BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015335
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
pdb|1EUJ|B Chain B, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
Length = 166
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 2/148 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
K + VS L++++G I + KHP ADSL VEE+DVGE R VVSGL + + + NR V
Sbjct: 2 KPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMV 61
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLN 363
L+ N+KP K+R V+S+ +V+CAS+ + +E L PP G+ G+RI+F G+P++ LN
Sbjct: 62 ILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELN 119
Query: 364 PKKKQLEKITPNLFTDDKGVATFKGIPF 391
PKKK E+I P+L T+D+ VAT+KG+PF
Sbjct: 120 PKKKIWEQIQPDLHTNDECVATYKGVPF 147
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 2/148 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
K + VS L++++G I + KHP ADSL VEE+DVGE R VVSGL + + + NR V
Sbjct: 2 KPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMV 61
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLN 363
L+ N+KP K+R V+S+ +V+CAS+ + +E L PP G+ G+RI+F G+P++ LN
Sbjct: 62 ILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELN 119
Query: 364 PKKKQLEKITPNLFTDDKGVATFKGIPF 391
PKKK E+I P+L T+D+ VAT+KG+PF
Sbjct: 120 PKKKIWEQIQPDLHTNDECVATYKGVPF 147
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 102/146 (69%), Gaps = 2/146 (1%)
Query: 246 LSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVAL 305
+ VS L++++G I + KHP ADSL VEE+DVGE R VVSGL + + + NR V L
Sbjct: 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60
Query: 306 ITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLNPK 365
+ N+KP K+R V+S+ +V+CAS+ + +E L PP G+ G+RI+F G+P++ LNPK
Sbjct: 61 LCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPK 118
Query: 366 KKQLEKITPNLFTDDKGVATFKGIPF 391
KK E+I P+L T+D+ VAT+KG+PF
Sbjct: 119 KKIWEQIQPDLHTNDECVATYKGVPF 144
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
+E+ S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ ++L +R V
Sbjct: 3 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 62
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNED-HTNVEPLLPPEGAKIGERISFSGID-GKPEEV 361
++ N+KP K+R V S+G++LCAS E + VEPL PP G+ GE + G + G+P+E
Sbjct: 63 VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEE 122
Query: 362 LNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAG 396
L PKKK EK+ + ++ +A +K FMT G
Sbjct: 123 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 157
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+++VG I + HP+AD L V ++D+G+ ++R +V+GL KY P++L NR V ++ N++
Sbjct: 626 LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 684
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KLR + S+G++L A +D V L+P + K+G ++
Sbjct: 685 PKKLRGIGSQGMLLAA--DDGERVALLMPDKEVKLGAKV 721
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From
Pyrococcus Abyssi
Length = 107
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+++VG I + HP+AD L V ++D+G+ ++R +V+GL KY P++L NR V ++ N++
Sbjct: 11 LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 69
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KLR + S+G++L A +D V L+P + K+G ++
Sbjct: 70 PKKLRGIGSQGMLLAA--DDGERVALLMPDKEVKLGAKV 106
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111
Length = 118
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L ++VG I + +H +AD L + ++DVG+ L Q V+ L Y + ++L + V ++ N++
Sbjct: 12 LEMRVGKIVEVKRHENADKLYIVQVDVGQKTL-QTVTSLVPYYSEEELMGKTVVVLCNLQ 70
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
K+R SE ++LCA +D + L P G R+
Sbjct: 71 KAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|B Chain B, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|C Chain C, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|D Chain D, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
Length = 111
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 283 RQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEG 342
R VV+G+AKY P++L +++ ++ N+KP K+ + S+G++L AS D N+ ++P
Sbjct: 46 RTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAAS--DGENLSVIVPDRD 103
Query: 343 AKIGERIS 350
K G ++S
Sbjct: 104 VKEGAKLS 111
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus
Horikoshii
Length = 112
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++VGL++K+ K L+ +D G + R +V+G+A P++L ++ + N+K
Sbjct: 15 FQMKVGLVKKAEKIKRTKKLIKLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIFVVNLK 73
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P K V S+G+++ A ED V + PE +G R+
Sbjct: 74 PKKFSGVESQGMLILAETED-GKVYLIPVPEEVPVGARV 111
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 240 VDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLT 299
VD + S + N+ VG I+ KHP AD L + ++D+GE + Q+V G N D
Sbjct: 32 VDNMIDYSKDIKNLVVGYIQSKEKHPDADKLNICQVDIGEEEPVQIVCGAP---NVDAGQ 88
Query: 300 NRRVALITNVKPG-------KLRDVMSEGLVLCASNE 329
+ VA + PG KLR SEG++ C+ E
Sbjct: 89 HVIVAKVGGRLPGGIKIKRAKLRGERSEGMI-CSLQE 124
>pdb|3G48|A Chain A, Crystal Structure Of Chaperone Csaa Form Bacillus
Anthracis Str. Ames
pdb|3G48|B Chain B, Crystal Structure Of Chaperone Csaa Form Bacillus
Anthracis Str. Ames
Length = 112
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 274 EIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNE--DH 331
EID GE ++Q + + K NP+DL +++ + N P ++ SE LVL E D
Sbjct: 37 EIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPPKRVAGFKSEVLVLGGVPEAGDV 96
Query: 332 TNVEPLLP-PEGAKI 345
++P + P G KI
Sbjct: 97 VLLQPNMELPNGTKI 111
>pdb|2UZ8|A Chain A, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
pdb|2UZ8|B Chain B, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
Length = 174
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 58 VMKWIEFAESFPADSKA----CFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSF 113
V +W+E+ + D + +L LN L K L G + AD++++ +H F
Sbjct: 71 VQQWLEYRVT-QVDGHSSKNDIHTLLXDLNSYLEDKVYLTGYNF--TLADILLYYGLHRF 127
Query: 114 VVGLANLDQGKMPHVMRWMDYIQ 136
+V L ++ K +V RW +IQ
Sbjct: 128 IVDLTVQEKEKYLNVSRWFCHIQ 150
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 22/101 (21%)
Query: 263 KHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALIT---------NVKPGK 313
+HP+AD L V +++VG +L +V G P+ RVA+ T +K K
Sbjct: 55 QHPNADKLRVTKVNVGGDRLLDIVCG-----APNCRQGLRVAVATIGAVLPGDFKIKAAK 109
Query: 314 LRDVMSEGLVLCASNE-----DHTNVEPLLPPEGAKIGERI 349
LR SEG+ LC+ +E DH+ + L P A IG I
Sbjct: 110 LRGEPSEGM-LCSFSELGISDDHSGIIEL--PADAPIGTDI 147
>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
pdb|2E8G|B Chain B, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
Length = 241
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 248 VSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLT---NRRVA 304
V ++I VG + KHPSAD LLV +++GE + V +DLT RVA
Sbjct: 133 VIAVDIVVGEVMSVGKHPSADRLLVTNVNIGERAVTVVT---------NDLTVKEGNRVA 183
Query: 305 LITNVKPGKLRDVMSEGLVLCASNEDHTNV 334
+ + P ++SEG+ L A NV
Sbjct: 184 -VALLPPRNFFGIVSEGMFLGAGEGVLKNV 212
>pdb|1GD7|A Chain A, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|B Chain B, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|C Chain C, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|D Chain D, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities
Length = 109
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 247 SVSLLNIQVGLIRKSWKHPSADSLLVEE-IDVGEAKLRQVVSGLAKYCNPDDLTNRRVAL 305
+ +L+++VG + ++ H A + +D+G ++Q + + + P+DL R V
Sbjct: 6 AFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVC 65
Query: 306 ITNVKPGKLRDVMSEGLVLCASNE 329
N+ ++ +SE LVL +E
Sbjct: 66 AVNLGAKRVAGFLSEVLVLGVPDE 89
>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|B Chain B, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|C Chain C, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|D Chain D, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|E Chain E, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|F Chain F, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|G Chain G, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|H Chain H, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|I Chain I, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|J Chain J, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|K Chain K, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|L Chain L, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
Length = 446
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 228 GQEKKKSSETAAVDKDKELSVSLLNIQVGLIRK----------SWKH-PS---ADSLLVE 273
G KK+ A++K +LLN +VG RK S++H PS + SL++E
Sbjct: 291 GIAGKKNFTVIAIEK------ALLNSEVGFCRKILSILEXYGVSFEHXPSGVDSVSLVIE 344
Query: 274 EIDVGEAKLRQVVSGLAKYCNPDDL-TNRRVALITNVKPGKLRDVMSEGLVLCASNEDHT 332
+ + + K +++ + K CNPD + + AL+ V G + + A ++++
Sbjct: 345 DCKL-DGKCDKIIEEIKKQCNPDSIEIHPNXALVATVGTGXAKTKGIANKIFTALSKENV 403
Query: 333 NVEPL 337
N+ +
Sbjct: 404 NIRXI 408
>pdb|3BU2|A Chain A, Crystal Structure Of A Trna-Binding Protein From
Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Syr77
pdb|3BU2|B Chain B, Crystal Structure Of A Trna-Binding Protein From
Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Syr77
pdb|3BU2|C Chain C, Crystal Structure Of A Trna-Binding Protein From
Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Syr77
pdb|3BU2|D Chain D, Crystal Structure Of A Trna-Binding Protein From
Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Syr77
Length = 199
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 255 VGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSG 288
VG + KHP AD L V +DV KL Q+V G
Sbjct: 95 VGYVETKDKHPDADKLSVLSVDVATEKL-QIVCG 127
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 43 YSDILKSSGKSSNDEVMKWIEFAESFPADSKACFDVLIKLNEELATK-SVLLGN 95
Y DIL+ ++ V KWI E +P D ++L++EL K +++GN
Sbjct: 361 YCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGN 414
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 43 YSDILKSSGKSSNDEVMKWIEFAESFPADSKACFDVLIKLNEELATK-SVLLGN 95
Y DIL+ ++ V KWI E +P D ++L++EL K +++GN
Sbjct: 361 YCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGN 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,625,512
Number of Sequences: 62578
Number of extensions: 470023
Number of successful extensions: 1062
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 31
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)