RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 015333
         (409 letters)



>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
           [TaxId: 274]}
          Length = 224

 Score =  170 bits (433), Expect = 9e-52
 Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
           +K +   +  + +A   VK  A A FDETVE H +L I PR+++  VRGT++LPHG  K 
Sbjct: 8   EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQ 67

Query: 235 VRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK-ISKI 293
           VRV   A+G   +EA  AGAD VGG E I +    G +D +   +T   M  +   + +I
Sbjct: 68  VRVLAIAKGEKIKEAEEAGADYVGG-EEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRI 126

Query: 294 LNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVG 353
           L   GL+PNPK GTV  ++   ++E K G I+F+ D T  +HA +GK     E L +N+ 
Sbjct: 127 LGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIR 186

Query: 354 AFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQS 396
           AF+ AL   KP G K T     ++ S ++ +TMGPS  ++  S
Sbjct: 187 AFIRALEAHKPEGAKGT-----FLRSVYVTTTMGPSVRINPHS 224


>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
           acidocaldarius [TaxId: 2285]}
          Length = 217

 Score =  124 bits (311), Expect = 4e-34
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 21/224 (9%)

Query: 177 KESRPVLDLMDAIKQVKANAKATFDETVEAHVRLA-IPPRKTELIVRGTMNLPHGDKKAV 235
           KES  +++ +      + N K  F ++VE  +    I  +K +L +R  + LP    KA 
Sbjct: 5   KES--LIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAK 62

Query: 236 RVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCF-------STRQFMPRLF 288
           RV         E A+ A   +V   E ++++    +   +          +         
Sbjct: 63  RVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGR 122

Query: 289 KISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELL 348
            +   L   G  P P     T D++  +   K+  +  K  +   V   +G   +K E L
Sbjct: 123 ILGPALGPRGKFPTPL--PNTADISEYINRFKRSVL-VKTKDQPQVQVFIGTEDMKPEDL 179

Query: 349 RENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV 392
            EN  A +NA        ++  +K    + + ++ +TMG +  V
Sbjct: 180 AENAIAVLNA--------IENKAKVETNLRNIYVKTTMGKAVKV 215


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score =  119 bits (298), Expect = 3e-32
 Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 18/216 (8%)

Query: 185 LMDAIKQVKANAKAT-FDETVEAHVRL-AIPPRKTELIVRGTMNLPHGDKKAVRVAFFAE 242
           L+ A+K+ +  AK   F ++ E    L  I  RK E  ++  + LPHG  K  ++A    
Sbjct: 6   LLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGT 65

Query: 243 GADAEEARAAGADIVGGLELIEEIA-----SSGKLDVEKCFSTRQFMPRLFK-ISKILNQ 296
           G  A++A   G  ++   E+ E               +   +    MP + + +  IL  
Sbjct: 66  GDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGP 125

Query: 297 HGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFV 356
            G MP P       ++   V+  K+  +    D        +G   + +E + +N+ A +
Sbjct: 126 RGKMPKPV--PANANIKPLVERLKKTVVINTRDKPYF-QVLVGNEKMTDEQIVDNIEAVL 182

Query: 357 NALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV 392
           N +      GL        ++   ++  TMGP+  V
Sbjct: 183 NVVAKKYEKGLY-------HIKDAYVKLTMGPAVKV 211


>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1
           {Leishmania major [TaxId: 5664]}
          Length = 131

 Score = 30.9 bits (70), Expect = 0.11
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 195 NAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAV 235
             K    E  E    + + P +TE+ + G +N       A+
Sbjct: 76  KTKLEQQENGEWVASVVVYPCETEMFIEGRVNGFKSKMDAL 116


>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica
           charantia) [TaxId: 3673]}
          Length = 190

 Score = 27.3 bits (60), Expect = 2.3
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 268 SSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGH--IK 325
           S    +    F     M   + I   L  H   PN +  +    +   ++        ++
Sbjct: 92  SESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSR-QAIKGFLKAKFGKFPGLR 150

Query: 326 FKMDNTSNV 334
            + D  + V
Sbjct: 151 CRTDPQTKV 159


>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score = 25.1 bits (55), Expect = 5.9
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 19/60 (31%)

Query: 190 KQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA-VRVAFFAEGADAEE 248
            +V    +  +D TVE               V  T N   G+KKA VR    +E  DA+E
Sbjct: 35  GEVADAVEEQYDVTVEQ--------------VN-TQNTMDGEKKAVVR---LSEDDDAQE 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,416,528
Number of extensions: 65749
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 7
Length of query: 409
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,213,086
Effective search space: 390613692
Effective search space used: 390613692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.7 bits)