Query 015334
Match_columns 409
No_of_seqs 309 out of 822
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 99.9 5.6E-28 1.2E-32 203.5 6.3 96 296-391 1-103 (104)
2 PF04749 PLAC8: PLAC8 family; 99.9 7.3E-24 1.6E-28 177.7 5.0 93 298-390 1-106 (106)
3 PF05659 RPW8: Arabidopsis bro 98.4 7.9E-06 1.7E-10 73.1 14.0 124 19-143 13-137 (147)
4 COG0497 RecN ATPase involved i 82.2 66 0.0014 35.0 16.4 118 36-156 174-323 (557)
5 TIGR00634 recN DNA repair prot 65.5 2.1E+02 0.0045 31.1 19.6 57 36-94 178-234 (563)
6 PRK10787 DNA-binding ATP-depen 60.3 1.9E+02 0.004 33.0 14.2 75 73-151 155-230 (784)
7 TIGR00763 lon ATP-dependent pr 58.0 1.9E+02 0.004 32.8 13.8 56 84-140 163-220 (775)
8 PF06760 DUF1221: Protein of u 48.5 1.7E+02 0.0038 27.5 9.5 61 35-95 4-70 (217)
9 KOG4713 Cyclin-dependent kinas 48.2 27 0.00059 32.2 4.2 44 49-92 137-180 (189)
10 COG0466 Lon ATP-dependent Lon 47.1 4.8E+02 0.01 29.6 14.3 116 95-227 179-301 (782)
11 PF12252 SidE: Dot/Icm substra 46.8 1.4E+02 0.003 35.1 10.1 101 119-226 1050-1170(1439)
12 TIGR00996 Mtu_fam_mce virulenc 45.5 3E+02 0.0064 26.8 12.2 60 67-127 229-288 (291)
13 PF06160 EzrA: Septation ring 43.2 4.7E+02 0.01 28.5 16.8 48 100-147 189-236 (560)
14 KOG0994 Extracellular matrix g 40.2 7.4E+02 0.016 29.9 14.5 55 40-94 1612-1683(1758)
15 KOG3156 Uncharacterized membra 38.5 91 0.002 29.8 6.2 29 192-227 179-207 (220)
16 PHA02687 ORF061 late transcrip 36.8 1.2E+02 0.0026 28.4 6.5 46 39-90 168-213 (231)
17 PF05835 Synaphin: Synaphin pr 36.1 20 0.00043 31.9 1.4 14 359-372 63-76 (139)
18 PF09806 CDK2AP: Cyclin-depend 30.3 41 0.00089 31.6 2.5 43 49-91 141-183 (193)
19 PF03286 Pox_Ag35: Pox virus A 29.0 1.4E+02 0.003 28.2 5.8 44 39-88 139-182 (200)
20 PF14949 ARF7EP_C: ARF7 effect 27.6 25 0.00055 29.7 0.6 22 300-324 60-81 (103)
21 cd08329 CARD_BIRC2_BIRC3 Caspa 27.5 2.3E+02 0.005 23.2 6.3 57 35-92 8-64 (94)
22 PF07851 TMPIT: TMPIT-like pro 26.5 3.4E+02 0.0073 27.7 8.4 56 35-90 31-86 (330)
23 KOG0994 Extracellular matrix g 26.2 8.6E+02 0.019 29.4 12.1 33 102-134 1505-1537(1758)
24 PHA03089 late transcription fa 25.2 2.2E+02 0.0048 26.6 6.2 67 10-89 109-175 (191)
25 PF07165 DUF1397: Protein of u 25.0 5.9E+02 0.013 24.1 10.7 98 20-124 49-151 (213)
26 PRK14161 heat shock protein Gr 24.7 5.3E+02 0.011 23.8 8.8 47 101-147 66-112 (178)
27 cd08324 CARD_NOD1_CARD4 Caspas 23.6 3.7E+02 0.0081 22.0 6.5 74 39-121 4-77 (85)
28 cd07639 BAR_ACAP1 The Bin/Amph 22.7 6.5E+02 0.014 23.7 14.1 103 20-123 10-123 (200)
29 PF14833 NAD_binding_11: NAD-b 22.3 4.5E+02 0.0097 21.9 7.4 70 3-86 17-87 (122)
30 COG3937 Uncharacterized conser 21.2 4.4E+02 0.0096 22.5 6.8 77 126-206 13-102 (108)
31 cd08330 CARD_ASC_NALP1 Caspase 21.0 3.1E+02 0.0067 21.8 5.7 53 39-92 4-56 (82)
32 COG5185 HEC1 Protein involved 20.6 1.1E+03 0.024 25.5 13.3 30 171-204 376-406 (622)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.94 E-value=5.6e-28 Score=203.52 Aligned_cols=96 Identities=30% Similarity=0.574 Sum_probs=84.2
Q ss_pred CCCccCcccccCCcccceeecccchhhhhhhHhhhCCCCCCchhHhHHHHHHHHhhh-hhchhhHHHHHHHHHcCCCC--
Q 015334 296 EEWHTDLLGCCSEPLLCMKTFFYPCGTFSKIATVATSRHMSSAEACNELMAYSLILS-CCCYTCCIRRKLRKTLNIAV-- 372 (409)
Q Consensus 296 ~~W~~GL~dC~~D~~~C~~t~~CPC~~~g~~a~~~~~g~~~c~~~~~~~~~~~~~~~-~~~~~~~~R~~iR~ky~I~G-- 372 (409)
++|++||||||+|+++|++++||||++||+|+++++.+..+|...+..+++++.+.+ .|+|.+.+|++||+||||+|
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~R~~~R~ry~i~gs~ 80 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCGCYTCFIRIKLREKYGIQGAP 80 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 479999999999999999999999999999999999887888877766666655543 47899999999999999999
Q ss_pred CCc----ccChhhHHHhhhhhhh
Q 015334 373 FSP----CHCKIISLCHQYPINL 391 (409)
Q Consensus 373 ~~~----CcC~~Cal~Q~~RE~~ 391 (409)
+.| |||+||++|||+||++
T Consensus 81 ~~D~~~~~~C~~C~lcQ~~RElk 103 (104)
T TIGR01571 81 CDDCLTHLFCCFCALCQEHRELK 103 (104)
T ss_pred cccchHHHHhhhHHHHHHHHHHh
Confidence 334 4999999999999986
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.89 E-value=7.3e-24 Score=177.72 Aligned_cols=93 Identities=25% Similarity=0.465 Sum_probs=73.9
Q ss_pred CccCcccccCCcccceeecccchhhhhhhHhhhCCCC-------CCchhHhHHHHHHHHhhhhhchhhHHHHHHHHHcCC
Q 015334 298 WHTDLLGCCSEPLLCMKTFFYPCGTFSKIATVATSRH-------MSSAEACNELMAYSLILSCCCYTCCIRRKLRKTLNI 370 (409)
Q Consensus 298 W~~GL~dC~~D~~~C~~t~~CPC~~~g~~a~~~~~g~-------~~c~~~~~~~~~~~~~~~~~~~~~~~R~~iR~ky~I 370 (409)
|++||||||+|+++|++++||||+++|+++++++++. .+|...+..+.+..+++..|+|.+.+|++||+||||
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~~~~~~~~R~~iR~ry~I 80 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAACLGLGWCYGCSLRQQIRERYGI 80 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHhCC
Confidence 9999999999999999999999999999999998765 334333322222221122456889999999999999
Q ss_pred CC--CCc----ccChhhHHHhhhhhh
Q 015334 371 AV--FSP----CHCKIISLCHQYPIN 390 (409)
Q Consensus 371 ~G--~~~----CcC~~Cal~Q~~RE~ 390 (409)
+| +.| |||+||+++||+||+
T Consensus 81 ~g~~~~D~~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 81 QGSCCEDCCCSCCCPPCALCQEAREL 106 (106)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHhhC
Confidence 99 444 499999999999995
No 3
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=98.40 E-value=7.9e-06 Score=73.14 Aligned_cols=124 Identities=14% Similarity=0.240 Sum_probs=99.6
Q ss_pred hcHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhccchHHH
Q 015334 19 FDAVRLIGMIVKAATTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQDRSYLY 98 (409)
Q Consensus 19 ~d~~~la~~I~~aa~~a~~~Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~Skly 98 (409)
+-+-.|...|..+.+.+...|..+.+|..-++.|.|+++|++..+...+..-..-+++|...|++|+.||+.|+..+ .|
T Consensus 13 ~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~ 91 (147)
T PF05659_consen 13 AVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RW 91 (147)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HH
Confidence 33445567778888888999999999999999999999999876544444447789999999999999999999876 55
Q ss_pred HHhhchhhhhhHHHHHHHHHHHhcc-cCcchhhhhhHHHHHHHHHH
Q 015334 99 LLAMGWNIVYQFRKAQTEIDRYLKI-VPLITLVDNARVRERLEDIE 143 (409)
Q Consensus 99 lll~~~~v~~qF~~V~~~I~~~L~~-lPl~~l~is~ev~Eqvelv~ 143 (409)
-++.-.....+..++..+|.+.++. +|+......-+++..+..+.
T Consensus 92 n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~ 137 (147)
T PF05659_consen 92 NLYKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMN 137 (147)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999984 78776655555544444443
No 4
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.20 E-value=66 Score=35.04 Aligned_cols=118 Identities=25% Similarity=0.241 Sum_probs=65.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhccc--------------hHHHHHh
Q 015334 36 RMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQDR--------------SYLYLLA 101 (409)
Q Consensus 36 ~~~Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~--------------Sklylll 101 (409)
...+++-+++++++++|.-=++||...+ ..|.-...|.+-+.-|..+..|.+.+++. +.++..+
T Consensus 174 ~~~~~~~~e~~~~~d~L~fq~~Ele~~~--l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~ 251 (557)
T COG0497 174 EDLQEKERERAQRADLLQFQLEELEELN--LQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRAL 251 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Confidence 4566777899999999999999997543 23333444444444444333333333211 1222222
Q ss_pred hc------------------hhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhhhhcCChhhH
Q 015334 102 MG------------------WNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQREYTLDEEDQ 156 (409)
Q Consensus 102 ~~------------------~~v~~qF~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r~~~~d~~d~ 156 (409)
+. +....+..++..+|.++++.++++...+ ++|-+++..++.=.|||..+++|.
T Consensus 252 ~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L-~~ve~Rl~~L~~l~RKY~~~~~~l 323 (557)
T COG0497 252 EALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRL-EEVEERLFALKSLARKYGVTIEDL 323 (557)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHHHHHhCCCHHHH
Confidence 11 1133445566666667777777665444 456666666665555777666554
No 5
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.47 E-value=2.1e+02 Score=31.09 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=38.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhccc
Q 015334 36 RMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQDR 94 (409)
Q Consensus 36 ~~~Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~ 94 (409)
...+++-.++.++++.+.--++||+..+ ..|.-...|+.-+..|..+..+.+.++..
T Consensus 178 ~~l~~~~~~~~~eld~L~~ql~ELe~~~--l~~~E~e~L~~e~~~L~n~e~i~~~~~~~ 234 (563)
T TIGR00634 178 KDRQQKEQELAQRLDFLQFQLEELEEAD--LQPGEDEALEAEQQRLSNLEKLRELSQNA 234 (563)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhCC--cCCCcHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3445556778889999999999998644 34555566666666666666666666543
No 6
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=60.28 E-value=1.9e+02 Score=33.01 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc-cchHHHHHhhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhhhhcC
Q 015334 73 PLEQLEDALRRSYLLVNSCQ-DRSYLYLLAMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQREYTL 151 (409)
Q Consensus 73 ~L~~L~~aL~~Ak~Lv~~C~-~~Sklylll~~~~v~~qF~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r~~~~ 151 (409)
.+..+.+.-.-|..+..... +-..-+.+++...+..+++.+..-|.+-+..+-+. ..+...|+++++ +++|+|.+
T Consensus 155 ~~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~-~~I~~~v~~~~~---k~q~e~~l 230 (784)
T PRK10787 155 SLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVE-KRIRNRVKKQME---KSQREYYL 230 (784)
T ss_pred hhhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh---hhhhhhcc
Confidence 33333333333444444444 34555788899999999999999888877766533 356667776664 33444444
No 7
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=58.05 E-value=1.9e+02 Score=32.82 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=37.1
Q ss_pred HHHHHHHhc-c-chHHHHHhhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHH
Q 015334 84 SYLLVNSCQ-D-RSYLYLLAMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLE 140 (409)
Q Consensus 84 Ak~Lv~~C~-~-~Sklylll~~~~v~~qF~~V~~~I~~~L~~lPl~~l~is~ev~Eqve 140 (409)
|..+..... . -..-+.+++...+..+++.+..-|.+-+..+-+. ..+...|+++++
T Consensus 163 ad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~-~~I~~~v~~~~~ 220 (775)
T TIGR00763 163 ADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQ-NKITKKVEEKME 220 (775)
T ss_pred HHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 444444444 3 4556788888889999999988888877665433 345566666654
No 8
>PF06760 DUF1221: Protein of unknown function (DUF1221); InterPro: IPR010632 This is a group of plant proteins, most of which are hypothetical and of unknown function. All members contain the IPR000719 from INTERPRO domain, suggesting that they may possess kinase activity.
Probab=48.55 E-value=1.7e+02 Score=27.53 Aligned_cols=61 Identities=20% Similarity=0.417 Sum_probs=44.0
Q ss_pred hHHhHHHHHHHHHHHHH-HHHHHHHHhhh-----ccCCChhhhhHHHHHHHHHHHHHHHHHHhccch
Q 015334 35 ARMHKKNCRQFAQHLKL-IGNLLEQLKIS-----ELKKYPETREPLEQLEDALRRSYLLVNSCQDRS 95 (409)
Q Consensus 35 a~~~Kk~C~~Larrv~l-L~~lLeeL~~~-----~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~S 95 (409)
.+.|+|+|.-|+.-..+ ...+-+|++.. .-..-.....+|.+|+.+++.+--.|..|=+..
T Consensus 4 iqIN~RQC~LL~d~f~~A~~~va~eir~nLrfeEk~tKWr~LE~PLREl~rvfregE~YvR~CLd~k 70 (217)
T PF06760_consen 4 IQINPRQCCLLADIFALAFDTVAEEIRQNLRFEEKNTKWRPLEQPLRELHRVFREGEGYVRHCLDPK 70 (217)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhchHhhcCcccccchhHHHHHHHHhhhHHHHHHccCch
Confidence 46899999988875544 44456666532 111233567899999999999999999998653
No 9
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=48.19 E-value=27 Score=32.17 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhc
Q 015334 49 LKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQ 92 (409)
Q Consensus 49 v~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~ 92 (409)
-.-|+.++||++..-.+-....+.+.++|+.-+..|+.||+.|.
T Consensus 137 Y~~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRecl 180 (189)
T KOG4713|consen 137 YADLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVRECL 180 (189)
T ss_pred HHHHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHHH
Confidence 34566777888753334444567889999999999999999995
No 10
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=47.07 E-value=4.8e+02 Score=29.63 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=63.4
Q ss_pred hHHHHHhhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhhhhcCChhhHHHHHHHhhcCCCC---cc
Q 015334 95 SYLYLLAMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQREYTLDEEDQKMQDAILRREPSK---HE 171 (409)
Q Consensus 95 Sklylll~~~~v~~qF~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r~~~~d~~d~~l~~~il~~e~~~---~d 171 (409)
.-.+-+++.-++..++..+-.-+..-++.+-+. ..+..+|++|++ +++|+|.+-..=..+++.+ ..+. .+
T Consensus 179 ~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~e-k~I~~kVk~~me---K~QREyyL~EQlKaIqkEL---G~~~d~~~e 251 (782)
T COG0466 179 EEKQEILETLDVKERLEKLLDLLEKEIDLLQLE-KRIRKKVKEQME---KSQREYYLREQLKAIQKEL---GEDDDDKDE 251 (782)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh---CCCccchhH
Confidence 344566666666666666666555555433222 245666776664 4456666655555566655 2111 23
Q ss_pred HHHHHHHhhcCCCCcccchH----HHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHh
Q 015334 172 TMVLKKTLSTSYPKMGFNEV----LQKENEKLQLELQRSQTQMDVSQCEVIQRLIDVTEA 227 (409)
Q Consensus 172 ~~~l~r~~~~~~~~L~l~s~----l~~E~~~L~~el~~~~~~~d~~~~~~i~~Li~ll~~ 227 (409)
-..++.-+++ .++..- ..+|+.+|+.+ .+...+..++..-++.+=.
T Consensus 252 ~~~~~~kie~----~~~p~evk~k~~~El~kL~~m------~~~SaE~~ViRnYlDwll~ 301 (782)
T COG0466 252 VEELREKIEK----LKLPKEAKEKAEKELKKLETM------SPMSAEATVIRNYLDWLLD 301 (782)
T ss_pred HHHHHHHHhh----cCCCHHHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHHHHh
Confidence 3444444455 566553 66666666653 3344566677766666543
No 11
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=46.83 E-value=1.4e+02 Score=35.06 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=62.9
Q ss_pred HHhcccCcchh--hhhhHHHHHHHHHHHhhh--h------hcCChhhHHHHHHHhh---------cCCCC-ccHHHHHHH
Q 015334 119 RYLKIVPLITL--VDNARVRERLEDIEKDQR--E------YTLDEEDQKMQDAILR---------REPSK-HETMVLKKT 178 (409)
Q Consensus 119 ~~L~~lPl~~l--~is~ev~Eqvelv~~q~r--~------~~~d~~d~~l~~~il~---------~e~~~-~d~~~l~r~ 178 (409)
++|..||-..- -|+.+.||||..+++++. . .-.|+.-.+.+.+.|- .|+.. +|.+..++.
T Consensus 1050 ~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ 1129 (1439)
T PF12252_consen 1050 QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKA 1129 (1439)
T ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 45666665421 188999999998887755 1 1134444444433332 25555 677777765
Q ss_pred hhcCCCCcccchHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHH
Q 015334 179 LSTSYPKMGFNEVLQKENEKLQLELQRSQTQMDVSQCEVIQRLIDVTE 226 (409)
Q Consensus 179 ~~~~~~~L~l~s~l~~E~~~L~~el~~~~~~~d~~~~~~i~~Li~ll~ 226 (409)
+.. -+.|++|+.-|+.|..+.....++-+.+-|+.|-.-|.
T Consensus 1130 ia~-------lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq 1170 (1439)
T PF12252_consen 1130 IAN-------LNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQ 1170 (1439)
T ss_pred HHH-------HHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHH
Confidence 555 23399999999999987776555556666665544444
No 12
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=45.50 E-value=3e+02 Score=26.77 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=33.9
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHhccchHHHHHhhchhhhhhHHHHHHHHHHHhcccCcc
Q 015334 67 YPETREPLEQLEDALRRSYLLVNSCQDRSYLYLLAMGWNIVYQFRKAQTEIDRYLKIVPLI 127 (409)
Q Consensus 67 ~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~Sklylll~~~~v~~qF~~V~~~I~~~L~~lPl~ 127 (409)
.+.....+..+..++..+..++.+.++. --.++-.-..++..+...+.+|++.|..+|..
T Consensus 229 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~-l~~~l~~l~~~~~~l~~~~~~l~~~l~~~p~~ 288 (291)
T TIGR00996 229 DDALDDALAALSGASAQVRDLLAENRPN-LPQALANLAPVLTLLVDYHPELEQLLHLLPTY 288 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhcchhHHHHHHhcchh
Confidence 3445556666666666666666655433 11233344555566666666677777666643
No 13
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=43.25 E-value=4.7e+02 Score=28.45 Aligned_cols=48 Identities=13% Similarity=0.282 Sum_probs=42.2
Q ss_pred HhhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhh
Q 015334 100 LAMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQR 147 (409)
Q Consensus 100 ll~~~~v~~qF~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r 147 (409)
.+++..+..+.+.-+..+...+..||-....+..++-+|++.|+.--+
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~ 236 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYR 236 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 558899999999999999999999999988888899999988885433
No 14
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.20 E-value=7.4e+02 Score=29.87 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCh-----------------hhhhHHHHHHHHHHHHHHHHHHhccc
Q 015334 40 KNCRQFAQHLKLIGNLLEQLKISELKKYP-----------------ETREPLEQLEDALRRSYLLVNSCQDR 94 (409)
Q Consensus 40 k~C~~Larrv~lL~~lLeeL~~~~~~~~~-----------------~~~~~L~~L~~aL~~Ak~Lv~~C~~~ 94 (409)
+--.+...++.-|...+++|+......+. ++...++.|....+++..|+++=.++
T Consensus 1612 ~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g 1683 (1758)
T KOG0994|consen 1612 KLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEG 1683 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456677888888888888744322232 23344555556666666666654444
No 15
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=38.53 E-value=91 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHh
Q 015334 192 LQKENEKLQLELQRSQTQMDVSQCEVIQRLIDVTEA 227 (409)
Q Consensus 192 l~~E~~~L~~el~~~~~~~d~~~~~~i~~Li~ll~~ 227 (409)
+..|+..|+.+++.. +-.+|+.+++++--
T Consensus 179 Id~Ev~~lk~qi~s~-------K~qt~qw~~g~v~~ 207 (220)
T KOG3156|consen 179 IDQEVTNLKTQIESV-------KTQTIQWLIGVVTG 207 (220)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 999999999988644 34478888877643
No 16
>PHA02687 ORF061 late transcription factor VLTF-4; Provisional
Probab=36.85 E-value=1.2e+02 Score=28.45 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHH
Q 015334 39 KKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNS 90 (409)
Q Consensus 39 Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~ 90 (409)
=++...|-.||+-|+.+|+.+|.+ ++...|..|-.+|..++.++..
T Consensus 168 ikDlK~Ln~RVsAlSTVLeDVQAa------sIsRqFtsL~KaI~eLk~lA~~ 213 (231)
T PHA02687 168 LADFKDLTGRVKALSSVLTDVQAS------GVRRSFSGLGKALTEAAAIAAT 213 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 457788999999999999999964 5678899999999999877654
No 17
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=36.06 E-value=20 Score=31.93 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=9.8
Q ss_pred HHHHHHHHHcCCCC
Q 015334 359 CIRRKLRKTLNIAV 372 (409)
Q Consensus 359 ~~R~~iR~ky~I~G 372 (409)
.+|..||.||||+-
T Consensus 63 ~mRq~IRdKY~l~k 76 (139)
T PF05835_consen 63 KMRQHIRDKYGLKK 76 (139)
T ss_dssp HHHHHHHHHHT---
T ss_pred HHHHHHHhhccccc
Confidence 36999999999987
No 18
>PF09806 CDK2AP: Cyclin-dependent kinase 2-associated protein; InterPro: IPR019187 Members of this family of proteins are cell-growth suppressors, associating with and influencing the biological activities of important cell cycle regulators in the S phase including monomeric non-phosphorylated cyclin-dependent kinase 2 (CDK2) and DNA polymerase alpha/primase. An association between mutations in the gene coding for this protein and oral cancer has been described. ; PDB: 2KW6_A.
Probab=30.25 E-value=41 Score=31.60 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHh
Q 015334 49 LKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSC 91 (409)
Q Consensus 49 v~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C 91 (409)
-.-|+.+++|+...-.|..-..+.+.++|+.-+..|+.||+.|
T Consensus 141 Y~~LL~viee~g~~irpty~g~r~~~eRlkr~I~hAr~lvreC 183 (193)
T PF09806_consen 141 YAQLLAVIEEMGKDIRPTYAGSRSAMERLKRGIIHARILVREC 183 (193)
T ss_dssp HHHHHHHHHHHCCCHHHHHCT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCcccccCccHHHHHHHHHHHHHHHHHHH
Confidence 3345556677753211222244788999999999999999999
No 19
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=28.96 E-value=1.4e+02 Score=28.24 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHH
Q 015334 39 KKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLV 88 (409)
Q Consensus 39 Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv 88 (409)
-++...|-.||.-|..+|+++|.. ++...|..|-.++..++.|.
T Consensus 139 ~kdlK~l~~rVsavstVLeDvQAa------sv~R~fs~L~K~i~~l~~l~ 182 (200)
T PF03286_consen 139 IKDLKNLNARVSAVSTVLEDVQAA------SVSRQFSSLSKAIEELKDLA 182 (200)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh------ccchHHHHHHHHHHHHHHHH
Confidence 466788999999999999999965 45577889999999988873
No 20
>PF14949 ARF7EP_C: ARF7 effector protein C-terminus
Probab=27.64 E-value=25 Score=29.70 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=16.5
Q ss_pred cCcccccCCcccceeecccchhhhh
Q 015334 300 TDLLGCCSEPLLCMKTFFYPCGTFS 324 (409)
Q Consensus 300 ~GL~dC~~D~~~C~~t~~CPC~~~g 324 (409)
.+||||.+. =|.|||+||-..|
T Consensus 60 ~DlCDCL~~---~C~GC~~PC~~C~ 81 (103)
T PF14949_consen 60 KDLCDCLDE---DCPGCHYPCPKCG 81 (103)
T ss_pred CccccccCC---CCCCccccCCCCC
Confidence 489999763 4568899998654
No 21
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=27.48 E-value=2.3e+02 Score=23.23 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=41.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhc
Q 015334 35 ARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQ 92 (409)
Q Consensus 35 a~~~Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~ 92 (409)
...-|++=..|++++.-+.++|+.|...+ ...++....+..-...-++|+.|+..--
T Consensus 8 ~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~-Vlt~ee~e~I~~~~t~~~qAr~Lld~l~ 64 (94)
T cd08329 8 LSLIRKNRMALFQHLTSVLPILDSLLSAN-VITEQEYDVIKQKTQTPLQARELIDTVL 64 (94)
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34567888899999988999999998654 3455555555555555688888887754
No 22
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.51 E-value=3.4e+02 Score=27.72 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=44.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHH
Q 015334 35 ARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNS 90 (409)
Q Consensus 35 a~~~Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~ 90 (409)
.+.+++.+..+.+..+.+..+...|+..+...+++....+++|+.-+.+++..+.+
T Consensus 31 ~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~D 86 (330)
T PF07851_consen 31 SKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFD 86 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHH
Confidence 35666677888888888988888888765556778889999999999998866544
No 23
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.18 E-value=8.6e+02 Score=29.37 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=24.6
Q ss_pred hchhhhhhHHHHHHHHHHHhcccCcchhhhhhH
Q 015334 102 MGWNIVYQFRKAQTEIDRYLKIVPLITLVDNAR 134 (409)
Q Consensus 102 ~~~~v~~qF~~V~~~I~~~L~~lPl~~l~is~e 134 (409)
.=.....+.+.++.+|...+..||-+..+++..
T Consensus 1505 ~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T 1537 (1758)
T KOG0994|consen 1505 ELPLTPEQIQQLTGEIQERVASLPNVDAILSRT 1537 (1758)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhh
Confidence 334556788899999999998888777766543
No 24
>PHA03089 late transcription factor VLTF-4; Provisional
Probab=25.15 E-value=2.2e+02 Score=26.61 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHH
Q 015334 10 IANVAQLAGFDAVRLIGMIVKAATTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVN 89 (409)
Q Consensus 10 ~a~v~ql~g~d~~~la~~I~~aa~~a~~~Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~ 89 (409)
++++.+.--.|-.+|...+... =++...|..||..|..+|+.+|.+. +...+..|-.++..++.|+.
T Consensus 109 ~~~~n~~d~id~SdLklat~~I-------~KdlK~i~~RVsAlsTVLeDvQAa~------i~Rqftsl~K~i~~Lk~l~~ 175 (191)
T PHA03089 109 AAEVNHEDVIDLSDLKLATENI-------IKDLKKINSRVSAVSTVLEDVQAAS------ISRQYTSLIKEIDKLKDLVN 175 (191)
T ss_pred ccccCcccccchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHH
Confidence 3444444444555554444322 3566789999999999999999653 45678888888888888554
No 25
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=25.02 E-value=5.9e+02 Score=24.06 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHhh---hhhHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHH-hc-cc
Q 015334 20 DAVRLIGMIVKAA---TTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNS-CQ-DR 94 (409)
Q Consensus 20 d~~~la~~I~~aa---~~a~~~Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~-C~-~~ 94 (409)
|+..+-.+|..+- +--.+.+|-|.++..-+.=+.|+.+.++.- ++++...-+.-+... ...||+. |. +|
T Consensus 49 d~~~l~~eie~~~p~g~ld~vF~KyC~k~~~~~~C~~~f~~~v~~C---l~~ee~~~~~~~~~i---~~~ll~fvC~k~G 122 (213)
T PF07165_consen 49 DLTQLQQEIEEAKPTGDLDEVFNKYCPKRPQAKECFDPFTEKVKPC---LDEEEKEILDVMMNI---IPSLLDFVCYKDG 122 (213)
T ss_pred CHHHHHHHHHHcCccccHHHHHHHHhHhhHHHHHHHHHHHhhcccC---CCHHHHHHHHHHHHH---HHHHHHHHHcCCc
Confidence 7777888887766 223578999999999999999999988742 344545544444444 4455555 87 45
Q ss_pred hHHHHHhhchhhhhhHHHHHHHHHHHhccc
Q 015334 95 SYLYLLAMGWNIVYQFRKAQTEIDRYLKIV 124 (409)
Q Consensus 95 Sklylll~~~~v~~qF~~V~~~I~~~L~~l 124 (409)
..+.+ +.++.-.+=|......|.++...+
T Consensus 123 d~Ial-f~~~~g~eC~~~~~~~i~~C~~~~ 151 (213)
T PF07165_consen 123 DRIAL-FIAEGGPECFESLKDNIQQCANKT 151 (213)
T ss_pred hhhHh-hcccCcHHHHHHhhHHHHHHHHHH
Confidence 56655 555667777888888888887543
No 26
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.66 E-value=5.3e+02 Score=23.83 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=34.0
Q ss_pred hhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhh
Q 015334 101 AMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQR 147 (409)
Q Consensus 101 l~~~~v~~qF~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r 147 (409)
....+++..|=.|...++++|...|-..-.....+.+-|+++.+|+.
T Consensus 66 ~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~ 112 (178)
T PRK14161 66 YAIATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELD 112 (178)
T ss_pred HHHHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHH
Confidence 35567888899999999999988775432222456778888887765
No 27
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=23.60 E-value=3.7e+02 Score=21.97 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhccchHHHHHhhchhhhhhHHHHHHHHH
Q 015334 39 KKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQDRSYLYLLAMGWNIVYQFRKAQTEID 118 (409)
Q Consensus 39 Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~Sklylll~~~~v~~qF~~V~~~I~ 118 (409)
|.+=..|+.||+.+.|+|..|...+. .+.+-......-.-.-++++.|+..-+ ..|+.....|..+-.++.
T Consensus 4 ~~hRe~LV~rI~~v~plLD~Ll~n~~-it~E~y~~V~a~~T~qdkmRkLld~v~--------akG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 4 KSNRELLVTHIRNTQCLVDNLLKNDY-FSTEDAEIVCACPTQPDKVRKILDLVQ--------SKGEEVSEYFLYLLQQLA 74 (85)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhccCC-ccHHHHHHHHhCCCCHHHHHHHHHHHH--------hcCchHHHHHHHHHHHHH
Confidence 45557899999999999999986432 233222222222222233333332211 133455666777777766
Q ss_pred HHh
Q 015334 119 RYL 121 (409)
Q Consensus 119 ~~L 121 (409)
++-
T Consensus 75 ~~y 77 (85)
T cd08324 75 DAY 77 (85)
T ss_pred Hhh
Confidence 543
No 28
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.69 E-value=6.5e+02 Score=23.71 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHH----HHHHHHhccc-
Q 015334 20 DAVRLIGMIVKAATTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRS----YLLVNSCQDR- 94 (409)
Q Consensus 20 d~~~la~~I~~aa~~a~~~Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~A----k~Lv~~C~~~- 94 (409)
|+-.+-..|.......+.--.-=+.+..--+....-|+++.. ....+|.+..+|..+-.+|+.. ..|++..+..
T Consensus 10 ~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~-~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l 88 (200)
T cd07639 10 EVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH-HGPKDPMMAECLEKFSDGLNHILDSHAELLEATQFSF 88 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444433322222222333333333444444442 2345666778888888888766 5566665543
Q ss_pred -hHHHHHhhc-----hhhhhhHHHHHHHHHHHhcc
Q 015334 95 -SYLYLLAMG-----WNIVYQFRKAQTEIDRYLKI 123 (409)
Q Consensus 95 -Sklylll~~-----~~v~~qF~~V~~~I~~~L~~ 123 (409)
..|-.+++. ...-.+|.++..+.+.+|.-
T Consensus 89 ~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K 123 (200)
T cd07639 89 KQQLQLLVKEDLRGFRDARKEFERGAESLEAALQH 123 (200)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHH
Confidence 334444443 34556677777777666543
No 29
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=22.30 E-value=4.5e+02 Score=21.90 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=40.3
Q ss_pred cchhhhhHHHHHHHhhhcHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH-HhhhccCCChhhhhHHHHHHHHH
Q 015334 3 NWEHFGEIANVAQLAGFDAVRLIGMIVKAATTARMHKKNCRQFAQHLKLIGNLLEQ-LKISELKKYPETREPLEQLEDAL 81 (409)
Q Consensus 3 ~~~~~~~~a~v~ql~g~d~~~la~~I~~aa~~a~~~Kk~C~~Larrv~lL~~lLee-L~~~~~~~~~~~~~~L~~L~~aL 81 (409)
.+..++++..+|+-.|+|.-.+..-|....-.-...+.. .+. +.+...+..-.+....++|..++
T Consensus 17 ~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~--------------~~~~~~~~~~~~~f~l~~~~KDl~l~~ 82 (122)
T PF14833_consen 17 NMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNR--------------APRMILNGDFDPGFSLDLARKDLRLAL 82 (122)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHH--------------HHHHHHTTTTCSSSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhh--------------hhhhhhcccCCccchhHhhccHHHHHH
Confidence 356799999999999999888887776533332232211 121 22222222235566667777766
Q ss_pred HHHHH
Q 015334 82 RRSYL 86 (409)
Q Consensus 82 ~~Ak~ 86 (409)
+-|+.
T Consensus 83 ~~a~~ 87 (122)
T PF14833_consen 83 DLAKE 87 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 30
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.19 E-value=4.4e+02 Score=22.47 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=44.9
Q ss_pred cchhhhhhHHHHHHHHHHHhhh-hhcCChhhH-HHHHHHhh---cCCCC---ccHHHHHHHhhcCCCCcccch----H-H
Q 015334 126 LITLVDNARVRERLEDIEKDQR-EYTLDEEDQ-KMQDAILR---REPSK---HETMVLKKTLSTSYPKMGFNE----V-L 192 (409)
Q Consensus 126 l~~l~is~ev~Eqvelv~~q~r-~~~~d~~d~-~l~~~il~---~e~~~---~d~~~l~r~~~~~~~~L~l~s----~-l 192 (409)
++..+....+.|++..|..++= +..+.+++- ...++|+. ...+. .-+..++..+++ +++.. . +
T Consensus 13 ~~gaG~~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~----~~~~r~~~~~~l 88 (108)
T COG3937 13 LIGAGLAAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSD----LEVARQSEMDEL 88 (108)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhh----ccccccchHHHH
Confidence 4444556667777777777654 555444443 33344444 12221 244566677777 66544 1 8
Q ss_pred HHHHHHHHHHHHHh
Q 015334 193 QKENEKLQLELQRS 206 (409)
Q Consensus 193 ~~E~~~L~~el~~~ 206 (409)
+.++++|++++...
T Consensus 89 ~~rvd~Lerqv~~L 102 (108)
T COG3937 89 TERVDALERQVADL 102 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887654
No 31
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.00 E-value=3.1e+02 Score=21.84 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhc
Q 015334 39 KKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQ 92 (409)
Q Consensus 39 Kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~ 92 (409)
+++=..|++||..+.+++..|...+ ...++....+..-...=++|+.|+..--
T Consensus 4 ~~~r~~Li~~v~~v~~ilD~L~~~~-Vit~e~~~~I~a~~T~~~kar~Lld~l~ 56 (82)
T cd08330 4 DQHREALIARVTNVDPILDKLHGKK-VITQEQYSEVRAEKTNQEKMRKLFSFVR 56 (82)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCC-CCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4555689999999999999998543 4555555555554444577777776653
No 32
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.64 E-value=1.1e+03 Score=25.52 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=18.3
Q ss_pred cHHHHHHHhhcCCCCcccchH-HHHHHHHHHHHHH
Q 015334 171 ETMVLKKTLSTSYPKMGFNEV-LQKENEKLQLELQ 204 (409)
Q Consensus 171 d~~~l~r~~~~~~~~L~l~s~-l~~E~~~L~~el~ 204 (409)
++..|-|=+++ +++..- |.+++..-+.|.+
T Consensus 376 Ere~L~reL~~----i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 376 EREKLTRELDK----INIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred HHHHHHHHHHH----hcchHHHHHHHHHhHHHHHH
Confidence 44566677777 666665 6666655555554
Done!