Your job contains 1 sequence.
>015333
MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQNPPKQPIPVVSYASKP
KDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVPTITPVSYPSRVA
PLPEAGEPASGEAEGEGDGERRRIQSEKKTLRFMRVPEQAQVSVPYPLLIKPESKKKESR
PVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFF
AEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLM
PNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALL
LAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQYNKVAH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015333
(409 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2041519 - symbol:AT2G42710 species:3702 "Arabi... 884 1.6e-88 1
TIGR_CMR|SPO_3513 - symbol:SPO_3513 "ribosomal protein L1... 382 2.4e-35 1
TIGR_CMR|CJE_0525 - symbol:CJE_0525 "ribosomal protein L1... 357 1.1e-32 1
UNIPROTKB|P96932 - symbol:rplA "50S ribosomal protein L1"... 341 5.4e-31 1
TIGR_CMR|GSU_2866 - symbol:GSU_2866 "ribosomal protein L1... 327 1.6e-29 1
TIGR_CMR|CBU_0227 - symbol:CBU_0227 "ribosomal protein L1... 321 7.1e-29 1
TIGR_CMR|DET_0992 - symbol:DET_0992 "ribosomal protein L1... 319 1.2e-28 1
TAIR|locus:2087388 - symbol:EMB3126 "EMBRYO DEFECTIVE 312... 311 8.2e-28 1
TIGR_CMR|BA_0098 - symbol:BA_0098 "ribosomal protein L1" ... 304 4.5e-27 1
TIGR_CMR|ECH_0955 - symbol:ECH_0955 "ribosomal protein L1... 292 8.4e-26 1
UNIPROTKB|Q06797 - symbol:rplA "50S ribosomal protein L1"... 291 1.1e-25 1
TIGR_CMR|CHY_2322 - symbol:CHY_2322 "ribosomal protein L1... 291 1.1e-25 1
TIGR_CMR|SO_0221 - symbol:SO_0221 "ribosomal protein L1" ... 277 3.3e-24 1
TIGR_CMR|APH_1027 - symbol:APH_1027 "ribosomal protein L1... 274 6.8e-24 1
UNIPROTKB|P0A7L0 - symbol:rplA "50S ribosomal subunit pro... 268 2.9e-23 1
UNIPROTKB|Q9KV33 - symbol:rplA "50S ribosomal protein L1"... 261 1.6e-22 1
TIGR_CMR|VC_0325 - symbol:VC_0325 "ribosomal protein L1" ... 261 1.6e-22 1
TIGR_CMR|CPS_4772 - symbol:CPS_4772 "ribosomal protein L1... 253 1.1e-21 1
TIGR_CMR|NSE_0681 - symbol:NSE_0681 "ribosomal protein L1... 152 5.2e-10 1
ASPGD|ASPL0000012808 - symbol:AN8225 species:162425 "Emer... 164 1.1e-09 1
SGD|S000002523 - symbol:MRPL1 "Mitochondrial ribosomal pr... 143 2.3e-07 1
POMBASE|SPAC1610.02c - symbol:SPAC1610.02c "mitochondrial... 137 7.7e-07 1
GENEDB_PFALCIPARUM|PFL0500w - symbol:PFL0500w "50S riboso... 132 6.5e-06 1
UNIPROTKB|Q8I5U9 - symbol:PFL0500w "Mitochondrial ribosom... 132 6.5e-06 1
>TAIR|locus:2041519 [details] [associations]
symbol:AT2G42710 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0015934 "large
ribosomal subunit" evidence=IEA;ISS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR002143
InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 HOGENOM:HOG000207015 TIGRFAMs:TIGR01169
HSSP:P27150 EMBL:AY091124 EMBL:AY113995 EMBL:AK118309
IPI:IPI00522914 RefSeq:NP_850375.1 UniGene:At.36979
ProteinModelPortal:Q8RWT4 SMR:Q8RWT4 STRING:Q8RWT4 PaxDb:Q8RWT4
PRIDE:Q8RWT4 EnsemblPlants:AT2G42710.1 GeneID:818871
KEGG:ath:AT2G42710 TAIR:At2g42710 InParanoid:Q8RWT4 OMA:KYAGYVN
PhylomeDB:Q8RWT4 ProtClustDB:CLSN2680207 Genevestigator:Q8RWT4
Uniprot:Q8RWT4
Length = 415
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 203/425 (47%), Positives = 262/425 (61%)
Query: 1 MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQ---NP-P------KQP 50
MAA++LLLSQARR L KP +SP R SS++ S NP P K+
Sbjct: 1 MAAMKLLLSQARRQGLIKPFSSPFQQIPRLFSSSSSSSSSSSSSSDSNPSPDSNESRKKA 60
Query: 51 IPV--VSYASKPKDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVP 108
+ + VSYA+KPKD+ + P +N + +N LQS P E A TRE+IRY+KD P
Sbjct: 61 VTIEPVSYAAKPKDQKSEP-KNVESTEN-LQS--P------ESANW--TREEIRYVKDSP 108
Query: 109 TITPVSYPSRVX---XXXXXXXXXXXXXXXXXXXXRRRIQSEKKTLR-FMRVP--EQAQV 162
+I PVSY RV R+RI+ E + R F+R E+
Sbjct: 109 SINPVSYAQRVAPLPEDRVAGENEGDRTPEEMERERKRIELENRARRRFLRANAVEEDTS 168
Query: 163 SVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVR 222
S+P P L+KPE K + +P+ DLM+AI+++K NAKA FDET+EAHVRL I ++ELIVR
Sbjct: 169 SLPLPTLLKPELKHGK-KPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVR 227
Query: 223 GTMNLPHGDKKAVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQ 282
GT+ LPH KK V+V +VGGLELIEEI SGK+D ++C +T +
Sbjct: 228 GTLALPHSVKKDVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPK 287
Query: 283 FMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVS 342
MPR++KIS+ILN HGLMPNPKQG+VT DV +AV++AK GH KF+MD TS +H LGK+S
Sbjct: 288 MMPRVYKISRILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMS 347
Query: 343 LKEELLRENVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALD 402
EE LRENVGAF+N TSK+AGYVN+FH+CSTMG +PVSIQSLSRA D
Sbjct: 348 FSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSLSRAAD 407
Query: 403 QYNKV 407
+ K+
Sbjct: 408 LHTKL 412
>TIGR_CMR|SPO_3513 [details] [associations]
symbol:SPO_3513 "ribosomal protein L1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002143
InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199
GO:GO:0006417 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424
HAMAP:MF_01318_B RefSeq:YP_168708.1 ProteinModelPortal:Q5LMQ0
SMR:Q5LMQ0 GeneID:3194818 KEGG:sil:SPO3513 PATRIC:23380497
Uniprot:Q5LMQ0
Length = 232
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 86/216 (39%), Positives = 117/216 (54%)
Query: 183 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXX 242
L + A+ +K+ A A FDETVE + L + PR + +VRG + LP+G K VRV
Sbjct: 21 LSVEQAVALIKSAASAKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFAR 80
Query: 243 XXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPN 302
IVG +L+E I SGK++ ++C +T MP + ++ KIL LMPN
Sbjct: 81 GPKAEEAQAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPVVGRLGKILGPRNLMPN 139
Query: 303 PKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXX 362
PK GTVT DVA+AVQ AK G ++FK++ +HAG+GKVS E L ENV AFV+
Sbjct: 140 PKVGTVTMDVAQAVQNAKGGEVQFKVEKAGVIHAGVGKVSFDEAKLVENVRAFVDAVAKA 199
Query: 363 XXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 398
T Y+ + STMGP V + S S
Sbjct: 200 KPAGAKGT-----YLKKIALSSTMGPGVSVDVASAS 230
>TIGR_CMR|CJE_0525 [details] [associations]
symbol:CJE_0525 "ribosomal protein L1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR002143
InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199
GO:GO:0006417 GO:GO:0006412 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863 ProtClustDB:PRK05424
HAMAP:MF_01318_B RefSeq:YP_178543.1 ProteinModelPortal:Q5HVZ2
SMR:Q5HVZ2 STRING:Q5HVZ2 GeneID:3231286 KEGG:cjr:CJE0525
PATRIC:20042772 BioCyc:CJEJ195099:GJC0-540-MONOMER Uniprot:Q5HVZ2
Length = 233
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 85/228 (37%), Positives = 116/228 (50%)
Query: 170 IKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPH 229
+K S+K +S L DAI +K A FDETVE ++L + PR + +VRG++ LP
Sbjct: 8 LKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEIALKLNVDPRHADQMVRGSVVLPA 67
Query: 230 GDKKAVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK 289
G K VRV IVG +L+EEI G ++ + +T M + K
Sbjct: 68 GTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVEEI-QKGNMNFDVLIATPNLMGLVGK 126
Query: 290 ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLR 349
+ +IL GLMPNPK GTVT DVA+AV AK G + F++D N+HAGLGKVS +E L
Sbjct: 127 VGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLW 186
Query: 350 ENVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSL 397
+NV FV Y+ + + TM PS + Q L
Sbjct: 187 DNVSTFVKAINKHKPAAAKGR-----YIKNAALSLTMSPSVKLETQEL 229
>UNIPROTKB|P96932 [details] [associations]
symbol:rplA "50S ribosomal protein L1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0005829
GO:GO:0005886 GO:GO:0005618 GO:GO:0006417 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
EMBL:BX842574 GO:GO:0003735 GO:GO:0000049 GO:GO:0019843
GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424
HAMAP:MF_01318_B PIR:F70613 RefSeq:NP_215155.1 RefSeq:NP_335081.1
RefSeq:YP_006513982.1 ProteinModelPortal:P96932 SMR:P96932
PRIDE:P96932 EnsemblBacteria:EBMYCT00000001871
EnsemblBacteria:EBMYCT00000072842 GeneID:13318527 GeneID:888043
GeneID:925953 KEGG:mtc:MT0669.1 KEGG:mtu:Rv0641 KEGG:mtv:RVBD_0641
PATRIC:18123195 TubercuList:Rv0641 Uniprot:P96932
Length = 235
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 79/214 (36%), Positives = 113/214 (52%)
Query: 186 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXXX 245
+ A K K + D TVE +RL + PRK + +VRGT+NLPHG K RV
Sbjct: 24 LQAAKLAKETSSTKQDATVEVAIRLGVDPRKADQMVRGTVNLPHGTGKTARVAVFAVGEK 83
Query: 246 XXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQ 305
+VG +LIE I G L+ + +T M ++ +I+++L GLMPNPK
Sbjct: 84 ADAAVAAGADVVGSDDLIERI-QGGWLEFDAAIATPDQMAKVGRIARVLGPRGLMPNPKT 142
Query: 306 GTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXXXX 365
GTVT DVA+AV + K G I F++D +N+H +GK S E+LL EN GA ++
Sbjct: 143 GTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPS 202
Query: 366 XXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLSR 399
+SK Y+ + +T GP PV S++R
Sbjct: 203 ----SSK-GRYLKKITVSTTTGPGIPVD-PSITR 230
>TIGR_CMR|GSU_2866 [details] [associations]
symbol:GSU_2866 "ribosomal protein L1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR002143
InterPro:IPR005878 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199
GO:GO:0006417 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424
HAMAP:MF_01318_B RefSeq:NP_953908.1 ProteinModelPortal:Q748Y3
SMR:Q748Y3 GeneID:2686759 KEGG:gsu:GSU2866 PATRIC:22028583
BioCyc:GSUL243231:GH27-2847-MONOMER Uniprot:Q748Y3
Length = 234
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 80/217 (36%), Positives = 111/217 (51%)
Query: 185 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXX 244
L++ I+ VK+ A A FDETVE VRL + PR + +VRG + LP+G K VRV
Sbjct: 23 LVEGIESVKSAAYAKFDETVEVAVRLGVDPRHADQMVRGAVVLPNGLGKDVRVLVFAKGE 82
Query: 245 XXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPK 304
VG +L+ +I G + + +T M + KI K+L GLMPNPK
Sbjct: 83 KEKEAREAGADYVGAEDLVTKI-QEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPK 141
Query: 305 QGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXXX 364
GTVT DV RAV+E+K G ++F+++ VHA +GKVS + L+EN+ A V
Sbjct: 142 VGTVTFDVGRAVKESKAGKVEFRVEKAGIVHAPVGKVSFDADKLKENLLALVEALLKAKP 201
Query: 365 XXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRAL 401
T YV + STMGP + I + L
Sbjct: 202 SAAKGT-----YVKKISISSTMGPGLNLDISDVQAKL 233
>TIGR_CMR|CBU_0227 [details] [associations]
symbol:CBU_0227 "ribosomal protein L1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417
GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 HOGENOM:HOG000207015 TIGRFAMs:TIGR01169
KO:K02863 OMA:YVTSTMG ProtClustDB:PRK05424 HAMAP:MF_01318_B
RefSeq:NP_819271.1 ProteinModelPortal:Q83ET3 SMR:Q83ET3
GeneID:1208108 KEGG:cbu:CBU_0227 PATRIC:17929145
BioCyc:CBUR227377:GJ7S-233-MONOMER Uniprot:Q83ET3
Length = 232
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 74/222 (33%), Positives = 112/222 (50%)
Query: 171 KPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHG 230
K ++K + L +AIK +K AKA F+E+++ + L I RK++ +RG LPHG
Sbjct: 10 KTLAEKVQRDKTYPLSEAIKLIKECAKAKFNESIDVAINLGIDSRKSDQAIRGATVLPHG 69
Query: 231 DKKAVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKI 290
+ V+V IVG +L E I G +D + +T + M + K+
Sbjct: 70 SGRTVKVAVFAQGDNVEKAKAAGADIVGLDDLAERI-QGGDIDFDVVIATPETMRVVGKL 128
Query: 291 SKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRE 350
++L GLMPNPK GTVT DVA AV+ AKQG ++++ D +H +GKV+ +E+ L E
Sbjct: 129 GQVLGPRGLMPNPKVGTVTTDVASAVKNAKQGQVRYRTDKNGIIHCTIGKVNFEEKALEE 188
Query: 351 NVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPV 392
N A +N T Y+ + STMGP +
Sbjct: 189 NFLALLNDIKKAKPSAAKGT-----YLKKLTLSSTMGPGIAI 225
>TIGR_CMR|DET_0992 [details] [associations]
symbol:DET_0992 "ribosomal protein L1" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:YP_181715.1
ProteinModelPortal:Q3Z7T4 STRING:Q3Z7T4 GeneID:3229744
KEGG:det:DET0992 PATRIC:21609033 BioCyc:DETH243164:GJNF-993-MONOMER
Uniprot:Q3Z7T4
Length = 237
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 72/214 (33%), Positives = 113/214 (52%)
Query: 187 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXXXX 246
+AI K A A FDETVE H+++ + P+ +RG LPHG K VRV
Sbjct: 25 EAIDVAKKMAAAKFDETVEMHLKMGLDPKNATQQLRGVAVLPHGLGKTVRVLVFAQGEAE 84
Query: 247 XXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQG 306
+ GG ELI+++ +G LD + ST M ++ K+ K+L + GLMPNPK G
Sbjct: 85 KAAQAAGADVYGGDELIKKV-EAGFLDFDVAISTPDMMSKVGKLGKVLGRRGLMPNPKSG 143
Query: 307 TVT--NDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXXX 364
TV D + ++EA++G ++FK+D + VH LGK S + + L EN+ + V+
Sbjct: 144 TVVPAEDFKQVIEEARKGRVEFKLDRSGIVHIILGKASFEGQALLENMTSVVDAIIRSKP 203
Query: 365 XXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 398
T Y+ S ++ +TMGP + ++++S
Sbjct: 204 -----TGAKGQYIKSAYLATTMGPGVKMDLRAVS 232
>TAIR|locus:2087388 [details] [associations]
symbol:EMB3126 "EMBRYO DEFECTIVE 3126" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] [GO:0045036 "protein targeting
to chloroplast" evidence=RCA] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 Prosite:PS01199 GO:GO:0005634 GO:GO:0009570
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0009941
EMBL:AL163818 GO:GO:0003735 GO:GO:0009535 GO:GO:0019843
GO:GO:0015934 SUPFAM:SSF56808 UniGene:At.24203 UniGene:At.69654
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 EMBL:X90855 EMBL:BT001191 EMBL:AY133519
EMBL:AY059929 EMBL:AY053410 IPI:IPI00522851 PIR:T49190 PIR:T51934
RefSeq:NP_191908.1 HSSP:Q5SLP7 ProteinModelPortal:Q9LY66 SMR:Q9LY66
STRING:Q9LY66 PaxDb:Q9LY66 PRIDE:Q9LY66 ProMEX:Q9LY66
EnsemblPlants:AT3G63490.1 GeneID:825524 KEGG:ath:AT3G63490
GeneFarm:61 TAIR:At3g63490 HOGENOM:HOG000207015 InParanoid:Q9LY66
OMA:AKGRYVK PhylomeDB:Q9LY66 ProtClustDB:CLSN2914724
Genevestigator:Q9LY66 TIGRFAMs:TIGR01169 Uniprot:Q9LY66
Length = 346
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 76/223 (34%), Positives = 114/223 (51%)
Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
K +E++ D+ AI +K A F E+VEAH RL I P+ + +R T++LP G +
Sbjct: 121 KLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQT 180
Query: 235 VRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKIL 294
V V IVG +LIE+I G ++ +K ++ M ++ + KIL
Sbjct: 181 VIVAVLAQGEKVDEAKSAGADIVGSDDLIEQI-KGGFMEFDKLIASPDMMVKVAGLGKIL 239
Query: 295 NQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGA 354
GLMPNPK GTVT ++ +A++E K+G ++F+ D T VH GKV+ EE L N A
Sbjct: 240 GPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLA 299
Query: 355 FVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSL 397
V Y S H+CS+MGPS ++I+ +
Sbjct: 300 AVKSVETNKPKGAKGV-----YWKSAHICSSMGPSIKLNIREM 337
>TIGR_CMR|BA_0098 [details] [associations]
symbol:BA_0098 "ribosomal protein L1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 InterPro:IPR023673 HOGENOM:HOG000207015
OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863 ProtClustDB:PRK05424
HAMAP:MF_01318_B RefSeq:NP_842666.1 RefSeq:YP_016701.1
RefSeq:YP_026384.1 ProteinModelPortal:Q81VU2 SMR:Q81VU2
DNASU:1087066 EnsemblBacteria:EBBACT00000011718
EnsemblBacteria:EBBACT00000017677 EnsemblBacteria:EBBACT00000020059
GeneID:1087066 GeneID:2814891 GeneID:2848851 KEGG:ban:BA_0098
KEGG:bar:GBAA_0098 KEGG:bat:BAS0098
BioCyc:BANT260799:GJAJ-109-MONOMER
BioCyc:BANT261594:GJ7F-111-MONOMER Uniprot:Q81VU2
Length = 230
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 70/212 (33%), Positives = 103/212 (48%)
Query: 187 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXXXX 246
+A++ VK A FD TVEA RL + P+K + +RG + LPHG K RV
Sbjct: 25 EAVELVKKTNTAKFDATVEAAFRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKA 84
Query: 247 XXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQG 306
VG + I +I G D + +T M + K+ ++L GLMPNPK G
Sbjct: 85 KEAEAAGADFVGDADYIGKI-QQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTG 143
Query: 307 TVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXXXXX 366
TVT DV +AV E K G +++++D N+H +GKVS ++ L EN +
Sbjct: 144 TVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAA 203
Query: 367 XXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 398
T Y+ + + STMGP V + +L+
Sbjct: 204 AKGT-----YMKNVTVASTMGPGVRVDVSTLA 230
>TIGR_CMR|ECH_0955 [details] [associations]
symbol:ECH_0955 "ribosomal protein L1" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 TIGRFAMs:TIGR01169 KO:K02863 OMA:YVTSTMG
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:YP_507743.1
ProteinModelPortal:Q2GFP0 STRING:Q2GFP0 GeneID:3927409
KEGG:ech:ECH_0955 PATRIC:20577292
BioCyc:ECHA205920:GJNR-958-MONOMER Uniprot:Q2GFP0
Length = 220
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 77/221 (34%), Positives = 110/221 (49%)
Query: 179 SRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVX 238
S V D+ +++V +AKA F E+V+ + L I K++ VRG + LP G + ++V
Sbjct: 6 SNEVYDVESGLRKVIESAKANFCESVDVAINLNINSSKSDEQVRGCVVLPKGLGREIKVA 65
Query: 239 XXXXXXXXXXXXXXXXXIVGGLELIEEIASSG-KLDVEKCFSTRQFMPRLFKISKILNQH 297
IVG ELIEE+ KLDV+ C +T FM + I+KIL
Sbjct: 66 VFAKGGYLEMAREAMADIVGDEELIEEVKKKQCKLDVDWCLTTPDFMASVSSIAKILGPK 125
Query: 298 GLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVN 357
GLMPNPK TVT ++A+A++ K G IKFK D T VHA +G + E L EN A ++
Sbjct: 126 GLMPNPKFNTVTFELAKAIKMIKSGQIKFKSDKTGIVHAKIGNIKFSIEDLLENFNAVIS 185
Query: 358 XXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 398
Y + STMG S V +++L+
Sbjct: 186 AVKQCKPASIKGL-----YFKDVFIISTMGKS--VKVENLN 219
>UNIPROTKB|Q06797 [details] [associations]
symbol:rplA "50S ribosomal protein L1" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417
GO:GO:0006412 GO:GO:0003735 EMBL:AL009126 GenomeReviews:AL009126_GR
GO:GO:0000049 GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 HOGENOM:HOG000207015 TIGRFAMs:TIGR01169
KO:K02863 ProtClustDB:PRK05424 HAMAP:MF_01318_B EMBL:D13303
EMBL:D50303 PIR:E69694 RefSeq:NP_387984.2 ProteinModelPortal:Q06797
SMR:Q06797 EnsemblBacteria:EBBACT00000001732 GeneID:936843
KEGG:bsu:BSU01030 PATRIC:18971715 GenoList:BSU01030
BioCyc:BSUB:BSU01030-MONOMER Uniprot:Q06797
Length = 232
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 69/209 (33%), Positives = 99/209 (47%)
Query: 184 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXX 243
D+ +A+ VK A FD TVE RL + PRK + +RG + LP+G K RV
Sbjct: 22 DVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKG 81
Query: 244 XXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNP 303
VG + I +I G D + +T M + KI ++L GLMPNP
Sbjct: 82 EKAKEAEAAGADFVGDTDYINKI-QQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNP 140
Query: 304 KQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXX 363
K GTVT +V +A+ E K G +++++D N+H +GKVS ++E L EN +
Sbjct: 141 KTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAK 200
Query: 364 XXXXXXTSKFAGYVNSFHMCSTMGPSFPV 392
YV + + STMGP V
Sbjct: 201 PAAAKGV-----YVKNVAVTSTMGPGVKV 224
>TIGR_CMR|CHY_2322 [details] [associations]
symbol:CHY_2322 "ribosomal protein L1" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 HOGENOM:HOG000207015 OMA:AKGRYVK
TIGRFAMs:TIGR01169 KO:K02863 ProtClustDB:PRK05424 HAMAP:MF_01318_B
RefSeq:YP_361131.1 ProteinModelPortal:Q3A9Q3 SMR:Q3A9Q3
STRING:Q3A9Q3 GeneID:3728765 KEGG:chy:CHY_2322 PATRIC:21277711
BioCyc:CHYD246194:GJCN-2321-MONOMER Uniprot:Q3A9Q3
Length = 231
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 73/220 (33%), Positives = 106/220 (48%)
Query: 174 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKK 233
+KK + + + +A VK + A FDETVE V+L + PR + VRG + LPHG K
Sbjct: 12 AKKVDKTKLYEPAEAFSLVKELSFAKFDETVEVAVKLGVDPRHADQQVRGAVVLPHGTGK 71
Query: 234 AVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKI 293
+V VG E IE+IA G +D + +T M + ++ KI
Sbjct: 72 TRKVLVFAKGEKAKEAEAAGADYVGAEEYIEKIAQ-GWIDFDVVVATPDMMGAVGRLGKI 130
Query: 294 LNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVG 353
L GLMP+PK GTVT +VA+A+ E K G I++++D VH +GKVS E L EN
Sbjct: 131 LGPKGLMPSPKTGTVTFEVAKAIAEIKAGKIEYRVDKAGIVHVPIGKVSFPVEKLVENFN 190
Query: 354 AFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVS 393
++ Y+ + STMGP ++
Sbjct: 191 TLMDALIKAKPAGAKGQ-----YLKGVTVSSTMGPGIKIN 225
>TIGR_CMR|SO_0221 [details] [associations]
symbol:SO_0221 "ribosomal protein L1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:NP_715861.1
ProteinModelPortal:Q8EK77 SMR:Q8EK77 GeneID:1168104
KEGG:son:SO_0221 PATRIC:23520135 Uniprot:Q8EK77
Length = 233
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 70/226 (30%), Positives = 109/226 (48%)
Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
+K + + ++ DA+ +K A A F E+V+ V L I PRK++ VRG LPHG +
Sbjct: 13 EKVDGTKLYEINDAVALLKELATAKFVESVDVAVNLGIDPRKSDQNVRGATVLPHGTGRD 72
Query: 235 VRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKIL 294
VRV +VG +L E+I +G+++ + ++ M + + +IL
Sbjct: 73 VRVAVFTQGANAEAAKAAGAELVGMDDLAEKI-KAGEMNFDVVIASPDAMRVVGMLGQIL 131
Query: 295 NQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGA 354
GLMPNPK GTVT +VA AV+ AK G ++++ D +H +GKV L+EN+ A
Sbjct: 132 GPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEA 191
Query: 355 FVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRA 400
++ YV + +TMG V SL A
Sbjct: 192 LISALKKAKPAVAKGV-----YVKKVSISTTMGAGVAVDQASLETA 232
>TIGR_CMR|APH_1027 [details] [associations]
symbol:APH_1027 "ribosomal protein L1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 TIGRFAMs:TIGR01169 RefSeq:YP_505586.1
ProteinModelPortal:Q2GJ65 STRING:Q2GJ65 GeneID:3931039
KEGG:aph:APH_1027 PATRIC:20950804 KO:K02863 OMA:YVTSTMG
ProtClustDB:PRK05424 BioCyc:APHA212042:GHPM-1034-MONOMER
HAMAP:MF_01318_B Uniprot:Q2GJ65
Length = 216
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 70/207 (33%), Positives = 102/207 (49%)
Query: 187 DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXXXXX 246
+ I Q+ + A F E+V+ ++L+ ++ +RG LP G + VRV
Sbjct: 12 EGIDQLLKSTTARFKESVDVAIKLSTGDSRSGDSIRGVAVLPKGLGREVRVAVLAKGEYA 71
Query: 247 XXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQG 306
+VG +LIEEI KLD + C +T FM ++ I+KIL GLMPNPK G
Sbjct: 72 KQAKDAGADVVGDSDLIEEIKKGRKLDFDWCIATPDFMSQVSAIAKILGPRGLMPNPKFG 131
Query: 307 TVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXXXXX 366
TVT D+A+ V K G ++F+ D VH +G V E L EN+ A V+
Sbjct: 132 TVTFDIAKMVGIVKSGQVRFRSDKYGIVHVKIGDVGFSREDLMENLRAVVSAVQGLKPA- 190
Query: 367 XXXTSKFAGYVNSFHMCSTMGPSFPVS 393
T K A + + + STMG SF ++
Sbjct: 191 ---TVKGA-FFKAVFLNSTMGKSFRIT 213
>UNIPROTKB|P0A7L0 [details] [associations]
symbol:rplA "50S ribosomal subunit protein L1"
species:83333 "Escherichia coli K-12" [GO:0015934 "large ribosomal
subunit" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
[GO:0045947 "negative regulation of translational initiation"
evidence=IDA] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0045947 GO:GO:0006412 EMBL:U00006 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 PDB:2RDO PDBsum:2RDO
EMBL:V00339 eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 PDB:1ML5 PDBsum:1ML5 HOGENOM:HOG000207015
OMA:AKGRYVK TIGRFAMs:TIGR01169 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11
PDBsum:3J12 PDBsum:3J14 PDB:1EG0 PDB:2GYA PDB:2GYC PDB:2WWQ
PDB:3E1B PDB:3E1D PDB:3FIK PDB:3IZT PDB:3IZU PDB:3J01 PDB:3KCR
PDB:487D PDBsum:1EG0 PDBsum:2GYA PDBsum:2GYC PDBsum:2WWQ
PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3KCR PDBsum:487D KO:K02863 ProtClustDB:PRK05424
HAMAP:MF_01318_B PIR:S12573 RefSeq:NP_418411.1 RefSeq:YP_491477.1
ProteinModelPortal:P0A7L0 SMR:P0A7L0 DIP:DIP-35746N IntAct:P0A7L0
MINT:MINT-1268287 SWISS-2DPAGE:P0A7L0 PaxDb:P0A7L0 PRIDE:P0A7L0
EnsemblBacteria:EBESCT00000004739 EnsemblBacteria:EBESCT00000018368
GeneID:12930515 GeneID:948483 KEGG:ecj:Y75_p3213 KEGG:eco:b3984
PATRIC:32123489 EchoBASE:EB0857 EcoGene:EG10864
BioCyc:EcoCyc:EG10864-MONOMER BioCyc:ECOL316407:JW3947-MONOMER
EvolutionaryTrace:P0A7L0 Genevestigator:P0A7L0 Uniprot:P0A7L0
Length = 234
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 67/228 (29%), Positives = 112/228 (49%)
Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
+K ++ D+ +AI +K A A F E+V+ V L I RK++ VRG LPHG ++
Sbjct: 13 EKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRS 72
Query: 235 VRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKIL 294
VRV +VG +L ++I G+++ + ++ M + ++ ++L
Sbjct: 73 VRVAVFTQGANAEAAKAAGAELVGMEDLADQI-KKGEMNFDVVIASPDAMRVVGQLGQVL 131
Query: 295 NQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGA 354
GLMPNPK GTVT +VA AV+ AK G ++++ D +H +GKV + L+EN+ A
Sbjct: 132 GPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEA 191
Query: 355 FVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALD 402
+ T Y+ + +TMG V LS +++
Sbjct: 192 LL-----VALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASVN 234
>UNIPROTKB|Q9KV33 [details] [associations]
symbol:rplA "50S ribosomal protein L1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR002143 InterPro:IPR005878
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B PIR:C82338 RefSeq:NP_229979.1
ProteinModelPortal:Q9KV33 SMR:Q9KV33 GeneID:2615091 KEGG:vch:VC0325
PATRIC:20079707 Uniprot:Q9KV33
Length = 233
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 64/215 (29%), Positives = 107/215 (49%)
Query: 184 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXX 243
D+ +A+ +K A A F E+V+ V L I RK++ VRG LPHG + +RV
Sbjct: 22 DINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQG 81
Query: 244 XXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNP 303
+VG +E + ++ G+++ + ++ M + ++ IL GLMPNP
Sbjct: 82 ANAEAAKAAGAELVG-MEDLADLVKKGEMNFDVVIASPDAMRVVGQLGTILGPRGLMPNP 140
Query: 304 KQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXX 363
K GTVT +VA AV+ AK G ++++ D +H +GKV+ + + L+EN+ A +
Sbjct: 141 KVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVTFEADQLKENLEALL-----VA 195
Query: 364 XXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 398
+S +V + +TMG V +LS
Sbjct: 196 LKKAKPSSAKGVFVKKVSISTTMGAGVAVDQNTLS 230
>TIGR_CMR|VC_0325 [details] [associations]
symbol:VC_0325 "ribosomal protein L1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863 ProtClustDB:PRK05424
HAMAP:MF_01318_B PIR:C82338 RefSeq:NP_229979.1
ProteinModelPortal:Q9KV33 SMR:Q9KV33 GeneID:2615091 KEGG:vch:VC0325
PATRIC:20079707 Uniprot:Q9KV33
Length = 233
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 64/215 (29%), Positives = 107/215 (49%)
Query: 184 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXX 243
D+ +A+ +K A A F E+V+ V L I RK++ VRG LPHG + +RV
Sbjct: 22 DINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFTQG 81
Query: 244 XXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNP 303
+VG +E + ++ G+++ + ++ M + ++ IL GLMPNP
Sbjct: 82 ANAEAAKAAGAELVG-MEDLADLVKKGEMNFDVVIASPDAMRVVGQLGTILGPRGLMPNP 140
Query: 304 KQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXX 363
K GTVT +VA AV+ AK G ++++ D +H +GKV+ + + L+EN+ A +
Sbjct: 141 KVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVTFEADQLKENLEALL-----VA 195
Query: 364 XXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 398
+S +V + +TMG V +LS
Sbjct: 196 LKKAKPSSAKGVFVKKVSISTTMGAGVAVDQNTLS 230
>TIGR_CMR|CPS_4772 [details] [associations]
symbol:CPS_4772 "ribosomal protein L1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 OMA:AKGRYVK TIGRFAMs:TIGR01169 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:YP_271416.1
ProteinModelPortal:Q47UV6 SMR:Q47UV6 STRING:Q47UV6 GeneID:3518789
KEGG:cps:CPS_4772 PATRIC:21472361
BioCyc:CPSY167879:GI48-4778-MONOMER Uniprot:Q47UV6
Length = 232
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 65/217 (29%), Positives = 108/217 (49%)
Query: 184 DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVXXXXXX 243
D+ +A+ +K A A F E+V+ V L I RK++ VRG LP+G + VRV
Sbjct: 22 DINEAVSLLKEFATANFRESVDVAVNLGIDARKSDQNVRGATVLPNGTGREVRVAVFTQG 81
Query: 244 XXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNP 303
IVG +L ++ +G+++ + ++ M + ++ +IL GLMPNP
Sbjct: 82 ENAEKAKAAGADIVGMEDLAAQV-KAGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNP 140
Query: 304 KQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXX 363
K GTVT DVA AV+ AK G I+++ D +H +GK + L+EN+ + +
Sbjct: 141 KVGTVTPDVAGAVKNAKSGQIRYRNDKNGIIHTTIGKADFEPAQLQENLESLLEALKKAK 200
Query: 364 XXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRA 400
+K Y+ + +TMG V+ +L++A
Sbjct: 201 PA----NAK-GQYLKKVSLSTTMGAGVVVNQATLTQA 232
>TIGR_CMR|NSE_0681 [details] [associations]
symbol:NSE_0681 "ribosomal protein L1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0042255 "ribosome
assembly" evidence=ISS] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 HOGENOM:HOG000207015 KO:K02863
ProtClustDB:PRK05424 HAMAP:MF_01318_B RefSeq:YP_506559.1
ProteinModelPortal:Q2GD87 STRING:Q2GD87 GeneID:3932130
KEGG:nse:NSE_0681 PATRIC:22681381 OMA:CESVFAT
BioCyc:NSEN222891:GHFU-695-MONOMER Uniprot:Q2GD87
Length = 209
Score = 152 (58.6 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 43/132 (32%), Positives = 61/132 (46%)
Query: 258 GGLELIEEIASSGKL--DVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARA 315
GG ELIE I + + ++ M +L KI++IL GLMP+ K G VT+D+A A
Sbjct: 72 GGEELIERIKAKKNFVKGYKYSLASPPMMSKLSKIARILGPRGLMPDSKYGLVTHDIAAA 131
Query: 316 VQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXXXXXXXXTSKFAG 375
V G FK + +H+ +G + + + LREN F S
Sbjct: 132 VTAILGGKALFKTNKAGVMHSKIGNLGMGFDKLRENFQIFCESVFATRPKNVSLQS---- 187
Query: 376 YVNSFHMCSTMG 387
YV S + STMG
Sbjct: 188 YVRSISVSSTMG 199
>ASPGD|ASPL0000012808 [details] [associations]
symbol:AN8225 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412 GO:GO:0003723
EMBL:BN001302 GO:GO:0003735 EMBL:AACD01000144 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 OMA:YLRAFEV OrthoDB:EOG49631S RefSeq:XP_681494.1
ProteinModelPortal:Q5AU05 STRING:Q5AU05
EnsemblFungi:CADANIAT00004275 GeneID:2868991 KEGG:ani:AN8225.2
HOGENOM:HOG000159984 Uniprot:Q5AU05
Length = 310
Score = 164 (62.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 54/228 (23%), Positives = 99/228 (43%)
Query: 173 ESKKKESRPV--LDLMDAIKQVKAN--AKATFDETVEAHVRLAIPPRKTELIVRGTMNLP 228
E K+K+ + V L DA++ ++A + E H+RL R+ ++R + P
Sbjct: 73 EFKQKDLKDVEQFALCDAMRYLRAFEVGREPAVSKYEVHIRLKT--RRDGPVIRNMIRFP 130
Query: 229 HGDKKAVRVXXXXX-XXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRL 287
H + R+ ++ G + + E+ SG+++ ++C + MP L
Sbjct: 131 HSVQTESRICVICPPGSKHAKDALAAGAVLVGEDEVFEVVKSGRIEFDRCLAHPDSMPAL 190
Query: 288 FK--ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKE 345
K + +IL GLMP+ K GTV DVA V+ + G + + D V +G++
Sbjct: 191 AKAGLGRILGPRGLMPSAKTGTVVEDVAARVEMLRGGTVYRERDAV--VRLPIGQLGFSP 248
Query: 346 ELLRENVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVS 393
E LR+N+ ++ +K + + ST GP F ++
Sbjct: 249 EQLRDNLRVTIDQVKKDAASLNDRITK---EIYEVVLSSTHGPGFSLN 293
>SGD|S000002523 [details] [associations]
symbol:MRPL1 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;IPI] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IPI] [GO:0006412 "translation" evidence=IEA] [GO:0032543
"mitochondrial translation" evidence=IC] InterPro:IPR002143
InterPro:IPR005879 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 SGD:S000002523
Prosite:PS01199 EMBL:BK006938 GO:GO:0003723 GO:GO:0005762
GO:GO:0003735 GO:GO:0032543 EMBL:Z48758 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
InterPro:IPR023673 TIGRFAMs:TIGR01170 OMA:YLRAFEV OrthoDB:EOG49631S
EMBL:AY557683 PIR:S52681 RefSeq:NP_010401.1
ProteinModelPortal:Q04599 SMR:Q04599 DIP:DIP-5223N IntAct:Q04599
MINT:MINT-569104 STRING:Q04599 PaxDb:Q04599 PeptideAtlas:Q04599
EnsemblFungi:YDR116C GeneID:851694 KEGG:sce:YDR116C CYGD:YDR116c
HOGENOM:HOG000248778 NextBio:969353 Genevestigator:Q04599
GermOnline:YDR116C Uniprot:Q04599
Length = 285
Score = 143 (55.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 35/139 (25%), Positives = 72/139 (51%)
Query: 256 IVGGLELIEEIASSG-KLDVEKCFSTRQFMPRL-FKISKILNQHGLMPNPKQGTVTNDVA 313
++GG +L+ +I S +D +K F+T +P L ++++IL G++P+ K+GTV++D++
Sbjct: 149 LIGGADLVAKIKSGEISVDFDKAFATPDIVPALQSQVARILGPRGVLPSVKKGTVSDDIS 208
Query: 314 RAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNXXXXXXXXXXXXTSKF 373
+QE+ G + F+ S + G+GK + + +N+ ++ SK
Sbjct: 209 SLLQESL-GSMPFRQRGNS-ISIGVGKCYFTDREILQNI---ISARAAFKTAVDNQKSKK 263
Query: 374 AGYVNSFHMCSTMGPSFPV 392
++ + ST GP +
Sbjct: 264 PNILSKTTLSSTHGPGIVI 282
>POMBASE|SPAC1610.02c [details] [associations]
symbol:SPAC1610.02c "mitochondrial ribosomal protein
subunit L1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR002143 InterPro:IPR005879
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 PIRSF:PIRSF002155 PomBase:SPAC1610.02c EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0005762
GO:GO:0003735 GO:GO:0032543 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 TIGRFAMs:TIGR01170
RefSeq:NP_001018241.2 ProteinModelPortal:Q9P6M9 STRING:Q9P6M9
EnsemblFungi:SPAC1610.02c.1 GeneID:3361520 KEGG:spo:SPAC1610.02c
OMA:YLRAFEV OrthoDB:EOG49631S NextBio:20811562 Uniprot:Q9P6M9
Length = 253
Score = 137 (53.3 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 37/184 (20%), Positives = 87/184 (47%)
Query: 176 KKESRPVLDLM--DAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKK 233
KK + P L + +A K +K+ + + +A+ + RG + PH ++
Sbjct: 38 KKSNFPALAMTVPEATKYLKS-VSISVPYVGSYMLSIALKSNRRAPSARGQIAFPHPFQE 96
Query: 234 AVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKI 293
++ VG +L+++I + L+ KCF+ L +++K+
Sbjct: 97 PPKICVFAKGAAADEALKLGATYVGAEDLVKKIQTE-PLEFSKCFAHPNSAELLPQVAKL 155
Query: 294 LNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVG 353
L LMP+ K+GT+++++ ++ A + ++ ++ +++ +GK+ ++ L+EN+
Sbjct: 156 LGSKRLMPSIKRGTISDELKPLIESALTA-VDYRQNDAGSINLPVGKLGFSDKELQENIE 214
Query: 354 AFVN 357
A V+
Sbjct: 215 ALVS 218
>GENEDB_PFALCIPARUM|PFL0500w [details] [associations]
symbol:PFL0500w "50S ribosomal protein L1,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS] [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 EMBL:AE014188 SUPFAM:SSF56808
GO:GO:0020011 GO:GO:0022625 Gene3D:3.30.190.20 Gene3D:3.40.50.790
RefSeq:XP_001350509.1 ProteinModelPortal:Q8I5U9
EnsemblProtists:PFL0500w:mRNA GeneID:811153 KEGG:pfa:PFL0500w
EuPathDB:PlasmoDB:PF3D7_1210000 HOGENOM:HOG000281192
ProtClustDB:CLSZ2433515 Uniprot:Q8I5U9
Length = 339
Score = 132 (51.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 52/227 (22%), Positives = 104/227 (45%)
Query: 185 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELI----VRGTMNLPHGDKKA--VRVX 238
LM+AI+++K A F E+++ + L+ P+K+++ ++ + PH KK +V
Sbjct: 121 LMEAIEKIKTLAIHKFVESIDIY--LSFNPKKSKMTKNDNIKTFITFPHNLKKKREKKVY 178
Query: 239 XXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEK-----CFSTRQFMPRLFKISKI 293
+VG +LI +I ++ ++K T + +L ++ K
Sbjct: 179 VVTNAKLQKIASQSGADVVGEDDLINKIKER-EIRLQKRNNNFLICTNDCIHKLTRVGKE 237
Query: 294 LNQHGLMPNPKQGTVTND--VARAVQEAKQGHIK-FKMDNTSNVHAGLGKVSLKEELLRE 350
+ + GLMPN K GT+ ++ + + V+ K + FK++ + ++ +G V + + +RE
Sbjct: 238 IGRKGLMPNEKCGTLVSEFLLPKHVKLFKSENTYIFKLNKLNTLNINIGDVYMSNDEIRE 297
Query: 351 NVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSL 397
N+ N F +V + ++ STMG F + SL
Sbjct: 298 NI----NHLFEHLENLEFFHFNFK-HVKTIYLSSTMGFPFKIKKNSL 339
>UNIPROTKB|Q8I5U9 [details] [associations]
symbol:PFL0500w "Mitochondrial ribosomal protein L12,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=ISS] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 EMBL:AE014188 SUPFAM:SSF56808
GO:GO:0020011 GO:GO:0022625 Gene3D:3.30.190.20 Gene3D:3.40.50.790
RefSeq:XP_001350509.1 ProteinModelPortal:Q8I5U9
EnsemblProtists:PFL0500w:mRNA GeneID:811153 KEGG:pfa:PFL0500w
EuPathDB:PlasmoDB:PF3D7_1210000 HOGENOM:HOG000281192
ProtClustDB:CLSZ2433515 Uniprot:Q8I5U9
Length = 339
Score = 132 (51.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 52/227 (22%), Positives = 104/227 (45%)
Query: 185 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELI----VRGTMNLPHGDKKA--VRVX 238
LM+AI+++K A F E+++ + L+ P+K+++ ++ + PH KK +V
Sbjct: 121 LMEAIEKIKTLAIHKFVESIDIY--LSFNPKKSKMTKNDNIKTFITFPHNLKKKREKKVY 178
Query: 239 XXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEK-----CFSTRQFMPRLFKISKI 293
+VG +LI +I ++ ++K T + +L ++ K
Sbjct: 179 VVTNAKLQKIASQSGADVVGEDDLINKIKER-EIRLQKRNNNFLICTNDCIHKLTRVGKE 237
Query: 294 LNQHGLMPNPKQGTVTND--VARAVQEAKQGHIK-FKMDNTSNVHAGLGKVSLKEELLRE 350
+ + GLMPN K GT+ ++ + + V+ K + FK++ + ++ +G V + + +RE
Sbjct: 238 IGRKGLMPNEKCGTLVSEFLLPKHVKLFKSENTYIFKLNKLNTLNINIGDVYMSNDEIRE 297
Query: 351 NVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSL 397
N+ N F +V + ++ STMG F + SL
Sbjct: 298 NI----NHLFEHLENLEFFHFNFK-HVKTIYLSSTMGFPFKIKKNSL 339
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 409 358 0.00081 117 3 11 23 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 576 (61 KB)
Total size of DFA: 197 KB (2112 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.72u 0.11s 30.83t Elapsed: 00:00:01
Total cpu time: 30.72u 0.11s 30.83t Elapsed: 00:00:01
Start: Tue May 21 06:44:38 2013 End: Tue May 21 06:44:39 2013