RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015335
(408 letters)
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain,
OB-fold, tRNA synthetase complex, RNA binding protein;
1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Length = 171
Score = 210 bits (536), Expect = 2e-67
Identities = 74/165 (44%), Positives = 110/165 (66%), Gaps = 4/165 (2%)
Query: 246 LSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVAL 305
+ VS L++++G I + KHP ADSL VEE+DVGE R VVSGL + + + NR V L
Sbjct: 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60
Query: 306 ITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLNPK 365
+ N+KP K+R V+S+ +V+CAS+ + +E L PP G+ G+RI+F G+P++ LNPK
Sbjct: 61 LCNLKPAKMRGVLSQAMVMCASSPEK--IEILAPPNGSVPGDRITFDAFPGEPDKELNPK 118
Query: 366 KKQLEKITPNLFTDDKGVATFKGIPFM-TSAGPCTS-SIPKASIK 408
KK E+I P+L T+D+ VAT+KG+PF G C + ++ + IK
Sbjct: 119 KKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 163
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo
sapiens} SCOP: b.40.4.4
Length = 172
Score = 205 bits (524), Expect = 2e-65
Identities = 72/169 (42%), Positives = 106/169 (62%), Gaps = 3/169 (1%)
Query: 242 KDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNR 301
+ +E+ S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ ++L +R
Sbjct: 1 EPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDR 60
Query: 302 RVALITNVKPGKLRDVMSEGLVLCASNED-HTNVEPLLPPEGAKIGERISFSGID-GKPE 359
V ++ N+KP K+R V S+G++LCAS E + VEPL PP G+ GE + G + G+P+
Sbjct: 61 LVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPD 120
Query: 360 EVLNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAGPCTS-SIPKASI 407
E L PKKK EK+ + ++ +A +K FMT G + S+ +I
Sbjct: 121 EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 169
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding
fold, OB fold, beta- barrel; 1.87A {Escherichia coli}
SCOP: b.40.4.4 PDB: 3ers_X
Length = 111
Score = 115 bits (290), Expect = 1e-31
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L ++VG I + +H +AD L + ++DVG+ Q V+ L Y + ++L + V ++ N++
Sbjct: 12 LEMRVGKIVEVKRHENADKLYIVQVDVGQKT-LQTVTSLVPYYSEEELMGKTVVVLCNLQ 70
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
K+R SE ++LCA +D + L P G R+
Sbjct: 71 KAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 110 bits (278), Expect = 1e-26
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 181 EKSEAPSNLKSGDAKKGDTALQEKKKSVETEAVDKDKTKKAVGDKEAGQEKKKSSETAAV 240
++ + K + + K K + + K +
Sbjct: 551 DQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEK 610
Query: 241 DKDKELSVS-----LLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNP 295
+ KE+ V L+++VG I + HP+AD L V ++D+G+ R +V+GL KY P
Sbjct: 611 KEGKEMYVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEV-RTLVAGLKKYYKP 669
Query: 296 DDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
++L NR V ++ N++P KLR + S+G++L A + + V L+P + K+G ++
Sbjct: 670 EELLNRYVVVVANLEPKKLRGIGSQGMLLAADDGE--RVALLMPDKEVKLGAKV 721
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta
barrel, dimerization domain, ligase; 2.01A {Pyrococcus
abyssi} SCOP: b.40.4.4
Length = 107
Score = 99 bits (250), Expect = 5e-26
Identities = 37/99 (37%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+++VG I + HP+AD L V ++D+G+ R +V+GL KY P++L NR V ++ N++
Sbjct: 11 LDLRVGKIIEVKDHPNADKLYVVKVDLGDEV-RTLVAGLKKYYKPEELLNRYVVVVANLE 69
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KLR + S+G++L A + + V L+P + K+G ++
Sbjct: 70 PKKLRGIGSQGMLLAADDGE--RVALLMPDKEVKLGAKV 106
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide,
oligosaccharide-binding fold, OB-fold, beta-barrel, RNA
binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Length = 111
Score = 90.3 bits (225), Expect = 2e-22
Identities = 27/100 (27%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++++V + + + ++ LL + +G+ + R VV+G+AKY P++L +++ ++ N+K
Sbjct: 15 VDLRVAKVLSAERVEGSEKLLKLTLSLGDEE-RTVVAGIAKYYTPEELVGKKIVIVANLK 73
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERIS 350
P K+ + S+G++L AS+ + N+ ++P K G ++S
Sbjct: 74 PRKIFGIESQGMILAASDGE--NLSVIVPDRDVKEGAKLS 111
>2cwp_A Metrs related protein; structural GEN riken structural
genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus
horikoshii}
Length = 112
Score = 88.0 bits (219), Expect = 1e-21
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++VGL++K+ K L+ +D G + R +V+G+A P++L ++ + N+K
Sbjct: 15 FQMKVGLVKKAEKIKRTKKLIKLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIFVVNLK 73
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P K V S+G+++ A ED V + PE +G R+
Sbjct: 74 PKKFSGVESQGMLILAETED-GKVYLIPVPEEVPVGARV 111
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer,
hydrophobic cavity, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
b.40.4.4
Length = 109
Score = 82.6 bits (205), Expect = 1e-19
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 251 LNIQVGLIRKSWKHPSAD-SLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNV 309
L+++VG + ++ H A +D+G ++Q + + + P+DL R V N+
Sbjct: 10 LDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNL 69
Query: 310 KPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
++ +SE LVL +E V L P +G ++
Sbjct: 70 GAKRVAGFLSEVLVLGVPDEAG-RVVLLAPDREVPLGGKV 108
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for
infectious diseases, center for structural GENO
infectious diseases; 1.50A {Bacillus anthracis}
Length = 112
Score = 82.2 bits (204), Expect = 2e-19
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 251 LNIQVGLIRKSWKHPSAD-SLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNV 309
L++++G + + + A + EID GE ++Q + + K NP+DL +++ + N
Sbjct: 13 LDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNF 72
Query: 310 KPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERIS 350
P ++ SE LVL E +V L P G +IS
Sbjct: 73 PPKRVAGFKSEVLVLGGVPEAG-DVVLLQPNMELPNGTKIS 112
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer,
protein secretio; 1.55A {Agrobacterium tumefaciens str}
Length = 116
Score = 77.6 bits (192), Expect = 9e-18
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 251 LNIQVGLIRKSWKHPSAD-SLLVEEIDVG-EAKLRQVVSGLAKYCNPDDLTNRRVALITN 308
++I+VG I ++ P A + +ID G E +++ + + + P+ L R+V + N
Sbjct: 16 VDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVN 75
Query: 309 VKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P ++ SE L L ++ + ++ GE++
Sbjct: 76 FPPRQIGPFRSEVLTLGFADANG-DIVLAAVERPVPNGEKM 115
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid;
beta barrel, OB fold, homodimer, protein secretio; HET:
CIT; 1.65A {Agrobacterium tumefaciens str}
Length = 131
Score = 76.9 bits (190), Expect = 3e-17
Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 223 GDKEAGQEKKKSSETAAVDKDKELSV---SLLNIQVGLIRKSWKHPSAD-SLLVEEIDVG 278
G +K+ + A + E+S ++I+VG I ++ P A + +ID G
Sbjct: 1 GSHMVPGQKQHYVQPTAANSG-EISYADFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFG 59
Query: 279 -EAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPL 337
E +++ + + + P+ L R+V + N P ++ SE L L ++ + ++
Sbjct: 60 PEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADANG-DIVLA 118
Query: 338 LPPEGAKIGERI 349
GE++
Sbjct: 119 AVERPVPNGEKM 130
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding
fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Length = 113
Score = 76.0 bits (188), Expect = 3e-17
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 251 LNIQVGLIRKSWKHPSAD-SLLVEEIDVG-EAKLRQVVSGLAKYCNPDDLTNRRVALITN 308
L+I+ G I K+ + P A + ID G E ++Q + + K P+ L N++V + N
Sbjct: 13 LDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVN 72
Query: 309 VKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P ++ SE LVL +V L P + G +I
Sbjct: 73 FPPRRIAGFKSEVLVLGGIPGQG-DVVLLQPDQPVPNGTKI 112
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A
{Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A
Length = 209
Score = 74.5 bits (182), Expect = 1e-15
Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%)
Query: 29 DFSSNAAEKDIKTLYSDILKSSGKSSNDEVMKWIEFAES--FPADSKACFDVLIKLNEEL 86
D ++ I + ++ I + K +V KW+ A+ + L L+ +L
Sbjct: 67 DDATEDVFNKITSKFAAIFDNGDKE---QVAKWVNLAQKELVIKNFAKLSQSLETLDSQL 123
Query: 87 ATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEALGDLFG 146
++ +LG GL+ S ADV + A+ S + + + +V RW ++ G+
Sbjct: 124 NLRTFILG-GLKYSAADVACWGALRSNGMCGSIIKNKVDVNVSRWYTLLEMDPIFGEAHD 182
Query: 147 TISLEKPGFEPPLHGAKSAVDSNAK 171
+S + + K A
Sbjct: 183 FLSKSLLELKKSANVGKKKETHKAN 207
>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein
biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear
protein, RNA-binding protein; HET: MSE; 2.0A {Homo
sapiens}
Length = 174
Score = 68.6 bits (168), Expect = 6e-14
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 57 EVMKWIEFAES--FPADSKA-CFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSF 113
V +W+E+ + SK +L+ LN L K L G + AD++++ +H F
Sbjct: 70 MVQQWLEYRVTQVDGHSSKNDIHTLLMDLNSYLEDKVYLTGY--NFTLADILLYYGLHRF 127
Query: 114 VVGLANLDQGKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLH 160
+V L ++ K +V RW +IQ + ++ K H
Sbjct: 128 IVDLTVQEKEKYLNVSRWFCHIQHYPGIRQHLSSVVFIKNRLYTNSH 174
>2e8g_A Hypothetical protein PH0536;
oligonucleotide/oligosaccharide-binding fold,
alpha-helices bundle, structural genomics, NPPSFA; 1.70A
{Pyrococcus horikoshii}
Length = 241
Score = 63.9 bits (155), Expect = 8e-12
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++I VG + KHPSAD LLV +++GE + VV+ + VAL+
Sbjct: 136 VDIVVGEVMSVGKHPSADRLLVTNVNIGERAV-TVVTN-DLTVKEGNR--VAVALL---P 188
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEP--LLPPEGAKIGE 347
P ++SEG+ L A NV+ P+G +
Sbjct: 189 PRNFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKGIPLEA 227
>2hqt_A GU4 nucleic-binding protein 1; GST-fold, biosynthetic protein, RNA
binding; 1.90A {Saccharomyces cerevisiae} SCOP: a.45.1.2
PDB: 2hrk_B 2hsm_B 2hsn_B
Length = 124
Score = 58.5 bits (141), Expect = 7e-11
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 77 DVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGL------ANLDQGKMPHVMR 130
L +LN L + ++ L + DV VF + L H++R
Sbjct: 44 PHLDQLNLVLRDNTFIVST-LYPTSTDVHVFEVALPLIKDLVASSKDVKSTYTTYRHILR 102
Query: 131 WMDYIQSKEALGD 143
W+DY+Q+ +
Sbjct: 103 WIDYMQNLLEVSS 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 63/415 (15%), Positives = 119/415 (28%), Gaps = 102/415 (24%)
Query: 5 GSKNP-TRKQLIVSILCKHLSLDHKDFSSNAAEKDIKTLYSDILKSSGKSSNDEVMKWIE 63
SK+ + + L + F + K L S I K+ + + +IE
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIE 114
Query: 64 FAESFPADSKACFDVLIKLN---EELATKSVLLGNGLR--TSEADVIVFSAVH------- 111
+ D+ V K N + K L L +V+ +
Sbjct: 115 QRDRLYNDN----QVFAKYNVSRLQPYLK---LRQALLELRPAKNVL----IDGVLGSGK 163
Query: 112 SFVVGLANLD---QGKMPHVMRWMDYIQSK------EALGDLFGTI-----SLEKPGFEP 157
++V L Q KM + W++ E L L I S
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 158 PLHGAKSAVDSNAKKTVQSTNHAEKS-------EAPSNLKSGDAK-KGDTALQEKKKSVE 209
L ++ + ++ ++S + E + + + K L + K V
Sbjct: 224 KLR--IHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCK--ILLTTRFKQV- 277
Query: 210 TEAVDKDKTKK-AVGDKEAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWK--HPS 266
T+ + T ++ + K L + L+ + + + +P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEV---------KSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 267 ADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCA 326
S++ E I G A K+ N D LT + + ++P + R + V
Sbjct: 329 RLSIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-- 381
Query: 327 SNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVL-----NPKKKQLEKITPNL 376
P A I P +L + K + + L
Sbjct: 382 -------------PPSAHI------------PTILLSLIWFDVIKSDVMVVVNKL 411
Score = 31.0 bits (69), Expect = 0.95
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 7 KNPTRKQLIVSILCKHLSLDHKDFSSNAAEKDIKTLYSDILKSSGKSSNDEV 58
+P ++L+ +IL DF E I + Y+D+L+ + + ++ +
Sbjct: 537 NDPKYERLVNAIL---------DFLPKIEENLICSKYTDLLRIALMAEDEAI 579
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 52.9 bits (128), Expect = 1e-07
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 39/178 (21%)
Query: 213 VDKDKTKKAVGDK--EAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSL 270
V+ A+ ++ AG E VD + ++ S + VG + + +HP+AD L
Sbjct: 12 VNPAIDSDALANQITMAGLE---------VDGVEPVAGSFHGVVVGEVVECAQHPNADKL 62
Query: 271 LVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALI-------TNVKPGKLRDVMSEGLV 323
V +++VG +L +V G A C VA I +K KLR SEG+
Sbjct: 63 RVTKVNVGGDRLLDIVCG-APNCRQGLRV--AVATIGAVLPGDFKIKAAKLRGEPSEGM- 118
Query: 324 LCASNE-----DHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLNPKKKQLE-KITPN 375
LC+ +E DH+ + L P A IG I E L +E +TPN
Sbjct: 119 LCSFSELGISDDHSGIIEL--PADAPIGTDIR---------EYLKLDDNTIEISVTPN 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 4e-07
Identities = 56/389 (14%), Positives = 110/389 (28%), Gaps = 151/389 (38%)
Query: 8 NPTRKQLIVSI--LCKHLSLDHKDFSSNAAEKDIKTLYSDILKSSGKSSNDEVMKWIEFA 65
+ LI L D +++ L +++W+E
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEK---------VFTQGL---------NILEWLENP 222
Query: 66 ESFPADS----------------KACFDVLIKLN----EELATKSVLLGNGLRTSEADVI 105
+ P A + V KL EL + G ++
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL----KGATGHSQGLV 278
Query: 106 VFSAV------HSFVVGLANLDQGKMPHVMRWMDYI--QSKEALGDLFGTISLEKPGFEP 157
A+ SF ++ + + + +I + EA + SL P
Sbjct: 279 TAVAIAETDSWESF---FVSVRK-----AITVLFFIGVRCYEA----YPNTSL------P 320
Query: 158 PLHGAKSAVDSNAKKTVQSTNHAEKSEAPSNLKSGDAKKGDTALQEKKKSVETEAVDKDK 217
P S ++ S + E +P L S+ +
Sbjct: 321 P-----SILE-------DSLENNEGVPSP-------------ML-----SI------SNL 344
Query: 218 TKKAVGDKEAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDV 277
T++ V + + + + K++ +SL+N A +L+V
Sbjct: 345 TQEQV-------QDYVNKTNSHLPAGKQVEISLVN-------------GAKNLVV----S 380
Query: 278 GEAK-LRQVVSGLAKYCNPDDLTNRRVALITNVKPG---KLRDVMSEGLVLCASNED--H 331
G + L + L K P L R+ P KL+ + L + + H
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRI-------PFSERKLK-FSNRFLPVAS----PFH 428
Query: 332 TNVEPLLPPEGAKIGERISFSGIDGKPEE 360
+ LL P I + + + + ++
Sbjct: 429 S---HLLVPASDLINKDLVKNNVSFNAKD 454
Score = 48.5 bits (115), Expect = 3e-06
Identities = 70/427 (16%), Positives = 122/427 (28%), Gaps = 154/427 (36%)
Query: 20 CKHLSLDHKDF------SSN---AAE--KD--IKTLYSDILKSSGKSSNDE-------VM 59
+ L+L H + A ++ K L + G +++DE V
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP---TEGFAADDEPTTPAELVG 62
Query: 60 KWIEF-AESFPADSKACFDVLIK--LNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVG 116
K++ + + FD ++ L E L GN D+ H+
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTE--FENCYLEGN-------DI------HALAAK 107
Query: 117 LANLDQGKMPHVMRWM-DYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTV- 174
L + + + +YI ++ +K L ++ + NA+
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAK-----RPFDKKS-NSAL--FRAVGEGNAQLVAI 159
Query: 175 ---QSTNHAEKSEAPSNLKSGDAKKGDTALQEKKKSVETEAVDKDKTKKAVGD--KEAGQ 229
Q D +E + +T VGD K + +
Sbjct: 160 FGGQGNT-------------------DDYFEELRDLYQTY-------HVLVGDLIKFSAE 193
Query: 230 EKKKSSETAAVDKDKELSVSLLNIQVGLIRKSW-----KHPSADSLLVEEIDVGEAKLRQ 284
+ T D +K + LNI W P D LL I L
Sbjct: 194 TLSELIRTTL-DAEKVFTQG-LNI------LEWLENPSNTPDKDYLLSIPISC---PLIG 242
Query: 285 VVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMS------EGLV---LCA---SNED-- 330
V+ LA Y A + PG+LR + +GLV A S E
Sbjct: 243 VIQ-LAHYVV--------TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 331 ----------------------HTNVEPLLPPEGAKIGERISFSGIDGKPE---EVLNPK 365
+T++ P + + + E G P + N
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--------GVPSPMLSISNLT 345
Query: 366 KKQLEKI 372
++Q++
Sbjct: 346 QEQVQDY 352
Score = 30.8 bits (69), Expect = 0.94
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 25/122 (20%)
Query: 247 SVSL--LNIQVGLIRKSWKHPSADSLLVEEI-DVGEAKLRQVVSGLAKYCNPDD------ 297
+ S L + G + P+A + ++ + L + G A DD
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA----DDEPTTPA 58
Query: 298 -LTNRRVALITNV----KPGKLRDVMSEGL------VLCASNEDHTNVEPLLPPEGAKIG 346
L + + ++++ K G+ V++ L L N+ H LL +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-GNDIHALAAKLLQENDTTLV 117
Query: 347 ER 348
+
Sbjct: 118 KT 119
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein
structure initiative; 2.70A {Staphylococcus
saprophyticus subsp}
Length = 199
Score = 47.7 bits (114), Expect = 1e-06
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 252 NIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALI----- 306
VG + KHP AD L V +DV KL Q+V G A VA +
Sbjct: 92 KFVVGYVETKDKHPDADKLSVLSVDVATEKL-QIVCG-APNVEAGQKV--VVAKVGAVMP 147
Query: 307 --TNVKPGKLRDVMSEGLVLCASNE----DHTNVEPLLP-PEGAKIGERI 349
+K +LR V S G+ +C+ E + + ++ + +G+
Sbjct: 148 SGMVIKDAELRGVASSGM-ICSMKELGLPNAPQEKGIMVLSDDYTVGQSF 196
>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis,
GST-like, translation; 3.00A {Saccharomyces cerevisiae}
SCOP: a.45.1.1 c.47.1.5
Length = 219
Score = 43.2 bits (102), Expect = 6e-05
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 32/129 (24%)
Query: 57 EVMKWIEFAES--FPADSKACF---------------------DVLIKLNEELATKSVLL 93
++++W A S + ++ L + L
Sbjct: 95 QIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLA 154
Query: 94 GNGLRTSEADVIVFSAVHS---FVVGLANLDQGKMPHVMRWMDYIQSKEALGDLFGTISL 150
S AD++ S + G + P ++RW + +++ L D +
Sbjct: 155 TE--NISLADLVAASIFTRYFESLFGTEWRA--QHPAIVRWFNTVRASPFLKDEYKDFKF 210
Query: 151 -EKPGFEPP 158
+KP PP
Sbjct: 211 ADKP-LSPP 218
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 42.5 bits (101), Expect = 2e-04
Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 45/182 (24%)
Query: 213 VDKDKTKKAVGDK--EAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSL 270
VD + + ++ G E VD + S + N+ VG I + S
Sbjct: 12 VDAGVKVEDLAERITRTGIE---------VDNMIDYSKDIKNLVVGYI----QSKEKGSG 58
Query: 271 LVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALI-------TNVKPGKLRDVMSEGLV 323
+ ++D+GE + Q+V G A + VA + +K KLR SEG+
Sbjct: 59 NICQVDIGEEEPVQIVCG-APNVDAGQHV--IVAKVGGRLPGGIKIKRAKLRGERSEGM- 114
Query: 324 LCASNE-----DHTNVEP----LLPPEGAKIGERISFSGIDGKPEEVLNPKKKQLE-KIT 373
+C+ E + + P + G L + +E +T
Sbjct: 115 ICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDAL---------TALYLNDQVMEFDLT 165
Query: 374 PN 375
PN
Sbjct: 166 PN 167
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 40.2 bits (95), Expect = 0.001
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 36/140 (25%)
Query: 252 NIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALI----- 306
+ + ++ P L +D G +VVSG A+ +AL
Sbjct: 44 GVVFARVLEAHPIP-GTRLKRLVLDAGR--TVEVVSG-AENARKGIGV--ALALPGTELP 97
Query: 307 ---TNVKPGKLRDVMSEGLVLCASNE-----DHTNVEPL--LPPEGAKIGERISFSGIDG 356
V ++ V S G+ + E L P + G +S + +
Sbjct: 98 GLGQKVGERVIQGVRSFGM-ALSPRELGVGEYG---GGLLEFPEDALPPGTPLSEAWPE- 152
Query: 357 KPEEVLNPKKKQLE-KITPN 375
E V L+ ++TPN
Sbjct: 153 --EVV-------LDLEVTPN 163
>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism,
PSI2, NYSGXRC, structural genomics, protein structure
initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}
Length = 225
Score = 36.2 bits (84), Expect = 0.012
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 73 KACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWM 132
+ L A + L+G + AD+ + + A L+ P V W+
Sbjct: 147 RRPLARL---ERHFAAEDYLVGGRF--TVADLNLAETLRYGQAHPALLE--PFPAVAAWL 199
Query: 133 DYIQSKEA 140
D QS+ A
Sbjct: 200 DRCQSRPA 207
>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification,
transferase-transfera inhibitor complex; HET: GGL CYW;
2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*
Length = 209
Score = 35.7 bits (83), Expect = 0.015
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 70 ADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVM 129
K +V L L G+ L S AD+ S PHV
Sbjct: 136 EKLKKVLEVY---EARLTKCKYLAGDFL--SLADLNHVSVTLCLFATPYASVLDAYPHVK 190
Query: 130 RWMDYIQSKEA 140
W + + +
Sbjct: 191 AWWSGLMERPS 201
>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea
mays} SCOP: a.45.1.1 c.47.1.5
Length = 216
Score = 34.2 bits (79), Expect = 0.047
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 17/93 (18%)
Query: 70 ADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVM 129
DV LA L G+ + AD S + PHV
Sbjct: 137 EQLAKVLDVY---EAHLARNKYLAGDEF--TLADANHASYLLYLSKTPKAGLVAARPHVK 191
Query: 130 RWMDYIQS----KEALGDLFGTISLEKPGFEPP 158
W + I + ++ + + P PP
Sbjct: 192 AWWEAIVARPAFQKTVAAI--------PLPPPP 216
>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX;
2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5
PDB: 1bx9_A*
Length = 211
Score = 33.8 bits (78), Expect = 0.059
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 70 ADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVM 129
A DV L L G + D+ A+ + + P V
Sbjct: 141 AKLAKVLDVY---EARLKEFKYLAGETF--TLTDLHHIPAIQYLLGTPTKKLFTERPRVN 195
Query: 130 RWMDYIQSKEA 140
W+ I + A
Sbjct: 196 EWVAEITKRPA 206
>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia
xenovorans} PDB: 2gdr_A*
Length = 203
Score = 33.4 bits (77), Expect = 0.074
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 63 EFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQ 122
E+ + + +L LLG+ L S AD+ +F + N+D
Sbjct: 120 EWKNAVRQSLNTRLGQV---ARQLEHAPYLLGDQL--SVADIYLFVVLG--WSAYVNIDL 172
Query: 123 GKMPHVMRWMDYIQSKEA 140
P + + + +EA
Sbjct: 173 SPWPSLQAFQGRVGGREA 190
>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating,
A putative oxidoreduct; HET: GSH; 2.50A {Proteus
mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*
Length = 203
Score = 32.9 bits (76), Expect = 0.099
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 63 EFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQ 122
+ K+ F + N+ L+ + + G+ + AD +F+ LD
Sbjct: 120 SYLPVVKNKLKSKFVYI---NDVLSKQKCVCGDHF--TVADAYLFTLSQWA--PHVALDL 172
Query: 123 GKMPHVMRWMD 133
+ H+ ++
Sbjct: 173 TDLSHLQDYLA 183
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.17
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 202 QEKKKSVETEAVDK--DKTKKAVGDKEAGQEKKKSSETAAVDKDKE 245
Q + + E E++ K ++ +K + + +A + + KD E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A
{Xylella fastidiosa}
Length = 207
Score = 31.8 bits (73), Expect = 0.25
Identities = 6/75 (8%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 66 ESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKM 125
++ + + + L + L S AD ++ + +D +
Sbjct: 129 DNARQKLRVLYQRA---DAHLKHHNWLANGQR--SGADAYLYVTLRWA--KKVGVDLSSL 181
Query: 126 PHVMRWMDYIQSKEA 140
+ + + +++
Sbjct: 182 DALSAFFERMEADPG 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.25
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 18/46 (39%)
Query: 365 KKKQLEKITPNL--FTDDKGVATFKGIPFMTSAGPCTSSIPKASIK 408
+K+ L+K+ +L + DD SA P +I KA+++
Sbjct: 18 EKQALKKLQASLKLYADD-------------SA-PAL-AI-KATME 47
Score = 31.1 bits (69), Expect = 0.35
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 138 KEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTVQ 175
K+AL L ++ L P L A+ A T++
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-----AI--KA--TME 47
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 31.8 bits (73), Expect = 0.27
Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 102 ADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
AD+ + +H + ++ P + + + A
Sbjct: 167 ADLFLAPQIHG-AINRFQINMEPYPTLAKCYESYNELPA 204
>4g9h_A Glutathione S-transferase; GST, enzyme function initiative,
structural genomics; HET: GSH; 2.10A {Yersinia pestis}
Length = 211
Score = 31.8 bits (73), Expect = 0.29
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Query: 64 FAESFPADSKA--------CFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVV 115
F + P + K F + + LA LLG S AD +F+
Sbjct: 116 FNPNTPDEYKTIVRERLDKQFSYV---DSVLAEHDYLLGKKF--SVADAYLFTVSRWA-- 168
Query: 116 GLANLDQGKMPHVMRWMDYIQSKEA 140
NL + H+ ++M + + A
Sbjct: 169 NALNLQIKERSHLDQYMARVAERPA 193
>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein
structure initiative, N SGX research center for
structural genomics; HET: GSH; 1.75A {Pseudomonas
fluorescens}
Length = 210
Score = 31.8 bits (73), Expect = 0.30
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 66 ESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKM 125
DV+ ++L+ L+G S AD+ +++ H V D +
Sbjct: 129 LKLHKRGYKALDVM---EKQLSRTPYLVGEHY--SIADIALYAYTH--VADEGGFDLSRY 181
Query: 126 PHVMRWMDYIQSKEA 140
P + WM +QS
Sbjct: 182 PGIQAWMQRVQSHPR 196
>1e6v_C Methyl-coenzyme M reductase I gamma subunit; biological
methanogenesis, NI-enzyme, oxidoreductase, NI enzyme;
HET: F43 TP7; 2.70A {Methanopyrus kandleri} SCOP:
d.58.31.1
Length = 258
Score = 31.5 bits (71), Expect = 0.48
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 300 NRRVALITNVKPGKLRDVMSEGLVLC----ASNEDHTNVEPLL---------------PP 340
NRR + N + KLR++ E +V E++ +V P L P
Sbjct: 18 NRRKYMNPNYELKKLREIPDEDIVRLMGHREPGEEYPSVHPPLEEMEEPECPIRELVEPT 77
Query: 341 EGAKIGERISF 351
EGAK G+RI +
Sbjct: 78 EGAKAGDRIRY 88
>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A
{Bombyx mori}
Length = 216
Score = 31.0 bits (71), Expect = 0.50
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 21/113 (18%)
Query: 63 EFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQ 122
E +S D + L N+ L + + + AD +++++ S + D
Sbjct: 125 EIKQSLKDDLNSTLSFL---NQFLEKTKWVAADHP--TIADTSIYASMSSILAV--GWDI 177
Query: 123 GKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTVQ 175
P++ RW+ PG GA++ D+ K Q
Sbjct: 178 SSFPNIQRWIKDCL--------------LLPGAPENEDGARTFGDAVKKNIKQ 216
>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione
disulfide, disulfide bond oxidoreductase; HET: GDS;
2.30A {Escherichia coli}
Length = 215
Score = 31.0 bits (71), Expect = 0.56
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 62 IEFAES-FPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANL 120
I +A + +++ + VL N+ L L G S AD+ + V+++ +L
Sbjct: 126 IPYAIERYQVETQRLYHVL---NKRLENSPWLGGENY--SIADIACWPWVNAWTRQRIDL 180
Query: 121 DQGKMPHVMRWMDYIQSKEA 140
P V W + I+S+ A
Sbjct: 181 A--MYPAVKNWHERIRSRPA 198
>3sqg_C Methyl-coenzyme M reductase, gamma subunit; anaerobic methane
oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE
P6G; 2.10A {Uncultured archaeon}
Length = 279
Score = 31.1 bits (70), Expect = 0.60
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 300 NRRVALITNVKPGKLRDVMSEGLVLC----ASNEDHTNVEPLL---------------PP 340
NRR + + K KLRD+ E +V A E++ ++ P L P
Sbjct: 14 NRRNYMDPSYKLEKLRDIPEEDIVRLLAHRAPGEEYKSIHPPLEEMEEPDCAVRQIVKPT 73
Query: 341 EGAKIGERISF 351
EGA G+RI +
Sbjct: 74 EGAAAGDRIRY 84
>1hbn_C Methyl-coenzyme M reductase I gamma subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: d.58.31.1
PDB: 1hbm_C* 1hbo_C* 1hbu_C* 3m1v_C* 3m2r_C* 3m2u_C*
3m2v_C* 3m30_C* 3m32_C* 3pot_C* 1mro_C*
Length = 248
Score = 31.0 bits (70), Expect = 0.60
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 19/71 (26%)
Query: 300 NRRVALITNVKPGKLRDVMSEGLVLC----ASNEDHTNVEPLL---------------PP 340
NRR + KLR++ E +V A E++ +V P L P
Sbjct: 13 NRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPI 72
Query: 341 EGAKIGERISF 351
+GAK G+R+ +
Sbjct: 73 DGAKAGDRVRY 83
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 30.4 bits (69), Expect = 0.98
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 159 LHGAKSAVDSNAKKTVQSTNHAEKSEAPSNLKSGDAKKGDTALQEKKK 206
G K + SN N E +E+ G+ K L K++
Sbjct: 229 CLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQR 276
>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1,
NPPSFA, national project protein structural and
functional analyses; HET: GSH; 1.40A {Mus musculus} PDB:
2cz3_A 1fw1_A*
Length = 223
Score = 29.9 bits (68), Expect = 1.2
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 102 ADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
ADV + V + +D P + + + E
Sbjct: 169 ADVCLVPQVANAERF--KVDLSPYPTISHINKELLALEV 205
>4ecj_A Glutathione S-transferase; transferase-like protein, transcription
regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa}
PDB: 4eci_A*
Length = 244
Score = 29.9 bits (68), Expect = 1.2
Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 62 IEFAES-FPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFS--AVHSFVVGLA 118
++ A + +++ ++VL + L L G+ S AD+ + +H + +
Sbjct: 124 LQGAIDRYQHETRRLYEVL---DGRLGEAEYLAGD---YSIADIATYPWVRIHDW----S 173
Query: 119 NLDQGKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTV-QST 177
+ + ++ RW+ I+++ A+ G + + ++ + A+ QS
Sbjct: 174 GVAVDGLDNLQRWIAAIEARPAV--QRGLLVPRREKEGDDAIRTAQSMLTRAENLYFQSH 231
Query: 178 NHAEKSEAP 186
+H P
Sbjct: 232 HHHHHWSHP 240
>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid,
bacterial, biodegradation, fumaryl pyruvate; HET: TGG;
1.3A {Ralstonia SP} PDB: 2jl4_A*
Length = 214
Score = 29.6 bits (67), Expect = 1.2
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 102 ADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
AD + V S +D P + +A
Sbjct: 165 ADCYLVPQVESARRF--QVDLTPYPLIRAVDAACGELDA 201
>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase
homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}
Length = 288
Score = 30.0 bits (68), Expect = 1.3
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 62 IEFAES-FPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFS-----AVHSFVV 115
IE+A + F ++K DVL +++LA + G+ + AD+ ++ +
Sbjct: 172 IEYAINRFTMEAKRLLDVL---DKQLAQHKFVAGDEY--TIADMAIWPWFGNVVLGGVYD 226
Query: 116 GLANLDQGKMPHVMRWMDYIQSKEA 140
LD G HV RW + + A
Sbjct: 227 AAEFLDAGSYKHVQRWAKEVGERPA 251
>4exj_A Uncharacterized protein; transferase-like protein, transcription
regulation, transfer structural genomics; 1.64A
{Lodderomyces elongisporus nrrl yb-4239}
Length = 238
Score = 30.0 bits (68), Expect = 1.3
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 82 LNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQG-----KMPHVMRWMDYIQ 136
+ +L+ + +G+ + D+ H L N P+V +W
Sbjct: 146 METKLSGRDWFVGDKF--TIVDIAFLVGEHRRRERLHNSPIWIDLKENFPNVEKWFQRAI 203
Query: 137 SKEA 140
+ E
Sbjct: 204 AFEN 207
>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification;
HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A
Length = 230
Score = 29.6 bits (67), Expect = 1.5
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 82 LNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
L+ L + L G S AD+++ + L +++ +++ +++ A
Sbjct: 160 LSAWLGDREWLEG---SFSAADILMICVLRRLE-SSGILKD--YGNLLAYVERGKARPA 212
>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.30A {Legionella pneumophila
subsp}
Length = 222
Score = 29.3 bits (66), Expect = 1.7
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 102 ADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
ADV + V++ + D P + +Y + A
Sbjct: 167 ADVCLIPQVYNAHRF--HFDMASYPIINEINEYCLTLPA 203
>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH,
mosquito, detoxification, xenobiotics; HET: GTS; 2.50A
{Anopheles cracens} SCOP: a.45.1.1 c.47.1.5
Length = 218
Score = 29.1 bits (66), Expect = 2.0
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 4/56 (7%)
Query: 82 LNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQS 137
L N + AD+ + V D P V W+ +
Sbjct: 139 FEAMLKQYQWSAANHF--TIADIALCVTVSQIEAF--QFDLHPYPRVRAWLLKCKD 190
>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics,
protein structure initiative, nysgxrc; 2.04A
{Rhodopseudomonas palustris}
Length = 225
Score = 29.1 bits (66), Expect = 2.2
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 66 ESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKM 125
E + A V+ L T L + AD+ ++ H + D
Sbjct: 130 EDWLERGYAALQVM---ENHLKTNDYFAAGQL--TIADIALYGYTHVA--DQCDFDLSTF 182
Query: 126 PHVMRWMDYIQSKEA 140
P V W+ ++
Sbjct: 183 PAVNAWLRRVEQTPG 197
>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold,
metal transport; 1.70A {Drosophila melanogaster}
Length = 260
Score = 28.9 bits (64), Expect = 2.5
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 64 FAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQ- 122
+ A + A L K+N+ L+ ++ G D + + V
Sbjct: 136 LVKKDEAKNNALLSHLRKINDHLSARNTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDF 195
Query: 123 ---GKMPHVMRWMDYIQSKEA 140
+ + R+M ++ +A
Sbjct: 196 EIPTHLTALWRYMYHMYQLDA 216
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 29.2 bits (66), Expect = 2.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 378 TDDKGVATFKGIPF 391
++GV +KGIP+
Sbjct: 16 EMNEGVFVWKGIPY 29
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 29.2 bits (66), Expect = 2.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 378 TDDKGVATFKGIPF 391
T + GV +KGIP+
Sbjct: 16 TTENGVHKWKGIPY 29
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.7 bits (63), Expect = 3.1
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 7/112 (6%)
Query: 136 QSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTVQSTNHAEKSEAPSNLKSGDAK 195
Q + + + GF P A + +G A
Sbjct: 30 QQESEIAGIENDE-----GFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPAD 84
Query: 196 KGDTALQEKKKSVETEAVDK--DKTKKAVGDKEAGQEKKKSSETAAVDKDKE 245
Q + + E E++ K ++ +K + + +A + + KD E
Sbjct: 85 GYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 136
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
unknown function; 2.20A {Bacteroides thetaiotaomicron}
SCOP: c.108.1.25
Length = 142
Score = 28.0 bits (62), Expect = 3.3
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 349 ISFSGIDGKPEEVLNPKKKQLEKITPNLFTDDKGVATFKG 388
+ F + E + K+ +LF DD+ V
Sbjct: 66 LEFYAANKDYPEEERDHQGFSRKLKADLFIDDRNVGGIPD 105
>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor
complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP:
a.45.1.1 c.47.1.5
Length = 209
Score = 28.3 bits (64), Expect = 3.5
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 69 PADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHV 128
P + K D + LN L + GN L + AD+ + + + ++ V D P+V
Sbjct: 124 PENEKKMKDAVGFLNTFLEGQEYAAGNDL--TIADLSLAATIATYEVA--GFDFAPYPNV 179
Query: 129 MRWMDYIQS 137
W ++
Sbjct: 180 AAWFARCKA 188
>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase,
detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles
dirus} SCOP: a.45.1.1 c.47.1.5
Length = 210
Score = 28.3 bits (64), Expect = 3.6
Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 82 LNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSK 138
L + + ++ + L + AD+ + V + D PH+ W++ ++++
Sbjct: 135 LEQFVTERAYAAADHL--TVADICLLGTVTALNWL--KHDLEPFPHIRAWLERVRAE 187
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 4.3
Identities = 46/238 (19%), Positives = 74/238 (31%), Gaps = 52/238 (21%)
Query: 201 LQEKKKSVETEAVDKDKTKKAVGDKEAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRK 260
L+E + E V+ + +KAV + A + K + +A + NIQ+
Sbjct: 737 LKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPE- 795
Query: 261 SWKHPSADSLLVEEIDVGEAKLRQ--VVSGLAKYCNP-------------DDLTNRRVA- 304
K + G L + VV+G A+ P + +
Sbjct: 796 -LKPYKQVKQIAPAELEGLLDLERVIVVTGFAEV-GPWGSARTRWEMEAFGEFSLEGCVE 853
Query: 305 ------LITNVKPGKLRDVMSEGLVLCASNE--DHTNVEPLLPPEGAKIGERI-SFSGI- 354
I+ G L+ G V + E D +V+ AK I SGI
Sbjct: 854 MAWIMGFISYHN-GNLKGRPYTGWVDSKTKEPVDDKDVK-------AKYETSILEHSGIR 905
Query: 355 --DGKPEEVLNPKKKQL-------EKITPNLFTDDKGVATFKGIPFMTSAGPCTSSIP 403
+ + NP+KK++ E + P F K A F G
Sbjct: 906 LIEPELFNGYNPEKKEMIQEVIVEEDLEP--FEASKETAE----QFKHQHGDKVDIFE 957
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 28.5 bits (63), Expect = 4.5
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 126 PHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTV 174
++++Q +G + PGFE +HGA ++ + TV
Sbjct: 667 EESRPVLEFLQMLCEIGAHY-------PGFETDIHGAY--RQADGRYTV 706
>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula
elliptica} PDB: 3qaw_A*
Length = 243
Score = 28.0 bits (63), Expect = 4.7
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 102 ADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
ADV F V V ANL P++ ++ + + +
Sbjct: 184 ADVFFFPMVALIVRQGANLKD-SYPNIFKYYNMMMDRPT 221
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*
Length = 244
Score = 27.7 bits (62), Expect = 5.6
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 63 EFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQ 122
E E L ++ L + L G + + AD++ + V L +
Sbjct: 130 EKVERNRTAMDQALQWL--EDKFLGDRPFLAGQQV--TLADLMALEELMQPVALGYELFE 185
Query: 123 GKMPHVMRWMDYIQS 137
P + W +++
Sbjct: 186 -GRPRLAAWRGRVEA 199
>3n5o_A Glutathione transferase; seattle structural genomics center for
infectious disease, S GST, pathogenic fungus,
coccidioidomycosis; HET: GSH; 1.85A {Coccidioides
immitis} PDB: 3lg6_A*
Length = 235
Score = 27.7 bits (62), Expect = 6.6
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 102 ADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
ADV + AV + +L + P R + + +EA
Sbjct: 181 ADVCLVPAVWAAERVGMDLA--RFPITKRVFEEMLKEEA 217
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 27.7 bits (62), Expect = 6.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 89 KSVLLGNGLRTSEADVIV 106
KSVLLG R + ADVIV
Sbjct: 170 KSVLLGMMARYTRADVIV 187
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 28.1 bits (62), Expect = 7.0
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 126 PHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAK 163
+ Y++S ++ F PGFE G +
Sbjct: 712 DKNSPQVSYLRSLQSWDHHF-------PGFEHETEGTE 742
>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET:
CIT; 2.02A {Yersinia pestis}
Length = 213
Score = 27.3 bits (61), Expect = 8.1
Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 2/68 (2%)
Query: 73 KACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWM 132
K + L+ + + S D + + V + +M
Sbjct: 130 KQLREELLSIAPVFNETPFFMSEEF--SLVDCYLAPLLWRLPVLGIEFTGAGSKELKGYM 187
Query: 133 DYIQSKEA 140
+ ++A
Sbjct: 188 TRVFERDA 195
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 27.2 bits (61), Expect = 9.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 89 KSVLLGNGLRTSEADVIVF 107
KS LLG + AD+IV
Sbjct: 84 KSTLLGMICNGASADIIVL 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.355
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,827,696
Number of extensions: 345912
Number of successful extensions: 567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 87
Length of query: 408
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 312
Effective length of database: 4,021,377
Effective search space: 1254669624
Effective search space used: 1254669624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.0 bits)