Query 015333
Match_columns 409
No_of_seqs 157 out of 1193
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u42_A 50S ribosomal protein L 100.0 1.2E-61 4.2E-66 460.9 26.0 216 175-396 13-229 (229)
2 3qoy_A 50S ribosomal protein L 100.0 7.3E-61 2.5E-65 458.8 26.0 221 175-401 13-237 (242)
3 2wwq_5 50S ribosomal protein L 100.0 1.6E-60 5.5E-65 454.5 19.9 221 175-401 13-233 (234)
4 3bbo_D Ribosomal protein L1; l 100.0 1.4E-59 4.6E-64 467.7 17.0 237 157-399 103-345 (352)
5 3j21_A 50S ribosomal protein L 100.0 3.5E-55 1.2E-59 413.1 15.7 200 184-393 7-215 (216)
6 2zkr_5 60S ribosomal protein L 100.0 2.8E-54 9.6E-59 405.9 17.6 199 184-393 5-212 (212)
7 1i2a_A 50S ribosomal protein L 100.0 1.5E-53 5.3E-58 402.6 19.8 199 185-395 6-214 (219)
8 1mzp_A 50S ribosomal protein L 100.0 1.3E-51 4.3E-56 389.1 19.4 196 185-393 8-216 (217)
9 3iz5_A 60S ribosomal protein L 100.0 1.2E-52 4.2E-57 395.5 -1.4 199 184-393 8-216 (216)
10 2ftc_A Mitochondrial ribosomal 100.0 3.5E-48 1.2E-52 358.8 20.2 183 203-397 2-188 (189)
11 3o58_A L10A, 60S ribosomal pro 100.0 2E-52 7E-57 394.2 -13.9 199 184-393 8-217 (217)
12 2ov7_A 50S ribosomal protein L 100.0 2.3E-31 8E-36 235.3 16.4 125 175-395 12-136 (137)
13 3iz5_A 60S ribosomal protein L 34.6 19 0.00064 33.3 2.4 22 288-310 117-138 (216)
14 1nsj_A PRAI, phosphoribosyl an 24.8 25 0.00085 32.1 1.4 26 235-260 4-29 (205)
15 1v5x_A PRA isomerase, phosphor 24.4 25 0.00087 32.0 1.4 26 235-260 3-28 (203)
No 1
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=1.2e-61 Score=460.91 Aligned_cols=216 Identities=41% Similarity=0.643 Sum_probs=207.5
Q ss_pred ccCCCCCccCHHHHHHHHHHHcccCCCccEEEEEEeCCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCC
Q 015333 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGA 254 (409)
Q Consensus 175 ~k~~~~~~~~l~EAI~~lK~~ak~kF~ETVeL~V~L~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGA 254 (409)
.+.+....|++.|||+++|+.+.++|+||||++|+|++|++|++++|||+|.|||++++..+|||||+++++++|+++||
T Consensus 13 ~~~d~~k~y~~~eAi~~lk~~~~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGA 92 (229)
T 3u42_A 13 EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGA 92 (229)
T ss_dssp GSSCTTCCBCHHHHHHHHHHHCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTC
T ss_pred hccCccCCCCHHHHHHHHHHhCCCCCCccEEEEEEEccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCC
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeccHhHHHHHHhcCcccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCe
Q 015333 255 DIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSN 333 (409)
Q Consensus 255 d~VGgeeLIekI~~~~kL~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~ 333 (409)
++||++||+++|+ ++|++||+|||||+||+.|++ ||++||||||||+|+.|||+.|+.++|+++++|+++||+++.|+
T Consensus 93 d~vG~~dLi~kIk-~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~dk~g~ 171 (229)
T 3u42_A 93 DYVGGEEIIQKIL-DGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGA 171 (229)
T ss_dssp SEEECTHHHHHHH-TTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECCTTSE
T ss_pred ceeCcHHHHHHHh-cCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeCCCCe
Confidence 9999999999998 599999999999999999975 99999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEehhh
Q 015333 334 VHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQS 396 (409)
Q Consensus 334 i~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~~ 396 (409)
+|++||+++|++|||.|||.+++++|.+.+|.+.||. ||+++||||||||+++|+..|
T Consensus 172 i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~-----~ik~v~lssTmGp~i~id~~s 229 (229)
T 3u42_A 172 IHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGT-----FLRSVYVTTVMGPSVRINPHS 229 (229)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSC-----SEEEEEEECSSSCCEEBCTTC
T ss_pred ecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCC-----eEEEEEEECCCCcCeEeCCCC
Confidence 9999999999999999999999999999999987764 899999999999999998764
No 2
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=7.3e-61 Score=458.79 Aligned_cols=221 Identities=40% Similarity=0.657 Sum_probs=210.0
Q ss_pred ccCCCCCccCHHHHHHHHHHHccc---CCCccEEEEEEeCCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHH
Q 015333 175 KKKESRPVLDLMDAIKQVKANAKA---TFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARA 251 (409)
Q Consensus 175 ~k~~~~~~~~l~EAI~~lK~~ak~---kF~ETVeL~V~L~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAke 251 (409)
.+.+....|++.|||+++++.+.. +|+||||++|+|+||++|++++|||+|.|||++++..+|||||+++++++|++
T Consensus 13 ~~~~~~~~y~l~eAi~~~k~~~~~~~rkF~etVel~i~L~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~ 92 (242)
T 3qoy_A 13 KLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEE 92 (242)
T ss_dssp HTSCTTCCBCHHHHHHHHHHHHHHHCCSSCCEEEEEEEESCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHH
T ss_pred HhccccCccCHHHHHHHHHhhcccccCCCCCcEEEEEEeccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHH
Confidence 456777899999999999998854 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeccHhHHHHH-HhcCcccccEEEEcCcchhhHHhhhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecC
Q 015333 252 AGADIVGGLELIEEI-ASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDN 330 (409)
Q Consensus 252 aGAd~VGgeeLIekI-~~~~kL~fD~fLAtpd~mp~L~kLGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k 330 (409)
+||++||++||+++| + +++++||+|||||+||+.|++|||+||||||||+|+.|||++||.++|+++++|+++||+++
T Consensus 93 aGad~vg~~dLi~ki~k-~g~~~fD~~iAtpd~m~~l~~LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~G~v~fr~~k 171 (242)
T 3qoy_A 93 AGADYVGGDELINKILK-EEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDK 171 (242)
T ss_dssp TTCSEEESHHHHHHHHH-HTCCCCSEEEECTTTHHHHGGGHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHTTEEEEECCT
T ss_pred cCCCEECcHHHHHHHHh-CCCccCCEEEECHHHHHHHHHHhHHhccccCCCcccCCccchhHHHHHHHHhcCcEEEEecC
Confidence 999999999999999 6 58999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCeEEEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEehhhhhHHH
Q 015333 331 TSNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRAL 401 (409)
Q Consensus 331 ~g~i~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~~~~~a~ 401 (409)
.+|+|++||+++|++|||+|||.+++++|.+.+|.+.| |+||+++||||||||+++|+.+++..+.
T Consensus 172 ~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~k-----g~~Ik~v~lkSTmGp~i~i~~~~~~~~~ 237 (242)
T 3qoy_A 172 AGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAK-----GQYIKNMAVSLTMSPSVKLDINEVLKKL 237 (242)
T ss_dssp TSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCC-----SCSEEEEEEEETTSCCEEBCHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccC-----CceEEEEEEECCCCCCEEEEhhHhChhh
Confidence 99999999999999999999999999999999998765 5699999999999999999999886554
No 3
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1.6e-60 Score=454.47 Aligned_cols=221 Identities=38% Similarity=0.612 Sum_probs=210.2
Q ss_pred ccCCCCCccCHHHHHHHHHHHcccCCCccEEEEEEeCCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCC
Q 015333 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGA 254 (409)
Q Consensus 175 ~k~~~~~~~~l~EAI~~lK~~ak~kF~ETVeL~V~L~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGA 254 (409)
.+.+.+..|++.|||+.+++.+.++|+||||++|+|++|++|.+++|||+|.|||+++++.+|||||+++++++|+++||
T Consensus 13 ~~~~~~~~y~~~eAv~~lk~~~~~kF~etvel~i~L~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGa 92 (234)
T 2wwq_5 13 EKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGA 92 (234)
T ss_dssp TTSCCSSEECHHHHHHHHHHTCCCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTC
T ss_pred hhccccCccCHHHHHHHHHHhccCCCCceEEEEEEECCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCC
Confidence 45677789999999999998889999999999999999999989999999999999999999999999999999999999
Q ss_pred CeeccHhHHHHHHhcCcccccEEEEcCcchhhHHhhhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCeE
Q 015333 255 DIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNV 334 (409)
Q Consensus 255 d~VGgeeLIekI~~~~kL~fD~fLAtpd~mp~L~kLGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~i 334 (409)
++||++||+++|+ +++++||+|||||+||+.|++||++||||||||+|+.|||+.||.++|+++++|+++||+++.+|+
T Consensus 93 d~vg~edLi~kik-~~~~~fD~~iAtp~~m~~l~~LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~~r~~k~~~i 171 (234)
T 2wwq_5 93 ELVGMEDLADQIK-KGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGII 171 (234)
T ss_dssp SEECSHHHHHHHH-HTCCCSSEEEECHHHHHHTTSSCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEEECCSSSCEE
T ss_pred CEEcHHHHHHHHH-cCcccCCEEEECHHHHHHHHHHhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeEEEecCCcEE
Confidence 9999999999998 488999999999999999999999999999999999999999999999999988899999999999
Q ss_pred EEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEehhhhhHHH
Q 015333 335 HAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRAL 401 (409)
Q Consensus 335 ~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~~~~~a~ 401 (409)
|++||+++|++|||.|||.+++++|.+.+|.+.||. ||+++||||||||+++|+..+++.+|
T Consensus 172 ~v~VG~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~-----~Ik~v~lksTmgp~i~id~~~~~~~~ 233 (234)
T 2wwq_5 172 HTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGV-----YIKKVSISTTMGAGVAVDQAGLSASV 233 (234)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSC-----CEEEEEEEESSSCEEEESSSCCCSSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHhCcccccCC-----eEEEEEEECCCCCCEEEehHHhhhcc
Confidence 999999999999999999999999999999886653 99999999999999999998886654
No 4
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.4e-59 Score=467.66 Aligned_cols=237 Identities=39% Similarity=0.619 Sum_probs=208.3
Q ss_pred hhhhccccCCCcccC------CccccCCCCCccCHHHHHHHHHHHcccCCCccEEEEEEeCCCCCCCCCceeeeEEcCCC
Q 015333 157 PEQAQVSVPYPLLIK------PESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHG 230 (409)
Q Consensus 157 ~~~~~~~~p~p~~~~------~~s~k~~~~~~~~l~EAI~~lK~~ak~kF~ETVeL~V~L~id~kK~~~~IRG~V~LPH~ 230 (409)
+++++++++..+..+ ....+.+....|++.|||+++|+.++++|+||||++|+|+||++|.+++|||+|.|||+
T Consensus 103 ~~~~~~~~~~k~m~k~~K~~~~~~~~~d~~~~Y~l~EAi~llK~~~~~KFdETVEl~I~L~vDpkk~dq~vRGtV~LPhg 182 (352)
T 3bbo_D 103 PKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKG 182 (352)
T ss_dssp -------------CCCCCSSTTTTTSCCSSSCCCTTTTHHHHSTTCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTT
T ss_pred ccccccccchhhhhhhhHHHHHHHhcccccCCCCHHHHHHHHHhccccCCCceEEEEEEeCCCCcccccccceeecCCCC
Confidence 477777777655432 22234566788999999999999999999999999999999999989999999999999
Q ss_pred CCCCcEEEEEcCchhHHHHHHcCCCeeccHhHHHHHHhcCcccccEEEEcCcchhhHHhhhhhhhcCCCCCCCCCCCccc
Q 015333 231 DKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTN 310 (409)
Q Consensus 231 ~~k~~kIcVFadd~~aeeAkeaGAd~VGgeeLIekI~~~~kL~fD~fLAtpd~mp~L~kLGriLGpKGkMP~pK~GTVt~ 310 (409)
+++..+|||||+|+++++|+++||++||++||+++|+ +++++||+||||++||+.|++||++||||||||+|+.|||+.
T Consensus 183 tgk~~kVcVfa~ge~~eeAk~AGAdvVG~edLikkIK-kg~~dFD~fIAtpdmM~~lgrLGkiLGPRGlMPnPk~GTVt~ 261 (352)
T 3bbo_D 183 TGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIK-GGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTP 261 (352)
T ss_dssp SSSSSCEEEECCTTTTHHHHTTTCSEEECTTTHHHHT-TTCCCCSEEEECSSSHHHHGGGGGTTTTTTCSCCTTTTCBSS
T ss_pred CCCccEEEEEeCchhHHHHHHcCCCccCHHHHHHHHH-hchhhcCEEEECHHHHHHHHhhcccccccCCCCCCcCCcccc
Confidence 9999999999999999999999999999999999998 589999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCceEEEecCCCeEEEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCce
Q 015333 311 DVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSF 390 (409)
Q Consensus 311 DI~~~I~~~k~Gsv~fr~~k~g~i~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i 390 (409)
||.++|+++++|+++||+++.+|+|++||+++|++|||+|||.+++++|.+.+|.+.||. ||++|||||||||++
T Consensus 262 Dva~aV~e~K~G~v~fR~dK~g~ihv~VGk~sfs~EqL~ENI~Avi~~L~k~kP~~~KG~-----yIksv~LkSTMGPgi 336 (352)
T 3bbo_D 262 NVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGV-----YWKSAHISSSMGPSI 336 (352)
T ss_dssp CHHHHHTTTTTCCEEEECCSSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSC-----SEEEEECCBSSSCCC
T ss_pred cHHHHHHHHHcCeeEEEeCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCc-----eEEEEEEECCCCCCE
Confidence 999999999988899999999999999999999999999999999999999999886653 999999999999999
Q ss_pred EEehhhhhH
Q 015333 391 PVSIQSLSR 399 (409)
Q Consensus 391 ~I~~~~~~~ 399 (409)
+|+.+++.+
T Consensus 337 ~I~~~~l~d 345 (352)
T 3bbo_D 337 RLNIREMLD 345 (352)
T ss_dssp EECTTC---
T ss_pred EEEhhhccc
Confidence 999887643
No 5
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.5e-55 Score=413.10 Aligned_cols=200 Identities=32% Similarity=0.473 Sum_probs=188.0
Q ss_pred CHHHHHHHHHHHc-ccCCCccEEEEEEeC-CCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeeccHh
Q 015333 184 DLMDAIKQVKANA-KATFDETVEAHVRLA-IPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLE 261 (409)
Q Consensus 184 ~l~EAI~~lK~~a-k~kF~ETVeL~V~L~-id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGAd~VGgee 261 (409)
.+.|||+.+++.+ .++|+|||||+|+|+ +|++|++++|||+|.|||+++++.+|||||+++++++|+++||+++|+++
T Consensus 7 ~~~eav~~~~~~~~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGad~vg~e~ 86 (216)
T 3j21_A 7 KIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAE 86 (216)
T ss_dssp SCCCCTTTTCCCCCCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTCCCCCTTH
T ss_pred HHHHHHHHHHHhCcccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCCCccCHHH
Confidence 3679999999888 599999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc------CcccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCeE
Q 015333 262 LIEEIASS------GKLDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNV 334 (409)
Q Consensus 262 LIekI~~~------~kL~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~i 334 (409)
| +++.++ ++.+||+||||++||+.|++ ||++||||||||+|+.||+ +||.++|++++ +++.|++++++|+
T Consensus 87 L-~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv-~dv~~~v~~~k-~~v~~r~~k~~~i 163 (216)
T 3j21_A 87 L-EEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTL-TDLTPIVEKLK-KTVRIQLKNNPVV 163 (216)
T ss_dssp H-HHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCB-CSHHHHHHHHT-CEEEEEEETTTEE
T ss_pred H-HHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcH-HHHHHHHHHHH-hhceeecCCCCEE
Confidence 8 677542 23599999999999999999 9999999999999999999 99999999999 5899999999999
Q ss_pred EEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEe
Q 015333 335 HAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 393 (409)
Q Consensus 335 ~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~ 393 (409)
|++||+++|++|||.|||.+++++|.+++|.+ |+||+++||||||||+++||
T Consensus 164 ~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~-------~k~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 164 HAPVGTEKMSDEEIAENIEAVLNAIIGKLERG-------ESQVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp ECCCEESSSCHHHHHHHHHHHHHHHHHSCCCS-------SCSEEEEEEEESSSCCEECC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHhcccc-------ccceEEEEEECCCCCCEEcc
Confidence 99999999999999999999999999998876 88999999999999999986
No 6
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.8e-54 Score=405.90 Aligned_cols=199 Identities=22% Similarity=0.394 Sum_probs=187.7
Q ss_pred CHHHHHH-HHHHHcccCCCccEEEEEEe-CCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeeccHh
Q 015333 184 DLMDAIK-QVKANAKATFDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLE 261 (409)
Q Consensus 184 ~l~EAI~-~lK~~ak~kF~ETVeL~V~L-~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGAd~VGgee 261 (409)
.+.|||+ +++..+.++|+|||||+|+| ++|+++.++++||+|.|||++++..+|||||+++++++|+++||++||++|
T Consensus 5 ~l~eAv~~llk~~~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~ 84 (212)
T 2zkr_5 5 EIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADDVLDEDE 84 (212)
T ss_dssp THHHHHHHHHHTSCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSCCCCHHH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCCEeCHHH
Confidence 4799999 77877789999999999999 999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-----Cc-ccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCeE
Q 015333 262 LIEEIASS-----GK-LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNV 334 (409)
Q Consensus 262 LIekI~~~-----~k-L~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~i 334 (409)
| ++|+++ ++ .+||+||||++||+.|++ ||++||||||||+|+.| +.||.++|+++++| ++||+++++|+
T Consensus 85 L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~g--t~dv~~~i~~~k~~-v~~r~~k~~~i 160 (212)
T 2zkr_5 85 L-EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDP--DDDVVEVIERMKNT-VQLRSGERRTF 160 (212)
T ss_dssp H-HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCS--SSCCHHHHHHHHTE-EECCCSSSSEE
T ss_pred H-HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCC--CcCHHHHHHHHHcc-eEEEecCCCEE
Confidence 9 999742 55 599999999999999999 99999999999999999 69999999999977 99999999999
Q ss_pred EEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEe
Q 015333 335 HAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 393 (409)
Q Consensus 335 ~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~ 393 (409)
|++||+++|++|||+|||.+++++|.+++|.+ |+||+++||||||||+++|+
T Consensus 161 ~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~-------~~~ik~v~lksTmgp~i~i~ 212 (212)
T 2zkr_5 161 HTRVGAEDMSAENIADNIDVILRRLHADLEKG-------PLNIDTVYVKTTMGPAMEVA 212 (212)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHTTTCCC-------TTTEEEEEEEESSSCCEEC-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHhCccc-------cccEEEEEEECCCCCCEECC
Confidence 99999999999999999999999999998876 88999999999999999974
No 7
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=1.5e-53 Score=402.60 Aligned_cols=199 Identities=21% Similarity=0.333 Sum_probs=185.7
Q ss_pred HHHHHH-HHHHHcccCCCccEEEEEEe-CCCCCCCC-CceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeeccHh
Q 015333 185 LMDAIK-QVKANAKATFDETVEAHVRL-AIPPRKTE-LIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLE 261 (409)
Q Consensus 185 l~EAI~-~lK~~ak~kF~ETVeL~V~L-~id~kK~~-~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGAd~VGgee 261 (409)
|.|||+ +++..+.++|+|||||+|+| ++|++ .+ +++||+|.|||++++..+|||||+|+++++|+++||++||++|
T Consensus 6 l~eAv~~llk~~~~~kf~etVel~i~LK~~dp~-~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~~vg~~~ 84 (219)
T 1i2a_A 6 LLQAVKEARELAKPRNFTQSFEFIATLKEIDMR-KPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEE 84 (219)
T ss_dssp HHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTT-SGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCEEECHHH
T ss_pred HHHHHHHHHHhcccCCCCceEEEEEEecccCCc-ccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCCEEcHHH
Confidence 689999 66766789999999999999 99999 57 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-----Cc-ccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCeE
Q 015333 262 LIEEIASS-----GK-LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNV 334 (409)
Q Consensus 262 LIekI~~~-----~k-L~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~i 334 (409)
| ++|.++ ++ .+||+||||++||+.|++ ||++||||||||+|+.| +.||.++|+++++| +.||+++++|+
T Consensus 85 L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~g--t~dv~~~v~~~k~~-v~~r~~k~~~i 160 (219)
T 1i2a_A 85 I-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPA--NANIKPLVERLKKT-VVINTRDKPYF 160 (219)
T ss_dssp H-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECT--TCCCHHHHHHHHTE-EEEECTTSSEE
T ss_pred H-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCC--CccHHHHHHHHhcc-eEEEecCCCEE
Confidence 9 999752 34 489999999999999999 99999999999999999 68999999999976 99999999999
Q ss_pred EEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEehh
Q 015333 335 HAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQ 395 (409)
Q Consensus 335 ~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~ 395 (409)
|++||+++|++|||+|||.+++++|.+.+|.+ |+||+++||||||||+++||.+
T Consensus 161 ~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~-------~~~ik~v~lksTmgp~i~iy~~ 214 (219)
T 1i2a_A 161 QVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKG-------LYHIKDAYVKLTMGPAVKVKKE 214 (219)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSTTG-------GGGEEEEEEEETTSCCEECC--
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHhCCcc-------ccceEEEEEECCCCCCEEeEhh
Confidence 99999999999999999999999999998876 8899999999999999999865
No 8
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=1.3e-51 Score=389.10 Aligned_cols=196 Identities=23% Similarity=0.305 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHc---ccCCCccEEEEEEe-CCCCCCCC-CceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCCC-eec
Q 015333 185 LMDAIKQVKANA---KATFDETVEAHVRL-AIPPRKTE-LIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGAD-IVG 258 (409)
Q Consensus 185 l~EAI~~lK~~a---k~kF~ETVeL~V~L-~id~kK~~-~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGAd-~VG 258 (409)
+.+||+.|++++ +++|+||||++|+| ++|++ .+ +++||+|.|||++++..+|||||+|+++++|+++||+ +||
T Consensus 8 l~~Av~~ll~~~~~~~~kf~etvel~i~LK~~dp~-~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGad~~vg 86 (217)
T 1mzp_A 8 LIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMK-KGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT 86 (217)
T ss_dssp HHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGG-GTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHHhhccccccCCCccEEEEEEecCCCCc-ccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCCCeeeC
Confidence 689999998753 68999999999999 99999 57 8999999999999999999999999999999999998 999
Q ss_pred cHhHHHHHHhc-----Cc-ccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCC
Q 015333 259 GLELIEEIASS-----GK-LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNT 331 (409)
Q Consensus 259 geeLIekI~~~-----~k-L~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~ 331 (409)
++|| ++|+++ ++ .+||+||||++||+.|++ ||++||||||||+|+.| +.||.++|+++++| ++|+++++
T Consensus 87 ~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~g--t~dv~~~v~~~k~~-v~~r~~k~ 162 (217)
T 1mzp_A 87 REEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPN--TADISEYINRFKRS-VLVKTKDQ 162 (217)
T ss_dssp HHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCS--SSCCHHHHHHHHTE-EEEECSSS
T ss_pred HHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCC--CccHHHHHHHHhcc-eEEEecCC
Confidence 9999 999742 34 499999999999999999 99999999999999999 69999999999976 99999999
Q ss_pred CeEEEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEe
Q 015333 332 SNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 393 (409)
Q Consensus 332 g~i~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~ 393 (409)
+|+|++||+++|++|||+|||.+++++|.+.+|. |+||+++||||||||+++|+
T Consensus 163 ~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~--------~~~ik~v~lksTmgp~i~i~ 216 (217)
T 1mzp_A 163 PQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV--------ETNLRNIYVKTTMGKAVKVK 216 (217)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC--------TTTEEEEEEEETTSCCEECC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc--------chheEEEEEECCCCCCeeCC
Confidence 9999999999999999999999999999998763 46999999999999999975
No 9
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=1.2e-52 Score=395.51 Aligned_cols=199 Identities=24% Similarity=0.350 Sum_probs=185.2
Q ss_pred CHHHHHHHHHHHc---ccCCCccEEEEEEe-CCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeecc
Q 015333 184 DLMDAIKQVKANA---KATFDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGG 259 (409)
Q Consensus 184 ~l~EAI~~lK~~a---k~kF~ETVeL~V~L-~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGAd~VGg 259 (409)
.+.|||+.+++.+ +++|+|||||+|+| ++|+++ ++++||+|.|||+++++.+|||||+++.+++|+++||++||+
T Consensus 8 ~l~eav~~~~~~~~~~~~kF~etvel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~aGa~~vg~ 86 (216)
T 3iz5_A 8 AVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKMGLDYMDV 86 (216)
T ss_dssp SSCEECTTTSSSSTTHHHHCCCSSCCEEEEEEECCCC-SSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHhccccccCCCccEEEEEEecccCccc-ccccceeecCCCCCCCCcEEEEEcChHhHHHHHhccCCEeCH
Confidence 3678999998877 78999999999999 899986 999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhc---Cc--ccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCe
Q 015333 260 LELIEEIASS---GK--LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSN 333 (409)
Q Consensus 260 eeLIekI~~~---~k--L~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~ 333 (409)
+||+++|+.. ++ .+||+||||+++|+.|++ ||+.|||+||||+++.+ +.|+.++|++++ +++.|++++++|
T Consensus 87 ~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~--t~dv~~~v~~~k-~~v~~r~~k~~~ 163 (216)
T 3iz5_A 87 ESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSH--QESLEAKVNETK-ATVKFQLKKVLC 163 (216)
T ss_dssp ECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSC--HHHHHHHHHHTB-CCEEECTTSEEE
T ss_pred HHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCC--cccHHHHHHHHH-hhhheeCCCccE
Confidence 9999999751 23 399999999999999999 89999999999999964 699999999998 589999999999
Q ss_pred EEEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEe
Q 015333 334 VHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 393 (409)
Q Consensus 334 i~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~ 393 (409)
+|++||+++|++|||+|||.+++++|.+.+|.+ |+||+++||||||||+++||
T Consensus 164 i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~~-------~~~Iksv~iksTmgp~i~iy 216 (216)
T 3iz5_A 164 MGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKKN-------WQNVRCLYVKSTMGKRVRVF 216 (216)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHCCSSCC-------SCSCSEEEECCSSCCCEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHhccCC-------CceEEEEEEECCCCCCEecC
Confidence 999999999999999999999999999988743 88999999999999999997
No 10
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=3.5e-48 Score=358.81 Aligned_cols=183 Identities=21% Similarity=0.366 Sum_probs=167.5
Q ss_pred cEEEEEEeCCCCCCCCCceeeeEEcCCCCCCCc-EEEEEcCc-hhHHHHHHcCCCeeccHhHHHHHHhcCcccccEEEEc
Q 015333 203 TVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAV-RVAFFAEG-ADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFST 280 (409)
Q Consensus 203 TVeL~V~L~id~kK~~~~IRG~V~LPH~~~k~~-kIcVFadd-~~aeeAkeaGAd~VGgeeLIekI~~~~kL~fD~fLAt 280 (409)
.|+|++.|.- . |...++||+|.|||++++.. +|||||++ +++++|+++||++||++|||++|+ ++|++||+||||
T Consensus 2 ~ieL~m~l~~-~-r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~-~~~~~fD~~iAt 78 (189)
T 2ftc_A 2 DLTLDMALGK-K-KNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIW-DDEIVADFYVAV 78 (189)
T ss_pred eEEEEEEecC-C-ccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHH-cCCccCCEEEEC
Confidence 3788888843 3 44667799999999988765 99999999 578999999999999999999998 589999999999
Q ss_pred CcchhhHHhhhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCC--eEEEEecccCCChHHHHHhHHHHHHH
Q 015333 281 RQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTS--NVHAGLGKVSLKEELLRENVGAFVNA 358 (409)
Q Consensus 281 pd~mp~L~kLGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g--~i~V~IGklsms~eeL~ENI~Avi~a 358 (409)
|+||+.|++||++||+ +||+|+.|||+.||.++|+++++|. +||+++.+ |+|++||+++|++|||+|||.+++++
T Consensus 79 p~~m~~l~~l~~~Lg~--KmP~pk~gTvt~dv~~~v~~~k~g~-~~r~~k~~~~~i~v~VG~~~~~~e~L~eNi~a~i~~ 155 (189)
T 2ftc_A 79 PEIMPELNRLRKKLNK--KYPKLSRNSIGRDIPKMLELFKNGH-EIKVDEERENFLQTKIATLDMSSDQIAANLQAVINE 155 (189)
T ss_pred HHHHHHHHHhhccccC--CCCcccCCCccccHHHHHHHHhcce-EEEeccCCCcEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999999997 5999999999999999999999875 99999999 99999999999999999999999999
Q ss_pred HHHhCCCCCCCCcccccceeEEEEecCCCCceEEehhhh
Q 015333 359 LLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSL 397 (409)
Q Consensus 359 L~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~~~ 397 (409)
|.+++|.+. | +||+++|||||||||++|+.++|
T Consensus 156 l~~~~p~~~-g-----~~ik~v~lssTmgp~i~i~~~~l 188 (189)
T 2ftc_A 156 VCRHRPLNL-G-----PFVVRAFLRSSTSEGLLLKIDPL 188 (189)
T ss_pred HHHhCchhc-C-----ccEEEEEEECCCCCCEEEehhhc
Confidence 999998774 3 59999999999999999998875
No 11
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=2e-52 Score=394.23 Aligned_cols=199 Identities=21% Similarity=0.365 Sum_probs=184.3
Q ss_pred CHHHHHHHHHHHc----ccCCCccEEEEEEe-CCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCeec
Q 015333 184 DLMDAIKQVKANA----KATFDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVG 258 (409)
Q Consensus 184 ~l~EAI~~lK~~a----k~kF~ETVeL~V~L-~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGAd~VG 258 (409)
.+.+||+.+++.+ +++|+|||||+|+| ++|+++ ++++||+|.|||+++++.+|||||+|+.+++|+++||++||
T Consensus 8 ~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~k-d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~aGa~~vg 86 (217)
T 3o58_A 8 QVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMS 86 (217)
T ss_dssp THHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSS-SSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTTTCCCCC
T ss_pred HHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCC-CCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHcCCCEeC
Confidence 3899999988763 68999999999999 999998 99999999999999999999999999999999999999999
Q ss_pred cHhHHHHHHhc----Cc-ccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCC
Q 015333 259 GLELIEEIASS----GK-LDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTS 332 (409)
Q Consensus 259 geeLIekI~~~----~k-L~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g 332 (409)
++||+++|+.. ++ .+||+||||++||+.|++ ||+.|||+||||+|+ |++.|+.++|++++ +++.|++++++
T Consensus 87 ~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~--~vt~dv~~~v~~~k-~~v~~r~~k~~ 163 (217)
T 3o58_A 87 VDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPV--SHNDDLYGKVTDVR-STIKFQLKKVL 163 (217)
T ss_dssp STTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCS--CTTTCSSSGGGGTT-SCCSCCCCSSS
T ss_pred HHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCc--CCchhHHHHHHHHh-ceEEEEeCCCC
Confidence 99999988631 12 499999999999999999 999999999999999 58899999999998 58999999999
Q ss_pred eEEEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEe
Q 015333 333 NVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVS 393 (409)
Q Consensus 333 ~i~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~ 393 (409)
|+|++||+++|++|||+|||.+++++|.+.+|.+ |+||+++||||||||+++||
T Consensus 164 ~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk~-------~~~iksi~lksTmgp~i~iy 217 (217)
T 3o58_A 164 CLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKN-------WQNVGSLVVKSSMGPAFRLY 217 (217)
T ss_dssp CCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSSC-------SCCCSCCCCCSSSSCSCCC-
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhcccC-------CceEEEEEEECCCCCCEecC
Confidence 9999999999999999999999999999987743 89999999999999999986
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.97 E-value=2.3e-31 Score=235.33 Aligned_cols=125 Identities=42% Similarity=0.685 Sum_probs=118.0
Q ss_pred ccCCCCCccCHHHHHHHHHHHcccCCCccEEEEEEeCCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCC
Q 015333 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGA 254 (409)
Q Consensus 175 ~k~~~~~~~~l~EAI~~lK~~ak~kF~ETVeL~V~L~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGA 254 (409)
.+.+....|++.|||+++++.+.++|+||||++|+||+|++|.|++|||+|.|||+
T Consensus 12 ~kv~~~~~y~~~eAi~~~k~~~~~kF~EtVel~i~L~vDprk~dq~vrgtV~LP~g------------------------ 67 (137)
T 2ov7_A 12 EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG------------------------ 67 (137)
T ss_dssp TTSCTTCCBCHHHHHHHHHHTCCSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS------------------------
T ss_pred HhcCcccccCHHHHHHHHHhcccCCCCccEEEEEEeCCCCccccceeeEEEEcCCC------------------------
Confidence 45667789999999999998889999999999999999999999999999999997
Q ss_pred CeeccHhHHHHHHhcCcccccEEEEcCcchhhHHhhhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCeE
Q 015333 255 DIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNV 334 (409)
Q Consensus 255 d~VGgeeLIekI~~~~kL~fD~fLAtpd~mp~L~kLGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~i 334 (409)
|+++||+++.||+
T Consensus 68 -------------------------------------------------------------------g~v~fr~dk~~~i 80 (137)
T 2ov7_A 68 -------------------------------------------------------------------GRIEFRNDKTGAI 80 (137)
T ss_dssp -------------------------------------------------------------------CEEEEECCTTSEE
T ss_pred -------------------------------------------------------------------CeEEEEECCCCEE
Confidence 8899999999999
Q ss_pred EEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEehh
Q 015333 335 HAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQ 395 (409)
Q Consensus 335 ~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~ 395 (409)
|++||+++|++|+|.|||.+++++|.+.+|.+.||. ||+++|||||||||++|+..
T Consensus 81 h~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~-----~ik~v~issTMGp~i~id~~ 136 (137)
T 2ov7_A 81 HAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGT-----FLRSVYVTTTMGPSVRINPH 136 (137)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSC-----SEEEEEEEETTSCCEEBCTT
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCc-----eEEEEEEECCCCCCEEecCC
Confidence 999999999999999999999999999999987764 99999999999999999864
No 13
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=34.57 E-value=19 Score=33.31 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.6
Q ss_pred HhhhhhhhcCCCCCCCCCCCccc
Q 015333 288 FKISKILNQHGLMPNPKQGTVTN 310 (409)
Q Consensus 288 ~kLGriLGpKGkMP~pK~GTVt~ 310 (409)
+.||++||| ++||+.+.+++..
T Consensus 117 ~~l~riLG~-~l~p~gk~P~p~~ 138 (216)
T 3iz5_A 117 KQIPRLLGP-GLNKAGKFPTLVS 138 (216)
T ss_dssp HHHHHHHTT-TCSCCTTTTCBCS
T ss_pred HHHHHHhcc-cccccCCcCCCcC
Confidence 459999999 8999999988654
No 14
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=24.76 E-value=25 Score=32.11 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.4
Q ss_pred cEEEEEcCchhHHHHHHcCCCeeccH
Q 015333 235 VRVAFFAEGADAEEARAAGADIVGGL 260 (409)
Q Consensus 235 ~kIcVFadd~~aeeAkeaGAd~VGge 260 (409)
.|||=++.-++++.|.++|||++|.-
T Consensus 4 vKICGit~~eda~~a~~~GaD~iGfi 29 (205)
T 1nsj_A 4 VKICGITNLEDALFSVESGADAVGFV 29 (205)
T ss_dssp EEECCCCSHHHHHHHHHHTCSEEEEE
T ss_pred EEECCCCcHHHHHHHHHcCCCEEEEE
Confidence 68999999999999999999999864
No 15
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=24.38 E-value=25 Score=32.05 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=23.4
Q ss_pred cEEEEEcCchhHHHHHHcCCCeeccH
Q 015333 235 VRVAFFAEGADAEEARAAGADIVGGL 260 (409)
Q Consensus 235 ~kIcVFadd~~aeeAkeaGAd~VGge 260 (409)
.|||=++.-++++.|.++|||++|.-
T Consensus 3 vKICGit~~eda~~a~~~GaD~iGfi 28 (203)
T 1v5x_A 3 VKICGITRLEDALLAEALGAFALGFV 28 (203)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEEEEE
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEEE
Confidence 58999999999999999999999964
Done!