+|+..+..++
T Consensus 319 a~~L~~~~~d-~s~~~~~~s~-~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~l~~m~~F~d~~ys~~l 396 (420)
T KOG2614|consen 319 AECLDEAIND-VSLAGEEYSR-ENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGPLYLMVSFRDIIYSEAL 396 (420)
T ss_pred HHHHHHhccc-hhccccceec-ccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccccchhhccchhhhhHHHHH
Confidence 9999998763 1111112110 11222338899999999998888877777766655 4444 4456777777777
Q ss_pred hhhhhhhhcccCCcc
Q 015331 392 GRLMMKILEFDCGKL 406 (409)
Q Consensus 392 ~~~~~~~~~~~~~~~ 406 (409)
.+...+.-.+.+|-.
T Consensus 397 ~~~~~~~~~~~~g~~ 411 (420)
T KOG2614|consen 397 ERLGIKKKILNDGSF 411 (420)
T ss_pred HHHHhhhhhhcccch
Confidence 777666666666543
No 4
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=8.2e-45 Score=346.08 Aligned_cols=369 Identities=22% Similarity=0.292 Sum_probs=265.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+||||||+||++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+++.+.+.+.......+.......
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 58999999999999999999999999999999988888899999999999999999999987766554443333221111
Q ss_pred cccccccccc-CCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEc---CCCEEecCEEEEc
Q 015331 85 PASEISFKTK-GNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLA---DGAVFKTKVLIGC 157 (409)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~---~g~~~~ad~vV~A 157 (409)
.......... ..........++|..|.+.|.+.+ ++++++++++|++++.+++.+++++. +++++++|+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA 162 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC 162 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence 1111111110 011122234689999999999876 35789999999999988888887763 3457999999999
Q ss_pred CCCchHhHhHhCCCCCcccCceeEEEeeecCccCC-------CccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331 158 DGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHG-------LEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDK 230 (409)
Q Consensus 158 dG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (409)
||.+|.+|+.++.....+.+..++++.+..+.... .......+++++..+..+|++++..++++.+..+....
T Consensus 163 DG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (400)
T PRK06475 163 DGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPG 242 (400)
T ss_pred CCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCc
Confidence 99999999999776666778888777654332110 11223445677778889999988766655443322211
Q ss_pred CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331 231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA 310 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a 310 (409)
. ........+.+.+.+..|.+.+..+++... ....+++....+. ..|..+|++|+|||||.++|+.|||+|+|
T Consensus 243 ~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~----~~~~~grvvLiGDAAH~~~P~~GqG~n~a 315 (400)
T PRK06475 243 E-VWSKTGDKAHLKSIYADWNKPVLQILAAID--EWTYWPLFEMADA----QFVGPDRTIFLGDASHAVTPFAAQGAAMA 315 (400)
T ss_pred c-cCCCCCCHHHHHHHhcCCChHHHHHHhcCC--ceeECcCcccCCC----cceecCCEEEEecccccCCchhhhhHHHH
Confidence 1 111111245677788899999888887653 2334554433221 13356899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHH
Q 015331 311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIF 387 (409)
Q Consensus 311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~ 387 (409)
|+||..|+++|.. . ++..+|+.|++.|++++..++..++.... ........|+..+
T Consensus 316 ieDa~~La~~L~~---~------------------~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~r~~~~ 374 (400)
T PRK06475 316 IEDAAALAEALDS---D------------------DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLF 374 (400)
T ss_pred HHHHHHHHHHHhc---C------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999963 1 46689999999999999999999864433 4456777899988
Q ss_pred HHHhhhhhhhhhcc
Q 015331 388 SVLLGRLMMKILEF 401 (409)
Q Consensus 388 ~~~~~~~~~~~~~~ 401 (409)
.......+.+...|
T Consensus 375 ~~~~~~~~~~~~~~ 388 (400)
T PRK06475 375 AIRSPESFLKDLDW 388 (400)
T ss_pred hhcChhhhccccCc
Confidence 76655555444443
No 5
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-45 Score=346.60 Aligned_cols=358 Identities=17% Similarity=0.237 Sum_probs=262.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+||||||+|+++|+.|+++|++|+|+||.+.....+.++.++++++++|+++|+++.+.+.+.++..+.++.. ++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDP-TGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcC-CCC
Confidence 4899999999999999999999999999999988777778899999999999999999999887777777776644 333
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCC-CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS-GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~-~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
....+.+.......+...+.++|..|.+.|.+.+++ ++++++++|++++.++++++|++++|+++++|+||+|||.+|.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 333333332222222234579999999999887654 7999999999999998999999999999999999999999999
Q ss_pred hHhHhCCCCC---cccCceeEEEeeecCccC-CCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHH
Q 015331 164 VAKWLGFKKP---AFAGRSDIRGCTDFKLRH-GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKT 239 (409)
Q Consensus 164 vr~~lg~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (409)
+|+.+..... .+.+...+. ...+... .....+..+.+++..+.++|..++...+.+.+..+... ...+.+..
T Consensus 160 vR~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~ 235 (391)
T PRK07588 160 VRRLVFGPERDFEHYLGCKVAA--CVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDN--PPLTPAEE 235 (391)
T ss_pred chhhccCCccceEEEcCcEEEE--EEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCcc--ccCCHHHH
Confidence 9998633222 122322222 1221111 11223444556777788999988876666555433221 23345666
Q ss_pred HHHHHHHhcCCCHHHHHHHHcCCC-CceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHH
Q 015331 240 KQFVLSKCHDLPEQVKAIVENTPL-DSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILA 318 (409)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La 318 (409)
.+.+.+.+..+.+....+++.... ..+...+.. ....++|..+|++|+|||||.++|+.|||+|+||+||..|+
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La 310 (391)
T PRK07588 236 KQLLRDQFGDVGWETPDILAALDDVEDLYFDVVS-----QIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLA 310 (391)
T ss_pred HHHHHHHhccCCccHHHHHHhhhcccchheeeee-----eeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHH
Confidence 777888887665544444433211 111111110 11234678899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331 319 RCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL 391 (409)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~ 391 (409)
+.|.... ...+.+|+.|++.|++++..++..+..++. .+++...+|+.+|..+-
T Consensus 311 ~~L~~~~-------------------~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 311 GELARAG-------------------GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHhcc-------------------CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc
Confidence 9997621 146789999999999999999999987766 67788899999999655
No 6
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.1e-44 Score=345.77 Aligned_cols=377 Identities=26% Similarity=0.324 Sum_probs=277.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
|+++.||+||||||+||++|+.|+++|++|+||||.+.+...++++.+++++.++|+++|+++.+.+.........++..
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 80 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDA 80 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeC
Confidence 78889999999999999999999999999999999998888889999999999999999999998877766666666654
Q ss_pred cCCcccccccccccC-CCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331 81 VSCQPASEISFKTKG-NRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG 156 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~ 156 (409)
..+.....+.+.... ...+.....++|..+.+.|.+.+. +++++++++|++++.+++.+.+++.+|+++.+|+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 81 VDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEE
Confidence 344333333322111 111223346899999999998763 4789999999999988888999999998999999999
Q ss_pred cCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCC--ccccceeecCceEEEEEecCCCeEEE-EEEEcCCCCCCCCC
Q 015331 157 CDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGL--EPKFQQFLGKGFRYGFLPCNDQTVYW-FFNWCPSNQDKELE 233 (409)
Q Consensus 157 AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~ 233 (409)
|||.+|.+|+.+....+.+.+...+++.+........ ......+.+++.+++.+|..++..+. ++.+..+.... ..
T Consensus 161 AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~~ 239 (396)
T PRK08163 161 CDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEE-WG 239 (396)
T ss_pred CCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcc-cc
Confidence 9999999999873334455666666665543221111 11123445666678889998876433 33333222111 11
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331 234 GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED 313 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d 313 (409)
. .....+.+.+.+..+.+.+.++++... .+..+......+ .++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus 240 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~D 312 (396)
T PRK08163 240 V-KDGSKEEVLSYFEGIHPRPRQMLDKPT--SWKRWATADREP----VAKWSTGRVTLLGDAAHPMTQYMAQGACMALED 312 (396)
T ss_pred c-CCCCHHHHHHHHcCCChHHHHHHhcCC--ceeEccccCCCc----ccccccCcEEEEecccccCCcchhccHHHHHHH
Confidence 1 111245677888888888888876542 222222222222 236788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHHHHH
Q 015331 314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIFSVL 390 (409)
Q Consensus 314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~~~~ 390 (409)
|..|++.|... ..+++++|+.|+++|++++..++..++.++. .......+|+.++...
T Consensus 313 a~~La~~L~~~-------------------~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~r~~~~~~~ 373 (396)
T PRK08163 313 AVTLGKALEGC-------------------DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAKGVERQVRNLLWKGR 373 (396)
T ss_pred HHHHHHHHHhc-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCHHHHHHHHHhhcc
Confidence 99999999752 1257899999999999999999999988876 4456788899888877
Q ss_pred hhhhhhhhhcccCC
Q 015331 391 LGRLMMKILEFDCG 404 (409)
Q Consensus 391 ~~~~~~~~~~~~~~ 404 (409)
....+.+...|..+
T Consensus 374 ~~~~~~~~~~~~~~ 387 (396)
T PRK08163 374 TQEQFYDALEWLYG 387 (396)
T ss_pred ChhhhhhhcCcccc
Confidence 76666666665543
No 7
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=334.44 Aligned_cols=360 Identities=23% Similarity=0.330 Sum_probs=263.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
|.+..||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.++.+++++.+.|+++|+.+.+.+...+.....++..
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 77888999999999999999999999999999999998888889999999999999999999998887777777666643
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD 158 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (409)
.+.....+...............++|..+.+.|.+.+. +++++++++|++++.+++.+.|.+.+|+++.+|+||+||
T Consensus 81 -~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 81 -DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred -CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 33332222221111110112346889999999988663 679999999999998888899999999999999999999
Q ss_pred CCchHhHhHh-CCC-CCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCCh
Q 015331 159 GVNSVVAKWL-GFK-KPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNP 236 (409)
Q Consensus 159 G~~s~vr~~l-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (409)
|.+|.+|+.+ +.. .+.+.+..++.+.+..+. .. .....+.+++..+.++|.+++..++++....+.. .....
T Consensus 160 G~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~ 233 (375)
T PRK06847 160 GLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA--EV-DRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDN---PRIEP 233 (375)
T ss_pred CCCcchhhHhcCCCCCceeccceEEEEEecCCC--Cc-cceEEEeCCCcEEEEEcCCCCeEEEEEeccCccc---ccCCh
Confidence 9999999987 443 344566666555443321 11 1234555666778889998887655554332221 12334
Q ss_pred hHHHHHHHHHhcCCCH-HHHHHHHcCC-CCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHH
Q 015331 237 DKTKQFVLSKCHDLPE-QVKAIVENTP-LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDG 314 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da 314 (409)
+.+.+.+.+.+..+++ ....+.+... .......++.... ...+|..+||+|+|||||.++|+.|||+|+||+||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA 309 (375)
T PRK06847 234 DTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLL----VPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDA 309 (375)
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhcc----CCCCccCCeEEEEechhccCCCCccccHHHHHHHH
Confidence 5556677777777765 3444443221 1122222322211 12357889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chh---HHHHHHHHHH
Q 015331 315 IILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGK---IINFLRDKIF 387 (409)
Q Consensus 315 ~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~---~~~~~r~~~~ 387 (409)
..|++.|.+ . ..++++|+.|+++|++++..+++.|+.++. ..+ ....+|++++
T Consensus 310 ~~La~~L~~---~-----------------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (375)
T PRK06847 310 IVLAEELAR---H-----------------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESME 369 (375)
T ss_pred HHHHHHHhh---C-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHH
Confidence 999999976 1 267899999999999999999999988776 333 5667788777
Q ss_pred HHHh
Q 015331 388 SVLL 391 (409)
Q Consensus 388 ~~~~ 391 (409)
..++
T Consensus 370 ~~~~ 373 (375)
T PRK06847 370 LLAQ 373 (375)
T ss_pred HhcC
Confidence 7543
No 8
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.9e-44 Score=339.08 Aligned_cols=351 Identities=18% Similarity=0.192 Sum_probs=246.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc----CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL----RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+||+||||||+|+++|+.|++.|++|+|+|+.+.. ...++++.+++++.++|+++|+++.+.+...++..+.+++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999987432 23478999999999999999999998877777777776654
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC 157 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A 157 (409)
. +.....+.. .. .....+.++|..|.+.|.+.+. +++++++++++++..+++.++|.+.++ +++||+||+|
T Consensus 82 ~-g~~~~~~~~--~~--~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgA 155 (374)
T PRK06617 82 K-ASEILDLRN--DA--DAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIIC 155 (374)
T ss_pred C-CceEEEecC--CC--CCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEe
Confidence 3 322222222 11 1223568999999999998764 468899999999999888899999776 8999999999
Q ss_pred CCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEEEEEEcCCCCCCCCCCCh
Q 015331 158 DGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYWFFNWCPSNQDKELEGNP 236 (409)
Q Consensus 158 dG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~ 236 (409)
||.+|.+|+.++..........++.+.+..+..+ ....++.+...|. ++++|+.++. ..+++....+........+.
T Consensus 156 DG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~-~~~~~~~~~~~g~-~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~ 233 (374)
T PRK06617 156 DGANSKVRSHYFANEIEKPYQTALTFNIKHEKPH-ENCAMEHFLPLGP-FALLPLKDQYASSVIWSTSSDQAALIVNLPV 233 (374)
T ss_pred CCCCchhHHhcCCCcccccCCeEEEEEEeccCCC-CCEEEEEecCCCC-EEEeECCCCCeEEEEEeCCHHHHHHHHcCCH
Confidence 9999999999977653333355555544433221 1223444545554 7889998875 33443332111111111222
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHH
Q 015331 237 DKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGII 316 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~ 316 (409)
+.+.+.+...+ .+.+.. +. .......+++... ..++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus 234 ~~~~~~~~~~~---~~~~~~-i~--~~~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~ 302 (374)
T PRK06617 234 EEVRFLTQRNA---GNSLGK-IT--IDSEISSFPLKAR-----IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEI 302 (374)
T ss_pred HHHHHHHHHhh---chhcCc-ee--eccceeEEEeeee-----eccceecCCEEEEEcccccCCCCccccHHHHHHHHHH
Confidence 22322222211 111111 10 1112233343322 2347889999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHhh
Q 015331 317 LARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLG 392 (409)
Q Consensus 317 La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~~ 392 (409)
|++.|.. ..+|++|+++|++++..++..+..+.. +.+....+|+.+|..+-.
T Consensus 303 La~~L~~------------------------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~ 358 (374)
T PRK06617 303 LSMIVSN------------------------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKVINN 358 (374)
T ss_pred HHHHHcC------------------------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 9998832 147999999999999999999987765 778899999999986655
Q ss_pred hhhhhh
Q 015331 393 RLMMKI 398 (409)
Q Consensus 393 ~~~~~~ 398 (409)
-...|+
T Consensus 359 ~~~~k~ 364 (374)
T PRK06617 359 FKPIKN 364 (374)
T ss_pred CHHHHH
Confidence 444443
No 9
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=3.6e-44 Score=341.50 Aligned_cols=360 Identities=19% Similarity=0.225 Sum_probs=246.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc------ceeEEechhHHHHHHHcCCchHHHhh-cccccCe
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT------GFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGM 75 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~ 75 (409)
+++||+||||||+|+++|+.|+++|++|+|+|+.+.+... .++..++++++++|+++|+++.+.+. ..++...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~ 81 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence 3689999999999999999999999999999998865421 25667899999999999999998764 4566666
Q ss_pred EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331 76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTK 152 (409)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad 152 (409)
.++.... ...+.+.......++..+.++|..|.+.|.+.+ ++++++++++|++++.+++.++|++.+|+++++|
T Consensus 82 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 158 (400)
T PRK08013 82 EVWDKDS---FGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR 158 (400)
T ss_pred EEEeCCC---CceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence 6654321 112222222112223345799999999998866 3579999999999999888899999999999999
Q ss_pred EEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEEEEEEcCCCCCC
Q 015331 153 VLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYWFFNWCPSNQDK 230 (409)
Q Consensus 153 ~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~ 230 (409)
+||+|||.+|.+|+.++++.... +...++.+.+.....+. ......+.+.+ .++++|..++. ..+++....+....
T Consensus 159 lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~ 236 (400)
T PRK08013 159 LVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHD-AVARQVFHGDG-ILAFLPLSDPHLCSIVWSLSPEEAQR 236 (400)
T ss_pred EEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCC-CEEEEEEcCCC-CEEEEECCCCCeEEEEEEcCHHHHHH
Confidence 99999999999999998875433 34444444443322111 11233444444 67788997754 33443332221111
Q ss_pred CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331 231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA 310 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a 310 (409)
......+.+.+.+.+.+ .+.+.. ++.. .....+++... ..++|..+||+|+|||||.++|+.|||+|+|
T Consensus 237 ~~~~~~~~~~~~l~~~~---~~~l~~-~~~~--~~~~~~~l~~~-----~~~~~~~grv~LiGDAAH~~~P~~GQG~n~g 305 (400)
T PRK08013 237 MQQAPEEEFNRALAIAF---DNRLGL-CELE--SERQVFPLTGR-----YARQFAAHRLALVGDAAHTIHPLAGQGVNLG 305 (400)
T ss_pred HHcCCHHHHHHHHHHHH---hHhhCc-eEec--CCccEEeccee-----ecccccCCcEEEEechhhcCCccccCchhhh
Confidence 01222333333333222 111110 0000 01112222221 3457889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHH
Q 015331 311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKI 386 (409)
Q Consensus 311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~ 386 (409)
++||..|++.|...+... . ......+|++|+++|++++..++..+..... .++....+|+.+
T Consensus 306 i~Da~~La~~L~~~~~~~----------~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~ 371 (400)
T PRK08013 306 FMDAAELIAELRRLHRQG----------K----DIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIG 371 (400)
T ss_pred HHHHHHHHHHHHHHHhcC----------C----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 999999999999866431 0 0012357999999999999999988866544 678899999999
Q ss_pred HHHHhh
Q 015331 387 FSVLLG 392 (409)
Q Consensus 387 ~~~~~~ 392 (409)
|..+..
T Consensus 372 l~~~~~ 377 (400)
T PRK08013 372 LKLADT 377 (400)
T ss_pred HHHHhh
Confidence 986544
No 10
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=4.3e-44 Score=341.88 Aligned_cols=366 Identities=18% Similarity=0.184 Sum_probs=254.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC-CccC----CcceeEEechhHHHHHHHcCCchHHHhh-cccccC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS-ESLR----VTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQG 74 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~-~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~ 74 (409)
|++.+||+||||||+|+++|+.|+++|++|+|+|+. +.+. ...++..++++++++|+++|+++.+.+. ..++..
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 80 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIA 80 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccE
Confidence 667899999999999999999999999999999996 3221 2346788999999999999999999764 566666
Q ss_pred eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEec
Q 015331 75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKT 151 (409)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~a 151 (409)
+.++.... ...+.+.......+...+.+.+..+.+.|.+.+ ++++++++++|++++.+++.+.|++.+|++++|
T Consensus 81 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a 157 (405)
T PRK08850 81 MEVWEQDS---FARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTA 157 (405)
T ss_pred EEEEeCCC---CceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEe
Confidence 66654321 122223222211122345678888888888765 357899999999999988889999999999999
Q ss_pred CEEEEcCCCchHhHhHhCCCCCc-ccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEEEEEEcCCCCC
Q 015331 152 KVLIGCDGVNSVVAKWLGFKKPA-FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYWFFNWCPSNQD 229 (409)
Q Consensus 152 d~vV~AdG~~s~vr~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 229 (409)
|+||+|||.+|.+|+.+++.... .++..++.+.+..+..+ ......+++++..+.++|+.++. ..+++........
T Consensus 158 ~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~ 235 (405)
T PRK08850 158 KLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPH--NSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAE 235 (405)
T ss_pred CEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCC--CCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHH
Confidence 99999999999999999887543 24556666655443321 22223345555567889998654 3333333222111
Q ss_pred CCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhh
Q 015331 230 KELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCA 309 (409)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~ 309 (409)
.....+.+++.+.+.+.+. ..+.. ++. ......+++... ..++|..+|++|+|||||.++|+.|||+|+
T Consensus 236 ~~~~~~~~~~~~~l~~~~~---~~~~~-~~~--~~~~~~~pl~~~-----~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ 304 (405)
T PRK08850 236 ALLAMSDEQFNKALTAEFD---NRLGL-CEV--VGERQAFPLKMR-----YARDFVRERVALVGDAAHTIHPLAGQGVNL 304 (405)
T ss_pred HHHcCCHHHHHHHHHHHHh---hhhCc-EEE--cccccEEeccee-----eccccccCcEEEEEhhhhcCCccccccHHH
Confidence 1122233444454544432 11100 000 011112232221 235788999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHH
Q 015331 310 ALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDK 385 (409)
Q Consensus 310 al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~ 385 (409)
||+||..|+++|....... .......+|++|+++|++++..++..+..+.. .++....+|+.
T Consensus 305 ai~Da~~La~~L~~~~~~~--------------~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~ 370 (405)
T PRK08850 305 GLLDAASLAQEILALWQQG--------------RDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGI 370 (405)
T ss_pred HHHHHHHHHHHHHHHHhcC--------------CCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 9999999999999876421 01135789999999999999999999976655 67788999999
Q ss_pred HHHHHhhhhhh
Q 015331 386 IFSVLLGRLMM 396 (409)
Q Consensus 386 ~~~~~~~~~~~ 396 (409)
+|..+..-...
T Consensus 371 ~l~~~~~~~~~ 381 (405)
T PRK08850 371 GMSLAGQLPGA 381 (405)
T ss_pred HHHHHhhCHHH
Confidence 99865554433
No 11
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=3e-43 Score=331.02 Aligned_cols=354 Identities=17% Similarity=0.132 Sum_probs=245.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.||+||||||+|+++|+.|+++|++|+|||+.+.++..+.++.+.++++++|+++|+++.+.+...++....+++.. +.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~-g~ 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD-GN 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC-CC
Confidence 38999999999999999999999999999999988888889999999999999999999988777777777776543 32
Q ss_pred cccccccc-ccCCCCCccccccCHHHHHHHHHhhCC-CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 85 PASEISFK-TKGNRGGHEVRSVKRSLLMEALERELP-SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~l~~~~~-~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
........ ..........+.+.|..|.+.|.+... +++++++++|++++.+++.++|++.+|+++++|+||+|||.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S 160 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS 160 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc
Confidence 22111111 011111122346789999998887653 6899999999999988888999999999999999999999999
Q ss_pred HhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccce-eecCceEEEEEecCCCeE-EEEEEEcCCCCCCCCCCChhHH
Q 015331 163 VVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQ-FLGKGFRYGFLPCNDQTV-YWFFNWCPSNQDKELEGNPDKT 239 (409)
Q Consensus 163 ~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 239 (409)
.+|+.+....... .....+..++..+..... ..+.. +.+++.++.++|..++.. ..++.+...+... .....+..
T Consensus 161 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 238 (372)
T PRK05868 161 NVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRI-DYRDTEAQ 238 (372)
T ss_pred hHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCCCceEEEEEEecCCccc-ccCChHHH
Confidence 9999984433222 222222333333332221 22333 357777788899887543 3334343322111 11223345
Q ss_pred HHHHHHHhc--CCC-HHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHH
Q 015331 240 KQFVLSKCH--DLP-EQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGII 316 (409)
Q Consensus 240 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~ 316 (409)
.+.+.+.|. .|. +.+.+.+... ..+....+. ....++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus 239 ~~~l~~~f~~~~w~~~~l~~~~~~~--~~~~~~~~~-----~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~ 311 (372)
T PRK05868 239 FAELQRRMAEDGWVRAQLLHYMRSA--PDFYFDEMS-----QILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYI 311 (372)
T ss_pred HHHHHHHHhhCCCchHHHHhhcccC--Cceeeccce-----EEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHH
Confidence 677777776 454 3343433322 112111111 122347889999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHH
Q 015331 317 LARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIF 387 (409)
Q Consensus 317 La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~ 387 (409)
|+++|... .++++++|+.|++.++|++.+.+........ .+.+..++|+..|
T Consensus 312 La~~L~~~-------------------~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~ 367 (372)
T PRK05868 312 LAGELKAA-------------------GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSI 367 (372)
T ss_pred HHHHHHhc-------------------CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhccc
Confidence 99999762 1268999999999988877777776544422 6667667666544
No 12
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=2e-43 Score=338.24 Aligned_cols=344 Identities=23% Similarity=0.329 Sum_probs=251.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccc----cCeEEEe
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQL----QGMVVAS 79 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----~~~~~~~ 79 (409)
++|+||||||+||++|+.|+++| ++|+||||.+.++..|.++.+.++++++|+++|+.+.+.+..... ....+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 699999999988888999999999999999999988877654221 1111111
Q ss_pred ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331 80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG 159 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG 159 (409)
.++.....+.... ........++|..|.+.|.+.+++..++++++|++++.++++++|.+.+|+++++|+||+|||
T Consensus 81 -~~~~~~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG 156 (414)
T TIGR03219 81 -RNGSDASYLGATI---APGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADG 156 (414)
T ss_pred -EecCccceeeeec---cccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCC
Confidence 1111111111100 011122368999999999999887889999999999998889999999999999999999999
Q ss_pred CchHhHhHhCC------CCCcccCceeEEEeeecCccC----------CCccccceeecCceEEEEEecCCCeEEEEEEE
Q 015331 160 VNSVVAKWLGF------KKPAFAGRSDIRGCTDFKLRH----------GLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNW 223 (409)
Q Consensus 160 ~~s~vr~~lg~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 223 (409)
.+|.+|+.+.. ..+.+.+..++++.+...... ........+.+.+.++.++|..+++.++++.+
T Consensus 157 ~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 236 (414)
T TIGR03219 157 IKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAF 236 (414)
T ss_pred ccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEE
Confidence 99999998731 234566777777765432110 00112234567777788899998876544444
Q ss_pred cCCCCC------CCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCC
Q 015331 224 CPSNQD------KELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFH 297 (409)
Q Consensus 224 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~ 297 (409)
..+... .......+...+.+.+.+..|++.+.++++...... .+++....+ .++|..+||+|+|||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~----~~~w~~grv~LiGDAAH 310 (414)
T TIGR03219 237 ISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPT--LWALHDLAE----LPGYVHGRVALIGDAAH 310 (414)
T ss_pred EcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCC--ceeeeeccc----ccceeeCcEEEEEcccC
Confidence 322111 001111223456778888899999998888764332 223322222 23778899999999999
Q ss_pred CCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331 298 PMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY 374 (409)
Q Consensus 298 ~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 374 (409)
.++|+.|||+|+||+||..|++.|.....+ ...++++|+.|+++|++++..+++.|+.++.
T Consensus 311 ~m~P~~GqGa~~AieDA~~La~~L~~~~~~----------------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~ 371 (414)
T TIGR03219 311 AMLPHQGAGAGQGLEDAYFLARLLGDTELE----------------AGDLPALLEAYDDVRRPRACRVQRTSREAGE 371 (414)
T ss_pred CCCCCcCcchHhHHHHHHHHHHHHHhhccC----------------cchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875432 2478999999999999999999999988775
No 13
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=6.5e-43 Score=344.37 Aligned_cols=355 Identities=25% Similarity=0.302 Sum_probs=253.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+||+||||||+|+++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+.+++.+.+.+.....++.. ++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-~g 88 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA-KG 88 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC-CC
Confidence 67999999999999999999999999999999998877788999999999999999999999887777777666643 33
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEc--CC--CEEecCEEEE
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLA--DG--AVFKTKVLIG 156 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~--~g--~~~~ad~vV~ 156 (409)
.....+...............+++..+++.|.+.+ ++++++++++|+++++++++++|++. +| .+++||+||+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVg 168 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVG 168 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEe
Confidence 33333332111111111234678889999988755 47899999999999999999988876 45 3799999999
Q ss_pred cCCCchHhHhHhCCCCCcccCceeEEE-eeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331 157 CDGVNSVVAKWLGFKKPAFAGRSDIRG-CTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGN 235 (409)
Q Consensus 157 AdG~~s~vr~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (409)
|||.+|.+|+.+++..........+.. .+..............++.++..+.++|..++...|.+...+.+... ....
T Consensus 169 ADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~~ 247 (538)
T PRK06183 169 CDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLAS 247 (538)
T ss_pred cCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcCC
Confidence 999999999999876443322222221 11111111112223345566667788999988877776664433211 1112
Q ss_pred hhHHHHHHHHHhcCCC--HHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331 236 PDKTKQFVLSKCHDLP--EQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED 313 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d 313 (409)
+ +.+.+.+..+. +...+ ......+.+. ....++|..+||+|+|||||.++|+.|||+|+||+|
T Consensus 248 ~----~~~~~~l~~~~~~~~~~~------~~~~~~~~~~-----~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~D 312 (538)
T PRK06183 248 P----ENVWRLLAPWGPTPDDAE------LIRHAVYTFH-----ARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRD 312 (538)
T ss_pred H----HHHHHHHHhhCCCCcceE------EEEEEeeeEc-----cEEhhhhccCCEEEEechhhcCCCccccchhhhHHH
Confidence 2 33333333321 10000 0011111111 123457889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHH
Q 015331 314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSV 389 (409)
Q Consensus 314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~ 389 (409)
|..|++.|...+++. ..+.+|+.|+++|++++..+++.+..++. .++....+|+.+|..
T Consensus 313 A~~La~kLa~~~~g~-----------------~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~ 375 (538)
T PRK06183 313 AANLAWKLAAVLRGR-----------------AGDALLDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRA 375 (538)
T ss_pred HHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHh
Confidence 999999999876653 56789999999999999999999988766 778889999998876
Q ss_pred Hhh
Q 015331 390 LLG 392 (409)
Q Consensus 390 ~~~ 392 (409)
+..
T Consensus 376 ~~~ 378 (538)
T PRK06183 376 LNY 378 (538)
T ss_pred hhc
Confidence 543
No 14
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=3.3e-43 Score=338.05 Aligned_cols=370 Identities=21% Similarity=0.225 Sum_probs=256.2
Q ss_pred CcEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCccCC------------cceeEEechhHHHHHHHcCCchHHHhh
Q 015331 5 EDIVIVGAGIAGLTTSLALHR----LGIRSLVLESSESLRV------------TGFAITLWTNAWRALDAVGISDSLRQQ 68 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~----~g~~V~v~E~~~~~~~------------~~~~~~~~~~~~~~l~~~gl~~~~~~~ 68 (409)
+||+||||||+|+++|+.|++ +|++|+|||+.+.+.. ..+++.++++++++|+.+|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 8999999999654331 347899999999999999999999765
Q ss_pred c-ccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC-----CCeEEeCceEEEEEEe-------
Q 015331 69 H-IQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP-----SGTIRYSSKVVSVEES------- 135 (409)
Q Consensus 69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~-----~~~i~~~~~v~~v~~~------- 135 (409)
. .++..+.++... +. ..+.+.... ......+.+++..+.+.|.+.+. +++++++++|++++.+
T Consensus 81 ~~~~~~~~~~~~~~-~~--~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~ 156 (437)
T TIGR01989 81 RIQPFGRMQVWDGC-SL--ALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDN 156 (437)
T ss_pred cCCceeeEEEecCC-CC--ceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCC
Confidence 3 455555554332 21 123333221 11223457899999998887652 4789999999999752
Q ss_pred CCeEEEEEcCCCEEecCEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCC
Q 015331 136 GLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCND 214 (409)
Q Consensus 136 ~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 214 (409)
++.++|++.+|++++||+||+|||.+|.+|+.+++..... +.+.++.+.+...........++.|... ..+.++|+++
T Consensus 157 ~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~-g~~~~lPl~~ 235 (437)
T TIGR01989 157 SNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT-GPIALLPLPD 235 (437)
T ss_pred CCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCC-CCEEEeECCC
Confidence 4678899999999999999999999999999998876544 3344445444433211222334455544 4578899998
Q ss_pred CeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhc----CCCH------HHHHHHH--------------------cCCCC
Q 015331 215 QTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCH----DLPE------QVKAIVE--------------------NTPLD 264 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~--------------------~~~~~ 264 (409)
+...|++.............+++.+.+.+.+.+. .++. ...++.+ .....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (437)
T TIGR01989 236 NNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDK 315 (437)
T ss_pred CCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhheeecc
Confidence 8766665554332222233455666666655551 0000 0000000 00000
Q ss_pred ceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhh
Q 015331 265 SILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEF 344 (409)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (409)
....+++.. ...++|..+|++|+|||||.++|+.|||+|+||+||..|++.|.++.... . .
T Consensus 316 ~~~~~~~~~-----~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~----------~----~ 376 (437)
T TIGR01989 316 SRAAFPLGL-----GHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVG----------A----D 376 (437)
T ss_pred cceeEEecc-----cchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcC----------C----C
Confidence 011222221 12347789999999999999999999999999999999999999876532 0 0
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHhhhhhhhh
Q 015331 345 KRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLLGRLMMKI 398 (409)
Q Consensus 345 ~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~ 398 (409)
.....+|++|+++|++++..++..+..+.. .++....+|+.+|..+..-...|+
T Consensus 377 ~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~ 434 (437)
T TIGR01989 377 IGSISSLKPYERERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKN 434 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhhhCHHhHH
Confidence 123569999999999999999999987765 778999999999987666555444
No 15
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=5.6e-43 Score=334.83 Aligned_cols=376 Identities=20% Similarity=0.250 Sum_probs=257.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccC--CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLR--VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+||+||||||+|+++|+.|+++| ++|+|+|+.+... ..+++..+++++.++|+++|+++.+.+.+.+.....++..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999995 9999999987643 3468999999999999999999999887777777766654
Q ss_pred cCCcccc--cccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331 81 VSCQPAS--EISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG 156 (409)
Q Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~ 156 (409)
..+.... .+.+...........+.++|..+.+.|.+.+. +++++++++|++++.+++.+.|++.+|.++++|+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVA 161 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEE
Confidence 3322211 12222111111122346899999999988764 6799999999999998889999999998999999999
Q ss_pred cCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331 157 CDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGN 235 (409)
Q Consensus 157 AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (409)
|||.+|.+|+.+++..... ++..++........... ...... +.++..++++|.++++..|.+....+........+
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~ 239 (403)
T PRK07333 162 ADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHG-GRAEEH-FLPAGPFAILPLKGNRSSLVWTERTADAERLVALD 239 (403)
T ss_pred cCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCC-CEEEEE-eCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCC
Confidence 9999999999998765332 34444444333332211 222233 33444578899998876654432211110001122
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331 236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI 315 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~ 315 (409)
.+.+.+.+.+.+..+...+ .. ......++... ...++|..+||+|+|||||.++|+.|||+|+||+||.
T Consensus 240 ~~~~~~~l~~~~~~~~~~~----~~--~~~~~~~~~~~-----~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~ 308 (403)
T PRK07333 240 DLVFEAELEQRFGHRLGEL----KV--LGKRRAFPLGL-----TLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVA 308 (403)
T ss_pred HHHHHHHHHHHhhhhcCce----Ee--ccCccEeechh-----hhhhhccCCCEEEEechhhcCCCccccchhhhHHHHH
Confidence 3333344444333221110 00 01111122211 2344788999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331 316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL 391 (409)
Q Consensus 316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~ 391 (409)
.|+++|....... .....+++|++|+++|++++..++..++.... .++....+|+.++..+.
T Consensus 309 ~La~~L~~~~~~~--------------~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 374 (403)
T PRK07333 309 ALAEVVVEAARLG--------------LDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGLVD 374 (403)
T ss_pred HHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 9999999876421 01146889999999999999999999877664 67788899998887553
Q ss_pred h-----hhhhhhhcccCCccc
Q 015331 392 G-----RLMMKILEFDCGKLC 407 (409)
Q Consensus 392 ~-----~~~~~~~~~~~~~~~ 407 (409)
. +.+++.+.-+++++|
T Consensus 375 ~~~~~~~~~~~~~~g~~~~~~ 395 (403)
T PRK07333 375 RLPKLKSFFIRQAAGLTGDTP 395 (403)
T ss_pred cCHHHHHHHHHHHhCcCCCCc
Confidence 3 334444433344455
No 16
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.2e-43 Score=336.88 Aligned_cols=360 Identities=19% Similarity=0.221 Sum_probs=244.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC--cceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV--TGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
.++||+||||||+|+++|+.|+++|++|+|+||.+.+.. .++++.++++++++|+++|+++++.+.+.+.....+...
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 468999999999999999999999999999999987643 467889999999999999999998877777666655432
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEE
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVL 154 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~v 154 (409)
. +... ..+...........+.+.+..+.+.|.+.+ ++++++++++|++++.+++.+.|++.++ .+++||+|
T Consensus 97 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlv 173 (415)
T PRK07364 97 D-YPGV--VKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLV 173 (415)
T ss_pred C-CCce--eeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEE
Confidence 2 2111 122211111111223344456888887765 4688999999999998888888888643 36999999
Q ss_pred EEcCCCchHhHhHhCCCCCccc-CceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCC
Q 015331 155 IGCDGVNSVVAKWLGFKKPAFA-GRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELE 233 (409)
Q Consensus 155 V~AdG~~s~vr~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 233 (409)
|+|||.+|.+|+.++.....+. ...++...+..+..+. ...+..|+..+ .++++|.+++...+++....+.......
T Consensus 174 IgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 251 (415)
T PRK07364 174 VAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHN-DIAYERFWPSG-PFAILPLPGNRCQIVWTAPHAQAKALLA 251 (415)
T ss_pred EEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCC-CEEEEEecCCC-CeEEeECCCCCEEEEEECCHHHHHHHHC
Confidence 9999999999999987654332 2333333333322211 12223344444 4778999988765554332211111112
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331 234 GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED 313 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d 313 (409)
.+.+++.+.+.+.+..+.+.+. .. .....+++.. ...++|..+|++|+|||||.++|+.|||+|+||+|
T Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~----~~--~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~D 320 (415)
T PRK07364 252 LPEAEFLAELQQRYGDQLGKLE----LL--GDRFLFPVQL-----MQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRD 320 (415)
T ss_pred CCHHHHHHHHHHHhhhhhcCce----ec--CCCceecchh-----hhhhhhcCCcEEEEecccccCCCcccccHhHHHHH
Confidence 2344555555554433222111 01 1112233321 12347788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHH
Q 015331 314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSV 389 (409)
Q Consensus 314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~ 389 (409)
|..|+++|....... . .-...++|++|+++|++++..++..+..... .+++...+|+.++..
T Consensus 321 A~~La~~L~~~~~~~----------~----~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~ 386 (415)
T PRK07364 321 AAALAQVLQTAHQRG----------E----DIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWL 386 (415)
T ss_pred HHHHHHHHHHHHhcC----------C----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 999999998875421 0 0122489999999999999999988876654 667888999998885
Q ss_pred Hhh
Q 015331 390 LLG 392 (409)
Q Consensus 390 ~~~ 392 (409)
+..
T Consensus 387 ~~~ 389 (415)
T PRK07364 387 LRH 389 (415)
T ss_pred Hhh
Confidence 543
No 17
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=6.1e-43 Score=334.29 Aligned_cols=363 Identities=21% Similarity=0.265 Sum_probs=245.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--------CCcceeEEechhHHHHHHHcCCchHHHhh-cccccC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--------RVTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQG 74 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~ 74 (409)
.+||+||||||+|+++|+.|+++|++|+|||+.+.. ....++..+++++.++|+++|+++.+.+. ..++..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999998631 11235678999999999999999998753 455556
Q ss_pred eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331 75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTK 152 (409)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad 152 (409)
+.+++. ++. ..+.+.......+...+.+++..+.+.|.+.+. +++++++++|++++.+++.++|++.+|.+++||
T Consensus 82 ~~~~~~-~~~--~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 82 MQVWDG-SGT--GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred EEEEcC-CCC--ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 665543 221 222332211111223457888899988887664 578999999999999888899999999889999
Q ss_pred EEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEE-EEEEcCCCC-
Q 015331 153 VLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYW-FFNWCPSNQ- 228 (409)
Q Consensus 153 ~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~~~~~~~- 228 (409)
+||+|||.+|.+|+.+++..... +...++...+..+..+. ...+..+ .++..+.++|+..+. ..| .+.+..+..
T Consensus 159 ~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~ 236 (405)
T PRK05714 159 LVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHR-ATAWQRF-TDDGPLAFLPLERDGDEHWCSIVWSTTPEE 236 (405)
T ss_pred EEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCC-CEEEEEc-CCCCCeEEeeCCCCCCCCeEEEEEECCHHH
Confidence 99999999999999998764432 22222222222222111 1223333 444468889986432 112 222222211
Q ss_pred -CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchh
Q 015331 229 -DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGG 307 (409)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~ 307 (409)
......+.+.+.+.+.+.+. ..+.+++.. .....+++... ..++|..+|++|+|||||.++|+.|||+
T Consensus 237 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~---~~~~~~~l~~~-----~~~~~~~~rv~LlGDAAH~~~P~~GQG~ 305 (405)
T PRK05714 237 AERLMALDDDAFCAALERAFE---GRLGEVLSA---DPRLCVPLRQR-----HAKRYVEPGLALIGDAAHTIHPLAGQGV 305 (405)
T ss_pred HHHHHCCCHHHHHHHHHHHHH---HHhCCceec---CCccEEeccee-----ehhhhccCCEEEEEeccccCCCcccccc
Confidence 11112234444455544432 222222211 11223333332 2457889999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHH
Q 015331 308 CAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLR 383 (409)
Q Consensus 308 ~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r 383 (409)
|+||+||..|+++|..+.... . ......+|+.|+++|++++..++..+..+++ +++....+|
T Consensus 306 n~al~DA~~La~~L~~~~~~g----------~----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 371 (405)
T PRK05714 306 NLGFLDAAVLAEVLLHAAERG----------E----RLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLR 371 (405)
T ss_pred cHHHHHHHHHHHHHHHHHhcC----------C----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 999999999999998765321 0 0123589999999999999999999987765 677899999
Q ss_pred HHHHHHHhhhhhh
Q 015331 384 DKIFSVLLGRLMM 396 (409)
Q Consensus 384 ~~~~~~~~~~~~~ 396 (409)
+..|+.+-.....
T Consensus 372 ~~~l~~~~~~~~~ 384 (405)
T PRK05714 372 NTGLKLVDQMPEA 384 (405)
T ss_pred HHHHHHHhhCHHH
Confidence 9999855433333
No 18
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=8.8e-42 Score=333.19 Aligned_cols=354 Identities=27% Similarity=0.365 Sum_probs=254.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcc---eeEEechhHHHHHHHcCCc--hHHHhhccccc-Ce
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTG---FAITLWTNAWRALDAVGIS--DSLRQQHIQLQ-GM 75 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~---~~~~~~~~~~~~l~~~gl~--~~~~~~~~~~~-~~ 75 (409)
++++|+||||||+||++|+.|+++|++|+||||.+.. +..+ .++.++++++++|+.+|++ +++.+.+.... .+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 4689999999999999999999999999999998632 2222 4688999999999999853 55555443221 11
Q ss_pred E-EEeccCCccccccccc-ccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCE
Q 015331 76 V-VASSVSCQPASEISFK-TKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKV 153 (409)
Q Consensus 76 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~ 153 (409)
. +.....+.....+... ..........+.++|..|.+.|.+.++...++++++|++++.+++.++|++.+|+++++|+
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDl 239 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDL 239 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCE
Confidence 1 1121122221122111 1011111223579999999999988865567899999999999999999999999999999
Q ss_pred EEEcCCCchHhHhHh-CCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331 154 LIGCDGVNSVVAKWL-GFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL 232 (409)
Q Consensus 154 vV~AdG~~s~vr~~l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
||+|||.+|.+|+.+ +...+.+.+..++++.+..............+.+.+.++...|..++...|+.....+...
T Consensus 240 VVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~--- 316 (668)
T PLN02927 240 LVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGG--- 316 (668)
T ss_pred EEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccc---
Confidence 999999999999887 5555667788888877655322111222344567777777778888777676544332211
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331 233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~ 312 (409)
...++..++.+++.+..|.+.+.++++......+..+.+..+.+.. +|..+||+|+|||||.++|+.|||.|+||+
T Consensus 317 ~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~----~W~~grVvLiGDAAH~~~P~~GqG~n~Aie 392 (668)
T PLN02927 317 ADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGF----TWGKGRVTLLGDSIHAMQPNMGQGGCMAIE 392 (668)
T ss_pred cccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCC----ccccCcEEEEcCccCCCCCccccchHHHHH
Confidence 1124556788889998999999998887654444444555444432 678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc
Q 015331 313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG 373 (409)
Q Consensus 313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 373 (409)
||..|++.|..+.... .......+++++|+.|+++|++++..++..++...
T Consensus 393 Da~~La~~L~~~~~~~----------~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~ 443 (668)
T PLN02927 393 DSFQLALELDEAWKQS----------VETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAA 443 (668)
T ss_pred HHHHHHHHHHHhhccc----------cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999875421 00011236889999999999999999999875553
No 19
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=6.9e-42 Score=325.17 Aligned_cols=358 Identities=19% Similarity=0.187 Sum_probs=242.3
Q ss_pred CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhccc-ccCeEEE
Q 015331 1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQ-LQGMVVA 78 (409)
Q Consensus 1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~~~~~~ 78 (409)
|+ +++||+||||||+|+++|+.|+++|++|+|+|+.+.++..+.+..+++++.++|+++|+++.+.+.... .....++
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence 54 678999999999999999999999999999999998876666677999999999999999998775543 3333333
Q ss_pred eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe--EEEEEcCCCEEecCE
Q 015331 79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF--KLVNLADGAVFKTKV 153 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~--~~v~~~~g~~~~ad~ 153 (409)
.+++....+++..... .++ ...++|..|.+.|.+.+ ++++++++++|++++.+++. +.|++.+|+++.+|+
T Consensus 81 --~~g~~~~~~~~~~~~~-~g~-~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~ 156 (388)
T PRK07045 81 --HDKELIASLDYRSASA-LGY-FILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTV 156 (388)
T ss_pred --cCCcEEEEecCCcccc-CCc-eEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCE
Confidence 2343333333332111 122 23578999999998865 36899999999999886554 468888999999999
Q ss_pred EEEcCCCchHhHhHh-CCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCC
Q 015331 154 LIGCDGVNSVVAKWL-GFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKE 231 (409)
Q Consensus 154 vV~AdG~~s~vr~~l-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (409)
||+|||.+|.+|+.+ +...... +....+.+.+....... ......+..++.+.+++|.+++...|++.+..+.....
T Consensus 157 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 235 (388)
T PRK07045 157 LVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVR-ECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGY 235 (388)
T ss_pred EEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCcc-ccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhc
Confidence 999999999999974 5443221 22222334443332211 11112233334557789998887777766654432211
Q ss_pred -CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCC-CceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhh
Q 015331 232 -LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPL-DSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCA 309 (409)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~ 309 (409)
.....+.+.+.+.+.+ .+...+.++.... ..+...++. ....++|..+||+|+|||||.++|+.|||+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 307 (388)
T PRK07045 236 LADTTRTKLLARLNEFV---GDESADAMAAIGAGTAFPLIPLG-----RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL 307 (388)
T ss_pred cCCCCHHHHHHHHhhhc---CccchHHHhccCcccccceeecC-----ccccccccCCCEEEEEccccccCCCccccHHH
Confidence 1122333333333322 1233333332211 111112222 12334778899999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHH
Q 015331 310 ALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDK 385 (409)
Q Consensus 310 al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~ 385 (409)
||+||..|++.|..++.+ ....+++|++|+++|++++..++..++.+.. +...+...|.+
T Consensus 308 ai~Da~~La~~L~~~~~~----------------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (388)
T PRK07045 308 AIEDAGELGACLDLHLSG----------------QIALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQ 371 (388)
T ss_pred HHHHHHHHHHHHHhhcCC----------------chhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhh
Confidence 999999999999986543 1257889999999999999999999877665 44555555555
Q ss_pred HH
Q 015331 386 IF 387 (409)
Q Consensus 386 ~~ 387 (409)
++
T Consensus 372 ~~ 373 (388)
T PRK07045 372 LQ 373 (388)
T ss_pred hh
Confidence 44
No 20
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.7e-42 Score=328.33 Aligned_cols=361 Identities=20% Similarity=0.201 Sum_probs=242.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--CC----cceeEEechhHHHHHHHcCCchHHHhh-ccccc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--RV----TGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQ 73 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~ 73 (409)
|. .+||+||||||+|+++|+.|++.|++|+|||+.+.. .. ..+...++++++++|+++|+++.+.+. ..++.
T Consensus 1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 54 589999999999999999999999999999987532 11 124568999999999999999988763 34554
Q ss_pred CeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEe
Q 015331 74 GMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFK 150 (409)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ 150 (409)
....+.... . ...+...........+.+.+..|...|.+.+ ++++++++++|++++.+++.++|++.+|.+++
T Consensus 80 ~~~~~~~~~--~--~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (384)
T PRK08849 80 RLETWEHPE--C--RTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIE 155 (384)
T ss_pred eEEEEeCCC--c--eEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEE
Confidence 444433211 1 1112111111111224566667888887654 46899999999999999889999999999999
Q ss_pred cCEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCC
Q 015331 151 TKVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQD 229 (409)
Q Consensus 151 ad~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 229 (409)
+|+||+|||.+|.+|+.+++..... +...++......... .....+..|...|. ..++|+.++...+++...+....
T Consensus 156 ~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~g~-~~~~pl~~~~~~~~~~~~~~~~~ 233 (384)
T PRK08849 156 AKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQP-QQDITWQQFTPSGP-RSFLPLCGNQGSLVWYDSPKRIK 233 (384)
T ss_pred eeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCC-CCCEEEEEeCCCCC-EEEeEcCCCceEEEEECCHHHHH
Confidence 9999999999999999998764333 223332222222221 12233444554444 45578876643333322211100
Q ss_pred CCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhh
Q 015331 230 KELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCA 309 (409)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~ 309 (409)
.....+++.+.+.+.+.+. +.+.++ .......+++. ....++|..+|++|+|||||.++|+.|||+|+
T Consensus 234 ~~~~~~~~~~~~~l~~~~~---~~~~~~----~~~~~~~~~l~-----~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~ 301 (384)
T PRK08849 234 QLSAMNPEQLRSEILRHFP---AELGEI----KVLQHGSFPLT-----RRHAQQYVKNNCVLLGDAAHTINPLAGQGVNL 301 (384)
T ss_pred HHHcCCHHHHHHHHHHHhh---hhhCcE----EeccceEeecc-----ccccchhccCCEEEEEcccccCCCCccchHhH
Confidence 1112345555565655443 211111 11122223222 12345788999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHH
Q 015331 310 ALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDK 385 (409)
Q Consensus 310 al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~ 385 (409)
||+||..|++.|... + ...+++|+.|+++|++++..++..+..+.. .+..+..+|+.
T Consensus 302 al~Da~~L~~~l~~~--~-----------------~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ 362 (384)
T PRK08849 302 GFKDVDVLLAETEKQ--G-----------------VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLKFVRNA 362 (384)
T ss_pred HHHHHHHHHHHHHhc--C-----------------CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 999999999998642 1 246789999999999999999988766544 45788999999
Q ss_pred HHHHHhhhhhhhhh
Q 015331 386 IFSVLLGRLMMKIL 399 (409)
Q Consensus 386 ~~~~~~~~~~~~~~ 399 (409)
+|..+....+.|+.
T Consensus 363 ~l~~~~~~~~~k~~ 376 (384)
T PRK08849 363 ALKLAENSGPLKTQ 376 (384)
T ss_pred HHHHHhccHHHHHH
Confidence 99977666655543
No 21
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=1.5e-42 Score=330.21 Aligned_cols=367 Identities=20% Similarity=0.207 Sum_probs=251.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC-----cceeEEechhHHHHHHHcCCchHHHhh-cccccCeE
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV-----TGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGMV 76 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~ 76 (409)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+.. ..+...++++++++|+++|+++.+.+. ..++....
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 568999999999999999999999999999999875432 125578999999999999999998763 45555555
Q ss_pred EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEE
Q 015331 77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVL 154 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~v 154 (409)
++....... ..+.... .......+.++|..|.+.|.+.+. +++++++++|++++.+++.++|++.+|+++++|+|
T Consensus 85 ~~~~~~~~~-~~~~~~~--~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 161 (392)
T PRK08773 85 VWDAGGGGE-LGFDADT--LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA 161 (392)
T ss_pred EEeCCCCce-EEechhc--cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 543322111 1222111 111223457899999999987663 68999999999999988889999988889999999
Q ss_pred EEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCC
Q 015331 155 IGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELE 233 (409)
Q Consensus 155 V~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 233 (409)
|+|||.+|.+|+.+++..+.. +...++...+....++ ....+..+... ..+.++|..++...|++.+..+.......
T Consensus 162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~-g~~~~lP~~~~~~~~~w~~~~~~~~~~~~ 239 (392)
T PRK08773 162 IAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPH-QATAWQRFLPT-GPLALLPFADGRSSIVWTLPDAEAERVLA 239 (392)
T ss_pred EEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCC-CCEEEEEeCCC-CcEEEEECCCCceEEEEECCHHHHHHHHc
Confidence 999999999999998775432 2333333333322222 12233344444 45788999888766655553322111122
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331 234 GNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALED 313 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~d 313 (409)
.+.+.+.+.+.+.+..+...+. .. .....+++.. ...++|..+|++|+|||||.++|+.|||+|+|++|
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~----~~--~~~~~~~l~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~D 308 (392)
T PRK08773 240 LDEAAFSRELTQAFAARLGEVR----VA--SPRTAFPLRR-----QLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRD 308 (392)
T ss_pred CCHHHHHHHHHHHHhhhhcCeE----ec--CCccEeechh-----hhhhhhcCCcEEEEechhhcCCCchhchhhhhHHH
Confidence 3344455555554432221111 00 1111223221 23457889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc--c--chhHHHHHHHHHHHH
Q 015331 314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG--Y--DGKIINFLRDKIFSV 389 (409)
Q Consensus 314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~--~--~~~~~~~~r~~~~~~ 389 (409)
|..|+++|.+++... . ......+|++|+++|++++..+...+..+. + +++.+..+|+.+|..
T Consensus 309 a~~La~~L~~~~~~~----------~----~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~ 374 (392)
T PRK08773 309 VAALQQLVRQAHARR----------A----DWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGL 374 (392)
T ss_pred HHHHHHHHHHHHhcC----------C----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 999999999876431 0 113457999999999999765555544333 3 788999999999997
Q ss_pred Hhhhhhhhhh
Q 015331 390 LLGRLMMKIL 399 (409)
Q Consensus 390 ~~~~~~~~~~ 399 (409)
+......|+.
T Consensus 375 ~~~~~~~k~~ 384 (392)
T PRK08773 375 AGKLPPLVDA 384 (392)
T ss_pred HhhCHHHHHH
Confidence 7766666554
No 22
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.1e-42 Score=331.05 Aligned_cols=363 Identities=18% Similarity=0.197 Sum_probs=251.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
++.+||+||||||+|+++|+.|+++|++|+|||+.+.+.. .++..+.+++.++|+++|+++.+.+...++..+.++...
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT 83 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence 3568999999999999999999999999999999876543 456778889999999999999998877777777776543
Q ss_pred CCcccc--cccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331 82 SCQPAS--EISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC 157 (409)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A 157 (409)
+.... ...+...........+.+++..+.+.|.+.+. +...+++++|++++.+++.++|++++++++++|+||+|
T Consensus 84 -g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A 162 (388)
T PRK07494 84 -GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGA 162 (388)
T ss_pred -CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence 22111 11122111111222457899999999988763 22338899999999988999999999989999999999
Q ss_pred CCCchHhHhHhCCCCCc-ccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCCh
Q 015331 158 DGVNSVVAKWLGFKKPA-FAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNP 236 (409)
Q Consensus 158 dG~~s~vr~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (409)
||.+|.+|+.+++.... .++..++...+..+.++. ......+. +...+.++|++++...+++....+........+.
T Consensus 163 dG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~ 240 (388)
T PRK07494 163 DGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQ-NVSTEFHT-EGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSD 240 (388)
T ss_pred cCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCC-CEEEEEeC-CCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCH
Confidence 99999999999887543 245555544443322211 11223333 4445778999877655544433222111122344
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHcCC-CCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331 237 DKTKQFVLSKCHDLPEQVKAIVENTP-LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI 315 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~ 315 (409)
+++.+.+.+.+. .++.... ......+++.. ...++|..+||+|+|||||.++|++|||+|+|++||.
T Consensus 241 ~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~l~~-----~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~ 308 (388)
T PRK07494 241 AALSAAIEERMQ-------SMLGKLTLEPGRQAWPLSG-----QVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVA 308 (388)
T ss_pred HHHHHHHHHHHh-------hhcCCeEEccCCcEeechH-----HHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHH
Confidence 444444443322 2222111 11112333332 2334778899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331 316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL 391 (409)
Q Consensus 316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~ 391 (409)
.|++.|.....+ ....++|++|+++|++++..++..+..+.. ..+....+|+.+|..+.
T Consensus 309 ~La~~L~~~~~~-----------------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~ 371 (388)
T PRK07494 309 TLVEIVEDRPED-----------------PGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLY 371 (388)
T ss_pred HHHHHHHhcCCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 999999874322 246789999999999999888877755543 78889999999998655
Q ss_pred hhhhhh
Q 015331 392 GRLMMK 397 (409)
Q Consensus 392 ~~~~~~ 397 (409)
.-...+
T Consensus 372 ~~~~~~ 377 (388)
T PRK07494 372 SFGPLR 377 (388)
T ss_pred hCHHHH
Confidence 544444
No 23
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=1e-42 Score=331.69 Aligned_cols=364 Identities=21% Similarity=0.219 Sum_probs=252.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-----CcceeEEechhHHHHHHHcCCchHHHhhc-ccccC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-----VTGFAITLWTNAWRALDAVGISDSLRQQH-IQLQG 74 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~ 74 (409)
|+ ++||+||||||+|+++|+.|+++|++|+|+||.+.+. ..+.++.+++++.++|+++|+++.+.... .+...
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~ 79 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRD 79 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccce
Confidence 55 6899999999999999999999999999999998642 34567788999999999999998886543 34445
Q ss_pred eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEec
Q 015331 75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKT 151 (409)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~a 151 (409)
..++.... ...+.+...........+.++|..+.+.|.+.+ .+++++++++|++++.+++.+.|++++|++++|
T Consensus 80 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a 156 (392)
T PRK09126 80 AKVLNGRS---PFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTA 156 (392)
T ss_pred EEEEcCCC---CceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEe
Confidence 55543222 112233221111112234578888888888765 368999999999999888888999999999999
Q ss_pred CEEEEcCCCchHhHhHhCCCCC-cccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331 152 KVLIGCDGVNSVVAKWLGFKKP-AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDK 230 (409)
Q Consensus 152 d~vV~AdG~~s~vr~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (409)
|+||+|||.+|.+|+.+++... ...+...+........ ........+++.+..++++|..++...+++.+..+....
T Consensus 157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 234 (392)
T PRK09126 157 RLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--PHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEA 234 (392)
T ss_pred CEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--CCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHH
Confidence 9999999999999999987643 2334433333322221 112223345566667889999988776666543322111
Q ss_pred CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331 231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA 310 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a 310 (409)
....+++.+.+.+.+.+..... .+ . .......+++.. ...++|..+|++|+|||||.++|++|||+|+|
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~---~~-~--~~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a 303 (392)
T PRK09126 235 LLALDPEAFAAEVTARFKGRLG---AM-R--LVSSRHAYPLVA-----VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLG 303 (392)
T ss_pred HHcCCHHHHHHHHHHHHhhhcc---Ce-E--EcCCCcEeechH-----HHHHHHhhcceEEEehhhhcCCCcccchhhhh
Confidence 1123344444444444321111 00 0 011112223221 22347788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHH
Q 015331 311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKI 386 (409)
Q Consensus 311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~ 386 (409)
|+||..|++.|..+++.. .....+++|+.|+++|++++..++..++.+.. .+++...+|+.+
T Consensus 304 i~da~~la~~L~~~~~~~--------------~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 369 (392)
T PRK09126 304 LKGQDILARLILAAARRG--------------QDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAV 369 (392)
T ss_pred HHHHHHHHHHHHHHHhcC--------------CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 999999999999876431 01135789999999999999999999977755 567888999999
Q ss_pred HHHHhhhhh
Q 015331 387 FSVLLGRLM 395 (409)
Q Consensus 387 ~~~~~~~~~ 395 (409)
|..+....+
T Consensus 370 ~~~~~~~~~ 378 (392)
T PRK09126 370 LRAANRFPP 378 (392)
T ss_pred HHHHhhChH
Confidence 987764333
No 24
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=9.3e-42 Score=326.47 Aligned_cols=340 Identities=26% Similarity=0.325 Sum_probs=243.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+||||||+||++|+.|+++|++|+|||+.+.++..+.++.++++++++|+++|+++.+...+.+.....++... +.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~-g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRH-GQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCC-CC
Confidence 48999999999999999999999999999999988888899999999999999999999988877777777666442 32
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCC---C-CeEEeCceEEEEEEeCCeEEEEEcCC-----CEEecCEEE
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---S-GTIRYSSKVVSVEESGLFKLVNLADG-----AVFKTKVLI 155 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~-~~i~~~~~v~~v~~~~~~~~v~~~~g-----~~~~ad~vV 155 (409)
......... ........+.++|..|.+.|.+.+. + ..++++++|++++.+++.+.+.+.++ .+++||+||
T Consensus 80 ~~~~~~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 80 RIWSEPRGL-AAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred EEeeccCCc-ccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEE
Confidence 222211111 1111223346899999999987652 3 47999999999998877766666543 379999999
Q ss_pred EcCCCchHhHhHhCCC--CCcccCceeEEEeeecCccCCCccccceeec-CceEEEEEecCCC-------eEEEEEEEcC
Q 015331 156 GCDGVNSVVAKWLGFK--KPAFAGRSDIRGCTDFKLRHGLEPKFQQFLG-KGFRYGFLPCNDQ-------TVYWFFNWCP 225 (409)
Q Consensus 156 ~AdG~~s~vr~~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~ 225 (409)
+|||.+|.+|++++.. .+.+.+...+++....+.. .......+.+ .+..+.++|..++ .+.|.+.+..
T Consensus 159 gADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~ 236 (413)
T PRK07538 159 GADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPF--LTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRV 236 (413)
T ss_pred ECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccc--cCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcC
Confidence 9999999999998644 3445566666665443321 1111122232 3455778888753 4667766654
Q ss_pred CCC--CCCCCCChhHHHHHHHHHhcCCCHH---HHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCC
Q 015331 226 SNQ--DKELEGNPDKTKQFVLSKCHDLPEQ---VKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMT 300 (409)
Q Consensus 226 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~ 300 (409)
+.. ............+.+++.+.++... +.++++.. .....+++....+. ++|..+|++|+|||||.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~p~~~~~~~----~~w~~grv~LvGDAAH~~~ 310 (413)
T PRK07538 237 DDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAA--EAIYEYPMVDRDPL----PRWTRGRVTLLGDAAHPMY 310 (413)
T ss_pred CccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcC--cceeeccccccCCC----CcccCCcEEEEeeccCcCC
Confidence 321 1111112223345666666655442 45666533 22334455444333 3678899999999999999
Q ss_pred CCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331 301 PDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY 374 (409)
Q Consensus 301 P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 374 (409)
|+.|||+|+||+||..|++.|.+. .+.+++|+.|+++|++++.+++..++.++.
T Consensus 311 P~~GqG~~~Ai~Da~~La~~L~~~--------------------~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~ 364 (413)
T PRK07538 311 PVGSNGASQAILDARALADALAAH--------------------GDPEAALAAYEAERRPATAQIVLANRLNGP 364 (413)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHhhHHHHHHHHHhhhcCh
Confidence 999999999999999999999872 157899999999999999999999988664
No 25
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=327.38 Aligned_cols=363 Identities=16% Similarity=0.158 Sum_probs=247.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhc-ccccCeEEEec
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQH-IQLQGMVVASS 80 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~ 80 (409)
.+++||+||||||+|+++|+.|+++|++|+|+|+.+.+....++..+++.+.++|+++|+++.+.+.. .++..+.++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~- 82 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI- 82 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE-
Confidence 36799999999999999999999999999999998765555578899999999999999999887633 3455555542
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE---EEEEcCCC-EEecCE
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK---LVNLADGA-VFKTKV 153 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~---~v~~~~g~-~~~ad~ 153 (409)
.+.....+.+...... ....+.+.+..+.+.|.+.+ ++++++++++|++++.+++.+ .+...+|+ +++||+
T Consensus 83 -~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~ 160 (407)
T PRK06185 83 -GGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADL 160 (407)
T ss_pred -CCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCE
Confidence 2222223333332222 12234688889999888754 468999999999998877765 34445664 799999
Q ss_pred EEEcCCCchHhHhHhCCCCCcccC-ceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331 154 LIGCDGVNSVVAKWLGFKKPAFAG-RSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL 232 (409)
Q Consensus 154 vV~AdG~~s~vr~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
||+|||.+|.+|+.+++....+.. ..... +..+............+.++..++++|.. +.+.+.+...........
T Consensus 161 vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~ 237 (407)
T PRK06185 161 VVGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALR 237 (407)
T ss_pred EEECCCCchHHHHHcCCCccccCCCceeEE--EecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhh
Confidence 999999999999999887654332 22222 22222221111222345556668889987 555444444332221112
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHHcCC-CCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331 233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTP-LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL 311 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al 311 (409)
..+.+. +.+.+....+.+.+.+.... ......+++.. ...++|..+|++|+|||||.++|++|||+|+||
T Consensus 238 ~~~~~~----~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl 308 (407)
T PRK06185 238 AAGLEA----FRERVAELAPELADRVAELKSWDDVKLLDVRV-----DRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAI 308 (407)
T ss_pred hhhHHH----HHHHHHHhCccHHHHHhhcCCccccEEEEEec-----cccccccCCCeEEEeccccccCcccccchhHHH
Confidence 223333 33333333333333333221 12222333322 133467889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----ch--hHHHHHHHH
Q 015331 312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DG--KIINFLRDK 385 (409)
Q Consensus 312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~--~~~~~~r~~ 385 (409)
+||..|++.|.+++... +..+..|++|+++|++++..++.++..+.. +. +....+|+.
T Consensus 309 ~Da~~La~~l~~~~~~~----------------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ 372 (407)
T PRK06185 309 QDAVAAANILAEPLRRG----------------RVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPL 372 (407)
T ss_pred HHHHHHHHHHHHHhccC----------------CccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCch
Confidence 99999999999877541 123489999999999999999999876654 44 778889999
Q ss_pred HHHHHhhhhh
Q 015331 386 IFSVLLGRLM 395 (409)
Q Consensus 386 ~~~~~~~~~~ 395 (409)
+|..+-....
T Consensus 373 ~l~~~~~~~~ 382 (407)
T PRK06185 373 LLRLLNRLPW 382 (407)
T ss_pred HHHHHHhChh
Confidence 9886554443
No 26
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=329.70 Aligned_cols=347 Identities=19% Similarity=0.147 Sum_probs=243.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
++||+||||||+||++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+++.+.+.+.+.....+.....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~- 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT- 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc-
Confidence 4899999999999999999999999999999999888888999999999999999999999988776666555432211
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEc--CC-CEEecCEEEEcC
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLA--DG-AVFKTKVLIGCD 158 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~--~g-~~~~ad~vV~Ad 158 (409)
.+.+.......++ ...+++..+++.|.+.+. ++++++++++++++.+++++++++. +| .++++|+||+||
T Consensus 81 ----~~~~~~~~~~~~~-~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgAD 155 (493)
T PRK08244 81 ----RLDFSALDTSSNY-TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGAD 155 (493)
T ss_pred ----cCCcccCCCCCCc-EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECC
Confidence 1222211111122 346889999999887653 6899999999999988888877764 45 479999999999
Q ss_pred CCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCC-CCCCCCCh
Q 015331 159 GVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQ-DKELEGNP 236 (409)
Q Consensus 159 G~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~ 236 (409)
|.+|.+|+.+++..... .....+.+.+..... .......++.++..++++|.+++.+.+.+....... ......+.
T Consensus 156 G~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
T PRK08244 156 GAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDP--PPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTL 233 (493)
T ss_pred CCChHHHHhcCCCccCCCcceEEEEEEEEecCC--CCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCH
Confidence 99999999998765432 222333333222221 111233344566678899999887666543322111 11123345
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHH
Q 015331 237 DKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGII 316 (409)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~ 316 (409)
+++.+.+.+.+... +..........++.. ....++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus 234 ~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~-----~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~ 301 (493)
T PRK08244 234 EELKTSLIRICGTD-------FGLNDPVWMSRFGNA-----TRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN 301 (493)
T ss_pred HHHHHHHHHhhCCC-------CCcCCeeEEEecccc-----eeeHhhhccCcEEEeecceeccCCccccccccchhhHHH
Confidence 55555554443210 000011111122221 123457788999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHH
Q 015331 317 LARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIF 387 (409)
Q Consensus 317 La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~ 387 (409)
|++.|..++++. ..+.+|+.|+++|++++..++..+..... .++....+|+.+.
T Consensus 302 La~~La~~l~g~-----------------~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~ 358 (493)
T PRK08244 302 LGWKLAAAIKGW-----------------APDWLLDSYHAERHPVGTALLRNTEVQTKLFDFTRPGLALRSMLS 358 (493)
T ss_pred HHHHHHHHHcCC-----------------CCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCCchhHHHHHHHH
Confidence 999999987653 45679999999999999999988765543 4455666777643
No 27
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=1.1e-41 Score=324.23 Aligned_cols=357 Identities=22% Similarity=0.264 Sum_probs=251.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-----ceeEEechhHHHHHHHcCCchHHHh-hcccccCeEEEe
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-----GFAITLWTNAWRALDAVGISDSLRQ-QHIQLQGMVVAS 79 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~ 79 (409)
||+||||||+|+++|+.|+++|++|+||||.+.++.. ++++.+++++.+.|+++|+++++.+ ...+.....++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999876432 4789999999999999999999887 666766666654
Q ss_pred ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331 80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG 156 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~ 156 (409)
..... .+.+.......+...+.++|..+.+.|.+.+. +++++++++|++++.+++.+.|++.+|.++.+|+||+
T Consensus 81 ~~~~~---~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 81 GGSFG---ALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred CCCCc---eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 43211 12222111111223457899999999998763 3789999999999988888999999998999999999
Q ss_pred cCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331 157 CDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGN 235 (409)
Q Consensus 157 AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (409)
|||.+|.+|+.++.+.... ....++...+..+... ......++.++..++++|.+++...+.+.............+
T Consensus 158 adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (385)
T TIGR01988 158 ADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPH--QGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS 235 (385)
T ss_pred eCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCC--CCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence 9999999999998664332 3334444433332211 111122333445678899999876665554322111112234
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331 236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI 315 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~ 315 (409)
++++.+.+.+.+..+.. ++ .. ......+++.. ....+|..++|+|+|||||.++|++|||+|+||+||.
T Consensus 236 ~~~~~~~~~~~~~~~~~---~~-~~--~~~~~~~~~~~-----~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~ 304 (385)
T TIGR01988 236 DEEFLAELQRAFGSRLG---AI-TL--VGERHAFPLSL-----THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVA 304 (385)
T ss_pred HHHHHHHHHHHHhhhcC---ce-Ee--ccCcceeechh-----hhhhheecCceEEEecccccCCccccchhhhhHHHHH
Confidence 55555555554432211 10 00 11222333322 1234678899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331 316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL 391 (409)
Q Consensus 316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~ 391 (409)
.|++.|..++... .....+++|+.|+++|++++..++..++.... .++....+|+..++.+.
T Consensus 305 ~La~~L~~~~~~~--------------~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 370 (385)
T TIGR01988 305 ALAEVLEDARRRG--------------EDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFPPLRLLRNLGLRLLN 370 (385)
T ss_pred HHHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 9999999876421 00134789999999999999999999877755 67788888998888654
Q ss_pred h
Q 015331 392 G 392 (409)
Q Consensus 392 ~ 392 (409)
.
T Consensus 371 ~ 371 (385)
T TIGR01988 371 L 371 (385)
T ss_pred h
Confidence 3
No 28
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=9.4e-42 Score=324.09 Aligned_cols=356 Identities=18% Similarity=0.188 Sum_probs=246.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccCCc----ceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 6 DIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVT----GFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
||+||||||+|+++|+.|+++| ++|+|+||.+.++.. ++++.+++++.++|+++|+++.+.+...+.....+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999999876543 46789999999999999999988777666665554432
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC---CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP---SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC 157 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A 157 (409)
.. .. ...+.......+...+.++|..|.+.|.+.+. +++++++++|++++.+++.++|++.+|.++.||+||+|
T Consensus 81 ~~-~~--~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 81 GH-FG--ATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred CC-Cc--eEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 11 11 11111111111223457899999999998763 67999999999999888889999988889999999999
Q ss_pred CCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCC-eEEEEEEEcCCCCCCCCCCC
Q 015331 158 DGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQ-TVYWFFNWCPSNQDKELEGN 235 (409)
Q Consensus 158 dG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (409)
||.+|.+|+.+++..... ++..++...+....... ...+. ++..+..+.++|..++ ...+++....+........+
T Consensus 158 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
T TIGR01984 158 DGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQ-GCAFE-RFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLP 235 (382)
T ss_pred cCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCC-CEEEE-eeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCC
Confidence 999999999998764333 44555555444322211 11222 3334445788999888 44444433221111001223
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331 236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI 315 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~ 315 (409)
.+++.+.+.+.+. +.+.++. . ......+++.. ....+|..+||+|+|||||.++|+.|||+|+||+||.
T Consensus 236 ~~~~~~~~~~~~~---~~~~~~~-~--~~~~~~~~~~~-----~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~ 304 (382)
T TIGR01984 236 DAEFLAELQQAFG---WRLGKIT-Q--VGERKTYPLKL-----RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVE 304 (382)
T ss_pred HHHHHHHHHHHHh---hhccCeE-E--cCCccEeecch-----hhhhheecCCEEEEeecccccCCccccchhhhHHHHH
Confidence 3444444444332 2111111 1 11122222221 2334678899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHHHHh
Q 015331 316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFSVLL 391 (409)
Q Consensus 316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~~~~ 391 (409)
.|++.|...... ...+++|+.|+++|+++...++.++..... .++....+|+.+++.+.
T Consensus 305 ~La~~L~~~~~~-----------------~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 367 (382)
T TIGR01984 305 TLAEVLIDARID-----------------LGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIPLLRALRNLGLLALE 367 (382)
T ss_pred HHHHHHHHhccC-----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 999999876422 145789999999999999999998876654 56678889999988766
Q ss_pred hhh
Q 015331 392 GRL 394 (409)
Q Consensus 392 ~~~ 394 (409)
...
T Consensus 368 ~~p 370 (382)
T TIGR01984 368 NFP 370 (382)
T ss_pred cCH
Confidence 433
No 29
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=315.86 Aligned_cols=335 Identities=22% Similarity=0.266 Sum_probs=238.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+.++|+||||||+||++|+.|+++|++|+|+||.+.+ ...+.++.+++++.++|+++|+.+.. +.+.+.....++..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~- 82 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDR- 82 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeC-
Confidence 3579999999999999999999999999999998754 34577889999999999999998764 44444444444432
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN 161 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
++..+..... ....+.+..+.+.|.+.+++..++++++|++++.+++.++|++.+|+++++|+||+|||.+
T Consensus 83 ~g~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 83 DGRVVQRRPM---------PQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred CCCEeeccCC---------CccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 3322211111 1123577889999998888789999999999999888999999999999999999999999
Q ss_pred hHhHhHh-CCCCCcccCceeEEEeeecCccCC-----CccccceeecCceEEEEEecCCC---------eEEEEEEEcCC
Q 015331 162 SVVAKWL-GFKKPAFAGRSDIRGCTDFKLRHG-----LEPKFQQFLGKGFRYGFLPCNDQ---------TVYWFFNWCPS 226 (409)
Q Consensus 162 s~vr~~l-g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~---------~~~~~~~~~~~ 226 (409)
|.+|+.+ +...+.+.+..++.+++....... ....+..+.+++..+..+|+.++ ...|.+....+
T Consensus 154 S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (386)
T PRK07236 154 STVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAP 233 (386)
T ss_pred chHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCC
Confidence 9999987 333455666666666543211100 11223344566666777777532 23344433322
Q ss_pred CCCC--CC---------------CCChhHHHHHHHHHhcC-CCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCc
Q 015331 227 NQDK--EL---------------EGNPDKTKQFVLSKCHD-LPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGN 288 (409)
Q Consensus 227 ~~~~--~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (409)
.... .. ....+...+.+.+.+.. +++.+..+++...... .+++... ...+|..+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~gr 306 (386)
T PRK07236 234 AGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQPF--VQAIFDL-----EVPRMAFGR 306 (386)
T ss_pred CccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCch--hhhhhcc-----cCcccccCc
Confidence 2000 00 00123345566665554 7888888887654321 1222211 124678899
Q ss_pred EEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHH
Q 015331 289 VCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISM 368 (409)
Q Consensus 289 v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~ 368 (409)
++|+|||||.++|+.|||+|+||+||..|+++|.... .++..+|+.|+++|++++.+++..
T Consensus 307 v~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-------------------~~~~~al~~Ye~~R~~r~~~~~~~ 367 (386)
T PRK07236 307 VALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-------------------GDIDAALAAWEAERLAVGAAIVAR 367 (386)
T ss_pred EEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-------------------cchHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999998631 147899999999999999999999
Q ss_pred hHHhcc
Q 015331 369 AYIVGY 374 (409)
Q Consensus 369 s~~~~~ 374 (409)
|+.++.
T Consensus 368 s~~~~~ 373 (386)
T PRK07236 368 GRRLGA 373 (386)
T ss_pred HHHHHH
Confidence 977654
No 30
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=329.97 Aligned_cols=337 Identities=18% Similarity=0.148 Sum_probs=233.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
+++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+++.+.+.+.....++...
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~- 80 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD- 80 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC-
Confidence 3689999999999999999999999999999999988777889999999999999999999998877766665554322
Q ss_pred CcccccccccccC---CCCC-ccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEE---cCCCEEecCE
Q 015331 83 CQPASEISFKTKG---NRGG-HEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNL---ADGAVFKTKV 153 (409)
Q Consensus 83 ~~~~~~~~~~~~~---~~~~-~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~---~~g~~~~ad~ 153 (409)
+. .....+.... ...+ .....+++..+++.|.+.+. +++++++++|++++++++.+++++ .++++++||+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~ 159 (502)
T PRK06184 81 GS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARY 159 (502)
T ss_pred ce-EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCE
Confidence 21 1111111100 0011 12346888899999888763 689999999999999888888877 5566899999
Q ss_pred EEEcCCCchHhHhHhCCCCCcccCc--eeEEEeeecCccCCCccccceeecCc-eEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331 154 LIGCDGVNSVVAKWLGFKKPAFAGR--SDIRGCTDFKLRHGLEPKFQQFLGKG-FRYGFLPCNDQTVYWFFNWCPSNQDK 230 (409)
Q Consensus 154 vV~AdG~~s~vr~~lg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (409)
||+|||.+|.+|+.+++........ ..+......+. .....+..+.... ..+.++|+.++.. |.+.+..+.. .
T Consensus 160 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~-~ 235 (502)
T PRK06184 160 LVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG--LDRDAWHQWPDGDMGMIALCPLPGTDL-FQIQAPLPPG-G 235 (502)
T ss_pred EEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec--CCCcceEEccCCCCcEEEEEEccCCCe-EEEEEEcCCC-c
Confidence 9999999999999998876543221 22222222221 1122233444433 5677889876643 2222222211 1
Q ss_pred CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331 231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA 310 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a 310 (409)
....+++.+.+.+.+.+...... + ........+... ...+++|..+||+|+|||||.++|+.|||||+|
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~----~--~~~~~~~~~~~~-----~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~g 304 (502)
T PRK06184 236 EPDLSADGLTALLAERTGRTDIR----L--HSVTWASAFRMN-----ARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTS 304 (502)
T ss_pred cCCCCHHHHHHHHHHhcCCCCcc----e--eeeeeeeccccc-----eeEhhhhcCCcEEEeccccccCCCcccccccch
Confidence 12334555555555443211100 0 001111112211 123457788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331 311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY 374 (409)
Q Consensus 311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 374 (409)
|+||..|++.|..++++ ..+++|+.|+++|++++..+++.+.....
T Consensus 305 i~DA~~LawkLa~vl~g------------------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~ 350 (502)
T PRK06184 305 VQDAYNLGWKLAAVLAG------------------APEALLDTYEEERRPVAAAVLGLSTELLD 350 (502)
T ss_pred HHHHHHHHHHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987764 44779999999999999999999876554
No 31
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=322.34 Aligned_cols=345 Identities=20% Similarity=0.172 Sum_probs=240.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS 79 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (409)
|+ ++||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...++..++++++++|+++|+++.+.+.+.......+.
T Consensus 1 ~~-~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~- 78 (488)
T PRK06834 1 MT-EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA- 78 (488)
T ss_pred CC-cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee-
Confidence 54 5899999999999999999999999999999998754 34468889999999999999999987755433221110
Q ss_pred ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEc
Q 015331 80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGC 157 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~A 157 (409)
. ..+.+.......+ ..+.+.+..+++.|.+.+. +++++++++|++++.+++.+.|++.+|.++++|+||+|
T Consensus 79 ~------~~~~~~~~~~~~~-~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgA 151 (488)
T PRK06834 79 A------TRLDISDFPTRHN-YGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGC 151 (488)
T ss_pred e------EecccccCCCCCC-ccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEe
Confidence 0 1111111111111 2245778889999987664 67999999999999998899999888888999999999
Q ss_pred CCCchHhHhHhCCCCCcccC-ceeEEEeeecCccCCCccccceeecCceEEEEEecC-CCeEEEEEEEcCCCCCCCCCCC
Q 015331 158 DGVNSVVAKWLGFKKPAFAG-RSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCN-DQTVYWFFNWCPSNQDKELEGN 235 (409)
Q Consensus 158 dG~~s~vr~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~ 235 (409)
||.+|.+|+.+|+..+.... ...+...+..+... .+.....+.....+.|.. ++.+.+.+..... ....+.+
T Consensus 152 DG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 225 (488)
T PRK06834 152 DGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP----EWGVHRDALGIHAFGRLEDEGPVRVMVTEKQV--GATGEPT 225 (488)
T ss_pred cCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC----CcceeeCCCceEEEeccCCCCeEEEEEecCCC--CCCCCCC
Confidence 99999999999987665432 22333323222111 122223333345567776 5544433332222 1112445
Q ss_pred hhHHHHHHHHHhc-CCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHH
Q 015331 236 PDKTKQFVLSKCH-DLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDG 314 (409)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da 314 (409)
.+++.+.+.+.+. .+.. ........++.. ...+++|..+||+|+|||||.++|+.|||||++|+||
T Consensus 226 ~~~~~~~l~~~~g~~~~~--------~~~~~~~~~~~~-----~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA 292 (488)
T PRK06834 226 LDDLREALIAVYGTDYGI--------HSPTWISRFTDM-----ARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDA 292 (488)
T ss_pred HHHHHHHHHHhhCCCCcc--------ccceeEEecccc-----ceecccccCCcEEEEeeccccCCccccccccccHHHH
Confidence 5566666665543 1111 111112222221 2345688899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc---chhHHHHHHHHHHHHH
Q 015331 315 IILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY---DGKIINFLRDKIFSVL 390 (409)
Q Consensus 315 ~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~---~~~~~~~~r~~~~~~~ 390 (409)
.+|+|.|...+.+. ..+.+|++|+++|++.+.+++..+..+.. .++....+|+.++..+
T Consensus 293 ~nLawkLa~vl~g~-----------------~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~~~~~~~~lR~~~~~~~ 354 (488)
T PRK06834 293 VNLGWKLAQVVKGT-----------------SPESLLDTYHAERHPVAARVLRNTMAQVALLRPDDRTEALRDIVAELL 354 (488)
T ss_pred HHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHh
Confidence 99999999988763 56889999999999999999987755533 6777788899887643
No 32
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=5.7e-41 Score=319.51 Aligned_cols=367 Identities=21% Similarity=0.200 Sum_probs=246.2
Q ss_pred CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC------cceeEEechhHHHHHHHcCCchHHHhh-cccc
Q 015331 1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV------TGFAITLWTNAWRALDAVGISDSLRQQ-HIQL 72 (409)
Q Consensus 1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~ 72 (409)
|+ +++||+||||||+|+++|+.|+++|++|+|+|+.+.... ..+...+++++.++|+++|+++.+.+. ..++
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 44 568999999999999999999999999999999864321 225678999999999999999988653 3344
Q ss_pred cCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEE
Q 015331 73 QGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVF 149 (409)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~ 149 (409)
.....+.+..+. +.+.......+...+.++|..|.+.|.+.+ ++++++++++|++++.+++.+.|++.++.++
T Consensus 81 ~~~~~~~~~~~~----~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~ 156 (391)
T PRK08020 81 RRLETWEWETAH----VVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEI 156 (391)
T ss_pred ceEEEEeCCCCe----EEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEE
Confidence 444443332221 112111111123345789999999998765 4678999999999998888899999898899
Q ss_pred ecCEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCC
Q 015331 150 KTKVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQ 228 (409)
Q Consensus 150 ~ad~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 228 (409)
++|+||+|||.+|.+|+.+++..... +...++...+..+.. .....+..+...+. ..++|..++...+++...+...
T Consensus 157 ~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~p~~~~~~~~v~~~~~~~~ 234 (391)
T PRK08020 157 QAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENP-PGDSTWQQFTPSGP-RAFLPLFDNWASLVWYDSPARI 234 (391)
T ss_pred EeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCC-CCCEEEEEEcCCCC-EEEeECCCCcEEEEEECCHHHH
Confidence 99999999999999999998764322 233444444433322 12233444555544 5678988765443332211111
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhh
Q 015331 229 DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGC 308 (409)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~ 308 (409)
......+.+++.+.+.+.+ ++.+..+.. .....+++.. ...++|..+|++|+|||||.++|+.|||+|
T Consensus 235 ~~~~~~~~~~~~~~l~~~~---~~~~~~~~~----~~~~~~pl~~-----~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n 302 (391)
T PRK08020 235 RQLQAMSMAQLQQEIAAHF---PARLGAVTP----VAAGAFPLTR-----RHALQYVQPGLALVGDAAHTINPLAGQGVN 302 (391)
T ss_pred HHHHCCCHHHHHHHHHHHh---hhhccceEe----ccccEeecce-----eehhhhccCcEEEEechhhccCCcccchhH
Confidence 0111223333333333322 222211110 0112233322 124478899999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc--c--chhHHHHHHH
Q 015331 309 AALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG--Y--DGKIINFLRD 384 (409)
Q Consensus 309 ~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~--~--~~~~~~~~r~ 384 (409)
+||+||..|++.|.+..... .......+|+.|+++|+++...++..+.... + ..+.+..+|+
T Consensus 303 ~al~Da~~La~~L~~~~~~~--------------~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~ 368 (391)
T PRK08020 303 LGYRDVDALLDVLVNARSYG--------------EAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPPLRFARN 368 (391)
T ss_pred HHHHHHHHHHHHHHHHHhcC--------------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 99999999999999865421 0113568999999999999988887765443 3 6789999999
Q ss_pred HHHHHHhhhhhhhhh
Q 015331 385 KIFSVLLGRLMMKIL 399 (409)
Q Consensus 385 ~~~~~~~~~~~~~~~ 399 (409)
.+|..+-...+.|..
T Consensus 369 ~~l~~~~~~~~~k~~ 383 (391)
T PRK08020 369 LGLMAAQRAGVLKRQ 383 (391)
T ss_pred HHHHHHhcCHHHHHH
Confidence 999977666555543
No 33
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=1.4e-40 Score=316.15 Aligned_cols=357 Identities=18% Similarity=0.187 Sum_probs=239.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
++||+||||||+|+++|+.|+++|++|+|+|+.+.+ ....++..++++++++|+++|+++.+.+.+.+...+.++..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD- 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence 579999999999999999999999999999999853 22335566999999999999999999887777777777642
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEE-eCCeEEEEE-cCCC--EEecCEEE
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEE-SGLFKLVNL-ADGA--VFKTKVLI 155 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~-~~~~~~v~~-~~g~--~~~ad~vV 155 (409)
+. ...+++.... .+.....+++..+.+.|.+.+ .++++++++++++++. +++.+.|++ .+|+ +++||+||
T Consensus 81 -g~-~~~~~~~~~~--~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vV 156 (392)
T PRK08243 81 -GR-RHRIDLTELT--GGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIA 156 (392)
T ss_pred -CE-EEEecccccc--CCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEE
Confidence 22 2334443221 122233556777777777654 3689999999999987 566677777 3564 68999999
Q ss_pred EcCCCchHhHhHhCCCCCc-ccCc--eeEEEeeecCccCCCccccceee-cCceEEEEEecCCCeEEEEEEEcCCCCCCC
Q 015331 156 GCDGVNSVVAKWLGFKKPA-FAGR--SDIRGCTDFKLRHGLEPKFQQFL-GKGFRYGFLPCNDQTVYWFFNWCPSNQDKE 231 (409)
Q Consensus 156 ~AdG~~s~vr~~lg~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (409)
+|||.+|.+|+.++..... +... ..+.+... .. .+.... ..+. .++.+.++.|.+++...+++.+......
T Consensus 157 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 231 (392)
T PRK08243 157 GCDGFHGVSRASIPAGALRTFERVYPFGWLGILA-EA-PPVSDE-LIYANHERGFALCSMRSPTRSRYYLQCPLDDKV-- 231 (392)
T ss_pred ECCCCCCchhhhcCcchhhceecccCceEEEEeC-CC-CCCCCc-eEEeeCCCceEEEecCCCCcEEEEEEecCCCCc--
Confidence 9999999999999764322 2221 22222221 11 111111 1222 3333344444445544444444332211
Q ss_pred CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331 232 LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL 311 (409)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al 311 (409)
.....+.+.+.+.+.+..... ..++ .........+++. ....++|..+||+|+|||||.++|++|||+|+||
T Consensus 232 ~~~~~~~~~~~l~~~~~~~~~--~~~~-~~~~~~~~~~~~~-----~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai 303 (392)
T PRK08243 232 EDWSDERFWDELRRRLPPEDA--ERLV-TGPSIEKSIAPLR-----SFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA 303 (392)
T ss_pred ccCChhHHHHHHHHhcCcccc--cccc-cCccccccceeee-----eceeccceeCCEEEEecccccCCCCcCcchhHHH
Confidence 122344455666655542100 0000 0000001111211 1233467789999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-------chhHHHHHHH
Q 015331 312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-------DGKIINFLRD 384 (409)
Q Consensus 312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-------~~~~~~~~r~ 384 (409)
+||..|++.|...+++ ..+++|+.|+++|++++.+++..+..+.. ...+...+|+
T Consensus 304 ~Da~~La~~L~~~~~~------------------~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (392)
T PRK08243 304 SDVRYLARALVEFYRE------------------GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQL 365 (392)
T ss_pred HHHHHHHHHHHHHhcc------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Confidence 9999999999987653 34789999999999999999999877654 5567888999
Q ss_pred HHHHHHhhhhhh
Q 015331 385 KIFSVLLGRLMM 396 (409)
Q Consensus 385 ~~~~~~~~~~~~ 396 (409)
..|..++.....
T Consensus 366 ~~~~~~~~~~~~ 377 (392)
T PRK08243 366 AELDYLTSSRAA 377 (392)
T ss_pred HHHHHHhcCHHH
Confidence 999988877764
No 34
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=321.13 Aligned_cols=338 Identities=17% Similarity=0.151 Sum_probs=233.8
Q ss_pred CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331 1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS 79 (409)
Q Consensus 1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (409)
|+ +.+||+||||||+||++|+.|+++|++|+||||.+.+...+++..+++.++++|+.+|+++.+...+.+......+.
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 54 45799999999999999999999999999999999887788899999999999999999998877666555443332
Q ss_pred ccCCccccccc--ccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEE
Q 015331 80 SVSCQPASEIS--FKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLI 155 (409)
Q Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV 155 (409)
.+..+.... +.............+.+..+++.|.+++. +++++++++|++++.+++++.+.+.+|++++|++||
T Consensus 81 --~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vV 158 (487)
T PRK07190 81 --NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVI 158 (487)
T ss_pred --CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEE
Confidence 221111100 11111011112346788888888887653 689999999999999888888888888899999999
Q ss_pred EcCCCchHhHhHhCCCCCcccCceeEE-EeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCC
Q 015331 156 GCDGVNSVVAKWLGFKKPAFAGRSDIR-GCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEG 234 (409)
Q Consensus 156 ~AdG~~s~vr~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 234 (409)
+|||.+|.+|+.+|+..........+. .-.......+..+....+..+...+.++|..++...+++.. +. ...
T Consensus 159 gADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~~----~~~ 232 (487)
T PRK07190 159 GADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRM--DT----KDF 232 (487)
T ss_pred ECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEc--CC----CCC
Confidence 999999999999998766443222111 11112111111112222334444577789887755443322 11 233
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccC-CCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331 235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNIS-KGNVCVAGDAFHPMTPDIGQGGCAALED 313 (409)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lvGDAA~~~~P~~G~G~~~al~d 313 (409)
+.+++.+.+.+.+...... .........+++. ...+++|. .+||+|+|||||..+|..|||||++|+|
T Consensus 233 t~~~~~~~l~~~~~~~~~~------~~~~~w~s~~~~~-----~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqD 301 (487)
T PRK07190 233 TLEQAIAKINHAMQPHRLG------FKEIVWFSQFSVK-----ESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLAD 301 (487)
T ss_pred CHHHHHHHHHHhcCCCCCc------eEEEEEEEEeeeC-----cEehhhcCcCCcEEEEecccccCCCccccchhhhHHH
Confidence 4444545554433211110 0111122233332 23455775 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331 314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY 374 (409)
Q Consensus 314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 374 (409)
|.+|+|.|..++++. ..+..|+.|+++|++.+.+++..+.....
T Consensus 302 A~nL~wkLa~v~~g~-----------------a~~~lLdtY~~eR~p~a~~vl~~t~~~~~ 345 (487)
T PRK07190 302 AFNLIWKLNMVIHHG-----------------ASPELLQSYEAERKPVAQGVIETSGELVR 345 (487)
T ss_pred HHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888763 45889999999999999999999875543
No 35
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=9.3e-42 Score=321.25 Aligned_cols=337 Identities=26% Similarity=0.320 Sum_probs=218.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccC--eEEEecc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQG--MVVASSV 81 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~--~~~~~~~ 81 (409)
++||+||||||+|+++|+.|+++|++|+||||.+.+...++++.+.++++++|+++|+++.+.+...+... ..+....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 37999999999999999999999999999999999888889999999999999999999998887644332 2222220
Q ss_pred CCcc------cccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCC-----CE
Q 015331 82 SCQP------ASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADG-----AV 148 (409)
Q Consensus 82 ~~~~------~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g-----~~ 148 (409)
.+.. .....+. ..........+.|..|++.|.+.+. ++++++++++++++.+++++++.+.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~ 158 (356)
T PF01494_consen 81 SDSRIWVENPQIREDME--IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEET 158 (356)
T ss_dssp TTSEEEEEEEEEEEECH--STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEE
T ss_pred CCccceeeecccceeee--ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeE
Confidence 0100 0001111 1112334457899999999998763 589999999999999988877665443 26
Q ss_pred EecCEEEEcCCCchHhHhHhCCCCCcccCc--eeEEEee-ecCccCCCccccceeecCceEEEEEecCC-CeEEEEEEEc
Q 015331 149 FKTKVLIGCDGVNSVVAKWLGFKKPAFAGR--SDIRGCT-DFKLRHGLEPKFQQFLGKGFRYGFLPCND-QTVYWFFNWC 224 (409)
Q Consensus 149 ~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~ 224 (409)
++||+||+|||.+|.+|+.++...+..... ..+.... .....................++++|..+ +...+++.+.
T Consensus 159 i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 238 (356)
T PF01494_consen 159 IEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLP 238 (356)
T ss_dssp EEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeee
Confidence 899999999999999999998763322211 1222211 11111111121222334444467899988 3333344343
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCc
Q 015331 225 PSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304 (409)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G 304 (409)
...... ....+...+.+.+.+.. .+..............+++.. ...++|..+||+|+|||||.++|+.|
T Consensus 239 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~grv~LiGDAAh~~~P~~G 308 (356)
T PF01494_consen 239 FDESKE--ERPEEFSPEELFANLPE---IFGPDLLETEIDEISAWPIPQ-----RVADRWVKGRVLLIGDAAHAMDPFSG 308 (356)
T ss_dssp TTTTTC--CSTHCHHHHHHHHHHHH---HHHTCHHHHEEEEEEEEEEEE-----EEESSSEETTEEE-GGGTEEE-CCTS
T ss_pred cccccc--ccccccccccccccccc---ccccccccccccccccccccc-----ccccccccceeEEeccceeeeccccc
Confidence 332221 11222223333333221 111000001122233333322 23446788999999999999999999
Q ss_pred chhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331 305 QGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA 369 (409)
Q Consensus 305 ~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s 369 (409)
||+|+||+||..|++.|....++. ..+++|+.|+++|++++.++++.+
T Consensus 309 qG~n~Ai~da~~La~~L~~~~~g~-----------------~~~~~l~~Y~~~r~~~~~~~~~~~ 356 (356)
T PF01494_consen 309 QGINMAIEDAAALAELLAAALKGE-----------------ASEEALKAYEQERRPRARKAVQFD 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-----------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccHHHHHHHHHHHhcCC-----------------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999988753 567899999999999999998764
No 36
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=2.2e-40 Score=328.84 Aligned_cols=350 Identities=18% Similarity=0.172 Sum_probs=234.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS 79 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (409)
|.+++||+||||||+||++|+.|+++ |++|+|||+.+.+...+++.+++++++++|+++|+++.+.+.+.++..+.++.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 45678999999999999999999995 99999999998888888999999999999999999999988887777777664
Q ss_pred ccCC--cccccc-cccc-cCCCCCccccccCHHHHHHHHHhhCC--C--CeEEeCceEEEEEEeC---CeEEEEEc----
Q 015331 80 SVSC--QPASEI-SFKT-KGNRGGHEVRSVKRSLLMEALERELP--S--GTIRYSSKVVSVEESG---LFKLVNLA---- 144 (409)
Q Consensus 80 ~~~~--~~~~~~-~~~~-~~~~~~~~~~~i~r~~l~~~l~~~~~--~--~~i~~~~~v~~v~~~~---~~~~v~~~---- 144 (409)
.... ..+... .... ......+....+++..+++.|.+.+. + +.+++++++++++.++ ..++|++.
T Consensus 109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 3211 111000 0000 00111223357889999999988763 2 4788999999998764 34777764
Q ss_pred --CC--CEEecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecC--ccCCC-ccccceeecCceEEEEEecCCCe-
Q 015331 145 --DG--AVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFK--LRHGL-EPKFQQFLGKGFRYGFLPCNDQT- 216 (409)
Q Consensus 145 --~g--~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~p~~~~~- 216 (409)
+| ++++||+||+|||.+|.||+.+|+.......... +++.+.. ...+. .....+....+..+.++|..++.
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~-~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~ 267 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHA-WGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL 267 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccce-EEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence 34 4799999999999999999999886554322222 1222211 11111 11111223455678899998885
Q ss_pred EEEEEEEcC---CCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhh-----ccccCCCc
Q 015331 217 VYWFFNWCP---SNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVL-----WGNISKGN 288 (409)
Q Consensus 217 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 288 (409)
+.+++.... +........+++++.+.+.+.+..+...+. ....+..+++..+..-++. ...+..+|
T Consensus 268 ~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~------~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gR 341 (634)
T PRK08294 268 VRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVK------EVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPR 341 (634)
T ss_pred EEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCcee------EEeEEecccccceehhhcccccccccccccCC
Confidence 333333211 111111344566666655554432211111 1112222222222111100 00123689
Q ss_pred EEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHH
Q 015331 289 VCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISM 368 (409)
Q Consensus 289 v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~ 368 (409)
|+|+|||||.++|..|||||++|+||.+|+|.|..++++. ..+++|+.|+++|+++++.+++.
T Consensus 342 VfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~-----------------a~~~lL~tYe~ERrp~a~~li~~ 404 (634)
T PRK08294 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR-----------------SPPELLHTYSAERQAIAQELIDF 404 (634)
T ss_pred EEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753 56789999999999999999999
Q ss_pred hHHhcc
Q 015331 369 AYIVGY 374 (409)
Q Consensus 369 s~~~~~ 374 (409)
+.....
T Consensus 405 ~~~~~~ 410 (634)
T PRK08294 405 DREWST 410 (634)
T ss_pred HHHHHH
Confidence 876654
No 37
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=9.3e-40 Score=322.86 Aligned_cols=354 Identities=18% Similarity=0.212 Sum_probs=237.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.++||+||||||+||++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+.+.+.+.+.+......+.. +
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~ 100 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR-D 100 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC-C
Confidence 457999999999999999999999999999999998777788999999999999999999998877665543333322 1
Q ss_pred CcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEc--CCC-EEecCEEEE
Q 015331 83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLA--DGA-VFKTKVLIG 156 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~--~g~-~~~ad~vV~ 156 (409)
.....+...............+++..+++.|.+.+ ++++++++++|++++.+++.+++++. ++. ++++|+||+
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg 179 (547)
T PRK08132 101 -EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA 179 (547)
T ss_pred -CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence 12222222111111111233578889999998765 35799999999999998888876654 444 689999999
Q ss_pred cCCCchHhHhHhCCCCCcccC-ceeEEEeeecCccCCCccccceee---cCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331 157 CDGVNSVVAKWLGFKKPAFAG-RSDIRGCTDFKLRHGLEPKFQQFL---GKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL 232 (409)
Q Consensus 157 AdG~~s~vr~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
|||.+|.+|+.+|+....... ...+..........+ ...+..+. .++..+++.|..++.+.+.+....... ...
T Consensus 180 ADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 257 (547)
T PRK08132 180 CDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFP-TERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDAD-PEA 257 (547)
T ss_pred CCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCC-CeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCC-chh
Confidence 999999999999886543321 112222122221111 11122221 234455566666664443332222111 111
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331 233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~ 312 (409)
...++.+.+.+.+.+... .. ........+.+. ...+++|..+||+|+|||||.++|+.|||+|+||+
T Consensus 258 ~~~~~~~~~~l~~~~~~~-~~-------~~~~~~~~~~~~-----~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~ 324 (547)
T PRK08132 258 EKKPENVIPRVRALLGED-VP-------FELEWVSVYTFQ-----CRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQ 324 (547)
T ss_pred hcCHHHHHHHHHHHcCCC-CC-------eeEEEEEeeeee-----eeeecccccccEEEEecccccCCCcccccccchHH
Confidence 223334444444333210 00 000011111111 12345788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHH
Q 015331 313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFS 388 (409)
Q Consensus 313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~ 388 (409)
||..|++.|...+++. ..+++|+.|+++|++++..+++.+...+. .++....+|+.++.
T Consensus 325 DA~~LawkLa~vl~g~-----------------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 387 (547)
T PRK08132 325 DADNLAWKLALVLRGR-----------------APDSLLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLR 387 (547)
T ss_pred HHHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Confidence 9999999999987753 46889999999999999999998866654 55666778888776
Q ss_pred HH
Q 015331 389 VL 390 (409)
Q Consensus 389 ~~ 390 (409)
..
T Consensus 388 ~~ 389 (547)
T PRK08132 388 LA 389 (547)
T ss_pred hh
Confidence 44
No 38
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=9e-41 Score=317.92 Aligned_cols=356 Identities=17% Similarity=0.152 Sum_probs=244.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC----CceEEEeCCCccC--CcceeEEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLG----IRSLVLESSESLR--VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMV 76 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g----~~V~v~E~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
+.+||+||||||+|+++|+.|+++| ++|+|+|+.+.+. ...+++.+++.++++|+++|+++. ...++..+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~~~~ 86 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIEHIH 86 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCcccEEE
Confidence 4679999999999999999999987 4799999986433 345799999999999999999886 334444554
Q ss_pred EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCC---CEEec
Q 015331 77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADG---AVFKT 151 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~a 151 (409)
+...... ....+.......+...+.++|..|.+.|.+.+. ++++++++++++++.+++++++++.++ ++++|
T Consensus 87 ~~~~~~~---g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a 163 (398)
T PRK06996 87 VSQRGHF---GRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRA 163 (398)
T ss_pred EecCCCC---ceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEee
Confidence 4322111 111111111112334568999999999998774 578999999999999999999998865 58999
Q ss_pred CEEEEcCCC-chHhHhHhCCCCC-cccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCe---EEEEEEEcCC
Q 015331 152 KVLIGCDGV-NSVVAKWLGFKKP-AFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT---VYWFFNWCPS 226 (409)
Q Consensus 152 d~vV~AdG~-~s~vr~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~ 226 (409)
|+||+|||. +|.+|+.+++... ..++..++++.+..+..+. ...+..+...| .+.++|..++. ..+++...++
T Consensus 164 ~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~G-~~~~lp~~~~~~~~~~~v~~~~~~ 241 (398)
T PRK06996 164 RIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRP-GWAWERFTHEG-PLALLPLGGPRQADYALVWCCAPD 241 (398)
T ss_pred eEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCC-CEEEEEecCCC-CeEEeECCCCCCCcEEEEEECCHH
Confidence 999999997 5778888877643 3356667676555433222 22333444444 47788998654 3333333222
Q ss_pred CCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcch
Q 015331 227 NQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQG 306 (409)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G 306 (409)
........+.+.+.+.+.+.+......+ . .. .....+++. ....++|..+||+|+|||||.++|+.|||
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~-~~--~~~~~~~l~-----~~~~~~~~~grv~LiGDAAH~~~P~~GQG 310 (398)
T PRK06996 242 EAARRAALPDDAFLAELGAAFGTRMGRF---T-RI--AGRHAFPLG-----LNAARTLVNGRIAAVGNAAQTLHPVAGQG 310 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccccCce---E-Ee--cceEEEeee-----cccccceecCCEEEEEhhhccCCcccchh
Confidence 1111122344455566655544321111 0 00 111122222 12234788999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHH
Q 015331 307 GCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFL 382 (409)
Q Consensus 307 ~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~ 382 (409)
+|+||+||..|+++|.. .+ ....+|++|+++|++++..++..+..++. .++....+
T Consensus 311 ~n~ai~Da~~La~~L~~--~~------------------~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~ 370 (398)
T PRK06996 311 LNLGLRDAHTLADALSD--HG------------------ATPLALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHL 370 (398)
T ss_pred HHHHHHHHHHHHHHHHh--cC------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 99999999999999975 11 34577999999999999999999987765 66788999
Q ss_pred HHHHHHHHhhhhhhh
Q 015331 383 RDKIFSVLLGRLMMK 397 (409)
Q Consensus 383 r~~~~~~~~~~~~~~ 397 (409)
|+.+|..+......|
T Consensus 371 R~~~l~~~~~~~~~k 385 (398)
T PRK06996 371 RGAALTALEFVPPLK 385 (398)
T ss_pred HhHHHHHHhhCHHHH
Confidence 999998655544443
No 39
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=1.3e-39 Score=316.77 Aligned_cols=359 Identities=20% Similarity=0.205 Sum_probs=241.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc-cCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
.++||+||||||+|+++|+.|+++|++|+|+||.+. ......|..+++++.++|+++|+++.+.....++.+..++..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~- 110 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDH- 110 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEEC-
Confidence 357999999999999999999999999999999862 122346778999999999999999998887777777766653
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhC-----CCCeEEeCceEEEEEEeCC-------eEEEEEcC----
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL-----PSGTIRYSSKVVSVEESGL-------FKLVNLAD---- 145 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~-----~~~~i~~~~~v~~v~~~~~-------~~~v~~~~---- 145 (409)
++... .+++.. ......+++..+.+.|.+.+ +++++.. .+|+++..+++ +++++..+
T Consensus 111 ~G~~~-~i~~~~-----~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~ 183 (567)
T PTZ00367 111 KGKQV-KLPYGA-----GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDV 183 (567)
T ss_pred CCCEE-EecCCC-----CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccc
Confidence 23221 222221 12234567888888887755 4677754 47877754432 25555444
Q ss_pred -------------------CCEEecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceE
Q 015331 146 -------------------GAVFKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFR 206 (409)
Q Consensus 146 -------------------g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (409)
+++++||+||+|||.+|.+|+.++...+.+.....+.+........+.......+++++..
T Consensus 184 ~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gp 263 (567)
T PTZ00367 184 PENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGP 263 (567)
T ss_pred cccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCce
Confidence 4579999999999999999999986655444445555543221112222333456777888
Q ss_pred EEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhc-CCCHHHHHHHHc-CC-CCceeeccccccCchhhhccc
Q 015331 207 YGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCH-DLPEQVKAIVEN-TP-LDSILVSPLRYRYPWEVLWGN 283 (409)
Q Consensus 207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 283 (409)
++++|+++++..+++.+..+... +.++..+.+.+.+. .+++.+.+.+.. .. ...+...+....++ ..
T Consensus 264 i~~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~-----~~ 333 (567)
T PTZ00367 264 ILSYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPP-----AF 333 (567)
T ss_pred EEEEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCC-----cc
Confidence 99999999987776665433211 11223444444333 345555443322 11 12233334433322 24
Q ss_pred cCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHH----HHHHHhh
Q 015331 284 ISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLK----RYATERR 359 (409)
Q Consensus 284 ~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~y~~~r~ 359 (409)
+..++++|+|||||.++|++|||+|+||+||..|++.|....... ..+..+...++++|+ +|+++|+
T Consensus 334 ~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~---------~~d~~d~~~v~~aL~~~~~~Y~~~Rk 404 (567)
T PTZ00367 334 PSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLR---------SIDQNEMAEIEDAIQAAILSYARNRK 404 (567)
T ss_pred CCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhccc---------CCCchhHHHHHHHHHHhHHHHHHHhh
Confidence 567899999999999999999999999999999999998643210 001111224566677 9999999
Q ss_pred hhHHHHHHHhHHhcc--chhHHHHHHHHHHHHHh
Q 015331 360 WRSCELISMAYIVGY--DGKIINFLRDKIFSVLL 391 (409)
Q Consensus 360 ~~~~~~~~~s~~~~~--~~~~~~~~r~~~~~~~~ 391 (409)
+++..+...|..... .. ..+|+..|.++.
T Consensus 405 ~~a~~i~~ls~aL~~lf~~---~~lr~~~~~y~~ 435 (567)
T PTZ00367 405 THASTINILSWALYSVFSS---PALRDACLDYFS 435 (567)
T ss_pred hhHHHHHHHHHHHHHHhCh---HHHHHHHHHHHh
Confidence 999999999977765 22 568888888654
No 40
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=1e-39 Score=309.19 Aligned_cols=358 Identities=18% Similarity=0.211 Sum_probs=238.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc--CCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL--RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
.+||+||||||+|+++|+.|+++|++|+|||+.+.+ ....++..++++++++|+++|+++++...+.+.....+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~- 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD- 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC-
Confidence 479999999999999999999999999999999863 22334555899999999999999999887777777766532
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEE-eCCeEEEEEc-CCC--EEecCEEE
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEE-SGLFKLVNLA-DGA--VFKTKVLI 155 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~-~~~~~~v~~~-~g~--~~~ad~vV 155 (409)
+. ...+.+..... ........+..+.+.|.+.+. ++.++++++++.+.. +++.+.|++. +|+ ++++|+||
T Consensus 81 -~~-~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI 156 (390)
T TIGR02360 81 -GQ-RFRIDLKALTG--GKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA 156 (390)
T ss_pred -CE-EEEEeccccCC--CceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence 21 23333332211 111113356677777777553 578899998888755 5556677775 775 68999999
Q ss_pred EcCCCchHhHhHhCCCCCc-ccCc--eeEEEeeecCccCCCccccceeecCceEEEEEecCCCe-EEEEEEEcCCCCCCC
Q 015331 156 GCDGVNSVVAKWLGFKKPA-FAGR--SDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQT-VYWFFNWCPSNQDKE 231 (409)
Q Consensus 156 ~AdG~~s~vr~~lg~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~ 231 (409)
+|||.+|.+|+.++..... +.+. ..+.++..... ... ....+...+..+.++|+.++. ..|++.+......
T Consensus 157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 231 (390)
T TIGR02360 157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP--PVS-HELIYSNHERGFALCSMRSATRSRYYVQVPLTDKV-- 231 (390)
T ss_pred ECCCCchhhHHhcCcccceeeeccCCcceEEEecCCC--CCC-CceEEEeCCCceEEEeccCCCcceEEEEcCCCCCh--
Confidence 9999999999998654321 2222 23344332111 111 112344445556677775432 2354444322211
Q ss_pred CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331 232 LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL 311 (409)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al 311 (409)
.....+.+.+.+.+.+ .+.+.+.+...........++. ....++|..+|++|+|||||.++|+.|||+|+||
T Consensus 232 ~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~ai 303 (390)
T TIGR02360 232 EDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPLR-----SFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA 303 (390)
T ss_pred hhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeHH-----hhccccCccCCEEEEEccccCCCCCcCCchhHHH
Confidence 1222333455555544 3344433332211111122221 2234567889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-------chhHHHHHHH
Q 015331 312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-------DGKIINFLRD 384 (409)
Q Consensus 312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-------~~~~~~~~r~ 384 (409)
+||..|+++|...... ..+.+|+.|+++|++++..+++.|+.++. ...+...++.
T Consensus 304 eDA~~La~~L~~~~~~------------------~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 365 (390)
T TIGR02360 304 SDVHYLYEALLEHYQE------------------GSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQ 365 (390)
T ss_pred HHHHHHHHHHHHHhcc------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 9999999999875432 56789999999999999999999988754 4677777788
Q ss_pred HHHHHHhhhhhhh
Q 015331 385 KIFSVLLGRLMMK 397 (409)
Q Consensus 385 ~~~~~~~~~~~~~ 397 (409)
+-|..++......
T Consensus 366 ~~~~~~~~~~~~~ 378 (390)
T TIGR02360 366 AELEYLLGSEAAQ 378 (390)
T ss_pred HHHHHHhCCHHHH
Confidence 8888887776653
No 41
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=2.1e-39 Score=314.26 Aligned_cols=361 Identities=20% Similarity=0.191 Sum_probs=242.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhh-cccccCeEEEecc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGMVVASSV 81 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~~~~~~ 81 (409)
..+||+||||||+|+++|+.|+++|++|+|+||.+.....+.+..+++++.+.|+++|+++.+... ..+..+..++.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~-- 119 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK-- 119 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE--
Confidence 357999999999999999999999999999999876555667899999999999999999988764 34555555543
Q ss_pred CCcccccccccccC--CCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe---EEEEEcCCC--EEec
Q 015331 82 SCQPASEISFKTKG--NRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF---KLVNLADGA--VFKT 151 (409)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~---~~v~~~~g~--~~~a 151 (409)
++.. ...+++... .......+.++|.+|.+.|.+++ ++++++.+ +++++..+++. +++...+|+ +++|
T Consensus 120 ~g~~-~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A 197 (514)
T PLN02985 120 DGKE-AVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA 197 (514)
T ss_pred CCEE-EEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence 2322 122332111 11122345789999999999865 35777766 56666555443 334444665 4579
Q ss_pred CEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCC
Q 015331 152 KVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKE 231 (409)
Q Consensus 152 d~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (409)
|+||+|||.+|.+|+.++...... .....++.......+.......+++++..+.++|+++++..+.+....+...
T Consensus 198 dLVVgADG~~S~vR~~l~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~-- 273 (514)
T PLN02985 198 PLTVVCDGCYSNLRRSLNDNNAEV--LSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIP-- 273 (514)
T ss_pred CEEEECCCCchHHHHHhccCCCcc--eeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCC--
Confidence 999999999999999997654321 1112222211111122223345567777788999998887666655433221
Q ss_pred CCCChhHHHHHHHHHh-cCCCHHHHHHHHcC-C-CCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhh
Q 015331 232 LEGNPDKTKQFVLSKC-HDLPEQVKAIVENT-P-LDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGC 308 (409)
Q Consensus 232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~ 308 (409)
+....+..+++.+.. ...++.+.+.+... . ...+...+....+ ...+..++++|+|||||.++|++|||||
T Consensus 274 -~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~-----~~~~~~~~vvLiGDAaH~~~P~~GQGmn 347 (514)
T PLN02985 274 -SIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMS-----ATLSDKKGVIVLGDAFNMRHPAIASGMM 347 (514)
T ss_pred -CcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCccccc-----ccccCCCCEEEEecccccCCCCccccHh
Confidence 112334444444433 24455555554321 1 1123233332221 1234568999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-----chhHHHHHH
Q 015331 309 AALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-----DGKIINFLR 383 (409)
Q Consensus 309 ~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-----~~~~~~~~r 383 (409)
+|++||..|++.|...-.- .+.....++|++|+++|++++..+..+|..+.. .+.....+|
T Consensus 348 ~AleDA~vLa~lL~~~~~~--------------~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~ 413 (514)
T PLN02985 348 VLLSDILILRRLLQPLSNL--------------GNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMR 413 (514)
T ss_pred HHHHHHHHHHHHhhhcccc--------------cchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999873210 013367899999999999999999999977754 456678899
Q ss_pred HHHHHHHh
Q 015331 384 DKIFSVLL 391 (409)
Q Consensus 384 ~~~~~~~~ 391 (409)
+..|.++.
T Consensus 414 ~~~f~y~~ 421 (514)
T PLN02985 414 QGCYDYLC 421 (514)
T ss_pred HHHHHHHH
Confidence 99998654
No 42
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=2e-40 Score=315.59 Aligned_cols=359 Identities=21% Similarity=0.208 Sum_probs=245.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-----ceeEEechhHHHHHHHcCCchHHHhh-cccccCeE
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-----GFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGMV 76 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~ 76 (409)
+++||+||||||+|+++|+.|++.|++|+|+|+.+.+... .+.+.++++++++|+++|+++.+... ..+.....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 3589999999999999999999999999999999876542 34588999999999999999887543 23444555
Q ss_pred EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--C-CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCE
Q 015331 77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--S-GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKV 153 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~-~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~ 153 (409)
++.... ..+.+.......+...+.+++..+.+.|.+.+. + ++++ +++|++++.+++.+.|++.+|.+++||+
T Consensus 84 ~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 158 (388)
T PRK07608 84 VFGDAH----ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL 158 (388)
T ss_pred EEECCC----ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence 543221 222322222222333457889999999988663 3 6677 9999999988888999999988899999
Q ss_pred EEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331 154 LIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL 232 (409)
Q Consensus 154 vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
||+|||.+|.+|+.++...... +...++...+..+. ........++.++..++++|+.++...+.+...........
T Consensus 159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 236 (388)
T PRK07608 159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER--PHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELL 236 (388)
T ss_pred EEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC--CCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHH
Confidence 9999999999999998765432 22333333333222 11222334456666788999999876554433221111111
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331 233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~ 312 (409)
..+++++.+.+.+.... .+. .++.. .....+++.. ...++|..+||+++|||||.++|++|||+|+||+
T Consensus 237 ~~~~~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~~~-----~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~ 305 (388)
T PRK07608 237 ALSPEALAARVERASGG---RLG-RLECV--TPAAGFPLRL-----QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLR 305 (388)
T ss_pred CCCHHHHHHHHHHHHHH---hcC-Cceec--CCcceeecch-----hhhhhhhcCceEEEeccccccCCccccccchhHH
Confidence 22444454444443321 110 11110 0111122221 2234778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHH
Q 015331 313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFS 388 (409)
Q Consensus 313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~ 388 (409)
||..|+++|....... .....++|++|+++|++++..++..++..+. .+.....+|+..+.
T Consensus 306 da~~La~~L~~~~~~~---------------~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 370 (388)
T PRK07608 306 DVAALADVLAGREPFR---------------DLGDLRLLRRYERARREDILALQVATDGLQRLFALPGPLARWLRNAGMA 370 (388)
T ss_pred HHHHHHHHHHHhhccC---------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 9999999998754211 0123479999999999999999999876655 67788899999998
Q ss_pred HHhhhh
Q 015331 389 VLLGRL 394 (409)
Q Consensus 389 ~~~~~~ 394 (409)
.+..-.
T Consensus 371 ~~~~~~ 376 (388)
T PRK07608 371 LVGALP 376 (388)
T ss_pred HHhhCh
Confidence 665433
No 43
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.9e-40 Score=314.46 Aligned_cols=360 Identities=19% Similarity=0.169 Sum_probs=245.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCcc-----CCcceeEEechhHHHHHHHcCCchHHHhhcccccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESL-----RVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQG 74 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~-----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~ 74 (409)
+++||+||||||+|+++|+.|+++ |++|+||||.... ...++++.+++++.++|+++|+++.+.+.+.+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 568999999999999999999998 9999999995321 22357899999999999999999999887766655
Q ss_pred eEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEec
Q 015331 75 MVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKT 151 (409)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~a 151 (409)
..+..... .....+.......+...+.++|..+.+.|.+.+ ++++++++++|++++.+++.+.|+++++.++.+
T Consensus 82 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a 158 (395)
T PRK05732 82 IHVSDRGH---AGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTG 158 (395)
T ss_pred EEEecCCC---CceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 54432211 111111111111122234678888888887754 367999999999999888889999999888999
Q ss_pred CEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCC
Q 015331 152 KVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDK 230 (409)
Q Consensus 152 d~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 230 (409)
|+||+|||.+|.+|+.++...... .+..++...+..... .....+..+.. +..++++|.++++..+++.+..+....
T Consensus 159 ~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~~~~p~~~g~~~~~~~~~~~~~~~ 236 (395)
T PRK05732 159 RLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA-HQGRAFERFTE-HGPLALLPMSDGRCSLVWCHPLEDAEE 236 (395)
T ss_pred CEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC-CCCEEEEeecC-CCCEEEeECCCCCeEEEEECCHHHHHH
Confidence 999999999999999998764433 344444444332211 11122223333 335778999998866555443221111
Q ss_pred CCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhH
Q 015331 231 ELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAA 310 (409)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~a 310 (409)
....+.+.+.+.+.+.+. .....+.. ......+++... ...+|..+|++|+|||||.++|++|||+|+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~l~~~-----~~~~~~~grv~LvGDAAh~~~P~~GqG~~~a 305 (395)
T PRK05732 237 VLSWSDAQFLAELQQAFG---WRLGRITH---AGKRSAYPLALV-----TAAQQISHRLALVGNAAQTLHPIAGQGFNLG 305 (395)
T ss_pred HHcCCHHHHHHHHHHHHH---hhhcceee---cCCcceeccccc-----chhhhccCcEEEEeecccccCCccccccchH
Confidence 012233344444444331 11111111 111112222221 2235678999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHH
Q 015331 311 LEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKI 386 (409)
Q Consensus 311 l~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~ 386 (409)
|+||..|++.|..++.+. . ....+++|+.|+++|+++...++..+..... ...+...+|+..
T Consensus 306 l~Da~~La~~L~~~~~~~----------~----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 371 (395)
T PRK05732 306 LRDVMSLAETLTQALARG----------E----DIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLG 371 (395)
T ss_pred HHHHHHHHHHHHHHHhcC----------C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 999999999998876431 0 0123589999999999999999999877654 557888999999
Q ss_pred HHHHhh
Q 015331 387 FSVLLG 392 (409)
Q Consensus 387 ~~~~~~ 392 (409)
++.+..
T Consensus 372 ~~~~~~ 377 (395)
T PRK05732 372 LMAMDL 377 (395)
T ss_pred HHHHcc
Confidence 986665
No 44
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=3e-39 Score=319.61 Aligned_cols=338 Identities=21% Similarity=0.290 Sum_probs=230.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhccccc---CeEEEe
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQ---GMVVAS 79 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~---~~~~~~ 79 (409)
.++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+++.+.+.+.. ...+..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~ 85 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT 85 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence 46899999999999999999999999999999998887778899999999999999999999988765431 222222
Q ss_pred ccCCcccccccccccCC------------CCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEc
Q 015331 80 SVSCQPASEISFKTKGN------------RGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLA 144 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~------------~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~ 144 (409)
...+..+..+.+..... ..+.....+++..+++.|.+.+ ++++++++++|++++.+++++++++.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~ 165 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVE 165 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEE
Confidence 22333333332221100 1122345688999999998765 46899999999999998887777664
Q ss_pred C---CC--EEecCEEEEcCCCchHhHhHhCCCCCcccCc-eeEEEeeecCc---cCCCcccccee-ecCceEEEEEecCC
Q 015331 145 D---GA--VFKTKVLIGCDGVNSVVAKWLGFKKPAFAGR-SDIRGCTDFKL---RHGLEPKFQQF-LGKGFRYGFLPCND 214 (409)
Q Consensus 145 ~---g~--~~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~p~~~ 214 (409)
+ |+ ++++|+||+|||.+|.+|+.+++........ ..+..++..+. .......+.++ .+++....++|..+
T Consensus 166 ~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 245 (545)
T PRK06126 166 DLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDG 245 (545)
T ss_pred ECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECC
Confidence 3 53 6899999999999999999998765433221 11222232221 11112223333 34444455566654
Q ss_pred CeEEEEEE-EcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEec
Q 015331 215 QTVYWFFN-WCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAG 293 (409)
Q Consensus 215 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvG 293 (409)
+. .|.+. +.+... ....+++.+.+.+.+.+. ..+...+ .....+. ......++|..+||+|+|
T Consensus 246 ~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~i-----~~~~~w~-----~~~~~a~~~~~gRv~L~G 309 (545)
T PRK06126 246 RD-EWLFHQLRGGED--EFTIDDVDARAFVRRGVG---EDIDYEV-----LSVVPWT-----GRRLVADSYRRGRVFLAG 309 (545)
T ss_pred CC-eEEEEEecCCCC--CCCCCHHHHHHHHHHhcC---CCCCeEE-----Eeecccc-----hhheehhhhccCCEEEec
Confidence 43 34443 322221 123345556666665553 1110000 0001111 112345578899999999
Q ss_pred cCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhc
Q 015331 294 DAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVG 373 (409)
Q Consensus 294 DAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 373 (409)
||||.++|+.|||+|+||+||..|++.|...+++. ..+++|+.|+++|++++..+++.+..+.
T Consensus 310 DAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~-----------------~~~~lL~~Y~~eR~p~~~~~~~~s~~~~ 372 (545)
T PRK06126 310 DAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW-----------------AGPALLDSYEAERRPIAARNTDYARRNA 372 (545)
T ss_pred hhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC-----------------CcHHHHhhhHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877642 4578999999999999999999987654
No 45
>PRK11445 putative oxidoreductase; Provisional
Probab=100.00 E-value=2e-32 Score=255.95 Aligned_cols=328 Identities=17% Similarity=0.109 Sum_probs=198.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC----CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR----VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+||+||||||||+++|+.|+++ ++|+|+|+.+.+. ...|+..+++++.+.|+++|++........+. ....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~--- 76 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAV--- 76 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-ccee---
Confidence 7999999999999999999999 9999999987543 23478899999999999999863211100000 0000
Q ss_pred cCCccccccccccc-CCCCCccccccCHHHHHHHHHhhC-CCCeEEeCceEEEEEEeCCeEEEEE-cCCC--EEecCEEE
Q 015331 81 VSCQPASEISFKTK-GNRGGHEVRSVKRSLLMEALEREL-PSGTIRYSSKVVSVEESGLFKLVNL-ADGA--VFKTKVLI 155 (409)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~l~~~~-~~~~i~~~~~v~~v~~~~~~~~v~~-~~g~--~~~ad~vV 155 (409)
..+..... ........+.++|..|.+.|.+.. .++++++++.|+.++.+++++.|.+ .+|+ +++||+||
T Consensus 77 ------~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV 150 (351)
T PRK11445 77 ------KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLV 150 (351)
T ss_pred ------eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEE
Confidence 01111100 001112234699999999998765 3689999999999998888888876 4564 68999999
Q ss_pred EcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceee---cCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331 156 GCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFL---GKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL 232 (409)
Q Consensus 156 ~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
+|||.+|.+|+.++.... .....++..++..... .+.+..++ ..+.+.|.+|..+... ....+ +.
T Consensus 151 ~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~W~~p~~~~~~-~g~~~-~~------ 218 (351)
T PRK11445 151 GADGANSMVRRHLYPDHQ-IRKYVAIQQWFAEKHP---VPFYSCIFDNEITDCYSWSISKDGYFI-FGGAY-PM------ 218 (351)
T ss_pred ECCCCCcHHhHHhcCCCc-hhhEEEEEEEecCCCC---CCCcceEEeccCCCceEEEeCCCCcEE-ecccc-cc------
Confidence 999999999999865422 1222222322222211 11121221 1234677888765422 11111 11
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331 233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~ 312 (409)
. +.....+.+.+.+.+....+.+.++.. ....+. ..++. ......+|+++||||||.++|++|+|++.|++
T Consensus 219 ~-~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~~~~-~~~~~--~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~ 289 (351)
T PRK11445 219 K-DGRERFETLKEKLSAFGFQFGKPVKTE-----ACTVLR-PSRWQ--DFVCGKDNAFLIGEAAGFISPSSLEGISYALD 289 (351)
T ss_pred c-chHHHHHHHHHHHHhcccccccccccc-----cccccC-ccccc--ccccCCCCEEEEEcccCccCCccCccHHHHHH
Confidence 0 111112222222222111111111110 001110 01111 00123589999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc-chhHHHHHHHHHHHH
Q 015331 313 DGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY-DGKIINFLRDKIFSV 389 (409)
Q Consensus 313 da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~-~~~~~~~~r~~~~~~ 389 (409)
|+..|++.|.+.. +..++.|++.++.-..++..- .. . +..+..++|.++|+.
T Consensus 290 sa~~la~~l~~~~----------------------~~~~~~y~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~ 342 (351)
T PRK11445 290 SARILSEVLNKQP----------------------EKLNTAYWRKTRKLRLKLFGK--IL-KSPFMYNPALRKLIMRS 342 (351)
T ss_pred hHHHHHHHHHhcc----------------------cchHHHHHHHHHHHHHHHHHH--Hh-cChhhhhHHHHHHHHHh
Confidence 9999999998732 456889998877766443322 22 2 555566777777764
No 46
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=100.00 E-value=5.9e-33 Score=254.56 Aligned_cols=288 Identities=23% Similarity=0.242 Sum_probs=186.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+||||||+|+++|+.|+++|++|+|+|+.+.++...++..+.+.+.+.+...+.. .........++.. .+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~-~~~ 74 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-----IVNLVRGARFFSP-NGD 74 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-----hhhheeeEEEEcC-CCc
Confidence 6999999999999999999999999999999987766667788888777766554321 1111223333322 221
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcCCCc
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~ 161 (409)
.. ..... ....+.++|..+.+.|.+.+. +++++++++|+++..+++.+.+.+.++ .++++|+||+|+|.+
T Consensus 75 ~~-~~~~~------~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 75 SV-EIPIE------TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EE-EeccC------CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 11 11111 223457899999999998764 689999999999998888877766544 579999999999999
Q ss_pred hHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeec----CceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChh
Q 015331 162 SVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLG----KGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPD 237 (409)
Q Consensus 162 s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
|.+++.++...........+...+..+...........+.+ ++.+.+++|.+++++.+.+...... ...+.
T Consensus 148 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~- 222 (295)
T TIGR02032 148 SIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDL- 222 (295)
T ss_pred hHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCH-
Confidence 99999987664322222233333333221111122223332 3467899999998766655443322 12223
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHH
Q 015331 238 KTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIIL 317 (409)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~L 317 (409)
.+.+.+.+...+. +..........+.++... ...++..+||+++|||||+++|++|||+|+||+||..+
T Consensus 223 --~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~----~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~a 291 (295)
T TIGR02032 223 --KKYLKDFLARRPE-----LKDAETVEVIGAPIPIGR----PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVA 291 (295)
T ss_pred --HHHHHHHHHhCcc-----cccCcEEeeeceeeccCC----CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHH
Confidence 3333333322221 111111111222222222 23366789999999999999999999999999999999
Q ss_pred HHHH
Q 015331 318 ARCI 321 (409)
Q Consensus 318 a~~l 321 (409)
|++|
T Consensus 292 a~~~ 295 (295)
T TIGR02032 292 AEVI 295 (295)
T ss_pred HhhC
Confidence 9864
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=8.8e-32 Score=255.37 Aligned_cols=312 Identities=19% Similarity=0.216 Sum_probs=198.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+||||||||+++|+.|+++|++|+|+|+.. +....|+..+++ ..++++++.+++... .+.+..++.+.+ .
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~~-~ 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISPSR-V 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcCCC-c
Confidence 699999999999999999999999999999982 223346666665 567788888776543 455566654432 1
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcC------C--CEEecCEE
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLAD------G--AVFKTKVL 154 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~------g--~~~~ad~v 154 (409)
. .....+. ...+ ...++|..|++.|.+++. +++++.+ +|+++..+++.+.|++.+ + .+++||+|
T Consensus 74 ~-~~~~~~~---~~~~-~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 74 P-IKVTIPS---EDGY-VGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVV 147 (388)
T ss_pred e-eeeccCC---CCCc-eEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEE
Confidence 1 1111110 0111 125899999999998763 6788655 699998888888887653 2 36899999
Q ss_pred EEcCCCchHhHhHhCCCCCcccCceeEEEeeecCcc-CCCccc-cceee----cCceEEEEEecCCCeEEEEEEEcCCCC
Q 015331 155 IGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLR-HGLEPK-FQQFL----GKGFRYGFLPCNDQTVYWFFNWCPSNQ 228 (409)
Q Consensus 155 V~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~ 228 (409)
|+|||.+|.+|+.++..... ....++...+..+.. ....+. ...++ .++.+.|++|.++. .........
T Consensus 148 I~AdG~~S~v~r~lg~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~~~--- 222 (388)
T TIGR02023 148 IGADGANSPVAKELGLPKNL-PRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGTGT--- 222 (388)
T ss_pred EECCCCCcHHHHHcCCCCCC-cEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEECC---
Confidence 99999999999999876422 112233333322221 111222 22222 34567899999754 333322111
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhh
Q 015331 229 DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGC 308 (409)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~ 308 (409)
...+.+++.+.+.+.+. + ...+.......+++.. ..+++..++++++|||||.++|++|+|++
T Consensus 223 ---~~~~~~~~~~~l~~~~~-~--------~~~~~~~~~~~~ip~~-----~~~~~~~~~v~lvGDAAg~v~P~tG~GI~ 285 (388)
T TIGR02023 223 ---HGFDAKQLQANLRRRAG-L--------DGGQTIRREAAPIPMK-----PRPRWDFGRAMLVGDAAGLVTPASGEGIY 285 (388)
T ss_pred ---CCCCHHHHHHHHHHhhC-C--------CCceEeeeeeEecccc-----ccccccCCCEEEEeccccCcCCcccccHH
Confidence 12234444444444321 1 0000011111122221 12356678999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331 309 AALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA 369 (409)
Q Consensus 309 ~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s 369 (409)
.||++|..+++.+.+++..+ ..+.|++|+++++.........+
T Consensus 286 ~A~~sg~~aa~~i~~~l~~~------------------~~~~L~~Y~~~~~~~~~~~~~~~ 328 (388)
T TIGR02023 286 FAMKSGQMAAQAIAEYLQNG------------------DATDLRHYERKFMKLYGTTFRVL 328 (388)
T ss_pred HHHHHHHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987641 25679999998887665444443
No 48
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.6e-31 Score=255.48 Aligned_cols=320 Identities=15% Similarity=0.151 Sum_probs=196.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.++||+||||||||+++|+.|+++|++|+|+|+... ....|+..++ ...++++|+++.+... ++.+..++.+.+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~---~~~l~~lgl~~~~~~~--~i~~~~~~~p~~ 111 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIP---LCMVGEFDLPLDIIDR--KVTKMKMISPSN 111 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCcccccc---HhHHhhhcCcHHHHHH--HhhhheEecCCc
Confidence 358999999999999999999999999999999864 3344666665 4667888888766542 344555543322
Q ss_pred CcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe---CCeEEEEEcC-------C--CE
Q 015331 83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEES---GLFKLVNLAD-------G--AV 148 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~---~~~~~v~~~~-------g--~~ 148 (409)
. .+.+...... .....+++|..|++.|.+++. +++++.+ ++.+++.. ++.+.|++.+ | .+
T Consensus 112 ~----~v~~~~~~~~-~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~ 185 (450)
T PLN00093 112 V----AVDIGKTLKP-HEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT 185 (450)
T ss_pred e----EEEecccCCC-CCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence 1 2222211111 112235899999999998663 6788765 57777642 3445665532 3 47
Q ss_pred EecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCcc-CCCcc-ccceeec----CceEEEEEecCCCeEEEEEE
Q 015331 149 FKTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLR-HGLEP-KFQQFLG----KGFRYGFLPCNDQTVYWFFN 222 (409)
Q Consensus 149 ~~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~----~~~~~~~~p~~~~~~~~~~~ 222 (409)
++||+||+|||.+|.+|+.++.... ....++...+..+.. ..... ....+++ ++.+.|++|.++. ....+.
T Consensus 186 v~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~g 262 (450)
T PLN00093 186 LEVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTG 262 (450)
T ss_pred EEeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEEE
Confidence 9999999999999999999987532 122222222223221 11112 2233333 5567899999854 333332
Q ss_pred EcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCC
Q 015331 223 WCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPD 302 (409)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~ 302 (409)
.... ..+...+.+.+.+.+. ..+...+.......+++... ..++..++++|+|||||.++|+
T Consensus 263 ~~~~------~~~~~~~~~~l~~~~~-------~~l~~~~~~~~~~~~ip~~~-----~~~~~~~~vlLvGDAAg~v~P~ 324 (450)
T PLN00093 263 TVVN------KPAIKKYQRATRNRAK-------DKIAGGKIIRVEAHPIPEHP-----RPRRVRGRVALVGDAAGYVTKC 324 (450)
T ss_pred EccC------CCChHHHHHHHHHHhh-------hhcCCCeEEEEEEEEccccc-----ccceeCCCcEEEeccccCCCcc
Confidence 2111 1122233333332211 11111111122233333321 2255688999999999999999
Q ss_pred CcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331 303 IGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA 369 (409)
Q Consensus 303 ~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s 369 (409)
+|+|++.||.++..+++.+.+++..+ +.+.....|++|+++++.........+
T Consensus 325 tGeGI~~Am~sg~~AAe~i~~~~~~g--------------~~~~s~~~L~~Y~~~~~~~~g~~~~~~ 377 (450)
T PLN00093 325 SGEGIYFAAKSGRMCAEAIVEGSENG--------------TRMVDEADLREYLRKWDKKYWPTYKVL 377 (450)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcC--------------CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987541 011235678999987776554444443
No 49
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=1.7e-31 Score=271.47 Aligned_cols=320 Identities=19% Similarity=0.188 Sum_probs=205.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcC--CchHHHhhcccccCeEEEec
Q 015331 5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVG--ISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~~~~~~~~~~ 80 (409)
++|+||||||+||++|+.|+++ |++|+|+|+.+.....|+++.+++++++.|+.++ +...+...........+..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF- 79 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE-
Confidence 3899999999999999999998 8999999999887777899999999998888775 2233333222222333321
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD 158 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (409)
.+... .. .+.....++|..|.+.|.+++. +++++++++|++++.. ..++|+||+||
T Consensus 80 -~g~~~-----~~----~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgAD 137 (765)
T PRK08255 80 -KGRRI-----RS----GGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASD 137 (765)
T ss_pred -CCEEE-----EE----CCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcC
Confidence 11110 00 1122336899999999998764 6899999998776421 25799999999
Q ss_pred CCchHhHhHhCCC--CCcccCceeEEEeeecCccCCCccc-cc-eeecCce-EEEEEecCCCeEEEEEEEcCCCCC--CC
Q 015331 159 GVNSVVAKWLGFK--KPAFAGRSDIRGCTDFKLRHGLEPK-FQ-QFLGKGF-RYGFLPCNDQTVYWFFNWCPSNQD--KE 231 (409)
Q Consensus 159 G~~s~vr~~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~--~~ 231 (409)
|.+|.+|+.+... .........+..+ .... .+... +. .....+. ....+|..++..+|++.+..+... ..
T Consensus 138 G~~S~vR~~~~~~~~~~~~~~~~~~~w~-g~~~--~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 214 (765)
T PRK08255 138 GLNSRIRTRYADTFQPDIDTRRCRFVWL-GTHK--VFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGL 214 (765)
T ss_pred CCCHHHHHHHHhhcCCceecCCCceEEe-cCCC--cccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCC
Confidence 9999999976321 1111111111111 1111 01110 00 0012221 234578777766666655322111 11
Q ss_pred CCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCc----EEEeccCCCCCCCCCcchh
Q 015331 232 LEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGN----VCVAGDAFHPMTPDIGQGG 307 (409)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~lvGDAA~~~~P~~G~G~ 307 (409)
...+.+...+.+.+.|..+.+.. .++..........+.... .....+|..++ ++|+|||||.++|+.|||+
T Consensus 215 ~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~----~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~ 289 (765)
T PRK08255 215 DEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFP----RVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGT 289 (765)
T ss_pred ccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecc----eeccCCCccCCCcccEEEEEcCcccCCCCcchhH
Confidence 22345566777777776654432 222221110101111111 11234777888 9999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc
Q 015331 308 CAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIVGY 374 (409)
Q Consensus 308 ~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 374 (409)
|+||+||..|+++|.... ...+++|+.|+++|++++..+++.|+..+.
T Consensus 290 ~~aieDa~~La~~L~~~~-------------------~~~~~al~~ye~~R~~r~~~~~~~s~~~~~ 337 (765)
T PRK08255 290 KLALEDAIELARCLHEHP-------------------GDLPAALAAYEEERRVEVLRIQNAARNSTE 337 (765)
T ss_pred HHHHHHHHHHHHHHHHcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999998731 157899999999999999999999987654
No 50
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=1.4e-30 Score=246.94 Aligned_cols=318 Identities=17% Similarity=0.145 Sum_probs=191.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+||||||||+++|+.|+++|++|+|+||...+ ...|+..++ ...++++|+++++... .+.+..++.+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~---~~~l~~~g~~~~~~~~--~i~~~~~~~p~~-- 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIP---LCMVDEFALPRDIIDR--RVTKMKMISPSN-- 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCcccccc---HhhHhhccCchhHHHh--hhceeEEecCCc--
Confidence 58999999999999999999999999999997643 344666664 3667888888765442 344444443321
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEE---eCCeEEEEE--cC-----C--CEEe
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEE---SGLFKLVNL--AD-----G--AVFK 150 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~---~~~~~~v~~--~~-----g--~~~~ 150 (409)
..+.+........+ ...++|..|++.|.+++. +++++.++ +.+++. .++.+.|++ .+ | .+++
T Consensus 73 --~~~~~~~~~~~~~~-~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~ 148 (398)
T TIGR02028 73 --IAVDIGRTLKEHEY-IGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLE 148 (398)
T ss_pred --eEEEeccCCCCCCc-eeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEE
Confidence 11222111111111 136899999999998763 67887774 767643 234455553 22 2 3789
Q ss_pred cCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccC-CCcc-ccceeec----CceEEEEEecCCCeEEEEEEEc
Q 015331 151 TKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRH-GLEP-KFQQFLG----KGFRYGFLPCNDQTVYWFFNWC 224 (409)
Q Consensus 151 ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~ 224 (409)
|++||+|||.+|.+|+.++.... .....+...+..+... .... ....+++ ++.+.|++|.++. ....+...
T Consensus 149 a~~VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~ 225 (398)
T TIGR02028 149 VDAVIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTV 225 (398)
T ss_pred eCEEEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeC
Confidence 99999999999999999986532 1122222222332221 1112 2223332 5567999999854 33333221
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCc
Q 015331 225 PSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIG 304 (409)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G 304 (409)
. ..... +.+.+.+... ....+...........+++... .+.+..++++++|||||.++|++|
T Consensus 226 -~-----~~~~~----~~~~~~l~~~---~~~~~~~~~~~~~~~~~ip~~~-----~~~~~~~~~llvGDAAg~v~P~tG 287 (398)
T TIGR02028 226 -A-----AKPEI----KRLQSGIRAR---AAGKVAGGRIIRVEAHPIPEHP-----RPRRVVGRVALVGDAAGYVTKCSG 287 (398)
T ss_pred -C-----CCccH----HHHHHhhhhh---hhhccCCCcEEEEEEEeccccc-----cccEECCCEEEEEcCCCCCCcccc
Confidence 1 01112 2233322110 0011111111122233333321 125567899999999999999999
Q ss_pred chhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331 305 QGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA 369 (409)
Q Consensus 305 ~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s 369 (409)
+|++.||+++..+++.+.+++..+ .....+..|++|+++.+.........+
T Consensus 288 eGI~~A~~sg~~aa~~i~~~~~~~--------------~~~~~~~~l~~Y~~~~~~~~~~~~~~~ 338 (398)
T TIGR02028 288 EGIYFAAKSGRMCAEAIVEESRLG--------------GAVTEEGDLAGYLRRWDKEYRPTYRVL 338 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcC--------------CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987642 001245678999987766444433333
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=3e-30 Score=244.92 Aligned_cols=322 Identities=21% Similarity=0.176 Sum_probs=205.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCccee-EEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFA-ITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
.++||+||||||||++||+.|++.|++|+|+||.+.++...++ ..+.+..+ +++....... ....+....++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l---~~l~~~~~~~-i~~~v~~~~~~~~- 76 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRAL---EELIPDFDEE-IERKVTGARIYFP- 76 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhH---HHhCCCcchh-hheeeeeeEEEec-
Confidence 4689999999999999999999999999999999988765444 55555444 3332221111 2233334444333
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcC
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCD 158 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~Ad 158 (409)
.... .+..+. ...+.++|..|+++|.+.+. +++++.++++..+..+++.+.+.+..+ .++++++||+||
T Consensus 77 ~~~~--~~~~~~------~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~Ad 148 (396)
T COG0644 77 GEKV--AIEVPV------GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDAD 148 (396)
T ss_pred CCce--EEecCC------CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECC
Confidence 1111 111111 23568999999999998764 689999999999998887766555444 689999999999
Q ss_pred CCchHhHhHhCCCCCc-ccCceeEEEeeecCccCCCcccccee---ecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCC
Q 015331 159 GVNSVVAKWLGFKKPA-FAGRSDIRGCTDFKLRHGLEPKFQQF---LGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEG 234 (409)
Q Consensus 159 G~~s~vr~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 234 (409)
|.+|.+++.++..... ......+......+. ......+..+ ..++.+.|++|..++.....+...... .. ...
T Consensus 149 G~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~-~~~ 225 (396)
T COG0644 149 GVNSALARKLGLKDRKPEDYAIGVKEVIEVPD-DGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PS-LSP 225 (396)
T ss_pred CcchHHHHHhCCCCCChhheeEEeEEEEecCC-CCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cC-CCc
Confidence 9999999999888111 111222222333331 1111111111 355678999999999877777665444 11 111
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccc-cCCCcEEEeccCCCCCCCCCcchhhhHhhH
Q 015331 235 NPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGN-ISKGNVCVAGDAFHPMTPDIGQGGCAALED 313 (409)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~lvGDAA~~~~P~~G~G~~~al~d 313 (409)
. . ...+.|...+ .....+......++....++...+.+ . +..+++++|||||++++|++|.|+..||.+
T Consensus 226 ~----~-~~l~~f~~~~-~~~~~~~~~~~~~~~~~~ip~~g~~~----~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~s 295 (396)
T COG0644 226 F----L-ELLERFKEHP-AIRKLLLGGKILEYAAGGIPEGGPAS----RPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKS 295 (396)
T ss_pred h----H-HHHHHHHhCc-ccchhccCCceEEEeeeecccCCcCC----CccccCCEEEEeccccCCCCcccCcHHHHHHH
Confidence 1 1 2222221111 11222221222333333333333222 3 578899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh
Q 015331 314 GIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA 369 (409)
Q Consensus 314 a~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s 369 (409)
|..+|+.+.++... . ++.|..|++..+.....-....
T Consensus 296 g~~Aa~~i~~~~~~------------------~-~~~l~~Y~~~~~~~~~~~~~~~ 332 (396)
T COG0644 296 GKLAAEAIAEALEG------------------G-EEALAEYERLLRKSLAREDLKS 332 (396)
T ss_pred HHHHHHHHHHHHHc------------------C-hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998764 2 6677778887776554444443
No 52
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.97 E-value=5.2e-29 Score=219.06 Aligned_cols=362 Identities=19% Similarity=0.181 Sum_probs=257.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhh-cccccCeEEEecc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQ-HIQLQGMVVASSV 81 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~~~~~~~~~ 81 (409)
...||+|||||.+|.++|+.|+|.|.+|+|+||+-....+--|..++|.+...|.++|+.|.++.. ..+..+..++.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk-- 121 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK-- 121 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe--
Confidence 357999999999999999999999999999999976656667889999999999999999988774 45566666654
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEE-EEeCCe--EEEEEcCCC--EEecCE
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSV-EESGLF--KLVNLADGA--VFKTKV 153 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v-~~~~~~--~~v~~~~g~--~~~ad~ 153 (409)
+++. ..++++.......+..+..+...|.+.|++.+ +++++..++ |.++ ++++-. ++++.++|+ +..|-+
T Consensus 122 ~gk~-v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~gvvkGV~yk~k~gee~~~~ApL 199 (509)
T KOG1298|consen 122 DGKE-VDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEEGVVKGVTYKNKEGEEVEAFAPL 199 (509)
T ss_pred CCce-eeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhccCeEEeEEEecCCCceEEEecce
Confidence 3322 45666665555566778889999999999865 577777664 4444 444422 333444444 567899
Q ss_pred EEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCC
Q 015331 154 LIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELE 233 (409)
Q Consensus 154 vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 233 (409)
-|+|||..|.+||.+-.+.... -..++.+++......+.....+.++++...+.++|++..+....+-+..+.-..
T Consensus 200 TvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Ps--- 275 (509)
T KOG1298|consen 200 TVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPS--- 275 (509)
T ss_pred EEEecchhHHHHHHhcCCcccc-cchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCc---
Confidence 9999999999999995433221 223345555433333445556667777777889999999888887776554322
Q ss_pred CChhHHHHHHHHHhc-CCCHHHHHHHHc-CCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHh
Q 015331 234 GNPDKTKQFVLSKCH-DLPEQVKAIVEN-TPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAAL 311 (409)
Q Consensus 234 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al 311 (409)
....+...++.+... ..++.+++.+.. .....+..-|.+..+ .+.....+++++|||...-||++|.||.-|+
T Consensus 276 i~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mp-----a~~~~~~G~illGDAfNMRHPltggGMtV~l 350 (509)
T KOG1298|consen 276 IANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMP-----ATLNDKKGVILLGDAFNMRHPLTGGGMTVAL 350 (509)
T ss_pred ccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCC-----CCcCCCCceEEEcccccccCCccCCceEeeh
Confidence 223345566666555 666666554443 333333333333332 2344678999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHhHHh--cc---chhHHHHHHHHH
Q 015331 312 EDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMAYIV--GY---DGKIINFLRDKI 386 (409)
Q Consensus 312 ~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~--~~---~~~~~~~~r~~~ 386 (409)
.|...|-+.|..... -.+.+.+.+.+++|...|++...-+-.++... .+ .+-....+|...
T Consensus 351 ~Di~lLr~ll~pl~d--------------L~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gC 416 (509)
T KOG1298|consen 351 SDIVLLRRLLKPLPD--------------LSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGC 416 (509)
T ss_pred hHHHHHHHHhccccc--------------cccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 999999999887322 22356888999999999999877766665333 33 677788889988
Q ss_pred HHHHh
Q 015331 387 FSVLL 391 (409)
Q Consensus 387 ~~~~~ 391 (409)
|.++-
T Consensus 417 fdYl~ 421 (509)
T KOG1298|consen 417 FDYLK 421 (509)
T ss_pred HHHHh
Confidence 88653
No 53
>PRK10015 oxidoreductase; Provisional
Probab=99.97 E-value=9.9e-29 Score=236.04 Aligned_cols=331 Identities=17% Similarity=0.166 Sum_probs=189.5
Q ss_pred CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-ceeEEechhHHHHHHHcCCchHHHhhcccccC--eE
Q 015331 1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-GFAITLWTNAWRALDAVGISDSLRQQHIQLQG--MV 76 (409)
Q Consensus 1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~--~~ 76 (409)
|+ .++||+||||||||+++|+.|+++|++|+|+||.+.++.. .++..+...+.+.+-. ++...- .....+.. +.
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~-~i~~~~~~~~~~ 78 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASA-PVERKVTREKIS 78 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccC-CccccccceeEE
Confidence 65 4689999999999999999999999999999999877543 2344444433332210 221100 00011111 12
Q ss_pred EEeccCCcccccccccccCC-CCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCE
Q 015331 77 VASSVSCQPASEISFKTKGN-RGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKV 153 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~ 153 (409)
+.. .++ ...+.+..... ......+.+.|..|++.|.+.+. +++++.+++|+++..+++.+.....++.+++||+
T Consensus 79 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~ 155 (429)
T PRK10015 79 FLT-EES--AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANV 155 (429)
T ss_pred EEe-CCC--ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCE
Confidence 211 111 11222221111 11123567899999999987663 6899999999999877776654444556799999
Q ss_pred EEEcCCCchHhHhHhCCCCCcccCc--eeEEEeeecCccCC--------Cccccceeec---Cce--EEEEEecCCCeEE
Q 015331 154 LIGCDGVNSVVAKWLGFKKPAFAGR--SDIRGCTDFKLRHG--------LEPKFQQFLG---KGF--RYGFLPCNDQTVY 218 (409)
Q Consensus 154 vV~AdG~~s~vr~~lg~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~---~~~--~~~~~p~~~~~~~ 218 (409)
||+|+|.+|.+++.++......... .++......+.... ....+.++.+ .+. ..+++| .++...
T Consensus 156 VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~-~~d~v~ 234 (429)
T PRK10015 156 VILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYT-NKDSIS 234 (429)
T ss_pred EEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEE-cCCcEE
Confidence 9999999999999988754332221 22222222221100 0001111111 110 122333 334444
Q ss_pred EEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCC
Q 015331 219 WFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHP 298 (409)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~ 298 (409)
+.+.+...... ....++.. +++.+ ..++.+.+++......++....++.... ...++...++++++||||++
T Consensus 235 vGv~~~~~~~~-~~~~~~~~----~l~~~-~~~p~~~~~~~~~~~~e~~~~~ip~gg~--~~~~~~~~~g~llvGDAAg~ 306 (429)
T PRK10015 235 LGLVCGLGDIA-HAQKSVPQ----MLEDF-KQHPAIRPLISGGKLLEYSAHMVPEGGL--AMVPQLVNDGVMIVGDAAGF 306 (429)
T ss_pred EEEEEehhhhc-cCCCCHHH----HHHHH-hhChHHHHHhcCCEEEEEeeEEcccCCc--ccCCccccCCeEEEeccccc
Confidence 44333221110 11223332 33444 3456666666554333332222221110 01235678999999999999
Q ss_pred CCC--CCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhh
Q 015331 299 MTP--DIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWR 361 (409)
Q Consensus 299 ~~P--~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~ 361 (409)
++| ++|+||+.||.++..+|+.+.+++... +...+.|+.|++..+..
T Consensus 307 v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~----------------d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 307 CLNLGFTVRGMDLAIASAQAAATTVIAAKERA----------------DFSASSLAQYKRELEQS 355 (429)
T ss_pred ccccCccccchhHHHHHHHHHHHHHHHHHhcC----------------CCccccHHHHHHHHHHC
Confidence 995 699999999999999999999988742 23456788998877654
No 54
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.97 E-value=2e-27 Score=227.34 Aligned_cols=328 Identities=18% Similarity=0.163 Sum_probs=189.6
Q ss_pred CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc-eeEEechhHHHHHHHcCCchHHHhhcccc------
Q 015331 1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG-FAITLWTNAWRALDAVGISDSLRQQHIQL------ 72 (409)
Q Consensus 1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~------ 72 (409)
|+ +++||+||||||||+++|+.|+++|++|+|+||.+.++... ++..+..... +++ ..++... .+.
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~---e~l--~~~~~~~-~~~~~~~~~ 74 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL---EHI--IPGFADS-APVERLITH 74 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhH---HHH--hhhhhhc-Ccccceeee
Confidence 65 46999999999999999999999999999999998776432 3333433332 222 1111110 111
Q ss_pred cCeEEEeccCCcccccccccccC-CCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEE
Q 015331 73 QGMVVASSVSCQPASEISFKTKG-NRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVF 149 (409)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~ 149 (409)
....+... .+. ..+.+.... .......+.+.|..|++.|.+.+ .+++++.+++|+++..+++.+.+...++.++
T Consensus 75 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i 151 (428)
T PRK10157 75 EKLAFMTE-KSA--MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVI 151 (428)
T ss_pred eeEEEEcC-CCc--eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEE
Confidence 11112111 111 112221111 11122345789999999998866 3789999999999988777765555667789
Q ss_pred ecCEEEEcCCCchHhHhHhCCCCCcccCceeE--EEeeecCccCC--------Cccccceeec---Cce--EEEEEecCC
Q 015331 150 KTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDI--RGCTDFKLRHG--------LEPKFQQFLG---KGF--RYGFLPCND 214 (409)
Q Consensus 150 ~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~---~~~--~~~~~p~~~ 214 (409)
+||+||+|+|.+|.+++.++..........++ ......+.... .......+.+ .+. ..++++ .+
T Consensus 152 ~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~-~~ 230 (428)
T PRK10157 152 EAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYT-NE 230 (428)
T ss_pred ECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEE-cC
Confidence 99999999999999999998764433333332 11122221100 0011111211 110 123333 33
Q ss_pred CeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEecc
Q 015331 215 QTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGD 294 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGD 294 (409)
+...+.+.+..+.. ......+. .+.+.+. ..+.+...+......++....++.... ...++...++++++||
T Consensus 231 ~~~svG~~~~~~~~-~~~~~~~~----~~l~~~~-~~p~v~~~~~~~~~~~~~~~~ip~~g~--~~~~~~~~~g~llvGD 302 (428)
T PRK10157 231 NTLSLGLVCGLHHL-HDAKKSVP----QMLEDFK-QHPAVAPLIAGGKLVEYSAHVVPEAGI--NMLPELVGDGVLIAGD 302 (428)
T ss_pred CeEEEEEEEehHHh-cccCCCHH----HHHHHHH-hCchHHHHhCCCeEHHHHhhHhhcCCc--ccCCceecCCeEEEec
Confidence 33434333322211 11223333 2334442 244455555433222221211111100 0112456799999999
Q ss_pred CCCCCCC--CCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhH
Q 015331 295 AFHPMTP--DIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRS 362 (409)
Q Consensus 295 AA~~~~P--~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~ 362 (409)
||++++| ++|+|++.||.++..+|+.+.++++.+ +...+.|+.|++..+...
T Consensus 303 AAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~----------------~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 303 AAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD----------------DFSKQKLAEYRQHLESGP 356 (428)
T ss_pred ccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC----------------CcchhhHHHHHHHHHHhH
Confidence 9999998 599999999999999999999988752 245567899998766654
No 55
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.96 E-value=2.3e-27 Score=225.75 Aligned_cols=304 Identities=19% Similarity=0.184 Sum_probs=181.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCcc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQP 85 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 85 (409)
||+||||||||+++|+.|++.|++|+|+|+.+.... .....++.. .++++++.+.+. ..+.....+...+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 73 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVE---HVWPDVYEYRFPKQPR 73 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHh---hcCCCceEEecCCcch
Confidence 799999999999999999999999999999875432 122333332 234444322221 1122212111111110
Q ss_pred cccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 86 ASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
. .++....+++..|.+.|.+.+. +++++ .++|+.++.+ ++.+.|++.+|.+++|++||+|+|.+|
T Consensus 74 --~---------~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 74 --K---------LGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred --h---------cCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 0123336899999999988664 45664 6688888877 667888888888899999999999999
Q ss_pred HhHhHhCCCCCcccCceeEEEe-eecCccC-CCcc-ccceee-c--------Cce--EEEEEecCCCeEEEEEEEcCCCC
Q 015331 163 VVAKWLGFKKPAFAGRSDIRGC-TDFKLRH-GLEP-KFQQFL-G--------KGF--RYGFLPCNDQTVYWFFNWCPSNQ 228 (409)
Q Consensus 163 ~vr~~lg~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~-~--------~~~--~~~~~p~~~~~~~~~~~~~~~~~ 228 (409)
.+++...... .+.....++ +..+... .... .+..+. . ... +.+++|.++++..+.......
T Consensus 142 ~~~~~~~~~~---~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~-- 216 (388)
T TIGR01790 142 LVQYVRFPLN---VGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLAD-- 216 (388)
T ss_pred hcccccCCCC---ceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccC--
Confidence 6643321111 111122222 2222111 1111 111111 0 112 678899998875443221111
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhh
Q 015331 229 DKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGC 308 (409)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~ 308 (409)
....+.+.+++.+.+.+........+++ ..+....|+....+ ...+|++++|||||.++|++|+|++
T Consensus 217 --~~~~~~~~~~~~l~~~~~~~g~~~~~i~----~~~~~~iP~~~~~~-------~~~~rv~liGdAAg~~~P~tG~Gi~ 283 (388)
T TIGR01790 217 --RPALPRDRLRQRILARLNAQGWQIKTIE----EEEWGALPVGLPGP-------FLPQRVAAFGAAAGMVHPTTGYSVA 283 (388)
T ss_pred --CCCCCHHHHHHHHHHHHHHcCCeeeEEE----eeeeEEEecccCCC-------ccCCCeeeeechhcCcCCcccccHH
Confidence 1223456666666666543332211111 11222334322211 2568999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHH
Q 015331 309 AALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCE 364 (409)
Q Consensus 309 ~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~ 364 (409)
.|+++|..|++.|.+++.. ..+.+++.|++..+++...
T Consensus 284 ~al~~a~~la~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 284 RALSDAPGLAAAIAQALCQ------------------SSELATAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHHHHHHHHHHHhcc------------------CHHHHHHHHHHhchHHHHH
Confidence 9999999999999998764 3467788887655554433
No 56
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.96 E-value=9.2e-29 Score=219.75 Aligned_cols=361 Identities=21% Similarity=0.237 Sum_probs=240.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCcc--C-------CcceeEEechhHHHHHHHcCCchHHHh-hc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESL--R-------VTGFAITLWTNAWRALDAVGISDSLRQ-QH 69 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~--~-------~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~ 69 (409)
.+||+||||||+|+++|..|... .++|.|+|....+ . ...+-..+++.++..++.+|+|+.+.. .+
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~ 115 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY 115 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence 68999999999999999999853 5799999988332 1 122456678899999999999998876 45
Q ss_pred ccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHh-----hCCCCeEEeCceEEEEEEe--------C
Q 015331 70 IQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER-----ELPSGTIRYSSKVVSVEES--------G 136 (409)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~-----~~~~~~i~~~~~v~~v~~~--------~ 136 (409)
.++..+..++.... ..+.+.......+ ..+++....+...|+. ..+++++..+.++.++... +
T Consensus 116 ~~~~~~~v~Ds~s~---a~I~~~~d~~~~d-~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~ 191 (481)
T KOG3855|consen 116 QKFSRMLVWDSCSA---ALILFDHDNVGID-MAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG 191 (481)
T ss_pred ccccceeeecccch---hhhhhcccccccc-ceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence 56666666543322 3333433322211 2345656556666652 3357899999999888652 2
Q ss_pred CeEEEEEcCCCEEecCEEEEcCCCchHhHhHhCCCCCcc-cCceeEEEeeecCc-cCCCccccceeecCceEEEEEecCC
Q 015331 137 LFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPAF-AGRSDIRGCTDFKL-RHGLEPKFQQFLGKGFRYGFLPCND 214 (409)
Q Consensus 137 ~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~ 214 (409)
....+++.+|..+.+|++|+|||.+|.+|+..+++.... +.++++++...... .......|+.|.+.|+ +.++|+.+
T Consensus 192 ~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~Gp-iAllpl~d 270 (481)
T KOG3855|consen 192 MWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGP-IALLPLSD 270 (481)
T ss_pred ceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCc-eeeccccc
Confidence 346688899999999999999999999999999887665 56666676666554 3334567888888887 78999998
Q ss_pred CeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhc-CCCH-----H----H-------HHHHHcCCC-------C------
Q 015331 215 QTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCH-DLPE-----Q----V-------KAIVENTPL-------D------ 264 (409)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~----~-------~~~~~~~~~-------~------ 264 (409)
+.....+...+.........+++.+-..+...|. +.+. . . ..++..... .
T Consensus 271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~ 350 (481)
T KOG3855|consen 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG 350 (481)
T ss_pred ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEec
Confidence 8765555555444433345555555555544443 1110 0 0 011111110 0
Q ss_pred --ceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchh
Q 015331 265 --SILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKE 342 (409)
Q Consensus 265 --~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~ 342 (409)
....+|+.+. .++.|+.+|+.++|||||.+||+.|||.|+++.|...|...|.++...+ .
T Consensus 351 dksRa~FPLgf~-----ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g----------~--- 412 (481)
T KOG3855|consen 351 DKSRAQFPLGFG-----HADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSG----------L--- 412 (481)
T ss_pred ccceeecccccc-----cHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhc----------c---
Confidence 0112222222 2347889999999999999999999999999999999999999988753 1
Q ss_pred hhchHHHHHHHHHHHhhhhHHHHHHHhHHhcc----chhHHHHHHHHHHH
Q 015331 343 EFKRNEIGLKRYATERRWRSCELISMAYIVGY----DGKIINFLRDKIFS 388 (409)
Q Consensus 343 ~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~----~~~~~~~~r~~~~~ 388 (409)
+-....-|+.|+++|.+....+.-....... ..+.+..+|.++|.
T Consensus 413 -DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~ 461 (481)
T KOG3855|consen 413 -DLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQ 461 (481)
T ss_pred -cccchhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchh
Confidence 2355677899999998877665555433322 33444444444444
No 57
>PLN02697 lycopene epsilon cyclase
Probab=99.95 E-value=3.2e-25 Score=214.02 Aligned_cols=314 Identities=18% Similarity=0.206 Sum_probs=192.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+||+||||||||+++|..|++.|++|+|+|+...... ..+++. ..++.+|+.+.+.. .+....++.. ++
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW~---~~l~~lgl~~~i~~---~w~~~~v~~~-~~ 177 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE---DEFKDLGLEDCIEH---VWRDTIVYLD-DD 177 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccch---hHHHhcCcHHHHHh---hcCCcEEEec-CC
Confidence 58999999999999999999999999999998643222 222332 35677777554432 1223333322 11
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCC
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGV 160 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~ 160 (409)
... . . ...+..++|..|.+.|.+++. ++++ .+++|++++.+++.+. +.+.+|.+++|++||+|||.
T Consensus 178 ~~~-~--~-------~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~ 246 (529)
T PLN02697 178 KPI-M--I-------GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGA 246 (529)
T ss_pred cee-e--c-------cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCc
Confidence 111 0 0 111225899999999998764 5676 7789999988776655 45677888999999999999
Q ss_pred chHhHhHhCCC--CCcccCceeEEEeeecCccCCCccccceeec---------------CceEEEEEecCCCeEEEEEEE
Q 015331 161 NSVVAKWLGFK--KPAFAGRSDIRGCTDFKLRHGLEPKFQQFLG---------------KGFRYGFLPCNDQTVYWFFNW 223 (409)
Q Consensus 161 ~s~vr~~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~~~ 223 (409)
+|. +.++.. .+....+.++.....+.. .+.++....+++ ...+.|++|.++++.++--++
T Consensus 247 ~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~-~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~ 323 (529)
T PLN02697 247 ASG--RLLQYEVGGPRVCVQTAYGVEVEVEN-NPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETC 323 (529)
T ss_pred Chh--hhhccccCCCCcccEEEEEEEEEecC-CCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEee
Confidence 993 333322 122233444333334332 122222222221 124688999999987763333
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCC
Q 015331 224 CPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDI 303 (409)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~ 303 (409)
.... ...+.+.+++.+.+.+........++ ...+....|+.. +.+ . ..++++++||||+.++|.+
T Consensus 324 l~~~----~~l~~~~l~~~L~~~l~~~Gi~~~~i----~~~E~g~iPm~g--~~~----~-~~~~vl~vG~AAG~vhPsT 388 (529)
T PLN02697 324 LASK----DAMPFDLLKKRLMSRLETMGIRILKT----YEEEWSYIPVGG--SLP----N-TEQKNLAFGAAASMVHPAT 388 (529)
T ss_pred eccC----CCCCHHHHHHHHHHHHHhCCCCcceE----EEEEeeeecCCC--CCc----c-cCCCeeEeehhhcCCCCch
Confidence 2111 12335566677776665332211111 112333444422 222 2 2578999999999999999
Q ss_pred cchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHH
Q 015331 304 GQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSC 363 (409)
Q Consensus 304 G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~ 363 (409)
|.|+..++.+|..+|+.+.++++...+++. ....+.....++.|++.+.....
T Consensus 389 Gy~v~~~l~~A~~~A~~ia~~l~~~~~~~~-------~~~~~~~~~~l~~~~~lw~~e~~ 441 (529)
T PLN02697 389 GYSVVRSLSEAPKYASVIARILKNVSSGGK-------LGTSNSSNISMQAWNTLWPQERK 441 (529)
T ss_pred hhhHHHHHHhHHHHHHHHHHHhhCCccccc-------cccccchHHHHHHHHHhChHHHH
Confidence 999999999999999999999875300000 00013567788888877665443
No 58
>PLN02463 lycopene beta cyclase
Probab=99.95 E-value=5.5e-25 Score=209.42 Aligned_cols=286 Identities=19% Similarity=0.225 Sum_probs=179.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+||+||||||||+++|..|+++|++|+|+|+.+..... ++.+++ .+.++.+|+.+.+... . ....++.....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p-~~~g~w---~~~l~~lgl~~~l~~~-w--~~~~v~~~~~~ 100 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWP-NNYGVW---VDEFEALGLLDCLDTT-W--PGAVVYIDDGK 100 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhc-cccchH---HHHHHHCCcHHHHHhh-C--CCcEEEEeCCC
Confidence 479999999999999999999999999999997643211 111211 3457778886665432 1 22222222111
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.. .. ......++|..|.+.|.+++. +++++ ..+|++++..++.+.|++++|.+++||+||+|||.+
T Consensus 101 ~~--~~---------~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 101 KK--DL---------DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred Cc--cc---------cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 10 00 112236899999999988764 56765 579999999888899999999899999999999999
Q ss_pred hHhHhHhCCCCCcccCceeEEEe-eecCccCCCccccceee-------c-----------CceEEEEEecCCCeEEEEEE
Q 015331 162 SVVAKWLGFKKPAFAGRSDIRGC-TDFKLRHGLEPKFQQFL-------G-----------KGFRYGFLPCNDQTVYWFFN 222 (409)
Q Consensus 162 s~vr~~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~~p~~~~~~~~~~~ 222 (409)
|.+.+. ..+...+....++. ..+.. ++.+.....++ + ...+.+++|.++++++...+
T Consensus 169 s~l~~~---~~~~~~g~Q~a~Gi~~ev~~-~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT 244 (447)
T PLN02463 169 RCLVQY---DKPFNPGYQVAYGILAEVDS-HPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEET 244 (447)
T ss_pred cCccCC---CCCCCccceeeeeEEeecCC-CCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEee
Confidence 987542 22222333222332 23222 11121111110 0 02367899999997554333
Q ss_pred EcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCC
Q 015331 223 WCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPD 302 (409)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~ 302 (409)
..... ...+.+.+++.+.+.+...+-...++ ...+....|+....+ ...++++++||||+.++|.
T Consensus 245 ~l~s~----~~~~~~~lk~~L~~~l~~~Gi~~~~i----~~~E~~~IPmg~~~~-------~~~~~~~~~G~aag~v~p~ 309 (447)
T PLN02463 245 SLVAR----PGLPMDDIQERMVARLRHLGIKVKSV----EEDEKCVIPMGGPLP-------VIPQRVLGIGGTAGMVHPS 309 (447)
T ss_pred eeecC----CCCCHHHHHHHHHHHHHHCCCCccee----eeeeeeEeeCCCCCC-------CCCCCEEEecchhcCcCCC
Confidence 21111 12234566666666654333211111 112223334432211 1357899999999999999
Q ss_pred CcchhhhHhhHHHHHHHHHHHHhcC
Q 015331 303 IGQGGCAALEDGIILARCIAEASTE 327 (409)
Q Consensus 303 ~G~G~~~al~da~~La~~l~~~~~~ 327 (409)
+|.|+..++..|..+|+.+.++++.
T Consensus 310 tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 310 TGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999875
No 59
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.94 E-value=4.4e-25 Score=206.73 Aligned_cols=303 Identities=16% Similarity=0.098 Sum_probs=175.4
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
||+|||||+||+++|+.|++. |++|+|+|+.+..... ....++.....-.... ..+.+ ....+....+.....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~~~~~~~~~~~-~~~~~--v~~~W~~~~v~~~~~- 75 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFFDSDLSDAQHA-WLADL--VQTDWPGYEVRFPKY- 75 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceecccccchhhhh-hhhhh--heEeCCCCEEECcch-
Confidence 899999999999999999987 9999999998743321 1222221111000000 00111 112222333322111
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
....++.+..+++.+|.+.+.+.+... ++++++|+.+ +++++++ .+|.+++|++||+|+|.+|.
T Consensus 76 -----------~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 76 -----------RRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPS 139 (370)
T ss_pred -----------hhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCC
Confidence 111112345899999999999877543 8889999988 3444444 78889999999999999874
Q ss_pred hHhHhCCCCCcccCceeEEEe-eecCccCCCcccccee---e---cCc-eEEEEEecCCCeEEEEEEEcCCCCCCCCCCC
Q 015331 164 VAKWLGFKKPAFAGRSDIRGC-TDFKLRHGLEPKFQQF---L---GKG-FRYGFLPCNDQTVYWFFNWCPSNQDKELEGN 235 (409)
Q Consensus 164 vr~~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~---~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (409)
... +.+..++.|+ +....+ +++....+ . ..+ .+.+++|.++++.+|-.++..+. ...+
T Consensus 140 ~~~--------~~~~Q~f~G~~~r~~~p--~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~----~~l~ 205 (370)
T TIGR01789 140 AHL--------KGGFQVFLGREMRLQEP--HGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADD----PLLD 205 (370)
T ss_pred ccc--------cceeeEEEEEEEEEcCC--CCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCC----CCCC
Confidence 211 1233333333 233322 22222111 1 233 34666999999988865554332 1334
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHH
Q 015331 236 PDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGI 315 (409)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~ 315 (409)
.+.+++.+.+.+...+....++++ .+....|+....+.. ......++++++|||||.++|.+|+|++.++++|.
T Consensus 206 ~~~l~~~l~~~~~~~g~~~~~i~~----~e~g~iPm~~~~~~~--~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~ 279 (370)
T TIGR01789 206 RNALSQRIDQYARANGWQNGTPVR----HEQGVLPVLLGGDFS--AYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENAD 279 (370)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEE----eeeeEEeeecCCCcc--cccccCCceeeeecccccccccccccHHHHHHHHH
Confidence 555666665554322222222111 122234432211000 00012567999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHH
Q 015331 316 ILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISM 368 (409)
Q Consensus 316 ~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~ 368 (409)
.|++.+.. .+ ....+++..|...|+.+.....-+
T Consensus 280 ~la~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 313 (370)
T TIGR01789 280 ALAAQPDL--SS-----------------EQLAAFIDSRARRHWSKTGYYRLL 313 (370)
T ss_pred HHHhccCc--Cc-----------------cchhhhhhHHHHHHHHHhHHHHHH
Confidence 99998851 11 144456788888877776644443
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.94 E-value=3.3e-25 Score=212.32 Aligned_cols=319 Identities=19% Similarity=0.183 Sum_probs=189.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcC---CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchH--HHhhcccc-cCeEEEe
Q 015331 6 DIVIVGAGIAGLTTSLALHRLG---IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDS--LRQQHIQL-QGMVVAS 79 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g---~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~~-~~~~~~~ 79 (409)
||+|||||+||.++|..|++++ ++|+|||+...++ .+.|.+..|....+++.+|+.+. +.+..... .++.+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 7999999999999999999998 8999999887654 46788899999999999999876 55543333 3555544
Q ss_pred ccCCcccccccccc-------------------------------------------cC---CCCCccccccCHHHHHHH
Q 015331 80 SVSCQPASEISFKT-------------------------------------------KG---NRGGHEVRSVKRSLLMEA 113 (409)
Q Consensus 80 ~~~~~~~~~~~~~~-------------------------------------------~~---~~~~~~~~~i~r~~l~~~ 113 (409)
+.........+|.. .. .......++++|..|.+.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 33211111111111 00 001223468999999999
Q ss_pred HHhhC--CCCeEEeCceEEEEEEeCCe--EEEEEcCCCEEecCEEEEcCCCchHhHhH-hCCCCCcccCce-eEEEee-e
Q 015331 114 LEREL--PSGTIRYSSKVVSVEESGLF--KLVNLADGAVFKTKVLIGCDGVNSVVAKW-LGFKKPAFAGRS-DIRGCT-D 186 (409)
Q Consensus 114 l~~~~--~~~~i~~~~~v~~v~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~s~vr~~-lg~~~~~~~~~~-~~~~~~-~ 186 (409)
|++.+ .|++++.+ +|+++..++++ ..|++.+|.+++||++|+|+|..|.+.+. ++.......... +-+++. .
T Consensus 160 L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~ 238 (454)
T PF04820_consen 160 LRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQ 238 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEE
T ss_pred HHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEe
Confidence 99876 37888887 47777766554 46888899999999999999999988665 333322222222 111111 2
Q ss_pred cCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCce
Q 015331 187 FKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSI 266 (409)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (409)
.+......+.......+.+++|.+|+.++... .+.+..... ++++..+.+.+.+..... . ..
T Consensus 239 ~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~~~A~~~l~~~l~~~~~--------~--~~- 300 (454)
T PF04820_consen 239 VPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SDDEAEAELLAYLGGSPE--------A--EP- 300 (454)
T ss_dssp EE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HHHHHHHHHHHHHTCHCT--------T--SC-
T ss_pred cCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CHHHHHHHHHHhcchhhh--------c--ch-
Confidence 22222233333344456678999999998766 555544322 333334445444431110 0 00
Q ss_pred eeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhch
Q 015331 267 LVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKR 346 (409)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (409)
...++... ...+...+|+++|||||++++|+.++|+.+++..+..|++.|... ..
T Consensus 301 ~~i~~~~g-----~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~--------------------~~ 355 (454)
T PF04820_consen 301 RHIRFRSG-----RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD--------------------DF 355 (454)
T ss_dssp EEEE-S-E-----EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT--------------------TC
T ss_pred hhhccccc-----chhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC--------------------CC
Confidence 11111111 123556789999999999999999999999999888888877652 12
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHh
Q 015331 347 NEIGLKRYATERRWRSCELISMA 369 (409)
Q Consensus 347 ~~~~l~~y~~~r~~~~~~~~~~s 369 (409)
.+.++++|++..+.....+.++-
T Consensus 356 ~~~~~~~Yn~~~~~~~~~~~~fi 378 (454)
T PF04820_consen 356 SPAALDRYNRRMRREYERIRDFI 378 (454)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 36688999988887776665553
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.92 E-value=1.6e-22 Score=190.35 Aligned_cols=277 Identities=21% Similarity=0.188 Sum_probs=178.0
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCceEEEeCCCccC-CcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 6 DIVIVGAGIAGLTTSLAL--HRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L--~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
||+||||||||+++|+.| ++.|.+|+|+|+++... ...+...++...... .+.+... .+....+.....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~------~~~~v~~--~w~~~~v~~~~~ 72 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP------LDSLVSH--RWSGWRVYFPDG 72 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc------hHHHHhe--ecCceEEEeCCC
Confidence 899999999999999999 77899999999987651 122233333222111 1222222 223444443322
Q ss_pred CcccccccccccCCCCCccccccCHHHHHHHHHhhCC-CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331 83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP-SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN 161 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~-~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
..... .+.+.+|++..|.+.|.+++. ++.+..+++|++|+.+++.+.|.+++|.+++|++||+|+|..
T Consensus 73 ~~~~~-----------~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 73 SRILI-----------DYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred ceEEc-----------ccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 11110 123448999999999999876 567888999999999999899999999999999999999976
Q ss_pred hHhHhHhCCCCCcccCceeEEEe-eecCccCCCcccccee---e-----cCceEEEEEecCCCeEEEEEEEcCCCCCCCC
Q 015331 162 SVVAKWLGFKKPAFAGRSDIRGC-TDFKLRHGLEPKFQQF---L-----GKGFRYGFLPCNDQTVYWFFNWCPSNQDKEL 232 (409)
Q Consensus 162 s~vr~~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (409)
+...+. .+...+.|+ +....+ .+++....+ . ....+++++|.++++..+..++.... .
T Consensus 142 ~~~~~~--------~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~----~ 208 (374)
T PF05834_consen 142 SPKARP--------LGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR----P 208 (374)
T ss_pred cccccc--------cccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC----C
Confidence 652111 122222332 333322 122222222 1 22357889999999877765554432 1
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchhhhHhh
Q 015331 233 EGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALE 312 (409)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~ 312 (409)
..+.+.+++.+.+.+........++++ .+....|+....+. ....++++.+|+|++.++|.+|.++..+++
T Consensus 209 ~~~~~~~~~~l~~~l~~~g~~~~~i~~----~E~G~IPm~~~~~~-----~~~~~~v~~iG~agG~v~PsTGYs~~~~~~ 279 (374)
T PF05834_consen 209 ALPEEELKARLRRYLERLGIDDYEILE----EERGVIPMTTGGFP-----PRFGQRVIRIGTAGGMVKPSTGYSFARIQR 279 (374)
T ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEE----eecceeecccCCCc-----cccCCCeeeEEccccCCCCcccHHHHHHHH
Confidence 245666777777776543333222222 23344555222222 224667999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015331 313 DGIILARCIAE 323 (409)
Q Consensus 313 da~~La~~l~~ 323 (409)
.|..+|+.|.+
T Consensus 280 ~a~~ia~~l~~ 290 (374)
T PF05834_consen 280 QADAIADALAK 290 (374)
T ss_pred HHHHHHHHHhh
Confidence 99999998886
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.83 E-value=1.5e-18 Score=150.45 Aligned_cols=219 Identities=19% Similarity=0.112 Sum_probs=155.1
Q ss_pred ecCEEEEcCCCchHhHhHhCCCCCcccCceeEEEeeecCccCCCccccceeecCceEEEEEecCCCeEEEEEEEcCCCCC
Q 015331 150 KTKVLIGCDGVNSVVAKWLGFKKPAFAGRSDIRGCTDFKLRHGLEPKFQQFLGKGFRYGFLPCNDQTVYWFFNWCPSNQD 229 (409)
Q Consensus 150 ~ad~vV~AdG~~s~vr~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 229 (409)
.|.++|+|||..|.+|+.+... .......++|+.-.....+....-+.++++...+.+++++.++....+-+..+...
T Consensus 1 ~A~LtivaDG~~S~fRk~l~~~--~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P 78 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELSDN--KPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP 78 (276)
T ss_pred CCCEEEEecCCchHHHHhhcCC--CCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC
Confidence 3789999999999999999733 33445556666544444455566677888877899999999998888777644221
Q ss_pred CCCCCChhHHHHHHHHHhc-CCCHHHHHHHHc-CCCCceeeccccccCchhhhccccCCCcEEEeccCCCCCCCCCcchh
Q 015331 230 KELEGNPDKTKQFVLSKCH-DLPEQVKAIVEN-TPLDSILVSPLRYRYPWEVLWGNISKGNVCVAGDAFHPMTPDIGQGG 307 (409)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA~~~~P~~G~G~ 307 (409)
..+..++++++++.+. .+++.+++.+.. .....+...|....++. ....++++++|||++..||++|+||
T Consensus 79 ---~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~-----~~~~~G~vllGDA~nmrHPLTGgGM 150 (276)
T PF08491_consen 79 ---SVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPAS-----PNWKPGVVLLGDAANMRHPLTGGGM 150 (276)
T ss_pred ---CccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCC-----CCCCCCEEEEehhhcCcCCccccch
Confidence 1234566777776665 666666554443 22233334444433332 3356889999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHhcCCCCCcccCCCCCchhhhchHHHHHHHHHHHhhhhHHHHHHHh--HHhcc--chhHHHHHH
Q 015331 308 CAALEDGIILARCIAEASTEKPSGVTKDKAGEDKEEFKRNEIGLKRYATERRWRSCELISMA--YIVGY--DGKIINFLR 383 (409)
Q Consensus 308 ~~al~da~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s--~~~~~--~~~~~~~~r 383 (409)
+.|+.|+..|++.|...- +-.+.+.+.++++.|+.+|++...-+.-++ +...| .+..+..+|
T Consensus 151 TVAl~Dv~lL~~lL~~~~--------------dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l~~Lr 216 (276)
T PF08491_consen 151 TVALNDVVLLRDLLSPIP--------------DLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYLKALR 216 (276)
T ss_pred hhHHHHHHHHHHHHhhhc--------------CcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999861 111245788999999999999887655554 33344 667778999
Q ss_pred HHHHHHHhh
Q 015331 384 DKIFSVLLG 392 (409)
Q Consensus 384 ~~~~~~~~~ 392 (409)
+..|.++..
T Consensus 217 ~gcf~Yf~~ 225 (276)
T PF08491_consen 217 QGCFKYFQL 225 (276)
T ss_pred HHHHHHHHc
Confidence 999997643
No 63
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=9.4e-15 Score=131.73 Aligned_cols=155 Identities=26% Similarity=0.283 Sum_probs=103.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc-------ceeEEechhHHHHHHHcCCc-hHHHhhcccc--
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT-------GFAITLWTNAWRALDAVGIS-DSLRQQHIQL-- 72 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~-- 72 (409)
+.+||+||||||||++||..++++|.+|+|||+.+.+... .|.+.-.....+++.+..-. ..+......+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 4689999999999999999999999999999999876432 23332222233444443211 1111111111
Q ss_pred ---------cCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEE
Q 015331 73 ---------QGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLV 141 (409)
Q Consensus 73 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v 141 (409)
.++..+....+.. |+. .-.-+.+.++|..++. +++++.+++|.+++.++....+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~-----Fp~----------sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l 146 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRM-----FPD----------SDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRL 146 (408)
T ss_pred HHHHHHHHhcCCeeEEccCcee-----cCC----------ccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEE
Confidence 1223322222211 110 1344677788877663 7999999999999999999999
Q ss_pred EEcCCCEEecCEEEEcCCCchH-----------hHhHhCCCC
Q 015331 142 NLADGAVFKTKVLIGCDGVNSV-----------VAKWLGFKK 172 (409)
Q Consensus 142 ~~~~g~~~~ad~vV~AdG~~s~-----------vr~~lg~~~ 172 (409)
.+.+|++++||.+|.|+|..|. +.+++|...
T Consensus 147 ~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 147 DTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred EcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 9999999999999999997773 566776653
No 64
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.58 E-value=2.7e-13 Score=128.64 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=47.3
Q ss_pred ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
.++...+...+.+.+ .+++++++++|++++.+++.+.|+++++ ++.+|.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 455566666665443 3789999999999998888888888877 6999999999999864
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.56 E-value=6.8e-14 Score=124.15 Aligned_cols=133 Identities=23% Similarity=0.221 Sum_probs=91.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc--cee-----EEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--GFA-----ITLWTNAWRALDAVGISDSLRQQHIQLQGMV 76 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
++||+||||||||+++|+.|++.|++|+|+|+.+.+... +.+ ..+......+|+++|+..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~------------- 91 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY------------- 91 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc-------------
Confidence 589999999999999999999999999999998865421 111 112223334444444320
Q ss_pred EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCC-eE-EEEEc--------
Q 015331 77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGL-FK-LVNLA-------- 144 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~-~~-~v~~~-------- 144 (409)
.... ...+.+++..+...|.+.+ .+++++.+++|.++..+++ .+ .+...
T Consensus 92 -~~~~------------------~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g 152 (257)
T PRK04176 92 -KEVE------------------DGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG 152 (257)
T ss_pred -eeec------------------CcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC
Confidence 0000 0123567888888888765 3789999999999976554 32 22221
Q ss_pred ---CCCEEecCEEEEcCCCchHhHhHh
Q 015331 145 ---DGAVFKTKVLIGCDGVNSVVAKWL 168 (409)
Q Consensus 145 ---~g~~~~ad~vV~AdG~~s~vr~~l 168 (409)
+..+++|++||+|+|.+|.+.+.+
T Consensus 153 ~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 153 LHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 224799999999999999998776
No 66
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.55 E-value=1.6e-13 Score=121.27 Aligned_cols=133 Identities=21% Similarity=0.298 Sum_probs=88.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcce--eE-----EechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGF--AI-----TLWTNAWRALDAVGISDSLRQQHIQLQGMV 76 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~--~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
++||+||||||+|+++|+.|+++|.+|+|+||+..+..... +. .+.....++++++|+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~-------------- 86 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR-------------- 86 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC--------------
Confidence 58999999999999999999999999999999987542211 10 1111222333333221
Q ss_pred EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCe--E-EEEEc-------
Q 015331 77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLF--K-LVNLA------- 144 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~--~-~v~~~------- 144 (409)
+ ... ....+..++..+.+.|.+++ .++++++++.|.++..+++. + .|.+.
T Consensus 87 ~--------------~~~----~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~ 148 (254)
T TIGR00292 87 Y--------------EDE----GDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELA 148 (254)
T ss_pred e--------------eec----cCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccccc
Confidence 0 000 00112346777888887655 26899999999999876652 2 23332
Q ss_pred ----CCCEEecCEEEEcCCCchHhHhHh
Q 015331 145 ----DGAVFKTKVLIGCDGVNSVVAKWL 168 (409)
Q Consensus 145 ----~g~~~~ad~vV~AdG~~s~vr~~l 168 (409)
+..+++|++||+|+|..|.+.+.+
T Consensus 149 g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 149 GLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 224789999999999999887665
No 67
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.55 E-value=1.6e-12 Score=123.54 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=54.7
Q ss_pred ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc-hHhHhHhCCCCC
Q 015331 104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN-SVVAKWLGFKKP 173 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~-s~vr~~lg~~~~ 173 (409)
.++...+.+.|.+.+ .+++++.+++|.+++.+++.+.|.+.++ ++.+|.||+|+|.+ +.+++.++...+
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIP 212 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCC
Confidence 567777877776654 3789999999999998888888887766 69999999999987 567777776544
No 68
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.50 E-value=7.1e-12 Score=120.27 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=49.4
Q ss_pred cCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC-----CEEecCEEEEcCCCchH-hHhHhCCC
Q 015331 105 VKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADG-----AVFKTKVLIGCDGVNSV-VAKWLGFK 171 (409)
Q Consensus 105 i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g-----~~~~ad~vV~AdG~~s~-vr~~lg~~ 171 (409)
++-..+...|.+.+ .+++++++++|++++.+++.+++.+.++ .++++|.||+|+|.+|. +.+.++..
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~ 268 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR 268 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence 44456666666554 3789999999999998888777765443 36899999999999974 45555544
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.50 E-value=4.5e-13 Score=126.10 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=54.3
Q ss_pred cccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchHh-HhHhCCCC
Q 015331 103 RSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSVV-AKWLGFKK 172 (409)
Q Consensus 103 ~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~~~ 172 (409)
..++...+.+.|.+.+ .+++++.+++|++++.+++.|+ |.+.+|. +++|.||+|+|.++.. .+.++...
T Consensus 142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~ 214 (358)
T PF01266_consen 142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDL 214 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSS
T ss_pred ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccccc
Confidence 3577888888888765 3789999999999999999998 9999998 9999999999999864 44455433
No 70
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.50 E-value=1e-11 Score=111.66 Aligned_cols=306 Identities=17% Similarity=0.111 Sum_probs=171.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCccCCc-ceeEEechhHHHHHHHcCCchHHHhhccccc--
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRL------GIRSLVLESSESLRVT-GFAITLWTNAWRALDAVGISDSLRQQHIQLQ-- 73 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~------g~~V~v~E~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-- 73 (409)
..+||+|||||||||++|+.|+|. .++|.|+|+...++.. -.|-.+.|.+++ ++ ..++.+.+.++.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~ald---EL--~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALD---EL--LPDWKEDGAPLNTP 149 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhh---hh--CcchhhcCCccccc
Confidence 358999999999999999999773 5789999999987543 234445554433 22 233333333322
Q ss_pred --CeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCe--EEEEEc---
Q 015331 74 --GMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLF--KLVNLA--- 144 (409)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~--~~v~~~--- 144 (409)
.-.+... .+.. .++.+..........+.++-..+.++|-+.++ +++|+.+..+.++..+++. ..|.++
T Consensus 150 vT~d~~~fL-t~~~--~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G 226 (621)
T KOG2415|consen 150 VTSDKFKFL-TGKG--RISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG 226 (621)
T ss_pred ccccceeee-ccCc--eeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc
Confidence 1111111 1111 11111111112233557888899999988764 6788888777777554432 223333
Q ss_pred ------------CCCEEecCEEEEcCCCchHhHhHh----CCCC---CcccCceeEEEeeecCccCCCccccceee----
Q 015331 145 ------------DGAVFKTKVLIGCDGVNSVVAKWL----GFKK---PAFAGRSDIRGCTDFKLRHGLEPKFQQFL---- 201 (409)
Q Consensus 145 ------------~g~~~~ad~vV~AdG~~s~vr~~l----g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 201 (409)
.|..+.|+.-|.|.|.+..+.+++ +... +..++.- +......++.........+-+
T Consensus 227 I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglG-lKEvWei~~~~~~pG~v~HT~GwPl 305 (621)
T KOG2415|consen 227 ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLG-LKEVWEIDPENHNPGEVAHTLGWPL 305 (621)
T ss_pred ccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccc-cceeEecChhhcCCcceeeeccCcc
Confidence 234789999999999998876654 3332 2222221 122222222111111111111
Q ss_pred ---cCceEEEEEecCCCeEEEEEEEcCCCCCCCCCCChhHHHHHHHHHhcCCCHHHHHHHHcCCCCceeeccccccCchh
Q 015331 202 ---GKGFRYGFLPCNDQTVYWFFNWCPSNQDKELEGNPDKTKQFVLSKCHDLPEQVKAIVENTPLDSILVSPLRYRYPWE 278 (409)
Q Consensus 202 ---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (409)
.-|+ ..++.+++..+...+.+..+-... -.+| .+++++. ..+|.+...++...-..+....+-..- .+
T Consensus 306 ~~~tYGG-sFlYh~~d~~VavGlVVgLdY~NP--~lsP---~~EFQk~--K~hP~i~~vleGgk~i~YgARaLNEGG-fQ 376 (621)
T KOG2415|consen 306 DNDTYGG-SFLYHFNDPLVAVGLVVGLDYKNP--YLSP---YKEFQKM--KHHPSISKVLEGGKRIAYGARALNEGG-FQ 376 (621)
T ss_pred cCCccCc-eeEEEcCCCeEEEEEEEEecCCCC--CCCH---HHHHHHh--hcCcchhhhhcCcceeeehhhhhccCC-cc
Confidence 1112 345666666554444443222111 1223 2333332 566777777776532222111111100 00
Q ss_pred hhccccCCCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcC
Q 015331 279 VLWGNISKGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTE 327 (409)
Q Consensus 279 ~~~~~~~~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~ 327 (409)
........+=+|||=+|++++=---.|...||.++..+|+.+-+++.+
T Consensus 377 -siPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~ 424 (621)
T KOG2415|consen 377 -SIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKG 424 (621)
T ss_pred -cCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhc
Confidence 112445566789999999999989999999999999999999999876
No 71
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.49 E-value=3e-12 Score=125.36 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=90.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-CcceeEEechhHHHHHHHcCC--c-hH------HHhhcc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDAVGI--S-DS------LRQQHI 70 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl--~-~~------~~~~~~ 70 (409)
|.+.+||+|||||++|+++|+.|+++|.+|+|+||++... .++++..+-..+.+.+....+ . +. +.....
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p 82 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAP 82 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCC
Confidence 5567999999999999999999999999999999975432 222333333334333332110 0 00 000000
Q ss_pred c-ccCeEEEecc--------------------CC-ccc---cccccc------ccCC----CCCccccccCHHHHHHHHH
Q 015331 71 Q-LQGMVVASSV--------------------SC-QPA---SEISFK------TKGN----RGGHEVRSVKRSLLMEALE 115 (409)
Q Consensus 71 ~-~~~~~~~~~~--------------------~~-~~~---~~~~~~------~~~~----~~~~~~~~i~r~~l~~~l~ 115 (409)
. .....+..+. .. ..+ ..+... .... ...+....++...+...+.
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~ 162 (508)
T PRK12266 83 HIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNA 162 (508)
T ss_pred CcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHH
Confidence 0 0000000000 00 000 000000 0000 0001111355566655555
Q ss_pred hhC--CCCeEEeCceEEEEEEeCCeEEEEEcC---CC--EEecCEEEEcCCCchH
Q 015331 116 REL--PSGTIRYSSKVVSVEESGLFKLVNLAD---GA--VFKTKVLIGCDGVNSV 163 (409)
Q Consensus 116 ~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~---g~--~~~ad~vV~AdG~~s~ 163 (409)
+.+ .+++++.+++|+++..+++.+.|++.+ |+ +++++.||+|+|.++.
T Consensus 163 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 163 RDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 433 378999999999998888777777654 43 6899999999999984
No 72
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.49 E-value=6.9e-12 Score=127.13 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=52.1
Q ss_pred ccCHHHHHHHHHhhCC-CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 104 SVKRSLLMEALERELP-SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~-~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
.++...+...|.+.+. +++++++++|++++.+++.|+|.+.++..+.+|.||+|+|.++.
T Consensus 404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 4677888898888764 58999999999999888889999888877889999999999984
No 73
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.49 E-value=7.9e-12 Score=122.55 Aligned_cols=171 Identities=16% Similarity=0.144 Sum_probs=96.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-CcceeEEechhHHHHHHHcCCc---h------HHHhhcc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDAVGIS---D------SLRQQHI 70 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~~gl~---~------~~~~~~~ 70 (409)
|+.++||+|||||++|+++|+.|+++|.+|+|+||.+... .+++...+-..+.+.+...++. + .+.....
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap 82 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP 82 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC
Confidence 4567999999999999999999999999999999996432 2222233333344444332111 0 0001000
Q ss_pred c-ccCeEEEeccC-Ccc--------------------c---ccccccc----cC------CCCCccccccCHHHHHHHHH
Q 015331 71 Q-LQGMVVASSVS-CQP--------------------A---SEISFKT----KG------NRGGHEVRSVKRSLLMEALE 115 (409)
Q Consensus 71 ~-~~~~~~~~~~~-~~~--------------------~---~~~~~~~----~~------~~~~~~~~~i~r~~l~~~l~ 115 (409)
. .....+..... ... . ..+.... .. ....+....++...+...+.
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~ 162 (502)
T PRK13369 83 HIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNA 162 (502)
T ss_pred ccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHH
Confidence 0 00000100000 000 0 0000000 00 00011112356666766665
Q ss_pred hhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC----CEEecCEEEEcCCCchH-hHh-HhCCC
Q 015331 116 REL--PSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGVNSV-VAK-WLGFK 171 (409)
Q Consensus 116 ~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g----~~~~ad~vV~AdG~~s~-vr~-~lg~~ 171 (409)
..+ .+++++.+++|+++..+++.+.|.+.++ .+++|+.||+|+|.++. +.+ .+|..
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~ 226 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSN 226 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence 544 3789999999999998888788877664 25899999999999985 444 33543
No 74
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.47 E-value=4.9e-12 Score=118.01 Aligned_cols=170 Identities=20% Similarity=0.272 Sum_probs=102.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCc---------ceeEEechhHHHH-HHHcC--CchHH-Hh
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVT---------GFAITLWTNAWRA-LDAVG--ISDSL-RQ 67 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~---------~~~~~~~~~~~~~-l~~~g--l~~~~-~~ 67 (409)
+++||+|||||+.|+++|+.|++++ ++|+|+||.+.+... ..|+.+.+.+..+ +...| .+.++ .+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998 999999999865321 1233333332211 00000 00000 00
Q ss_pred hccccc--CeEEEec-------------------------cCCcccccccc--c--ccCCCCCccccccCHHHHHHHHHh
Q 015331 68 QHIQLQ--GMVVASS-------------------------VSCQPASEISF--K--TKGNRGGHEVRSVKRSLLMEALER 116 (409)
Q Consensus 68 ~~~~~~--~~~~~~~-------------------------~~~~~~~~~~~--~--~~~~~~~~~~~~i~r~~l~~~l~~ 116 (409)
...+.. +...+.. .+.+.+..+.. . .......+....++...+...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 110000 1111100 01111111000 0 000011233346777777777777
Q ss_pred hC--CCCeEEeCceEEEEEEeCC-eEEEEEcCCCE-EecCEEEEcCCCch-HhHhHhCCCC
Q 015331 117 EL--PSGTIRYSSKVVSVEESGL-FKLVNLADGAV-FKTKVLIGCDGVNS-VVAKWLGFKK 172 (409)
Q Consensus 117 ~~--~~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~-~~ad~vV~AdG~~s-~vr~~lg~~~ 172 (409)
.+ .++.+++|++|++++..++ ...+.+.+|++ ++|++||+|.|..| ++.+..|.+.
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 55 3789999999999999988 57778888876 99999999999998 4677777776
No 75
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.45 E-value=1.1e-12 Score=123.66 Aligned_cols=141 Identities=26% Similarity=0.282 Sum_probs=75.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC-------cceeEEe---------c------hhHHHHHHHcCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV-------TGFAITL---------W------TNAWRALDAVGIS 62 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~-------~~~~~~~---------~------~~~~~~l~~~gl~ 62 (409)
|||+|||||||||+||+.|++.|.+|+|+||++.+.. ..|.+.- . .-....|++++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999986522 1122221 0 0112334444321
Q ss_pred hHHHhhcccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCe-E
Q 015331 63 DSLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLF-K 139 (409)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~-~ 139 (409)
+ +.+.... .++......++.. |+ . .-.-..+.+.|.+.+. +++++++++|.+++.++++ +
T Consensus 81 d-~~~ff~~-~Gv~~~~~~~gr~-----fP-------~---s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f 143 (409)
T PF03486_consen 81 D-LIAFFEE-LGVPTKIEEDGRV-----FP-------K---SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVF 143 (409)
T ss_dssp H-HHHHHHH-TT--EEE-STTEE-----EE-------T---T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEE
T ss_pred H-HHHHHHh-cCCeEEEcCCCEE-----CC-------C---CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCcee
Confidence 1 1111000 1222211111111 11 0 1234566666666553 7899999999999988777 8
Q ss_pred EEEEcCCCEEecCEEEEcCCCch
Q 015331 140 LVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 140 ~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
.|+++++.++.||.||.|+|..|
T Consensus 144 ~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 144 GVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EEEETTTEEEEESEEEE----SS
T ss_pred EeeccCcccccCCEEEEecCCCC
Confidence 89997778899999999999876
No 76
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.43 E-value=2.2e-12 Score=107.35 Aligned_cols=129 Identities=25% Similarity=0.233 Sum_probs=81.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc-------eeEEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG-------FAITLWTNAWRALDAVGISDSLRQQHIQLQGMV 76 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
++||+||||||+||++|+.|++.|++|+|||++..++..- ..+.+...+..+|+++|+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~-------------- 82 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIP-------------- 82 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT----------------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCce--------------
Confidence 5899999999999999999999999999999998765321 2245666778888887652
Q ss_pred EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeC-CeEE-EEE---------
Q 015331 77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESG-LFKL-VNL--------- 143 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~-~~~~-v~~--------- 143 (409)
+....+ ..+..+...+...|..++ +++.++..+.|.++...+ +++. |..
T Consensus 83 y~~~~~------------------g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~g 144 (230)
T PF01946_consen 83 YEEYGD------------------GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAG 144 (230)
T ss_dssp -EE-SS------------------EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-
T ss_pred eEEeCC------------------eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhh
Confidence 110000 112345555666665433 478999999999987666 4432 211
Q ss_pred --cCCCEEecCEEEEcCCCchHh
Q 015331 144 --ADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 144 --~~g~~~~ad~vV~AdG~~s~v 164 (409)
-|.-++++++||+|+|-.+.+
T Consensus 145 lHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 145 LHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp -T-B-EEEEESEEEE---SSSSS
T ss_pred cCCCcceEEEeEEEeCCCCchHH
Confidence 133479999999999988865
No 77
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.42 E-value=1.8e-11 Score=116.73 Aligned_cols=67 Identities=27% Similarity=0.451 Sum_probs=55.4
Q ss_pred ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhCCC
Q 015331 104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLGFK 171 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~ 171 (409)
.++...+.+.|.+.+. +++++++++|.+++..++.+.|.+.++ ++.||.||.|+|.+|. +.+.+|..
T Consensus 145 ~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 145 IVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 5677888888887653 689999999999998888888888776 6999999999999984 56777764
No 78
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.41 E-value=5e-10 Score=109.32 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 114 LERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 114 l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
|.+.+.+++|+++++|+.|+.++++|+|++.+|+++.||.||.|.-...
T Consensus 231 l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 279 (462)
T TIGR00562 231 IEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKA 279 (462)
T ss_pred HHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHH
Confidence 3334433579999999999999888999988888899999999887643
No 79
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.41 E-value=3.9e-11 Score=115.51 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=49.8
Q ss_pred ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchH-hHhHhCCCC
Q 015331 104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSV-VAKWLGFKK 172 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~~ 172 (409)
.++-..+...|.+.+ .+++++++++|++++.+++.+. |++.++ ++.+|.||.|+|.++. +.+.++...
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~ 268 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDI 268 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCc
Confidence 355567777776554 3789999999999988777654 666544 6999999999999985 344455543
No 80
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.40 E-value=8.7e-12 Score=103.02 Aligned_cols=133 Identities=22% Similarity=0.246 Sum_probs=90.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc-------eeEEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG-------FAITLWTNAWRALDAVGISDSLRQQHIQLQGMV 76 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~-------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
..||+||||||+||++|+.|+++|.+|+||||+..+...- ..+.+...+.++|+++|+.-+-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~----------- 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEE----------- 98 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCccee-----------
Confidence 4699999999999999999999999999999998764321 1233555677777777653110
Q ss_pred EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCC-eEE-EEE---------
Q 015331 77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGL-FKL-VNL--------- 143 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~-~~~-v~~--------- 143 (409)
..+ ..+..+...+...|..++ .+..|+.++.|.++...++ ++. |..
T Consensus 99 ---~e~------------------g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~ 157 (262)
T COG1635 99 ---EED------------------GYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG 157 (262)
T ss_pred ---cCC------------------ceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcc
Confidence 001 011344445555555443 2578999999999876665 322 111
Q ss_pred --cCCCEEecCEEEEcCCCchHhHhHh
Q 015331 144 --ADGAVFKTKVLIGCDGVNSVVAKWL 168 (409)
Q Consensus 144 --~~g~~~~ad~vV~AdG~~s~vr~~l 168 (409)
.|.-.+++++||+|+|-...+-+.+
T Consensus 158 lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 158 LHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred cccCcceeeEEEEEeCCCCchHHHHHH
Confidence 2344789999999999888775554
No 81
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.40 E-value=1.1e-10 Score=111.90 Aligned_cols=70 Identities=20% Similarity=0.136 Sum_probs=47.7
Q ss_pred ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEe-CCe-EEEEEcCCCEEecCEEEEcCCCch-HhHhHhCCCCCc
Q 015331 104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEES-GLF-KLVNLADGAVFKTKVLIGCDGVNS-VVAKWLGFKKPA 174 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~-~~~-~~v~~~~g~~~~ad~vV~AdG~~s-~vr~~lg~~~~~ 174 (409)
.++...+...|.+.+ .+++++.+++|++++.. ++. +.|++.+| ++.++.||+|.|.++ .+++.++...+.
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~ 253 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPI 253 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCc
Confidence 455556666665544 37899999999999754 344 45777777 589987766666555 667777766443
No 82
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.39 E-value=5.5e-12 Score=122.57 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=87.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-ccCCcceeEEechhH-HHHHHHcCCchHHHhhcccccCeEEE
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE-SLRVTGFAITLWTNA-WRALDAVGISDSLRQQHIQLQGMVVA 78 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~-~~~~~~~~~~~~~~~-~~~l~~~gl~~~~~~~~~~~~~~~~~ 78 (409)
|..++||+|||||+||+.+|+.+++.|.+|+|+|++. .++..+|.-.+...+ -.+.++++....+........++.+.
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r 80 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFR 80 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCcee
Confidence 4567999999999999999999999999999999874 332222221111111 12223221111110000000111111
Q ss_pred eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE-EEEEcCCCEEecCEE
Q 015331 79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK-LVNLADGAVFKTKVL 154 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~-~v~~~~g~~~~ad~v 154 (409)
..+.... ... ......+++..+.+.+.+.+ +++++ +...|.++..+++.+ .|.+.+|..+.|+.|
T Consensus 81 ~ln~skG---------pAV-~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~V 149 (618)
T PRK05192 81 MLNTSKG---------PAV-RALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAV 149 (618)
T ss_pred ecccCCC---------Cce-eCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEE
Confidence 1110000 000 00112578888888776654 35676 456788887666654 488888999999999
Q ss_pred EEcCCCch
Q 015331 155 IGCDGVNS 162 (409)
Q Consensus 155 V~AdG~~s 162 (409)
|+|+|.++
T Consensus 150 IlATGTFL 157 (618)
T PRK05192 150 VLTTGTFL 157 (618)
T ss_pred EEeeCcch
Confidence 99999765
No 83
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.38 E-value=4.3e-12 Score=122.10 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=87.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHh-hcccccCeEEEec
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQ-QHIQLQGMVVASS 80 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~~ 80 (409)
....+|+|||||||||++|..|++.|++|+|||+++.++. .+.+.+.... +.+++...... ............+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG---~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p 82 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG---LWVYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLP 82 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcc---eeecCCCcCC--CccccCCCCcccchhhhhhhhccCC
Confidence 3468999999999999999999999999999999986532 2222221100 00111110000 0000000000000
Q ss_pred cCCcccccccccccCC-CCCccccccCHHHHHHHHHhhCC--CC--eEEeCceEEEEEEeCCeEEEEEcCCC----EEec
Q 015331 81 VSCQPASEISFKTKGN-RGGHEVRSVKRSLLMEALERELP--SG--TIRYSSKVVSVEESGLFKLVNLADGA----VFKT 151 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~l~~~~~--~~--~i~~~~~v~~v~~~~~~~~v~~~~g~----~~~a 151 (409)
..--....+++..... ..........+.++.++|.+.+. +. .|+++++|++++..+++|+|++.++. +..+
T Consensus 83 ~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~ 162 (461)
T PLN02172 83 RECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIF 162 (461)
T ss_pred HhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEc
Confidence 0000000111111000 00001124567788888877553 34 48999999999998889999886532 4579
Q ss_pred CEEEEcCCCch
Q 015331 152 KVLIGCDGVNS 162 (409)
Q Consensus 152 d~vV~AdG~~s 162 (409)
|.||+|+|..+
T Consensus 163 d~VIvAtG~~~ 173 (461)
T PLN02172 163 DAVVVCNGHYT 173 (461)
T ss_pred CEEEEeccCCC
Confidence 99999999765
No 84
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.38 E-value=2.4e-11 Score=118.06 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=47.1
Q ss_pred ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
.++...+...|.+.+ .+++|+.+++|++++. ++.+.|++.+| ++.||.||.|+|.++.
T Consensus 179 ~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred EECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 567788888887655 3789999999999985 45577888777 5999999999999864
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.36 E-value=1.1e-12 Score=113.13 Aligned_cols=136 Identities=22% Similarity=0.216 Sum_probs=72.9
Q ss_pred EEECCCHHHHHHHHHHHHcCCc-eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCccc
Q 015331 8 VIVGAGIAGLTTSLALHRLGIR-SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQPA 86 (409)
Q Consensus 8 vIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (409)
+||||||+||++|..|.++|.+ |+|||+++.+....... + ....+ ..+ .. +.....-...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~---~------~~~~~-------~~~--~~-~~~~~~~~~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY---Y------SYTRL-------HSP--SF-FSSDFGLPDF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH----------TTTT--------BSS--SC-CTGGSS--CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe---C------CCCcc-------ccC--cc-ccccccCCcc
Confidence 7999999999999999999999 99999997654321100 0 00000 000 00 0000000000
Q ss_pred ccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 87 SEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
..+.+..... .........+.++.++|.+.+. +..++++++|++++.++++|+|++.++.+++||.||.|+|..|.
T Consensus 62 ~~~~~~~~~~-~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 62 ESFSFDDSPE-WRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp CHSCHHHHHH-HHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred cccccccCCC-CCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 0011100000 0001113556666666654332 56799999999999999999999999988999999999997653
No 86
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.35 E-value=4.6e-10 Score=109.24 Aligned_cols=54 Identities=30% Similarity=0.383 Sum_probs=42.8
Q ss_pred HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
.+.+.|.+.++..+|+++++|+.|+.+++.++|.+.+|+++.||.||.|.-...
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHH
Confidence 344455555533379999999999998888999999999999999999987654
No 87
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.34 E-value=1.9e-10 Score=109.68 Aligned_cols=65 Identities=23% Similarity=0.216 Sum_probs=48.7
Q ss_pred ccCHHHHHHHHHhhCC--C-CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh-HhHhC
Q 015331 104 SVKRSLLMEALERELP--S-GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV-AKWLG 169 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~--~-~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg 169 (409)
.++...+.+.|.+.+. + ..+..++.+..++.....+.|.+.+|. +.+|.||.|+|.++.. ...++
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 5666777777776553 4 356668889888874356889998888 9999999999999864 34444
No 88
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.33 E-value=3e-11 Score=102.95 Aligned_cols=137 Identities=21% Similarity=0.140 Sum_probs=81.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc------------ceeEEechhHHHHHHHc------CCchHHHh
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT------------GFAITLWTNAWRALDAV------GISDSLRQ 67 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~------------~~~~~~~~~~~~~l~~~------gl~~~~~~ 67 (409)
+|+|||+||+|+++|+.|+..|.+|+||||+.....+ ..+..+.++...+++-. |+.+....
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 7999999999999999999999999999998753211 12233444433333322 32222111
Q ss_pred hcccccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC
Q 015331 68 QHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA 147 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~ 147 (409)
. ...+.. ++ ........ +|.. .-.-+.|.+.|.. +.+|.++++|+.+...++.|++++++|.
T Consensus 83 ~------~~~~~~-~~-----~~~~~d~~--pyvg-~pgmsalak~LAt---dL~V~~~~rVt~v~~~~~~W~l~~~~g~ 144 (331)
T COG3380 83 A------VWTFTG-DG-----SPPRGDED--PYVG-EPGMSALAKFLAT---DLTVVLETRVTEVARTDNDWTLHTDDGT 144 (331)
T ss_pred c------cccccc-CC-----CCCCCCCC--cccc-CcchHHHHHHHhc---cchhhhhhhhhhheecCCeeEEEecCCC
Confidence 1 111000 00 00000000 1110 1222445555554 5689999999999999999999997765
Q ss_pred -EEecCEEEEcCCC
Q 015331 148 -VFKTKVLIGCDGV 160 (409)
Q Consensus 148 -~~~ad~vV~AdG~ 160 (409)
...+|.||.|--.
T Consensus 145 ~~~~~d~vvla~PA 158 (331)
T COG3380 145 RHTQFDDVVLAIPA 158 (331)
T ss_pred cccccceEEEecCC
Confidence 5678888887543
No 89
>PRK07233 hypothetical protein; Provisional
Probab=99.33 E-value=8.1e-10 Score=107.00 Aligned_cols=53 Identities=25% Similarity=0.188 Sum_probs=41.2
Q ss_pred HHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 110 LMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 110 l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
+.+.|.+.+. +++|+++++|++|+.+++.+++...++.++++|.||.|.....
T Consensus 200 l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 200 LIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 4455555443 5789999999999988887766667777899999999998653
No 90
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.32 E-value=6.1e-10 Score=108.63 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=45.0
Q ss_pred HHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHhHhHh
Q 015331 109 LLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWL 168 (409)
Q Consensus 109 ~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~l 168 (409)
.|.+.|.+.+++++|+++++|+.|+.+++++.|.+.+|+++.||.||.|.- .....+.+
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll 285 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP-HDIAETLL 285 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence 455555555544579999999999999889999988888899999999884 33334444
No 91
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.31 E-value=6.1e-11 Score=104.17 Aligned_cols=173 Identities=20% Similarity=0.207 Sum_probs=98.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEech-------------hHHHHHHHcCCchHHHh
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWT-------------NAWRALDAVGISDSLRQ 67 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~-------------~~~~~l~~~gl~~~~~~ 67 (409)
|.+..||+|||||+-|+++|+.|+++|.+++++|+-+.+...|.+.+.+. -..+.++.+--.+.+..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 55678999999999999999999999999999999988765554433221 12222332211111100
Q ss_pred hcccccCeEEEec------------------------cCCccccccc----ccccCC-CCCccccccCHHHHHHHHHhhC
Q 015331 68 QHIQLQGMVVASS------------------------VSCQPASEIS----FKTKGN-RGGHEVRSVKRSLLMEALEREL 118 (409)
Q Consensus 68 ~~~~~~~~~~~~~------------------------~~~~~~~~~~----~~~~~~-~~~~~~~~i~r~~l~~~l~~~~ 118 (409)
.........+... .+.+....++ ++.... ......-.+...+-.+.|...+
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 0000000000000 0000000111 111000 0011122455555556666555
Q ss_pred C--CCeEEeCceEEEEE---EeCCeEEEEEcCCCEEecCEEEEcCCCch--HhHhHhCCCCC
Q 015331 119 P--SGTIRYSSKVVSVE---ESGLFKLVNLADGAVFKTKVLIGCDGVNS--VVAKWLGFKKP 173 (409)
Q Consensus 119 ~--~~~i~~~~~v~~v~---~~~~~~~v~~~~g~~~~ad~vV~AdG~~s--~vr~~lg~~~~ 173 (409)
. ++.++.+..|..++ +++..+.|.+.+|..+.++-+|.+.|+|- .++..+++..+
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~P 225 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFP 225 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCc
Confidence 3 68999999998876 35567889999999999999999999974 23433444433
No 92
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.30 E-value=2.7e-11 Score=114.63 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHH----HHHHHcCCchHHHhhcccccCeEEE
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAW----RALDAVGISDSLRQQHIQLQGMVVA 78 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~----~~l~~~gl~~~~~~~~~~~~~~~~~ 78 (409)
...+|+|||||||||++|..|.+.|++|++|||.+.++.. +.+.++.- .+.+.+ ...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl---W~y~~~~~~~~ss~Y~~l----------------~tn 65 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL---WKYTENVEVVHSSVYKSL----------------RTN 65 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce---EeecCcccccccchhhhh----------------hcc
Confidence 4679999999999999999999999999999999875432 22221111 011111 110
Q ss_pred eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC----CCeEEeCceEEEEEEeC-CeEEEEEcCC----CEE
Q 015331 79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP----SGTIRYSSKVVSVEESG-LFKLVNLADG----AVF 149 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~----~~~i~~~~~v~~v~~~~-~~~~v~~~~g----~~~ 149 (409)
....--....++|... ...++.++.++.++|.+.+. ...|.++++|..++... +.|.|.+.++ ...
T Consensus 66 ~pKe~~~~~dfpf~~~-----~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ 140 (448)
T KOG1399|consen 66 LPKEMMGYSDFPFPER-----DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEE 140 (448)
T ss_pred CChhhhcCCCCCCccc-----CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEE
Confidence 0000001112223221 23345777789999987664 34799999999999888 7999998765 367
Q ss_pred ecCEEEEcCCCch
Q 015331 150 KTKVLIGCDGVNS 162 (409)
Q Consensus 150 ~ad~vV~AdG~~s 162 (409)
.+|.||+|+|-+.
T Consensus 141 ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 141 IFDAVVVCTGHYV 153 (448)
T ss_pred EeeEEEEcccCcC
Confidence 8999999999883
No 93
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.28 E-value=3.1e-11 Score=111.41 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=84.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEE-eCCCccCCcceeEEechhHHHHH-HHcCCchHHHhhcccccCeEEEeccCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVL-ESSESLRVTGFAITLWTNAWRAL-DAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~-E~~~~~~~~~~~~~~~~~~~~~l-~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
||+|||||.||+.||+.+++.|.+|+|+ ++.+.....+|.-.+...+.-.| +++.......-.......+.+...+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 8999999999999999999999999999 44444444445444443333222 222111111111111123333322211
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCC
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDG 159 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG 159 (409)
.-... ......++|..+.+.+.+.+ ++.++. ..+|+++..+++. ..|.+.+|..+.+|.||+|+|
T Consensus 81 kGpav----------~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTG 149 (392)
T PF01134_consen 81 KGPAV----------HALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATG 149 (392)
T ss_dssp S-GGC----------TEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TT
T ss_pred CCCCc----------cchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecc
Confidence 11000 11223689998888887755 456775 5689999887766 458899999999999999999
Q ss_pred C
Q 015331 160 V 160 (409)
Q Consensus 160 ~ 160 (409)
.
T Consensus 150 t 150 (392)
T PF01134_consen 150 T 150 (392)
T ss_dssp T
T ss_pred c
Confidence 8
No 94
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.27 E-value=7.6e-11 Score=114.42 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHHhhCC--C-CeEEeCceEEEEEEeCC-eEEEEEc---CCC--EEecCEEEEcCCCch-HhHhHhCCCC
Q 015331 104 SVKRSLLMEALERELP--S-GTIRYSSKVVSVEESGL-FKLVNLA---DGA--VFKTKVLIGCDGVNS-VVAKWLGFKK 172 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~--~-~~i~~~~~v~~v~~~~~-~~~v~~~---~g~--~~~ad~vV~AdG~~s-~vr~~lg~~~ 172 (409)
.++...+.+.|.+.+. + ++++++++|++++.+++ .|.|.+. +|+ +++|++||+|+|.+| .+++.+|+..
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~ 257 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPE 257 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 5777888888877653 3 69999999999998655 4777653 353 689999999999987 4677777764
No 95
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.27 E-value=9e-11 Score=113.11 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=55.1
Q ss_pred cccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEe-CCeEEEEE---cCCC--EEecCEEEEcCCCchH-hHhHhCCCC
Q 015331 103 RSVKRSLLMEALEREL---PSGTIRYSSKVVSVEES-GLFKLVNL---ADGA--VFKTKVLIGCDGVNSV-VAKWLGFKK 172 (409)
Q Consensus 103 ~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~-~~~~~v~~---~~g~--~~~ad~vV~AdG~~s~-vr~~lg~~~ 172 (409)
..++...+.+.|.+.+ .+++++++++|++++.+ ++.|++++ .+++ +++||+||+|.|.+|. +.+.+|+..
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~ 258 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPE 258 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 3678888888887655 36899999999999887 67788763 3442 6899999999999994 677777764
No 96
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.27 E-value=3.7e-10 Score=106.69 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=43.4
Q ss_pred ccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 104 SVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
.++...+...|.+.+ .+++++.+++|.+++.. .|.+.+|. ++||.||.|+|.+|.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChh
Confidence 567777878777654 27899999999999653 57777775 789999999999874
No 97
>PLN02612 phytoene desaturase
Probab=99.26 E-value=3.5e-09 Score=105.10 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=47.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcce------------e----EEechhHHHHHHHcCCchH
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGF------------A----ITLWTNAWRALDAVGISDS 64 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~------------~----~~~~~~~~~~l~~~gl~~~ 64 (409)
..+|+|||||++||++|+.|+++|++|+|+|+.+.++.... | ....++..++++++|+.+.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR 169 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence 57899999999999999999999999999999875422111 1 1123567888999998654
No 98
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.26 E-value=5.7e-10 Score=111.68 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=48.2
Q ss_pred ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEe--CCe-EEEEE---cCCC--EEecCEEEEcCCCchH-hHhHhC
Q 015331 104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEES--GLF-KLVNL---ADGA--VFKTKVLIGCDGVNSV-VAKWLG 169 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~--~~~-~~v~~---~~g~--~~~ad~vV~AdG~~s~-vr~~lg 169 (409)
.++...+...|.+.+ .+++++.+++|+++..+ ++. +.|++ .+++ ++.+|.||+|+|.+|. +++.++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 467778888777755 36899999999999876 343 33443 2333 5899999999999985 566665
No 99
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.4e-10 Score=111.31 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=82.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+.++||+|||||++|+++|+.|.++|.+ ++||||+..+.....- . ...++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~---~---------------------ry~~l~~~~p 61 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY---N---------------------RYPGLRLDSP 61 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh---c---------------------cCCceEECCc
Confidence 4578999999999999999999999998 9999999865432110 0 1111111111
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEe--CCeEEEEEcCCCE--EecCEEEE
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEES--GLFKLVNLADGAV--FKTKVLIG 156 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~--~~~~~v~~~~g~~--~~ad~vV~ 156 (409)
.. ...+++........+....-.+..+...+.+.-....+.+++.|..+..+ ++.|+|+++++.. ++||.||.
T Consensus 62 ~~---~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ 138 (443)
T COG2072 62 KW---LLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVV 138 (443)
T ss_pred hh---eeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEE
Confidence 10 01111111110001111112345555555554334577787777776655 4579999999875 45999999
Q ss_pred cCCCch
Q 015331 157 CDGVNS 162 (409)
Q Consensus 157 AdG~~s 162 (409)
|+|..+
T Consensus 139 ATG~~~ 144 (443)
T COG2072 139 ATGHLS 144 (443)
T ss_pred eecCCC
Confidence 999866
No 100
>PLN02568 polyamine oxidase
Probab=99.24 E-value=7.8e-10 Score=108.50 Aligned_cols=53 Identities=28% Similarity=0.350 Sum_probs=46.9
Q ss_pred HHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331 108 SLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV 160 (409)
Q Consensus 108 ~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (409)
..|.+.|.+.+++..|+++++|+.|+..++.++|++.+|+++.||.||.+.-.
T Consensus 242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 242 LSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 45788888888767899999999999999999999999988999999988764
No 101
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.22 E-value=1.4e-09 Score=103.80 Aligned_cols=169 Identities=16% Similarity=0.205 Sum_probs=102.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHHHHHHcCCc---hHHHhhcc--------
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWRALDAVGIS---DSLRQQHI-------- 70 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~-------- 70 (409)
+.+||+|||||+.|+-+|+-++.+|++|+|+|+++.- +.+++...+-..++++|++..+. +.+.+...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 5789999999999999999999999999999999864 34456666777788888775432 22221100
Q ss_pred --cccCeEEEec-----------------cCCc-----cccccccc------ccC-C-----CCCccccccCHHHHHHHH
Q 015331 71 --QLQGMVVASS-----------------VSCQ-----PASEISFK------TKG-N-----RGGHEVRSVKRSLLMEAL 114 (409)
Q Consensus 71 --~~~~~~~~~~-----------------~~~~-----~~~~~~~~------~~~-~-----~~~~~~~~i~r~~l~~~l 114 (409)
+......... ..+. ....+... +.- . ...|..+.++-..|.-..
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 1000000000 0000 00000000 000 0 111222334444444444
Q ss_pred HhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCC-----EEecCEEEEcCCCchH-hHhHhCCC
Q 015331 115 EREL--PSGTIRYSSKVVSVEESGLFKLVNLADGA-----VFKTKVLIGCDGVNSV-VAKWLGFK 171 (409)
Q Consensus 115 ~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~-----~~~ad~vV~AdG~~s~-vr~~lg~~ 171 (409)
...+ .+.++...++|+.+..+++.+.|...|.. +++|+.||+|+|.|+- +++..+..
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~ 235 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE 235 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhccc
Confidence 3332 36799999999999999887677776543 5899999999999995 46666444
No 102
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.21 E-value=3.3e-10 Score=109.95 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=54.3
Q ss_pred cccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeC-CeEEEEEc---CCC--EEecCEEEEcCCCchH-hHhHhCCCC
Q 015331 103 RSVKRSLLMEALERELP--SGTIRYSSKVVSVEESG-LFKLVNLA---DGA--VFKTKVLIGCDGVNSV-VAKWLGFKK 172 (409)
Q Consensus 103 ~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~-~~~~v~~~---~g~--~~~ad~vV~AdG~~s~-vr~~lg~~~ 172 (409)
..++...+.+.|.+.+. +++++++++|++++.++ +.|.+++. ++. +++||+||+|.|.+|. +++.+|+..
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~ 251 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPE 251 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCc
Confidence 36788888888887663 78999999999998864 45776543 332 6899999999999874 678888764
No 103
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.19 E-value=4.9e-10 Score=108.45 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=52.6
Q ss_pred ccCHHHHHHHHHhhCC------C--CeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCchH-hHhHhCC
Q 015331 104 SVKRSLLMEALERELP------S--GTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNSV-VAKWLGF 170 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~------~--~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~ 170 (409)
.++...+.+.|.+.+. + ++++++++|++++.+ ++.+.|++.+| +++||.||+|.|.+|. +.+.+|+
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence 5777778777766542 3 578999999999987 55688888877 5999999999999994 6777775
No 104
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.18 E-value=3.3e-10 Score=112.05 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=50.0
Q ss_pred ccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEE-EEEc---CC--CEEecCEEEEcCCCchH-hHhHhCCCC
Q 015331 104 SVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKL-VNLA---DG--AVFKTKVLIGCDGVNSV-VAKWLGFKK 172 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~-v~~~---~g--~~~~ad~vV~AdG~~s~-vr~~lg~~~ 172 (409)
.++...+...+...+ .+++++++++|+++..+++.+. |++. ++ .+++|+.||+|+|.++. +.+..+...
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~ 222 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRI 222 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCC
Confidence 567777777766544 3789999999999988776543 5442 23 36899999999999985 555556543
No 105
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.17 E-value=3.9e-10 Score=103.51 Aligned_cols=110 Identities=27% Similarity=0.412 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
+||+|||||++|+++|..|++.|++|+|||+.+. . + .+... . ....+ .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-g--g-~~~~~-------------~----------~~~~~---~-- 48 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-G--G-QLTTT-------------T----------EVENY---P-- 48 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-C--c-ceeec-------------c----------ccccc---C--
Confidence 6999999999999999999999999999998762 1 1 01000 0 00000 0
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
. +. ..+...++...+.+.+ .++++++ ++|++++..++.+.|++.++.++++|.||.|+|...
T Consensus 49 ---~--~~----------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 49 ---G--FP----------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred ---C--CC----------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 0 00 0112223333443322 2678888 899999988888889888888999999999999865
No 106
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.16 E-value=2.8e-11 Score=116.22 Aligned_cols=148 Identities=20% Similarity=0.177 Sum_probs=35.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc---eeEEech-hHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG---FAITLWT-NAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~---~~~~~~~-~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
|||||||||+|++||+.+++.|.+|+|+|+.+.++... ....+.. .... ...-|+..++............. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~--~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQE--D 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhcccccc--c
Confidence 89999999999999999999999999999998764321 1111111 1111 11112333333322110000000 0
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeE-EEEEcC---CCEEecCEEE
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFK-LVNLAD---GAVFKTKVLI 155 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~-~v~~~~---g~~~~ad~vV 155 (409)
....... ..+++..+...|.+.+ .++++++++.|.++..+++.+ .|.+.+ ..+++|+++|
T Consensus 78 ~~~~~~~--------------~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~I 143 (428)
T PF12831_consen 78 RYGWVSN--------------VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFI 143 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc--------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000000 1233333333333322 378999999999998877543 344443 3479999999
Q ss_pred EcCCCchHhHhHhCCC
Q 015331 156 GCDGVNSVVAKWLGFK 171 (409)
Q Consensus 156 ~AdG~~s~vr~~lg~~ 171 (409)
+|+|. ..+....|.+
T Consensus 144 DaTG~-g~l~~~aG~~ 158 (428)
T PF12831_consen 144 DATGD-GDLAALAGAP 158 (428)
T ss_dssp ----------------
T ss_pred ccccc-cccccccccc
Confidence 99994 5555554443
No 107
>PLN02268 probable polyamine oxidase
Probab=99.16 E-value=2.6e-09 Score=103.41 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=36.6
Q ss_pred CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV 160 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (409)
+..|++++.|+.|...+++++|++.+|+++.||.||.|.-.
T Consensus 210 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 45799999999999998899999999988999999999753
No 108
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.15 E-value=1.6e-10 Score=112.81 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=81.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++||++|..|.+.|++|++|||++.++.... ...+. .+ ....-...........--
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~---~~~~~---------~~---g~~~~y~sl~~n~sk~~~ 66 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR---YTENP---------ED---GRSSVYDSLHTNTSKEMM 66 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC---HSTTC---------CC---SEGGGSTT-B-SS-GGGS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe---eCCcC---------CC---CccccccceEEeeCchHh
Confidence 5899999999999999999999999999999997643211 00000 00 000001111111000000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCC----CCeEEeCceEEEEEEeC-----CeEEEEEcCCC---EEecC
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELP----SGTIRYSSKVVSVEESG-----LFKLVNLADGA---VFKTK 152 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~----~~~i~~~~~v~~v~~~~-----~~~~v~~~~g~---~~~ad 152 (409)
....++++. .+. ...++.++.++|.+.+. ...|++||+|+++++.+ ++|.|++.++. +..+|
T Consensus 67 ~fsdfp~p~-----~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD 140 (531)
T PF00743_consen 67 AFSDFPFPE-----DYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFD 140 (531)
T ss_dssp CCTTS-HCC-----CCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEEC
T ss_pred cCCCcCCCC-----CCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeC
Confidence 011122221 111 25788899999887553 24899999999999865 46999886543 45689
Q ss_pred EEEEcCCCch
Q 015331 153 VLIGCDGVNS 162 (409)
Q Consensus 153 ~vV~AdG~~s 162 (409)
.||.|+|.++
T Consensus 141 ~VvvatG~~~ 150 (531)
T PF00743_consen 141 AVVVATGHFS 150 (531)
T ss_dssp EEEEEE-SSS
T ss_pred eEEEcCCCcC
Confidence 9999999987
No 109
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.14 E-value=2.1e-08 Score=98.91 Aligned_cols=59 Identities=22% Similarity=0.408 Sum_probs=45.3
Q ss_pred HHHHHHhhCC--CCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCchHhHhHh
Q 015331 110 LMEALERELP--SGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNSVVAKWL 168 (409)
Q Consensus 110 l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s~vr~~l 168 (409)
+.+.|.+.+. +++|++++.|.+|..++++ +.|++.+|+++.+|.||.|.+......+.+
T Consensus 221 l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 221 LVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 4445544432 6899999999999877765 678888888899999999999876665554
No 110
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.12 E-value=4e-08 Score=92.82 Aligned_cols=61 Identities=25% Similarity=0.487 Sum_probs=47.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCc-------c-------eeEEec-hhHHHHHHHcCCchHHH
Q 015331 6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVT-------G-------FAITLW-TNAWRALDAVGISDSLR 66 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~-------~-------~~~~~~-~~~~~~l~~~gl~~~~~ 66 (409)
.|+|||||++||++|+.|++++ .+|+|||+++..+.. + ..+... +..++.++++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 6999999999999999999999 999999998754221 1 112222 56778889999988776
No 111
>PLN02576 protoporphyrinogen oxidase
Probab=99.11 E-value=2.4e-08 Score=98.33 Aligned_cols=38 Identities=34% Similarity=0.660 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLR 40 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~~ 40 (409)
+++||+|||||++||++|+.|+++ |++|+|+|+++.++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 457999999999999999999999 99999999998653
No 112
>PLN02676 polyamine oxidase
Probab=99.11 E-value=7.8e-09 Score=100.69 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhCC--------CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 107 RSLLMEALERELP--------SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 107 r~~l~~~l~~~~~--------~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
.+.+.+.|.+.+. +..|++|++|..|+.++++++|++.+|++++||.||.|.....
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~v 286 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGV 286 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHH
Confidence 4566777776552 2579999999999999999999999999999999999998554
No 113
>PRK07208 hypothetical protein; Provisional
Probab=99.11 E-value=1.9e-08 Score=98.67 Aligned_cols=40 Identities=38% Similarity=0.570 Sum_probs=37.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
|+++.||+|||||++||++|+.|+++|++|+|+|+.+.++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 8889999999999999999999999999999999988653
No 114
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.10 E-value=5.5e-10 Score=106.29 Aligned_cols=148 Identities=23% Similarity=0.228 Sum_probs=86.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc----ceeE-Eech-h-HHHHHHHcCCchH-HHhhcccc-------
Q 015331 8 VIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT----GFAI-TLWT-N-AWRALDAVGISDS-LRQQHIQL------- 72 (409)
Q Consensus 8 vIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~----~~~~-~~~~-~-~~~~l~~~gl~~~-~~~~~~~~------- 72 (409)
+|||||+||+++|+.|+++|.+|+|+||.+.++.. +.+. .+.. . ...+.+..+-... +.......
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 69999999999999999999999999998865321 1111 1111 0 1112222211111 10000000
Q ss_pred ----cCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC
Q 015331 73 ----QGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADG 146 (409)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g 146 (409)
.+..+.....+. .+. ..-....+.+.|.+.+ .+++++++++|++++.+++.+.|++ ++
T Consensus 81 ~~~~~Gv~~~~~~~g~--------------~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~ 144 (400)
T TIGR00275 81 FFESLGLELKVEEDGR--------------VFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SG 144 (400)
T ss_pred HHHHcCCeeEEecCCE--------------eEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CC
Confidence 011111000000 000 0112345566665544 2689999999999988777788877 45
Q ss_pred CEEecCEEEEcCCCch-----------HhHhHhCCC
Q 015331 147 AVFKTKVLIGCDGVNS-----------VVAKWLGFK 171 (409)
Q Consensus 147 ~~~~ad~vV~AdG~~s-----------~vr~~lg~~ 171 (409)
.++.+|.||.|+|.+| .+.+.+|..
T Consensus 145 ~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 145 GEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred cEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence 6799999999999877 456677665
No 115
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.4e-09 Score=98.35 Aligned_cols=112 Identities=26% Similarity=0.324 Sum_probs=75.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+.+||+|||||||||++|.++++++.+ ++|+|+... + +. +.....+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g--g~--------------------------~~~~~~v---- 48 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G--GQ--------------------------LTKTTDV---- 48 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C--Cc--------------------------cccceee----
Confidence 468999999999999999999999999 666665432 1 00 0000000
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG 159 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG 159 (409)
. . ++. ....+.-.+|.+.+.+.+ .+.++.. ..|..++..++.+.|++.++. ++|+.||.|+|
T Consensus 49 e-----n--ypg-------~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG 112 (305)
T COG0492 49 E-----N--YPG-------FPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATG 112 (305)
T ss_pred c-----C--CCC-------CccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcC
Confidence 0 0 000 000244556777777665 3566666 677777777668889999988 99999999999
Q ss_pred CchH
Q 015331 160 VNSV 163 (409)
Q Consensus 160 ~~s~ 163 (409)
....
T Consensus 113 ~~~~ 116 (305)
T COG0492 113 AGAR 116 (305)
T ss_pred Cccc
Confidence 8753
No 116
>PLN02487 zeta-carotene desaturase
Probab=99.09 E-value=5.9e-08 Score=95.49 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=48.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc--------ce----eEE----echhHHHHHHHcCCchHHH
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--------GF----AIT----LWTNAWRALDAVGISDSLR 66 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~----~~~----~~~~~~~~l~~~gl~~~~~ 66 (409)
.++|+|||||++||++|+.|+++|++|+|+|+.+.++.. +. |.. ..++..++++++|+.+.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 359999999999999999999999999999998865421 11 111 2356888999999876653
No 117
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.08 E-value=1.4e-07 Score=87.37 Aligned_cols=200 Identities=12% Similarity=0.025 Sum_probs=102.5
Q ss_pred CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHhHhHhCCCCCc----------ccCceeEEEeeecCc
Q 015331 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVVAKWLGFKKPA----------FAGRSDIRGCTDFKL 189 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~----------~~~~~~~~~~~~~~~ 189 (409)
+..|.++.+|..|.+.+++|+|++.+..++.+|++|++-=. + +..++.+..+. .....+....+.++.
T Consensus 220 ~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl-~-~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~r 297 (450)
T COG1231 220 GTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPL-A-ILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSR 297 (450)
T ss_pred hceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCH-H-HHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCc
Confidence 45889999999999999999999999667999999977542 2 23333333211 011111122222322
Q ss_pred cC--CCc-cccceeecCceEEEEEecC---CCeEEEEEEEc-CCCCCCCCCCChhHHHHHHHHHhcCCCH-HHHHHHHcC
Q 015331 190 RH--GLE-PKFQQFLGKGFRYGFLPCN---DQTVYWFFNWC-PSNQDKELEGNPDKTKQFVLSKCHDLPE-QVKAIVENT 261 (409)
Q Consensus 190 ~~--~~~-~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 261 (409)
+- ... ..-..+......+..+|-. ++...+.-.+. .++.......++++..+.++..+..+.+ ...+.+...
T Consensus 298 pFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~ 377 (450)
T COG1231 298 PFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYG 377 (450)
T ss_pred hhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccc
Confidence 10 000 1112233333334445544 44333322222 2333333556777777777777764444 333333321
Q ss_pred CCCceeeccccccCchhhhc----------cccCCCcEEEec-cCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhc
Q 015331 262 PLDSILVSPLRYRYPWEVLW----------GNISKGNVCVAG-DAFHPMTPDIGQGGCAALEDGIILARCIAEAST 326 (409)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~lvG-DAA~~~~P~~G~G~~~al~da~~La~~l~~~~~ 326 (409)
....+...+.... .+.... -.-..+||.++| .- .|.++.=+--|++++...+..|...+.
T Consensus 378 ~~~~W~~dpwt~G-~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEh----as~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 378 ASVDWSKDPWTLG-GTAAYPPGQRTKLYPTLPAPHGRIHFAGTEH----ASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred eeeecccCCcCCc-cccccCCcccccccccccCCCCceEEeeecc----cccccchhHHHHHHHHHHHHHHHHhhc
Confidence 1111111111111 000000 011457899988 43 345555667799999999998887654
No 118
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.06 E-value=4.1e-08 Score=96.47 Aligned_cols=62 Identities=26% Similarity=0.292 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCC--CCeEEeCceEEEEEEeCC-eEEEEEcCCCEEecCEEEEcCCCchHhHhHhC
Q 015331 108 SLLMEALERELP--SGTIRYSSKVVSVEESGL-FKLVNLADGAVFKTKVLIGCDGVNSVVAKWLG 169 (409)
Q Consensus 108 ~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~-~~~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg 169 (409)
..+.+.|.+.+. +++|+++++|++|..+++ .+.|++.+|+++++|.||.|.|.+..+.+.++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence 456666666553 689999999999987654 45688888988999999999999888776664
No 119
>PLN02661 Putative thiazole synthesis
Probab=99.06 E-value=2.8e-09 Score=97.02 Aligned_cols=128 Identities=22% Similarity=0.255 Sum_probs=77.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCccCCcce--eEE-----echhHHHHHHHcCCchHHHhhcccccCe
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESLRVTGF--AIT-----LWTNAWRALDAVGISDSLRQQHIQLQGM 75 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~~~~~~--~~~-----~~~~~~~~l~~~gl~~~~~~~~~~~~~~ 75 (409)
++||+|||||++|+++|+.|++. |.+|+|+|+...++...+ +.. +.....++|+++|+. ++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~---------fd~- 161 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVP---------YDE- 161 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCC---------ccc-
Confidence 57999999999999999999986 899999999876533111 111 111133444444431 100
Q ss_pred EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeE-EEEE------cC
Q 015331 76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFK-LVNL------AD 145 (409)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~-~v~~------~~ 145 (409)
.++ +. ...+-..+.+.|.+++ ++++++.++.+.++..+++.+ .|.+ .+
T Consensus 162 -----~dg----------------y~-vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~ 219 (357)
T PLN02661 162 -----QEN----------------YV-VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQN 219 (357)
T ss_pred -----CCC----------------ee-EecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhc
Confidence 000 00 0012223334444432 468999999999988766542 2221 11
Q ss_pred --C------CEEecCEEEEcCCCchH
Q 015331 146 --G------AVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 146 --g------~~~~ad~vV~AdG~~s~ 163 (409)
+ ..++|+.||.|+|..++
T Consensus 220 ~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 220 HDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred cCCCCccceeEEECCEEEEcCCCCCc
Confidence 1 26899999999996654
No 120
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.05 E-value=3.1e-09 Score=104.74 Aligned_cols=110 Identities=26% Similarity=0.334 Sum_probs=77.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+||+||||||+|+++|..|+++|++|+|+|+.. | +.... .. .+. +
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~-----G-G~~~~--------~~--------------~~~-----~- 256 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF-----G-GQVLD--------TM--------------GIE-----N- 256 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-----C-Ceeec--------cC--------------ccc-----c-
Confidence 5899999999999999999999999999997531 1 10000 00 000 0
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
... +. .....++.+.|.+.+. +++++++++|.++...++.+.|.+.++.++.+|.||.|+|..
T Consensus 257 --~~~--~~-----------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 257 --FIS--VP-----------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred --cCC--CC-----------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 000 00 1223344455544332 688999999999998878888998888889999999999986
Q ss_pred h
Q 015331 162 S 162 (409)
Q Consensus 162 s 162 (409)
+
T Consensus 322 ~ 322 (517)
T PRK15317 322 W 322 (517)
T ss_pred c
Confidence 5
No 121
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.05 E-value=2.2e-09 Score=104.78 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=35.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|..++||||||||++|+++|+.+++.|.+|+|+||.+.
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 67789999999999999999999999999999999874
No 122
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.04 E-value=2.2e-09 Score=106.50 Aligned_cols=113 Identities=25% Similarity=0.400 Sum_probs=74.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
|.+.+||+||||||||+++|..|+++|++|+|||+... +..+.... . ..
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~----GG~~~~~~-----------------------~--i~-- 49 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF----GGQITITS-----------------------E--VV-- 49 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC----CceEEecc-----------------------c--cc--
Confidence 77789999999999999999999999999999998531 11110000 0 00
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD 158 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (409)
.++. ...+....+.+.+.+.+. ++++ .+++|+.++.+++.+.|.+.++ .+.++.||.|+
T Consensus 50 ---------~~pg--------~~~~~~~~l~~~l~~~~~~~gv~~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlAT 110 (555)
T TIGR03143 50 ---------NYPG--------ILNTTGPELMQEMRQQAQDFGVKF-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIAT 110 (555)
T ss_pred ---------cCCC--------CcCCCHHHHHHHHHHHHHHcCCEE-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECC
Confidence 0000 001223344444443321 5666 4778988888777677877666 58999999999
Q ss_pred CCchH
Q 015331 159 GVNSV 163 (409)
Q Consensus 159 G~~s~ 163 (409)
|.++.
T Consensus 111 Ga~p~ 115 (555)
T TIGR03143 111 GASPR 115 (555)
T ss_pred CCccC
Confidence 98753
No 123
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.03 E-value=3.4e-08 Score=96.14 Aligned_cols=60 Identities=33% Similarity=0.532 Sum_probs=45.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc--------ce----eEE----echhHHHHHHHcCCchHH
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--------GF----AIT----LWTNAWRALDAVGISDSL 65 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~----~~~----~~~~~~~~l~~~gl~~~~ 65 (409)
+|+|||||++||++|+.|+++|++|+|+|+++.++.. +. |.. ..++..++++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 5899999999999999999999999999998865321 11 000 234577888889887654
No 124
>PLN02976 amine oxidase
Probab=99.02 E-value=1.4e-07 Score=98.74 Aligned_cols=36 Identities=42% Similarity=0.651 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||++|+++|+.|++.|++|+|||+.+.+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 479999999999999999999999999999998654
No 125
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.02 E-value=3.3e-08 Score=96.20 Aligned_cols=59 Identities=29% Similarity=0.433 Sum_probs=45.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcc------------eeE----EechhHHHHHHHcCCchH
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTG------------FAI----TLWTNAWRALDAVGISDS 64 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~------------~~~----~~~~~~~~~l~~~gl~~~ 64 (409)
+|+|||||++||++|+.|+++|++|+|+|+.+.++... .|. ...++..++++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 58999999999999999999999999999987543211 111 123677889999998643
No 126
>PLN02529 lysine-specific histone demethylase 1
Probab=99.02 E-value=4.5e-08 Score=98.49 Aligned_cols=36 Identities=36% Similarity=0.666 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||++|+++|..|+++|++|+|+|+++.+
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 579999999999999999999999999999998753
No 127
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.01 E-value=5.1e-09 Score=102.01 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=83.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc-CCcceeEEechhHHH-HHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL-RVTGFAITLWTNAWR-ALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~-~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
+||+|||||+||+.+|..+++.|.+|+|+|++... ...+|.-.+...+.. +.++++..............+.+...+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999987532 111121111110111 2222211110000000000111111100
Q ss_pred CcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEe-C-CeEEEEEcCCCEEecCEEEEc
Q 015331 83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEES-G-LFKLVNLADGAVFKTKVLIGC 157 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~-~-~~~~v~~~~g~~~~ad~vV~A 157 (409)
.. ... . ......+++..+.+.+.+.+ +++.++.+ .|+++..+ + ....|.+.+|..+.|+.||+|
T Consensus 81 sk-------gpA--V-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILA 149 (617)
T TIGR00136 81 SK-------GPA--V-RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIIT 149 (617)
T ss_pred CC-------CCc--c-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEc
Confidence 00 000 0 01113678888888886654 35667554 67777544 3 445688888889999999999
Q ss_pred CCCch
Q 015331 158 DGVNS 162 (409)
Q Consensus 158 dG~~s 162 (409)
+|.+.
T Consensus 150 TGtfL 154 (617)
T TIGR00136 150 TGTFL 154 (617)
T ss_pred cCccc
Confidence 99995
No 128
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.00 E-value=5.5e-09 Score=102.85 Aligned_cols=111 Identities=23% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
..+||+||||||||+++|..|++.|++|+|+|... + |. ... .. .+..+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~--G--G~--~~~--------~~--------------~~~~~---- 258 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI--G--GQ--VKD--------TV--------------GIENL---- 258 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--C--Cc--ccc--------Cc--------------Ccccc----
Confidence 35899999999999999999999999999997421 1 10 000 00 00000
Q ss_pred CcccccccccccCCCCCccccccCHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331 83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV 160 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (409)
.. .. .....++.+.+.+.+ .+++++.+++|.+++..++.+.|++.++..+.+|.||.|+|.
T Consensus 259 ----~~--~~-----------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa 321 (515)
T TIGR03140 259 ----IS--VP-----------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA 321 (515)
T ss_pred ----cc--cC-----------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 00 00 011223333333322 268999999999998887788888888888999999999998
Q ss_pred ch
Q 015331 161 NS 162 (409)
Q Consensus 161 ~s 162 (409)
..
T Consensus 322 ~~ 323 (515)
T TIGR03140 322 RW 323 (515)
T ss_pred Cc
Confidence 64
No 129
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.00 E-value=7.7e-09 Score=95.89 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=53.8
Q ss_pred ccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCe-EEEEEcC-----CCEEecCEEEEcCCCchH-hHhHhCCCCC
Q 015331 104 SVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLF-KLVNLAD-----GAVFKTKVLIGCDGVNSV-VAKWLGFKKP 173 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~-~~v~~~~-----g~~~~ad~vV~AdG~~s~-vr~~lg~~~~ 173 (409)
-++-..|-+.|.+.+ ++.+++++++|+++++.+++ |.|++.+ ..++++++|++..|..|. +.+..|+++.
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~ 256 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEG 256 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhh
Confidence 355555666665544 46899999999999998766 9988743 247999999999999984 5667777654
Q ss_pred ccc
Q 015331 174 AFA 176 (409)
Q Consensus 174 ~~~ 176 (409)
.-+
T Consensus 257 ~gy 259 (488)
T PF06039_consen 257 KGY 259 (488)
T ss_pred ccc
Confidence 433
No 130
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.99 E-value=7.6e-09 Score=84.91 Aligned_cols=140 Identities=20% Similarity=0.155 Sum_probs=77.9
Q ss_pred EEECCCHHHHHHHHHHHHc-----CCceEEEeCCCccCCcceeEEechh-HHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 8 VIVGAGIAGLTTSLALHRL-----GIRSLVLESSESLRVTGFAITLWTN-AWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 8 vIIGgG~aGl~~A~~L~~~-----g~~V~v~E~~~~~~~~~~~~~~~~~-~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+||||||+|++++..|.+. ..+|+|||+.+. +.|..+.+. ....+- +...........-.+..+..|-
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~----G~G~~~~~~~~~~~ll--N~~a~~~s~~~~~~~~~f~~Wl 74 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF----GAGGAYRPDQPPSHLL--NTPADQMSLFPDDPGDDFVDWL 74 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc----cccccCCCCCChHHhh--cccccccccccccCCCCHHHHH
Confidence 5999999999999999887 468999998543 333333221 111111 1110000000000001111111
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhh-------CC-CCeEE-eCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERE-------LP-SGTIR-YSSKVVSVEESGLFKLVNLADGAVFKTK 152 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~-------~~-~~~i~-~~~~v~~v~~~~~~~~v~~~~g~~~~ad 152 (409)
..... .. .........++|..+-++|.+. ++ ++++. ...+|+++...++++.|.+.+|..+.+|
T Consensus 75 ~~~~~-----~~--~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d 147 (156)
T PF13454_consen 75 RANGA-----DE--AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD 147 (156)
T ss_pred HhcCc-----cc--ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence 00000 00 0001112256666555555432 22 34443 4779999999999999999999999999
Q ss_pred EEEEcCCC
Q 015331 153 VLIGCDGV 160 (409)
Q Consensus 153 ~vV~AdG~ 160 (409)
.||.|+|.
T Consensus 148 ~VvLa~Gh 155 (156)
T PF13454_consen 148 AVVLATGH 155 (156)
T ss_pred EEEECCCC
Confidence 99999994
No 131
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.99 E-value=1.3e-08 Score=99.98 Aligned_cols=38 Identities=34% Similarity=0.563 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
.++||||||||++|+++|+.+++.|.+|+|+||.+...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G 97 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG 97 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 36899999999999999999999999999999988643
No 132
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.98 E-value=1.3e-07 Score=83.53 Aligned_cols=37 Identities=30% Similarity=0.545 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCccC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESLR 40 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~~ 40 (409)
++||+|||||..|+++|+-|+++ |++|+|+|++....
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 57999999999999999999763 79999999998653
No 133
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.98 E-value=5.3e-08 Score=98.46 Aligned_cols=36 Identities=36% Similarity=0.646 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||++|+++|+.|+++|++|+|+|++..+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 578999999999999999999999999999998765
No 134
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.96 E-value=1.2e-08 Score=98.95 Aligned_cols=34 Identities=35% Similarity=0.701 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCcc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESL 39 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~ 39 (409)
||||||||++|+++|+.++++| .+|+|+||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 8999999999999999999999 999999998764
No 135
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.95 E-value=4e-09 Score=103.01 Aligned_cols=36 Identities=28% Similarity=0.636 Sum_probs=34.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
|.+.|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 778999999999999999999999999999999985
No 136
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.93 E-value=7.6e-09 Score=100.79 Aligned_cols=39 Identities=31% Similarity=0.584 Sum_probs=36.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
|+.++||+||||||+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~ 39 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 778899999999999999999999999999999987543
No 137
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.92 E-value=3.3e-08 Score=95.12 Aligned_cols=38 Identities=32% Similarity=0.544 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
|..++||||||+|.|||++|+.++ .|.+|+|+||.+..
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 666799999999999999999985 79999999998754
No 138
>PLN03000 amine oxidase
Probab=98.92 E-value=4.3e-07 Score=92.12 Aligned_cols=36 Identities=39% Similarity=0.671 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||++|+.+|..|++.|++|+|+|+++.+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 479999999999999999999999999999998764
No 139
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.90 E-value=1.2e-07 Score=87.90 Aligned_cols=38 Identities=45% Similarity=0.706 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLR 40 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~ 40 (409)
...+|||||||+|||+||..|.+.| .+|+|+|..+.++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 3468999999999999999999665 5899999988653
No 140
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.89 E-value=1e-08 Score=95.83 Aligned_cols=124 Identities=17% Similarity=0.234 Sum_probs=77.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc--------ceeEEechhHHHHHHHcCCch-HHHhhcccccCe
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT--------GFAITLWTNAWRALDAVGISD-SLRQQHIQLQGM 75 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~--------~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~~~ 75 (409)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..... ......+..+...+...|++. ++...+. .
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----l 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----L 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----h
Confidence 59999999999999999999999999999987654221 122334445566777788775 3333222 1
Q ss_pred EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecC
Q 015331 76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTK 152 (409)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad 152 (409)
.+... + ....+ ......++|..+.+.|.+.+ ++++++ ..+|+++. + +
T Consensus 79 ~~~aa-d-----~~~vP------A~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~-~----------~------ 128 (436)
T PRK05335 79 IMEAA-D-----AHRVP------AGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP-E----------D------ 128 (436)
T ss_pred heecc-c-----ccCCC------CccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc-c----------C------
Confidence 11110 0 00011 11123678888888888765 456776 55777764 1 1
Q ss_pred EEEEcCCCch
Q 015331 153 VLIGCDGVNS 162 (409)
Q Consensus 153 ~vV~AdG~~s 162 (409)
.||+|+|..+
T Consensus 129 ~viiatG~~~ 138 (436)
T PRK05335 129 ITIIATGPLT 138 (436)
T ss_pred CEEEeCCCCc
Confidence 6777777754
No 141
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.89 E-value=7.6e-08 Score=92.12 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=61.4
Q ss_pred ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCchHh-HhHhCCCCCcccCce
Q 015331 104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFKKPAFAGRS 179 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~~~~~~~~~~ 179 (409)
.++...+++.|...+. ++.|..++.|+++... ++.+.|.+..|. +++..+|+|+|.|... -+..+...+-.+-..
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H 261 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPLVPMHH 261 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHHHhhhhcCCcccceeeee
Confidence 6888889999887664 7899999999999754 455678888886 9999999999999853 444466655554444
Q ss_pred eEEEeeecC
Q 015331 180 DIRGCTDFK 188 (409)
Q Consensus 180 ~~~~~~~~~ 188 (409)
++.-....+
T Consensus 262 ~YvvT~~Ie 270 (856)
T KOG2844|consen 262 AYVVTSRIE 270 (856)
T ss_pred eEEEecccC
Confidence 444333333
No 142
>PRK06370 mercuric reductase; Validated
Probab=98.89 E-value=9.1e-09 Score=100.28 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=34.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|+.++||+||||||+|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 6778999999999999999999999999999999864
No 143
>PRK10262 thioredoxin reductase; Provisional
Probab=98.88 E-value=2.9e-08 Score=92.04 Aligned_cols=112 Identities=18% Similarity=0.263 Sum_probs=69.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
++.+||+||||||||+++|..|+++|++|++||+.. ... . +... ...+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg--~-~~~~-------------------------~~~~~-- 52 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGG--Q-LTTT-------------------------TEVEN-- 52 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCC--c-eecC-------------------------ceECC--
Confidence 467899999999999999999999999999999542 211 0 0000 00000
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG 159 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG 159 (409)
++.. ...++...+.+.+.+... +.++..+ +|..++..++.++++..++ .+.+|.||.|+|
T Consensus 53 ---------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG 114 (321)
T PRK10262 53 ---------WPGD-------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATG 114 (321)
T ss_pred ---------CCCC-------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCC
Confidence 0000 001222333333333221 3455555 5777887777777766544 689999999999
Q ss_pred Cch
Q 015331 160 VNS 162 (409)
Q Consensus 160 ~~s 162 (409)
...
T Consensus 115 ~~~ 117 (321)
T PRK10262 115 ASA 117 (321)
T ss_pred CCC
Confidence 875
No 144
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.87 E-value=2.4e-08 Score=98.77 Aligned_cols=37 Identities=43% Similarity=0.686 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 3589999999999999999999999999999998754
No 145
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.87 E-value=4.5e-08 Score=97.77 Aligned_cols=34 Identities=35% Similarity=0.635 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
||+|||||+||+++|+.+++.|.+|+|+||.+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 8999999999999999999999999999998653
No 146
>PRK09897 hypothetical protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=99.59 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=77.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechh--HHHHHHHc---CCchHHHhhcccccCeEE
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTN--AWRALDAV---GISDSLRQQHIQLQGMVV 77 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~--~~~~l~~~---gl~~~~~~~~~~~~~~~~ 77 (409)
.+|+||||||+|+++|..|.+.+ .+|+|||++..+ |.|..+... +..++-.. .+.. ....+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~---G~G~ays~~~~~~~L~~N~~~~~~p~---------~~~~f 69 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA---GVGMPYSDEENSKMMLANIASIEIPP---------IYCTY 69 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC---CcceeecCCCChHHHHhcccccccCC---------ChHHH
Confidence 48999999999999999998864 589999997653 334444431 22222111 0100 00001
Q ss_pred EeccCCcc---ccc--ccccccCCCCCccccccC----HHHHHHHHHhhCC--C--CeEEeCceEEEEEEeCCeEEEEEc
Q 015331 78 ASSVSCQP---ASE--ISFKTKGNRGGHEVRSVK----RSLLMEALERELP--S--GTIRYSSKVVSVEESGLFKLVNLA 144 (409)
Q Consensus 78 ~~~~~~~~---~~~--~~~~~~~~~~~~~~~~i~----r~~l~~~l~~~~~--~--~~i~~~~~v~~v~~~~~~~~v~~~ 144 (409)
..|..... ... ....... ...+..+.+. +..+. .+.+.++ + +.++.+++|++++..++++.|++.
T Consensus 70 ~~Wl~~~~~~~~~~~g~~~~~l~-~~~f~PR~l~G~YL~~~f~-~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~ 147 (534)
T PRK09897 70 LEWLQKQEDSHLQRYGVKKETLH-DRQFLPRILLGEYFRDQFL-RLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATN 147 (534)
T ss_pred HHHhhhhhHHHHHhcCCcceeec-CCccCCeecchHHHHHHHH-HHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEEC
Confidence 11100000 000 0000000 0001111111 22222 2333322 2 577889999999999889999886
Q ss_pred C-CCEEecCEEEEcCCCc
Q 015331 145 D-GAVFKTKVLIGCDGVN 161 (409)
Q Consensus 145 ~-g~~~~ad~vV~AdG~~ 161 (409)
+ +..+.+|.||.|+|..
T Consensus 148 ~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 148 QDLPSETFDLAVIATGHV 165 (534)
T ss_pred CCCeEEEcCEEEECCCCC
Confidence 5 4679999999999964
No 147
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.86 E-value=1e-08 Score=99.77 Aligned_cols=37 Identities=27% Similarity=0.569 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+ +|||+||||||+|+.+|..++++|.+|+|+|+...
T Consensus 1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~ 37 (466)
T PRK06115 1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRST 37 (466)
T ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 54 59999999999999999999999999999997543
No 148
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.86 E-value=4.7e-08 Score=97.44 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEE----EEEcCCC--EEecCEEEEcCCCchHh
Q 015331 108 SLLMEALEREL---PSGTIRYSSKVVSVEESGLFKL----VNLADGA--VFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 108 ~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~----v~~~~g~--~~~ad~vV~AdG~~s~v 164 (409)
..+...|.+.+ ++++++.++.++++..+++.+. +...++. .+.|+.||.|+|..|.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 34556666543 3678999999999887666543 2334564 68999999999999865
No 149
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.85 E-value=3.7e-08 Score=95.79 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+||+|||||+||+++|+.+++.|.+|+|+||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999864
No 150
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.84 E-value=5.6e-08 Score=95.16 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=41.8
Q ss_pred HHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEE-EEEcC-C--CEEecCEEEEcCCCchHh
Q 015331 108 SLLMEALEREL---PSGTIRYSSKVVSVEESGLFKL-VNLAD-G--AVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 108 ~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~-v~~~~-g--~~~~ad~vV~AdG~~s~v 164 (409)
..+.+.|.+.+ +++++++++.|+++..+++.+. |...+ + ..+.++.||.|+|.+|.+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 45666666654 3689999999999987665543 43332 2 368999999999999975
No 151
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=7.5e-08 Score=96.17 Aligned_cols=39 Identities=31% Similarity=0.523 Sum_probs=34.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC---CceEEEeCCCccC
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLG---IRSLVLESSESLR 40 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g---~~V~v~E~~~~~~ 40 (409)
+.++||+|||||+|||++|+.+++.| .+|+|+||.+..+
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 35689999999999999999999998 8999999987543
No 152
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.83 E-value=2.9e-08 Score=98.61 Aligned_cols=37 Identities=41% Similarity=0.721 Sum_probs=35.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|+.++||+|||+|.|||++|+.+++.|.+|+|+||.+
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 7888999999999999999999999999999999988
No 153
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.83 E-value=1e-07 Score=95.51 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=81.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcce--eE-Eec----h--hHHHHHHHc-----CCch-HHH
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGF--AI-TLW----T--NAWRALDAV-----GISD-SLR 66 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~--~~-~~~----~--~~~~~l~~~-----gl~~-~~~ 66 (409)
++||+|||||+|||++|+.+++. |.+|+|+||.+..+.... +. .+. . ......+.+ ++.+ ++.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 47999999999999999999998 999999999875332210 10 111 0 011111111 1111 000
Q ss_pred h----hc-c-----cccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEE
Q 015331 67 Q----QH-I-----QLQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVE 133 (409)
Q Consensus 67 ~----~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~ 133 (409)
. .. . .-.++.+....++... . . ......+....+.+.|.+.+ .++++++++.|+++.
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~----~--~----g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li 160 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYV----R--R----GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLL 160 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCcc----c--c----CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEE
Confidence 0 00 0 0012222211111100 0 0 00000123445666665544 248999999999987
Q ss_pred EeCCeEE-E---EEcCCC--EEecCEEEEcCCCchH
Q 015331 134 ESGLFKL-V---NLADGA--VFKTKVLIGCDGVNSV 163 (409)
Q Consensus 134 ~~~~~~~-v---~~~~g~--~~~ad~vV~AdG~~s~ 163 (409)
.+++.+. | ...++. .+.|+.||.|+|..+.
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 161 VDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 6665432 2 233453 6899999999998874
No 154
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.82 E-value=6e-08 Score=93.40 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEc---CCC--EEecCEEEEcCCCchH
Q 015331 107 RSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLA---DGA--VFKTKVLIGCDGVNSV 163 (409)
Q Consensus 107 r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~---~g~--~~~ad~vV~AdG~~s~ 163 (409)
-..+.+.|.+.+. +++|+++++++++..++++++ |... +++ +++|+.||.|+|..+.
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 4566666666552 689999999999988877654 3333 444 6789999999999995
No 155
>PRK06116 glutathione reductase; Validated
Probab=98.82 E-value=4.2e-08 Score=95.28 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=34.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
|+.++||+||||||+|+++|..|+++|.+|+|||+.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 777899999999999999999999999999999986
No 156
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=8.3e-08 Score=95.77 Aligned_cols=37 Identities=32% Similarity=0.645 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~ 39 (409)
.++||+|||||+||++||+.+++. |.+|+|+||....
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~ 40 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI 40 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence 468999999999999999999987 4899999998653
No 157
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=7.3e-08 Score=96.91 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||||.|||++|+.+++.|.+|+|+|+...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 579999999999999999999999999999986544
No 158
>PRK07121 hypothetical protein; Validated
Probab=98.81 E-value=1.5e-07 Score=92.33 Aligned_cols=37 Identities=35% Similarity=0.593 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3589999999999999999999999999999998764
No 159
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.80 E-value=5.7e-08 Score=94.14 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++++||+||||||+|+++|..|+++|.+|+|||+.+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 147999999999999999999999999999999875
No 160
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.80 E-value=1.5e-07 Score=67.62 Aligned_cols=80 Identities=28% Similarity=0.394 Sum_probs=62.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCcc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQP 85 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 85 (409)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+... +.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------~~~---------------------- 40 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------FDP---------------------- 40 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT------------------SSH----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh------------------cCH----------------------
Confidence 5899999999999999999999999999988854310 000
Q ss_pred cccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC
Q 015331 86 ASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG 146 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g 146 (409)
-.+..+.+.|.+. ++++++++.+..++.++++++|+++||
T Consensus 41 -------------------~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 41 -------------------DAAKILEEYLRKR--GVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp -------------------HHHHHHHHHHHHT--TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred -------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 0123345555554 899999999999999988777888876
No 161
>PRK14694 putative mercuric reductase; Provisional
Probab=98.79 E-value=1.5e-08 Score=98.86 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.++||+||||||+|+++|..|+++|.+|+|||+..
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 46899999999999999999999999999999864
No 162
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.79 E-value=1.4e-07 Score=93.80 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=41.7
Q ss_pred HHHHHHHHhhC---CCCeEEeCceEEEEEEeCCeEE----EEEcCCC--EEecCEEEEcCCCchHh
Q 015331 108 SLLMEALEREL---PSGTIRYSSKVVSVEESGLFKL----VNLADGA--VFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 108 ~~l~~~l~~~~---~~~~i~~~~~v~~v~~~~~~~~----v~~~~g~--~~~ad~vV~AdG~~s~v 164 (409)
..+.+.|.+.+ +++.++.++.++++..+++.+. +...+|+ .+.|+.||.|+|..+.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45666666544 4678999999999887666543 2334564 68899999999999864
No 163
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.78 E-value=4e-08 Score=95.86 Aligned_cols=39 Identities=33% Similarity=0.554 Sum_probs=35.1
Q ss_pred CC-CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 1 ME-EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 1 M~-~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
|+ .++||+||||||+|+.+|+.|+++|.+|+|||+.+.+
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 44 4799999999999999999999999999999987654
No 164
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.78 E-value=1.2e-07 Score=90.64 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=38.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV 41 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~ 41 (409)
|.+++||+|||+|++|+.+|..|++.|.+|+++|+++..+.
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 78899999999999999999999999999999999986543
No 165
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.78 E-value=2e-08 Score=97.25 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 689999999999999999999999999999985
No 166
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.78 E-value=1.6e-08 Score=69.89 Aligned_cols=34 Identities=38% Similarity=0.623 Sum_probs=30.4
Q ss_pred EECCCHHHHHHHHHHHHcCCceEEEeCCCccCCc
Q 015331 9 IVGAGIAGLTTSLALHRLGIRSLVLESSESLRVT 42 (409)
Q Consensus 9 IIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~ 42 (409)
|||||++||++|+.|+++|++|+|+|+++.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 8999999999999999999999999999876543
No 167
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.78 E-value=3.7e-07 Score=89.07 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=39.0
Q ss_pred CCeEEeCceEEEEEEeCCeEEEEEcCC--CEEecCEEEEcCCCchHhH
Q 015331 120 SGTIRYSSKVVSVEESGLFKLVNLADG--AVFKTKVLIGCDGVNSVVA 165 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~s~vr 165 (409)
+++++.+++|.+++.+++.+.+.+.+| .++.+|.||.|.|..+.+.
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 689999999999988877787877777 4799999999999877543
No 168
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.77 E-value=4.8e-08 Score=95.40 Aligned_cols=35 Identities=29% Similarity=0.620 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLES 35 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
|..++||+||||||+|+++|..+++.|.+|+|+|+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 77789999999999999999999999999999998
No 169
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.76 E-value=1e-08 Score=88.15 Aligned_cols=113 Identities=27% Similarity=0.368 Sum_probs=68.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCcc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQP 85 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 85 (409)
||+||||||||+++|..|++.|.+|+|+|+.+....... .+. ...+.... ......
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~--~~~---~~~~~~~~---~~~~~~---------------- 56 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG--CIP---SPLLVEIA---PHRHEF---------------- 56 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS--HHH---HHHHHHHH---HHHHHH----------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc--ccc---cccccccc---cccccc----------------
Confidence 799999999999999999999999999987764211100 000 00000000 000000
Q ss_pred cccccccccCCCCCccccccCHH--HHHHHHHhhCCCCeEEeCceEEEEEEeCCeE-----EE---EEcCCCEEecCEEE
Q 015331 86 ASEISFKTKGNRGGHEVRSVKRS--LLMEALERELPSGTIRYSSKVVSVEESGLFK-----LV---NLADGAVFKTKVLI 155 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~i~r~--~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~-----~v---~~~~g~~~~ad~vV 155 (409)
.... .+.+.+... +++++.++++.+++.....+ .+ ...++.++.+|+||
T Consensus 57 -------------------~~~~~~~~~~~~~~~--~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lv 115 (201)
T PF07992_consen 57 -------------------LPARLFKLVDQLKNR--GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLV 115 (201)
T ss_dssp -------------------HHHHHGHHHHHHHHH--THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEE
T ss_pred -------------------ccccccccccccccc--eEEEeeccccccccccccccccCcccceeeccCCceEecCCeee
Confidence 0000 233333322 67888889999998877742 22 22345589999999
Q ss_pred EcCCCchH
Q 015331 156 GCDGVNSV 163 (409)
Q Consensus 156 ~AdG~~s~ 163 (409)
.|+|..+.
T Consensus 116 iAtG~~~~ 123 (201)
T PF07992_consen 116 IATGSRPR 123 (201)
T ss_dssp EESTEEEE
T ss_pred ecCccccc
Confidence 99997653
No 170
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.75 E-value=4.4e-08 Score=94.86 Aligned_cols=35 Identities=20% Similarity=0.504 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++|||+||||||+|+.+|..|++.|.+|+|+|+..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 46999999999999999999999999999999864
No 171
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.75 E-value=8.3e-08 Score=93.60 Aligned_cols=35 Identities=23% Similarity=0.578 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|||+||||||+|+++|..|+++|.+|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46899999999999999999999999999999875
No 172
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=2e-08 Score=97.95 Aligned_cols=37 Identities=30% Similarity=0.561 Sum_probs=34.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|++++||+||||||+|+++|..|+++|.+|+|+|++.
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 6677999999999999999999999999999999863
No 173
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.72 E-value=3.4e-08 Score=94.16 Aligned_cols=38 Identities=32% Similarity=0.626 Sum_probs=35.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+.+||++||||||+|..+|..+++.|.+|.++|+...
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~ 38 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER 38 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCC
Confidence 67789999999999999999999999999999999963
No 174
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=3e-07 Score=92.45 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||||+||+++|+.+++.|.+|+|+||.+..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 579999999999999999999999999999998643
No 175
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.71 E-value=1.9e-07 Score=91.67 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|.|||++|+.+++ |.+|+|+||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~ 37 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR 37 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence 36899999999999999999976 8999999998754
No 176
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.70 E-value=8.6e-07 Score=88.14 Aligned_cols=37 Identities=30% Similarity=0.624 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 5789999999999999999999999999999998764
No 177
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=3.3e-07 Score=91.18 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.++||+|||+|.||+++|+.+++.|.+|+|+||.+.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 468999999999999999999999999999999864
No 178
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.69 E-value=7.6e-08 Score=93.19 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=33.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++++||+||||||||+++|..|++.|.+|+|||+.+.
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 1479999999999999999999999999999998864
No 179
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=3.3e-07 Score=90.98 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++||+|||||.||+++|+.+ +.|.+|+|+||.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 57999999999999999999 89999999999764
No 180
>PLN02507 glutathione reductase
Probab=98.67 E-value=1.8e-07 Score=91.68 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES 35 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
+|||+||||||+|+.+|..++++|.+|+|+|+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 48999999999999999999999999999996
No 181
>PRK13748 putative mercuric reductase; Provisional
Probab=98.66 E-value=2.8e-07 Score=92.20 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
.++||+||||||+|+++|..|+++|.+|+|||++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999987
No 182
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.66 E-value=5.5e-07 Score=89.98 Aligned_cols=37 Identities=24% Similarity=0.569 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4689999999999999999999999999999998753
No 183
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.64 E-value=4.5e-07 Score=91.43 Aligned_cols=37 Identities=30% Similarity=0.519 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+||+|||||.|||++|+.+++.|.+|+|+|+.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999988754
No 184
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.64 E-value=1.1e-07 Score=94.97 Aligned_cols=37 Identities=27% Similarity=0.622 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||||||+|++|+++|+.++++|.+|+|+||.+..
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4689999999999999999999999999999998764
No 185
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=6.2e-07 Score=89.78 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++||+|||||+|||++|+.+++.|.+|+|+||...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 57999999999999999999999999999999864
No 186
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=4.6e-08 Score=92.00 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=82.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc-cCCcceeEEechhHHHH-HHHcCCchHHHhhcccccCeEEE
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGFAITLWTNAWRA-LDAVGISDSLRQQHIQLQGMVVA 78 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~-~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~~~~~~~~ 78 (409)
|++.+||+|||||.||+-+|++.+|.|.+++++-.+.+ ....+|.-++...+.-. .++++...-+........++.+.
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence 56679999999999999999999999999999976653 22222322222111111 12221111111111111222222
Q ss_pred eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEEEE-eCC-eEEEEEcCCCEEecCE
Q 015331 79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSVEE-SGL-FKLVNLADGAVFKTKV 153 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v~~-~~~-~~~v~~~~g~~~~ad~ 153 (409)
..+...-... .......++..+.+.+.+.+ ++..++.+ .|.++.. +++ .+.|.+.+|..+.|+.
T Consensus 81 ~LN~sKGPAV----------ra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~a 149 (621)
T COG0445 81 MLNSSKGPAV----------RAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKA 149 (621)
T ss_pred hccCCCcchh----------cchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCE
Confidence 1111110000 00111345555555555444 34555555 5666655 443 4678999999999999
Q ss_pred EEEcCCCc
Q 015331 154 LIGCDGVN 161 (409)
Q Consensus 154 vV~AdG~~ 161 (409)
||.++|.+
T Consensus 150 VVlTTGTF 157 (621)
T COG0445 150 VVLTTGTF 157 (621)
T ss_pred EEEeeccc
Confidence 99999976
No 187
>PRK08275 putative oxidoreductase; Provisional
Probab=98.62 E-value=5.9e-07 Score=89.34 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~ 39 (409)
++||+|||||.||++||+.+++. |.+|+|+||.+..
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 47999999999999999999987 6899999998753
No 188
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.62 E-value=6.6e-07 Score=89.76 Aligned_cols=36 Identities=36% Similarity=0.489 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||||.|||++|+.+++.|.+|+|+||....
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 579999999999999999999999999999998753
No 189
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=7.2e-07 Score=89.18 Aligned_cols=37 Identities=32% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|..++||+|||||+||+++|+.+++. .+|+|+||...
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 34568999999999999999999986 89999999864
No 190
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.61 E-value=1.5e-07 Score=90.96 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
+.+|+++++|+.|+.++++++|.+.+|.++.||.||.|.......
T Consensus 223 g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLK 267 (450)
T ss_dssp GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHH
T ss_pred CceeecCCcceeccccccccccccccceEEecceeeecCchhhhh
Confidence 458999999999999999999999999999999999888865543
No 191
>PLN02815 L-aspartate oxidase
Probab=98.59 E-value=7.8e-07 Score=88.54 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+|.|||++|+.+++.| +|+|+||.+..
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 579999999999999999999999 99999998754
No 192
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.58 E-value=8.1e-07 Score=89.20 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 579999999999999999999999999999998654
No 193
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=1.3e-06 Score=87.20 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 3579999999999999999999999999999998643
No 194
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.56 E-value=4.7e-07 Score=85.35 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 48999999999999999999999999999987653
No 195
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.56 E-value=7.3e-07 Score=86.61 Aligned_cols=110 Identities=17% Similarity=0.276 Sum_probs=69.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
+|+|||||++|+++|..|++.+ .+|+|||+++......++ + + .+. ....
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~---------------~---------~----~~~-~~~~ 52 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACG---------------L---------P----YFV-GGFF 52 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCC---------------C---------c----eEe-cccc
Confidence 7999999999999999999875 589999988753211000 0 0 000 0000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc-CCCEEe--cCEEEEcCCC
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA-DGAVFK--TKVLIGCDGV 160 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~-~g~~~~--ad~vV~AdG~ 160 (409)
.. ... .+.+ ..+.+.+ .+++++.+++|+.++.+++.+.+... ++.++. +|.||.|+|.
T Consensus 53 ~~-------------~~~--~~~~--~~~~~~~--~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~ 113 (444)
T PRK09564 53 DD-------------PNT--MIAR--TPEEFIK--SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA 113 (444)
T ss_pred CC-------------HHH--hhcC--CHHHHHH--CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC
Confidence 00 000 0111 0122222 26889999999999988777776542 355666 9999999998
Q ss_pred chH
Q 015331 161 NSV 163 (409)
Q Consensus 161 ~s~ 163 (409)
...
T Consensus 114 ~~~ 116 (444)
T PRK09564 114 RPI 116 (444)
T ss_pred CCC
Confidence 653
No 196
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.55 E-value=2.2e-06 Score=84.50 Aligned_cols=36 Identities=22% Similarity=0.585 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||||||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36899999999 9999999999999999999998764
No 197
>PTZ00058 glutathione reductase; Provisional
Probab=98.55 E-value=2.3e-07 Score=91.56 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|||+||||||+|.++|..+++.|.+|+|||++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 36899999999999999999999999999999863
No 198
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.1e-06 Score=87.79 Aligned_cols=35 Identities=43% Similarity=0.573 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 57999999999999999999999999999999753
No 199
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.55 E-value=6.9e-07 Score=87.89 Aligned_cols=34 Identities=35% Similarity=0.433 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.++||+|||+|.|||++|+.++ |.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3579999999999999999997 569999999875
No 200
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=1.6e-06 Score=86.67 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
+++||+|||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4679999999999999999999999999999988653
No 201
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.54 E-value=2.7e-07 Score=90.02 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+||+||||||+|+++|..|+++|.+|+|+|+.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999875
No 202
>PRK14727 putative mercuric reductase; Provisional
Probab=98.54 E-value=3.8e-07 Score=89.21 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+||||||+|+.+|..|+++|.+|+|+|+.+.+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 3689999999999999999999999999999987543
No 203
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.54 E-value=4.7e-07 Score=79.34 Aligned_cols=166 Identities=22% Similarity=0.279 Sum_probs=93.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCC---------cceeEEechhHHHH-HHHcC--C-chHHHh
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRV---------TGFAITLWTNAWRA-LDAVG--I-SDSLRQ 67 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~---------~~~~~~~~~~~~~~-l~~~g--l-~~~~~~ 67 (409)
.++|+||||||++|++.|..|.-+ +.+|.|+|+...... ...|+.+.|+++.+ |.--| + ++-..+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e 126 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE 126 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence 468999999999999999999876 899999999876421 13567777766533 00000 0 011111
Q ss_pred hcccc------------------------------cCeEEEeccCCcccccccccccC--CCCCccccccCHHHHHHHHH
Q 015331 68 QHIQL------------------------------QGMVVASSVSCQPASEISFKTKG--NRGGHEVRSVKRSLLMEALE 115 (409)
Q Consensus 68 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~l~ 115 (409)
...+. .+.+.... ....++...-.+ .-..+..-.++...+...+.
T Consensus 127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg---~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ 203 (453)
T KOG2665|consen 127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEG---SEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFG 203 (453)
T ss_pred cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeecc---chhhhcChhhhhhhhhcCCCcceeehHHHHHHHH
Confidence 11111 11222111 011111000000 00011122455555555555
Q ss_pred hhCC--CCeEEeCceEEEEEEeCCe-----EEEEEcCCCEEecCEEEEcCCCchHh-HhHhCCC
Q 015331 116 RELP--SGTIRYSSKVVSVEESGLF-----KLVNLADGAVFKTKVLIGCDGVNSVV-AKWLGFK 171 (409)
Q Consensus 116 ~~~~--~~~i~~~~~v~~v~~~~~~-----~~v~~~~g~~~~ad~vV~AdG~~s~v-r~~lg~~ 171 (409)
+.+. +..+..|-++..+.++.+. ++|.-..+++++++++|.|.|..|-- ....|.+
T Consensus 204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~ 267 (453)
T KOG2665|consen 204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE 267 (453)
T ss_pred HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence 5443 6788899999999877552 44544456789999999999998854 3333443
No 204
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.53 E-value=4e-06 Score=83.35 Aligned_cols=37 Identities=32% Similarity=0.623 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.+++.|.+|+|||+.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998654
No 205
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.53 E-value=1.4e-06 Score=86.22 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|+||+++|+.+++. .+|+|+||....
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 357999999999999999999987 899999998753
No 206
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.52 E-value=2.3e-06 Score=81.18 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=79.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+... . +.+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------~-~~~--------------------- 183 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------L-MPP--------------------- 183 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------------h-CCH---------------------
Confidence 57999999999999999999999999999986632100 0 000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV- 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~- 163 (409)
-....+.+.|.+. +++++++++|.+++.+++.+.+.+.+|+++.+|+||.|+|..+.
T Consensus 184 --------------------~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 184 --------------------EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred --------------------HHHHHHHHHHHhC--CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 0012344444433 78999999999998877778888999999999999999998653
Q ss_pred -hHhHhCCC
Q 015331 164 -VAKWLGFK 171 (409)
Q Consensus 164 -vr~~lg~~ 171 (409)
+.+..|+.
T Consensus 242 ~l~~~~gl~ 250 (377)
T PRK04965 242 ALARRAGLA 250 (377)
T ss_pred HHHHHCCCC
Confidence 44555544
No 207
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.52 E-value=6.1e-06 Score=78.48 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=53.3
Q ss_pred cccCHHHHHHHHHhhCC-CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 103 RSVKRSLLMEALERELP-SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 103 ~~i~r~~l~~~l~~~~~-~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
..++...+...|.+.+. +++++++++|.+++.+++.+.|++.+|.+++||.||.|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 36788889899888765 68999999999999888889999988888999999999999985
No 208
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.52 E-value=4.5e-06 Score=72.43 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC------CceEEEeCCCccC-CcceeE-------------EechhHHHHHHHcCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLG------IRSLVLESSESLR-VTGFAI-------------TLWTNAWRALDAVGIS 62 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g------~~V~v~E~~~~~~-~~~~~~-------------~~~~~~~~~l~~~gl~ 62 (409)
...+|+|||||+.|.++|++|++++ ++|+|||...-.. ..|.+. .+.+-+.++.+++ .
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L--s 86 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEEL--S 86 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHH--H
Confidence 4578999999999999999999987 8999999875321 111111 1112222232322 2
Q ss_pred hHHHhh-cccccCeEEEe----ccCCccccccc----ccc-------cCCCCCccccccCHHHHHHHHHhhCC---CCeE
Q 015331 63 DSLRQQ-HIQLQGMVVAS----SVSCQPASEIS----FKT-------KGNRGGHEVRSVKRSLLMEALERELP---SGTI 123 (409)
Q Consensus 63 ~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~----~~~-------~~~~~~~~~~~i~r~~l~~~l~~~~~---~~~i 123 (409)
+++... ...+.....+. +.+.. ....+ .-. ..........+++...|.+.+++.+. ++++
T Consensus 87 deydGvnnwgYRaltTws~ka~~en~~-p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~l 165 (380)
T KOG2852|consen 87 DEYDGVNNWGYRALTTWSCKADWENTN-PAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKL 165 (380)
T ss_pred HhhcCcccccceeeeEEEEEeecccCC-cccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEE
Confidence 222111 11111111111 01111 11111 000 00011223347888999999988763 4678
Q ss_pred EeCceEEEEEEeCCeEE-EEEc---C-CCEEecCEEEEcCCCchH
Q 015331 124 RYSSKVVSVEESGLFKL-VNLA---D-GAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 124 ~~~~~v~~v~~~~~~~~-v~~~---~-g~~~~ad~vV~AdG~~s~ 163 (409)
.++ +|.++..+.+++. +-.. + ......+.+|++.|.|+.
T Consensus 166 v~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 166 VFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 777 6667753333322 2121 1 235678999999999984
No 209
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.51 E-value=1.1e-06 Score=85.12 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=70.7
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
+|||||||++|+.+|..|++. +.+|+|||+++......++.. .-+ . + .. ...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp---------------~~~-~------~--~~--~~~ 56 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALP---------------YYI-G------E--VV--EDR 56 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcc---------------hhh-c------C--cc--CCH
Confidence 899999999999999999886 679999999875432221110 000 0 0 00 000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC-C--EEecCEEEEcCCC
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG-A--VFKTKVLIGCDGV 160 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g-~--~~~ad~vV~AdG~ 160 (409)
. ....+... .+.++ .+++++.+++|++|+.++..+.+...++ + ++.+|.||.|+|.
T Consensus 57 ~----------------~~~~~~~~----~~~~~-~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs 115 (438)
T PRK13512 57 K----------------YALAYTPE----KFYDR-KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA 115 (438)
T ss_pred H----------------HcccCCHH----HHHHh-CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC
Confidence 0 00011111 22222 2688999999999998888777765432 2 4689999999998
Q ss_pred chH
Q 015331 161 NSV 163 (409)
Q Consensus 161 ~s~ 163 (409)
...
T Consensus 116 ~~~ 118 (438)
T PRK13512 116 SAN 118 (438)
T ss_pred CCC
Confidence 753
No 210
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.51 E-value=1.8e-07 Score=87.58 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=44.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-CcceeEEechhHHHHHHH
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-VTGFAITLWTNAWRALDA 58 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-~~~~~~~~~~~~~~~l~~ 58 (409)
.++||+|||||-.|.-+|+-.+-+|.+|.++|++++-. ..+.+--+-..+.+.|++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek 122 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK 122 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHH
Confidence 45999999999999999999999999999999998753 233444455556666655
No 211
>PRK12839 hypothetical protein; Provisional
Probab=98.50 E-value=3.6e-06 Score=83.76 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|++|+++|+.++++|.+|+|+|+....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998654
No 212
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.50 E-value=2.2e-06 Score=85.83 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=30.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+|||+|+|||++|+.+++.|.+|+|+||.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 79999999999999999999999999999873
No 213
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.50 E-value=3.7e-07 Score=95.23 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|||||||||++|+.|+++|++|+|||+.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 46999999999999999999999999999998764
No 214
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.49 E-value=6.5e-07 Score=86.50 Aligned_cols=58 Identities=17% Similarity=0.028 Sum_probs=40.4
Q ss_pred HHHHHHHHhhC--CCCeEEeCceEEEEEEe--CCeEE-EEEc-CCCEEecCEEEEcCCCchHhH
Q 015331 108 SLLMEALEREL--PSGTIRYSSKVVSVEES--GLFKL-VNLA-DGAVFKTKVLIGCDGVNSVVA 165 (409)
Q Consensus 108 ~~l~~~l~~~~--~~~~i~~~~~v~~v~~~--~~~~~-v~~~-~g~~~~ad~vV~AdG~~s~vr 165 (409)
..+.+.|.+.+ .+++++++++|+++..+ ++.+. |... ++.++.++.||.|+|..+..+
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~ 186 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANR 186 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCH
Confidence 34666665544 26899999999999875 33332 4433 334789999999999876543
No 215
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.49 E-value=1.9e-06 Score=82.31 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEe
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVAS 79 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (409)
+.+.+|+|||||+||+.+|..|++.|. +|+|+++.+....... + +...+...
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-----~----------l~~~~~~~----------- 54 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-----P----------LSKSMLLE----------- 54 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-----C----------CCHHHHCC-----------
Confidence 135689999999999999999999876 7999998764321100 0 10100000
Q ss_pred ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCC
Q 015331 80 SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDG 159 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG 159 (409)
.... .. ..... +.+.+ .+++++.++.|..++.... .|.+.+|.++.+|.||.|+|
T Consensus 55 --~~~~--~~-------------~~~~~----~~~~~--~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATG 109 (396)
T PRK09754 55 --DSPQ--LQ-------------QVLPA----NWWQE--NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATG 109 (396)
T ss_pred --CCcc--cc-------------ccCCH----HHHHH--CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccC
Confidence 0000 00 00111 11222 2689999999999987654 45667888899999999999
Q ss_pred Cch
Q 015331 160 VNS 162 (409)
Q Consensus 160 ~~s 162 (409)
...
T Consensus 110 s~~ 112 (396)
T PRK09754 110 AAA 112 (396)
T ss_pred CCC
Confidence 876
No 216
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.48 E-value=1.1e-06 Score=78.14 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=37.5
Q ss_pred CeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 121 GTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 121 ~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
..+..++.|..+..-++++.+...+|++-++|-||.|+-..-.
T Consensus 232 ~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqA 274 (447)
T COG2907 232 GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQA 274 (447)
T ss_pred ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHH
Confidence 3688899999999999999999999999999999999876543
No 217
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.47 E-value=8.9e-07 Score=86.37 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+++||+||||||+|+++|..|++.|.+|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4699999999999999999999999999999983
No 218
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.47 E-value=1.4e-07 Score=87.35 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=74.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccCCcceeEEechhHH--HHHHHcCCchHHHhhcccccCeEEE--
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVTGFAITLWTNAW--RALDAVGISDSLRQQHIQLQGMVVA-- 78 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~--~~l~~~gl~~~~~~~~~~~~~~~~~-- 78 (409)
.+|+++||.||++|++|..|...+ .++..||+.+....... ..+....+ .+|+ ++.....|.....+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-mll~~~~~q~~fl~------Dlvt~~~P~s~~sflnY 74 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-MLLPGARMQVSFLK------DLVTLRDPTSPFSFLNY 74 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-G--SS-B-SS-TTS------SSSTTT-TTSTTSHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-cCCCCCcccccccc------ccCcCcCCCCcccHHHH
Confidence 479999999999999999999876 89999999886543321 11110000 0111 111111111111110
Q ss_pred eccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCC----eEEEEEc----CCCE
Q 015331 79 SSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGL----FKLVNLA----DGAV 148 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~----~~~v~~~----~g~~ 148 (409)
....++....++. ....+.|.++.+++.-.+. +..++++++|++|+..++ .++|.+. ++.+
T Consensus 75 L~~~~rl~~f~~~---------~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~ 145 (341)
T PF13434_consen 75 LHEHGRLYEFYNR---------GYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGET 145 (341)
T ss_dssp HHHTT-HHHHHHH-----------SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEE
T ss_pred HHHcCChhhhhhc---------CCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeE
Confidence 0011111111111 1125678888887765443 245999999999987654 4888873 3458
Q ss_pred EecCEEEEcCCCchHhHhHh
Q 015331 149 FKTKVLIGCDGVNSVVAKWL 168 (409)
Q Consensus 149 ~~ad~vV~AdG~~s~vr~~l 168 (409)
+.|+.||.|+|....+...+
T Consensus 146 ~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 146 YRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp EEESEEEE----EE---GGG
T ss_pred EEeCeEEECcCCCCCCCcch
Confidence 99999999999665554443
No 219
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.46 E-value=2.3e-07 Score=90.61 Aligned_cols=38 Identities=34% Similarity=0.628 Sum_probs=35.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
+.+||||||||+.||+||..|+++|++|+|+||+..++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 46899999999999999999999999999999988653
No 220
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.46 E-value=2.1e-06 Score=83.66 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=32.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESS 36 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~ 36 (409)
+++|||+||||||+|..+|..+++. |.+|+|+|+.
T Consensus 1 ~~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 1 SKAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CCccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 3579999999999999999999996 9999999984
No 221
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.46 E-value=8.2e-07 Score=87.11 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
|+..|||+||||||+|+.+|..|+++|.+|+|+|+.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 444689999999999999999999999999999973
No 222
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.45 E-value=2e-06 Score=85.26 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||+|||+|.||+++|+.++ .|.+|+|+||.+..
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~ 43 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLK 43 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCC
Confidence 4689999999999999999996 49999999998754
No 223
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.45 E-value=2.8e-07 Score=98.85 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 3589999999999999999999999999999998764
No 224
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.44 E-value=4e-06 Score=83.68 Aligned_cols=37 Identities=32% Similarity=0.618 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||||||+|++|+++|+.++++|.+|+|+||.+..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 4689999999999999999999999999999998754
No 225
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.44 E-value=1.1e-06 Score=90.67 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+||||||||+++|+.|+++|++|+|||+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 368999999999999999999999999999988753
No 226
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.43 E-value=1.1e-06 Score=85.59 Aligned_cols=33 Identities=33% Similarity=0.546 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.||+||||||+|+.+|..++++|.+|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 389999999999999999999999999999875
No 227
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.42 E-value=9.5e-06 Score=80.57 Aligned_cols=36 Identities=36% Similarity=0.732 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++||||||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36899999999 8999999999999999999998754
No 228
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.42 E-value=5.4e-06 Score=82.89 Aligned_cols=36 Identities=31% Similarity=0.638 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
++||+|||+|++|+++|+.++++|.+|+|+|+.+..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999998754
No 229
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.41 E-value=7.6e-06 Score=79.56 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCccC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESLR 40 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~~ 40 (409)
+.+|+|||||+|||++|..|++. |.+|+|+|+.+.++
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 46999999999999999999995 68999999998653
No 230
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.41 E-value=1.2e-06 Score=85.19 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|+||||||+|+++|..|++.|.+|+|+|+.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 899999999999999999999999999998753
No 231
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.40 E-value=3.3e-06 Score=89.43 Aligned_cols=37 Identities=35% Similarity=0.606 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+||+|||||||||++|+.|++.|.+|+|+|+.+.+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999988764
No 232
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.40 E-value=4.6e-06 Score=77.14 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=44.0
Q ss_pred HHHHHHHhhCC--CCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCch
Q 015331 109 LLMEALERELP--SGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 109 ~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
++.+.+.+.+. +++++|+++|.+++..++. ..|++++|.++.+|.||.|-|..+
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 44455555543 6899999999999988774 668889999999999999999876
No 233
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.38 E-value=6.4e-06 Score=80.40 Aligned_cols=100 Identities=23% Similarity=0.319 Sum_probs=76.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... +..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~------------------- 217 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------LDDE------------------- 217 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------CCHH-------------------
Confidence 358999999999999999999999999999987632100 0000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
.+..+.+.|.+. +++++.+++|+.++.+++.+.+++.+|+++.+|.||.|.|..+.
T Consensus 218 ----------------------~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 218 ----------------------ISDALSYHLRDS--GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred ----------------------HHHHHHHHHHHc--CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 012344444433 78999999999998877778888888888999999999998775
Q ss_pred h
Q 015331 164 V 164 (409)
Q Consensus 164 v 164 (409)
.
T Consensus 274 ~ 274 (461)
T PRK05249 274 T 274 (461)
T ss_pred c
Confidence 4
No 234
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.37 E-value=5.4e-06 Score=82.66 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCceEEEeCCCcc
Q 015331 6 DIVIVGAGIAGLTTSLALH----RLGIRSLVLESSESL 39 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~----~~g~~V~v~E~~~~~ 39 (409)
||+|||||.|||+||+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 679999999998753
No 235
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.37 E-value=6.3e-06 Score=80.48 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+... +.++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~-------------------- 214 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------EDKE-------------------- 214 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------CCHH--------------------
Confidence 57999999999999999999999999999987642110 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEEEEcCCCc
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~ 161 (409)
+ ...+.+.|.+. +++++.+++|.+++.+++.+.+.+.++ +++.+|.||.|.|..
T Consensus 215 --------------------~-~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 215 --------------------I-SKLAERALKKR--GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred --------------------H-HHHHHHHHHHc--CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 0 12233444433 789999999999998877787877665 579999999999987
Q ss_pred hHh
Q 015331 162 SVV 164 (409)
Q Consensus 162 s~v 164 (409)
+..
T Consensus 272 p~~ 274 (462)
T PRK06416 272 PNT 274 (462)
T ss_pred cCC
Confidence 654
No 236
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.36 E-value=1.6e-06 Score=81.08 Aligned_cols=147 Identities=18% Similarity=0.096 Sum_probs=79.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--C-CceEEEeCCCccCCcceeEEechhHHHHHHHc-----CCc-hHHHhhcccccCe
Q 015331 5 EDIVIVGAGIAGLTTSLALHRL--G-IRSLVLESSESLRVTGFAITLWTNAWRALDAV-----GIS-DSLRQQHIQLQGM 75 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~--g-~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~-----gl~-~~~~~~~~~~~~~ 75 (409)
++|+|||||++|+.+|..|.+. . -.|.|||+.+. .|+|+.++...-..+-.+ -+. +++.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~---~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~-------- 70 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN---FGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQ-------- 70 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc---cCCCccCCCCCchhhhccccccccccCCCCch--------
Confidence 6999999999999999999884 1 23999998875 456666655332111111 111 11000
Q ss_pred EEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHh-------hCCCC-eEEeCceEEEEEEe--CCeEEEEEcC
Q 015331 76 VVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALER-------ELPSG-TIRYSSKVVSVEES--GLFKLVNLAD 145 (409)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~-------~~~~~-~i~~~~~v~~v~~~--~~~~~v~~~~ 145 (409)
.|+.|-.... .....+.... .....+..|..|-++|.+ +.+.. -.+...+++++... ...+.+...+
T Consensus 71 ~F~~WL~~~~-~~~~d~~~~~--~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~ 147 (474)
T COG4529 71 DFVRWLQKQL-QRYRDPEDIN--HDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTAD 147 (474)
T ss_pred HHHHHHHhcc-cccCChhhcC--CccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCC
Confidence 0111101000 0000000000 001113344444444433 22222 33456677777766 6678899999
Q ss_pred CCEEecCEEEEcCCCchHhH
Q 015331 146 GAVFKTKVLIGCDGVNSVVA 165 (409)
Q Consensus 146 g~~~~ad~vV~AdG~~s~vr 165 (409)
|....||.+|.|+|..-+..
T Consensus 148 g~~~~ad~~Vlatgh~~~~~ 167 (474)
T COG4529 148 GPSEIADIIVLATGHSAPPA 167 (474)
T ss_pred CCeeeeeEEEEeccCCCCCc
Confidence 99999999999999655443
No 237
>PLN02546 glutathione reductase
Probab=98.36 E-value=1.5e-06 Score=85.79 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES 35 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
+|||+||||||+|..+|..++++|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 238
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.35 E-value=3e-06 Score=84.99 Aligned_cols=33 Identities=18% Similarity=0.545 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+|||+||||||+|..+|..+++.|.+|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999975
No 239
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=6.6e-07 Score=86.61 Aligned_cols=38 Identities=32% Similarity=0.705 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
++.+|||||||+|||+||..|.+.|++|+|+|.++.++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 35799999999999999999999999999999998653
No 240
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.32 E-value=7.1e-06 Score=78.36 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=73.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... . + .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~-~--------------------~-- 185 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------------N-A--------------------P-- 185 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------------h-c--------------------C--
Confidence 57999999999999999999999999999987632100 0 0 0
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
. .....+.+.+.+. +++++++++|..++. ++.+.+.+.+|+++.+|+||.|.|....
T Consensus 186 ---------------~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 186 ---------------P----PVQRYLLQRHQQA--GVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred ---------------H----HHHHHHHHHHHHC--CCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 0 0011233334333 789999999999976 5567788889999999999999998764
No 241
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.32 E-value=3.8e-06 Score=78.63 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=82.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC------CcceeEEechh-HH--HHHHHc----CCch---------
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR------VTGFAITLWTN-AW--RALDAV----GISD--------- 63 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~------~~~~~~~~~~~-~~--~~l~~~----gl~~--------- 63 (409)
||+|||+|+|||++|+.|++. ++|+|+-|.+... ..|.+..+.+. +. ...+.+ |+-+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999998 8999999887432 12223333321 11 111111 1111
Q ss_pred -------HHHhhcccccCeEEEeccCCcccccccccccCCCCCcccc---ccCHHHHHHHHHhhC---CCCeEEeCceEE
Q 015331 64 -------SLRQQHIQLQGMVVASSVSCQPASEISFKTKGNRGGHEVR---SVKRSLLMEALEREL---PSGTIRYSSKVV 130 (409)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~r~~l~~~l~~~~---~~~~i~~~~~v~ 130 (409)
.+...+.+++. ..++ .+.+...+........ --.-+.+...|.+++ ++++++.++.+.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr-----~~~g----~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~ 158 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDR-----DEDG----RLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEAL 158 (518)
T ss_pred hHHHHHHHHHHcCCCCcC-----CCCC----ceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhh
Confidence 11122222211 1111 1111111111000000 011245667777665 578999999999
Q ss_pred EEEEeCC-eE-EEEEcC--C--CEEecCEEEEcCCCchHh
Q 015331 131 SVEESGL-FK-LVNLAD--G--AVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 131 ~v~~~~~-~~-~v~~~~--g--~~~~ad~vV~AdG~~s~v 164 (409)
++..+++ .+ -|.+.+ + .++.++.||.|+|.-+.+
T Consensus 159 ~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 159 DLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred hhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence 9877776 33 344332 2 468899999999998765
No 242
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.2e-06 Score=81.04 Aligned_cols=148 Identities=22% Similarity=0.259 Sum_probs=81.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc-cCCcceeEEechhHH-HHHHHcCCchHHHhhcccccCeEEEec
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES-LRVTGFAITLWTNAW-RALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~-~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
..+||||||||-||+-+|.+.++.|-+.+++-.+-+ ++..+|.-.+..-+. .++++.+..+-+........++.+..
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~- 105 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKV- 105 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHH-
Confidence 468999999999999999999999999998876542 333333222111111 11233322222222211111222111
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhC---CCCeEEeCceEEEE-EEeC-C----eEEEEEcCCCEEec
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALEREL---PSGTIRYSSKVVSV-EESG-L----FKLVNLADGAVFKT 151 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~---~~~~i~~~~~v~~v-~~~~-~----~~~v~~~~g~~~~a 151 (409)
++...-+..++ ....++|+.+.+.+.+.+ ++.+|+.+ .|.++ ..++ + ...|.+.+|..+.+
T Consensus 106 --------LNrs~GPAVwg-~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a 175 (679)
T KOG2311|consen 106 --------LNRSKGPAVWG-LRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYA 175 (679)
T ss_pred --------hhccCCCcccC-hHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCcEecc
Confidence 11111111111 122577777777777665 34566665 44443 2222 2 23477889999999
Q ss_pred CEEEEcCCCc
Q 015331 152 KVLIGCDGVN 161 (409)
Q Consensus 152 d~vV~AdG~~ 161 (409)
+.||..+|.+
T Consensus 176 ~~VilTTGTF 185 (679)
T KOG2311|consen 176 ESVILTTGTF 185 (679)
T ss_pred ceEEEeeccc
Confidence 9999999975
No 243
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.31 E-value=2.8e-06 Score=76.55 Aligned_cols=39 Identities=26% Similarity=0.549 Sum_probs=35.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV 41 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~ 41 (409)
.++||+|||+||.|-.+|+..++.|++...+|++...+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGG 76 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGG 76 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCc
Confidence 368999999999999999999999999999999886543
No 244
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.30 E-value=3e-06 Score=81.64 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++.+|||||||.||+.+|..|.+.+.+|+|||+++.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 356999999999999999999877889999998764
No 245
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.30 E-value=6.4e-06 Score=78.15 Aligned_cols=107 Identities=15% Similarity=0.207 Sum_probs=66.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
.+|||||||+||+.+|..|++. ..+|+||++++........ +...+ ..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~---------------l~~~~---------------~~ 52 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD---------------LSHVF---------------SQ 52 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc---------------CcHHH---------------hC
Confidence 4999999999999999999885 4689999988743211100 00000 00
Q ss_pred CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
+.... . .+ +... +.+.++. +++++.+++|+.++.+.. .|.+ ++.++.+|.||.|+|...
T Consensus 53 ~~~~~-------------~--~~-~~~~-~~~~~~~-gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 53 GQRAD-------------D--LT-RQSA-GEFAEQF-NLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred CCCHH-------------H--hh-cCCH-HHHHHhC-CCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence 00000 0 00 0001 1222222 688999999999987654 3443 566799999999999865
No 246
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.30 E-value=7.2e-06 Score=86.12 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999999874
No 247
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.28 E-value=9.3e-06 Score=71.59 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
.|||||+|+|||+++..+-..|-.|+++|+.....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~G 45 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIG 45 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcC
Confidence 69999999999999999998877799999987653
No 248
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.28 E-value=5.6e-06 Score=85.70 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=71.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeE
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMV 76 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (409)
|+ +.+|||||||+||+.+|..|.++ +++|+||++.+.+...... +...+
T Consensus 1 m~-~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~---------------L~~~~----------- 53 (847)
T PRK14989 1 MS-KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVH---------------LSSYF----------- 53 (847)
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCc---------------chHhH-----------
Confidence 54 45999999999999999999764 5799999988864322111 10000
Q ss_pred EEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEE
Q 015331 77 VASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIG 156 (409)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~ 156 (409)
.+.....+ .+.. .+.+.+ .+++++.+++|..++.+. ..|.+.+|.++.+|.||.
T Consensus 54 -----~~~~~~~l--------------~~~~---~~~~~~--~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVI 107 (847)
T PRK14989 54 -----SHHTAEEL--------------SLVR---EGFYEK--HGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIM 107 (847)
T ss_pred -----cCCCHHHc--------------cCCC---HHHHHh--CCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEE
Confidence 00000000 0111 122222 278999999999987754 356677888899999999
Q ss_pred cCCCchH
Q 015331 157 CDGVNSV 163 (409)
Q Consensus 157 AdG~~s~ 163 (409)
|+|....
T Consensus 108 ATGs~p~ 114 (847)
T PRK14989 108 ATGSYPW 114 (847)
T ss_pred CCCCCcC
Confidence 9998654
No 249
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.28 E-value=3.4e-06 Score=82.44 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+|||+||||||+|+.+|..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 250
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.27 E-value=1.5e-05 Score=76.21 Aligned_cols=100 Identities=25% Similarity=0.329 Sum_probs=77.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
+..++|||||+.|+-.|..+++.|.+|+|+|+.+.+-+. ..+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~------------------~D~ei------------------ 216 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG------------------EDPEI------------------ 216 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc------------------CCHHH------------------
Confidence 457999999999999999999999999999988753221 00110
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC--EEecCEEEEcCCCc
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA--VFKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~ 161 (409)
.+.+.+.|.+ .++.++.++++..++..++.+.+.++++. ++++|.|+.|.|+.
T Consensus 217 -----------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 217 -----------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred -----------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 1234444544 36899999999999998877888888876 68999999999987
Q ss_pred hHh
Q 015331 162 SVV 164 (409)
Q Consensus 162 s~v 164 (409)
..+
T Consensus 272 Pn~ 274 (454)
T COG1249 272 PNT 274 (454)
T ss_pred cCC
Confidence 654
No 251
>PRK06116 glutathione reductase; Validated
Probab=98.27 E-value=1.3e-05 Score=77.96 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=74.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++++.+.+... ...+
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~-------------------- 209 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------FDPD-------------------- 209 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------cCHH--------------------
Confidence 58999999999999999999999999999977632100 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCchH
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
+ +..+.+.|.+. +++++++++|.+++.+++. +.+.+.+|+++.+|.||.|.|....
T Consensus 210 --------------------~-~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 210 --------------------I-RETLVEEMEKK--GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred --------------------H-HHHHHHHHHHC--CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 0 12344444443 7899999999999876554 7788888889999999999998765
Q ss_pred h
Q 015331 164 V 164 (409)
Q Consensus 164 v 164 (409)
+
T Consensus 267 ~ 267 (450)
T PRK06116 267 T 267 (450)
T ss_pred C
Confidence 4
No 252
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.27 E-value=1.8e-06 Score=89.13 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.++|+||||||||+++|..|+++|++|+|||+.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 46999999999999999999999999999998654
No 253
>PRK07846 mycothione reductase; Reviewed
Probab=98.26 E-value=1.5e-05 Score=77.30 Aligned_cols=99 Identities=26% Similarity=0.365 Sum_probs=74.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. +..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~------------------- 208 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------LDDD------------------- 208 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHH-------------------
Confidence 358999999999999999999999999999986532100 0000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
+ +..+.+ +.+ .+++++.+++|.+++.+++.+.+.+.+++++.+|.||.|.|..+.
T Consensus 209 ---------------------~-~~~l~~-l~~--~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 209 ---------------------I-SERFTE-LAS--KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred ---------------------H-HHHHHH-HHh--cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence 0 111222 222 257899999999998877777888888889999999999998765
Q ss_pred h
Q 015331 164 V 164 (409)
Q Consensus 164 v 164 (409)
.
T Consensus 264 ~ 264 (451)
T PRK07846 264 G 264 (451)
T ss_pred c
Confidence 4
No 254
>PRK07846 mycothione reductase; Reviewed
Probab=98.24 E-value=2.3e-06 Score=83.00 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=27.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+||++||||||+|..+|.. +.|.+|+|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988865 4699999999864
No 255
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.22 E-value=7.1e-06 Score=80.72 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=35.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
..++||+|||||.|||.+|+.++++|.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 467899999999999999999999999999999987654
No 256
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.6e-06 Score=81.92 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=34.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV 41 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~ 41 (409)
++|+|+|||+|||+||+.|+.+|++|+|+|+++.++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4799999999999999999999999999999987643
No 257
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.21 E-value=3.6e-06 Score=81.71 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=28.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++|||+|||+||+|..+|. +++|.+|+|+|+..
T Consensus 1 ~~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CCcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 3699999999999988864 45799999999854
No 258
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.20 E-value=8.2e-06 Score=77.08 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=65.8
Q ss_pred cEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccC
Q 015331 6 DIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVS 82 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (409)
+|||||||+||+.+|..|+++ +.+|+|||+++....... +.. +.. +
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-----------~~~------~~~--------------g 49 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-----------LPG------MIA--------------G 49 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-----------hhH------HHh--------------e
Confidence 489999999999999999643 689999998765221110 000 000 0
Q ss_pred CcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 83 CQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
......+ ... +.+.+.+. +++++.+ +|+.++.++. +|.+.+|+++.+|+||.|+|...
T Consensus 50 ~~~~~~~--------------~~~---~~~~~~~~--gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 50 HYSLDEI--------------RID---LRRLARQA--GARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred eCCHHHh--------------ccc---HHHHHHhc--CCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 0000000 111 11222221 6777765 7888887765 56777888899999999999865
Q ss_pred H
Q 015331 163 V 163 (409)
Q Consensus 163 ~ 163 (409)
.
T Consensus 108 ~ 108 (364)
T TIGR03169 108 P 108 (364)
T ss_pred C
Confidence 4
No 259
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.19 E-value=1.6e-05 Score=77.58 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=75.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+++|||||+.|+-+|..|++.|.+|+++++.+.+... ...+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------- 219 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------EDAD-------------------- 219 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------CCHH--------------------
Confidence 47999999999999999999999999999976642110 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
.+..+.+.|.+. +++++.+++|..++.+++.+.+.+.+|+++.+|.||.|.|.....
T Consensus 220 ---------------------~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 220 ---------------------AAEVLEEVFARR--GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ---------------------HHHHHHHHHHHC--CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 012234444443 789999999999987777788888888899999999999987654
No 260
>PLN02507 glutathione reductase
Probab=98.19 E-value=2.7e-05 Score=76.43 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=75.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+-.. +..+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~-------------------- 245 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------FDDE-------------------- 245 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------cCHH--------------------
Confidence 48999999999999999999999999999976531100 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
+ +..+.+.|.+. +++++.+++|..++.+++.+.+.+.+|+++.+|.||.|.|..+..
T Consensus 246 --------------------~-~~~l~~~l~~~--GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 246 --------------------M-RAVVARNLEGR--GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 0 12244444443 789999999999988777788888888889999999999987654
No 261
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.19 E-value=4.1e-05 Score=66.94 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-------CceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLG-------IRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g-------~~V~v~E~~~~~ 39 (409)
+..+|+|||+|..||++|+.+.+.+ .+|+|++-+..+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 3579999999999999998888743 579999766654
No 262
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.18 E-value=2.8e-05 Score=75.53 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=74.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+++.+.+... +.++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~-------------------- 208 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------FDDD-------------------- 208 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------cCHH--------------------
Confidence 47999999999999999999999999999976532000 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
+ +..+.+.|.+. +++++.+++|..++..++.+.+.+.+++++.+|.||.|.|.....
T Consensus 209 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 209 --------------------M-RALLARNMEGR--GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred --------------------H-HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 0 11233444433 789999999999987767777888888889999999999987654
No 263
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.16 E-value=3.1e-05 Score=75.18 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=74.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. +.++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~d~~-------------------- 208 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------FDSM-------------------- 208 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------cCHH--------------------
Confidence 58999999999999999999999999999987642110 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCC-CEEecCEEEEcCCCch
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADG-AVFKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g-~~~~ad~vV~AdG~~s 162 (409)
+ +..+.+.|.+. +++++.++.|..++.+++ .+.+.+.++ ..+.+|.||.|.|...
T Consensus 209 --------------------~-~~~~~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 209 --------------------I-SETITEEYEKE--GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred --------------------H-HHHHHHHHHHc--CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence 0 12344445443 789999999999987644 367777777 5799999999999876
Q ss_pred Hh
Q 015331 163 VV 164 (409)
Q Consensus 163 ~v 164 (409)
..
T Consensus 266 n~ 267 (450)
T TIGR01421 266 NT 267 (450)
T ss_pred Cc
Confidence 54
No 264
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.15 E-value=2.7e-06 Score=83.68 Aligned_cols=35 Identities=40% Similarity=0.637 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999999865
No 265
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.15 E-value=4.3e-05 Score=74.05 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+... ..++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~------------------- 199 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------EEPS------------------- 199 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------CCHH-------------------
Confidence 358999999999999999999999999999987642100 0000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
+ +..+.+.|.+. +++++.+++|+.++.+++.+.+.. ++.++.+|.||.|.|....
T Consensus 200 ---------------------~-~~~~~~~l~~~--GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 200 ---------------------V-AALAKQYMEED--GITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPN 254 (438)
T ss_pred ---------------------H-HHHHHHHHHHc--CCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCC
Confidence 0 11233444433 789999999999987766666654 4668999999999998765
Q ss_pred h
Q 015331 164 V 164 (409)
Q Consensus 164 v 164 (409)
.
T Consensus 255 ~ 255 (438)
T PRK07251 255 T 255 (438)
T ss_pred c
Confidence 3
No 266
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.14 E-value=3.1e-06 Score=74.81 Aligned_cols=34 Identities=38% Similarity=0.715 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++||+|||||+||++||+.|+++|.++.|+-+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 6899999999999999999999999999998765
No 267
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.13 E-value=4.3e-05 Score=74.65 Aligned_cols=99 Identities=21% Similarity=0.310 Sum_probs=72.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. ...+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~d~~-------------------- 214 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------EDAE-------------------- 214 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------cCHH--------------------
Confidence 58999999999999999999999999999976532110 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc--CCC--EEecCEEEEcCCC
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA--DGA--VFKTKVLIGCDGV 160 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~--~g~--~~~ad~vV~AdG~ 160 (409)
+ +..+.+.|.+. +++++.+++|+.++.+++.+.+.+. +|+ ++.+|.||.|.|.
T Consensus 215 --------------------~-~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 215 --------------------V-SKEIAKQYKKL--GVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred --------------------H-HHHHHHHHHHC--CCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 0 12234444443 7899999999999877766666554 553 6999999999998
Q ss_pred chHh
Q 015331 161 NSVV 164 (409)
Q Consensus 161 ~s~v 164 (409)
.+.+
T Consensus 272 ~pn~ 275 (466)
T PRK07818 272 APRV 275 (466)
T ss_pred ccCC
Confidence 7654
No 268
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.13 E-value=4.6e-05 Score=74.27 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=71.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+... .+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~--------------------------------------~d-- 210 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG--------------------------------------ED-- 210 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc--------------------------------------cc--
Confidence 58999999999999999999999999999987632100 00
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcCCCchH
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~s~ 163 (409)
.. + +..+.+.|.+. +++++.+++|..++.++..+.+...++ .++.+|.||.|+|..+.
T Consensus 211 ---------------~e---~-~~~l~~~L~~~--GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 ---------------ED---I-AHILREKLEND--GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred ---------------HH---H-HHHHHHHHHHC--CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 00 0 12344445443 789999999999987766555554322 36899999999998776
Q ss_pred h
Q 015331 164 V 164 (409)
Q Consensus 164 v 164 (409)
+
T Consensus 270 ~ 270 (458)
T PRK06912 270 V 270 (458)
T ss_pred C
Confidence 4
No 269
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.11 E-value=3.7e-06 Score=78.65 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=32.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
+||+|||||++|+++|..|++.|.+|+|+|+++.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 69999999999999999999999999999997643
No 270
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.09 E-value=4.9e-05 Score=74.23 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=71.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+... ..++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------- 208 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------EEPE-------------------- 208 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------cCHH--------------------
Confidence 58999999999999999999999999999987542100 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcC---CCEEecCEEEEcCCCc
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLAD---GAVFKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~---g~~~~ad~vV~AdG~~ 161 (409)
+ +..+.+.|.+. +++++.+++|..++.+++.+.+.+.+ ++++.+|.||.|.|..
T Consensus 209 --------------------~-~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 209 --------------------I-SAAVEEALAEE--GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred --------------------H-HHHHHHHHHHc--CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCC
Confidence 0 12234444433 78999999999998776666565532 3579999999999987
Q ss_pred hHh
Q 015331 162 SVV 164 (409)
Q Consensus 162 s~v 164 (409)
+..
T Consensus 266 p~~ 268 (463)
T TIGR02053 266 PNT 268 (463)
T ss_pred cCC
Confidence 654
No 271
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.09 E-value=5.7e-05 Score=73.38 Aligned_cols=98 Identities=24% Similarity=0.333 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.. . +.+++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~----------------~--~d~~~------------------- 212 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR----------------H--LDEDI------------------- 212 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc----------------c--cCHHH-------------------
Confidence 5899999999999999999999999999997653110 0 00000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
+..+.+.+ + .+++++.+++|..++.+++.+.+.+.+|+++.+|.||.|.|.....
T Consensus 213 ----------------------~~~l~~~~-~--~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 213 ----------------------SDRFTEIA-K--KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred ----------------------HHHHHHHH-h--cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 01122222 2 2578999999999988777778888888889999999999987643
No 272
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.08 E-value=1.5e-05 Score=82.46 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=68.3
Q ss_pred EEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 7 IVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 7 VvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
|||||||+||+.+|..|.+. +++|+|||+.+.+...... +.. +. .+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~---------------L~~-~l--------------~g~ 50 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRIL---------------LSS-VL--------------QGE 50 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCccccc---------------ccH-HH--------------CCC
Confidence 68999999999999998775 5799999988764221110 000 00 000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
.....+ .+.. .+.+.+ .+++++.+++|+.++... ..|.+.+|.++.+|.||.|+|....
T Consensus 51 ~~~~~l--------------~~~~---~~~~~~--~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 51 ADLDDI--------------TLNS---KDWYEK--HGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred CCHHHc--------------cCCC---HHHHHH--CCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCcC
Confidence 000000 0111 112222 278999999999998764 3567788888999999999998653
No 273
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.08 E-value=5.4e-05 Score=74.08 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=70.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+... .+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~--------------------------------------~~-- 220 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT--------------------------------------ED-- 220 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc--------------------------------------CC--
Confidence 58999999999999999999999999999987642100 00
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEE--eCCeEEEEEcCCC--EEecCEEEEcCCC
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEE--SGLFKLVNLADGA--VFKTKVLIGCDGV 160 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~--~~~~~~v~~~~g~--~~~ad~vV~AdG~ 160 (409)
. .+ ...+.+.|.+. +++++.+++|..++. .+....+.+.+|+ ++.+|.||.|.|.
T Consensus 221 ---------------~---~~-~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~ 279 (472)
T PRK05976 221 ---------------A---EL-SKEVARLLKKL--GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR 279 (472)
T ss_pred ---------------H---HH-HHHHHHHHHhc--CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC
Confidence 0 01 12233444433 789999999999975 3333334455663 6899999999998
Q ss_pred chHh
Q 015331 161 NSVV 164 (409)
Q Consensus 161 ~s~v 164 (409)
...+
T Consensus 280 ~p~~ 283 (472)
T PRK05976 280 RPNT 283 (472)
T ss_pred ccCC
Confidence 7654
No 274
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.07 E-value=4.2e-06 Score=86.94 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 369999999999999999999999999999998754
No 275
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.07 E-value=6.5e-05 Score=73.54 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=72.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... ..++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~-------------------- 225 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------ADEQ-------------------- 225 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------CCHH--------------------
Confidence 58999999999999999999999999999987632110 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC----CEEecCEEEEcCCC
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGV 160 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g----~~~~ad~vV~AdG~ 160 (409)
+ +..+.+.|.+ .+++++.+++|+.++.+++.+.+.+.++ .++.+|.||.|.|.
T Consensus 226 --------------------~-~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 226 --------------------V-AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred --------------------H-HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 0 1123334433 2789999999999988777777766543 46899999999998
Q ss_pred chHh
Q 015331 161 NSVV 164 (409)
Q Consensus 161 ~s~v 164 (409)
.+..
T Consensus 283 ~p~~ 286 (475)
T PRK06327 283 VPNT 286 (475)
T ss_pred ccCC
Confidence 7654
No 276
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=8e-05 Score=72.68 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... + +
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~------------------~--------------------d- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG------------------T--------------------D- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC------------------C--------------------C-
Confidence 358999999999999999999999999999976532100 0 0
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---C--CCEEecCEEEEcC
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---D--GAVFKTKVLIGCD 158 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~--g~~~~ad~vV~Ad 158 (409)
.. + +..+.+.|.+. +++++.+++|..++.+++.+.+.+. + +.++.+|.||.|.
T Consensus 215 ----------------~~---~-~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~ 272 (466)
T PRK06115 215 ----------------TE---T-AKTLQKALTKQ--GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAI 272 (466)
T ss_pred ----------------HH---H-HHHHHHHHHhc--CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEcc
Confidence 00 0 12234444433 7899999999999876666655543 2 3479999999999
Q ss_pred CCchHh
Q 015331 159 GVNSVV 164 (409)
Q Consensus 159 G~~s~v 164 (409)
|..+.+
T Consensus 273 G~~pn~ 278 (466)
T PRK06115 273 GRRPYT 278 (466)
T ss_pred CCcccc
Confidence 987643
No 277
>PRK06370 mercuric reductase; Validated
Probab=98.05 E-value=5.9e-05 Score=73.63 Aligned_cols=99 Identities=25% Similarity=0.329 Sum_probs=71.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... ...+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~~~~-------------------- 213 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------EDED-------------------- 213 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------cCHH--------------------
Confidence 58999999999999999999999999999987642100 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEE--c-CCCEEecCEEEEcCCCc
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNL--A-DGAVFKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~--~-~g~~~~ad~vV~AdG~~ 161 (409)
+ +..+.+.|.+. +++++++++|..++.+++...+.+ . ++.++.+|.||.|.|..
T Consensus 214 --------------------~-~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 214 --------------------V-AAAVREILERE--GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 0 12233444432 789999999999988766555544 2 33479999999999987
Q ss_pred hHh
Q 015331 162 SVV 164 (409)
Q Consensus 162 s~v 164 (409)
...
T Consensus 271 pn~ 273 (463)
T PRK06370 271 PNT 273 (463)
T ss_pred cCC
Confidence 654
No 278
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.02 E-value=3.6e-05 Score=71.99 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=67.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
.+.+|||||||.+|+.+|..|.++- .+|+++|+++...... .|- ++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-----------lL~------ev--------------- 49 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-----------LLY------EV--------------- 49 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-----------hhh------hh---------------
Confidence 3569999999999999999999974 8999999987522110 000 00
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV 160 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (409)
..+. ++. ....+ .+.+.+. ...++++..+ +|++|+.++.. |.++++..+.+|+||.|.|.
T Consensus 50 a~g~----l~~---------~~i~~---p~~~~~~-~~~~v~~~~~-~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs 109 (405)
T COG1252 50 ATGT----LSE---------SEIAI---PLRALLR-KSGNVQFVQG-EVTDIDRDAKK--VTLADLGEISYDYLVVALGS 109 (405)
T ss_pred hcCC----CCh---------hheec---cHHHHhc-ccCceEEEEE-EEEEEcccCCE--EEeCCCccccccEEEEecCC
Confidence 0000 000 00011 1222222 1123555544 78899887764 55556677999999999998
Q ss_pred chH
Q 015331 161 NSV 163 (409)
Q Consensus 161 ~s~ 163 (409)
...
T Consensus 110 ~~~ 112 (405)
T COG1252 110 ETN 112 (405)
T ss_pred cCC
Confidence 764
No 279
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.01 E-value=7.2e-06 Score=79.31 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCccC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHR--LGIRSLVLESSESLR 40 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~--~g~~V~v~E~~~~~~ 40 (409)
..+|+||||||||+++|..|++ .|++|+|||+.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4689999999999999999987 799999999998764
No 280
>PRK12831 putative oxidoreductase; Provisional
Probab=98.00 E-value=7.6e-06 Score=79.52 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+||+||||||||+++|+.|+++|++|+|||+.+.+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 579999999999999999999999999999987653
No 281
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.00 E-value=5e-05 Score=78.64 Aligned_cols=99 Identities=18% Similarity=0.377 Sum_probs=73.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-.. . +.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~--ld~--------------------- 182 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------Q--LDQ--------------------- 182 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------h--cCH---------------------
Confidence 47999999999999999999999999999976531100 0 000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
.....+.+.|.+. +++++.++.++.+..++....|.+.+|+++.+|+||.|.|....
T Consensus 183 --------------------~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 183 --------------------TAGRLLQRELEQK--GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred --------------------HHHHHHHHHHHHc--CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 0012233444433 78999999999987666556788899999999999999998653
No 282
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.99 E-value=4.6e-05 Score=73.66 Aligned_cols=97 Identities=22% Similarity=0.386 Sum_probs=70.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++++.+.+... .. +
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----------------------------------~~---~-- 178 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----------------------------------LF---D-- 178 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc----------------------------------cc---C--
Confidence 58999999999999999999999999999977632000 00 0
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
. .+ +..+.+.|.+. +++++++++|.+++.++. + +.+.+|+++.+|.||.|.|....
T Consensus 179 ---------------~---~~-~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 179 ---------------E---EM-NQIVEEELKKH--EINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred ---------------H---HH-HHHHHHHHHHc--CCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 0 00 12233444433 789999999999986543 3 55677888999999999998754
No 283
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=0.00013 Score=70.80 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=72.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... ...+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~~~~-------------------- 200 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------EDRD-------------------- 200 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------cCHH--------------------
Confidence 48999999999999999999999999999976532110 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
+ ...+.+.|.+. +++++.+++|.+++.+++.+.+.+.++ ++.+|.||.|.|..+..
T Consensus 201 --------------------~-~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 201 --------------------I-ADNIATILRDQ--GVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 0 11234444433 789999999999988777777776655 48999999999987754
No 284
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.4e-05 Score=71.23 Aligned_cols=109 Identities=28% Similarity=0.424 Sum_probs=72.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEE-eCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVL-ESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~-E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
..|||+||||||||.++|.+.+|+|++.-|+ ||-. | +.|+.+++..- .
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-------G--------QvldT~~IENf-------------I--- 258 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-------G--------QVLDTMGIENF-------------I--- 258 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-------C--------eeccccchhhe-------------e---
Confidence 3589999999999999999999999987665 3221 1 11222221100 0
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEe---CCeEEEEEcCCCEEecCEEEE
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEES---GLFKLVNLADGAVFKTKVLIG 156 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~---~~~~~v~~~~g~~~~ad~vV~ 156 (409)
..+ ...-.+|...|.++.. ++.+....+.+.+++. ++-..|++.+|-.++++-+|.
T Consensus 259 ------sv~-------------~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIl 319 (520)
T COG3634 259 ------SVP-------------ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVIL 319 (520)
T ss_pred ------ccc-------------cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEE
Confidence 000 1112345555555543 4666666777777663 556889999999999999999
Q ss_pred cCCCc
Q 015331 157 CDGVN 161 (409)
Q Consensus 157 AdG~~ 161 (409)
++|+.
T Consensus 320 stGAr 324 (520)
T COG3634 320 ATGAR 324 (520)
T ss_pred ecCcc
Confidence 99964
No 285
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.2e-05 Score=63.49 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=74.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
|+...+|+|||.|||+-.+|++++++.++-+|||-.-.-. .+.|. +....
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-i~pGG---------------------------QLtTT-- 54 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-IAPGG---------------------------QLTTT-- 54 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-cCCCc---------------------------eeeee--
Confidence 3455699999999999999999999999999999432100 00000 00100
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcC
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCD 158 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (409)
.+ .-+|+..+. -+.-.+|.+.+++... +.++ +...|.+++.+..-+++.++.+ .+.||.||.|+
T Consensus 55 T~-----veNfPGFPd-------gi~G~~l~d~mrkqs~r~Gt~i-~tEtVskv~~sskpF~l~td~~-~v~~~avI~at 120 (322)
T KOG0404|consen 55 TD-----VENFPGFPD-------GITGPELMDKMRKQSERFGTEI-ITETVSKVDLSSKPFKLWTDAR-PVTADAVILAT 120 (322)
T ss_pred ec-----cccCCCCCc-------ccccHHHHHHHHHHHHhhccee-eeeehhhccccCCCeEEEecCC-ceeeeeEEEec
Confidence 00 011221111 3555677788877653 2333 3446777777777777776544 59999999999
Q ss_pred CCch
Q 015331 159 GVNS 162 (409)
Q Consensus 159 G~~s 162 (409)
|+..
T Consensus 121 GAsA 124 (322)
T KOG0404|consen 121 GASA 124 (322)
T ss_pred ccce
Confidence 9764
No 286
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=0.00012 Score=71.61 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=71.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. +.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------~d~--------------------- 215 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------ADK--------------------- 215 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------CCH---------------------
Confidence 58999999999999999999999999999987642100 000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC----CEEecCEEEEcCCC
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG----AVFKTKVLIGCDGV 160 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g----~~~~ad~vV~AdG~ 160 (409)
.+ +..+.+.|.+. ++++.+++|..++.+++.+.+.+.++ .++.+|.||.|.|.
T Consensus 216 -------------------~~-~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 216 -------------------DI-VKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred -------------------HH-HHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 00 11233333332 67889999999987777777766542 36999999999998
Q ss_pred chHh
Q 015331 161 NSVV 164 (409)
Q Consensus 161 ~s~v 164 (409)
.+.+
T Consensus 273 ~pn~ 276 (471)
T PRK06467 273 VPNG 276 (471)
T ss_pred cccC
Confidence 8765
No 287
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.96 E-value=0.00013 Score=71.41 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRL---GIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~---g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
.+|+|||||+.|+-+|..++.. |.+|+|+|+.+.+.+. +..+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~------------------~d~~----------------- 232 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG------------------FDST----------------- 232 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc------------------cCHH-----------------
Confidence 5799999999999999877654 9999999977642110 0000
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCC
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGV 160 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~ 160 (409)
+ +..+.+.|.+. +++++.++.|..++.+++. ..+.+.+++++.+|.||.|.|.
T Consensus 233 -----------------------~-~~~l~~~L~~~--GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 233 -----------------------L-RKELTKQLRAN--GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred -----------------------H-HHHHHHHHHHc--CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 0 12344445443 7899999999999865443 5677777888999999999998
Q ss_pred chHh
Q 015331 161 NSVV 164 (409)
Q Consensus 161 ~s~v 164 (409)
....
T Consensus 287 ~Pn~ 290 (486)
T TIGR01423 287 VPRT 290 (486)
T ss_pred CcCc
Confidence 7654
No 288
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.95 E-value=0.00044 Score=64.45 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=49.1
Q ss_pred ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEcCCCEEecCEEEEcCCCchHh
Q 015331 104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
.++-..+...|.+.+. +++++.+++|++++.+++.+. |.+.+| +++||.||.|+|.++.-
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 5677888888887653 689999999999998877654 666666 79999999999998853
No 289
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.95 E-value=1.5e-05 Score=72.75 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=92.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCccCCcceeEEechhHH--HHHHHcCCchHHHhhcccccCeEE
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSESLRVTGFAITLWTNAW--RALDAVGISDSLRQQHIQLQGMVV 77 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~~~~~~~~~~~~~~~~--~~l~~~gl~~~~~~~~~~~~~~~~ 77 (409)
|++.+|++.||-||+-|++|..|..++ .++..+||.+.++.... ..+....+ .+++.+ -....|.....+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-mllegstlQv~FlkDL------VTl~~PTs~ySF 74 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-MLLEGSTLQVPFLKDL------VTLVDPTSPYSF 74 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-cccCCccccccchhhh------ccccCCCCchHH
Confidence 567899999999999999999999875 78999999998765432 11111111 112211 111112111111
Q ss_pred Ee--ccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCC-CeEEeCceEEEEEEeC--CeEE--EEEcCCCEEe
Q 015331 78 AS--SVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPS-GTIRYSSKVVSVEESG--LFKL--VNLADGAVFK 150 (409)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~-~~i~~~~~v~~v~~~~--~~~~--v~~~~g~~~~ 150 (409)
.+ ...++....+ .+....+.|.++.+++.-.+.. -.++|+++|++|...+ .... +.+.++.+++
T Consensus 75 LNYL~~h~RLy~Fl---------~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ 145 (436)
T COG3486 75 LNYLHEHGRLYEFL---------NYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYR 145 (436)
T ss_pred HHHHHHcchHhhhh---------hhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEE
Confidence 11 1111111111 2234478999998888765543 4789999999874332 2233 5667777999
Q ss_pred cCEEEEcCCCchHh
Q 015331 151 TKVLIGCDGVNSVV 164 (409)
Q Consensus 151 ad~vV~AdG~~s~v 164 (409)
|+-||++.|....+
T Consensus 146 ar~lVlg~G~~P~I 159 (436)
T COG3486 146 ARNLVLGVGTQPYI 159 (436)
T ss_pred eeeEEEccCCCcCC
Confidence 99999999987755
No 290
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.95 E-value=0.00014 Score=71.57 Aligned_cols=98 Identities=18% Similarity=0.162 Sum_probs=73.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++... ... +..+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-l~~------------------~d~~-------------------- 223 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP-LRG------------------FDRQ-------------------- 223 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc-ccc------------------CCHH--------------------
Confidence 4899999999999999999999999999985321 000 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
+ ...+.+.|.+. +++++.++.+..++..++.+.+.+.+|+++.+|.||.|.|..+.+
T Consensus 224 --------------------~-~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 224 --------------------C-SEKVVEYMKEQ--GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred --------------------H-HHHHHHHHHHc--CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 0 12234444433 789999999999987666677888888889999999999987754
No 291
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.94 E-value=0.00011 Score=71.09 Aligned_cols=94 Identities=16% Similarity=0.301 Sum_probs=69.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+... +.++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------~d~~-------------------- 190 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------MDAD-------------------- 190 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------cCHH--------------------
Confidence 58999999999999999999999999999987632100 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
+ ...+.+.|.+. +++++.+++|.+++. . .|++.+|+++.+|.||.|.|....
T Consensus 191 --------------------~-~~~l~~~l~~~--gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 191 --------------------M-NQPILDELDKR--EIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred --------------------H-HHHHHHHHHhc--CCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcC
Confidence 0 12344444443 789999999999863 2 466677888999999999998654
No 292
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.93 E-value=0.0013 Score=65.18 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=51.1
Q ss_pred ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeE-EEEEc---CC--CEEecCEEEEcCCCchH-hHhHhCCCC
Q 015331 104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFK-LVNLA---DG--AVFKTKVLIGCDGVNSV-VAKWLGFKK 172 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~-~v~~~---~g--~~~~ad~vV~AdG~~s~-vr~~lg~~~ 172 (409)
.++...+...+.+.+. |+++..+++|++++.+++.+ .|++. +| .+++|+.||+|+|.++. +.+.+|...
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~ 201 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDI 201 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCC
Confidence 5777777777766553 78999999999999877754 34442 34 26899999999999985 455666543
No 293
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=1.5e-05 Score=70.39 Aligned_cols=36 Identities=33% Similarity=0.543 Sum_probs=34.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
+|++|||+|++|+.+|..|++.|.+|+|+||++.++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 799999999999999999999999999999998764
No 294
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.91 E-value=1.4e-05 Score=74.42 Aligned_cols=36 Identities=28% Similarity=0.700 Sum_probs=33.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
.+++|||||+||+.+|+.|++.|++|.++|+.+.++
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 589999999999999999999999999999999764
No 295
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.91 E-value=1.2e-05 Score=82.45 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..+|+||||||||+++|+.|++.|++|+|||+.+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4699999999999999999999999999999853
No 296
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.90 E-value=1.6e-05 Score=75.98 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCccC
Q 015331 4 DEDIVIVGAGIAGLTTSLAL-HRLGIRSLVLESSESLR 40 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L-~~~g~~V~v~E~~~~~~ 40 (409)
..+|+||||||||+.+|..| ++.|++|+|||+.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 46899999999999999976 46799999999999764
No 297
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.90 E-value=0.00016 Score=75.21 Aligned_cols=106 Identities=22% Similarity=0.329 Sum_probs=75.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+-.. . +.+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------~--ld~~-------------------- 188 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------Q--LDQM-------------------- 188 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------h--cCHH--------------------
Confidence 47999999999999999999999999999976531000 0 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC--CeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG--LFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~--~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
. ...+.+.|.+. +++++.++.+..+..++ ....+.+.+|+++.+|+||.|.|...
T Consensus 189 --------------------~-~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 189 --------------------G-GEQLRRKIESM--GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred --------------------H-HHHHHHHHHHC--CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 0 12234444433 78999999999997643 34567888999999999999999876
Q ss_pred Hh--HhHhCC
Q 015331 163 VV--AKWLGF 170 (409)
Q Consensus 163 ~v--r~~lg~ 170 (409)
.. .+..|+
T Consensus 246 n~~L~~~~Gl 255 (847)
T PRK14989 246 QDKLATQCGL 255 (847)
T ss_pred CchHHhhcCc
Confidence 53 344443
No 298
>PRK14694 putative mercuric reductase; Provisional
Probab=97.89 E-value=0.00016 Score=70.72 Aligned_cols=97 Identities=23% Similarity=0.326 Sum_probs=71.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+|+++...... ...+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~~~~-------------------- 219 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ-------------------EDPA-------------------- 219 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC-------------------CCHH--------------------
Confidence 5899999999999999999999999999985321000 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
+ ...+.+.|.+. +++++.+++|..++.+++.+.+.+.++ ++.+|.||.|.|..+..
T Consensus 220 --------------------~-~~~l~~~l~~~--GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 220 --------------------V-GEAIEAAFRRE--GIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred --------------------H-HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 0 12244444443 789999999999987777666766554 69999999999987754
No 299
>PRK02106 choline dehydrogenase; Validated
Probab=97.88 E-value=1.4e-05 Score=79.78 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHH-cCCceEEEeCCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHR-LGIRSLVLESSE 37 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~-~g~~V~v~E~~~ 37 (409)
|+..+|+||||||++|+.+|..|++ .|++|+|+|+.+
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4567899999999999999999999 899999999985
No 300
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.87 E-value=2.2e-05 Score=72.01 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=44.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCce--EEEeCCCccCC-----c-ceeEE-------------echhHHHHHHHcCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRS--LVLESSESLRV-----T-GFAIT-------------LWTNAWRALDAVGIS 62 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V--~v~E~~~~~~~-----~-~~~~~-------------~~~~~~~~l~~~gl~ 62 (409)
.++|+|+|||++||++|++|++++-+| +|+|+++..+. . ..++- .....+..+.++|+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~ 90 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE 90 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence 479999999999999999999998765 55999885321 1 11111 112466778888987
Q ss_pred hHHHh
Q 015331 63 DSLRQ 67 (409)
Q Consensus 63 ~~~~~ 67 (409)
+++..
T Consensus 91 ~e~~~ 95 (491)
T KOG1276|consen 91 DELQP 95 (491)
T ss_pred ceeee
Confidence 66543
No 301
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.86 E-value=1.9e-05 Score=76.63 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 479999999999999999999999999999987654
No 302
>PTZ00058 glutathione reductase; Provisional
Probab=97.86 E-value=0.0003 Score=69.77 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+... +.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~d~~------------------- 279 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------FDET------------------- 279 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------CCHH-------------------
Confidence 458999999999999999999999999999976531100 0000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCC-CEEecCEEEEcCCCc
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADG-AVFKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g-~~~~ad~vV~AdG~~ 161 (409)
+ ...+.+.|.+. +++++.++.|..++.+++ .+.+.+.++ +++.+|.||.|.|..
T Consensus 280 ---------------------i-~~~l~~~L~~~--GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 280 ---------------------I-INELENDMKKN--NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred ---------------------H-HHHHHHHHHHC--CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCC
Confidence 0 12244444443 789999999999986543 455555444 479999999999976
Q ss_pred hHh
Q 015331 162 SVV 164 (409)
Q Consensus 162 s~v 164 (409)
..+
T Consensus 336 Pn~ 338 (561)
T PTZ00058 336 PNT 338 (561)
T ss_pred CCc
Confidence 543
No 303
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.86 E-value=0.00023 Score=69.69 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=71.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+++|||||+.|+-+|..|++.|.+|+|+++. .+.+ .+.+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~------------------~~d~~~------------------- 222 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR------------------GFDQDC------------------- 222 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cccc------------------ccCHHH-------------------
Confidence 47999999999999999999999999999853 1100 000000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCC---CEEecCEEEEcCCCc
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADG---AVFKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~ 161 (409)
+..+.+.|.+. +++++.++.+..++..++.+.|++.++ .++.+|.||.|.|..
T Consensus 223 ----------------------~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 223 ----------------------ANKVGEHMEEH--GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred ----------------------HHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence 11234445433 789999999999987766666776665 379999999999986
Q ss_pred hHh
Q 015331 162 SVV 164 (409)
Q Consensus 162 s~v 164 (409)
..+
T Consensus 279 pn~ 281 (484)
T TIGR01438 279 ACT 281 (484)
T ss_pred cCC
Confidence 654
No 304
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.86 E-value=1.3e-05 Score=73.30 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~ 38 (409)
||+||||+|++|+.+|..|++.| .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999874
No 305
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.85 E-value=1.8e-05 Score=80.40 Aligned_cols=36 Identities=33% Similarity=0.548 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 469999999999999999999999999999998764
No 306
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.85 E-value=1.8e-05 Score=83.63 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||||||++|..|+++|++|+|||+.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 469999999999999999999999999999988754
No 307
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.84 E-value=0.00014 Score=70.71 Aligned_cols=98 Identities=21% Similarity=0.301 Sum_probs=68.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||++|+-+|..|++.|.+|+++++.+.+... .+ +
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------~~---~-- 190 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD----------------------------------SF---D-- 190 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch----------------------------------hc---C--
Confidence 58999999999999999999999999999876531100 00 0
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
.. + ...+.+.|.+. +++++++++|.+++.+++...+.+. +.++.+|.||.|.|..+.
T Consensus 191 ---------------~~---~-~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 ---------------KE---I-TDVMEEELREN--GVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKPN 247 (444)
T ss_pred ---------------HH---H-HHHHHHHHHHC--CCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence 00 0 11233444333 6899999999999765544445554 447999999999998653
No 308
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.84 E-value=3.1e-05 Score=75.77 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=34.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV 41 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~ 41 (409)
+||+|||+||+|+.+|+.|+++|++|+|||+......
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999987653
No 309
>PRK14727 putative mercuric reductase; Provisional
Probab=97.83 E-value=0.00021 Score=70.05 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+++.... .. +.++
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l-~~------------------~d~~-------------------- 229 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL-FR------------------EDPL-------------------- 229 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC-Cc------------------chHH--------------------
Confidence 57999999999999999999999999999864210 00 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
+ ...+.+.|.+. +++++.+++|..++.+++.+.+.+.++ ++.+|.||.|.|..+.+
T Consensus 230 --------------------~-~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 230 --------------------L-GETLTACFEKE--GIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred --------------------H-HHHHHHHHHhC--CCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 0 11233444433 789999999999987777777776665 58999999999998754
No 310
>PRK13748 putative mercuric reductase; Provisional
Probab=97.82 E-value=0.00028 Score=70.76 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=71.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||+.|+-+|..|++.|.+|+|+++...... ...++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------~d~~~------------------ 312 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR-------------------EDPAI------------------ 312 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc-------------------cCHHH------------------
Confidence 35899999999999999999999999999996421000 00000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~ 163 (409)
...+.+.|.+. +++++.++.|..++.+++.+.+.+.++ ++.+|.||.|.|....
T Consensus 313 -----------------------~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 313 -----------------------GEAVTAAFRAE--GIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPN 366 (561)
T ss_pred -----------------------HHHHHHHHHHC--CCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcC
Confidence 11234444433 789999999999987777777776665 5999999999998765
Q ss_pred h
Q 015331 164 V 164 (409)
Q Consensus 164 v 164 (409)
.
T Consensus 367 ~ 367 (561)
T PRK13748 367 T 367 (561)
T ss_pred C
Confidence 4
No 311
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.81 E-value=2.6e-05 Score=76.11 Aligned_cols=36 Identities=31% Similarity=0.566 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 469999999999999999999999999999998764
No 312
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.81 E-value=0.00019 Score=68.91 Aligned_cols=99 Identities=28% Similarity=0.317 Sum_probs=74.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+++|||+|+.|+.+|..|+++|++|+++|+.+.+...... .
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-----------------~--------------------- 178 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-----------------P--------------------- 178 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh-----------------H---------------------
Confidence 58999999999999999999999999999988754321000 0
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE---EEEcCCCEEecCEEEEcCCCc
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL---VNLADGAVFKTKVLIGCDGVN 161 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~---v~~~~g~~~~ad~vV~AdG~~ 161 (409)
--...+.+.|.+. +++++.++.+..++...+... +...++..+.+|+++.+.|..
T Consensus 179 --------------------~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 179 --------------------EVAEELAELLEKY--GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred --------------------HHHHHHHHHHHHC--CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 0012234444443 588999999999998776544 577788889999999999977
Q ss_pred hH
Q 015331 162 SV 163 (409)
Q Consensus 162 s~ 163 (409)
..
T Consensus 237 p~ 238 (415)
T COG0446 237 PN 238 (415)
T ss_pred cc
Confidence 63
No 313
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.80 E-value=2.7e-05 Score=74.11 Aligned_cols=34 Identities=32% Similarity=0.613 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++||+|||+|++|+++|+.|+++|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999874
No 314
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.77 E-value=3.1e-05 Score=75.46 Aligned_cols=36 Identities=31% Similarity=0.549 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.++|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 469999999999999999999999999999988754
No 315
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=0.00043 Score=67.59 Aligned_cols=99 Identities=24% Similarity=0.334 Sum_probs=69.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... +..+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~------------------- 211 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------EDPE------------------- 211 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------hhHH-------------------
Confidence 358999999999999999999999999999987632100 0000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcCC--CEEecCEEEEcCCC
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLADG--AVFKTKVLIGCDGV 160 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~g--~~~~ad~vV~AdG~ 160 (409)
+ ...+.+.|.+. +++++++++.+++.+++ .++++..++ .++.+|.||.|.|.
T Consensus 212 ---------------------~-~~~~~~~l~~~---I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 212 ---------------------V-SKQAQKILSKE---FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred ---------------------H-HHHHHHHHhhc---cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 0 11233333332 78999999999987654 455544334 46999999999998
Q ss_pred chHh
Q 015331 161 NSVV 164 (409)
Q Consensus 161 ~s~v 164 (409)
...+
T Consensus 267 ~p~~ 270 (460)
T PRK06292 267 RPNT 270 (460)
T ss_pred ccCC
Confidence 7654
No 316
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.75 E-value=3.6e-05 Score=72.48 Aligned_cols=33 Identities=30% Similarity=0.674 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 599999999999999999999999999999875
No 317
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.71 E-value=4.7e-05 Score=77.24 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 368999999999999999999999999999998764
No 318
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.69 E-value=5.1e-05 Score=73.94 Aligned_cols=36 Identities=28% Similarity=0.572 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+||||||+|+++|..|+++|++|+|+|+.+.+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 468999999999999999999999999999998764
No 319
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.69 E-value=0.00053 Score=66.10 Aligned_cols=92 Identities=26% Similarity=0.334 Sum_probs=65.8
Q ss_pred cEEEECCCHHHHHHHHHHHH--------------cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhccc
Q 015331 6 DIVIVGAGIAGLTTSLALHR--------------LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQ 71 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~--------------~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 71 (409)
+|+|||||++|+-+|..|+. .+.+|+|+|+.+.+-.. +
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~------------------~---------- 226 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS------------------F---------- 226 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc------------------C----------
Confidence 79999999999999999975 36788888866531100 0
Q ss_pred ccCeEEEeccCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEec
Q 015331 72 LQGMVVASSVSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKT 151 (409)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~a 151 (409)
+ . .+ +..+.+.|.+. +++++.+++|.++..+ .|.+++|+++.+
T Consensus 227 ----------~-----------------~---~~-~~~~~~~L~~~--gV~v~~~~~v~~v~~~----~v~~~~g~~i~~ 269 (424)
T PTZ00318 227 ----------D-----------------Q---AL-RKYGQRRLRRL--GVDIRTKTAVKEVLDK----EVVLKDGEVIPT 269 (424)
T ss_pred ----------C-----------------H---HH-HHHHHHHHHHC--CCEEEeCCeEEEEeCC----EEEECCCCEEEc
Confidence 0 0 01 23345555443 7999999999988643 366788999999
Q ss_pred CEEEEcCCCch
Q 015331 152 KVLIGCDGVNS 162 (409)
Q Consensus 152 d~vV~AdG~~s 162 (409)
|++|.|.|...
T Consensus 270 d~vi~~~G~~~ 280 (424)
T PTZ00318 270 GLVVWSTGVGP 280 (424)
T ss_pred cEEEEccCCCC
Confidence 99999999644
No 320
>PLN02546 glutathione reductase
Probab=97.66 E-value=0.00067 Score=67.33 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=70.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... +.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------~d~-------------------- 293 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------FDE-------------------- 293 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------cCH--------------------
Confidence 358999999999999999999999999999976531100 000
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEe-CCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEES-GLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
--+..+.+.|.+. +++++.++.+..++.. ++.+.+.+.++....+|.||.|.|...
T Consensus 294 ---------------------~~~~~l~~~L~~~--GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 294 ---------------------EVRDFVAEQMSLR--GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred ---------------------HHHHHHHHHHHHC--CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecccc
Confidence 0012233444433 7899999999999764 344566666555455899999999887
Q ss_pred Hh
Q 015331 163 VV 164 (409)
Q Consensus 163 ~v 164 (409)
..
T Consensus 351 nt 352 (558)
T PLN02546 351 NT 352 (558)
T ss_pred CC
Confidence 65
No 321
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.65 E-value=7.5e-05 Score=70.12 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=33.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
...+|+|||||++|+.+|..|++.|++|+|+|+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3469999999999999999999999999999988754
No 322
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.64 E-value=6.3e-05 Score=76.22 Aligned_cols=36 Identities=31% Similarity=0.536 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 468999999999999999999999999999998864
No 323
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.62 E-value=0.00081 Score=61.53 Aligned_cols=92 Identities=17% Similarity=0.337 Sum_probs=64.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||+|++|+-+|..|++.+.+|+++++.+....
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------------------------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------------------------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc-------------------------------------------
Confidence 5899999999999999999999999999997542100
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc---CC--CEEecCEEEEcCC
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA---DG--AVFKTKVLIGCDG 159 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~---~g--~~~~ad~vV~AdG 159 (409)
...+.+.|.+ ..++++++++++.+++.++....+.+. ++ .++.+|.||.|.|
T Consensus 179 ----------------------~~~~~~~l~~-~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 179 ----------------------EKILLDRLRK-NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred ----------------------CHHHHHHHHh-CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence 0012233332 236789999999998865533334332 23 4789999999999
Q ss_pred Cch
Q 015331 160 VNS 162 (409)
Q Consensus 160 ~~s 162 (409)
...
T Consensus 236 ~~~ 238 (300)
T TIGR01292 236 HEP 238 (300)
T ss_pred CCC
Confidence 543
No 324
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.59 E-value=0.00068 Score=67.05 Aligned_cols=92 Identities=21% Similarity=0.333 Sum_probs=65.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------------------------------------------
Confidence 5899999999999999999999999999986542100
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE-EEEcC---C--CEEecCEEEEcC
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL-VNLAD---G--AVFKTKVLIGCD 158 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~-v~~~~---g--~~~~ad~vV~Ad 158 (409)
...+.+.|.+ ..++++++++.+..++.+++.+. |++.+ + +++.+|.||.|.
T Consensus 390 ----------------------~~~l~~~l~~-~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~ 446 (515)
T TIGR03140 390 ----------------------DKVLQDKLKS-LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQI 446 (515)
T ss_pred ----------------------hHHHHHHHhc-CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEe
Confidence 0012223322 23789999999999987655543 55543 2 368999999999
Q ss_pred CCch
Q 015331 159 GVNS 162 (409)
Q Consensus 159 G~~s 162 (409)
|...
T Consensus 447 G~~P 450 (515)
T TIGR03140 447 GLVP 450 (515)
T ss_pred CCcC
Confidence 9654
No 325
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.58 E-value=0.00097 Score=67.24 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=68.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... +..+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------~d~e-------------------- 354 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------LDAD-------------------- 354 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------CCHH--------------------
Confidence 47999999999999999999999999999987642110 0000
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCe--EEEEEcC-------C--------C
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLF--KLVNLAD-------G--------A 147 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~--~~v~~~~-------g--------~ 147 (409)
+ ...+.+.+.+ -.+++++.++.|..++..++. +.+.+.+ + +
T Consensus 355 --------------------i-s~~l~~~ll~-~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 412 (659)
T PTZ00153 355 --------------------V-AKYFERVFLK-SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIK 412 (659)
T ss_pred --------------------H-HHHHHHHHhh-cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccce
Confidence 0 1112232222 126899999999999876533 5554431 1 2
Q ss_pred EEecCEEEEcCCCchHh
Q 015331 148 VFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 148 ~~~ad~vV~AdG~~s~v 164 (409)
++.+|.||.|.|....+
T Consensus 413 ~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 413 ETYVDSCLVATGRKPNT 429 (659)
T ss_pred EEEcCEEEEEECcccCC
Confidence 69999999999987654
No 326
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.57 E-value=0.00049 Score=64.52 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCC-EEecCEEEEcCCCch-HhHhHh
Q 015331 110 LMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGA-VFKTKVLIGCDGVNS-VVAKWL 168 (409)
Q Consensus 110 l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~s-~vr~~l 168 (409)
..+.|.+. +++++.++.|++++.++ |++++|. .+.++.+|=|.|... ++-+.+
T Consensus 215 a~~~L~~~--GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 215 AERALEKL--GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHC--CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 44455544 89999999999999875 7777777 499999999999854 444443
No 327
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.54 E-value=7.9e-05 Score=71.46 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 58999999999999999999999999999998865
No 328
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.52 E-value=3.1e-05 Score=64.16 Aligned_cols=37 Identities=35% Similarity=0.546 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCccCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESLRV 41 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~~~ 41 (409)
.||+|||+|-+||++||..+++ ..+|.|||.+-.|+.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 5999999999999999999864 689999998876643
No 329
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.52 E-value=8.3e-05 Score=73.59 Aligned_cols=37 Identities=41% Similarity=0.558 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|..++|+||||+|.+|..+|..|+..|.+|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4568999999999999999999999999999999984
No 330
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00013 Score=64.69 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
...|-|||||+||.-+|+.++++|++|.++|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 45799999999999999999999999999997763
No 331
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.52 E-value=0.00013 Score=73.08 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=33.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
.+|+||||||+||++|+.|++.|++|+|+|+.+.+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999987643
No 332
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.50 E-value=0.00013 Score=71.41 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=32.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
.+|+||||||+|+++|..|+++|++|+|||+.+.+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 69999999999999999999999999999988754
No 333
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.47 E-value=0.00019 Score=63.86 Aligned_cols=36 Identities=36% Similarity=0.660 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..||+|||+|+|||.+|..|+.+|.+|+|+|+..+.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 689999999999999999999999999999987753
No 334
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.46 E-value=0.0004 Score=64.55 Aligned_cols=131 Identities=16% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCccCCcce----eEEechhHHHHHHHcCCchHHHhhcccccCeEE
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSESLRVTGF----AITLWTNAWRALDAVGISDSLRQQHIQLQGMVV 77 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (409)
...|+|||||.++.-++..|.+.+. +|+++=|++....... ...+.|...+.+..+ .++..........
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l--~~~~R~~~l~~~~--- 264 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL--PDEERRELLREQR--- 264 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHHHHTG---
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC--CHHHHHHHHHHhH---
Confidence 4689999999999999999999875 8999998875432211 112334333333332 2222111110000
Q ss_pred EeccCCcccccccccccCCCCCccccccCHHHH---HHHHHh-hC---CCCeEEeCceEEEEEEeCC-eEEEEEcCC---
Q 015331 78 ASSVSCQPASEISFKTKGNRGGHEVRSVKRSLL---MEALER-EL---PSGTIRYSSKVVSVEESGL-FKLVNLADG--- 146 (409)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l---~~~l~~-~~---~~~~i~~~~~v~~v~~~~~-~~~v~~~~g--- 146 (409)
..+. . .|+...+ .+.+++ ++ ....++.+++|++++..++ ++.+++.+.
T Consensus 265 ----------~~ny---------~--~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~ 323 (341)
T PF13434_consen 265 ----------HTNY---------G--GIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTG 323 (341)
T ss_dssp ----------GGTS---------S--EB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT-
T ss_pred ----------hhcC---------C--CCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCC
Confidence 0000 0 2333222 222221 11 1368889999999999884 888888762
Q ss_pred --CEEecCEEEEcCCC
Q 015331 147 --AVFKTKVLIGCDGV 160 (409)
Q Consensus 147 --~~~~ad~vV~AdG~ 160 (409)
.++.+|.||.|+|.
T Consensus 324 ~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 324 EEETLEVDAVILATGY 339 (341)
T ss_dssp -EEEEEESEEEE---E
T ss_pred CeEEEecCEEEEcCCc
Confidence 36899999999995
No 335
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00023 Score=64.53 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~ 39 (409)
...|+|||+||||..+|..|.++ +.+|.|+|+.+.|
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 45899999999999999999884 6899999999875
No 336
>PRK10262 thioredoxin reductase; Provisional
Probab=97.37 E-value=0.0015 Score=60.53 Aligned_cols=33 Identities=12% Similarity=0.390 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 589999999999999999999999999999765
No 337
>PRK13984 putative oxidoreductase; Provisional
Probab=97.35 E-value=0.00026 Score=71.59 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||+||+|+++|..|+++|++|+|||+.+.+
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999988754
No 338
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.25 E-value=0.0028 Score=62.81 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=65.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
.+|+|||||.+|+-+|..|+..+.+|+|+++.+.... .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~----------------------------------------~-- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA----------------------------------------D-- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc----------------------------------------c--
Confidence 4899999999999999999999999999986653100 0
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEE-EEEc---CCC--EEecCEEEEcC
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKL-VNLA---DGA--VFKTKVLIGCD 158 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~-v~~~---~g~--~~~ad~vV~Ad 158 (409)
..+.+.+. ...++++++++.+.+++.+++.++ +++. +++ ++.+|.|+.|.
T Consensus 390 -----------------------~~l~~~l~-~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~ 445 (517)
T PRK15317 390 -----------------------QVLQDKLR-SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQI 445 (517)
T ss_pred -----------------------HHHHHHHh-cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeE
Confidence 00112222 224789999999999987755443 4443 232 58899999999
Q ss_pred CCch
Q 015331 159 GVNS 162 (409)
Q Consensus 159 G~~s 162 (409)
|...
T Consensus 446 G~~p 449 (517)
T PRK15317 446 GLVP 449 (517)
T ss_pred CCcc
Confidence 9653
No 339
>PLN02785 Protein HOTHEAD
Probab=97.24 E-value=0.00036 Score=69.64 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+||||||.+|+.+|..|++ +.+|+|+|+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35899999999999999999999 689999999864
No 340
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.23 E-value=0.00027 Score=70.26 Aligned_cols=32 Identities=34% Similarity=0.380 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLG-IRSLVLESSE 37 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~ 37 (409)
|+||||||.+|+.+|..|++.| ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 6999999986
No 341
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.17 E-value=0.0035 Score=58.92 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~ 37 (409)
..|+|||+|+.|+-+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99998654
No 342
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.16 E-value=0.01 Score=57.06 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCeEEeCceEEEEEEeCCeEEEEE-cCCCEEecCEEEEcCCCch
Q 015331 120 SGTIRYSSKVVSVEESGLFKLVNL-ADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~~~v~~-~~g~~~~ad~vV~AdG~~s 162 (409)
+++|+++++|++|+.+++++++.. .+|+++.||.||.|.....
T Consensus 211 g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 211 GGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred CCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 679999999999999888766544 3677899999999876544
No 343
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.15 E-value=0.0027 Score=59.45 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeEEEEEcCC-CEEecCEEEEcCCCch-----------HhHhHhCCC
Q 015331 106 KRSLLMEALEREL--PSGTIRYSSKVVSVEESGLFKLVNLADG-AVFKTKVLIGCDGVNS-----------VVAKWLGFK 171 (409)
Q Consensus 106 ~r~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~s-----------~vr~~lg~~ 171 (409)
.-+.+.+.|.+.+ .+++++++++|.++ +++++.|.+.++ ..++||.||.|+|..| .+.+.+|..
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~ 161 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS 161 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc
Confidence 4466777777665 37999999999999 334577777543 4699999999999976 456777765
Q ss_pred C
Q 015331 172 K 172 (409)
Q Consensus 172 ~ 172 (409)
.
T Consensus 162 i 162 (376)
T TIGR03862 162 V 162 (376)
T ss_pred c
Confidence 4
No 344
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.10 E-value=0.0069 Score=57.17 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCch
Q 015331 110 LMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNS 162 (409)
Q Consensus 110 l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s 162 (409)
+.+.|.+. +++++.++++..++.+ .|.+.+|.++.+|.||.|.|...
T Consensus 197 ~~~~l~~~--gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 197 VLRLLARR--GIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHC--CCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCCh
Confidence 44444443 7899999999988533 46777888999999999999765
No 345
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00051 Score=70.26 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
.+|+|||.|||||++|-.|-+.|+.|+|+||.+.++
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 589999999999999999999999999999998653
No 346
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.04 E-value=0.00057 Score=60.57 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-C-CceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRL-G-IRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~-g-~~V~v~E~~~~ 38 (409)
++++|+|||||-+|+..|..+.++ | -+|.|+|....
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 468999999999999999999875 3 37999996654
No 347
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.00 E-value=0.0099 Score=57.78 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999998764
No 348
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0016 Score=56.64 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=45.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC-------CcceeEEechhHHHHHHHcCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR-------VTGFAITLWTNAWRALDAVGIS 62 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~-------~~~~~~~~~~~~~~~l~~~gl~ 62 (409)
++++|||+|..|.++|..|.+.|++|+++|+++... .....+.........|+++|+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 479999999999999999999999999999987531 2223444555667888888765
No 349
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.93 E-value=0.0059 Score=57.43 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=34.9
Q ss_pred CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV 160 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (409)
++++++++.|+.++.... +|.+.+|+++.++.+|.|+|.
T Consensus 141 gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence 689999999999987654 678889999999999999998
No 350
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.90 E-value=0.011 Score=57.80 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999999998 899998754
No 351
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.89 E-value=0.018 Score=54.91 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL----GIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~----g~~V~v~E~~~~~ 39 (409)
+.++=|||+|+|+|++|.+|-|- |-+|+|+|+.+.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 45788999999999999999884 6799999988753
No 352
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.88 E-value=0.0068 Score=55.34 Aligned_cols=99 Identities=19% Similarity=0.321 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
+.+.+|||||..||-.+..-.+.|-+|+++|-.+..... + ++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~------------------m--------------------D~ 252 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV------------------M--------------------DG 252 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc------------------c--------------------CH
Confidence 357899999999999999999999999999955432110 0 10
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCC-eEEEEEcC---C--CEEecCEEEEc
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGL-FKLVNLAD---G--AVFKTKVLIGC 157 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~-~~~v~~~~---g--~~~~ad~vV~A 157 (409)
+ + .+.+.+.|.+ ++..++.+++|+..+.+++ .+.|.+.+ + ++++||++.+|
T Consensus 253 E--------------------i-sk~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 253 E--------------------I-SKAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred H--------------------H-HHHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEE
Confidence 0 0 1234445544 3789999999999998877 56666544 2 37899999999
Q ss_pred CCCchH
Q 015331 158 DGVNSV 163 (409)
Q Consensus 158 dG~~s~ 163 (409)
.|+..-
T Consensus 310 iGRrP~ 315 (506)
T KOG1335|consen 310 IGRRPF 315 (506)
T ss_pred ccCccc
Confidence 997643
No 353
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.84 E-value=0.0077 Score=64.29 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=66.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
.+|+|||+|+.|+.+|..|++.|. .|+|+|..+... .
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~----------------~-------------------------- 355 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS----------------P-------------------------- 355 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh----------------H--------------------------
Confidence 589999999999999999999995 578998654210 0
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEc----CCCEEecCEEEEcCC
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLA----DGAVFKTKVLIGCDG 159 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~----~g~~~~ad~vV~AdG 159 (409)
.+.+.|.+. ++.++.++.|+.+..++....|++. +++++.||.|+.+.|
T Consensus 356 -------------------------~l~~~L~~~--GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G 408 (985)
T TIGR01372 356 -------------------------EARAEAREL--GIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG 408 (985)
T ss_pred -------------------------HHHHHHHHc--CCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC
Confidence 012233322 6888889888888765433233333 445799999999999
Q ss_pred CchHh--HhHhC
Q 015331 160 VNSVV--AKWLG 169 (409)
Q Consensus 160 ~~s~v--r~~lg 169 (409)
....+ .+.++
T Consensus 409 ~~Pnt~L~~~lg 420 (985)
T TIGR01372 409 WTPVVHLFSQRG 420 (985)
T ss_pred cCchhHHHHhcC
Confidence 87643 44444
No 354
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.80 E-value=0.0074 Score=56.78 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=76.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSC 83 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 83 (409)
...|+++|+|..|+-+|..|.-.+.+|+++++.+.+-.. .+ .
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~----------------------------------lf---~- 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR----------------------------------LF---G- 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh----------------------------------hh---h-
Confidence 346999999999999999999999999999977642110 00 0
Q ss_pred cccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeC--CeEEEEEcCCCEEecCEEEEcCCCc
Q 015331 84 QPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESG--LFKLVNLADGAVFKTKVLIGCDGVN 161 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~--~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
.--++.+..++.+. +++++.++.+.+++.+. ....|.+.+++++.||+||.+.|..
T Consensus 255 --------------------~~i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 255 --------------------PSIGQFYEDYYENK--GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred --------------------HHHHHHHHHHHHhc--CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 00133455555554 68999999999998765 4466899999999999999999987
Q ss_pred hHh
Q 015331 162 SVV 164 (409)
Q Consensus 162 s~v 164 (409)
+.+
T Consensus 313 p~t 315 (478)
T KOG1336|consen 313 PNT 315 (478)
T ss_pred ccc
Confidence 643
No 355
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.72 E-value=0.0034 Score=60.93 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..+|+|||+|.+|+=.|..|++.+.+|+++.|..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3589999999999999999999999999998764
No 356
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.71 E-value=0.0013 Score=61.10 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCeEEeCceEEEEEEeCCe-EEEEEcCCCEEecCEEEEcCCCchHhHhHh
Q 015331 120 SGTIRYSSKVVSVEESGLF-KLVNLADGAVFKTKVLIGCDGVNSVVAKWL 168 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~s~vr~~l 168 (409)
+.+|.++..|.+|.-++++ +.|.+.||+++.++.||-=.+.+-..-+.+
T Consensus 278 GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 278 GAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred cceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 6799999999999877665 559999999999999887666665554444
No 357
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.69 E-value=0.0022 Score=52.56 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|+|||||..|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999875
No 358
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0024 Score=57.20 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLES 35 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
-+||.+|||||-+||+||...+..|.+|.++|-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 368999999999999999999999999999984
No 359
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.60 E-value=0.0027 Score=60.44 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=31.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRV 41 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~ 41 (409)
|..++||||+|-|+.-+.+|..|++.|.+|+.+|+++.-+.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCC
Confidence 77889999999999999999999999999999999985433
No 360
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.59 E-value=0.022 Score=57.02 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 589999999999999999999999999999765
No 361
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.59 E-value=0.002 Score=54.28 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=27.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++|+|||.|..||.+|..|+++|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998764
No 362
>PRK12831 putative oxidoreductase; Provisional
Probab=96.59 E-value=0.034 Score=54.27 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..|.+.|.+|+|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999998654
No 363
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.58 E-value=0.027 Score=55.12 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESS 36 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~ 36 (409)
.+|+|||||..|+-+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 479999999999999999888886 68866644
No 364
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.53 E-value=0.013 Score=54.13 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=42.0
Q ss_pred CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc--hHhHhHhCC
Q 015331 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN--SVVAKWLGF 170 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~--s~vr~~lg~ 170 (409)
++.++.|..|.++......+.++++||.+++.|+||+|.|-. |-+.+.-|.
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgL 459 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGL 459 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccc
Confidence 789999999999888877889999999999999999999974 444444333
No 365
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.42 E-value=0.0039 Score=52.29 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||+|..|...|..++++|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998764
No 366
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.41 E-value=0.0035 Score=61.32 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCcc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRL-GIRSLVLESSESL 39 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~~~~~ 39 (409)
..||.||||||-||+.+|..|++. .++|+|+|+...+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999985 7899999998754
No 367
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.28 E-value=0.006 Score=55.67 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|++..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 56667899999999999999999999999999998764
No 368
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.28 E-value=0.0083 Score=59.24 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|||+|.+|.=.|..|++...+|.+.-|+..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 46899999999999999999999889999888764
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.21 E-value=0.0066 Score=59.64 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|||+|++|+.+|..|+++|.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999765
No 370
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.21 E-value=0.039 Score=49.94 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
+.+|..|||||-.|++.|+..+.+|.+|.|+|..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 4689999999999999999999999999999965
No 371
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.21 E-value=0.0068 Score=55.00 Aligned_cols=38 Identities=32% Similarity=0.519 Sum_probs=33.8
Q ss_pred CCCC-CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEED-EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~-~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+.+ .+|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5544 3799999999999999999999999999998875
No 372
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.0057 Score=59.71 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
+|+|||.|++|+++|..|+++|++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 373
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.06 E-value=0.09 Score=53.69 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..|.+.|. +|+|+++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999999986 599998765
No 374
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.03 E-value=0.011 Score=47.96 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|+|+|+|-.|+..|..|++.|.+|.++.|.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999765
No 375
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.98 E-value=0.01 Score=54.43 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.++|+|||+|..|...|..|++.|.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 4689999999999999999999999999999864
No 376
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.96 E-value=0.01 Score=55.10 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=34.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|++.++|.|||+|.-|...|..|++.|++|++++|++.
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 67778999999999999999999999999999998653
No 377
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.94 E-value=0.0091 Score=54.90 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 3799999999999999999999999999998864
No 378
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.91 E-value=0.012 Score=54.22 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++++|+|||+|-.|.++|..|++.|++|+++.|+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 45789999999999999999999999999998764
No 379
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.82 E-value=0.089 Score=54.77 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..|.+.|.+ |+|+++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4899999999999999999999987 99998764
No 380
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.76 E-value=0.015 Score=53.29 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||+|..|...|..++.+|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998764
No 381
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.72 E-value=0.016 Score=56.48 Aligned_cols=35 Identities=29% Similarity=0.662 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+..+|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35689999999999999999999999999999875
No 382
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.70 E-value=0.016 Score=53.36 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|.+-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 66656899999999999999999999999999997653
No 383
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.68 E-value=0.015 Score=56.88 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 358999999999999999999999999999998754
No 384
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.65 E-value=1.1 Score=44.34 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=39.6
Q ss_pred HHHHHHHHhhC--CCCeEEeCceEEEEEEeCCeE-EEEEcCC-----CEEecCEEEEcCCCch
Q 015331 108 SLLMEALEREL--PSGTIRYSSKVVSVEESGLFK-LVNLADG-----AVFKTKVLIGCDGVNS 162 (409)
Q Consensus 108 ~~l~~~l~~~~--~~~~i~~~~~v~~v~~~~~~~-~v~~~~g-----~~~~ad~vV~AdG~~s 162 (409)
..|.+.|.+.+ .+++|+++++|++|..+++.+ .|.+.++ +++.+|.||.+.....
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~ 294 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS 294 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence 45666676655 378999999999998877642 2434343 5789999998877643
No 385
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.62 E-value=0.017 Score=52.72 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=34.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|.+-.+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 66556899999999999999999999999999998764
No 386
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.62 E-value=0.03 Score=55.72 Aligned_cols=107 Identities=21% Similarity=0.330 Sum_probs=69.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEeccCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSVSCQ 84 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (409)
...+|||||.-|+-+|..|.+.|.+|+|++-.+..- ..++... .+
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------------------erQLD~~-------------ag- 190 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------------------ERQLDRT-------------AG- 190 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------------------HHhhhhH-------------HH-
Confidence 346999999999999999999999999998554210 0000000 00
Q ss_pred ccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchH-
Q 015331 85 PASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSV- 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~- 163 (409)
..|.+.|.+. +..++.++..+.+..++....++++||..+.+|+||-|+|....
T Consensus 191 -----------------------~lL~~~le~~--Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 191 -----------------------RLLRRKLEDL--GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND 245 (793)
T ss_pred -----------------------HHHHHHHHhh--cceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccccc
Confidence 0011111111 45666666666665555556789999999999999999998764
Q ss_pred -hHhHhCCC
Q 015331 164 -VAKWLGFK 171 (409)
Q Consensus 164 -vr~~lg~~ 171 (409)
+.+..|+.
T Consensus 246 ela~~aGla 254 (793)
T COG1251 246 ELAKEAGLA 254 (793)
T ss_pred HhHHhcCcC
Confidence 35555543
No 387
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.58 E-value=0.023 Score=46.40 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEe
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLE 34 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E 34 (409)
..+|+|||||..|..-|..|.+.|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4689999999999999999999999999995
No 388
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.54 E-value=0.02 Score=52.12 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998764
No 389
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.52 E-value=0.023 Score=47.03 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++.+|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35799999999999999999999999999999765
No 390
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.46 E-value=0.02 Score=52.56 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|+|||+|-.|.++|..|++.|++|++++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999854
No 391
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.44 E-value=0.02 Score=52.58 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLES 35 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
+|+|||+|..|.++|..|+++|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999997
No 392
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.42 E-value=0.085 Score=50.49 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=33.5
Q ss_pred CCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCchHh
Q 015331 120 SGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 120 ~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~s~v 164 (409)
++.++.+++|..++.... .|.+.++ .+.+|.+|.|+|.....
T Consensus 67 ~i~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 67 GIDVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred CCEEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCCcccC
Confidence 678999999999987765 3555566 78999999999987543
No 393
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.39 E-value=0.028 Score=48.16 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..+|+|||||.+|..-+..|.+.|.+|+|++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999998543
No 394
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.34 E-value=0.03 Score=51.57 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCcc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSESL 39 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~~ 39 (409)
|.+..+|+|||+|-.|..+|+.|+..|+ ++.|+|.++..
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 4456799999999999999999999996 89999987753
No 395
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.021 Score=52.00 Aligned_cols=33 Identities=21% Similarity=0.486 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|+|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999999999999998764
No 396
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.31 E-value=0.022 Score=54.54 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=33.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|. ..+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 1 m~-~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MS-FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CC-ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 54 46899999999999999999999999999998764
No 397
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.31 E-value=0.015 Score=43.81 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+...|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45689999999999999999999999999998663
No 398
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.028 Score=51.01 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|+|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 4799999999999999999999999999998764
No 399
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.18 E-value=0.025 Score=51.60 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998764
No 400
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.18 E-value=0.028 Score=52.49 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
++|+|||+|..|...|..|+++|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 47999999999999999999999999999974
No 401
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.16 E-value=0.037 Score=47.32 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES 35 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
...|+|||||-.|...|..|.+.|.+|+|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 46899999999999999999999999999974
No 402
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.15 E-value=0.031 Score=44.41 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999998 799999765
No 403
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.13 E-value=0.031 Score=51.27 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~ 38 (409)
+|.|||+|.+|+++|+.|+.+| .+|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 6999999999999999999999 47999998764
No 404
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.12 E-value=0.028 Score=51.97 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++|.|||.|.+||.+|..|++.|++|+.+|.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998864
No 405
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.10 E-value=0.037 Score=47.20 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+.+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5689999999999999999999999 699999773
No 406
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.09 E-value=0.027 Score=44.68 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++|+|+|+.+.+++..++..|++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998765
No 407
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.09 E-value=0.031 Score=54.97 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+.-.+|.|||+|.-|...|..|+++|++|+|+|+++.
T Consensus 1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 55556899999999999999999999999999998764
No 408
>PRK04148 hypothetical protein; Provisional
Probab=95.03 E-value=0.026 Score=44.25 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998774
No 409
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.96 E-value=0.039 Score=42.42 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 7 IVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 7 VvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|+|+|.|..|..++..|.+.+++|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999874
No 410
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.94 E-value=0.042 Score=50.51 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 2 EEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 2 ~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++.++|.|||+|..|.+.|..|++.|++|.+++|+..
T Consensus 2 ~~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3567899999999999999999999999999998753
No 411
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.93 E-value=0.38 Score=47.05 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.+|+|||||..|+-+|..+.+.|. +|+|+++.+.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 589999999999999999999995 7999997653
No 412
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.88 E-value=0.055 Score=43.33 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=30.1
Q ss_pred CcEEEECC-CHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331 5 EDIVIVGA-GIAGLTTSLALHRLGI--RSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGg-G~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
++|+|||+ |..|.++|+.|...++ ++.|+|....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 47999999 9999999999999875 6999998753
No 413
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.86 E-value=0.3 Score=51.64 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHc-C-CceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRL-G-IRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~-g-~~V~v~E~~~ 37 (409)
.+|+|||||.+|+-+|..+.+. | .+|+|+.+++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4899999999999999998887 5 4899999875
No 414
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.84 E-value=0.04 Score=51.89 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..+|+|||+|.+|+.+|..|+..|.+|+++|+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999865
No 415
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.83 E-value=0.05 Score=48.46 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 35689999999999999999999995 899999665
No 416
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.79 E-value=0.049 Score=49.85 Aligned_cols=34 Identities=29% Similarity=0.529 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
++|.|||+|..|+.+|+.|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 479999999999999999999887 8999998543
No 417
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.74 E-value=0.069 Score=42.43 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc-eEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIR-SLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~-V~v~E~~~ 37 (409)
..+|+|||+|-+|-+++..|+..|.+ |+|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 46899999999999999999999987 99999865
No 418
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.72 E-value=0.044 Score=50.86 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|.|||+|-.|.++|..|++.|++|.+++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999865
No 419
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.67 E-value=0.039 Score=53.81 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998764
No 420
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.65 E-value=0.38 Score=51.08 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=29.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHc-CC-ceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRL-GI-RSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~-g~-~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..+.+. |. +|+|++++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 5899999999999999998876 85 799999765
No 421
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.46 Score=43.41 Aligned_cols=36 Identities=17% Similarity=0.476 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|||||-+..--|+.|++.+.+|+++-|++..
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ 178 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF 178 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence 349999999999999999999999999999988753
No 422
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.58 E-value=0.04 Score=52.88 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998764
No 423
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.57 E-value=0.049 Score=51.69 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..|+|+|+|+.|+.+|..++..|.+|+++|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4899999999999999999999999999998753
No 424
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.54 E-value=0.43 Score=48.90 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
.+|+|||||..|+-+|..+.+.|. +|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999986 699988764
No 425
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.46 E-value=0.046 Score=49.49 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|.|||.|..|.++|..|+++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999765
No 426
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.27 E-value=0.061 Score=49.85 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|.|||+|..|...|..|++.|++|+++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999999999999999999999999865
No 427
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.23 E-value=0.088 Score=43.44 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCC
Q 015331 4 DEDIVIVGAGI-AGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 4 ~~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
..+|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999996 6999999999999999999976
No 428
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.21 E-value=0.038 Score=47.95 Aligned_cols=34 Identities=29% Similarity=0.556 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCcc
Q 015331 6 DIVIVGAGIAGLTTSLALHRL--GIRSLVLESSESL 39 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~--g~~V~v~E~~~~~ 39 (409)
+.+|||||+||.+||-.|+++ ..+|+|+-.++..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 368999999999999999986 4578888777643
No 429
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.20 E-value=0.075 Score=49.34 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 899999875
No 430
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.17 E-value=0.065 Score=44.15 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||-|..|...|..|.++|++|.++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 4899999999999999999999999999998864
No 431
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.16 E-value=0.088 Score=46.47 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+.+++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 346899999999999999999999999999997755
No 432
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.15 E-value=0.31 Score=48.87 Aligned_cols=110 Identities=23% Similarity=0.250 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEec
Q 015331 4 DEDIVIVGAGIAGLTTSLALHR---LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASS 80 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~---~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (409)
+.+++|||.|++|..+.-.+.+ .-++|++|-..+.+.... +.+++ ++..
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R--i~Ls~--------------------------vl~~ 54 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR--ILLSS--------------------------VLAG 54 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc--eeecc--------------------------ccCC
Confidence 5689999999999999999887 346899986555432210 11100 0000
Q ss_pred cCCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCC
Q 015331 81 VSCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGV 160 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (409)
. .....+ .+.+.+ + +++ .+++++.+.+|+.++.... .|.++.|.++.+|-+|.|+|.
T Consensus 55 -~-~~~edi--------------~l~~~d---w-y~~-~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS 111 (793)
T COG1251 55 -E-KTAEDI--------------SLNRND---W-YEE-NGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGS 111 (793)
T ss_pred -C-ccHHHH--------------hccchh---h-HHH-cCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCc
Confidence 0 000000 111111 1 122 1789999999999987654 577788999999999999998
Q ss_pred chHh
Q 015331 161 NSVV 164 (409)
Q Consensus 161 ~s~v 164 (409)
...+
T Consensus 112 ~pfi 115 (793)
T COG1251 112 YPFI 115 (793)
T ss_pred cccc
Confidence 7655
No 433
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.12 E-value=0.21 Score=47.57 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=47.1
Q ss_pred ccCHHHHHHHHHhhCC--CCeEEeCceEEEEEEeCCeEE-EEEcCC--CEEecCEEEEcCCCc-hH
Q 015331 104 SVKRSLLMEALERELP--SGTIRYSSKVVSVEESGLFKL-VNLADG--AVFKTKVLIGCDGVN-SV 163 (409)
Q Consensus 104 ~i~r~~l~~~l~~~~~--~~~i~~~~~v~~v~~~~~~~~-v~~~~g--~~~~ad~vV~AdG~~-s~ 163 (409)
.+.-..|.+.|.+.+. +++++.+++|.++..++++++ |.+.++ .++++|.+|.|+|.+ |.
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 4566677777777653 679999999999998888766 454555 479999999999999 74
No 434
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.03 E-value=0.096 Score=44.81 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
.+.+|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35789999999999999999999998 899999764
No 435
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.90 E-value=0.38 Score=44.83 Aligned_cols=45 Identities=24% Similarity=0.173 Sum_probs=35.0
Q ss_pred CCCeEEeCceEEEEEEeCCe-EEEEEcC-----CCEEecCEEEEcCCCchH
Q 015331 119 PSGTIRYSSKVVSVEESGLF-KLVNLAD-----GAVFKTKVLIGCDGVNSV 163 (409)
Q Consensus 119 ~~~~i~~~~~v~~v~~~~~~-~~v~~~~-----g~~~~ad~vV~AdG~~s~ 163 (409)
+.+.+.-+++|..++..+++ +.+.+.. ..+++.|.||.|+|..-.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~ 341 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRA 341 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccC
Confidence 35688889999999998866 6665533 237899999999998743
No 436
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.88 E-value=0.079 Score=51.50 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLG--IRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~ 38 (409)
++|+|||.|..|+.+|..|+++| ++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 47999999999999999999984 78999998764
No 437
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.11 Score=47.49 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCccC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESLR 40 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~~ 40 (409)
.+||+|+|-|+.=+.++..|+..|.+|+.||+++.-+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 4999999999999999999999999999999998543
No 438
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.82 E-value=0.095 Score=45.53 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=29.4
Q ss_pred cEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 6 DIVIVG-AGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 6 dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
+|.||| +|..|.++|..|++.|++|.++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 69999999999999999999998765
No 439
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.77 E-value=0.078 Score=50.28 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|..|+.+|..|+. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988885 999999998875
No 440
>PRK13984 putative oxidoreductase; Provisional
Probab=93.76 E-value=0.72 Score=46.81 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=29.2
Q ss_pred CCcEEEeccCCCCCCCCCcchhhhHhhHHHHHHHHHHHHhcC
Q 015331 286 KGNVCVAGDAFHPMTPDIGQGGCAALEDGIILARCIAEASTE 327 (409)
Q Consensus 286 ~~~v~lvGDAA~~~~P~~G~G~~~al~da~~La~~l~~~~~~ 327 (409)
.++|+.+||+++. ..+..|+.++..+|..|.+.+.+
T Consensus 568 ~~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 568 IPWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999853 24677999999999999987753
No 441
>PRK05442 malate dehydrogenase; Provisional
Probab=93.75 E-value=0.1 Score=48.14 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=32.8
Q ss_pred CCCCCcEEEECC-CHHHHHHHHHHHHcCC-------ceEEEeCCC
Q 015331 1 MEEDEDIVIVGA-GIAGLTTSLALHRLGI-------RSLVLESSE 37 (409)
Q Consensus 1 M~~~~dVvIIGg-G~aGl~~A~~L~~~g~-------~V~v~E~~~ 37 (409)
|+.+.+|+|||+ |..|.++|+.|...|+ ++.|+|..+
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence 888899999998 9999999999988764 699999764
No 442
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.75 E-value=0.11 Score=48.34 Aligned_cols=34 Identities=24% Similarity=0.537 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 5689999999999999999999999 899999864
No 443
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.73 E-value=0.066 Score=47.76 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+-+|+|||||.+|.-+|..+...|-+|+|+|.+.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 46899999999999999999999999999998753
No 444
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.72 E-value=0.11 Score=45.65 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4689999999999999999999997 788998765
No 445
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.71 E-value=0.11 Score=47.85 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.+|+|||+|..|..+|..|+..|+ +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999998654
No 446
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.68 E-value=0.081 Score=44.85 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=33.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|.+...|.|||||.-|.-.|...+..|++|.|+|++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 33456899999999999999999999999999998865
No 447
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.65 E-value=0.1 Score=48.85 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~ 38 (409)
.+|+|||+|-.|..+|..|++.| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 48999999999999999999998 89999999853
No 448
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.62 E-value=0.098 Score=51.38 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+-.+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998875
No 449
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.61 E-value=0.12 Score=45.70 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5799999999999999999999998 799999664
No 450
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.61 E-value=0.12 Score=48.96 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
...|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 35899999999999999999999999999998764
No 451
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.58 E-value=0.088 Score=50.32 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
..+|+|+|-|.+|+++|..|.+.|.+|+++|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 568999999999999999999999999999977765
No 452
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.56 E-value=0.14 Score=47.13 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
...+|+|||+|-.|.++|+.|+..|+ ++.|+|.+..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 34699999999999999999999987 7999998653
No 453
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.51 E-value=0.092 Score=48.08 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++|+|+|+|-.|...|+.|+++|.+|+++-|.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 379999999999999999999998888877665
No 454
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.46 E-value=0.12 Score=47.08 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|||.|.+|..++..|++.|.+|+++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46899999999999999999999999999998853
No 455
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.38 E-value=0.052 Score=42.37 Aligned_cols=32 Identities=34% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLES 35 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~ 35 (409)
..+|.|||+|-+|.++|..|.++|+.|.-+..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 47999999999999999999999999887754
No 456
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.34 E-value=0.13 Score=47.32 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLG--IRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g--~~V~v~E~~~~ 38 (409)
+|+|||+|-+|.++|+.|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999999 47999998764
No 457
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.32 E-value=0.15 Score=42.45 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999999 599999765
No 458
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.24 E-value=0.15 Score=49.50 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
...|+|+|.|.+|+++|..|+++|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35799999999999999999999999999997654
No 459
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.21 E-value=0.14 Score=41.54 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=27.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
-..++|+|-|..|-.+|..|+..|.+|+|.|.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 3579999999999999999999999999999877
No 460
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.21 E-value=0.13 Score=50.77 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998875
No 461
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.17 E-value=0.16 Score=46.86 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLG-IRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g-~~V~v~E~~~~ 38 (409)
+..+|+|||+|-.|.++|+.|+..| .++.|+|.+..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 4679999999999999999999998 58999998764
No 462
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.14 E-value=0.17 Score=43.61 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5689999999999999999999998 599999764
No 463
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.13 E-value=0.16 Score=44.44 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5699999999999999999999998 788998664
No 464
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.12 E-value=0.13 Score=50.10 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
..+|+|+|+|++|++++..+...|.+|.++|.++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998764
No 465
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.11 E-value=0.14 Score=49.90 Aligned_cols=37 Identities=38% Similarity=0.515 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
|..+--|+|||.|-+|.++|..|.+.|++|++.|...
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 6667789999999999999999999999999999765
No 466
>PRK08328 hypothetical protein; Provisional
Probab=93.10 E-value=0.16 Score=44.42 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 688998664
No 467
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.08 E-value=0.4 Score=44.69 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=80.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCccCCcceeEEechhHHHHHHHcCCchHHHhhcccccCeEEEecc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHR--LGIRSLVLESSESLRVTGFAITLWTNAWRALDAVGISDSLRQQHIQLQGMVVASSV 81 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~--~g~~V~v~E~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (409)
+...+|||||-+..+++....- .+.+|.+|-..+......- |-+ ++ ||-. ..-...+...+..++
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRP-----PLS----KE--LW~~--~dpn~~k~lrfkqws 244 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRP-----PLS----KE--LWWY--GDPNSAKKLRFKQWS 244 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCC-----Ccc----hh--ceec--CCCChhhheeecccC
Confidence 3568999999988888777754 4678888865554321110 000 11 1100 011123344444443
Q ss_pred CCcccccccccccCCCCCccccccCHHHHHHHHHhhCCCCeEEeCceEEEEEEeCCeEEEEEcCCCEEecCEEEEcCCCc
Q 015331 82 SCQPASEISFKTKGNRGGHEVRSVKRSLLMEALERELPSGTIRYSSKVVSVEESGLFKLVNLADGAVFKTKVLIGCDGVN 161 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~~i~~~~~v~~v~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (409)
+.+. .+.|. ...++++..+|.+... .++.+..+.+|+.+..++. .|.++||.+|.+|-+++|+|..
T Consensus 245 GkeR--siffe-------pd~FfvspeDLp~~~n---GGvAvl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 245 GKER--SIFFE-------PDGFFVSPEDLPKAVN---GGVAVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGVR 310 (659)
T ss_pred Cccc--eeEec-------CCcceeChhHCccccc---CceEEEeccceEEeecccC--eEEecCCcEeehhheeeecCcC
Confidence 3222 33333 2334677766654321 2568889999999988775 4677899999999999999987
Q ss_pred hHh
Q 015331 162 SVV 164 (409)
Q Consensus 162 s~v 164 (409)
..-
T Consensus 311 Pk~ 313 (659)
T KOG1346|consen 311 PKK 313 (659)
T ss_pred ccc
Confidence 643
No 468
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.06 E-value=0.13 Score=50.53 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|+|.|.+|++++..|.+.|.+|++.|..+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 489999999999999999999999999999653
No 469
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.03 E-value=0.15 Score=49.68 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
...|+|+|+|.+|.++|..|++.|.+|.+.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999765
No 470
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.02 E-value=0.16 Score=45.97 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
.+|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999998 799999874
No 471
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.00 E-value=0.18 Score=46.34 Aligned_cols=36 Identities=17% Similarity=0.485 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~~ 38 (409)
.+.+|+|||+|-.|.++|+.|+..|. ++.|+|....
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 35799999999999999999998876 6899997653
No 472
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.95 E-value=0.9 Score=42.69 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
++.+|||+|.|=+|.++...|-..-++|+|+..++
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 45789999999999999999988889999998665
No 473
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.94 E-value=0.17 Score=44.08 Aligned_cols=34 Identities=35% Similarity=0.520 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc---eEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIR---SLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~---V~v~E~~~ 37 (409)
..+|+|+|+|-+|..+|..|.+.|.+ +.|++|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 46899999999999999999999985 99999874
No 474
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.94 E-value=0.19 Score=40.33 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999665
No 475
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.92 E-value=0.15 Score=49.80 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.+|+|+|.|.+|.++|..|++.|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999765
No 476
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.86 E-value=0.2 Score=42.80 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
..|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999866
No 477
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=0.058 Score=49.79 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=36.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCcc
Q 015331 1 MEEDEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSESL 39 (409)
Q Consensus 1 M~~~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~~ 39 (409)
|.+.+||+|+|-|..=+.++..|+..|.+|+.+||++.-
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYY 39 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCC
Confidence 778899999999999999999999999999999999853
No 478
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.84 E-value=0.15 Score=46.93 Aligned_cols=33 Identities=24% Similarity=0.546 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCC
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGI--RSLVLESSE 37 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~--~V~v~E~~~ 37 (409)
.+|+|||+|..|.+.|..|++.|+ +|.++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999985 899999765
No 479
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.80 E-value=0.14 Score=47.97 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=27.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGI-RSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
.|+|+|+||.||+++..++..|. +|+++|+++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 59999999999999888888886 6777787653
No 480
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.78 E-value=0.17 Score=45.89 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..+|+|||.|..|.++|..|+..|.+|++++|+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999999999999999999999875
No 481
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.75 E-value=0.14 Score=49.91 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 799999999999999999999999999998764
No 482
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.64 E-value=0.2 Score=42.65 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
..+|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5789999999999999999999998 599999664
No 483
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.63 E-value=0.16 Score=49.59 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
..+|+|+|.|-+|.++|..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 3579999999999999999999999999999654
No 484
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.62 E-value=0.21 Score=47.72 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
...|+|+|.|..|..+|..|+..|.+|+++|+++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 35799999999999999999999999999998764
No 485
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.61 E-value=0.21 Score=43.57 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
++..|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35789999999999999999999998 899999664
No 486
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.59 E-value=0.16 Score=46.48 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCc
Q 015331 7 IVIVGAGIAGLTTSLALHRLGI-RSLVLESSES 38 (409)
Q Consensus 7 VvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~~ 38 (409)
|.|||+|-.|..+|..|+..|+ +|+++|.++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 6899999999999999999887 9999998753
No 487
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.57 E-value=0.15 Score=49.84 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHcCCceEEEeCCCc
Q 015331 3 EDEDIVIVGAGIAGLT-TSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~-~A~~L~~~g~~V~v~E~~~~ 38 (409)
+..+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4457999999999999 69999999999999997653
No 488
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.52 E-value=0.33 Score=35.01 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCceEEEeC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRL-GIRSLVLES 35 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~-g~~V~v~E~ 35 (409)
..+++|+|.|-+|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999998 678999988
No 489
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.44 E-value=0.21 Score=47.28 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=32.6
Q ss_pred CCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCCC
Q 015331 2 EEDEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESSE 37 (409)
Q Consensus 2 ~~~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~~ 37 (409)
.++++|+|.|| |..|..++..|.++|++|+.+++..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 35679999999 9999999999999999999999754
No 490
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.42 E-value=0.18 Score=48.55 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|+|||-|.+|.++|..|+++|.+|.++|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 5799999999999999999999999999997653
No 491
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.41 E-value=0.19 Score=45.94 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
++|.|||.|..|...|..|++.|++|.++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 4799999999999999999999999999997753
No 492
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.39 E-value=0.23 Score=42.30 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5789999999999999999999998 599999664
No 493
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.38 E-value=0.16 Score=46.34 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 6 DIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 6 dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
+|.|||.|..|...|..|++.|++|+++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 489999999999999999999999999998753
No 494
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.38 E-value=0.22 Score=43.67 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-----------CceEEEeCCC
Q 015331 3 EDEDIVIVGAGIAGLTTSLALHRLG-----------IRSLVLESSE 37 (409)
Q Consensus 3 ~~~dVvIIGgG~aGl~~A~~L~~~g-----------~~V~v~E~~~ 37 (409)
++.+|+|||+|-.|..++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 5679999999999999999999974 3889988654
No 495
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.36 E-value=1.5 Score=44.17 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=40.7
Q ss_pred HHHHHHHHhhC--CCCeEEeCceEEEEEEe-CCeEE-EE---EcCCC--EEecCEEEEcCCCchHh
Q 015331 108 SLLMEALEREL--PSGTIRYSSKVVSVEES-GLFKL-VN---LADGA--VFKTKVLIGCDGVNSVV 164 (409)
Q Consensus 108 ~~l~~~l~~~~--~~~~i~~~~~v~~v~~~-~~~~~-v~---~~~g~--~~~ad~vV~AdG~~s~v 164 (409)
..+...|.+.+ .+++++.++.++++..+ ++.+. |. ..+|+ .+.|+.||.|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 45677776655 36899999999998764 44432 32 23554 57899999999998854
No 496
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.36 E-value=0.25 Score=41.98 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=29.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCceEEEeCC
Q 015331 4 DEDIVIVGA-GIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 4 ~~dVvIIGg-G~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
..+++|+|| |..|..+|..|++.|.+|.++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 358999997 999999999999999999999865
No 497
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.35 E-value=0.2 Score=47.34 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=30.1
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCceEEEeCC
Q 015331 5 EDIVIVG-AGIAGLTTSLALHRLGIRSLVLESS 36 (409)
Q Consensus 5 ~dVvIIG-gG~aGl~~A~~L~~~g~~V~v~E~~ 36 (409)
.+|+||| .|.-|.++|..|+++|++|.+++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 5799999 7999999999999999999999975
No 498
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.31 E-value=0.15 Score=52.53 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCc
Q 015331 5 EDIVIVGAGIAGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 5 ~dVvIIGgG~aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
.+|+|||+|.-|...|..++++|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998865
No 499
>PRK06849 hypothetical protein; Provisional
Probab=92.21 E-value=0.23 Score=47.29 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCc
Q 015331 1 MEEDEDIVIVGAGI-AGLTTSLALHRLGIRSLVLESSES 38 (409)
Q Consensus 1 M~~~~dVvIIGgG~-aGl~~A~~L~~~g~~V~v~E~~~~ 38 (409)
|..+.+|+|.|++. .|+.+|..|.++|++|+++|..+.
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 66788999999996 799999999999999999998764
No 500
>PRK08223 hypothetical protein; Validated
Probab=92.13 E-value=0.25 Score=44.32 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCC
Q 015331 4 DEDIVIVGAGIAGLTTSLALHRLGI-RSLVLESSE 37 (409)
Q Consensus 4 ~~dVvIIGgG~aGl~~A~~L~~~g~-~V~v~E~~~ 37 (409)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5789999999999999999999998 788999665
Done!