BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015335
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os06g0508700 PE=2 SV=2
Length = 801
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 137/216 (63%), Gaps = 4/216 (1%)
Query: 197 GDTALQEKKKSVETEA---VDKDKTKKAVGDKEAGQEKKKSSETAAVDKDKELSVSLLNI 253
G A + K + EA DK K K + ++KK+S + + + + +++V+ L+I
Sbjct: 586 GSQAERSSKAQADAEAKKVADKLKGTKLSDGGQKKEQKKQSGGSKSKNAEVDVTVAKLDI 645
Query: 254 QVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGK 313
+VGLIRK+ KHP ADSL VEEIDVGE R VVSGL K+ +++ NR+V ++ N+KP
Sbjct: 646 RVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVA 705
Query: 314 LRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLNPKKKQLEKIT 373
+R + S +VL ASNEDHT VE + PPE A +GER++F+G G+PE LN K K EK++
Sbjct: 706 MRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLS 765
Query: 374 PNLFTDDKGVATFKGIPFMTSAGPC-TSSIPKASIK 408
+L ++ + VA +K +PF TSAG C SI I+
Sbjct: 766 ADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana
GN=At4g13780 PE=2 SV=1
Length = 797
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 120/167 (71%), Gaps = 1/167 (0%)
Query: 243 DKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRR 302
D+E++++ L+I+VG I K+ KHP AD+L VEEIDVG ++R VVSGL KY +++ NR
Sbjct: 631 DREITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRM 690
Query: 303 VALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVL 362
V ++ N+KP K+RD++S+ +VL AS+ D + VE + PP+ A IGER++F G +G+P++VL
Sbjct: 691 VCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVL 750
Query: 363 NPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAGPC-TSSIPKASIK 408
NPKKK E + +L T + VA +K +PF TSAG C SSI +I+
Sbjct: 751 NPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797
>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2
Length = 312
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 2/148 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
K + VS L++++G I + KHP ADSL VEE+DVGE R VVSGL + + + NR V
Sbjct: 148 KPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMV 207
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLN 363
L+ N+KP K+R V+S+ +V+CAS+ + +E L PP G+ G+RI+F G+P++ LN
Sbjct: 208 ILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELN 265
Query: 364 PKKKQLEKITPNLFTDDKGVATFKGIPF 391
PKKK E+I P+L T+D+ VAT+KG+PF
Sbjct: 266 PKKKIWEQIQPDLHTNDECVATYKGVPF 293
>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Mus musculus GN=Aimp1 PE=1 SV=2
Length = 310
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%), Gaps = 3/157 (1%)
Query: 236 ETAAVDKD-KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCN 294
++AA D K + S L++++G I + KHP ADSL VEE+DVGEA R VVSGL +
Sbjct: 137 QSAAASTDSKPIDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVP 196
Query: 295 PDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGI 354
+ + NR V L+ N+KP K+R V+S+ +V+CAS+ + VE L PP G+ G+RI+F
Sbjct: 197 LEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAF 254
Query: 355 DGKPEEVLNPKKKQLEKITPNLFTDDKGVATFKGIPF 391
G+P++ LNPKKK E+I P+L T+ + VAT+KG PF
Sbjct: 255 PGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPF 291
>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1
Length = 359
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%), Gaps = 3/157 (1%)
Query: 236 ETAAVDKD-KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCN 294
++AA D K + VS L++++G I KHP ADSL VEE+DVGEA R V+SGL +
Sbjct: 186 QSAAPSADSKPVDVSRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVP 245
Query: 295 PDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGI 354
D + NR V L+ N+KP K+R ++S+ +V+CAS+ + VE L PP G+ G+RI+F
Sbjct: 246 LDQMQNRMVVLLCNLKPAKMRGILSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAF 303
Query: 355 DGKPEEVLNPKKKQLEKITPNLFTDDKGVATFKGIPF 391
G+P++ LNPKKK E+I P+L T+ + VAT+KG PF
Sbjct: 304 PGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPF 340
>sp|Q9P6K7|YLF4_SCHPO Uncharacterized tRNA-binding protein C30C2.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC30C2.04 PE=4 SV=1
Length = 450
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 177/339 (52%), Gaps = 33/339 (9%)
Query: 57 EVMKWIEFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVG 116
++++W A S P ++++ + L +E S + S AD+ V++ +HS++ G
Sbjct: 107 QILEWTTKAFS-PIETQSIVEQL----DEFLKSSTFIAQDSGISVADLAVYARIHSYICG 161
Query: 117 LANLDQGKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKK---- 172
L+ + K+ +V RW D+IQ +E++ + ++S++ + +D NA K
Sbjct: 162 LSAKEGYKLNNVCRWFDFIQHQESVMEAANSMSMKL-----------ANIDLNAPKIQRP 210
Query: 173 -TVQSTNHAEKSEAPSNLKS-GDAKKGDTALQEKKKSVETEAVDKDKTKKAVGDKEAGQE 230
++ +K PS S +K L+ KK + + KDK K ++A +E
Sbjct: 211 SVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKDKKDKKDKKEKAPKE 270
Query: 231 KKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAK-LRQVVSGL 289
K++ S+++ ++G I K+ KHP+ADSL V I G+A+ R V SGL
Sbjct: 271 PPKAATPVP---------SMIDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGL 321
Query: 290 AKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
KY + + R+V ++ N+KP +R V S+ +V CAS+ D + VE +LPPE A+IG+R+
Sbjct: 322 VKYIPLEQMQQRKVIVVANLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRL 381
Query: 350 SFSGIDG-KPEEVLNPKKKQLEKITPNLFTDDKGVATFK 387
+F G D +PE LNPK+K E I P + + + +K
Sbjct: 382 TFEGFDTEEPEAQLNPKRKIWEAIQPGFTSGEDLICGYK 420
>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2
SV=1
Length = 528
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 123/227 (54%), Gaps = 11/227 (4%)
Query: 178 NHAEKSEAPSNLKSGDAKKGDTAL---QEKKKSVETEAVDKDKTKKAVGDKEAGQEKKKS 234
+ AE+ P +LK+ K + L +EK S E + + D A K + K+
Sbjct: 298 DFAEELVHPGDLKASVEKALNKLLHPIREKFNSPEMKKLSNDAYPDASKQKSVPKGSTKN 357
Query: 235 SETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCN 294
S T +D SLL+++VG I +HP ADSL VE +DVGEA R VVSGL +Y
Sbjct: 358 SGTEEIDP------SLLDLRVGKILSVSQHPDADSLYVESVDVGEANPRCVVSGLVQYVP 411
Query: 295 PDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNE-DHTNVEPLLPPEGAKIGERISFSG 353
D L R V L+ N+KP K+R + S+G++LCAS E + VEPL PP G+ GERI G
Sbjct: 412 SDQLLGRSVVLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGERIYIEG 471
Query: 354 ID-GKPEEVLNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAGPCT 399
+ G+PE L PKKK EK+ + D A +KG F+T G T
Sbjct: 472 YENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVT 518
>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars
PE=2 SV=1
Length = 528
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 4/193 (2%)
Query: 211 EAVDKDKTKKAVGDKEAGQEKKKSSETAAVDKD--KELSVSLLNIQVGLIRKSWKHPSAD 268
E + + KK D G K+K+ + +E+ SLL+++VG I +HP AD
Sbjct: 326 EKFNSPEMKKLSNDAYPGASKQKTVPKGSTKNSGPEEIDPSLLDLRVGKILSVRQHPDAD 385
Query: 269 SLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASN 328
SL VE +DVGE R VVSGL +Y D L R V L+ N+KP K+R + S+G++LCAS
Sbjct: 386 SLYVESVDVGEENPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCAST 445
Query: 329 E-DHTNVEPLLPPEGAKIGERISFSGID-GKPEEVLNPKKKQLEKITPNLFTDDKGVATF 386
E + VEPL PP G+ GERI G + G+PE L PKKK EK+ + D A +
Sbjct: 446 EGEQKQVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQW 505
Query: 387 KGIPFMTSAGPCT 399
KG F+T G T
Sbjct: 506 KGKNFLTKLGSVT 518
>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars
PE=2 SV=3
Length = 528
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
+E+ S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ ++L +R V
Sbjct: 361 EEIIPSRLDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 420
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNEDHT-NVEPLLPPEGAKIGERISFSGID-GKPEEV 361
++ N+KP K+R V S+G++LCAS E + VEPL PP G+ GER+ G + G+P+E
Sbjct: 421 VVLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEE 480
Query: 362 LNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAG 396
L PKKK EK+ + D VA +K FMT G
Sbjct: 481 LKPKKKVFEKLQADFKISDDCVAQWKQTNFMTKLG 515
>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4
Length = 528
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 2/155 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
+E+ S L+I+VG + KHP ADSL VE+IDVGEA+ R VVSGL ++ ++L +R V
Sbjct: 361 EEVIPSRLDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 420
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNED-HTNVEPLLPPEGAKIGERISFSGID-GKPEEV 361
++ N+KP K+R V S+G++LCAS E + VEPL PP G+ GER+ G + G+P+E
Sbjct: 421 VVLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEE 480
Query: 362 LNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAG 396
L PKKK EK+ + D+ +A +K FMT G
Sbjct: 481 LKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMG 515
>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2
SV=3
Length = 528
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 2/155 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
+E+ S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ ++L +R V
Sbjct: 361 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 420
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNED-HTNVEPLLPPEGAKIGERISFSGID-GKPEEV 361
++ N+KP K+R V S+G++LCAS E + VEPL PP G+ GER+ G + G+P+E
Sbjct: 421 VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEE 480
Query: 362 LNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAG 396
L PKKK EK+ + ++ +A +K FMT G
Sbjct: 481 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2
SV=3
Length = 528
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 2/155 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
+E+ S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ ++L +R V
Sbjct: 361 EEVIPSRLDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 420
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNEDHT-NVEPLLPPEGAKIGERISFSGID-GKPEEV 361
++ N+KP K+R V S+G++LCAS E + VEPL PP G+ GER+ G + G+P+E
Sbjct: 421 VVLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEE 480
Query: 362 LNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAG 396
L PKKK EK+ + ++ +A +K FMT G
Sbjct: 481 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2
Length = 529
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 2/159 (1%)
Query: 243 DKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRR 302
D E+ S L+I+VG + KHP ADSL +E+IDVGE + R VVSGL Y + L +R
Sbjct: 361 DDEVIPSRLDIRVGKVISVEKHPDADSLYLEKIDVGEEQPRTVVSGLVAYITEEQLQDRL 420
Query: 303 VALITNVKPGKLRDVMSEGLVLCASNE-DHTNVEPLLPPEGAKIGERISFSGID-GKPEE 360
V L+ N+KP K+R + S+ +VLCAS E + VEPL PPEG+ G+R+ G + GKP++
Sbjct: 421 VVLLCNLKPQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDD 480
Query: 361 VLNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAGPCT 399
L PKKK EK+ +L + VA +K MT G T
Sbjct: 481 ELKPKKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRIT 519
>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1
SV=4
Length = 528
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
+E+ S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ ++L +R V
Sbjct: 361 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 420
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNED-HTNVEPLLPPEGAKIGERISFSGID-GKPEEV 361
++ N+KP K+R V S+G++LCAS E + VEPL PP G+ GE + G + G+P+E
Sbjct: 421 VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEE 480
Query: 362 LNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAG 396
L PKKK EK+ + ++ +A +K FMT G
Sbjct: 481 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2
SV=1
Length = 527
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 118/228 (51%), Gaps = 3/228 (1%)
Query: 172 KTVQSTNHAEKSEAPSNLKSGDAKKGDTALQEKKKSVETEAVDKDKTKKAVGDKEAGQEK 231
KT + EK A + GD K A K E + + KK K
Sbjct: 287 KTYTAYETLEKDFAEQVVHPGDLKNSVEAALNKLLDPIREKFNSPELKKLTNAAYPNPSK 346
Query: 232 KKSSETAAVDKDKELSV-SLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLA 290
K +E + + E V S L+I+VG + KHP ADSL VE+IDVGE + R VVSGL
Sbjct: 347 AKPAEKGTKNSEPETIVPSRLDIRVGKVVSVEKHPDADSLYVEKIDVGEPEPRTVVSGLV 406
Query: 291 KYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASN-EDHTNVEPLLPPEGAKIGERI 349
++ + L +R V L+ N+KP K+R V S+G+VLCAS+ + VEPL PP GER+
Sbjct: 407 QFVPKEQLQDRLVVLLCNLKPQKMRGVESQGMVLCASSVGEPRQVEPLDPPAECCAGERV 466
Query: 350 SFSGI-DGKPEEVLNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAG 396
G DG+P++ L PKKK EK+ + + +A +K F+T G
Sbjct: 467 YVEGYEDGEPDDELKPKKKVFEKLQADFRISEDCIAQWKERNFLTKLG 514
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=mrs-1 PE=2 SV=1
Length = 917
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 243 DKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRR 302
D + V L+++VG I K KHP AD+L VE+IDVGE+ R VVSGL ++ D + NR
Sbjct: 752 DDTIDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRL 811
Query: 303 VALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVL 362
V ++ N+KP K+R V S +V+CAS+ D VE + P +K G + +P+E L
Sbjct: 812 VVVLCNLKPAKMRGVESRAMVMCASSPD--KVEIMEVPADSKPGTPVVCPPYTHRPDEQL 869
Query: 363 NPKKKQLEKITPNLFTDDKGVATFKGIPFM 392
NPKKK E + +L +G A +KG P +
Sbjct: 870 NPKKKIWETVAEDLKVSAEGFAEWKGQPLL 899
>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ARC1 PE=1 SV=2
Length = 376
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 4/141 (2%)
Query: 249 SLLNIQVGLIRKSWKHPSADSLLVEEIDVG-EAKLRQVVSGLAKYCNPDDLTNRRVALIT 307
S ++ +VG I+K+ KHP ADSL V IDVG E R V SGL K+ D + R V ++
Sbjct: 207 SAIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKHFPLDAMQERYVVVVC 266
Query: 308 NVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGI-DGKPEEVLNPKK 366
N+KP +R + S +VLC SN+D VE + PP+ +K G+++ F G D P + LNPKK
Sbjct: 267 NLKPVNMRGIKSTAMVLCGSNDD--KVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKK 324
Query: 367 KQLEKITPNLFTDDKGVATFK 387
K E + P+ T+D FK
Sbjct: 325 KIWEHLQPHFTTNDGLEVIFK 345
>sp|B6YUN0|SYM_THEON Methionine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=metG PE=3 SV=1
Length = 733
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+++VG I HP+AD L V ++D+G ++RQ+V+GL KY + DDL NR V +I N++
Sbjct: 637 LDLRVGKIVDVQDHPNADKLYVVKVDLGN-EVRQLVAGLKKYYSKDDLLNRYVVIIANLE 695
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KLR + S+G++L A +D NV L+P + K+G RI
Sbjct: 696 PKKLRGIESQGMLLAA--DDGENVALLMPDKEVKLGARI 732
>sp|Q5JDZ7|SYM_PYRKO Methionine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=metG PE=3 SV=1
Length = 741
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+++VG I + HP+AD L V ++D+G+ ++RQ+V+GL KY P++L V +I N++
Sbjct: 645 LDLRVGKIIEVNDHPNADRLYVVKVDLGD-EVRQLVAGLKKYYKPEELLGHYVVIIANLE 703
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KLR V S+G++L A +D V L+P + K+G RI
Sbjct: 704 PKKLRGVESQGMLLAA--DDGERVALLMPDKEVKLGARI 740
>sp|Q8U221|SYM_PYRFU Methionine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=metG PE=3 SV=1
Length = 724
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 248 VSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALIT 307
S +++++G I + HP+AD L V ++D+G ++R +V+GL KY P++L NR V ++
Sbjct: 625 FSKIDLRIGKIVEVQDHPNADKLYVVKVDLG-GEIRTLVAGLKKYYKPEELLNRYVVIVA 683
Query: 308 NVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
N++P KLR V S+G++L A +D V L+P + K+G ++
Sbjct: 684 NLEPKKLRGVESQGMLLAA--DDGEKVALLMPDKEVKLGAKV 723
>sp|Q92F90|SYM_LISIN Methionine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=metG PE=3 SV=1
Length = 664
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 188 NLKSGDAKKGDTALQE-----KKKSVETEAVDKDKTKKAVGDKEAGQEKKKSSETAAVDK 242
NLK D+ G + E KK + +D + + D+ G + ETA V+
Sbjct: 494 NLKKWDSIYGYGEIPEGTTVVKKGTPIFPRLDAEVEVTYIQDEMKGSAPAPAEETAEVEA 553
Query: 243 DKELSVSL-----LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDD 297
+ + + ++++V +++ K AD LL ++D+GE KLRQV+SG+A++ P++
Sbjct: 554 LETPQIGIEDFDKIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEE 613
Query: 298 LTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNV 334
L ++V +++N+KP KLR +MSEG++L + +V
Sbjct: 614 LIGKKVIVVSNLKPVKLRGLMSEGMILSGEKDGKLSV 650
>sp|O58721|SYM_PYRHO Methionine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=metG PE=3 SV=1
Length = 723
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+++VG I + HP+AD L + ++D+G+ ++R +V+GL KY P++L N+ V ++ N++
Sbjct: 627 LDLRVGKIIEVKDHPNADKLYIVKVDLGK-EVRTLVAGLKKYYKPEELLNKYVIIVANLE 685
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KLR V S+G++L A +D NV L+P + K+G ++
Sbjct: 686 PKKLRGVESQGMLLAA--DDGENVALLMPDKEVKLGAKV 722
>sp|O26687|SYM_METTH Methionine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=metG PE=3 SV=1
Length = 651
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 22/182 (12%)
Query: 168 SNAKKTVQSTNHAEKSEAPSNLKSGDAKKGDTALQEKKKSVETEAVDKDKTKKAVGDKEA 227
S A + + N +++ L+ G + L K + EA++++K K D E
Sbjct: 491 SAAGRILSIMNLEDEAWGFHELREGQVIERAKPLFSK---ITDEAIEEEKAKLIEEDDEV 547
Query: 228 GQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVS 287
ET +D + ++I+VG+IR + + +D LL IDVGE ++ QVV+
Sbjct: 548 --------ETVTID-----DFTTMDIRVGVIRSAERIEGSDKLLKLIIDVGEREM-QVVA 593
Query: 288 GLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGE 347
GLA+ +P+DL R++ ++ N+KP KL V SEG+VL A+ E +L P A++GE
Sbjct: 594 GLAEKYSPEDLVERKITVLVNLKPAKLFGVKSEGMVL-ATGESLN----ILDPGDAEVGE 648
Query: 348 RI 349
RI
Sbjct: 649 RI 650
>sp|Q9V011|SYM_PYRAB Methionine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=metG PE=1 SV=1
Length = 722
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+++VG I + HP+AD L V ++D+G+ ++R +V+GL KY P++L NR V ++ N++
Sbjct: 626 LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 684
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KLR + S+G++L A +D V L+P + K+G ++
Sbjct: 685 PKKLRGIGSQGMLLAA--DDGERVALLMPDKEVKLGAKV 721
>sp|Q8YAF2|SYM_LISMO Methionine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=metG PE=3 SV=1
Length = 664
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++++V +++ K AD LL ++D+GE KLRQV+SG+A++ P++L ++V +++N+K
Sbjct: 567 IDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVSNLK 626
Query: 311 PGKLRDVMSEGLVLCASNEDHTNV--EPLLPPEGAKI 345
P KLR +MSEG++L + +V P GAK+
Sbjct: 627 PVKLRGLMSEGMILSGEKDGKLSVIEASSALPNGAKV 663
>sp|Q724N6|SYM_LISMF Methionine--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=metG PE=3 SV=1
Length = 665
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++++V +++ K AD LL ++D+GE KLRQV+SG+A++ P++L ++V +++N+K
Sbjct: 568 IDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVSNLK 627
Query: 311 PGKLRDVMSEGLVLCASNEDHTNV--EPLLPPEGAKI 345
P KLR +MSEG++L + +V P GAK+
Sbjct: 628 PVKLRGLMSEGMILSGEKDGKLSVIEASSALPNGAKV 664
>sp|A5UJ98|SYM_METS3 Methionine--tRNA ligase OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=metG PE=3 SV=1
Length = 660
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 66/98 (67%), Gaps = 6/98 (6%)
Query: 253 IQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPG 312
I++G ++++ K +D LL ++D+G+ + RQ+V+GLAK P++L +R+VA++ N++P
Sbjct: 569 IKIGQVKEAEKIEKSDKLLKLQVDIGD-ETRQIVAGLAKQYAPEELIDRKVAVVVNLQPA 627
Query: 313 KLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERIS 350
KL +SEG++L A+ E LL P+ ++GERI
Sbjct: 628 KLFGTLSEGMIL-ATGESAA----LLSPDECEVGERIQ 660
>sp|Q8A3M1|SYM_BACTN Methionine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
GN=metG PE=3 SV=1
Length = 679
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+I+VG I + K P AD LL +ID G + R +VSG+AK+ P++L ++V I N+
Sbjct: 582 LDIRVGTILECQKVPKADKLLQFKIDDG-LETRTIVSGIAKHYQPEELVGKQVCFIANLA 640
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KL+ ++SEG++L A N D + + ++P + K G +
Sbjct: 641 PRKLKGIVSEGMILSAENNDGS-LAVIMPQKEVKPGSEV 678
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++++V L++++ +D LL +DVGEA+ R V SG+ ++ P+DL + V ++ N+
Sbjct: 588 VDLRVALVQEAATVEGSDKLLQLTLDVGEAEPRNVFSGIREFYQPEDLKGKLVVMVANLA 647
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERIS 350
P K+R +S G+VL A N D V + P GAK G+++S
Sbjct: 648 PRKMRFGISNGMVLAAGNGDGVWV--ISPDSGAKPGDKVS 685
>sp|A0KKF6|SYM_AERHH Methionine--tRNA ligase OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=metG PE=3 SV=1
Length = 677
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++++V LI+K+ P AD LL ++D+G + RQV +G+ NP+DL + ++ N+
Sbjct: 580 IDLRVALIKKAEAVPEADKLLKLQLDIG-GETRQVFAGIKSAYNPEDLEGKLTVMVANLA 638
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P K+R MSEG+VL A+ ++ L P EGAK G R+
Sbjct: 639 PRKMRFGMSEGMVL-AAGPGGKDLWILEPQEGAKPGMRV 676
>sp|P56127|SYM_HELPY Methionine--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=metG PE=3 SV=1
Length = 650
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 253 IQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPG 312
I+VGLI+++ + ++ LL ++D+GE +LRQ++SG+A P+ L + V ++ N+KP
Sbjct: 555 IKVGLIKEAQRIEKSNKLLRLKVDLGEGRLRQIISGIALDYEPESLVGQMVCVVANLKPA 614
Query: 313 KLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIG 346
KL MSEG++L + D+ L+ P KI
Sbjct: 615 KLMGEMSEGMILAVRDSDNL---ALISPTREKIA 645
>sp|Q6MMA3|SYM_BDEBA Methionine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=metG PE=3 SV=1
Length = 687
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
+++++G + ++ + AD LL +ID+GE ++RQ++SG+ P+ L R+V + N+K
Sbjct: 589 VDLRIGQVIEAEEIKEADKLLRLKIDIGEGQIRQIISGIKAAYKPEQLVGRKVLVCVNLK 648
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P K++ MSEG+VL A+ +++ L +GA++G+R+
Sbjct: 649 PRKMKFGMSEGMVL-AAGTGGSDLFVLSADDGAQVGQRV 686
>sp|Q58659|SYM_METJA Methionine--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=metG PE=3 SV=1
Length = 651
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Query: 233 KSSETAAVDKDKELSVSLL---NIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGL 289
K ET +K +++ +S L +++VG + ++ P + LL +D+G+ K RQ+VSG+
Sbjct: 533 KKEETKGGEKMEQIDISYLEKIDLRVGEVVEAEDIPKSKKLLKLMVDLGDEK-RQIVSGI 591
Query: 290 AKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
Y P+DL ++V +I N+KP KL V+SEG++L A+ +D NV L + K G ++
Sbjct: 592 KGYYKPEDLVGKKVIVICNLKPAKLCGVLSEGMIL-AAEDDEGNVSLLTVDKDIKAGSKV 650
>sp|P23395|SYM_THET8 Methionine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=metG PE=1 SV=2
Length = 618
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 263 KHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGL 322
KHP+AD LLV + +G + R VVSG+AK+ P++L ++V L+ N+KP KLR + S+G+
Sbjct: 534 KHPNADRLLVLRLSLGNEE-RTVVSGIAKWYRPEELVGKKVVLVANLKPAKLRGIESQGM 592
Query: 323 VLCASNEDH---TNVEPLLPP 340
+L A + VE +PP
Sbjct: 593 ILAAQEGEALALVTVEGEVPP 613
>sp|Q9ZKG9|SYM_HELPJ Methionine--tRNA ligase OS=Helicobacter pylori (strain J99) GN=metG
PE=3 SV=1
Length = 656
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 253 IQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPG 312
I+VGLI+++ + ++ LL ++D+GE +LRQ++SG+A P+ L + V ++ N+KP
Sbjct: 561 IKVGLIKEAQRIEKSNKLLRLKVDLGENRLRQIISGIALDYEPESLVGQMVCVVANLKPA 620
Query: 313 KLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIG 346
KL MSEG++L + D+ L+ P KI
Sbjct: 621 KLMGEMSEGMILAVRDNDNL---ALISPTREKIA 651
>sp|A1S798|SYM_SHEAM Methionine--tRNA ligase OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=metG PE=3 SV=1
Length = 675
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++++V LI+K+ P AD LL ++D+G ++RQV +G+ NP+DL + ++ N+
Sbjct: 578 IDLRVALIQKAEAVPEADKLLKLQLDIG-GEVRQVFAGIKSAYNPEDLEGKLTVMVANLA 636
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P K+R MSEG+VL A+ ++ L P GAK G R+
Sbjct: 637 PRKMRFGMSEGMVL-AAGPGGKDLFVLEPHAGAKPGMRV 674
>sp|Q5L7I8|SYM_BACFN Methionine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285
/ NCTC 9343) GN=metG PE=3 SV=1
Length = 679
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+I+VG + + K P AD LL +ID G + R +VSG+A++ P++L ++V I N+
Sbjct: 582 LDIRVGTVLECQKVPKADKLLQFKIDDG-LETRTIVSGIAQHYKPEELVGKQVCFIANLA 640
Query: 311 PGKLRDVMSEGLVLCASNED 330
P KL+ ++SEG++L A N D
Sbjct: 641 PRKLKGIVSEGMILSAENND 660
>sp|Q64MP7|SYM_BACFR Methionine--tRNA ligase OS=Bacteroides fragilis (strain YCH46)
GN=metG PE=3 SV=2
Length = 679
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+I+VG + + K P AD LL +ID G + R +VSG+A++ P++L ++V I N+
Sbjct: 582 LDIRVGTVLECQKVPKADKLLQFKIDDG-LETRTIVSGIAQHYKPEELVGKQVCFIANLA 640
Query: 311 PGKLRDVMSEGLVLCASNED 330
P KL+ ++SEG++L A N D
Sbjct: 641 PRKLKGIVSEGMILSAENND 660
>sp|A6LFP0|SYM_PARD8 Methionine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=metG PE=3 SV=1
Length = 679
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 218 TKKAVGDKEAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDV 277
TKKA ++EA + K E D L+I+VG + + K P AD LL ID
Sbjct: 556 TKKA--NEEANYKAKPIRENIEFD-----DFMKLDIRVGTVLECVKVPKADKLLQFRIDD 608
Query: 278 GEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNED 330
G K R +VSG+A++ P++L ++V I N+ P KL+ ++SEG++L A N D
Sbjct: 609 GLEK-RTIVSGIAQHYKPEELVGKQVCFIANLAPRKLKGIVSEGMILSAENFD 660
>sp|A1WRC4|SYM_VEREI Methionine--tRNA ligase OS=Verminephrobacter eiseniae (strain
EF01-2) GN=metG PE=3 SV=1
Length = 691
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++++V LI + LL +D+GE + RQV SG+A C P DL + ++ N+
Sbjct: 589 VDLRVALIVDCAAVAGSTKLLRLTLDIGEGRQRQVFSGIASACQPADLIGKHTVMVANLA 648
Query: 311 PGKLRDVMSEGLVLCASNED---HTNVEPLLPPEGAKIGERI 349
P +L+ +SEG+VL AS+ D + + L P GAK G R+
Sbjct: 649 PRRLKFGVSEGMVLAASHGDEKANPGIYLLAPGPGAKPGMRV 690
>sp|Q9KGK8|SYM_BACHD Methionine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=metG PE=3
SV=1
Length = 660
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 267 ADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCA 326
AD LL ++D+G K RQVVSG+AKY +P DL ++V +TN+KP KLR +S+G++L
Sbjct: 580 ADRLLKIQLDLGYEK-RQVVSGIAKYYSPSDLIGKKVICVTNLKPVKLRGELSQGMILAG 638
Query: 327 SNEDHTNV 334
S D +
Sbjct: 639 SEGDQLRL 646
>sp|Q8PYJ4|SYM_METMA Methionine--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=metG PE=3 SV=2
Length = 715
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 7/170 (4%)
Query: 180 AEKSEAPSNLKSGDAKKGDTALQEKKKSVETEAVDKDKTKKAVGDKEAGQEKKKSSETAA 239
A + A +N K K G+ +E KS + K + D +EK +
Sbjct: 552 ANQRVAAANAKRNGVKGGE---KEPSKSEGMGPSEASKASEKTVDVATAEEKVQVETLPV 608
Query: 240 VDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLT 299
+D + + L+I+VG + + LL E+D+GE K RQ+V+G+A Y P++L
Sbjct: 609 IDYE---DFAKLDIRVGKVLLVEPVKKSKKLLRIEVDIGEEKPRQLVAGMASYYTPEELV 665
Query: 300 NRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
+ V ++ N+KP KL V S G++L A+++ V L+P + K G RI
Sbjct: 666 GKSVIVLANLKPAKLCGVESNGMML-AADDGGAIVAALMPDKEIKSGSRI 714
>sp|A2SRE2|SYM_METLZ Methionine--tRNA ligase OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=metG PE=3 SV=1
Length = 673
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 188 NLKSGDAKKGDTALQEKKKSVETEAV----DKDKTKKAVGDK--EAGQEKKKSSETAAVD 241
N GD K +++K++ E EAV +D KKA G EA E S E +D
Sbjct: 517 NTTLGDVKPLFARIEDKQRE-EMEAVLTKRAEDSKKKAAGKNTMEAVIEPI-SEEIITID 574
Query: 242 KDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNR 301
V+ L+++VG + K+ + P LL ++D+G ++RQ+VSG+A P+++ ++
Sbjct: 575 -----DVAKLDLRVGRVVKAERVPKTTKLLRLQVDIG-TEVRQIVSGIADVYTPEEMVDK 628
Query: 302 RVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKI 345
++ ++ N+KP K R S G++ A E V PEG K+
Sbjct: 629 KIIVVVNLKPAKFRGEESNGMLFAAGEEASLLVPLKDVPEGTKV 672
>sp|Q4L3E7|SYM_STAHJ Methionine--tRNA ligase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=metG PE=3 SV=1
Length = 659
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 265 PSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVL 324
P +D LL +ID+G + RQ+VSG+AK+ P+D+ ++VA++TN+KP KL SEG++L
Sbjct: 577 PKSDKLLKIQIDLGLEQ-RQIVSGIAKFYRPEDIIGKKVAVVTNLKPAKLMGQKSEGMIL 635
Query: 325 CA 326
A
Sbjct: 636 SA 637
>sp|Q46F18|SYM_METBF Methionine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=metG PE=3 SV=1
Length = 710
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 224 DKEAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLR 283
+K G K + E + + + L+I+VG + + + L+ E+D+GE K R
Sbjct: 585 EKAGGAAKPREEEKETLPMIEYEDFAKLDIRVGKVLLAEPVKKSKKLIRIEVDIGEEKTR 644
Query: 284 QVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGA 343
Q+V+GL+ Y P++L + V ++ N+KP KL V S G++L A+++ V L+P +
Sbjct: 645 QLVAGLSSYYAPEELVGKSVIVLANLKPAKLCGVKSNGMML-AADDGGEIVSALMPDKEI 703
Query: 344 KIGERI 349
K G RI
Sbjct: 704 KPGSRI 709
>sp|Q12UQ9|SYM_METBU Methionine--tRNA ligase OS=Methanococcoides burtonii (strain DSM
6242) GN=metG PE=3 SV=1
Length = 684
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 174 VQSTNHAEKSEAPSNLKSGDAKKGDTALQEK---KKSVETEAVDKDKTKKAVGDKEAGQE 230
V TN+ E +E +KSG + + L EK +K+ E EA+ + K+A+ KE G E
Sbjct: 508 VHETNYMEATEL---VKSGTTLEKPSILFEKIEDEKTEEMEAISAARVKEAIA-KENGTE 563
Query: 231 KKKSSETAAVDKDKEL--SVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSG 288
+ + + KD S L+I++G I + + LL ++D+GE + RQ+V+G
Sbjct: 564 EVEEVKEIEEMKDLITFDDFSKLDIRIGTIVSAEAIKKSKKLLKLQVDLGEEETRQIVAG 623
Query: 289 LAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPE 341
L + P+ L ++VA++TN+ P KL V S G+VL + D + LL PE
Sbjct: 624 LKESHEPEQLIGKQVAVLTNLAPAKLCGVESNGMVL--AGVDAADNAILLQPE 674
>sp|Q7MM14|SYM_VIBVY Methionine--tRNA ligase OS=Vibrio vulnificus (strain YJ016) GN=metG
PE=3 SV=1
Length = 690
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 265 PSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVL 324
P AD LL ++D+G ++RQV SG+ NP+DL + ++ N+KP K++ MSEG++L
Sbjct: 607 PKADKLLKFQLDIG-GEMRQVFSGIKAAYNPEDLVGKYTVVVANLKPRKMKFGMSEGMIL 665
Query: 325 CASNEDHTNVEPLLPPEGAKIGERI 349
A+ ++ L P EGA+ G R+
Sbjct: 666 -AAGPGGKDLWILEPHEGAQPGMRV 689
>sp|A1WUY7|SYM_HALHL Methionine--tRNA ligase OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=metG PE=3 SV=1
Length = 679
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 11/147 (7%)
Query: 209 ETEAVDKDKTKKAVGDKEAGQEKKKSSETAAVDK-DKELSV---SLLNIQVGLIRKSWKH 264
+ EAV D +K+ + E+ + + S A D D+ +++ + L+++V +R +
Sbjct: 537 QVEAV-VDASKETLAQSESSEPAQGPSGRLAEDPIDEPITIDDFAKLDLRVAEVRVAEAV 595
Query: 265 PSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVL 324
AD LL E+D+G + RQV +G+ + +P+ L +RV + N+KP K+R SEG+VL
Sbjct: 596 EGADKLLRLELDLG-GETRQVFAGVRQAYSPEQLVGKRVVCVANLKPRKMRFGTSEGMVL 654
Query: 325 CA--SNEDHTNVEPLLPPEGAKIGERI 349
CA ED V P EGA+ G R+
Sbjct: 655 CAGPGGEDLWVVG---PDEGAEPGMRV 678
>sp|Q8D8F2|SYM_VIBVU Methionine--tRNA ligase OS=Vibrio vulnificus (strain CMCP6) GN=metG
PE=3 SV=2
Length = 690
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 265 PSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVL 324
P AD LL ++D+G ++RQV SG+ NP+DL + ++ N+KP K++ MSEG++L
Sbjct: 607 PKADKLLKFQLDIG-GEMRQVFSGIKAAYNPEDLVGKYTVVVANLKPRKMKFGMSEGMIL 665
Query: 325 CASNEDHTNVEPLLPPEGAKIGERI 349
A+ ++ L P EGA+ G R+
Sbjct: 666 -AAGPGGKDLWILEPHEGAQPGMRV 689
>sp|Q48LT7|SYM_PSE14 Methionine--tRNA ligase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=metG PE=3 SV=1
Length = 682
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 230 EKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGL 289
E K +A +D D + + ++++V LI K+ AD LL +D+G+ + R V SG+
Sbjct: 566 ELAKDPLSAEIDFD---AFAAVDLRVALILKAEHVEGADKLLRLTLDIGDEQ-RNVFSGI 621
Query: 290 -AKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGER 348
+ Y NP +L R +I N+KP K+R +SEG+V+ A+ + L P GAK G+R
Sbjct: 622 KSAYPNPSELEGRLTMMIANLKPRKMRFGISEGMVM-AAGPGGEEIYLLSPDSGAKPGQR 680
Query: 349 I 349
I
Sbjct: 681 I 681
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,216,464
Number of Sequences: 539616
Number of extensions: 6223399
Number of successful extensions: 24437
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 405
Number of HSP's that attempted gapping in prelim test: 22293
Number of HSP's gapped (non-prelim): 2041
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)